Query 038568
Match_columns 357
No_of_seqs 726 out of 1663
Neff 12.0
Searched_HMMs 46136
Date Fri Mar 29 12:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.9E-57 6.3E-62 346.9 25.7 294 12-357 103-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 3E-51 6.6E-56 317.5 22.8 272 28-357 174-458 (459)
3 KOG0286 G-protein beta subunit 100.0 4.7E-46 1E-50 275.8 29.1 288 15-357 46-343 (343)
4 KOG0279 G protein beta subunit 100.0 5.8E-44 1.2E-48 263.0 27.4 283 15-357 6-311 (315)
5 KOG0285 Pleiotropic regulator 100.0 2.5E-44 5.4E-49 273.8 23.9 285 12-357 139-437 (460)
6 KOG0265 U5 snRNP-specific prot 100.0 2.5E-43 5.5E-48 262.2 26.2 283 16-355 36-334 (338)
7 KOG0315 G-protein beta subunit 100.0 7E-43 1.5E-47 253.3 27.3 266 39-357 10-286 (311)
8 KOG0271 Notchless-like WD40 re 100.0 5.3E-44 1.2E-48 274.2 21.5 240 62-357 108-395 (480)
9 KOG0272 U4/U6 small nuclear ri 100.0 7.7E-45 1.7E-49 282.0 16.7 243 10-305 203-458 (459)
10 KOG0281 Beta-TrCP (transducin 100.0 6.5E-44 1.4E-48 270.9 18.6 279 17-357 187-475 (499)
11 KOG0295 WD40 repeat-containing 100.0 1E-42 2.2E-47 265.4 23.3 283 13-357 97-404 (406)
12 KOG0318 WD40 repeat stress pro 100.0 7E-41 1.5E-45 267.0 34.5 324 8-357 174-600 (603)
13 KOG0315 G-protein beta subunit 100.0 1.3E-41 2.9E-46 246.7 27.3 273 10-331 26-309 (311)
14 KOG0282 mRNA splicing factor [ 100.0 2.8E-43 6.1E-48 277.8 18.8 286 13-357 203-503 (503)
15 KOG0273 Beta-transducin family 100.0 1.1E-41 2.3E-46 268.1 25.8 275 28-357 177-480 (524)
16 KOG0284 Polyadenylation factor 100.0 1.1E-42 2.3E-47 269.0 17.7 273 28-357 95-378 (464)
17 KOG0645 WD40 repeat protein [G 100.0 1.5E-40 3.3E-45 244.0 27.9 285 16-357 6-309 (312)
18 KOG0316 Conserved WD40 repeat- 100.0 1.9E-40 4.1E-45 238.9 24.5 274 16-356 9-296 (307)
19 KOG0263 Transcription initiati 100.0 1.1E-41 2.4E-46 284.1 20.4 275 11-357 365-647 (707)
20 KOG0293 WD40 repeat-containing 100.0 5.7E-41 1.2E-45 260.1 22.4 290 7-357 207-511 (519)
21 KOG0319 WD40-repeat-containing 100.0 4.8E-40 1E-44 272.1 26.1 288 10-357 309-617 (775)
22 KOG0273 Beta-transducin family 100.0 1.7E-39 3.6E-44 255.8 27.6 270 28-357 234-521 (524)
23 KOG0319 WD40-repeat-containing 100.0 1.1E-39 2.3E-44 270.1 26.7 323 11-357 134-575 (775)
24 cd00200 WD40 WD40 domain, foun 100.0 1.7E-38 3.6E-43 259.3 33.6 272 28-357 8-289 (289)
25 KOG0313 Microtubule binding pr 100.0 1.2E-39 2.5E-44 250.1 24.1 286 12-356 94-415 (423)
26 KOG0281 Beta-TrCP (transducin 100.0 6.2E-41 1.3E-45 254.8 14.6 250 10-309 223-479 (499)
27 KOG0266 WD40 repeat-containing 100.0 1.3E-38 2.7E-43 271.7 29.6 274 28-357 158-452 (456)
28 KOG0296 Angio-associated migra 100.0 8.1E-39 1.7E-43 244.3 24.9 287 17-357 57-396 (399)
29 KOG0286 G-protein beta subunit 100.0 2.1E-38 4.5E-43 235.3 26.3 242 61-357 47-301 (343)
30 KOG0291 WD40-repeat-containing 100.0 1.2E-37 2.6E-42 258.8 33.1 318 10-357 131-506 (893)
31 KOG0279 G protein beta subunit 100.0 3.4E-38 7.3E-43 232.7 24.7 247 10-307 49-313 (315)
32 KOG0291 WD40-repeat-containing 100.0 1E-37 2.2E-42 259.1 29.4 291 8-357 291-610 (893)
33 KOG0285 Pleiotropic regulator 100.0 4E-38 8.6E-43 240.2 22.7 239 60-357 142-387 (460)
34 KOG0318 WD40 repeat stress pro 100.0 8.2E-37 1.8E-41 243.9 30.3 289 28-357 146-558 (603)
35 PLN00181 protein SPA1-RELATED; 100.0 1.4E-36 3.1E-41 277.7 35.1 276 28-357 482-791 (793)
36 KOG0263 Transcription initiati 100.0 7.5E-38 1.6E-42 261.3 23.1 247 41-335 423-698 (707)
37 KOG0277 Peroxisomal targeting 100.0 1E-37 2.2E-42 227.2 20.4 273 33-357 12-307 (311)
38 KOG0292 Vesicle coat complex C 100.0 2.5E-37 5.4E-42 261.2 25.2 280 28-353 8-316 (1202)
39 KOG0276 Vesicle coat complex C 100.0 1.2E-37 2.5E-42 253.7 20.8 239 63-357 7-255 (794)
40 KOG0295 WD40 repeat-containing 100.0 4.9E-37 1.1E-41 234.5 22.8 243 12-306 138-405 (406)
41 KOG0276 Vesicle coat complex C 100.0 4.4E-37 9.5E-42 250.4 23.6 270 28-355 12-295 (794)
42 KOG0274 Cdc4 and related F-box 100.0 9.9E-37 2.2E-41 259.1 26.0 269 28-357 207-480 (537)
43 KOG0306 WD40-repeat-containing 100.0 2E-36 4.4E-41 251.3 26.4 271 28-357 372-662 (888)
44 KOG0284 Polyadenylation factor 100.0 8E-38 1.7E-42 242.2 15.9 233 28-307 137-380 (464)
45 KOG0306 WD40-repeat-containing 100.0 2E-35 4.2E-40 245.5 28.4 321 15-357 98-620 (888)
46 KOG0645 WD40 repeat protein [G 100.0 1.2E-34 2.6E-39 213.1 27.7 243 61-356 6-258 (312)
47 KOG0643 Translation initiation 100.0 5.6E-35 1.2E-39 214.5 24.2 276 23-356 6-314 (327)
48 KOG0278 Serine/threonine kinas 100.0 5.8E-36 1.3E-40 217.7 17.3 269 28-357 13-295 (334)
49 KOG0305 Anaphase promoting com 100.0 1.7E-34 3.6E-39 236.9 26.5 266 35-357 183-459 (484)
50 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-33 5.5E-38 210.8 29.5 275 28-356 13-300 (311)
51 KOG0265 U5 snRNP-specific prot 100.0 1.5E-34 3.2E-39 215.6 21.3 243 61-357 39-294 (338)
52 KOG0277 Peroxisomal targeting 100.0 3.8E-35 8.2E-40 213.9 17.7 252 4-306 40-308 (311)
53 KOG0292 Vesicle coat complex C 100.0 6.6E-35 1.4E-39 246.6 21.5 238 71-357 8-278 (1202)
54 KOG0288 WD40 repeat protein Ti 100.0 3.5E-35 7.5E-40 227.9 17.1 280 13-357 164-459 (459)
55 KOG0275 Conserved WD40 repeat- 100.0 6.3E-35 1.4E-39 220.5 18.0 289 13-357 201-507 (508)
56 KOG0640 mRNA cleavage stimulat 100.0 1.4E-34 3E-39 217.0 19.4 290 9-356 98-423 (430)
57 KOG1407 WD40 repeat protein [F 100.0 2.9E-33 6.4E-38 204.8 24.7 264 28-350 19-293 (313)
58 KOG0313 Microtubule binding pr 100.0 5.9E-34 1.3E-38 218.9 21.8 272 12-308 132-419 (423)
59 KOG0772 Uncharacterized conser 100.0 6E-34 1.3E-38 227.2 22.5 293 28-356 166-484 (641)
60 KOG0268 Sof1-like rRNA process 100.0 6.7E-35 1.4E-39 222.9 15.5 269 28-357 65-343 (433)
61 KOG0283 WD40 repeat-containing 100.0 8.3E-34 1.8E-38 239.1 22.5 264 70-357 265-574 (712)
62 KOG0266 WD40 repeat-containing 100.0 3.3E-33 7.2E-38 238.5 26.6 237 71-357 158-407 (456)
63 KOG0641 WD40 repeat protein [G 100.0 9E-32 2E-36 193.5 29.2 295 9-356 18-346 (350)
64 KOG0316 Conserved WD40 repeat- 100.0 1.3E-33 2.7E-38 203.8 19.5 238 61-357 9-255 (307)
65 KOG0274 Cdc4 and related F-box 100.0 1.6E-33 3.4E-38 239.7 23.6 248 11-313 235-488 (537)
66 KOG0283 WD40 repeat-containing 100.0 8.6E-34 1.9E-38 239.0 21.6 242 28-307 266-576 (712)
67 KOG0289 mRNA splicing factor [ 100.0 5.4E-33 1.2E-37 217.2 24.5 273 30-356 220-503 (506)
68 KOG0282 mRNA splicing factor [ 100.0 5E-35 1.1E-39 231.4 13.0 248 59-357 204-460 (503)
69 KOG0278 Serine/threonine kinas 100.0 9E-35 1.9E-39 211.6 13.3 244 14-311 49-301 (334)
70 PLN00181 protein SPA1-RELATED; 100.0 1.1E-32 2.4E-37 252.3 30.3 264 49-357 459-736 (793)
71 KOG0300 WD40 repeat-containing 100.0 3.8E-33 8.2E-38 210.2 20.7 317 13-357 137-474 (481)
72 KOG0301 Phospholipase A2-activ 100.0 1.5E-32 3.3E-37 226.4 26.0 273 12-356 2-285 (745)
73 KOG0647 mRNA export protein (c 100.0 2.8E-32 6.1E-37 203.7 24.2 259 28-335 26-306 (347)
74 KOG0310 Conserved WD40 repeat- 100.0 2.2E-32 4.8E-37 216.8 24.9 269 28-355 25-305 (487)
75 cd00200 WD40 WD40 domain, foun 100.0 1.2E-31 2.7E-36 218.7 28.7 238 63-357 3-247 (289)
76 PTZ00420 coronin; Provisional 100.0 3.5E-31 7.7E-36 226.1 31.8 259 35-334 34-318 (568)
77 KOG1036 Mitotic spindle checkp 100.0 1.7E-31 3.6E-36 200.2 25.6 264 28-348 12-293 (323)
78 KOG0264 Nucleosome remodeling 100.0 1.7E-32 3.7E-37 215.6 20.8 253 13-308 114-405 (422)
79 KOG0294 WD40 repeat-containing 100.0 1.6E-31 3.5E-36 200.8 23.9 265 9-331 28-306 (362)
80 KOG1332 Vesicle coat complex C 100.0 1.5E-32 3.2E-37 199.3 17.5 243 71-356 10-283 (299)
81 PTZ00421 coronin; Provisional 100.0 9.2E-31 2E-35 222.6 30.5 257 37-334 30-315 (493)
82 KOG0264 Nucleosome remodeling 100.0 4.4E-32 9.5E-37 213.3 18.9 250 71-357 123-402 (422)
83 KOG2096 WD40 repeat protein [G 100.0 7.1E-31 1.5E-35 197.9 23.5 294 28-356 85-399 (420)
84 KOG0308 Conserved WD40 repeat- 100.0 4.3E-32 9.4E-37 222.3 18.2 275 28-356 20-324 (735)
85 KOG0294 WD40 repeat-containing 100.0 8.8E-31 1.9E-35 196.9 23.3 259 41-357 3-279 (362)
86 KOG0296 Angio-associated migra 100.0 4.1E-31 8.9E-36 202.3 21.3 241 61-357 56-354 (399)
87 KOG4283 Transcription-coupled 100.0 9.1E-31 2E-35 195.3 22.5 286 28-356 42-362 (397)
88 KOG1408 WD40 repeat protein [F 100.0 6.6E-31 1.4E-35 218.0 23.8 304 33-357 328-711 (1080)
89 KOG0293 WD40 repeat-containing 100.0 6.3E-31 1.4E-35 204.6 20.8 242 14-308 259-514 (519)
90 KOG0299 U3 snoRNP-associated p 100.0 1.1E-29 2.3E-34 200.2 27.9 263 28-335 141-438 (479)
91 KOG1332 Vesicle coat complex C 100.0 3.4E-31 7.4E-36 192.3 17.4 249 28-315 10-294 (299)
92 KOG0973 Histone transcription 100.0 1.5E-30 3.3E-35 225.2 24.5 289 28-356 12-352 (942)
93 KOG0275 Conserved WD40 repeat- 100.0 3.4E-31 7.5E-36 200.3 17.3 242 71-356 212-464 (508)
94 KOG0269 WD40 repeat-containing 100.0 5.8E-31 1.3E-35 219.7 18.4 277 30-354 40-335 (839)
95 PTZ00420 coronin; Provisional 100.0 3.2E-29 6.9E-34 214.2 29.4 196 140-357 72-291 (568)
96 PTZ00421 coronin; Provisional 100.0 3.1E-29 6.7E-34 213.3 28.8 245 73-357 21-288 (493)
97 KOG0650 WD40 repeat nucleolar 100.0 7.7E-30 1.7E-34 207.4 22.7 314 11-356 387-732 (733)
98 KOG1407 WD40 repeat protein [F 100.0 7.1E-30 1.5E-34 187.2 19.8 236 63-355 14-257 (313)
99 KOG2445 Nuclear pore complex c 100.0 8.7E-29 1.9E-33 185.7 23.9 249 70-357 11-316 (361)
100 KOG2445 Nuclear pore complex c 100.0 2.8E-28 6.1E-33 182.9 25.3 271 28-331 12-341 (361)
101 KOG1063 RNA polymerase II elon 100.0 5E-29 1.1E-33 205.8 22.4 332 10-357 177-646 (764)
102 KOG0288 WD40 repeat protein Ti 100.0 6E-30 1.3E-34 199.0 15.8 239 14-305 209-459 (459)
103 KOG0299 U3 snoRNP-associated p 100.0 7.5E-29 1.6E-33 195.5 21.6 252 71-357 141-408 (479)
104 KOG0310 Conserved WD40 repeat- 100.0 7.1E-29 1.5E-33 197.0 21.2 232 28-308 67-310 (487)
105 KOG0301 Phospholipase A2-activ 100.0 4.4E-29 9.5E-34 206.2 20.7 238 59-357 4-247 (745)
106 KOG0289 mRNA splicing factor [ 100.0 2.7E-28 5.7E-33 191.1 23.9 249 9-306 246-505 (506)
107 KOG0308 Conserved WD40 repeat- 100.0 1.7E-29 3.6E-34 207.3 17.8 293 13-357 62-391 (735)
108 KOG2106 Uncharacterized conser 100.0 3.5E-27 7.6E-32 188.3 30.4 300 29-357 246-624 (626)
109 KOG0641 WD40 repeat protein [G 100.0 1.7E-27 3.7E-32 171.5 25.7 237 28-307 88-349 (350)
110 KOG1539 WD repeat protein [Gen 100.0 2E-28 4.4E-33 206.3 24.1 303 10-357 188-604 (910)
111 KOG0646 WD40 repeat protein [G 100.0 5E-28 1.1E-32 191.2 24.4 271 41-357 9-305 (476)
112 KOG0639 Transducin-like enhanc 100.0 6.1E-29 1.3E-33 198.4 18.1 281 14-356 410-701 (705)
113 KOG1446 Histone H3 (Lys4) meth 100.0 5.1E-27 1.1E-31 177.0 26.9 243 59-357 4-260 (311)
114 KOG0643 Translation initiation 100.0 8.2E-28 1.8E-32 177.0 21.8 227 65-335 6-244 (327)
115 KOG0305 Anaphase promoting com 100.0 5.8E-28 1.3E-32 198.6 22.9 235 28-309 216-463 (484)
116 KOG1036 Mitotic spindle checkp 100.0 2.1E-27 4.4E-32 178.4 23.2 234 70-357 11-260 (323)
117 KOG0268 Sof1-like rRNA process 100.0 4.8E-29 1E-33 191.0 14.0 243 11-309 96-347 (433)
118 KOG2048 WD40 repeat protein [G 100.0 1.2E-26 2.7E-31 191.4 28.2 277 28-355 24-315 (691)
119 KOG0647 mRNA export protein (c 100.0 2.3E-27 5E-32 177.6 21.7 237 69-357 24-279 (347)
120 KOG0300 WD40 repeat-containing 100.0 3.5E-28 7.5E-33 183.6 17.3 250 11-309 177-478 (481)
121 KOG0269 WD40 repeat-containing 100.0 2.4E-28 5.3E-33 204.2 17.6 254 8-309 68-342 (839)
122 KOG0321 WD40 repeat-containing 100.0 1.3E-27 2.9E-32 195.8 21.0 290 28-357 46-389 (720)
123 KOG1034 Transcriptional repres 100.0 3.3E-27 7.1E-32 178.8 21.3 302 12-357 25-381 (385)
124 KOG0772 Uncharacterized conser 100.0 4.9E-28 1.1E-32 193.7 17.3 246 71-357 166-443 (641)
125 KOG2106 Uncharacterized conser 100.0 5.8E-26 1.3E-30 181.5 28.8 281 28-356 153-474 (626)
126 KOG0640 mRNA cleavage stimulat 100.0 2.9E-27 6.3E-32 177.9 19.3 245 14-307 162-426 (430)
127 KOG4328 WD40 protein [Function 100.0 1.3E-26 2.9E-31 182.8 23.8 291 12-356 174-492 (498)
128 KOG0646 WD40 repeat protein [G 100.0 7.8E-27 1.7E-31 184.5 21.4 250 28-307 80-350 (476)
129 KOG0267 Microtubule severing p 100.0 1.5E-28 3.2E-33 204.1 12.3 246 41-350 6-259 (825)
130 KOG1408 WD40 repeat protein [F 100.0 1.5E-26 3.3E-31 192.4 23.6 280 31-357 262-669 (1080)
131 KOG0973 Histone transcription 100.0 5.9E-27 1.3E-31 203.2 21.2 237 28-310 68-358 (942)
132 KOG0302 Ribosome Assembly prot 100.0 6E-27 1.3E-31 180.5 18.9 240 28-305 150-436 (440)
133 KOG2055 WD40 repeat protein [G 100.0 4.9E-26 1.1E-30 179.8 24.4 281 25-357 209-510 (514)
134 KOG0302 Ribosome Assembly prot 100.0 1.8E-27 3.9E-32 183.3 15.8 203 140-357 149-376 (440)
135 KOG0270 WD40 repeat-containing 100.0 8.1E-27 1.7E-31 183.3 18.8 229 39-309 192-451 (463)
136 KOG1273 WD40 repeat protein [G 100.0 5.7E-26 1.2E-30 171.3 22.3 281 14-357 15-320 (405)
137 KOG0270 WD40 repeat-containing 100.0 2E-26 4.3E-31 181.2 20.0 256 73-357 174-447 (463)
138 KOG1539 WD repeat protein [Gen 100.0 2.2E-25 4.9E-30 188.1 27.3 313 10-356 230-645 (910)
139 KOG2048 WD40 repeat protein [G 99.9 3.2E-25 6.9E-30 183.1 26.2 239 71-356 24-272 (691)
140 KOG1274 WD40 repeat protein [G 99.9 4E-25 8.8E-30 188.5 27.4 263 28-335 12-283 (933)
141 KOG4283 Transcription-coupled 99.9 1.4E-25 3.1E-30 167.7 19.8 214 70-310 41-279 (397)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.2E-24 7E-29 176.4 29.6 259 39-357 1-277 (300)
143 KOG0267 Microtubule severing p 99.9 2.4E-27 5.1E-32 197.0 9.8 223 28-298 27-259 (825)
144 KOG0321 WD40 repeat-containing 99.9 8.9E-26 1.9E-30 185.2 18.6 270 20-309 93-393 (720)
145 KOG1274 WD40 repeat protein [G 99.9 8.7E-25 1.9E-29 186.5 24.7 236 71-357 12-260 (933)
146 KOG0322 G-protein beta subunit 99.9 5.2E-26 1.1E-30 167.3 15.0 284 28-357 13-321 (323)
147 KOG1063 RNA polymerase II elon 99.9 2.8E-24 6E-29 178.1 25.7 320 15-357 45-435 (764)
148 KOG0639 Transducin-like enhanc 99.9 1.5E-25 3.3E-30 179.2 16.4 234 71-356 418-660 (705)
149 KOG1188 WD40 repeat protein [G 99.9 6.4E-25 1.4E-29 167.3 18.9 272 40-357 41-344 (376)
150 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-24 3.4E-29 173.1 19.2 255 32-334 37-305 (673)
151 KOG0307 Vesicle coat complex C 99.9 2.2E-25 4.9E-30 194.5 15.5 238 28-309 63-329 (1049)
152 KOG4227 WD40 repeat protein [G 99.9 6.4E-24 1.4E-28 165.1 20.3 289 28-357 55-385 (609)
153 KOG1334 WD40 repeat protein [G 99.9 4.2E-25 9.1E-30 175.9 13.7 289 28-356 141-463 (559)
154 KOG0307 Vesicle coat complex C 99.9 4.8E-25 1.1E-29 192.4 14.8 259 46-356 36-324 (1049)
155 KOG0290 Conserved WD40 repeat- 99.9 2E-23 4.3E-28 155.9 21.0 288 13-348 34-355 (364)
156 KOG1445 Tumor-specific antigen 99.9 6.2E-24 1.3E-28 174.8 18.8 113 235-357 628-748 (1012)
157 KOG0303 Actin-binding protein 99.9 1.9E-23 4.2E-28 162.3 20.1 241 57-334 66-321 (472)
158 KOG2096 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 156.9 20.6 244 49-335 62-344 (420)
159 KOG4328 WD40 protein [Function 99.9 4E-23 8.8E-28 163.3 20.4 252 60-357 177-448 (498)
160 KOG1517 Guanine nucleotide bin 99.9 6.7E-23 1.5E-27 177.7 23.5 290 29-356 1064-1378(1387)
161 KOG1009 Chromatin assembly com 99.9 2.4E-22 5.3E-27 156.7 21.9 295 29-354 13-367 (434)
162 KOG4378 Nuclear protein COP1 [ 99.9 1E-22 2.2E-27 162.9 19.5 262 41-357 5-278 (673)
163 KOG1007 WD repeat protein TSSC 99.9 3.3E-22 7.2E-27 149.4 20.0 243 28-308 62-362 (370)
164 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.4E-21 7.3E-26 158.4 28.1 258 13-332 20-300 (300)
165 KOG1034 Transcriptional repres 99.9 1.1E-22 2.4E-27 154.5 15.9 248 28-307 88-383 (385)
166 KOG1007 WD repeat protein TSSC 99.9 1.5E-21 3.2E-26 145.9 21.6 266 47-355 38-357 (370)
167 KOG2055 WD40 repeat protein [G 99.9 4.8E-22 1E-26 157.5 19.8 239 71-355 212-463 (514)
168 KOG1538 Uncharacterized conser 99.9 1.4E-21 2.9E-26 162.2 22.7 264 31-357 14-291 (1081)
169 KOG2919 Guanine nucleotide-bin 99.9 1.5E-21 3.3E-26 148.1 20.6 266 32-350 52-361 (406)
170 KOG1587 Cytoplasmic dynein int 99.9 5.7E-21 1.2E-25 162.1 23.9 267 49-357 223-514 (555)
171 KOG0649 WD40 repeat protein [G 99.9 1.5E-20 3.3E-25 137.3 22.3 285 31-356 12-313 (325)
172 KOG1310 WD40 repeat protein [G 99.9 2.8E-21 6E-26 156.7 20.4 213 28-264 49-303 (758)
173 KOG0644 Uncharacterized conser 99.9 1.2E-22 2.7E-27 172.0 12.0 262 28-355 189-464 (1113)
174 KOG0290 Conserved WD40 repeat- 99.9 1.4E-20 3E-25 140.9 20.3 201 140-357 94-316 (364)
175 KOG0303 Actin-binding protein 99.9 1.8E-21 3.9E-26 151.5 16.1 248 16-308 70-338 (472)
176 KOG0642 Cell-cycle nuclear pro 99.9 6.4E-22 1.4E-26 160.6 13.6 258 18-321 288-572 (577)
177 KOG0650 WD40 repeat nucleolar 99.9 5.4E-21 1.2E-25 156.4 18.7 236 64-356 395-677 (733)
178 KOG2110 Uncharacterized conser 99.9 1.8E-18 3.9E-23 133.8 30.1 234 28-308 4-249 (391)
179 KOG2919 Guanine nucleotide-bin 99.9 7.9E-21 1.7E-25 144.3 15.5 223 39-298 123-361 (406)
180 COG2319 FOG: WD40 repeat [Gene 99.9 1.7E-18 3.6E-23 149.9 32.5 275 28-357 64-357 (466)
181 KOG1445 Tumor-specific antigen 99.9 1.2E-20 2.7E-25 155.7 17.6 238 39-310 591-847 (1012)
182 KOG1240 Protein kinase contain 99.9 2.1E-19 4.5E-24 158.6 25.8 298 12-357 1036-1431(1431)
183 KOG1273 WD40 repeat protein [G 99.9 3.5E-20 7.5E-25 140.4 18.1 261 8-309 49-324 (405)
184 KOG1523 Actin-related protein 99.9 2.3E-19 4.9E-24 136.2 22.1 293 28-357 9-360 (361)
185 KOG1963 WD40 repeat protein [G 99.9 2.3E-18 4.9E-23 147.3 27.1 212 136-357 245-536 (792)
186 KOG0642 Cell-cycle nuclear pro 99.8 1.9E-20 4.1E-25 152.1 13.1 241 71-357 293-559 (577)
187 KOG0649 WD40 repeat protein [G 99.8 3E-18 6.5E-23 125.4 22.8 238 74-356 12-271 (325)
188 KOG1524 WD40 repeat-containing 99.8 1.1E-18 2.4E-23 141.5 21.2 256 28-355 13-282 (737)
189 KOG1188 WD40 repeat protein [G 99.8 3.9E-19 8.3E-24 136.1 16.9 261 9-307 55-346 (376)
190 KOG0644 Uncharacterized conser 99.8 1.3E-20 2.8E-25 159.9 8.6 237 60-357 181-424 (1113)
191 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-16 3.3E-21 137.6 33.2 280 14-357 145-440 (466)
192 KOG1272 WD40-repeat-containing 99.8 6.3E-20 1.4E-24 145.9 10.5 252 32-335 132-392 (545)
193 KOG2110 Uncharacterized conser 99.8 7.6E-17 1.6E-21 125.0 27.0 194 28-265 45-249 (391)
194 PRK11028 6-phosphogluconolacto 99.8 7.7E-17 1.7E-21 133.8 28.6 272 41-357 3-302 (330)
195 KOG1517 Guanine nucleotide bin 99.8 4.9E-18 1.1E-22 148.0 21.4 238 74-357 1066-1331(1387)
196 KOG1538 Uncharacterized conser 99.8 1.7E-18 3.7E-23 144.0 17.9 240 8-307 37-293 (1081)
197 KOG1587 Cytoplasmic dynein int 99.8 1.7E-17 3.8E-22 141.1 22.2 250 28-308 241-517 (555)
198 KOG0322 G-protein beta subunit 99.8 1.8E-18 3.8E-23 128.0 14.0 247 28-306 55-322 (323)
199 KOG2394 WD40 protein DMR-N9 [G 99.8 1.5E-17 3.4E-22 134.8 19.3 214 32-289 126-384 (636)
200 KOG1963 WD40 repeat protein [G 99.8 1.4E-16 3.1E-21 136.5 25.9 301 35-357 22-373 (792)
201 KOG1523 Actin-related protein 99.8 2.5E-17 5.4E-22 125.3 18.8 229 71-335 9-262 (361)
202 KOG1524 WD40 repeat-containing 99.8 1.1E-17 2.5E-22 135.7 15.8 222 71-334 13-239 (737)
203 KOG1310 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 136.0 14.1 171 61-264 42-231 (758)
204 KOG0771 Prolactin regulatory e 99.8 3.9E-17 8.3E-22 128.7 15.2 190 33-265 148-355 (398)
205 KOG2111 Uncharacterized conser 99.8 9.6E-15 2.1E-19 111.3 26.9 235 31-308 7-257 (346)
206 PRK11028 6-phosphogluconolacto 99.8 8E-15 1.7E-19 121.8 29.2 249 15-308 26-305 (330)
207 KOG1409 Uncharacterized conser 99.8 5.5E-16 1.2E-20 119.3 20.0 251 12-308 12-271 (404)
208 KOG0771 Prolactin regulatory e 99.8 5.1E-17 1.1E-21 128.0 14.7 195 76-308 148-355 (398)
209 KOG3881 Uncharacterized conser 99.7 2.8E-16 6E-21 122.8 17.8 264 28-334 54-343 (412)
210 KOG0974 WD-repeat protein WDR6 99.7 3.9E-16 8.5E-21 136.2 20.4 182 153-357 100-286 (967)
211 KOG1240 Protein kinase contain 99.7 1.2E-15 2.5E-20 135.4 22.2 259 53-357 1034-1332(1431)
212 KOG4227 WD40 repeat protein [G 99.7 4.6E-16 1E-20 121.8 17.6 246 71-357 55-320 (609)
213 KOG3881 Uncharacterized conser 99.7 8.6E-16 1.9E-20 120.0 17.8 249 71-357 54-318 (412)
214 KOG1009 Chromatin assembly com 99.7 1.2E-16 2.5E-21 125.4 12.7 162 182-354 12-190 (434)
215 PRK01742 tolB translocation pr 99.7 1.1E-15 2.4E-20 130.8 19.7 233 47-334 182-427 (429)
216 KOG2321 WD40 repeat protein [G 99.7 4E-15 8.6E-20 122.1 21.5 280 14-355 42-339 (703)
217 KOG2139 WD40 repeat protein [G 99.7 2.5E-14 5.5E-19 111.0 24.4 286 30-354 99-426 (445)
218 KOG4497 Uncharacterized conser 99.7 5.3E-15 1.1E-19 113.4 18.6 262 36-356 15-388 (447)
219 KOG1272 WD40-repeat-containing 99.7 7.4E-17 1.6E-21 128.6 8.0 224 73-356 130-359 (545)
220 KOG2111 Uncharacterized conser 99.7 8.8E-14 1.9E-18 106.2 22.2 174 49-267 76-259 (346)
221 KOG1354 Serine/threonine prote 99.7 1.3E-14 2.8E-19 111.8 17.6 278 28-308 24-360 (433)
222 KOG2394 WD40 protein DMR-N9 [G 99.7 5E-15 1.1E-19 120.5 15.3 199 153-357 186-450 (636)
223 KOG1334 WD40 repeat protein [G 99.7 2.4E-15 5.2E-20 120.9 12.8 248 63-357 136-422 (559)
224 KOG4497 Uncharacterized conser 99.6 1.5E-13 3.2E-18 105.6 20.6 306 10-352 35-425 (447)
225 PRK01742 tolB translocation pr 99.6 6.5E-14 1.4E-18 120.0 18.2 186 140-356 201-398 (429)
226 PRK03629 tolB translocation pr 99.6 7.1E-13 1.5E-17 113.3 22.5 231 49-333 180-428 (429)
227 KOG0280 Uncharacterized conser 99.6 6.7E-13 1.4E-17 100.4 19.1 261 49-356 47-330 (339)
228 KOG2139 WD40 repeat protein [G 99.6 4.3E-13 9.3E-18 104.3 17.7 196 142-352 98-304 (445)
229 PF02239 Cytochrom_D1: Cytochr 99.6 1.1E-11 2.5E-16 102.9 26.7 264 39-357 5-300 (369)
230 PF02239 Cytochrom_D1: Cytochr 99.5 1.3E-11 2.8E-16 102.5 25.2 292 10-357 22-345 (369)
231 KOG2321 WD40 repeat protein [G 99.5 1E-12 2.3E-17 108.2 18.2 234 71-357 50-300 (703)
232 PRK04922 tolB translocation pr 99.5 2.5E-12 5.4E-17 110.5 21.1 226 49-332 185-432 (433)
233 PRK02889 tolB translocation pr 99.5 5.2E-12 1.1E-16 108.2 22.8 229 49-333 177-425 (427)
234 KOG0309 Conserved WD40 repeat- 99.5 9.3E-14 2E-18 117.6 11.2 297 8-356 9-336 (1081)
235 KOG4547 WD40 repeat-containing 99.5 9.4E-12 2E-16 103.0 21.5 248 85-355 8-266 (541)
236 PF08662 eIF2A: Eukaryotic tra 99.5 3.8E-12 8.2E-17 96.1 17.0 108 141-264 58-179 (194)
237 KOG4547 WD40 repeat-containing 99.5 1.5E-11 3.2E-16 101.8 21.2 185 39-265 5-221 (541)
238 KOG1409 Uncharacterized conser 99.5 2.6E-12 5.6E-17 99.4 14.7 205 138-357 20-268 (404)
239 PRK05137 tolB translocation pr 99.5 3.7E-11 8.1E-16 103.5 23.4 226 49-333 183-433 (435)
240 PF08662 eIF2A: Eukaryotic tra 99.5 9.7E-12 2.1E-16 93.9 16.6 107 233-357 58-177 (194)
241 KOG0974 WD-repeat protein WDR6 99.4 5.9E-12 1.3E-16 110.7 16.7 179 39-264 99-288 (967)
242 TIGR03300 assembly_YfgL outer 99.4 3.5E-10 7.5E-15 96.0 27.0 177 153-356 191-376 (377)
243 KOG0280 Uncharacterized conser 99.4 2.5E-11 5.4E-16 92.1 16.8 241 29-309 69-335 (339)
244 KOG1912 WD40 repeat protein [G 99.4 1E-10 2.2E-15 100.2 22.1 329 9-357 40-549 (1062)
245 PF10282 Lactonase: Lactonase, 99.4 8.2E-09 1.8E-13 86.1 33.1 268 49-357 14-320 (345)
246 KOG1064 RAVE (regulator of V-A 99.4 8.8E-13 1.9E-17 121.8 10.0 184 139-357 2205-2396(2439)
247 PRK03629 tolB translocation pr 99.4 6.9E-11 1.5E-15 101.2 20.9 208 28-289 197-427 (429)
248 KOG1064 RAVE (regulator of V-A 99.4 1.2E-12 2.6E-17 120.9 10.4 185 73-309 2209-2400(2439)
249 COG5170 CDC55 Serine/threonine 99.4 9.7E-12 2.1E-16 95.1 12.8 273 28-305 25-365 (460)
250 PRK02889 tolB translocation pr 99.4 1.3E-10 2.8E-15 99.7 21.4 178 140-335 193-383 (427)
251 KOG4190 Uncharacterized conser 99.4 2.2E-12 4.9E-17 106.2 9.8 284 21-355 729-1032(1034)
252 TIGR02800 propeller_TolB tol-p 99.4 3.3E-10 7.1E-15 97.7 23.7 170 49-267 171-357 (417)
253 KOG2315 Predicted translation 99.4 4E-10 8.7E-15 93.0 22.4 273 29-357 34-388 (566)
254 TIGR03300 assembly_YfgL outer 99.4 7.2E-10 1.6E-14 94.0 24.9 262 36-357 62-336 (377)
255 KOG1354 Serine/threonine prote 99.4 3.8E-11 8.2E-16 93.1 14.8 255 71-357 24-357 (433)
256 PRK05137 tolB translocation pr 99.4 2.9E-10 6.4E-15 97.9 21.6 174 140-335 199-389 (435)
257 KOG2041 WD40 repeat protein [G 99.4 3.8E-10 8.2E-15 96.1 21.2 275 28-355 13-333 (1189)
258 PRK04922 tolB translocation pr 99.3 3.9E-10 8.5E-15 97.0 20.9 174 140-335 201-391 (433)
259 KOG2041 WD40 repeat protein [G 99.3 1.5E-10 3.3E-15 98.4 17.6 244 71-351 13-280 (1189)
260 KOG1912 WD40 repeat protein [G 99.3 3.4E-10 7.4E-15 97.1 19.5 245 25-308 11-305 (1062)
261 KOG4714 Nucleoporin [Nuclear s 99.3 5.5E-11 1.2E-15 88.7 12.7 234 32-305 39-316 (319)
262 PF10282 Lactonase: Lactonase, 99.3 6.6E-08 1.4E-12 80.7 32.4 251 31-307 38-322 (345)
263 KOG2315 Predicted translation 99.3 6.4E-10 1.4E-14 91.9 19.7 277 31-334 75-412 (566)
264 KOG4190 Uncharacterized conser 99.3 1.7E-11 3.7E-16 101.1 9.9 208 70-309 733-950 (1034)
265 PRK00178 tolB translocation pr 99.3 3.1E-09 6.7E-14 91.8 23.9 229 49-333 180-428 (430)
266 PF04762 IKI3: IKI3 family; I 99.3 1E-08 2.3E-13 94.8 28.3 304 28-357 74-454 (928)
267 PRK04792 tolB translocation pr 99.3 1.9E-09 4.1E-14 92.9 21.8 229 49-333 199-447 (448)
268 KOG4714 Nucleoporin [Nuclear s 99.3 3.7E-10 8E-15 84.4 13.8 204 74-308 38-255 (319)
269 TIGR02800 propeller_TolB tol-p 99.2 2.5E-09 5.4E-14 92.2 20.7 182 140-350 187-385 (417)
270 KOG4532 WD40-like repeat conta 99.2 5.1E-09 1.1E-13 78.8 19.0 244 46-335 49-315 (344)
271 COG5354 Uncharacterized protei 99.2 2.2E-08 4.7E-13 82.2 22.3 294 29-357 32-393 (561)
272 COG2706 3-carboxymuconate cycl 99.2 7.6E-07 1.7E-11 70.4 29.5 262 49-356 17-318 (346)
273 KOG4532 WD40-like repeat conta 99.2 3.4E-09 7.3E-14 79.8 15.7 171 153-335 85-263 (344)
274 PRK11138 outer membrane biogen 99.2 7.1E-08 1.5E-12 82.3 25.4 263 37-356 118-391 (394)
275 PRK00178 tolB translocation pr 99.1 3.2E-08 6.9E-13 85.5 22.9 176 140-335 196-386 (430)
276 KOG0309 Conserved WD40 repeat- 99.1 1.9E-10 4.1E-15 98.1 8.5 205 28-264 113-339 (1081)
277 KOG2695 WD40 repeat protein [G 99.1 4.9E-10 1.1E-14 87.1 9.5 166 156-334 228-404 (425)
278 TIGR02658 TTQ_MADH_Hv methylam 99.1 6.5E-07 1.4E-11 73.3 27.6 262 48-357 27-328 (352)
279 KOG3914 WD repeat protein WDR4 99.1 4.6E-09 1E-13 83.4 13.6 141 39-214 74-225 (390)
280 PRK01029 tolB translocation pr 99.1 1E-07 2.2E-12 81.6 22.4 235 49-334 166-426 (428)
281 KOG0882 Cyclophilin-related pe 99.1 6.3E-09 1.4E-13 84.0 13.9 250 28-310 8-308 (558)
282 COG4946 Uncharacterized protei 99.0 6.1E-07 1.3E-11 73.4 23.6 166 39-253 332-507 (668)
283 KOG1275 PAB-dependent poly(A) 99.0 1E-08 2.2E-13 89.9 14.4 184 39-264 147-342 (1118)
284 PRK11138 outer membrane biogen 99.0 3.1E-07 6.8E-12 78.4 23.3 230 37-310 67-315 (394)
285 PF00400 WD40: WD domain, G-be 99.0 8.5E-10 1.8E-14 59.6 4.9 38 313-357 2-39 (39)
286 PLN02919 haloacid dehalogenase 99.0 1.5E-06 3.3E-11 82.3 29.1 261 33-310 571-891 (1057)
287 PRK04792 tolB translocation pr 99.0 1.8E-07 3.9E-12 80.8 21.4 176 140-335 215-405 (448)
288 KOG2314 Translation initiation 99.0 4.6E-07 1E-11 75.5 22.0 291 33-352 214-560 (698)
289 PF13360 PQQ_2: PQQ-like domai 99.0 5.1E-07 1.1E-11 71.5 22.1 213 91-357 2-228 (238)
290 KOG3914 WD repeat protein WDR4 99.0 2.1E-08 4.5E-13 79.8 13.1 150 187-357 66-221 (390)
291 COG5170 CDC55 Serine/threonine 99.0 2E-08 4.4E-13 77.4 12.5 207 141-357 25-307 (460)
292 PLN02919 haloacid dehalogenase 99.0 1.6E-06 3.4E-11 82.3 27.6 204 144-357 625-886 (1057)
293 KOG1275 PAB-dependent poly(A) 99.0 1E-08 2.2E-13 89.8 12.1 179 150-356 145-339 (1118)
294 PRK01029 tolB translocation pr 99.0 3.7E-07 8.1E-12 78.2 21.5 178 143-335 185-383 (428)
295 PF00400 WD40: WD domain, G-be 99.0 5.5E-09 1.2E-13 56.4 6.7 38 225-262 2-39 (39)
296 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.4E-06 7.4E-11 69.1 25.6 217 39-271 57-337 (352)
297 PF13360 PQQ_2: PQQ-like domai 98.9 5E-06 1.1E-10 65.9 26.4 212 49-310 4-233 (238)
298 COG2706 3-carboxymuconate cycl 98.9 9.7E-06 2.1E-10 64.3 28.8 255 28-308 38-322 (346)
299 PF04762 IKI3: IKI3 family; I 98.9 5E-06 1.1E-10 77.5 28.9 235 71-355 74-375 (928)
300 PF08450 SGL: SMP-30/Gluconola 98.9 1.3E-05 2.8E-10 63.8 28.1 209 77-335 4-238 (246)
301 KOG2695 WD40 repeat protein [G 98.9 7.3E-09 1.6E-13 80.8 7.3 121 141-270 251-382 (425)
302 COG4946 Uncharacterized protei 98.9 8.5E-06 1.8E-10 67.0 24.6 145 148-310 327-480 (668)
303 KOG2066 Vacuolar assembly/sort 98.9 1.8E-07 4E-12 81.2 16.0 187 71-308 38-234 (846)
304 PF15492 Nbas_N: Neuroblastoma 98.9 4.5E-06 9.7E-11 64.2 21.5 205 39-267 9-262 (282)
305 PF08450 SGL: SMP-30/Gluconola 98.8 2.5E-05 5.4E-10 62.1 28.1 212 34-288 4-233 (246)
306 PF15492 Nbas_N: Neuroblastoma 98.8 9.4E-06 2E-10 62.5 22.7 186 143-357 44-257 (282)
307 PF08596 Lgl_C: Lethal giant l 98.8 1.4E-05 3E-10 67.2 24.7 253 74-335 3-319 (395)
308 KOG1645 RING-finger-containing 98.8 2.4E-06 5.1E-11 68.6 17.6 275 28-356 134-458 (463)
309 KOG2314 Translation initiation 98.7 1.5E-05 3.2E-10 66.9 21.6 250 49-357 191-523 (698)
310 KOG2066 Vacuolar assembly/sort 98.7 6.2E-07 1.4E-11 78.0 13.6 146 142-310 39-190 (846)
311 KOG2114 Vacuolar assembly/sort 98.6 1.3E-05 2.7E-10 70.8 20.4 202 31-267 27-246 (933)
312 KOG1832 HIV-1 Vpr-binding prot 98.6 3.5E-08 7.6E-13 86.6 5.0 193 14-268 1091-1295(1516)
313 KOG0882 Cyclophilin-related pe 98.6 5E-07 1.1E-11 73.4 10.9 205 71-310 8-234 (558)
314 KOG2114 Vacuolar assembly/sort 98.6 1.1E-05 2.4E-10 71.1 19.8 209 74-324 27-258 (933)
315 PF11768 DUF3312: Protein of u 98.6 8.1E-05 1.8E-09 63.3 24.1 89 165-265 239-330 (545)
316 COG5354 Uncharacterized protei 98.6 2.6E-05 5.5E-10 64.7 20.1 246 51-356 15-303 (561)
317 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00017 3.8E-09 55.0 21.9 107 39-178 23-131 (354)
318 cd00216 PQQ_DH Dehydrogenases 98.5 0.0002 4.3E-09 62.9 24.9 199 39-272 61-327 (488)
319 PF11768 DUF3312: Protein of u 98.5 0.00062 1.3E-08 58.2 26.3 69 277-357 257-327 (545)
320 KOG1008 Uncharacterized conser 98.5 6.9E-08 1.5E-12 81.7 2.2 194 72-307 56-275 (783)
321 KOG1645 RING-finger-containing 98.5 2E-05 4.3E-10 63.5 15.5 72 28-104 192-270 (463)
322 KOG1920 IkappaB kinase complex 98.4 0.00018 3.9E-09 66.3 23.0 237 28-309 67-324 (1265)
323 PF04053 Coatomer_WDAD: Coatom 98.4 0.00022 4.7E-09 61.0 22.4 216 71-356 31-259 (443)
324 KOG3621 WD40 repeat-containing 98.4 0.00021 4.5E-09 62.0 21.5 152 31-212 37-197 (726)
325 KOG1008 Uncharacterized conser 98.4 3.5E-07 7.7E-12 77.6 5.0 194 29-264 56-275 (783)
326 PRK04043 tolB translocation pr 98.4 0.00046 1E-08 59.1 23.3 168 49-268 170-361 (419)
327 PF03178 CPSF_A: CPSF A subuni 98.4 0.00021 4.6E-09 59.3 20.6 179 162-356 2-199 (321)
328 KOG1920 IkappaB kinase complex 98.3 0.00048 1E-08 63.6 22.7 234 72-356 68-319 (1265)
329 PF06977 SdiA-regulated: SdiA- 98.3 0.0008 1.7E-08 52.7 21.6 194 140-335 19-234 (248)
330 PRK04043 tolB translocation pr 98.3 0.00035 7.5E-09 59.9 21.0 170 144-335 189-380 (419)
331 PF14783 BBS2_Mid: Ciliary BBS 98.3 8.9E-05 1.9E-09 49.0 13.2 99 145-260 2-110 (111)
332 KOG1832 HIV-1 Vpr-binding prot 98.3 7.5E-07 1.6E-11 78.6 4.6 177 136-335 1095-1279(1516)
333 PF07433 DUF1513: Protein of u 98.3 0.0012 2.5E-08 52.7 24.0 234 73-351 5-278 (305)
334 PF03178 CPSF_A: CPSF A subuni 98.3 0.0012 2.7E-08 54.8 23.0 178 162-354 62-260 (321)
335 cd00216 PQQ_DH Dehydrogenases 98.3 0.0013 2.8E-08 57.9 23.8 240 40-310 111-427 (488)
336 KOG3621 WD40 repeat-containing 98.2 1.8E-05 3.9E-10 68.3 11.4 145 145-294 38-185 (726)
337 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0012 2.6E-08 56.5 22.5 49 49-102 62-111 (410)
338 PF08553 VID27: VID27 cytoplas 98.2 0.00014 3E-09 65.8 17.1 134 49-212 505-647 (794)
339 PF14783 BBS2_Mid: Ciliary BBS 98.2 0.00043 9.2E-09 45.9 13.9 104 237-355 2-110 (111)
340 PF08596 Lgl_C: Lethal giant l 98.1 0.0048 1E-07 52.2 22.6 198 144-356 3-287 (395)
341 PF07433 DUF1513: Protein of u 98.1 0.0034 7.4E-08 50.2 22.6 237 39-301 17-279 (305)
342 KOG3617 WD40 and TPR repeat-co 98.1 0.00037 8E-09 62.1 15.8 97 39-171 27-132 (1416)
343 smart00320 WD40 WD40 repeats. 98.0 1.7E-05 3.6E-10 42.1 5.1 38 313-357 3-40 (40)
344 KOG3617 WD40 and TPR repeat-co 98.0 4.1E-05 8.8E-10 67.8 9.1 107 148-267 21-134 (1416)
345 KOG2444 WD40 repeat protein [G 98.0 1.5E-05 3.2E-10 59.4 5.3 137 197-357 33-175 (238)
346 PF08553 VID27: VID27 cytoplas 98.0 0.00023 5E-09 64.5 13.5 100 153-263 543-646 (794)
347 PF04053 Coatomer_WDAD: Coatom 97.9 0.0076 1.6E-07 51.9 21.4 226 28-307 31-262 (443)
348 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.0061 1.3E-07 46.9 22.3 64 39-107 63-130 (354)
349 smart00320 WD40 WD40 repeats. 97.9 5.6E-05 1.2E-09 39.9 5.5 37 226-262 4-40 (40)
350 PF06977 SdiA-regulated: SdiA- 97.8 0.01 2.3E-07 46.6 21.3 203 71-304 20-247 (248)
351 KOG4640 Anaphase-promoting com 97.8 0.00025 5.4E-09 60.8 9.9 96 182-290 19-116 (665)
352 PHA02713 hypothetical protein; 97.8 0.0089 1.9E-07 53.6 19.7 183 153-357 305-531 (557)
353 KOG1897 Damage-specific DNA bi 97.7 0.035 7.5E-07 51.0 27.3 106 237-355 777-894 (1096)
354 COG5276 Uncharacterized conser 97.7 0.014 2.9E-07 46.0 26.5 280 29-357 86-367 (370)
355 COG3386 Gluconolactonase [Carb 97.7 0.018 3.9E-07 47.0 21.5 163 153-332 78-264 (307)
356 PRK02888 nitrous-oxide reducta 97.7 0.024 5.1E-07 50.2 21.0 75 233-308 319-405 (635)
357 PRK02888 nitrous-oxide reducta 97.7 0.011 2.3E-07 52.2 18.9 64 286-357 329-402 (635)
358 PF00780 CNH: CNH domain; Int 97.7 0.021 4.5E-07 46.3 24.7 143 83-268 8-169 (275)
359 KOG2395 Protein involved in va 97.7 0.0019 4.1E-08 54.6 13.0 143 41-213 348-501 (644)
360 PF00780 CNH: CNH domain; Int 97.6 0.027 5.8E-07 45.7 24.2 246 39-319 7-264 (275)
361 PHA02713 hypothetical protein; 97.5 0.024 5.3E-07 50.8 19.5 65 245-309 463-535 (557)
362 KOG2444 WD40 repeat protein [G 97.5 0.00036 7.9E-09 52.3 6.6 105 153-267 71-180 (238)
363 KOG4640 Anaphase-promoting com 97.5 0.00048 1E-08 59.2 7.6 91 142-244 20-115 (665)
364 PF04841 Vps16_N: Vps16, N-ter 97.5 0.054 1.2E-06 46.6 24.7 179 143-335 81-272 (410)
365 KOG2079 Vacuolar assembly/sort 97.4 0.012 2.7E-07 54.3 15.6 79 30-111 90-171 (1206)
366 KOG4441 Proteins containing BT 97.4 0.033 7.2E-07 50.0 18.4 186 145-352 325-534 (571)
367 PF06433 Me-amine-dh_H: Methyl 97.3 0.079 1.7E-06 43.3 25.3 261 49-357 18-318 (342)
368 PF14870 PSII_BNR: Photosynthe 97.2 0.078 1.7E-06 43.1 31.5 278 28-356 15-301 (302)
369 PF06433 Me-amine-dh_H: Methyl 97.2 0.081 1.7E-06 43.2 22.4 152 153-316 148-329 (342)
370 PF05694 SBP56: 56kDa selenium 97.2 0.11 2.5E-06 43.7 20.0 109 160-273 220-351 (461)
371 PF14583 Pectate_lyase22: Olig 97.1 0.12 2.5E-06 43.2 23.0 175 161-356 167-378 (386)
372 KOG2079 Vacuolar assembly/sort 97.1 0.0019 4.2E-08 59.2 7.6 99 196-305 101-201 (1206)
373 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0024 5.3E-08 35.3 5.2 31 234-264 11-41 (47)
374 KOG2395 Protein involved in va 97.1 0.016 3.5E-07 49.3 12.2 124 197-335 349-484 (644)
375 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.1 0.19 4.1E-06 44.9 26.5 69 39-108 69-146 (527)
376 COG3204 Uncharacterized protei 97.0 0.11 2.4E-06 41.2 17.6 169 140-308 83-264 (316)
377 KOG4441 Proteins containing BT 97.0 0.24 5.2E-06 44.6 21.1 226 39-309 285-548 (571)
378 COG3386 Gluconolactonase [Carb 96.9 0.17 3.7E-06 41.4 20.8 117 164-289 145-264 (307)
379 PF14870 PSII_BNR: Photosynthe 96.9 0.17 3.7E-06 41.2 26.1 155 142-304 144-301 (302)
380 KOG4499 Ca2+-binding protein R 96.9 0.12 2.7E-06 39.4 14.9 136 183-333 108-264 (310)
381 PRK13684 Ycf48-like protein; P 96.9 0.2 4.4E-06 41.8 30.5 157 181-357 170-329 (334)
382 COG0823 TolB Periplasmic compo 96.9 0.18 3.9E-06 43.5 17.0 172 49-267 174-361 (425)
383 COG0823 TolB Periplasmic compo 96.7 0.15 3.2E-06 44.0 15.4 134 162-310 218-361 (425)
384 PHA03098 kelch-like protein; P 96.7 0.44 9.5E-06 43.0 20.2 73 245-319 437-522 (534)
385 KOG1916 Nuclear protein, conta 96.6 0.00022 4.8E-09 63.8 -2.0 158 139-309 129-325 (1283)
386 COG3391 Uncharacterized conser 96.6 0.38 8.1E-06 41.2 19.9 175 146-335 77-265 (381)
387 COG3391 Uncharacterized conser 96.6 0.38 8.3E-06 41.1 21.7 216 75-333 76-309 (381)
388 KOG3630 Nuclear pore complex, 96.5 0.071 1.5E-06 50.0 12.7 125 155-290 117-254 (1405)
389 PHA03098 kelch-like protein; P 96.5 0.43 9.3E-06 43.0 17.9 64 245-309 389-466 (534)
390 PF14727 PHTB1_N: PTHB1 N-term 96.5 0.47 1E-05 40.6 17.6 143 196-356 39-201 (418)
391 KOG2280 Vacuolar assembly/sort 96.5 0.65 1.4E-05 42.0 18.8 178 49-268 65-250 (829)
392 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.5 0.62 1.3E-05 41.7 21.1 210 82-311 69-337 (527)
393 PF12894 Apc4_WD40: Anaphase-p 96.3 0.0091 2E-07 33.0 3.9 28 322-356 11-38 (47)
394 PF14727 PHTB1_N: PTHB1 N-term 96.3 0.59 1.3E-05 40.0 26.5 278 39-355 37-356 (418)
395 KOG2247 WD40 repeat-containing 96.3 0.00021 4.5E-09 59.6 -4.0 245 39-331 46-304 (615)
396 KOG2280 Vacuolar assembly/sort 96.3 0.74 1.6E-05 41.6 16.8 68 143-212 44-112 (829)
397 PRK13616 lipoprotein LpqB; Pro 96.2 0.6 1.3E-05 42.3 16.4 182 143-333 350-551 (591)
398 PRK13616 lipoprotein LpqB; Pro 96.2 0.97 2.1E-05 41.0 19.4 135 161-304 429-565 (591)
399 PF10647 Gmad1: Lipoprotein Lp 96.1 0.54 1.2E-05 37.5 16.3 138 185-335 25-178 (253)
400 PF12234 Rav1p_C: RAVE protein 96.1 0.64 1.4E-05 41.9 15.9 119 228-357 23-154 (631)
401 KOG2377 Uncharacterized conser 96.1 0.21 4.7E-06 42.1 12.2 139 187-335 26-166 (657)
402 TIGR03074 PQQ_membr_DH membran 96.0 1.3 2.8E-05 41.5 21.0 69 39-108 194-286 (764)
403 PF00930 DPPIV_N: Dipeptidyl p 95.9 0.89 1.9E-05 38.5 22.5 51 49-104 24-75 (353)
404 PF05096 Glu_cyclase_2: Glutam 95.8 0.74 1.6E-05 36.4 23.0 186 143-348 45-250 (264)
405 KOG3630 Nuclear pore complex, 95.6 0.085 1.8E-06 49.5 8.8 101 143-251 156-260 (1405)
406 PRK13684 Ycf48-like protein; P 95.5 1.2 2.7E-05 37.2 23.7 155 142-306 172-330 (334)
407 PF08728 CRT10: CRT10; InterP 95.4 1 2.2E-05 41.2 14.6 120 236-357 102-244 (717)
408 PF12234 Rav1p_C: RAVE protein 95.4 1.1 2.4E-05 40.5 14.6 109 153-264 41-156 (631)
409 PF07995 GSDH: Glucose / Sorbo 95.4 1.4 3E-05 36.9 26.2 58 290-354 272-330 (331)
410 COG3204 Uncharacterized protei 95.3 1.2 2.5E-05 35.7 18.2 165 71-265 84-264 (316)
411 TIGR02604 Piru_Ver_Nterm putat 95.2 1.7 3.6E-05 37.1 16.1 140 184-335 14-196 (367)
412 PF02897 Peptidase_S9_N: Proly 95.2 1.9 4.1E-05 37.4 23.1 191 144-352 125-348 (414)
413 PF08728 CRT10: CRT10; InterP 95.2 1.1 2.5E-05 40.9 14.1 152 153-306 50-245 (717)
414 PF10313 DUF2415: Uncharacteri 95.1 0.11 2.3E-06 27.9 4.7 32 235-266 1-35 (43)
415 KOG1897 Damage-specific DNA bi 95.1 3.1 6.7E-05 39.2 25.3 184 39-264 461-659 (1096)
416 KOG1900 Nuclear pore complex, 95.1 0.64 1.4E-05 44.8 12.6 162 71-265 77-273 (1311)
417 COG5167 VID27 Protein involved 94.9 0.91 2E-05 39.2 12.0 143 39-213 479-633 (776)
418 KOG2377 Uncharacterized conser 94.8 0.81 1.8E-05 38.9 11.4 152 145-306 25-184 (657)
419 PF15390 DUF4613: Domain of un 94.8 2.1 4.5E-05 37.9 14.1 149 184-357 20-184 (671)
420 PF07569 Hira: TUP1-like enhan 94.7 0.34 7.3E-06 37.6 8.7 70 143-212 13-95 (219)
421 PHA02790 Kelch-like protein; P 94.6 3.2 6.9E-05 36.9 17.9 140 153-309 320-472 (480)
422 COG5276 Uncharacterized conser 94.3 2.3 4.9E-05 34.1 24.0 256 3-306 107-368 (370)
423 PHA02790 Kelch-like protein; P 94.3 3.7 8E-05 36.5 17.3 171 153-350 273-456 (480)
424 PF10168 Nup88: Nuclear pore c 94.2 4.8 0.0001 37.6 16.2 81 235-316 85-188 (717)
425 PF10168 Nup88: Nuclear pore c 94.1 2.4 5.2E-05 39.4 14.0 86 183-269 84-184 (717)
426 KOG1900 Nuclear pore complex, 93.9 2.5 5.5E-05 41.0 13.8 148 156-308 93-273 (1311)
427 COG3490 Uncharacterized protei 93.9 2.7 5.9E-05 33.5 19.0 210 71-310 66-313 (366)
428 KOG1916 Nuclear protein, conta 93.7 0.17 3.6E-06 46.5 5.8 188 161-357 110-321 (1283)
429 PF07569 Hira: TUP1-like enhan 93.6 0.68 1.5E-05 36.0 8.4 70 280-357 13-93 (219)
430 PF02897 Peptidase_S9_N: Proly 93.6 4.5 9.9E-05 35.1 26.6 195 75-307 126-357 (414)
431 COG5167 VID27 Protein involved 93.6 2.3 5E-05 36.9 11.7 124 197-335 483-616 (776)
432 PF15390 DUF4613: Domain of un 93.4 5.3 0.00012 35.5 15.9 120 71-212 55-186 (671)
433 PF12768 Rax2: Cortical protei 93.3 3.8 8.2E-05 33.2 14.3 132 203-348 15-169 (281)
434 PF05694 SBP56: 56kDa selenium 93.1 5.1 0.00011 34.4 17.0 188 153-357 88-340 (461)
435 KOG2247 WD40 repeat-containing 92.9 0.014 3.1E-07 49.2 -1.8 143 185-353 36-182 (615)
436 PF07995 GSDH: Glucose / Sorbo 92.8 5.2 0.00011 33.6 15.2 109 144-255 3-134 (331)
437 KOG4460 Nuclear pore complex, 92.8 6.4 0.00014 34.5 13.7 25 144-168 105-131 (741)
438 PF12657 TFIIIC_delta: Transcr 92.6 1.4 3.1E-05 32.8 8.6 34 323-357 86-119 (173)
439 PF10313 DUF2415: Uncharacteri 92.6 0.52 1.1E-05 25.3 4.4 29 143-171 1-34 (43)
440 PF14655 RAB3GAP2_N: Rab3 GTPa 92.1 7.2 0.00016 33.6 26.4 78 230-310 303-401 (415)
441 TIGR02604 Piru_Ver_Nterm putat 92.1 6.7 0.00014 33.5 13.1 18 236-253 185-202 (367)
442 KOG3616 Selective LIM binding 92.0 4.7 0.0001 37.0 12.0 69 28-101 13-84 (1636)
443 PF08801 Nucleoporin_N: Nup133 91.9 8 0.00017 33.8 14.5 31 235-265 190-220 (422)
444 PF05096 Glu_cyclase_2: Glutam 91.3 6.4 0.00014 31.4 22.7 199 13-253 32-249 (264)
445 COG3292 Predicted periplasmic 91.2 11 0.00023 33.6 16.4 270 28-354 163-442 (671)
446 COG3292 Predicted periplasmic 91.0 11 0.00024 33.5 13.9 152 71-262 163-316 (671)
447 PF00930 DPPIV_N: Dipeptidyl p 90.6 9.7 0.00021 32.3 19.3 189 142-335 42-293 (353)
448 PLN00033 photosystem II stabil 90.3 11 0.00024 32.5 17.3 110 142-261 280-396 (398)
449 PF12657 TFIIIC_delta: Transcr 90.3 3.6 7.9E-05 30.6 8.7 29 143-171 86-122 (173)
450 COG3490 Uncharacterized protei 90.1 6.4 0.00014 31.6 9.8 96 238-335 71-174 (366)
451 COG1520 FOG: WD40-like repeat 90.0 11 0.00025 32.1 14.5 107 153-270 69-177 (370)
452 TIGR03074 PQQ_membr_DH membran 89.6 19 0.00042 34.1 19.1 62 153-214 195-280 (764)
453 PF14781 BBS2_N: Ciliary BBSom 89.3 5.8 0.00012 27.8 10.5 63 36-104 5-85 (136)
454 PF02333 Phytase: Phytase; In 88.7 14 0.0003 31.4 24.0 191 153-357 69-288 (381)
455 PLN02153 epithiospecifier prot 88.3 14 0.00031 31.1 21.8 53 256-309 217-286 (341)
456 PLN00033 photosystem II stabil 88.0 17 0.00036 31.5 29.4 150 186-356 241-396 (398)
457 PF14655 RAB3GAP2_N: Rab3 GTPa 87.9 11 0.00024 32.5 10.8 37 142-178 307-345 (415)
458 KOG1898 Splicing factor 3b, su 87.7 28 0.00061 33.7 16.7 102 240-353 939-1042(1205)
459 KOG4499 Ca2+-binding protein R 87.5 12 0.00026 29.2 16.4 99 186-290 160-264 (310)
460 PF14761 HPS3_N: Hermansky-Pud 87.2 12 0.00025 28.8 13.9 155 147-306 22-213 (215)
461 PF14781 BBS2_N: Ciliary BBSom 86.5 9.1 0.0002 26.8 11.6 102 153-267 11-128 (136)
462 PF11715 Nup160: Nucleoporin N 86.4 4.9 0.00011 36.5 8.6 68 244-311 156-252 (547)
463 PF12341 DUF3639: Protein of u 86.2 2.5 5.4E-05 20.1 3.5 25 281-305 3-27 (27)
464 KOG3522 Predicted guanine nucl 86.0 8.5 0.00018 35.8 9.4 144 85-265 550-698 (925)
465 PF11715 Nup160: Nucleoporin N 85.7 12 0.00026 34.0 10.7 76 195-270 159-254 (547)
466 TIGR03547 muta_rot_YjhT mutatr 85.7 21 0.00045 30.2 22.3 12 162-173 168-179 (346)
467 TIGR03548 mutarot_permut cycli 85.6 20 0.00043 29.9 21.8 24 244-267 170-197 (323)
468 PF14761 HPS3_N: Hermansky-Pud 85.6 14 0.00031 28.3 15.4 29 183-212 134-163 (215)
469 KOG3522 Predicted guanine nucl 85.6 3 6.4E-05 38.6 6.4 151 148-308 542-698 (925)
470 PF10214 Rrn6: RNA polymerase 84.6 39 0.00084 32.4 18.7 200 140-346 35-266 (765)
471 PRK14131 N-acetylneuraminic ac 83.5 28 0.0006 29.9 22.8 40 258-298 314-353 (376)
472 TIGR03118 PEPCTERM_chp_1 conse 83.4 23 0.00051 29.0 21.6 219 32-288 25-306 (336)
473 TIGR03548 mutarot_permut cycli 83.4 25 0.00055 29.3 22.0 58 153-212 125-194 (323)
474 PLN02193 nitrile-specifier pro 83.3 33 0.00071 30.6 21.7 64 245-309 328-412 (470)
475 TIGR03606 non_repeat_PQQ dehyd 83.1 32 0.00069 30.3 13.9 58 234-291 29-90 (454)
476 PF14583 Pectate_lyase22: Olig 82.7 29 0.00064 29.6 12.1 90 168-269 16-115 (386)
477 PF14779 BBS1: Ciliary BBSome 82.6 23 0.0005 28.3 14.2 69 140-209 174-255 (257)
478 KOG1896 mRNA cleavage and poly 82.5 54 0.0012 32.5 25.8 185 161-356 1003-1210(1366)
479 PF08801 Nucleoporin_N: Nup133 82.2 34 0.00073 29.9 13.3 27 324-357 191-217 (422)
480 KOG1983 Tomosyn and related SN 82.1 14 0.00031 36.2 9.8 30 142-171 35-66 (993)
481 KOG4460 Nuclear pore complex, 81.7 37 0.00081 30.1 12.5 75 235-309 104-200 (741)
482 PF01436 NHL: NHL repeat; Int 80.9 4.7 0.0001 19.2 4.2 25 237-261 4-28 (28)
483 PF01731 Arylesterase: Arylest 80.6 12 0.00027 23.9 6.7 31 235-265 54-85 (86)
484 PRK10115 protease 2; Provision 79.6 56 0.0012 30.8 23.7 111 143-264 127-255 (686)
485 smart00564 PQQ beta-propeller 79.5 2.8 6.1E-05 20.7 2.6 25 153-177 7-31 (33)
486 TIGR03118 PEPCTERM_chp_1 conse 79.2 34 0.00074 28.1 24.0 195 153-350 101-325 (336)
487 KOG1983 Tomosyn and related SN 78.7 54 0.0012 32.5 12.4 25 243-267 243-267 (993)
488 PF01011 PQQ: PQQ enzyme repea 78.1 2.8 6E-05 21.8 2.3 26 154-179 2-27 (38)
489 PF07676 PD40: WD40-like Beta 77.5 8.1 0.00018 20.0 4.5 30 321-356 7-38 (39)
490 KOG3616 Selective LIM binding 77.0 9.9 0.00021 35.0 6.6 108 71-210 13-124 (1636)
491 PF10433 MMS1_N: Mono-function 75.7 61 0.0013 29.2 20.2 203 30-244 256-503 (504)
492 PF12768 Rax2: Cortical protei 74.9 45 0.00097 27.3 11.6 51 49-103 17-75 (281)
493 PF07250 Glyoxal_oxid_N: Glyox 73.6 44 0.00095 26.6 10.8 138 164-309 48-199 (243)
494 PF13570 PQQ_3: PQQ-like domai 73.5 7.5 0.00016 20.3 3.3 21 245-265 20-40 (40)
495 PF14269 Arylsulfotran_2: Aryl 73.0 24 0.00052 29.1 7.6 67 237-306 146-219 (299)
496 COG4590 ABC-type uncharacteriz 72.9 22 0.00048 30.8 7.3 159 180-356 217-383 (733)
497 TIGR02276 beta_rpt_yvtn 40-res 72.7 12 0.00025 19.6 4.3 28 39-67 3-32 (42)
498 COG3823 Glutamine cyclotransfe 72.4 42 0.00091 25.9 11.3 100 153-266 57-160 (262)
499 COG3823 Glutamine cyclotransfe 71.2 45 0.00098 25.7 13.3 116 28-178 42-166 (262)
500 KOG1896 mRNA cleavage and poly 70.8 1.2E+02 0.0026 30.4 18.0 142 153-307 1047-1213(1366)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-57 Score=346.89 Aligned_cols=294 Identities=22% Similarity=0.374 Sum_probs=263.0
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
+..+|...+.+ |.++|.|++|+ |..||+|+.| ++|+||+ .+..+..+.++ |...|.|++|+||+ |+
T Consensus 103 pvtrCssS~~G-----H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~-~TeTp~~t~Kg---H~~WVlcvawsPDgk~iA 173 (480)
T KOG0271|consen 103 PVTRCSSSIAG-----HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDL-DTETPLFTCKG---HKNWVLCVAWSPDGKKIA 173 (480)
T ss_pred ccceeccccCC-----CCCcEEEEEecCCCceEEecCCCceEEeecc-CCCCcceeecC---CccEEEEEEECCCcchhh
Confidence 56678888886 99999999999 9999999999 9999999 99999999999 99999999999998 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-------CeEEEEe
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-------GLMYSVS 159 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~~~~ 159 (357)
+|+.||+|++||..++++.. .. +.+|...|++++|.| .+|++++
T Consensus 174 SG~~dg~I~lwdpktg~~~g--~~---------------------------l~gH~K~It~Lawep~hl~p~~r~las~s 224 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQIG--RA---------------------------LRGHKKWITALAWEPLHLVPPCRRLASSS 224 (480)
T ss_pred ccccCCeEEEecCCCCCccc--cc---------------------------ccCcccceeEEeecccccCCCccceeccc
Confidence 99999999999999887543 22 239999999999998 7899999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc---------------------
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK--------------------- 218 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--------------------- 218 (357)
.||.++|||+..++++..+ .+|..+|+|++|--+|++++|+.|++|++|+...+....
T Consensus 225 kDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 225 KDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhh
Confidence 9999999999999999999 899999999999999999999999999999976421100
Q ss_pred ------cc------------------------------------------ccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 219 ------ER------------------------------------------KSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 219 ------~~------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.+ ....+++..+.+|+.-|+.+.|+||+++++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 00 012234456678999999999999999999
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
+++.|+.|++||.++++ .+..+.+|-.+|..++|+.+ +|++|+.|.++++|++++. +....+.+|.+.|.++
T Consensus 384 SaSFDkSVkLW~g~tGk---~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---Kl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRTGK---FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---KLKQDLPGHADEVFAV 457 (480)
T ss_pred EeecccceeeeeCCCcc---hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee---eecccCCCCCceEEEE
Confidence 99999999999999998 66788899999999999988 9999999999999999986 7778899999999999
Q ss_pred EEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 329 VAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|+||+. .+++|+.|..+++|-
T Consensus 458 DwspDG~-------rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 458 DWSPDGQ-------RVASGGKDKVLRLWR 479 (480)
T ss_pred EecCCCc-------eeecCCCceEEEeec
Confidence 9999999 999999999999993
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-51 Score=317.46 Aligned_cols=272 Identities=22% Similarity=0.357 Sum_probs=252.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC--c--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT--K--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~--l~~~~~d~~i~vwd~~ 100 (357)
-+.+|..+.|+ ++.||||+.+ .++||+. .+...+++|.+ |...|.++.|+|. . ++||+.||++++|+++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~-~~~~~~~~l~g---H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSV-PQCNLLQTLRG---HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeec-CCcceeEEEec---cccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 67899999999 9999999999 9999999 88899999999 9999999999997 2 9999999999999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+...+..+. +|...|..++|+| ++|+|++.|.+-++||++++..+...
T Consensus 250 ~e~~l~~l~------------------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q 299 (459)
T KOG0272|consen 250 QETPLQDLE------------------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ 299 (459)
T ss_pred CCcchhhhh------------------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhHhh
Confidence 875544433 9999999999999 99999999999999999999888777
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.+|...|.+++|.+|| .+++|+.|..-+|||++ ....+..+.+|..+|.+++|+|+|..|++|+.|++
T Consensus 300 -EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlR----------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 300 -EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLR----------TGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred -cccccccceeEecCCCceeeccCccchhheeecc----------cCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 8999999999999999 68899999999999999 67788899999999999999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
++|||++.... ...+.+|.+-|..+.|+|. +|+|++.|+++++|..++. .++..+.||.+.|.+++.++++
T Consensus 369 ~kVWDLR~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 369 CKVWDLRMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred EEEeeeccccc---ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCC
Confidence 99999997764 6677889999999999874 9999999999999999986 8899999999999999999999
Q ss_pred CCCCCCeEEEEEcCCCCeEEecC
Q 038568 335 SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. +++|++.|.++++|.
T Consensus 443 ~-------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 Q-------AIATSSFDRTIKLWR 458 (459)
T ss_pred c-------eEEEeccCceeeecc
Confidence 9 999999999999994
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.7e-46 Score=275.77 Aligned_cols=288 Identities=18% Similarity=0.262 Sum_probs=252.2
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~ 89 (357)
+..++|++ |.+.|.++.|+ .++|++++.| .+.|||. -+....+.++. ....|..++|+|.+ +++|+
T Consensus 46 ~~rr~LkG-----H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs-~TtnK~haipl---~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 46 RTRRTLKG-----HLNKIYAMDWSTDSRRIVSASQDGKLIVWDS-FTTNKVHAIPL---PSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred eeEEEecc-----cccceeeeEecCCcCeEEeeccCCeEEEEEc-ccccceeEEec---CceeEEEEEECCCCCeEEecC
Confidence 34466775 99999999999 8999999999 9999999 77778888887 88899999999987 89999
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEE
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd 168 (357)
.|+...||++.+.+........ +.+.+|.+.+.|+.|.+ ..|++++.|.+..+||
T Consensus 117 LdN~Csiy~ls~~d~~g~~~v~------------------------r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDAEGNVRVS------------------------RELAGHTGYLSCCRFLDDNHILTGSGDMTCALWD 172 (343)
T ss_pred cCceeEEEecccccccccceee------------------------eeecCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence 9999999999865321111110 23349999999999999 9999999999999999
Q ss_pred cCcchhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
+++++.+..| .+|...|.++.++| ++ .+++|+.|+..++||+| .....+.+.+|.+.|+++.|.|+|
T Consensus 173 ie~g~~~~~f-~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R----------~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 173 IETGQQTQVF-HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR----------SGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred cccceEEEEe-cCCcccEEEEecCCCCCCeEEecccccceeeeecc----------CcceeEeecccccccceEEEccCC
Confidence 9999999999 89999999999999 55 59999999999999999 567889999999999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
.-+++|+.|++.++||++..+++.... ...-..+|++++|+ +++|++|..|..+.+||.-.+ +.+..+.+|...
T Consensus 242 ~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNR 317 (343)
T KOG0286|consen 242 DAFATGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENR 317 (343)
T ss_pred CeeeecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCe
Confidence 999999999999999999988764443 33345567888775 569999999999999999987 667888899999
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+++..+||+. .++|||.|..+|||.
T Consensus 318 vScl~~s~DG~-------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 318 VSCLGVSPDGM-------AVATGSWDSTLRIWA 343 (343)
T ss_pred eEEEEECCCCc-------EEEecchhHheeecC
Confidence 99999999998 999999999999995
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-44 Score=263.01 Aligned_cols=283 Identities=21% Similarity=0.339 Sum_probs=234.0
Q ss_pred eecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEecc----CCccccceeccccCCCCceEEEEEecCc--
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLI----SDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~----~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
....++++ |++.|+.++.. .+.+++++.| .+.+|++. +.+.+++.+.+ |...|..++.++++
T Consensus 6 ~l~~tl~g-----h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G---HsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 6 VLRGTLEG-----HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG---HSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeeeecC-----CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec---cceEecceEEccCCce
Confidence 34445665 99999999998 6899999999 99999983 22566888888 99999999999987
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
.++++.|+++++||+.+++..+.+. +|...|.+++|++ ..+++|+.|.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f~------------------------------GH~~dVlsva~s~dn~qivSGSrDk 127 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRFV------------------------------GHTKDVLSVAFSTDNRQIVSGSRDK 127 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEEE------------------------------ecCCceEEEEecCCCceeecCCCcc
Confidence 8999999999999999986554443 9999999999999 8999999999
Q ss_pred eEEEEEcCcchhhhhcccc-ccccEEEEEEecCC---eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 163 SFKIWNASNYKCLESVNKA-HEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
+|++||+.. .+..++... +.+.|.|++|+|+. .|++++.|++|++||++ ..+....+.+|.+.++
T Consensus 128 Tiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~----------~~~l~~~~~gh~~~v~ 196 (315)
T KOG0279|consen 128 TIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLR----------NCQLRTTFIGHSGYVN 196 (315)
T ss_pred eeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccC----------CcchhhccccccccEE
Confidence 999999864 444444233 37899999999985 59999999999999998 6677788899999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
.++++|||.++++|+.||.+.+||++.++.+. . .+|...|.+++|+|+ +.++...+..|+|||++++.....+..
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---s-l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---S-LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCceeE---e-ccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc
Confidence 99999999999999999999999999988633 2 357889999999999 555556666799999998742222111
Q ss_pred ------ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 ------LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ------~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+...-...+++|++++. .|++|-.|+.|++|.
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~-------tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQ-------TLFAGYTDNVIRVWQ 311 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCc-------EEEeeecCCcEEEEE
Confidence 111122356889999998 999999999999995
No 5
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-44 Score=273.83 Aligned_cols=285 Identities=20% Similarity=0.340 Sum_probs=254.5
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.++++.+.+++ |.+.|.|+++. +.+|++|+.| +|+|||+ .++++..++.+ |...|..+++++.. ++
T Consensus 139 apwKl~rVi~g-----HlgWVr~vavdP~n~wf~tgs~DrtikIwDl-atg~LkltltG---hi~~vr~vavS~rHpYlF 209 (460)
T KOG0285|consen 139 APWKLYRVISG-----HLGWVRSVAVDPGNEWFATGSADRTIKIWDL-ATGQLKLTLTG---HIETVRGVAVSKRHPYLF 209 (460)
T ss_pred Ccceehhhhhh-----ccceEEEEeeCCCceeEEecCCCceeEEEEc-ccCeEEEeecc---hhheeeeeeecccCceEE
Confidence 36788888887 99999999999 8899999999 9999999 99999999998 99999999999875 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+++.|+.|+.||++..+.++... +|-+.|.+++.+| +.|++|+.|.++
T Consensus 210 s~gedk~VKCwDLe~nkvIR~Yh------------------------------GHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 210 SAGEDKQVKCWDLEYNKVIRHYH------------------------------GHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred EecCCCeeEEEechhhhhHHHhc------------------------------cccceeEEEeccccceeEEecCCcceE
Confidence 99999999999999887665443 9999999999999 999999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
++||+++...+..+ .+|..+|..+.+.|-+ ++++|+.|++|++||++ .++....+..|...|.+++.+
T Consensus 260 RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~----------agkt~~tlt~hkksvral~lh 328 (460)
T KOG0285|consen 260 RVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR----------AGKTMITLTHHKKSVRALCLH 328 (460)
T ss_pred EEeeecccceEEEe-cCCCCcceeEEeecCCCceEEecCCceEEEeeec----------cCceeEeeecccceeeEEecC
Confidence 99999999999999 8999999999998854 89999999999999998 556677788899999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecC--
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEG-- 320 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-- 320 (357)
|....+++++.|. |+.|++..+. ....+.+|...+.+++.+.+ ++++|+++|.+..||.+++..++.......
T Consensus 329 P~e~~fASas~dn-ik~w~~p~g~---f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG 404 (460)
T KOG0285|consen 329 PKENLFASASPDN-IKQWKLPEGE---FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG 404 (460)
T ss_pred CchhhhhccCCcc-ceeccCCccc---hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCC
Confidence 9999999999887 9999999887 45568899999999998777 999999999999999999866655543322
Q ss_pred ---CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 321 ---HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 321 ---h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....|.+.+|...+. .|+||..|.+|++|.
T Consensus 405 Sl~sEagI~as~fDktg~-------rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 405 SLESEAGIFASCFDKTGS-------RLITGEADKTIKMYK 437 (460)
T ss_pred ccccccceeEEeecccCc-------eEEeccCCcceEEEe
Confidence 235689999999998 999999999999994
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.5e-43 Score=262.19 Aligned_cols=283 Identities=23% Similarity=0.311 Sum_probs=245.4
Q ss_pred ecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ 90 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~ 90 (357)
+...+..+.| |++.|..+.|+ |.+||+|+.| .|.+|+.....+....+.+ |.++|..+.|.+|+ +++++.
T Consensus 36 l~ap~m~l~g--h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg---HsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 36 LQAPIMLLPG--HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG---HSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred ccchhhhcCC--CcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc---ccceeEeeeeccCCCEEEEecC
Confidence 3444555567 99999999999 9999999999 9999997566677778887 99999999999987 999999
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEE
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIW 167 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw 167 (357)
|.+++.||+++++.....+ +|..-|+++.... .++.+++.||++++|
T Consensus 111 Dk~v~~wD~~tG~~~rk~k------------------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHK------------------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred CceEEEEecccceeeehhc------------------------------cccceeeecCccccCCeEEEecCCCceEEEE
Confidence 9999999999998765544 8889999988555 789999999999999
Q ss_pred EcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 168 NASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
|+++..+++++ ..+..++++.|..++ .+++|+-|+.|++||++ .......+.+|..+|+.+..+|+|
T Consensus 161 D~R~k~~~~t~--~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r----------~~d~~~~lsGh~DtIt~lsls~~g 228 (338)
T KOG0265|consen 161 DIRKKEAIKTF--ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLR----------KNDGLYTLSGHADTITGLSLSRYG 228 (338)
T ss_pred eecccchhhcc--ccceeEEEEEecccccceeeccccCceeeeccc----------cCcceEEeecccCceeeEEeccCC
Confidence 99999999887 677889999999888 69999999999999998 667888999999999999999999
Q ss_pred CEEEEEecCCeEEEEecccCCcee-eeeeccCCc----cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMV-FAEALWGHT----GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~----~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
.++.+-+.|.++++||++.-..-. .+..+.+|. ...+.++|+|+ .+.+|+.|..+++||.... ..+..+.
T Consensus 229 s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklp 305 (338)
T KOG0265|consen 229 SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLP 305 (338)
T ss_pred CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcC
Confidence 999999999999999998543221 233444443 23466788877 8999999999999999875 7899999
Q ss_pred CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 320 GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 320 ~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
||.+.|++++|+|..+ +|.+++.|.+|.+
T Consensus 306 Gh~gsvn~~~Fhp~e~-------iils~~sdk~i~l 334 (338)
T KOG0265|consen 306 GHYGSVNEVDFHPTEP-------IILSCSSDKTIYL 334 (338)
T ss_pred CcceeEEEeeecCCCc-------EEEEeccCceeEe
Confidence 9999999999999999 9999999999875
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-43 Score=253.31 Aligned_cols=266 Identities=23% Similarity=0.394 Sum_probs=228.2
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
.-+|++++.| +||+|.. .++....+++. ....|+.+...|++ |++++ ...|++||+++.... .+.+
T Consensus 10 ~viLvsA~YDhTIRfWqa-~tG~C~rTiqh---~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~-Pv~t----- 78 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA-LTGICSRTIQH---PDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPN-PVAT----- 78 (311)
T ss_pred ceEEEeccCcceeeeeeh-hcCeEEEEEec---CccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCC-ceeE-----
Confidence 4589999999 9999999 99999999996 67899999999998 55555 578999999987653 2222
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
+.+|...|+++.|.. +.+++|+.||+++|||++...+.+.+ .+..+|+++..+|
T Consensus 79 ----------------------~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhp 134 (311)
T KOG0315|consen 79 ----------------------FEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHP 134 (311)
T ss_pred ----------------------EeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecC
Confidence 238999999999999 89999999999999999997777776 6779999999999
Q ss_pred CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC---ce
Q 038568 194 NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH---RM 269 (357)
Q Consensus 194 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~ 269 (357)
+. .|++|..+|.|++||+. ......++ ......+|.++...|||.+|+.+..-|..++|++-... ++
T Consensus 135 nQteLis~dqsg~irvWDl~------~~~c~~~l---iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l 205 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLG------ENSCTHEL---IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL 205 (311)
T ss_pred CcceEEeecCCCcEEEEEcc------CCcccccc---CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence 87 69999999999999998 22111122 22334789999999999999999999999999986543 44
Q ss_pred eeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEc
Q 038568 270 VFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 270 ~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~ 347 (357)
.++..++.|.+-++.+.++|+ +||+++.|.+++||+.++- ++....+.+|...+.+.+|+.|+. +|+||
T Consensus 206 ~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~-------YlvTa 276 (311)
T KOG0315|consen 206 EPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGE-------YLVTA 276 (311)
T ss_pred eEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCcc-------EEEec
Confidence 556678889999999988887 9999999999999999986 577778999999999999999999 99999
Q ss_pred CCCCeEEecC
Q 038568 348 SLNGEIKVWD 357 (357)
Q Consensus 348 ~~dg~v~~wd 357 (357)
+.|+.+|+||
T Consensus 277 ssd~~~rlW~ 286 (311)
T KOG0315|consen 277 SSDHTARLWD 286 (311)
T ss_pred CCCCceeecc
Confidence 9999999997
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-44 Score=274.25 Aligned_cols=240 Identities=25% Similarity=0.398 Sum_probs=213.4
Q ss_pred cceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccc
Q 038568 62 VDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWL 139 (357)
Q Consensus 62 ~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (357)
-..+.+ |.++|.|++|+|++ |++|+.|.++++||+.+.......+
T Consensus 108 ssS~~G---H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K------------------------------ 154 (480)
T KOG0271|consen 108 SSSIAG---HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK------------------------------ 154 (480)
T ss_pred ccccCC---CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec------------------------------
Confidence 345565 99999999999987 9999999999999999887654443
Q ss_pred cccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC-----C-eEEEEeCCCeEEEEEc
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN-----G-VVYTGSADGRIRVWER 211 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~-~l~~~~~d~~i~i~d~ 211 (357)
+|...|.|++|+| +.||+|+.||.|++||.++++++..-..+|...|++++|.|- . +|++++.||.++|||+
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 9999999999999 999999999999999999998876655899999999999862 2 5999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec---
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--- 288 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--- 288 (357)
. ....+..+.+|..+|+|+.|-.+| +|++|+.|++|++|+...+. +.+.+.+|...|+.++.+
T Consensus 235 ~----------~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~---~~r~lkGHahwvN~lalsTdy 300 (480)
T KOG0271|consen 235 K----------LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGK---LCRELKGHAHWVNHLALSTDY 300 (480)
T ss_pred c----------CceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchh---HHHhhcccchheeeeeccchh
Confidence 7 567888999999999999997654 89999999999999999876 567888999999888765
Q ss_pred ----------C-------------------------ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 289 ----------G-------------------------DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 289 ----------~-------------------------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+ +.|++|++|.++.+|+....+ +++..+.+|...|+.+.|+||
T Consensus 301 ~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd 378 (480)
T KOG0271|consen 301 VLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPD 378 (480)
T ss_pred hhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc--cchhhhhchhhheeeEEECCC
Confidence 1 249999999999999987653 678899999999999999999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++ ++|++|.|..|++||
T Consensus 379 ~r-------~IASaSFDkSVkLW~ 395 (480)
T KOG0271|consen 379 GR-------YIASASFDKSVKLWD 395 (480)
T ss_pred cc-------EEEEeecccceeeee
Confidence 99 999999999999997
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.7e-45 Score=282.01 Aligned_cols=243 Identities=22% Similarity=0.375 Sum_probs=222.5
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe----cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH----NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+.+....+++|++ |.+.|.++.|+ +..+|||+.| ++++|++ ++..++..+.+ |...|..++|+|++
T Consensus 203 ~~~~~~~~~~l~g-----H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~-~~e~~l~~l~g---H~~RVs~VafHPsG 273 (459)
T KOG0272|consen 203 SVPQCNLLQTLRG-----HTSRVGAAVFHPVDSDLNLATASADGTVKLWKL-SQETPLQDLEG---HLARVSRVAFHPSG 273 (459)
T ss_pred ecCCcceeEEEec-----cccceeeEEEccCCCccceeeeccCCceeeecc-CCCcchhhhhc---chhhheeeeecCCC
Confidence 3455677888886 99999999999 3489999999 9999999 88899999998 99999999999998
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
|+|++.|.+-++||++++...... ++|...|.+++|++ .++++|+.
T Consensus 274 ~~L~TasfD~tWRlWD~~tk~ElL~Q------------------------------EGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 274 KFLGTASFDSTWRLWDLETKSELLLQ------------------------------EGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred ceeeecccccchhhcccccchhhHhh------------------------------cccccccceeEecCCCceeeccCc
Confidence 999999999999999988754332 29999999999999 89999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
|..-+|||+++++++..+ .+|..+|.++.|+|+|+ |++|+.|++++|||++ ....+..+.+|.+-|+.
T Consensus 324 D~~~RvWDlRtgr~im~L-~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR----------~r~~ly~ipAH~nlVS~ 392 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFL-AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR----------MRSELYTIPAHSNLVSQ 392 (459)
T ss_pred cchhheeecccCcEEEEe-cccccceeeEeECCCceEEeecCCCCcEEEeeec----------ccccceecccccchhhh
Confidence 999999999999999999 88999999999999996 9999999999999999 45568899999999999
Q ss_pred EEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 240 LALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 240 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
+.|+| .|.+|++++.|+++++|..++.. +.+.+.||.+.|.++..+++ ++++++.|+++++|.
T Consensus 393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 393 VKYSPQEGYFLVTASYDNTVKIWSTRTWS---PLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEecccCCeEEEEcccCcceeeecCCCcc---cchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999 78899999999999999998877 67788999999999988877 899999999999995
No 10
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.5e-44 Score=270.92 Aligned_cols=279 Identities=24% Similarity=0.410 Sum_probs=244.7
Q ss_pred cccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEE
Q 038568 17 IASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIR 95 (357)
Q Consensus 17 ~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~ 95 (357)
++.+..... ....|.|+.|....+++|..| +|+|||. ++.+....+.+ |.+.|.|+.|...-+++|+.|.+|+
T Consensus 187 ~~rinc~Se--~skgVYClQYDD~kiVSGlrDnTikiWD~-n~~~c~~~L~G---HtGSVLCLqyd~rviisGSSDsTvr 260 (499)
T KOG0281|consen 187 LQRINCRSE--NSKGVYCLQYDDEKIVSGLRDNTIKIWDK-NSLECLKILTG---HTGSVLCLQYDERVIVSGSSDSTVR 260 (499)
T ss_pred eeeecCCcc--cCCceEEEEecchhhhcccccCceEEecc-ccHHHHHhhhc---CCCcEEeeeccceEEEecCCCceEE
Confidence 344444333 567899999999999999999 9999999 99999999998 9999999999988899999999999
Q ss_pred EEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchh-
Q 038568 96 VWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKC- 174 (357)
Q Consensus 96 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~- 174 (357)
|||+++++.+..+ ..|...|..+.|+.+++++++.|.++.+||+.....
T Consensus 261 vWDv~tge~l~tl------------------------------ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 261 VWDVNTGEPLNTL------------------------------IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred EEeccCCchhhHH------------------------------hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHH
Confidence 9999999866433 389999999999999999999999999999987542
Q ss_pred --hhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 175 --LESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 175 --~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
...+ .+|...|+.+.|+.. ++++++.|.+|++|++. ....++.+.+|+..|.|+.+ .++++++|
T Consensus 311 t~rrVL-vGHrAaVNvVdfd~k-yIVsASgDRTikvW~~s----------t~efvRtl~gHkRGIAClQY--r~rlvVSG 376 (499)
T KOG0281|consen 311 TLRRVL-VGHRAAVNVVDFDDK-YIVSASGDRTIKVWSTS----------TCEFVRTLNGHKRGIACLQY--RDRLVVSG 376 (499)
T ss_pred HHHHHH-hhhhhheeeeccccc-eEEEecCCceEEEEecc----------ceeeehhhhcccccceehhc--cCeEEEec
Confidence 3334 799999999999755 89999999999999998 67889999999999999987 47899999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCccee------eeeeecCCcCceE
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR------CMAFLEGHEKPVK 326 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~------~~~~~~~h~~~v~ 326 (357)
+.|.+|++||+..+. .+..+.||..-|.|+.|+.+.+++|+.||.|++||+..+...+ ++..+..|.+.|.
T Consensus 377 SSDntIRlwdi~~G~---cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 377 SSDNTIRLWDIECGA---CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred CCCceEEEEeccccH---HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeE
Confidence 999999999999998 5677889999999999999999999999999999998764332 4556677999999
Q ss_pred EEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 327 SLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+.|..- .+++++.|.+|.+||
T Consensus 454 rLQFD~f---------qIvsssHddtILiWd 475 (499)
T KOG0281|consen 454 RLQFDEF---------QIISSSHDDTILIWD 475 (499)
T ss_pred EEeecce---------EEEeccCCCeEEEEE
Confidence 9999654 899999999999997
No 11
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-42 Score=265.40 Aligned_cols=283 Identities=25% Similarity=0.424 Sum_probs=251.0
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
...+.+.+.+ |..+|+.+-|. -..+++++.| +|++||. .+++....+++ |...|.+|+|+..+ |++
T Consensus 97 Rp~l~~~l~g-----~r~~vt~v~~hp~~~~v~~as~d~tikv~D~-~tg~~e~~LrG---Ht~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 97 RPNLVQKLAG-----HRSSVTRVIFHPSEALVVSASEDATIKVFDT-ETGELERSLRG---HTDSVFDISFDASGKYLAT 167 (406)
T ss_pred CCCchhhhhc-----cccceeeeeeccCceEEEEecCCceEEEEEc-cchhhhhhhhc---cccceeEEEEecCccEEEe
Confidence 3344555554 99999999999 5677788889 9999999 99999999999 99999999999876 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
++.|-.+++||..+- .++++.. .+|...|.+++|-| +++++++.|.+|+
T Consensus 168 cSsDl~~~LWd~~~~--~~c~ks~---------------------------~gh~h~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTF--FRCIKSL---------------------------IGHEHGVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred cCCccchhheeHHHH--HHHHHHh---------------------------cCcccceeeEEEEecCCeeeeccccccee
Confidence 999999999999763 2333322 28999999999999 9999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
.|++.++.++.++ .+|...+..+..+.||. +++++.|.++++|-+. ...+...++.|+.+|.+++|-|
T Consensus 219 ~We~~tg~cv~t~-~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~----------t~~~k~~lR~hEh~vEci~wap 287 (406)
T KOG0295|consen 219 AWECDTGYCVKTF-PGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA----------TKQCKAELREHEHPVECIAWAP 287 (406)
T ss_pred EEecccceeEEec-cCchHhEEEEEecCCeeEEEecCCCceEEEEEec----------cchhhhhhhccccceEEEEecc
Confidence 9999999999999 89999999999999994 8999999999999987 4556677889999999999976
Q ss_pred C---------------CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCC
Q 038568 245 D---------------GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 245 ~---------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~ 307 (357)
. +.++.+++.|++|++||+.++. ++.++.+|...|..++|+ |+||+++.+|+++++||++
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~---cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM---CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecccceEEEEeccCCe---EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 2 2589999999999999999997 566888999999999998 5599999999999999999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. ++...+..|..-|++++|+.+.+ +++||+.|.++++|.
T Consensus 365 ~~---~cmk~~~ah~hfvt~lDfh~~~p-------~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 365 NL---QCMKTLEAHEHFVTSLDFHKTAP-------YVVTGSVDQTVKVWE 404 (406)
T ss_pred cc---eeeeccCCCcceeEEEecCCCCc-------eEEeccccceeeeee
Confidence 97 78888889999999999999998 999999999999995
No 12
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=7e-41 Score=267.03 Aligned_cols=324 Identities=21% Similarity=0.343 Sum_probs=258.1
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
-.+-|+++-..+++. |...|.|+.|+ |+++|+++.| +|.+||- .+++.+..+....+|.+.|.+++|+||.
T Consensus 174 ffeGPPFKFk~s~r~-----HskFV~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~~~aHkGsIfalsWsPDs 247 (603)
T KOG0318|consen 174 FFEGPPFKFKSSFRE-----HSKFVNCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELEDSDAHKGSIFALSWSPDS 247 (603)
T ss_pred EeeCCCeeeeecccc-----cccceeeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecCCCCccccEEEEEECCCC
Confidence 345677777778876 99999999999 9999999999 9999999 9999999999666699999999999997
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEec-------------ccccccccccccEEEEE
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRR-------------HKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~v~~~~ 149 (357)
++|++.|.+++|||+.+.+..+.+.......+++....++...+.... ....+..+|...|+++.
T Consensus 248 ~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt 327 (603)
T KOG0318|consen 248 TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT 327 (603)
T ss_pred ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE
Confidence 999999999999999999887777766666677766666544332211 12256689999999999
Q ss_pred Eec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEE---------------------------------------
Q 038568 150 VKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNA--------------------------------------- 188 (357)
Q Consensus 150 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~--------------------------------------- 188 (357)
.++ .+|++|+.||.|.-||..++..-......|...|.+
T Consensus 328 v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 328 VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred EcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 999 999999999999999998766433322233333333
Q ss_pred -----------------------------------------EEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 189 -----------------------------------------VVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 189 -----------------------------------------~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
++++|++ .+++|+.|+.|++|.+. . .....
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~------g--~~l~e 479 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS------G--DELKE 479 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEec------C--Ccccc
Confidence 4445555 35566666666666654 1 11123
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEe
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIW 304 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw 304 (357)
......|.++|++++|+||+.+|++|...+.+.+||..+.+. ......-|...|.|++|+|+ ++|+|+-|-.|.||
T Consensus 480 e~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred eeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 334567999999999999999999999999999999998765 23333449999999999998 99999999999999
Q ss_pred eCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 305 QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 305 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++..+. +.+....+|...|+.+.|-.+. .+++.|.|..|++|+
T Consensus 558 sv~kP~--~~i~iknAH~~gVn~v~wlde~--------tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 558 SVKKPA--KHIIIKNAHLGGVNSVAWLDES--------TVVSSGQDANIKVWN 600 (603)
T ss_pred EccChh--hheEeccccccCceeEEEecCc--------eEEeccCcceeEEec
Confidence 999874 3366778899999999998887 699999999999996
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=246.71 Aligned_cols=273 Identities=18% Similarity=0.332 Sum_probs=235.6
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCCceEEEeccCCc--cccceeccccCCCCceEEEEEecCc-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLNEINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
+..++.|.++++. ..+.|+.+... ++.||+|+...||+||+ ++. .++.+|.+ |...|+++.|..++
T Consensus 26 qa~tG~C~rTiqh-----~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~-~S~np~Pv~t~e~---h~kNVtaVgF~~dgr 96 (311)
T KOG0315|consen 26 QALTGICSRTIQH-----PDSQVNRLEITPDKKDLAAAGNQHVRLYDL-NSNNPNPVATFEG---HTKNVTAVGFQCDGR 96 (311)
T ss_pred ehhcCeEEEEEec-----CccceeeEEEcCCcchhhhccCCeeEEEEc-cCCCCCceeEEec---cCCceEEEEEeecCe
Confidence 6678999999994 56789999998 78888887779999999 553 36889998 99999999999987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
+++|++||+++|||++.....+.+ .|.++|+++..+| ..|++|..+
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~-------------------------------~~~spVn~vvlhpnQteLis~dqs 145 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNY-------------------------------QHNSPVNTVVLHPNQTELISGDQS 145 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhc-------------------------------cCCCCcceEEecCCcceEEeecCC
Confidence 999999999999999985443333 6779999999999 889999999
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
|.|++||+.+..+...+.......|.++.+.|+| +++.+...|..++|++-.. .......++..++.|.+.+..+
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~----~~~s~l~P~~k~~ah~~~il~C 221 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH----QTASELEPVHKFQAHNGHILRC 221 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCC----CccccceEhhheecccceEEEE
Confidence 9999999998877777656667899999999999 5888888999999998741 2234567788899999999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
.+||++++|++++.|.+++||+.++. +.....+.+|...+..++|+.+ ||++|+.|+.+++|+++.+ +.+...
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~---k~v~qy 296 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG---KEVRQY 296 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC---ceeeec
Confidence 99999999999999999999999876 4455678899999999999877 9999999999999999998 667788
Q ss_pred cCCcCceEEEEEe
Q 038568 319 EGHEKPVKSLVAI 331 (357)
Q Consensus 319 ~~h~~~v~~~~~~ 331 (357)
.+|..+..+++..
T Consensus 297 ~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 297 QGHHKAAVCVALN 309 (311)
T ss_pred CCcccccEEEEee
Confidence 8998888777653
No 14
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.8e-43 Score=277.84 Aligned_cols=286 Identities=17% Similarity=0.306 Sum_probs=247.4
Q ss_pred cceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
+.+.+.++.+ |+..|+++.|. +.+|++++.| .|+||++...+.++++|.+ |..+|.+++|++++ ++
T Consensus 203 Pkk~~~~~~g-----H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g---H~k~Vrd~~~s~~g~~fL 274 (503)
T KOG0282|consen 203 PKKLSHNLSG-----HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG---HRKPVRDASFNNCGTSFL 274 (503)
T ss_pred cHhheeeccC-----CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc---chhhhhhhhccccCCeee
Confidence 4455666775 99999999998 8999999999 9999999666999999999 99999999999987 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCe
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRS 163 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~ 163 (357)
+++.|+.|++||+++++....+.. ...++|+.|+| +.+++|+.|+.
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~-------------------------------~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHL-------------------------------DKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred eeecceeeeeeccccceEEEEEec-------------------------------CCCceeeecCCCCCcEEEEecCCCc
Confidence 999999999999999987776643 35688999999 79999999999
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeee-eEeeccccceeEEE
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLV-TTLVKHRSTVNALA 241 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 241 (357)
|+.||+++++.++.+ ..|-+.|..+.|-+++ ++++.+.|+.+++|+.+ ...++ .....+.....++.
T Consensus 324 i~~wDiRs~kvvqeY-d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~----------~~v~ik~i~~~~~hsmP~~~ 392 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEY-DRHLGAILDITFVDEGRRFISSSDDKSVRIWENR----------IPVPIKNIADPEMHTMPCLT 392 (503)
T ss_pred EEEEeccchHHHHHH-HhhhhheeeeEEccCCceEeeeccCccEEEEEcC----------CCccchhhcchhhccCccee
Confidence 999999999999999 8999999999999999 69999999999999987 22222 22223344567899
Q ss_pred EecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc--eEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 242 LNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA--LLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
.+|+++++++-+.|+.|.+|.+...-+....+.+.+|..+ -..+.|+|+ +|++|+.||.+.+||.++- +.+..
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---kl~~~ 469 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT---KLVSK 469 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh---hhhhc
Confidence 9999999999999999999998766655566677787643 455667776 9999999999999999986 77888
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++|.+++..+.|+|... ..+||+|.||.|++||
T Consensus 470 lkah~~~ci~v~wHP~e~------Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEP------SKVATCGWDGLIKIWD 503 (503)
T ss_pred cccCCcceEEEEecCCCc------ceeEecccCceeEecC
Confidence 999999999999999876 3899999999999997
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-41 Score=268.12 Aligned_cols=275 Identities=24% Similarity=0.322 Sum_probs=237.8
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCC---ccccceecc-------ccCCCCceEEEEEecCc--eEEeecC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISD---YSHVDTFSN-------DLSSSGSVKSITFHITK--IFTAHQD 91 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~---~~~~~~~~~-------~~~~~~~v~~l~~~~~~--l~~~~~d 91 (357)
|..+|.+.+|+ ..++++|+.| ..++|++.+. ......|+. ..+....|++++|+.++ |++|+.|
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~ 256 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSED 256 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecC
Confidence 99999999999 4589999999 9999999321 111111110 11245789999999887 9999999
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEc
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 169 (357)
|.+++|+..... ... +..|.++|.++.|+. .+|++++.|+++.+||.
T Consensus 257 G~~riw~~~G~l-~~t------------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 257 GEARIWNKDGNL-IST------------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA 305 (524)
T ss_pred cEEEEEecCchh-hhh------------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence 999999987542 222 238999999999999 89999999999999999
Q ss_pred CcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE
Q 038568 170 SNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (357)
.++...+.+ .-|..+-..+.|-.+..|++++.|+.|+++.+. ...+..++.+|.++|.++.|+|.+.+|
T Consensus 306 ~~g~~~q~f-~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~----------~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 306 HTGTVKQQF-EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG----------EDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred cCceEEEee-eeccCCccceEEecCceEeecCCCceEEEEEec----------CCCcceeeecccCceEEEEECCCCceE
Confidence 999988888 677777788999988899999999999999987 567888899999999999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-----------eEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-----------LLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
++++.|++++||++.... ....+.+|...|..+.|+|. .+++++.|++|++||+..+ .++..+
T Consensus 375 aS~SdD~TlkiWs~~~~~---~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f 448 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSN---SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTL 448 (524)
T ss_pred EEecCCCeeEeeecCCCc---chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEee
Confidence 999999999999987665 56678889988988888753 8999999999999999998 888999
Q ss_pred cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 319 EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 319 ~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|..+|.+++|+|+++ ++++|+.||.|.+|+
T Consensus 449 ~kH~~pVysvafS~~g~-------ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 449 MKHQEPVYSVAFSPNGR-------YLASGSLDGCVHIWS 480 (524)
T ss_pred ccCCCceEEEEecCCCc-------EEEecCCCCeeEecc
Confidence 99999999999999999 999999999999996
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=269.01 Aligned_cols=273 Identities=19% Similarity=0.310 Sum_probs=239.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-+.+|..+.|. |+.|++|+.. ...+|+. ........++. |..+|.++.|++++ +++|..+|.|++|+.+-.
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg-~~fnFEtilQa---HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNG-TSFNFETILQA---HDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecC-ceeeHHHHhhh---hcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 45679999999 8999999999 9999998 66665666676 99999999999987 999999999999998643
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
.. ..+. ..|...|++++|+| ..+++++.||+|+|||....+....+ .
T Consensus 171 nV-k~~~-----------------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~ 219 (464)
T KOG0284|consen 171 NV-KIIQ-----------------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-R 219 (464)
T ss_pred hh-HHhh-----------------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-c
Confidence 22 1111 15558999999999 89999999999999999998888888 8
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
+|.-.|.++.|+|.. .+++++.|..|++||.+ ...++.++.+|+..|..+.|+|++++|++++.|..++
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr----------Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR----------SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCC----------CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 999999999999976 79999999999999998 6778899999999999999999999999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
++|+++.+ .+..+.+|+..++++.|+|- +|.+|+.||.|..|.+...+ .....-.+|...|++++|+|-|.
T Consensus 290 v~DiR~mk---El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGh- 363 (464)
T KOG0284|consen 290 VFDIRTMK---ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGH- 363 (464)
T ss_pred EEehhHhH---HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccce-
Confidence 99999665 45677889999999999874 99999999999999998542 22334468999999999999998
Q ss_pred CCCCeEEEEEcCCCCeEEecC
Q 038568 337 ASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 337 ~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++|+.|.++++|.
T Consensus 364 ------il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 364 ------ILATGSNDRTVRFWT 378 (464)
T ss_pred ------eEeecCCCcceeeec
Confidence 999999999999994
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=244.05 Aligned_cols=285 Identities=22% Similarity=0.340 Sum_probs=234.5
Q ss_pred ecccccCCCCCCCccceeEEEEe-c--ceEEEeeCC-ceEEEeccCC---ccccceeccccCCCCceEEEEEecCc--eE
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH-N--SLLYAASLN-EINVFDLISD---YSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s-~--~~l~t~~~d-~i~iw~~~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.++.++ | |.+.|..++|+ + ..||+++.| .|+||+. .. ......+.. +|+..|.+++|+|.+ |+
T Consensus 6 ~~~~~~---g--h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~-~~~~s~~ck~vld~--~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 6 LEQKLS---G--HKDRVWSVAWHPGKGVILASCGTDKAVRIWST-SSGDSWTCKTVLDD--GHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred eEEeec---C--CCCcEEEEEeccCCceEEEeecCCceEEEEec-CCCCcEEEEEeccc--cchheeeeeeecCCCcEEE
Confidence 344555 4 99999999999 4 499999999 9999999 53 334444443 499999999999987 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+|+.|.++.||.-..++ ..++..+ ++|...|.+++|++ ++||++++|+.|
T Consensus 78 ~aSFD~t~~Iw~k~~~e-fecv~~l---------------------------EGHEnEVK~Vaws~sG~~LATCSRDKSV 129 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGE-FECVATL---------------------------EGHENEVKCVAWSASGNYLATCSRDKSV 129 (312)
T ss_pred EeeccceEEEeecCCCc-eeEEeee---------------------------eccccceeEEEEcCCCCEEEEeeCCCeE
Confidence 99999999999876543 3444444 39999999999999 999999999999
Q ss_pred EEEEcCcc---hhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 165 KIWNASNY---KCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 165 ~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
-||.+..+ +++..+ ..|...|..+.|+|.. .|++++.|.+|++|+-. . .....+...+.+|...|.++
T Consensus 130 WiWe~deddEfec~aVL-~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~------~-dddW~c~~tl~g~~~TVW~~ 201 (312)
T KOG0645|consen 130 WIWEIDEDDEFECIAVL-QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDE------D-DDDWECVQTLDGHENTVWSL 201 (312)
T ss_pred EEEEecCCCcEEEEeee-ccccccccEEEEcCCcceeEEeccCCeEEEEeec------C-CCCeeEEEEecCccceEEEE
Confidence 99998743 466666 8999999999999966 79999999999999865 2 34678899999999999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCC---cceeee-e
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE---NCYRCM-A 316 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~---~~~~~~-~ 316 (357)
+|+|.|..|++++.|++++||...+.- ...|..++..++|....|++++.|+.|++|.-... ..+..+ .
T Consensus 202 ~F~~~G~rl~s~sdD~tv~Iw~~~~~~-------~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~ 274 (312)
T KOG0645|consen 202 AFDNIGSRLVSCSDDGTVSIWRLYTDL-------SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAK 274 (312)
T ss_pred EecCCCceEEEecCCcceEeeeeccCc-------chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHh
Confidence 999999999999999999999876331 12377888999999669999999999999987642 112222 2
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.-..|...|+++.|.|..+ .+|++||+||.|++|.
T Consensus 275 ~~~aHe~dVNsV~w~p~~~------~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 275 KEGAHEVDVNSVQWNPKVS------NRLASGGDDGIVNFWE 309 (312)
T ss_pred hhcccccccceEEEcCCCC------CceeecCCCceEEEEE
Confidence 4467999999999999532 2899999999999994
No 18
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-40 Score=238.89 Aligned_cols=274 Identities=15% Similarity=0.290 Sum_probs=230.0
Q ss_pred ecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ 90 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~ 90 (357)
..+.++. |.++|.++.|+ |+|.++++.| +|++|++ ..+..++++.+ |...|..++.+.|. |++|+.
T Consensus 9 r~~~l~~-----~qgaV~avryN~dGnY~ltcGsdrtvrLWNp-~rg~liktYsg---hG~EVlD~~~s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 9 RLSILDC-----AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNP-LRGALIKTYSG---HGHEVLDAALSSDNSKFASCGG 79 (307)
T ss_pred hceeecc-----cccceEEEEEccCCCEEEEcCCCceEEeecc-cccceeeeecC---CCceeeeccccccccccccCCC
Confidence 4455665 99999999999 9999999999 9999999 99999999999 99999999988765 999999
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEE
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 168 (357)
|..+.+||+++++..+.+. +|.+.|+.+.|+. ..+++|+.|.++++||
T Consensus 80 Dk~v~vwDV~TGkv~Rr~r------------------------------gH~aqVNtV~fNeesSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFR------------------------------GHLAQVNTVRFNEESSVVASGSFDSSVRLWD 129 (307)
T ss_pred CceEEEEEcccCeeeeecc------------------------------cccceeeEEEecCcceEEEeccccceeEEEE
Confidence 9999999999998776654 9999999999999 8999999999999999
Q ss_pred cCc--chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 169 ASN--YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 169 ~~~--~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
.++ .++++.+ ......|.++..... .+++|+.||+++.||++ .+...... ...+|+++.|++++
T Consensus 130 CRS~s~ePiQil-dea~D~V~Si~v~~h-eIvaGS~DGtvRtydiR----------~G~l~sDy--~g~pit~vs~s~d~ 195 (307)
T KOG0316|consen 130 CRSRSFEPIQIL-DEAKDGVSSIDVAEH-EIVAGSVDGTVRTYDIR----------KGTLSSDY--FGHPITSVSFSKDG 195 (307)
T ss_pred cccCCCCccchh-hhhcCceeEEEeccc-EEEeeccCCcEEEEEee----------cceeehhh--cCCcceeEEecCCC
Confidence 875 5678888 777888999987543 69999999999999999 34443333 34689999999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE--ee--cCceEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL--IN--VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
+..++++.|+++++.|-.+++ .+....+|.+.-..+ .+ +...+++|++||.|++||+... ..+..+..+.
T Consensus 196 nc~La~~l~stlrLlDk~tGk---lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~ 269 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGK---LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVVS 269 (307)
T ss_pred CEEEEeeccceeeecccchhH---HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccCC
Confidence 999999999999999999998 455666776654222 22 3339999999999999999987 6677778788
Q ss_pred Cc-eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 323 KP-VKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 323 ~~-v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.. |++++++|... -|+++. ++.+.+|
T Consensus 270 ~v~v~dl~~hp~~~-------~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 270 TVIVTDLSCHPTMD-------DFITAT-GHGDLFW 296 (307)
T ss_pred ceeEEeeecccCcc-------ceeEec-CCceece
Confidence 87 89999999987 566665 3344444
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-41 Score=284.08 Aligned_cols=275 Identities=20% Similarity=0.385 Sum_probs=225.9
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEE
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFT 87 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~ 87 (357)
..+.-|..++.. -...++|..|+ +.+||.|-.| .|++|.+ .. +.++.++. ...+. .+=+
T Consensus 365 ~lpSic~YT~~n-----t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl-~p-~kl~~lk~----~~~l~-------~~d~ 426 (707)
T KOG0263|consen 365 SLPSICMYTFHN-----TYQGVTCAEFSDDSSMLACGFVDSSVRVWSL-TP-KKLKKLKD----ASDLS-------NIDT 426 (707)
T ss_pred CCCcEEEEEEEE-----cCCcceeEeecCCcchhhccccccEEEEEec-ch-hhhccccc----hhhhc-------cccc
Confidence 344555555553 44567888887 6677777777 8888887 43 24444442 11110 1223
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
.+.|-.+.+.|.++...... +.+|.++|..+.|+| ++|++++.|++++
T Consensus 427 ~sad~~~~~~D~~~~~~~~~------------------------------L~GH~GPVyg~sFsPd~rfLlScSED~svR 476 (707)
T KOG0263|consen 427 ESADVDVDMLDDDSSGTSRT------------------------------LYGHSGPVYGCSFSPDRRFLLSCSEDSSVR 476 (707)
T ss_pred cccchhhhhccccCCceeEE------------------------------eecCCCceeeeeecccccceeeccCCccee
Confidence 33333355555544433222 239999999999999 9999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+|.+.+..++-.+ .+|..+|..+.|+|.| +|++++.|++.++|... ...+.+.+.+|.+.|.|+.|+|
T Consensus 477 LWsl~t~s~~V~y-~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d----------~~~PlRifaghlsDV~cv~FHP 545 (707)
T KOG0263|consen 477 LWSLDTWSCLVIY-KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD----------HNKPLRIFAGHLSDVDCVSFHP 545 (707)
T ss_pred eeecccceeEEEe-cCCCcceeeEEecCCceEEEecCCCceeeeeecc----------cCCchhhhcccccccceEEECC
Confidence 9999999999988 7999999999999999 59999999999999987 5678889999999999999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
+..|+++|+.|.++|+||+.++. ..+.+.||.++|.+++|+|. +|++|+.||.|.+||+.++ ..+..+.+|.
T Consensus 546 Ns~Y~aTGSsD~tVRlWDv~~G~---~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~---~~v~~l~~Ht 619 (707)
T KOG0263|consen 546 NSNYVATGSSDRTVRLWDVSTGN---SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANG---SLVKQLKGHT 619 (707)
T ss_pred cccccccCCCCceEEEEEcCCCc---EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCC---cchhhhhccc
Confidence 99999999999999999999998 45677899999999999887 9999999999999999998 7788899999
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|.++.|+.++. .||+||.|.+|++||
T Consensus 620 ~ti~SlsFS~dg~-------vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 620 GTIYSLSFSRDGN-------VLASGGADNSVRLWD 647 (707)
T ss_pred CceeEEEEecCCC-------EEEecCCCCeEEEEE
Confidence 9999999999998 999999999999998
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-41 Score=260.08 Aligned_cols=290 Identities=20% Similarity=0.321 Sum_probs=237.9
Q ss_pred cccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC--ccccceeccccCCCCceEEEEEe
Q 038568 7 VSSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~ 81 (357)
......+.+..+.+.. |.+.|+-+.|| |+|||+|+.| +..+|++... .+..+++.+ |..+|..+.|+
T Consensus 207 c~~~qip~qt~qil~~-----htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg---h~~~V~yi~wS 278 (519)
T KOG0293|consen 207 CGRLQIPSQTWQILQD-----HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG---HSQPVSYIMWS 278 (519)
T ss_pred cCcccCCchhhhhHhh-----CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec---ccCceEEEEEC
Confidence 3444556777777876 99999999999 9999999999 9999998322 234677777 99999999999
Q ss_pred cCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE
Q 038568 82 ITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS 157 (357)
Q Consensus 82 ~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~ 157 (357)
||. |++++.|..+.+||+.++.....+.. ++...+.+++|.| ..+++
T Consensus 279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~-----------------------------~~~~S~~sc~W~pDg~~~V~ 329 (519)
T KOG0293|consen 279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPS-----------------------------GLGFSVSSCAWCPDGFRFVT 329 (519)
T ss_pred CCCCeEEecCchHheeeccCCcchhhhhccc-----------------------------CcCCCcceeEEccCCceeEe
Confidence 986 99999999999999999976555432 5567899999999 78999
Q ss_pred EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 158 VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
|+.|+.+..||+. |..+..+.......|.+++..+|| ++++.+.|..|++|+... ... ..+.....+
T Consensus 330 Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~----------~~d-r~lise~~~ 397 (519)
T KOG0293|consen 330 GSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREA----------RVD-RGLISEEQP 397 (519)
T ss_pred cCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhh----------hhh-hccccccCc
Confidence 9999999999985 555666644445679999999999 588888999999999861 111 113345678
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc--eEEEeecC---ceEEEecCCCeEEEeeCCCCcc
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA--LLCLINVG---DLLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~---~~l~~~~~dg~i~vw~~~~~~~ 311 (357)
|+++..+.+++++++.-.+..|++||++... .+....||+.. +..-+|.+ .++++|++|+.|+||+..++
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~e~~---lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-- 472 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLEENK---LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-- 472 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecchhh---HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--
Confidence 9999999999999999999999999999655 44566677643 33333433 39999999999999999998
Q ss_pred eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 312 YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 312 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++.++.||...|++++|+|..+ .++|+||+||+||||-
T Consensus 473 -kll~~LsGHs~~vNcVswNP~~p------~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 473 -KLLAVLSGHSKTVNCVSWNPADP------EMFASASDDGTIRIWG 511 (519)
T ss_pred -ceeEeecCCcceeeEEecCCCCH------HHhhccCCCCeEEEec
Confidence 88999999999999999999887 5899999999999993
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-40 Score=272.14 Aligned_cols=288 Identities=20% Similarity=0.333 Sum_probs=245.5
Q ss_pred ccccceecccccCCCCCCCccceeEEEEec---ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEE-EecC-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVHN---SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSIT-FHIT- 83 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~---~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~- 83 (357)
+....+..+.+-| .++.|.+++|-| ++||+++.- .+|+|+. .+...- .+.+ |...|.+++ |+.+
T Consensus 309 d~~~l~i~k~ivG-----~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~-~~~~c~-ii~G---H~e~vlSL~~~~~g~ 378 (775)
T KOG0319|consen 309 DEDELTIVKQIVG-----YNDEILDMKFLGPEESHLAVATNSPELRLYTL-PTSYCQ-IIPG---HTEAVLSLDVWSSGD 378 (775)
T ss_pred EccccEEehhhcC-----CchhheeeeecCCccceEEEEeCCCceEEEec-CCCceE-EEeC---chhheeeeeecccCc
Confidence 3445566666665 889999999984 899999999 9999998 664443 7777 999999999 4444
Q ss_pred ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEec
Q 038568 84 KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSW 160 (357)
Q Consensus 84 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~ 160 (357)
.|+||+.|.++++|.++.+....... ....+|.+.|.+++++. .+|+++|.
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~--------------------------a~~~gH~~svgava~~~~~asffvsvS~ 432 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCV--------------------------AQANGHTNSVGAVAGSKLGASFFVSVSQ 432 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhh--------------------------hhhcccccccceeeecccCccEEEEecC
Confidence 39999999999999995443211111 11239999999999977 89999999
Q ss_pred CCeEEEEEcCcch---------hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 161 DRSFKIWNASNYK---------CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 161 dg~i~iwd~~~~~---------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
|+++++|++...+ +..+. ..|...|++++++|+. .+++|+.|.+.++|++. .......+
T Consensus 433 D~tlK~W~l~~s~~~~~~~~~~~~~t~-~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le----------~~~l~~vL 501 (775)
T KOG0319|consen 433 DCTLKLWDLPKSKETAFPIVLTCRYTE-RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE----------QLRLLGVL 501 (775)
T ss_pred CceEEEecCCCcccccccceehhhHHH-HhhcccccceEecCCCceEEecccccceeeeccc----------CceEEEEe
Confidence 9999999987622 11122 6799999999999988 59999999999999997 67788999
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
.+|...|.++.|+|..+.+++++.|++|+||.+.+.. +.+++.||...|....|-.+ .|++++.||-|++|++.+
T Consensus 502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred eCCccceEEEEeccccceeEeccCCceEEEEEeccce---eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 9999999999999999999999999999999999877 67889999999998888644 999999999999999999
Q ss_pred CcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 309 ENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 309 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ .++..+.+|.+.|++++.+|... +++||+.||.|.+|.
T Consensus 579 ~---eC~~tlD~H~DrvWaL~~~~~~~-------~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 579 N---ECEMTLDAHNDRVWALSVSPLLD-------MFVTGGGDGRIIFWK 617 (775)
T ss_pred h---hhhhhhhhccceeEEEeecCccc-------eeEecCCCeEEEEee
Confidence 8 88899999999999999999998 999999999999994
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-39 Score=255.80 Aligned_cols=270 Identities=19% Similarity=0.304 Sum_probs=238.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-+..|++++|+ |.+||+|+.| .++||+. ++..+.++.. |+++|.++.|+..+ |++++.|+++.+||..++
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~--~G~l~~tl~~---HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNK--DGNLISTLGQ---HKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEec--Cchhhhhhhc---cCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 45789999999 9999999999 9999997 6688888987 99999999999877 999999999999999888
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
...+.+. .|+.+-.++.|.. ..+++++.|+.|+++.+....++.++ .+
T Consensus 309 ~~~q~f~------------------------------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~-~G 357 (524)
T KOG0273|consen 309 TVKQQFE------------------------------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTF-IG 357 (524)
T ss_pred eEEEeee------------------------------eccCCccceEEecCceEeecCCCceEEEEEecCCCcceee-ec
Confidence 7655443 6677778899988 99999999999999999999999999 77
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC---------CEEEE
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG---------SLLFS 251 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~ 251 (357)
|.++|.++.|+|.+ .|++++.|++++||... .......+.+|...|+.+.|+|.| ..+++
T Consensus 358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~----------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMG----------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred ccCceEEEEECCCCceEEEecCCCeeEeeecC----------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence 99999999999999 59999999999999976 456677888999999999999854 47999
Q ss_pred EecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 252 GGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 252 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
++.|++|++||+..+. ++..+..|..+|.+++|+|+ ++|+|+.||.|.+|+.+++ +.++...+ .+.|..++
T Consensus 428 as~dstV~lwdv~~gv---~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~---~l~~s~~~-~~~Ifel~ 500 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGV---PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG---KLVKSYQG-TGGIFELC 500 (524)
T ss_pred eecCCeEEEEEccCCc---eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccch---heeEeecC-CCeEEEEE
Confidence 9999999999999887 55667789999999999976 9999999999999999997 55666654 55699999
Q ss_pred EeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 330 AISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+.++. .|..+-.||.+++-|
T Consensus 501 Wn~~G~-------kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 501 WNAAGD-------KLGACASDGSVCVLD 521 (524)
T ss_pred EcCCCC-------EEEEEecCCCceEEE
Confidence 999998 888888899988754
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=270.10 Aligned_cols=323 Identities=23% Similarity=0.359 Sum_probs=250.7
Q ss_pred cccceecccccCCCCCCCccceeEEEEe----cceEEEeeCC-ceEEEeccCC-ccccceeccccCCCCceEEEEEecCc
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH----NSLLYAASLN-EINVFDLISD-YSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
.....|.+.|++ |.+.|.++.|. ..+|++|+.| .+++||+ .+ ..++.++.. |...|++++|.+|.
T Consensus 134 i~~~~~th~fkG-----~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl-~~~~tcl~~~~~---H~S~vtsL~~~~d~ 204 (775)
T KOG0319|consen 134 IKNGYCTHSFKG-----HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL-NDKRTCLHTMIL---HKSAVTSLAFSEDS 204 (775)
T ss_pred eeCCEEEEEecC-----CCceEEEEEeCCccchhheeecCCCceEEEEEc-ccCchHHHHHHh---hhhheeeeeeccCC
Confidence 346778889997 99999999999 4578899999 9999999 54 445888888 99999999999987
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCcccccee---------------------eeec------------------
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLI---------------------RSVL------------------ 123 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~---------------------~~~~------------------ 123 (357)
+++++.|..+.+||+.+-+....+........... ..+.
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~ 284 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI 284 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhh
Confidence 99999999999999855332221111111000000 0000
Q ss_pred --------CCCeEEEec------------------------------------------------------ccccccccc
Q 038568 124 --------PNNYVTVRR------------------------------------------------------HKKRLWLEH 141 (357)
Q Consensus 124 --------~~~~~~~~~------------------------------------------------------~~~~~~~~~ 141 (357)
....+.+.. ....++.+|
T Consensus 285 ~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH 364 (775)
T KOG0319|consen 285 DHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGH 364 (775)
T ss_pred hcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCc
Confidence 000000000 000455899
Q ss_pred cccEEEEE-Eec-CeEEEEecCCeEEEEEcCcc----hhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccc
Q 038568 142 WDAVSDLV-VKQ-GLMYSVSWDRSFKIWNASNY----KCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSV 213 (357)
Q Consensus 142 ~~~v~~~~-~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~ 213 (357)
...|.++. |.. .+|++|+.|.++++|.++++ .++... .+|...|.+++++..+ .|++++.|+++++|++..
T Consensus 365 ~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~-~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 365 TEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA-NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred hhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh-cccccccceeeecccCccEEEEecCCceEEEecCCC
Confidence 99999999 444 59999999999999987443 244555 7899999999997766 599999999999999984
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--e
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--L 291 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 291 (357)
.+.... ............|...|++++++|+.+++++|+.|++.+||++.... ....+.||+..+.++.|++. .
T Consensus 444 s~~~~~-~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~---l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 444 SKETAF-PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR---LLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred cccccc-cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce---EEEEeeCCccceEEEEeccccce
Confidence 111100 11111222456799999999999999999999999999999999544 67889999999999999987 9
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|++.|++|+||.+.+. .++.++.||...|..+.|-.++. .|+|++.||.|++||
T Consensus 520 laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~~~-------qliS~~adGliKlWn 575 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRNGK-------QLISAGADGLIKLWN 575 (775)
T ss_pred eEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeCCc-------EEEeccCCCcEEEEe
Confidence 999999999999999986 89999999999999999999998 999999999999997
No 24
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.7e-38 Score=259.28 Aligned_cols=272 Identities=31% Similarity=0.539 Sum_probs=233.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.++|++++|+ +++|++++.| .|++|+. .+.+....+.. |...+..+.|+|++ +++++.||.|++|++.++
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~-~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~ 83 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDL-ETGELLRTLKG---HTGPVRDVAASADGTYLASGSSDKTIRLWDLETG 83 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEe-eCCCcEEEEec---CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence 99999999999 7999999999 9999999 77777777777 99999999999986 999999999999999876
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+....+. .|...+.++.|.+ .++++++.+|.|.+||+++++....+ .
T Consensus 84 ~~~~~~~------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 132 (289)
T cd00200 84 ECVRTLT------------------------------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL-R 132 (289)
T ss_pred cceEEEe------------------------------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe-c
Confidence 4433332 6777899999999 67777777999999999988888887 6
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
.|...+.++.++|++. +++++.++.|++||++ ..+....+..|...+.++.|+|+++.+++++.|+.|+
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR----------TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc----------ccccceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 7888999999999875 5556669999999997 3445566678888999999999999999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
+||++.++ ....+..|...+.++.++++ ++++++.||.|++|++.++ +....+..|...|.+++|+|+++
T Consensus 203 i~d~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~-- 274 (289)
T cd00200 203 LWDLSTGK---CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGK-- 274 (289)
T ss_pred EEECCCCc---eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCC--
Confidence 99998765 34445568889999999885 7777777999999999976 55666778999999999999988
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
+|++++.||.|++||
T Consensus 275 -----~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 -----RLASGSADGTIRIWD 289 (289)
T ss_pred -----EEEEecCCCeEEecC
Confidence 999999999999997
No 25
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.2e-39 Score=250.06 Aligned_cols=286 Identities=24% Similarity=0.390 Sum_probs=242.6
Q ss_pred ccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec-C-c---e
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI-T-K---I 85 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~---l 85 (357)
++.+....+. |.+.|.++...++.|++|+.| .+++||. .|+....+.+ |.++|.+++|.- + . |
T Consensus 94 ~aP~pl~~~~------hdDWVSsv~~~~~~IltgsYDg~~riWd~--~Gk~~~~~~G---ht~~ik~v~~v~~n~~~~~f 162 (423)
T KOG0313|consen 94 TAPKPLQCFL------HDDWVSSVKGASKWILTGSYDGTSRIWDL--KGKSIKTIVG---HTGPIKSVAWVIKNSSSCLF 162 (423)
T ss_pred CCCCcccccc------chhhhhhhcccCceEEEeecCCeeEEEec--CCceEEEEec---CCcceeeeEEEecCCccceE
Confidence 3445566666 999999999999999999999 9999997 6688889998 999999998872 2 2 9
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
++++.|.++++|.++.++....... .-.+|...|-++...+ ..+++|+.|..
T Consensus 163 vsas~Dqtl~Lw~~~~~~~~~~~~~--------------------------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~ 216 (423)
T KOG0313|consen 163 VSASMDQTLRLWKWNVGENKVKALK--------------------------VCRGHKRSVDSVSVDSSGTRFCSGSWDTM 216 (423)
T ss_pred EEecCCceEEEEEecCchhhhhHHh--------------------------HhcccccceeEEEecCCCCeEEeecccce
Confidence 9999999999999987764322211 1129999999999888 89999999999
Q ss_pred EEEEEcCc-------------------------chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc
Q 038568 164 FKIWNASN-------------------------YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 164 i~iwd~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
|.+|+..+ ..++..+ .+|..+|.++.|++.+.+++++.|.+|+.||+.
T Consensus 217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDle------ 289 (423)
T KOG0313|consen 217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLE------ 289 (423)
T ss_pred eeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEEEcCCCceEeecccceEEEEEee------
Confidence 99999321 1123334 789999999999998889999999999999998
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEe
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASG 295 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~ 295 (357)
.......+. .....++++++|..++|++|+.|..|++||.+++.-......+.+|.+.|.++.|+|. +|++|
T Consensus 290 ----tg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~ 364 (423)
T KOG0313|consen 290 ----TGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG 364 (423)
T ss_pred ----cccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence 333344443 3567899999999999999999999999999998877788899999999999999987 89999
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.|+++++||+++.+ .+++.+.+|.+.|.++.|.... .+++||.|.+|+++
T Consensus 365 S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~~--------~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEGG--------LIVSGGADNKLRIF 415 (423)
T ss_pred ecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCCc--------eEEeccCcceEEEe
Confidence 999999999999873 5799999999999999998876 79999999999986
No 26
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.2e-41 Score=254.78 Aligned_cols=250 Identities=22% Similarity=0.365 Sum_probs=223.1
Q ss_pred ccccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEe
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTA 88 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~ 88 (357)
+....+|++.|.+ |++.|.|+.|..+.|++|+.| +|+|||+ ++++++.++-+ |.+.|..+.|+.+.++++
T Consensus 223 D~n~~~c~~~L~G-----HtGSVLCLqyd~rviisGSSDsTvrvWDv-~tge~l~tlih---HceaVLhlrf~ng~mvtc 293 (499)
T KOG0281|consen 223 DKNSLECLKILTG-----HTGSVLCLQYDERVIVSGSSDSTVRVWDV-NTGEPLNTLIH---HCEAVLHLRFSNGYMVTC 293 (499)
T ss_pred ccccHHHHHhhhc-----CCCcEEeeeccceEEEecCCCceEEEEec-cCCchhhHHhh---hcceeEEEEEeCCEEEEe
Confidence 4456778888886 999999999998899999999 9999999 99999999998 999999999999999999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN 168 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd 168 (357)
+.|.++.+||+.......... ++.+|...|+.+.|+.+++++++.|.+|++|+
T Consensus 294 SkDrsiaVWdm~sps~it~rr---------------------------VLvGHrAaVNvVdfd~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 294 SKDRSIAVWDMASPTDITLRR---------------------------VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWS 346 (499)
T ss_pred cCCceeEEEeccCchHHHHHH---------------------------HHhhhhhheeeeccccceEEEecCCceEEEEe
Confidence 999999999998876544433 33499999999999999999999999999999
Q ss_pred cCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
+.+++.+.++ .+|...|.|+.+. +..+++|+.|.+|++||+. .+.+++.+.+|..-|.++.|+ .+.
T Consensus 347 ~st~efvRtl-~gHkRGIAClQYr-~rlvVSGSSDntIRlwdi~----------~G~cLRvLeGHEeLvRciRFd--~kr 412 (499)
T KOG0281|consen 347 TSTCEFVRTL-NGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIE----------CGACLRVLEGHEELVRCIRFD--NKR 412 (499)
T ss_pred ccceeeehhh-hcccccceehhcc-CeEEEecCCCceEEEEecc----------ccHHHHHHhchHHhhhheeec--Cce
Confidence 9999999999 9999999998873 2368999999999999998 677889999999999999996 568
Q ss_pred EEEEecCCeEEEEecccCCcee------eeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCC
Q 038568 249 LFSGGCDRWIVVWERERDHRMV------FAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~ 309 (357)
+++|+.||+|+|||+..+.... .+..+..|.+.|..+.|+.-.+++++.|.+|-+||+.++
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 9999999999999998765431 234556799999999999999999999999999999876
No 27
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=271.67 Aligned_cols=274 Identities=24% Similarity=0.470 Sum_probs=232.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|...|.|+.|+ |+++++++.+ .+++|+. ...+ ....+.+ |...|.+++|+|++ +++++.|++|++||+.
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~-~~~~~~~~~~l~~---h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKL-EGIKSNLLRELSG---HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeec-ccccchhhccccc---cccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 48899999999 9999999999 9999999 7777 6777766 99999999999998 9999999999999994
Q ss_pred Cc-cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 AS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
.. ...+.+ .+|...|++++|+| +++++|+.|++|++||+++++++..
T Consensus 234 ~~~~~~~~l------------------------------~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~ 283 (456)
T KOG0266|consen 234 DDGRNLKTL------------------------------KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK 283 (456)
T ss_pred CCCeEEEEe------------------------------cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe
Confidence 33 333322 39999999999999 7999999999999999999999999
Q ss_pred ccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc--ceeEEEEecCCCEEEEEec
Q 038568 178 VNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS--TVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~ 254 (357)
+ .+|...|++++|++++ .|++++.|+.|++||+.. .... +...+..+.. +++++.|+|++.++++++.
T Consensus 284 l-~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~------~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~ 354 (456)
T KOG0266|consen 284 L-KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET------GSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASL 354 (456)
T ss_pred e-eccCCceEEEEECCCCCEEEEcCCCccEEEEECCC------Ccee--eeecccCCCCCCceeEEEECCCCcEEEEecC
Confidence 9 9999999999999999 588999999999999982 1111 3445555544 4999999999999999999
Q ss_pred CCeEEEEecccCCceeeeeeccCCccceEEE---ee--cCceEEEecCCCeEEEeeCCCCcceeeeeeecCC-cCceEEE
Q 038568 255 DRWIVVWERERDHRMVFAEALWGHTGALLCL---IN--VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGH-EKPVKSL 328 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~---~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h-~~~v~~~ 328 (357)
|+.+++||+..+.. .....+|...+.|+ .. .+.++++|+.|+.|++|++.++ ..+..+.+| ...+..+
T Consensus 355 d~~~~~w~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKS---VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDL 428 (456)
T ss_pred CCeEEEEEccCCcc---eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceecc
Confidence 99999999998874 34455566644333 22 2349999999999999999986 667788899 8999999
Q ss_pred EEeeCCCCCCCCeEEEEEcC--CCCeEEecC
Q 038568 329 VAISSSSSASNGIVSIGSGS--LNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~--~dg~v~~wd 357 (357)
.++|..+ ++++++ .|+.+++|.
T Consensus 429 ~~~~~~~-------~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 429 SSHPTEN-------LIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCcC-------eeeecCcCCCceEEEec
Confidence 9999998 999998 799999994
No 28
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=8.1e-39 Score=244.28 Aligned_cols=287 Identities=15% Similarity=0.208 Sum_probs=235.8
Q ss_pred cccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC
Q 038568 17 IASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD 91 (357)
Q Consensus 17 ~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d 91 (357)
+.+|.. |++.|.+++.+ .+++|||+.| .-.||+. .+++....+.+ |+..|+++.|+.++ |+||..+
T Consensus 57 ~~tF~~-----H~~svFavsl~P~~~l~aTGGgDD~AflW~~-~~ge~~~eltg---HKDSVt~~~FshdgtlLATGdms 127 (399)
T KOG0296|consen 57 LVTFDK-----HTDSVFAVSLHPNNNLVATGGGDDLAFLWDI-STGEFAGELTG---HKDSVTCCSFSHDGTLLATGDMS 127 (399)
T ss_pred eeehhh-----cCCceEEEEeCCCCceEEecCCCceEEEEEc-cCCcceeEecC---CCCceEEEEEccCceEEEecCCC
Confidence 445554 99999999999 8899999999 9999999 88898889998 99999999999987 9999999
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEc
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 169 (357)
|.|+||+..++.....+. ..-..+.-+.|+| ..|++|+.||.+.+|.+
T Consensus 128 G~v~v~~~stg~~~~~~~------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLD------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ccEEEEEcccCceEEEee------------------------------cccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 999999999887655443 2345788899999 89999999999999999
Q ss_pred CcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc---------------------------
Q 038568 170 SNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK--------------------------- 221 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--------------------------- 221 (357)
.++...+.+ .+|..++++-.|.|+| +++++..||+|++||+.+.+......
T Consensus 178 p~~~~~kv~-~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVM-SGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEe-cCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 987667777 8899999999999999 59999999999999998654321100
Q ss_pred ------cceeeeeEee--------ccccceeEEEEec---CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE
Q 038568 222 ------SRHMLVTTLV--------KHRSTVNALALNG---DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC 284 (357)
Q Consensus 222 ------~~~~~~~~~~--------~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 284 (357)
...+.+.... .+...+.++.+.| .-.+.|+|+.||+|.|||+...+ ++....|...|..
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----LRHICEHEDGVTK 332 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----hheeccCCCceEE
Confidence 0111111111 1223333444433 44578899999999999998764 2334458888999
Q ss_pred EeecC-ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 285 LINVG-DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 285 ~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|.+ .+|++++.+|.|+.||.+++ +++....+|..+|.+++.+|+.+ +++|+|.|++.+|++
T Consensus 333 l~w~~t~~l~t~c~~g~v~~wDaRtG---~l~~~y~GH~~~Il~f~ls~~~~-------~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 333 LKWLNTDYLLTACANGKVRQWDARTG---QLKFTYTGHQMGILDFALSPQKR-------LVVTVSDDNTALVFE 396 (399)
T ss_pred EEEcCcchheeeccCceEEeeecccc---ceEEEEecCchheeEEEEcCCCc-------EEEEecCCCeEEEEe
Confidence 99998 59999999999999999998 88899999999999999999998 999999999999874
No 29
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=235.28 Aligned_cols=242 Identities=19% Similarity=0.281 Sum_probs=212.6
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
..+++++ |.+.|.++.|++|. |++++.||.+.|||.-+......+.
T Consensus 47 ~rr~LkG---H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip----------------------------- 94 (343)
T KOG0286|consen 47 TRRTLKG---HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP----------------------------- 94 (343)
T ss_pred eEEEecc---cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe-----------------------------
Confidence 3477888 99999999999987 9999999999999988776544443
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc------hhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEE
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY------KCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d 210 (357)
-....|..++|+| +++|+|+.|+...||++.+. +....+ .+|.+.+.|..|.+|+.|++++.|.++.+||
T Consensus 95 -l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD~~ilT~SGD~TCalWD 172 (343)
T KOG0286|consen 95 -LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDDNHILTGSGDMTCALWD 172 (343)
T ss_pred -cCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeee-cCccceeEEEEEcCCCceEecCCCceEEEEE
Confidence 4467899999999 99999999999999999865 233345 7899999999999999999999999999999
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
++ ..+....+.+|.+.|.+++++| +++.+++|+.|+..++||++.+. ..+.+.+|...|.++.|.|
T Consensus 173 ie----------~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~---c~qtF~ghesDINsv~ffP 239 (343)
T KOG0286|consen 173 IE----------TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ---CVQTFEGHESDINSVRFFP 239 (343)
T ss_pred cc----------cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc---eeEeecccccccceEEEcc
Confidence 98 6778889999999999999999 99999999999999999999886 6778899999999999987
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ -+++|++|++.|+||++..++.. +.....-..+|++++|+..++ +|++|..|..+.+||
T Consensus 240 ~G~afatGSDD~tcRlyDlRaD~~~a-~ys~~~~~~gitSv~FS~SGR-------lLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 240 SGDAFATGSDDATCRLYDLRADQELA-VYSHDSIICGITSVAFSKSGR-------LLFAGYDDFTCNVWD 301 (343)
T ss_pred CCCeeeecCCCceeEEEeecCCcEEe-eeccCcccCCceeEEEccccc-------EEEeeecCCceeEee
Confidence 7 99999999999999999874332 222334457899999999998 999999999999998
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=258.75 Aligned_cols=318 Identities=17% Similarity=0.285 Sum_probs=239.7
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccc--cceeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSH--VDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+.++....+++.+ |...|.++.|+ .++|++|+.| .++||.+ +..+. ...+.+ |..+|.+.-|..+.
T Consensus 131 ~~~pFvl~r~~~g-----~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v-~~~k~~~~~~l~g---Hkd~VvacfF~~~~ 201 (893)
T KOG0291|consen 131 EFNPFVLHRTYLG-----HFDDITSIDWSDDSRLLVTGSRDLSARLFGV-DGNKNLFTYALNG---HKDYVVACFFGANS 201 (893)
T ss_pred ccCcceEeeeecC-----CccceeEEEeccCCceEEeccccceEEEEEe-ccccccceEeccC---CCcceEEEEeccCc
Confidence 3456667777776 99999999999 8899999999 9999999 66555 445555 99999999999876
Q ss_pred --eEEeecCCeEEEEecCCc--cceee----------------------e-------eecCcc-ccceeeeecCCCeEEE
Q 038568 85 --IFTAHQDCKIRVWKITAS--RQHQL----------------------V-------STLPTV-KDRLIRSVLPNNYVTV 130 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~--~~~~~----------------------~-------~~~~~~-~~~~~~~~~~~~~~~~ 130 (357)
+++.+.||.+.+|..... ..... . .-+... .......+.+...+.+
T Consensus 202 ~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lv 281 (893)
T KOG0291|consen 202 LDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLV 281 (893)
T ss_pred ceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEE
Confidence 999999999999987621 00000 0 000000 0000011111111111
Q ss_pred eccccccc--------------ccccccEEEEEEec--CeEEEEecC-CeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 131 RRHKKRLW--------------LEHWDAVSDLVVKQ--GLMYSVSWD-RSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 131 ~~~~~~~~--------------~~~~~~v~~~~~~~--~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
.+-....+ .-...+|..++|+. +.++.|+.. |.+-+|+..+...+... .+|...+++++++|
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ-QgH~~~i~~l~YSp 360 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ-QGHSDRITSLAYSP 360 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec-cccccceeeEEECC
Confidence 11111111 11224666777775 777776654 78888888877766666 78999999999999
Q ss_pred CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee
Q 038568 194 NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA 272 (357)
Q Consensus 194 ~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 272 (357)
|| ++++|+.||.|++||.+ ...+..++..|.+.|+.+.|+..++.+++.+.||+|+.||+...+....+
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~----------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQ----------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred CCcEEEeccCCCcEEEEecc----------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 99 59999999999999987 67789999999999999999999999999999999999999987755444
Q ss_pred eeccCCccceEEEeecCceEEEecCCC-eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 273 EALWGHTGALLCLINVGDLLASGSADR-TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 273 ~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
.....-.....++.++++.+++|+.|. .|.+|++++| +.+..+.||.+||.+++|+|.+. .|+|+|.|.
T Consensus 431 t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~-------~LaS~SWDk 500 (893)
T KOG0291|consen 431 TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGS-------LLASGSWDK 500 (893)
T ss_pred cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccC-------eEEeccccc
Confidence 433322233344445577888888875 6999999998 88899999999999999999999 999999999
Q ss_pred eEEecC
Q 038568 352 EIKVWD 357 (357)
Q Consensus 352 ~v~~wd 357 (357)
+||+||
T Consensus 501 TVRiW~ 506 (893)
T KOG0291|consen 501 TVRIWD 506 (893)
T ss_pred eEEEEE
Confidence 999997
No 31
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-38 Score=232.67 Aligned_cols=247 Identities=21% Similarity=0.348 Sum_probs=204.1
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+...+..++.+++ |...|..++.+ |++.++++.| .+++||+ .+++..+.|.+ |...|.+++|++|.
T Consensus 49 d~~~G~~~r~~~G-----HsH~v~dv~~s~dg~~alS~swD~~lrlWDl-~~g~~t~~f~G---H~~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 49 DIKYGVPVRRLTG-----HSHFVSDVVLSSDGNFALSASWDGTLRLWDL-ATGESTRRFVG---HTKDVLSVAFSTDNRQ 119 (315)
T ss_pred ccccCceeeeeec-----cceEecceEEccCCceEEeccccceEEEEEe-cCCcEEEEEEe---cCCceEEEEecCCCce
Confidence 4455666777776 99999999999 9999999999 9999999 89899999999 99999999999986
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEec
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSW 160 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~ 160 (357)
+++|+.|.+|++|++........... .+.+.|+|+.|+| .++++++.
T Consensus 120 ivSGSrDkTiklwnt~g~ck~t~~~~-----------------------------~~~~WVscvrfsP~~~~p~Ivs~s~ 170 (315)
T KOG0279|consen 120 IVSGSRDKTIKLWNTLGVCKYTIHED-----------------------------SHREWVSCVRFSPNESNPIIVSASW 170 (315)
T ss_pred eecCCCcceeeeeeecccEEEEEecC-----------------------------CCcCcEEEEEEcCCCCCcEEEEccC
Confidence 99999999999999976543222211 3478999999999 58999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
|++|++||+++.+....+ .+|...++.++++||| .+++|+.||.+.+||++ ..+.++.+ .|...|.+
T Consensus 171 DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~----------~~k~lysl-~a~~~v~s 238 (315)
T KOG0279|consen 171 DKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLN----------EGKNLYSL-EAFDIVNS 238 (315)
T ss_pred CceEEEEccCCcchhhcc-ccccccEEEEEECCCCCEEecCCCCceEEEEEcc----------CCceeEec-cCCCeEee
Confidence 999999999999999988 8999999999999999 68999999999999998 34444444 57899999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeee------ccCCccceEEEeecC--ceEEEecCCCeEEEeeCC
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA------LWGHTGALLCLINVG--DLLASGSADRTVRIWQRG 307 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~ 307 (357)
++|+|+.-.|+.+. +..|+|||+.+...+..+.. .........+++|+. ..|++|-.|+.|++|.+.
T Consensus 239 l~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 239 LCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999876666554 55599999998765433321 111133456778884 499999999999999875
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=259.10 Aligned_cols=291 Identities=21% Similarity=0.303 Sum_probs=243.0
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC--ceEEEeccCCccccceeccccCCCCceEEEEEecC
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN--EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT 83 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 83 (357)
-++.|...+++.+.. -..+|..++|+ |++||.|+.. ++.||++ .+...+-..++ |...+++++++||
T Consensus 291 LyelP~f~lih~LSi-----s~~~I~t~~~N~tGDWiA~g~~klgQLlVweW-qsEsYVlKQQg---H~~~i~~l~YSpD 361 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSI-----SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEW-QSESYVLKQQG---HSDRITSLAYSPD 361 (893)
T ss_pred EEecCCceEEEEeec-----ccceeeEEEecccCCEEEEcCCccceEEEEEe-eccceeeeccc---cccceeeEEECCC
Confidence 356788888998886 66899999999 9999999988 9999999 88788878887 9999999999999
Q ss_pred c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe
Q 038568 84 K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS 159 (357)
Q Consensus 84 ~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~ 159 (357)
+ ++||+.||.|+|||..++-+ +.++. .|++.|+.++|+. +.+++.+
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC---~vTFt---------------------------eHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFC---FVTFT---------------------------EHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceE---EEEec---------------------------cCCCceEEEEEEecCCEEEEee
Confidence 7 99999999999999998854 43333 8999999999999 8899999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCC-eEEEEEccccccccccccceeeeeEeeccccce
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADG-RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
-||+|+.||+...+..+++..+......|++..|.|. +++|+.|. .|.+|+++ .++.+..+.+|.++|
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q----------TGqllDiLsGHEgPV 481 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ----------TGQLLDILSGHEGPV 481 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee----------cCeeeehhcCCCCcc
Confidence 9999999999999999999666777788999999995 55555554 59999998 678899999999999
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceee-
Q 038568 238 NALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRC- 314 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~- 314 (357)
.+++|+|.+..|++++.|++|++||+-.... ...++ .+...++.++|.|+ .|+++..||.|.+||...+.+...
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~--~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I 558 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSG--TVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI 558 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCc--eeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence 9999999999999999999999999875432 11222 35667788888755 999999999999999976522100
Q ss_pred ----------------eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 ----------------MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 ----------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...-.......+.+++++|+. .+++||....|++||
T Consensus 559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-------~IlAgG~sn~iCiY~ 610 (893)
T KOG0291|consen 559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-------CILAGGESNSICIYD 610 (893)
T ss_pred cchhhccccccccceeehhhcccCCceEEEEEcCCCC-------EEEecCCcccEEEEE
Confidence 011112346799999999999 999999999999986
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4e-38 Score=240.15 Aligned_cols=239 Identities=23% Similarity=0.384 Sum_probs=215.1
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+..+.+.+ |.+.|.|+++.|.. |++|+.|++++|||+.+++....+.
T Consensus 142 Kl~rVi~g---HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt---------------------------- 190 (460)
T KOG0285|consen 142 KLYRVISG---HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT---------------------------- 190 (460)
T ss_pred eehhhhhh---ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------------------------
Confidence 44556666 99999999999976 9999999999999999997655443
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 214 (357)
+|-..|..+++++ .++++++.|+.|+.||++..+.+..+ .+|-..|.|++.+|.- .|++|+.|.++++||++
T Consensus 191 --Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-- 265 (460)
T KOG0285|consen 191 --GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-- 265 (460)
T ss_pred --chhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHh-ccccceeEEEeccccceeEEecCCcceEEEeeec--
Confidence 8999999999999 99999999999999999999999999 8999999999999976 69999999999999999
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
....+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++. ...+..|...+.+++.+|+ .+
T Consensus 266 --------tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt---~~tlt~hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 266 --------TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKT---MITLTHHKKSVRALCLHPKENLF 334 (460)
T ss_pred --------ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCce---eEeeecccceeeEEecCCchhhh
Confidence 5667888999999999999999777899999999999999999984 4566679999999999988 77
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+++.|. |+-|++..+ ..+..+.+|..-|++++...|+ ++++|++.|.+.+||
T Consensus 335 ASas~dn-ik~w~~p~g---~f~~nlsgh~~iintl~~nsD~--------v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 335 ASASPDN-IKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG--------VLVSGGDNGSIMFWD 387 (460)
T ss_pred hccCCcc-ceeccCCcc---chhhccccccceeeeeeeccCc--------eEEEcCCceEEEEEe
Confidence 8888775 999999988 5566689999999999999998 899999999999997
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.2e-37 Score=243.89 Aligned_cols=289 Identities=20% Similarity=0.294 Sum_probs=237.5
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~ 101 (357)
|...|++++|- .-+++||+.| .|.+|+- ...+.-.+++. |..-|.|+.|+||+ +++++.||++.+||=.+
T Consensus 146 hSr~ins~~~KpsRPfRi~T~sdDn~v~ffeG-PPFKFk~s~r~---HskFV~~VRysPDG~~Fat~gsDgki~iyDGkt 221 (603)
T KOG0318|consen 146 HSRRINSVDFKPSRPFRIATGSDDNTVAFFEG-PPFKFKSSFRE---HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKT 221 (603)
T ss_pred cceeEeeeeccCCCceEEEeccCCCeEEEeeC-CCeeeeecccc---cccceeeEEECCCCCeEEEecCCccEEEEcCCC
Confidence 99999999998 6689999999 9999998 88888888887 99999999999998 99999999999999999
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc-
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV- 178 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~- 178 (357)
++....+.... +|.+.|.+++|+| ..+++++.|.+++|||+.+.+++.++
T Consensus 222 ge~vg~l~~~~---------------------------aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 222 GEKVGELEDSD---------------------------AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred ccEEEEecCCC---------------------------CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 98776665422 8999999999999 89999999999999998876544332
Q ss_pred -----------------------------------------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc
Q 038568 179 -----------------------------------------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH 216 (357)
Q Consensus 179 -----------------------------------------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 216 (357)
..+|...|+++..+|++ +|++|+.||.|.-|+...+..
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 15788999999999999 699999999999999875433
Q ss_pred cccc-c-------------------------------------------cceee-------------------eeEeecc
Q 038568 217 NKER-K-------------------------------------------SRHML-------------------VTTLVKH 233 (357)
Q Consensus 217 ~~~~-~-------------------------------------------~~~~~-------------------~~~~~~~ 233 (357)
.... + ...++ +..++.+
T Consensus 355 ~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~ 434 (603)
T KOG0318|consen 355 DRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQ 434 (603)
T ss_pred cccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecC
Confidence 2100 0 00000 0001101
Q ss_pred --------ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE
Q 038568 234 --------RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI 303 (357)
Q Consensus 234 --------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v 303 (357)
.-...+++++|++..+++|+.|+.|+||.+...... ....+..|.+++++++++|+ +||+|...+.+.+
T Consensus 435 ~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~-ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 435 TKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELK-EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVL 513 (603)
T ss_pred CcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCccc-ceeeeecccCCceEEEECCCCcEEEEeccCCcEEE
Confidence 113467899999999999999999999999876543 33345679999999999998 9999999999999
Q ss_pred eeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||+.+.+. ......-|...|.+++|+|+.. ++||||.|-.|.||+
T Consensus 514 yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~-------~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 514 YDVASREV--KTNRWAFHTAKINCVAWSPNNK-------LVATGSLDTNVIIYS 558 (603)
T ss_pred EEcccCce--ecceeeeeeeeEEEEEeCCCce-------EEEeccccceEEEEE
Confidence 99998743 3445566999999999999998 999999999999995
No 35
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.4e-36 Score=277.73 Aligned_cols=276 Identities=18% Similarity=0.270 Sum_probs=220.5
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc----c----ccceeccccCCCCceEEEEEecC---ceEEeecCCe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY----S----HVDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~----~----~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~ 93 (357)
|.+.|++++|+ +++||+|+.| .|+||+. ... . +...+. +...|.+++|++. .|++++.||+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~-~~~~~~~~~~~~~~~~~~----~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFEC-ESIIKDGRDIHYPVVELA----SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CcccccccccccceEEec----ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 89999999999 8999999999 9999997 431 1 112222 4568999999874 2999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcC
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~ 170 (357)
|++||+.+++....+ .+|...|++++|+| .+|++|+.||.|++||++
T Consensus 557 v~lWd~~~~~~~~~~------------------------------~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 557 VQVWDVARSQLVTEM------------------------------KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred EEEEECCCCeEEEEe------------------------------cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 999999877543332 28999999999986 689999999999999999
Q ss_pred cchhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 171 NYKCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 171 ~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
++..+..+ . +...+.++.|++ ++ .|++|+.|+.|++||++. .......+.+|...|.++.|. ++.+
T Consensus 607 ~~~~~~~~-~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~---------~~~~~~~~~~h~~~V~~v~f~-~~~~ 674 (793)
T PLN00181 607 QGVSIGTI-K-TKANICCVQFPSESGRSLAFGSADHKVYYYDLRN---------PKLPLCTMIGHSKTVSYVRFV-DSST 674 (793)
T ss_pred CCcEEEEE-e-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCC---------CCccceEecCCCCCEEEEEEe-CCCE
Confidence 98888777 3 346789999965 45 699999999999999971 122445667899999999997 6789
Q ss_pred EEEEecCCeEEEEecccCC---ceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeee--------
Q 038568 249 LFSGGCDRWIVVWERERDH---RMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCM-------- 315 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~-------- 315 (357)
|++++.|+.|++||++... ....+..+.+|...+.++.++++ +|++|+.|+.|++|+...+......
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred EEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 9999999999999997532 11245667789988888877765 9999999999999998754211100
Q ss_pred --eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 316 --AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 316 --~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.....|...|.+++|+|++. .|++|+.||.|++||
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~-------~lva~~~dG~I~i~~ 791 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSS-------TLVAANSTGNIKILE 791 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCC-------eEEEecCCCcEEEEe
Confidence 01234567799999999998 999999999999997
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.5e-38 Score=261.31 Aligned_cols=247 Identities=26% Similarity=0.395 Sum_probs=214.4
Q ss_pred eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 41 LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
.+=+.+.| .+.+.|. +.....+++.+ |.++|....|+|+. |++++.|+++|+|.+.+.......
T Consensus 423 ~~d~~sad~~~~~~D~-~~~~~~~~L~G---H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y--------- 489 (707)
T KOG0263|consen 423 NIDTESADVDVDMLDD-DSSGTSRTLYG---HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIY--------- 489 (707)
T ss_pred cccccccchhhhhccc-cCCceeEEeec---CCCceeeeeecccccceeeccCCcceeeeecccceeEEEe---------
Confidence 44466777 7888888 66677777888 99999999999987 999999999999999987654433
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG 195 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 195 (357)
.+|..+|+++.|+| -++||++.|++.++|.....++++.+ .+|-+.|.|+.|+|+.
T Consensus 490 ---------------------~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif-aghlsDV~cv~FHPNs 547 (707)
T KOG0263|consen 490 ---------------------KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF-AGHLSDVDCVSFHPNS 547 (707)
T ss_pred ---------------------cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh-cccccccceEEECCcc
Confidence 39999999999999 88999999999999999999999999 8999999999999998
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
++++|+.|.+||+||+. ++..++.+.+|.++|.+++|+|+|++|++|+.||.|.+||+.++. .+..
T Consensus 548 ~Y~aTGSsD~tVRlWDv~----------~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---~v~~ 614 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVS----------TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---LVKQ 614 (707)
T ss_pred cccccCCCCceEEEEEcC----------CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc---chhh
Confidence 79999999999999998 566788999999999999999999999999999999999999987 5567
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcce---------------------eeeeeecCCcCceEEEEEe
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCY---------------------RCMAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~---------------------~~~~~~~~h~~~v~~~~~~ 331 (357)
+.+|.+.+.++.|+.+ .||+|+.|++|++||+...... ..+..+..-..+|.++.|.
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~Ft 694 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFT 694 (707)
T ss_pred hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEe
Confidence 7889999999988765 9999999999999998653211 1344455566788888887
Q ss_pred eCCC
Q 038568 332 SSSS 335 (357)
Q Consensus 332 ~~~~ 335 (357)
...-
T Consensus 695 rrNl 698 (707)
T KOG0263|consen 695 RRNL 698 (707)
T ss_pred ccce
Confidence 7664
No 37
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-37 Score=227.20 Aligned_cols=273 Identities=19% Similarity=0.319 Sum_probs=226.8
Q ss_pred eEEEEe---cceEEEee-------CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEe
Q 038568 33 SCLAVH---NSLLYAAS-------LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWK 98 (357)
Q Consensus 33 ~~~~~s---~~~l~t~~-------~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd 98 (357)
.++.|| .++||++. .. .+.|-++ ...+-+..+.... -...+..++|+++. +++++.||++++||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~-~~~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEV-TDPKGIQECQSYD-TEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEec-CCCCCeEEEEeee-cccceeEeeecCCCcceEEEEecCceEEEec
Confidence 567888 56666543 23 8889998 5545554444221 67889999999865 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
+.... ..+ ..++.|...|.++.|++ ..+++++.|++|++|+...++.+
T Consensus 90 ~~~~s--~Pi---------------------------~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv 140 (311)
T KOG0277|consen 90 LTMPS--KPI---------------------------HKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV 140 (311)
T ss_pred cCCCC--cch---------------------------hHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence 64332 222 33459999999999999 67888899999999999999999
Q ss_pred hhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEE
Q 038568 176 ESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSG 252 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 252 (357)
.++ .+|...|....|+|.- .+++++.|+.+++||++. .++.+. +..|...+.++.|+. +.+.|++|
T Consensus 141 ~Tf-~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~---------~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 141 QTF-NGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRS---------PGKFMS-IEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred Eee-cCCccEEEEEecCCCCCCeEEEccCCceEEEEEecC---------CCceeE-EEeccceeEeecccccCCcEEEec
Confidence 999 8999999999999964 799999999999999982 334443 788999999999998 67799999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
+.|+.|++||++.-+. ++..+.+|.-+|..+.|+|. .|++++.|-++|+||...+. .++.+...|.+-|.++.
T Consensus 210 ~vd~~vr~wDir~~r~--pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRT--PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLD 285 (311)
T ss_pred CCCceEEEEehhhccc--cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccc
Confidence 9999999999998764 46677899999999999987 99999999999999998653 55667778999999999
Q ss_pred EeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 330 AISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++-.+ .++|+++.|+.++||+
T Consensus 286 ws~~~~------~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 286 WSLFDP------GQVASTGWDELLYVWN 307 (311)
T ss_pred cccccC------ceeeecccccceeeec
Confidence 998754 3999999999999997
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-37 Score=261.15 Aligned_cols=280 Identities=23% Similarity=0.380 Sum_probs=242.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-+..|..++|+ ..+++++-.. .|++||. .-+..+..|.. |.++|..++|+|.+ +++|+.|..|+||+..+.
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDY-RM~tli~rFde---HdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDY-RMGTLIDRFDE---HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehh-hhhhHHhhhhc---cCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 67789999999 7788888888 9999999 88999999998 99999999999998 999999999999999887
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
++...+ .+|-+.|..+.|++ ..++++|.|-+|+||+..+.+++..+ .
T Consensus 84 rclftL------------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-t 132 (1202)
T KOG0292|consen 84 RCLFTL------------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-T 132 (1202)
T ss_pred eehhhh------------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-e
Confidence 655433 39999999999999 89999999999999999999999999 9
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc-------------------cceeeeeEeeccccceeEE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK-------------------SRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~v~~~ 240 (357)
+|..-|.|..|+|.. .+++++-|.+||+||+.......... ........+.+|...|+-+
T Consensus 133 GHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 133 GHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWA 212 (1202)
T ss_pred cCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceE
Confidence 999999999999954 89999999999999987433221110 1122345678999999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
+|+|.-.++++|+.|..|++|.+...+.. ...+..+|.+.|.++-|+| +++++.++|++|+|||+... ..+..+
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tf 288 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTF 288 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeee
Confidence 99999999999999999999999866544 6678899999999999999 59999999999999999976 667777
Q ss_pred cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeE
Q 038568 319 EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEI 353 (357)
Q Consensus 319 ~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v 353 (357)
+.-.+.-+.++.+|..+ +++.|-+.|.+
T Consensus 289 rrendRFW~laahP~lN-------LfAAgHDsGm~ 316 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELN-------LFAAGHDSGMI 316 (1202)
T ss_pred eccCCeEEEEEecCCcc-------eeeeecCCceE
Confidence 77778899999999998 77777655544
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-37 Score=253.74 Aligned_cols=239 Identities=25% Similarity=0.381 Sum_probs=217.1
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
+++.. +...|.++.++|.. ++++-.+|.+.||+.++....+.+. -
T Consensus 7 rk~~~---rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe------------------------------V 53 (794)
T KOG0276|consen 7 RKFQS---RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE------------------------------V 53 (794)
T ss_pred hHhhc---cCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee------------------------------e
Confidence 44555 88999999999988 8888889999999999887665554 3
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccc
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~ 217 (357)
..-+|.+..|-+ +.+++|+.|..|++|+.++++.+..| .+|.+-|.+++.+|.. ++++++.|-.|++||.+
T Consensus 54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we----- 127 (794)
T KOG0276|consen 54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE----- 127 (794)
T ss_pred cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe-eccccceeeeeecCCCCeEEecCCccEEEEeecc-----
Confidence 356888888888 89999999999999999999999999 9999999999999988 79999999999999997
Q ss_pred cccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eE
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LL 292 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l 292 (357)
....+.+.+.+|...|.+++|+| |.+.+++++-|++|+||.+.+.. +..++.+|...|.|+.+-+. +|
T Consensus 128 ----~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~---~nfTl~gHekGVN~Vdyy~~gdkpyl 200 (794)
T KOG0276|consen 128 ----NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH---PNFTLEGHEKGVNCVDYYTGGDKPYL 200 (794)
T ss_pred ----CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC---CceeeeccccCcceEEeccCCCcceE
Confidence 46788999999999999999999 77899999999999999998776 55677899999999998643 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++|++|.+|+|||..+. .++.++.||...|..+.|+|.-+ +++|||.||+||||+
T Consensus 201 IsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lp-------iiisgsEDGTvriWh 255 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELP-------IIISGSEDGTVRIWN 255 (794)
T ss_pred EecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCc-------EEEEecCCccEEEec
Confidence 99999999999999997 88999999999999999999999 999999999999996
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-37 Score=234.50 Aligned_cols=243 Identities=23% Similarity=0.380 Sum_probs=217.3
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.++++.+.|++ |.+.|..++|+ |++||+++.| .+.+||.....+.++.+.+ |...|.++.|-|.+ ++
T Consensus 138 ~tg~~e~~LrG-----Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g---h~h~vS~V~f~P~gd~il 209 (406)
T KOG0295|consen 138 ETGELERSLRG-----HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG---HEHGVSSVFFLPLGDHIL 209 (406)
T ss_pred cchhhhhhhhc-----cccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC---cccceeeEEEEecCCeee
Confidence 46777777876 99999999999 9999999999 9999999444777888887 99999999999976 99
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
+++.|.+|+.|++.++-.+. +++ +|...|..+..+. .++++++.|.+|
T Consensus 210 S~srD~tik~We~~tg~cv~---t~~---------------------------~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 210 SCSRDNTIKAWECDTGYCVK---TFP---------------------------GHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred ecccccceeEEecccceeEE---ecc---------------------------CchHhEEEEEecCCeeEEEecCCCceE
Confidence 99999999999999985443 333 8889999999988 889999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecC--------------C--eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDN--------------G--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
++|-+.++++...+ ..|+.+|.+++|.|. + .+.+++.|++|++||+. ...++.
T Consensus 260 ~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~----------tg~cL~ 328 (406)
T KOG0295|consen 260 RVWVVATKQCKAEL-REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS----------TGMCLF 328 (406)
T ss_pred EEEEeccchhhhhh-hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc----------CCeEEE
Confidence 99999999999999 899999999999752 1 58899999999999998 678999
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
++.+|...|..++|+|.|+||+++.+|+++++||+++.++ ...+..|...++++.|+.+ ++++|+-|..+++|.-
T Consensus 329 tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c---mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 329 TLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC---MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee---eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999999999999999999999999999999998874 4566689999999999877 9999999999999964
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-37 Score=250.39 Aligned_cols=270 Identities=24% Similarity=0.368 Sum_probs=241.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|+..|.++.|+ ...++++-.+ .|.||+. ++...++.|.. ...||.+..|-+.. +++|+.|..|+||+.++.
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWny-etqtmVksfeV---~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNY-ETQTMVKSFEV---SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEec-ccceeeeeeee---cccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 88999999999 7788888788 9999999 99999999998 88999999999876 999999999999999998
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc-hhhhhcc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY-KCLESVN 179 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 179 (357)
+.+..+. .|.+.|.+++.+| .+++++|.|-+|++||.+.+ .+.+++
T Consensus 88 ekV~~Fe------------------------------AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtf- 136 (794)
T KOG0276|consen 88 EKVKTFE------------------------------AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTF- 136 (794)
T ss_pred eeeEEee------------------------------ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEE-
Confidence 7655443 8999999999999 99999999999999999864 466667
Q ss_pred ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC--CEEEEEecC
Q 038568 180 KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG--SLLFSGGCD 255 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d 255 (357)
.+|..-|.+++|+|.. .+++++-|++|++|.+. ...+..++.+|...|+|+.|-+.| .+|++|+.|
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslg----------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLG----------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcC----------CCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 9999999999999976 69999999999999997 566778889999999999998844 599999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.+|+|||.++.. +++++.||...|..+.|+|. .+++|++||++|||+..+- +....+.-.-+.|++++-.+.
T Consensus 207 ~tiKvWDyQtk~---CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~ 280 (794)
T KOG0276|consen 207 LTIKVWDYQTKS---CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKG 280 (794)
T ss_pred ceEEEeecchHH---HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCC
Confidence 999999999887 66789999999999999998 9999999999999998874 666667777789999999888
Q ss_pred CCCCCCCeEEEEEcCCCCeEEe
Q 038568 334 SSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+. .++.|.+.|.|.+
T Consensus 281 ~~-------~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 281 DG-------KIAVGFDEGSVTV 295 (794)
T ss_pred CC-------eEEEeccCCcEEE
Confidence 87 8888888887653
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.9e-37 Score=259.11 Aligned_cols=269 Identities=27% Similarity=0.488 Sum_probs=242.2
Q ss_pred CccceeEEEEecceEEEeeCC-ceEEEeccCCccccce-eccccCCCCceEEEEEe--cCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDT-FSNDLSSSGSVKSITFH--ITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~-~~~~~~~~~~v~~l~~~--~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
|...+.+..|.+.++++++.+ +|++||. .++..+.. +.+ |.+.|.++++. .+.|++|+.|.++++||..+++
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~-~~~~~i~~~l~G---H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~ 282 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDL-NNGYLILTRLVG---HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE 282 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeec-ccceEEEeeccC---CCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc
Confidence 567889999999999999999 9999999 77777777 998 99999999999 5559999999999999999997
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcccccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHE 183 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (357)
+...+. +|.+.+.++...+..+++|+.|.+|++|++.++.++..+ .+|.
T Consensus 283 C~~~l~------------------------------gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~ 331 (537)
T KOG0274|consen 283 CTHSLQ------------------------------GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL-RGHT 331 (537)
T ss_pred EEEEec------------------------------CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEe-cccc
Confidence 665543 899999999999999999999999999999999999999 6699
Q ss_pred ccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 184 DAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.+|.++..+ ...+++|+.|++|++||+. ..+++..+.+|...|+++.+.+. ..+++|+.|+.|++||+
T Consensus 332 ~~V~~v~~~-~~~lvsgs~d~~v~VW~~~----------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 332 GPVNCVQLD-EPLLVSGSYDGTVKVWDPR----------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred ccEEEEEec-CCEEEEEecCceEEEEEhh----------hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 999999998 5689999999999999998 78899999999999999988765 79999999999999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCCCCCCCCeE
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSSSSASNGIV 342 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~ 342 (357)
++.. ..+..+.+|..-+..+.+.+++|++++.|+.|++||..++ +++..+.+ |...|+.+++. ..
T Consensus 400 ~~~~--~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~------- 465 (537)
T KOG0274|consen 400 RTKR--KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KE------- 465 (537)
T ss_pred Cchh--hhhhhhcCCcccccccccccceeEeccccccEEEeecccC---ceeeeeccCCcccEEEeecC--cc-------
Confidence 9883 2677888999999999999999999999999999999998 66777777 67889999887 22
Q ss_pred EEEEcCCCCeEEecC
Q 038568 343 SIGSGSLNGEIKVWD 357 (357)
Q Consensus 343 ~l~s~~~dg~v~~wd 357 (357)
.+++++.||.+++||
T Consensus 466 ~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWD 480 (537)
T ss_pred eEEEEecCCeeEEEe
Confidence 788899999999997
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=251.31 Aligned_cols=271 Identities=18% Similarity=0.331 Sum_probs=236.4
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~ 103 (357)
|...|.+++++ ...+++|+.+.|+||+. ++.+.++++.. +.+.+..|.|.. +++|...|.+.++|+.+..
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~-~t~kciRTi~~-----~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNR-DTLKCIRTITC-----GYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEc-cCcceeEEecc-----ccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 99999999999 34444554459999999 99999999964 489999999975 9999999999999999887
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh-----hh
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC-----LE 176 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-----~~ 176 (357)
....+. .|.+.|++++..| ..+++|+.|.+|++||..--.. ..
T Consensus 446 l~Eti~------------------------------AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 446 LVETIR------------------------------AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred hhhhhh------------------------------ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence 655543 8999999999999 8999999999999999753111 11
Q ss_pred hc------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE
Q 038568 177 SV------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 177 ~~------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (357)
.+ .......|.|+.++||+ +|+++--|.+|++|-+. ..+....+.+|.-||.||..+||++.+
T Consensus 496 ~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD----------tlKFflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD----------TLKFFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec----------ceeeeeeecccccceeEEeccCCcCeE
Confidence 01 12446789999999999 58888899999999988 567788899999999999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEE
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~ 327 (357)
++|+.|..|++|-++=+. +.+.+.+|...|+++.|-|+ .+.++|.|+.|+-||-.+ +..+..+.+|...|++
T Consensus 566 vTgSADKnVKiWGLdFGD---CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---Fe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFGD---CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---FEEIQKLDGHHSEVWC 639 (888)
T ss_pred EeccCCCceEEeccccch---hhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh---hhhheeeccchheeee
Confidence 999999999999998777 56788899999999999998 899999999999999886 4788999999999999
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++.+|+|. +++|+|.|..||+|.
T Consensus 640 Lav~~~G~-------~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 640 LAVSPNGS-------FVVSSSHDKSIRLWE 662 (888)
T ss_pred eEEcCCCC-------eEEeccCCceeEeee
Confidence 99999999 999999999999995
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=8e-38 Score=242.17 Aligned_cols=233 Identities=24% Similarity=0.413 Sum_probs=206.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|..+|+++.|+ +.++++|+.+ .|++|+. ....++.++. .|...|++++|+|+. +++++.||+|+|||....
T Consensus 137 HDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp--nmnnVk~~~a--hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 137 HDSPVRTMKWSHNGTWMISGDKGGMIKYWQP--NMNNVKIIQA--HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred hcccceeEEEccCCCEEEEcCCCceEEeccc--chhhhHHhhH--hhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 99999999999 9999999999 9999997 4466777766 245999999999965 999999999999999876
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+....+ .+|.-.|.+++|+| .++++++.|..|++||.+++.++.++ .
T Consensus 213 kee~vL------------------------------~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h 261 (464)
T KOG0284|consen 213 KEERVL------------------------------RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-H 261 (464)
T ss_pred chhhee------------------------------ccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-h
Confidence 654333 29999999999999 89999999999999999999999999 8
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWI 258 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 258 (357)
.|+..|..+.|++++ +|++++.|..++++|++ ..+.+..+++|+..|+++.|+| ...+|.+|+.||.|
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR----------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR----------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehh----------HhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999998 79999999999999998 4556778899999999999999 66799999999999
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
..|.+...++ ......+|...|.+++|+|- +|++|+.|.++++|.-.
T Consensus 332 vh~~v~~~~p--~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEP--LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEecccccc--ccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9999985443 23344579999999999986 99999999999999754
No 45
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-35 Score=245.52 Aligned_cols=321 Identities=22% Similarity=0.344 Sum_probs=239.6
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec-Cc-eEEee
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI-TK-IFTAH 89 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~-l~~~~ 89 (357)
...-++. | |+.+|+++.|+ |..||+||.| .|.+||+ -...-+..+++ |...|+.+-|.. +. +++.+
T Consensus 98 ~~~~tfn---g--HK~AVt~l~fd~~G~rlaSGskDt~IIvwDl-V~E~Gl~rL~G---Hkd~iT~~~F~~~~~~lvS~s 168 (888)
T KOG0306|consen 98 EILITFN---G--HKAAVTTLKFDKIGTRLASGSKDTDIIVWDL-VGEEGLFRLRG---HKDSITQALFLNGDSFLVSVS 168 (888)
T ss_pred ceeeeec---c--cccceEEEEEcccCceEeecCCCccEEEEEe-ccceeeEEeec---chHHHhHHhccCCCeEEEEec
Confidence 3444555 4 99999999999 9999999999 9999999 66677778888 999999999998 44 99999
Q ss_pred cCCeEEEEecCCccceeeeeecCcc--------------------------------------------------cccee
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTV--------------------------------------------------KDRLI 119 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~--------------------------------------------------~~~~~ 119 (357)
.|+.|++||+++..+........+. .++..
T Consensus 169 KDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i 248 (888)
T KOG0306|consen 169 KDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREI 248 (888)
T ss_pred cCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCcee
Confidence 9999999999774322111000000 00000
Q ss_pred e-eecCC-CeEEEecccc--------------------------------------------------------------
Q 038568 120 R-SVLPN-NYVTVRRHKK-------------------------------------------------------------- 135 (357)
Q Consensus 120 ~-~~~~~-~~~~~~~~~~-------------------------------------------------------------- 135 (357)
. ....+ .++...+...
T Consensus 249 ~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv 328 (888)
T KOG0306|consen 249 NLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDV 328 (888)
T ss_pred EEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEE
Confidence 0 00000 0000000000
Q ss_pred --------------------------------------cccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhh
Q 038568 136 --------------------------------------RLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 136 --------------------------------------~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
-...+|...|.+++++. +.++..+..+.+++|+..+.+++.
T Consensus 329 ~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciR 408 (888)
T KOG0306|consen 329 TPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIR 408 (888)
T ss_pred EecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeE
Confidence 11257888999999999 555555556789999988777665
Q ss_pred hc---------------------------------------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc
Q 038568 177 SV---------------------------------------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH 216 (357)
Q Consensus 177 ~~---------------------------------------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 216 (357)
++ ..+|.+.+.+++.+||+ .+++|+.|.+|++||......
T Consensus 409 Ti~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 409 TITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred EeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence 54 15688999999999999 499999999999999875433
Q ss_pred ccccccce-ee-eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 217 NKERKSRH-ML-VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 217 ~~~~~~~~-~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
.+...... .. ......-...|.|+.+||||++|+++--|++++||-+++-+ ..-.+.||.-||.|+..+++ ++
T Consensus 489 ~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeeecccccceeEEeccCCcCeE
Confidence 11111000 00 01112245779999999999999999999999999999776 66788899999999987776 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+||+.|..|++|-+.=| .|-..+-+|.+.|.++.|.|... .+.|+|.|+.|+-||
T Consensus 566 vTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V~F~P~~~-------~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 566 VTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSVQFLPKTH-------LFFTCGKDGKVKQWD 620 (888)
T ss_pred EeccCCCceEEeccccc---hhhhhhhcccCceeEEEEcccce-------eEEEecCcceEEeec
Confidence 99999999999999987 66677889999999999999887 999999999999997
No 46
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.2e-34 Score=213.14 Aligned_cols=243 Identities=23% Similarity=0.362 Sum_probs=210.5
Q ss_pred ccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
.++.+++ |.+.+..++|+|. + |++++.|+.|++|+...+....+...+.
T Consensus 6 ~~~~~~g---h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld------------------------- 57 (312)
T KOG0645|consen 6 LEQKLSG---HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD------------------------- 57 (312)
T ss_pred eEEeecC---CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc-------------------------
Confidence 4556676 9999999999998 3 9999999999999998655444444433
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCc--chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN--YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~ 212 (357)
.+|...|.+++|+| ++|++++.|.++.||.-.. .+++..+ .+|...|.|++|+++| +|++++.|..|-+|.+.
T Consensus 58 -~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l-EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 58 -DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL-EGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred -ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee-eccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 28999999999999 9999999999999997653 4678888 8999999999999999 69999999999999986
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
+ .....+...+..|...|..+.|+|...+|++++.|++|++|+-..+.......++.+|...|.+++|++.
T Consensus 136 ------e-ddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 136 ------E-DDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred ------C-CCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence 2 2357788899999999999999999899999999999999998866667788899999999999999875
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|++++.|++++||...+. ....|+.++..+.|. ++ .|+|++.|+.|++|
T Consensus 209 rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~~Y~v~W~-~~--------~IaS~ggD~~i~lf 258 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTD-------LSGMHSRALYDVPWD-NG--------VIASGGGDDAIRLF 258 (312)
T ss_pred eEEEecCCcceEeeeeccC-------cchhcccceEeeeec-cc--------ceEeccCCCEEEEE
Confidence 9999999999999997643 123478899999999 54 89999999999987
No 47
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-35 Score=214.51 Aligned_cols=276 Identities=13% Similarity=0.198 Sum_probs=220.0
Q ss_pred CCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEE
Q 038568 23 PSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVW 97 (357)
Q Consensus 23 ~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vw 97 (357)
++| |..+++.+.|+ |++|++++.| +..||-. .+++.+.++.+ |.+.|.|++..-+. +++|+.|.++++|
T Consensus 6 l~G--HERplTqiKyN~eGDLlFscaKD~~~~vw~s-~nGerlGty~G---HtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 6 LQG--HERPLTQIKYNREGDLLFSCAKDSTPTVWYS-LNGERLGTYDG---HTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccc--CccccceEEecCCCcEEEEecCCCCceEEEe-cCCceeeeecC---CCceEEEEEecCCcceeeeccccceeEEE
Confidence 345 99999999999 9999999999 9999998 89999999999 99999999887654 9999999999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-----CCeEEEEEcC
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-----DRSFKIWNAS 170 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~ 170 (357)
|+++++++.... ...+|..+.|+. ++++.... .+.|.++|++
T Consensus 80 Dv~tGk~la~~k-------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 80 DVETGKQLATWK-------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred EcCCCcEEEEee-------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 999998776654 356899999999 44444332 3679999998
Q ss_pred -------cchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 171 -------NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 171 -------~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
..+++..+ ..+.+.++.+-|.|-+ .|++|..||.|..||.++ ..+.+.....|...|+.|.+
T Consensus 129 ~~~~~~~s~ep~~kI-~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~---------g~~~v~s~~~h~~~Ind~q~ 198 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKI-PTPDSKITSALWGPLGETIIAGHEDGSISIYDART---------GKELVDSDEEHSSKINDLQF 198 (327)
T ss_pred CChhhhcccCceEEe-cCCccceeeeeecccCCEEEEecCCCcEEEEEccc---------Cceeeechhhhccccccccc
Confidence 34455666 5677899999999988 599999999999999982 23566667789999999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE--eeCCCCc--------
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI--WQRGKEN-------- 310 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v--w~~~~~~-------- 310 (357)
++|..++++++.|.+-++||.++-+.+.... ...++.+.+++|. .++.|+.-..--| =+.+.++
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~ 274 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL 274 (327)
T ss_pred cCCcceEEecccCccceeeeccceeeEEEee----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH
Confidence 9999999999999999999999876443332 3567888888774 5554443222111 1112221
Q ss_pred -ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 311 -CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 311 -~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..+.+...++|-+||++++|+|+++ ..+||+.||.||+.
T Consensus 275 i~eEEigrvkGHFGPINsvAfhPdGk-------sYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPINSVAFHPDGK-------SYSSGGEDGYVRLH 314 (327)
T ss_pred HHHHHhccccccccCcceeEECCCCc-------ccccCCCCceEEEE
Confidence 0134567889999999999999999 99999999999973
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-36 Score=217.75 Aligned_cols=269 Identities=18% Similarity=0.279 Sum_probs=226.9
Q ss_pred CccceeEEEEe-----cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH-----NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s-----~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~ 99 (357)
|+.+|-.++|+ |-+|++++.| .=.+-+- +++.=+.+|.+ |.+.|.+...+.+. -++++.|-+.++||.
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g-~tgdwigtfeg---hkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG-DTGDWIGTFEG---HKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccC-CCCCcEEeeec---cCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 99999999999 7899999999 8888888 88999999999 99999999998875 788899999999999
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-hhh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-CLE 176 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~ 176 (357)
-++..+..+ .|..-|.+++|+. ++|++|+.+..+++||++..+ +..
T Consensus 89 ~tgdelhsf-------------------------------~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 89 VTGDELHSF-------------------------------EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred hhhhhhhhh-------------------------------hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence 988765544 7888999999999 999999999999999998765 455
Q ss_pred hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 177 SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
.+ .+|.+.|..+.|.... .|+++..|++||+||.+ ....+..+. ...+|+++.++++|++|.++ ..
T Consensus 138 E~-~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r----------Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~g 204 (334)
T KOG0278|consen 138 EI-SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR----------TGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YG 204 (334)
T ss_pred hh-cCCCCcceeEEEeccCceEEeeccCCceEEEEec----------cCcEEEEEe-cCCCCcceeeccCCCEEEEe-cC
Confidence 55 8999999999997655 68888999999999998 444555554 46789999999999877665 55
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+.|.+||..+-..+.... -...|.+.+.+|+ .+++|+.|..++.||..+++.... ..++|.++|.++.|+|+
T Consensus 205 ssV~Fwdaksf~~lKs~k----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 205 SSVKFWDAKSFGLLKSYK----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPD 278 (334)
T ss_pred ceeEEeccccccceeecc----CccccccccccCCCceEEecCcceEEEEEeccCCceeee--cccCCCCceEEEEECCC
Confidence 679999999776443322 2345666666665 999999999999999999853332 24899999999999999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. ..++||.||+||+|.
T Consensus 279 GE-------~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 279 GE-------LYASGSEDGTIRLWQ 295 (334)
T ss_pred Cc-------eeeccCCCceEEEEE
Confidence 99 999999999999995
No 49
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-34 Score=236.90 Aligned_cols=266 Identities=20% Similarity=0.311 Sum_probs=227.4
Q ss_pred EEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeec
Q 038568 35 LAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 35 ~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
+.|+ .+.||+|....|++|+. .+++....... +...|+++.|++++ |++|..+|.|.|||..+.+....+..
T Consensus 183 ldWss~n~laValg~~vylW~~-~s~~v~~l~~~---~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~- 257 (484)
T KOG0305|consen 183 LDWSSANVLAVALGQSVYLWSA-SSGSVTELCSF---GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG- 257 (484)
T ss_pred hhcccCCeEEEEecceEEEEec-CCCceEEeEec---CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC-
Confidence 4555 67888887779999999 77776666654 58999999999988 99999999999999987765554431
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
.|...|.+++|....+.+|+.|+.|..+|++..+.......+|...|..+.|
T Consensus 258 ----------------------------~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 258 ----------------------------SHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred ----------------------------CcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 3899999999999999999999999999999988776633889999999999
Q ss_pred ecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEe--cCCeEEEEecccCC
Q 038568 192 SDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGG--CDRWIVVWERERDH 267 (357)
Q Consensus 192 ~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~i~vwd~~~~~ 267 (357)
++++ ++++|+.|+.+.|||.. ...+...+..|...|..++|+| ...+||+|+ .|+.|++||..++.
T Consensus 310 s~d~~~lASGgnDN~~~Iwd~~----------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 310 SPDGNQLASGGNDNVVFIWDGL----------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred CCCCCeeccCCCccceEeccCC----------CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 9999 69999999999999986 4567788889999999999999 667888876 49999999999887
Q ss_pred ceeeeeeccCCccceEEEeecCce--EEE--ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEE
Q 038568 268 RMVFAEALWGHTGALLCLINVGDL--LAS--GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v~~~~~~~~~--l~~--~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 343 (357)
.+..+. ....|..+.|++.+ |++ |..++.|.||+..+. ..+..+.+|...|..++++||+. .
T Consensus 380 ~i~~vd----tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~-------~ 445 (484)
T KOG0305|consen 380 RIDSVD----TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGE-------T 445 (484)
T ss_pred Eecccc----cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCC-------E
Confidence 543332 45779999999872 443 445789999999985 77889999999999999999998 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
+++|+.|.++++|+
T Consensus 446 i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 446 IVTGAADETLRFWN 459 (484)
T ss_pred EEEecccCcEEecc
Confidence 99999999999996
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-33 Score=210.83 Aligned_cols=275 Identities=17% Similarity=0.236 Sum_probs=213.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC--ceEEeec--CCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT--KIFTAHQ--DCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~--d~~i~vwd~~ 100 (357)
-.+.|+++.|+ |.+|++++.| .++|||. .++..++++.. +.-.|..+.|... .++.++. |.+|+.-++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~-~~g~~~~ti~s---kkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDS-LSGKQVKTINS---KKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEc-CCCceeeEeec---ccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 56789999999 9999999999 9999999 99999999987 8888888988743 3555555 8899999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+.+.++.+ .+|...|.+++.+| +.+++++.|++|++||++..++...+
T Consensus 89 dNkylRYF------------------------------~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 89 DNKYLRYF------------------------------PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred cCceEEEc------------------------------CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 88655433 39999999999999 99999999999999999988887766
Q ss_pred cccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 179 NKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.. ..-..++|.|+|. +|++.....|++||+|..+.. +........+.....+.|.|+|||++|+.++..+.
T Consensus 139 -~~--~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg-----PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 139 -NL--SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG-----PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred -ec--CCCcceeECCCCcEEEEecCCCeEEEEEecccCCC-----CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 22 2334578999996 666666669999999943221 11111111144677899999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSS 334 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 334 (357)
+++.|.-++.....+........--....|.|+ ++++|+.||+|.+|+++++ ..+..+++ +.+++.++.|+|..
T Consensus 211 ~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG---KKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred EEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC---cEeeEecCCCCCCccccccCCce
Confidence 999999988844333332222211244455554 9999999999999999998 55666777 78999999999987
Q ss_pred CCCCCCeEEEEEcCCCCeEEec
Q 038568 335 SSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~v~~w 356 (357)
. +++|++ ..+-+|
T Consensus 288 ~-------mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 288 A-------MFVSAS--SNLVFW 300 (311)
T ss_pred e-------eeeecC--ceEEEE
Confidence 6 777764 456665
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-34 Score=215.64 Aligned_cols=243 Identities=24% Similarity=0.399 Sum_probs=203.0
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
++..+.+ |++.|+.+.|+|++ |++|+.|..|.+|++..... .+. ++
T Consensus 39 p~m~l~g---h~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce--N~~---------------------------~l 86 (338)
T KOG0265|consen 39 PIMLLPG---HKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE--NFW---------------------------VL 86 (338)
T ss_pred hhhhcCC---CcceEEEEEECCCCCeEeecCCcceEEEEecccccc--cee---------------------------ee
Confidence 4455566 99999999999988 99999999999999764432 111 12
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~ 214 (357)
.+|++.|..+.|.+ +.+++++.|.+++.||+++|+++..+ ..|...++++....-| .+.+++.|+++++||+|
T Consensus 87 kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-- 163 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-- 163 (338)
T ss_pred ccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeec--
Confidence 39999999999999 99999999999999999999999999 8999999999855555 48889999999999998
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
....+..+. .+..++++.|..++..+.+|+-|+.|++||++.+. ....+.||..+|+.++.+++ ++
T Consensus 164 --------~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d---~~~~lsGh~DtIt~lsls~~gs~l 231 (338)
T KOG0265|consen 164 --------KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND---GLYTLSGHADTITGLSLSRYGSFL 231 (338)
T ss_pred --------ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc---ceEEeecccCceeeEEeccCCCcc
Confidence 333333332 45678999999999999999999999999999877 56678899999998887765 99
Q ss_pred EEecCCCeEEEeeCCCCcc-eeeeeeecCCcC----ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENC-YRCMAFLEGHEK----PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~-~~~~~~~~~h~~----~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+-+.|.++++||++.-.+ .+++..+.+|.. .....+|+|++. .+..|+.|..+++||
T Consensus 232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~-------~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT-------KITAGSADRFVYVWD 294 (338)
T ss_pred ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC-------ccccccccceEEEee
Confidence 9999999999999986432 244777777643 355778999998 999999999999997
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-35 Score=213.87 Aligned_cols=252 Identities=21% Similarity=0.259 Sum_probs=210.1
Q ss_pred cccccc-ccccceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEE
Q 038568 4 LHSVSS-EAFKHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSI 78 (357)
Q Consensus 4 ~~~~~~-~~~~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l 78 (357)
+++.+. ..+..+..+.+. -.+.+..++|+ .+.+++++.| .++|||+.....+++.++. |...|.++
T Consensus 40 L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE---H~~EV~Sv 110 (311)
T KOG0277|consen 40 LFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE---HKREVYSV 110 (311)
T ss_pred EEEEecCCCCCeEEEEeee------cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh---hhhheEEe
Confidence 333444 345556666666 67889999999 7889999999 9999998666789999998 99999999
Q ss_pred EEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---
Q 038568 79 TFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--- 152 (357)
Q Consensus 79 ~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 152 (357)
.|++.. +++++.|++|++|+...+..+..+ .+|...|...+|+|
T Consensus 111 dwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf------------------------------~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 111 DWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF------------------------------NGHNSCIYQAAFSPHIP 160 (311)
T ss_pred ccccccceeEEeeccCCceEeecCCCCcceEee------------------------------cCCccEEEEEecCCCCC
Confidence 999753 888899999999999877544332 28999999999999
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
+.+++++.|+.+++||++..-....+ ..|...+.++.|+.-. .+++|+.|+.|+.||++. ...++..+
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~---------~r~pl~eL 230 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN---------LRTPLFEL 230 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhh---------ccccceee
Confidence 99999999999999999875444446 7899999999999755 599999999999999992 34568888
Q ss_pred eccccceeEEEEecC-CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC---ceEEEecCCCeEEEeeC
Q 038568 231 VKHRSTVNALALNGD-GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG---DLLASGSADRTVRIWQR 306 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vw~~ 306 (357)
.+|.-.|..+.|+|. ...|++++.|-+++|||...+.. .+.+...|...+..+.|+. .++|+++.|+.++||+.
T Consensus 231 ~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds--~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 231 NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS--AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cCCceEEEEEecCcchhhHhhhccccceEEecccccchh--hhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999999994 45899999999999999986553 4455567888888888764 49999999999999984
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.6e-35 Score=246.63 Aligned_cols=238 Identities=25% Similarity=0.389 Sum_probs=213.9
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....|..++|+|.+ ++++-..|.|++||.+-+..+..+. .|.++|..+
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd------------------------------eHdGpVRgv 57 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD------------------------------EHDGPVRGV 57 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh------------------------------ccCCcccee
Confidence 67789999999998 9999999999999998876655443 899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccccee
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
+|+| .++++|+.|-.|++|+.++.+++.++ .+|-+.|..+.|++.- .+++++.|.+|+||+.. ..+
T Consensus 58 ~FH~~qplFVSGGDDykIkVWnYk~rrclftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq----------sr~ 126 (1202)
T KOG0292|consen 58 DFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ----------SRK 126 (1202)
T ss_pred eecCCCCeEEecCCccEEEEEecccceehhhh-ccccceeEEeeccCCCceEEEccCCCeEEEEecc----------CCc
Confidence 9999 89999999999999999999999999 9999999999999987 69999999999999998 678
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC--------------------------ceeeeeeccCCc
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH--------------------------RMVFAEALWGHT 279 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--------------------------~~~~~~~~~~~~ 279 (357)
++..+.+|...|.|..|+|....+++++-|.+|||||+..-+ .......+.||.
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 899999999999999999999999999999999999985211 011234567899
Q ss_pred cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 280 GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 280 ~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|...+|+|. +|++|++|..|++|..+..+.++ +.+..+|.+.|+++-|+|... +++|.|.|++||+||
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE-vDtcrgH~nnVssvlfhp~q~-------lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE-VDTCRGHYNNVSSVLFHPHQD-------LILSNSEDKSIRVWD 278 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEecccccee-ehhhhcccCCcceEEecCccc-------eeEecCCCccEEEEe
Confidence 99999999996 99999999999999998765555 667899999999999999887 999999999999998
No 54
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.5e-35 Score=227.93 Aligned_cols=280 Identities=22% Similarity=0.298 Sum_probs=227.4
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc--ccceeccccCCCCceEEEEEecCc--e
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS--HVDTFSNDLSSSGSVKSITFHITK--I 85 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~--l 85 (357)
+.++...+.. |.+.|..+.|- ...|++|+.| .|++|+. ...+ .+.++.+ ..++|+++.|.+++ +
T Consensus 164 pS~~~~~ld~-----h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v-~~~k~~~~~tLaG---s~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 164 PSRALFVLDA-----HEGEVHDVEFLRNSDTLATGGSDRIIKLWNV-LGEKSELISTLAG---SLGNITSIDFDSDNKHV 234 (459)
T ss_pred chhhhhhhhc-----cccccceeEEccCcchhhhcchhhhhhhhhc-ccchhhhhhhhhc---cCCCcceeeecCCCceE
Confidence 4455666666 99999999998 4899999999 9999999 6554 6777877 88999999999876 8
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
++++.|+.+++|+++..+....+. +|.+.|+++.|.. ..+++|+.|.+
T Consensus 235 iAas~d~~~r~Wnvd~~r~~~TLs------------------------------GHtdkVt~ak~~~~~~~vVsgs~DRt 284 (459)
T KOG0288|consen 235 IAASNDKNLRLWNVDSLRLRHTLS------------------------------GHTDKVTAAKFKLSHSRVVSGSADRT 284 (459)
T ss_pred EeecCCCceeeeeccchhhhhhhc------------------------------ccccceeeehhhccccceeeccccch
Confidence 999999999999999886654443 9999999999988 44999999999
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
|++||+....|..++ -....+..|+.. ...+++|-.|++|++||.+ ...+......+ +.|+++..+
T Consensus 285 iK~WDl~k~~C~kt~--l~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~R----------s~~~~~sv~~g-g~vtSl~ls 350 (459)
T KOG0288|consen 285 IKLWDLQKAYCSKTV--LPGSQCNDIVCS-ISDVISGHFDKKVRFWDIR----------SADKTRSVPLG-GRVTSLDLS 350 (459)
T ss_pred hhhhhhhhhheeccc--cccccccceEec-ceeeeecccccceEEEecc----------CCceeeEeecC-cceeeEeec
Confidence 999999998888887 345556667665 3358899999999999998 34455555544 489999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeec---cCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeee
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEAL---WGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFL 318 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 318 (357)
+++..|++++.|.++.+.|+++.+...++... .+|. .+.+.|+|+ |+++|+.||.|+||++.++ ++...+
T Consensus 351 ~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l 425 (459)
T KOG0288|consen 351 MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVL 425 (459)
T ss_pred cCCeEEeeecCCCceeeeecccccEEEEeeccccccccc--cceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEe
Confidence 99999999999999999999987644333221 1222 455556655 9999999999999999998 444444
Q ss_pred cCCcC--ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 319 EGHEK--PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 319 ~~h~~--~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..... .|++++|+|.+. .|++++.++.+.+|.
T Consensus 426 ~~s~s~~aI~s~~W~~sG~-------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 426 SLSTSNAAITSLSWNPSGS-------GLLSADKQKAVTLWT 459 (459)
T ss_pred ccCCCCcceEEEEEcCCCc-------hhhcccCCcceEecC
Confidence 44333 599999999998 999999999999994
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.3e-35 Score=220.48 Aligned_cols=289 Identities=19% Similarity=0.285 Sum_probs=235.7
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceecccc-----CCCCceEEEEEecCc
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDL-----SSSGSVKSITFHITK 84 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~-----~~~~~v~~l~~~~~~ 84 (357)
+.+..+.++. | .++.+.|..|+ |+||++|+.| .|.+|+. .+++..+.++-.. .+..+|.|+.|+.|.
T Consensus 201 Pt~l~r~IKF--g--~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 201 PTQLARSIKF--G--QKSHVECARFSPDGQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS 275 (508)
T ss_pred hHHhhhheec--c--cccchhheeeCCCCceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeecccH
Confidence 4445555554 4 67789999999 9999999999 9999999 8877665443211 378899999999886
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
+++|+.||.|++|.+.++.+++.+.. .|...|+|+.|+. ..+++++.
T Consensus 276 EMlAsGsqDGkIKvWri~tG~ClRrFdr-----------------------------AHtkGvt~l~FSrD~SqiLS~sf 326 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETGQCLRRFDR-----------------------------AHTKGVTCLSFSRDNSQILSASF 326 (508)
T ss_pred HHhhccCcCCcEEEEEEecchHHHHhhh-----------------------------hhccCeeEEEEccCcchhhcccc
Confidence 99999999999999999987766653 8999999999999 88999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee--ccccce
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV--KHRSTV 237 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~v 237 (357)
|.++++.-+++|+++..+ .+|.+.|+...|.++| .+++++.||+|++|+.. ...++.+++ +...+|
T Consensus 327 D~tvRiHGlKSGK~LKEf-rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K----------tteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 327 DQTVRIHGLKSGKCLKEF-RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK----------TTECLSTFKPLGTDYPV 395 (508)
T ss_pred cceEEEeccccchhHHHh-cCccccccceEEcCCCCeEEEecCCccEEEecCc----------chhhhhhccCCCCcccc
Confidence 999999999999999999 9999999999999999 69999999999999988 333444443 345678
Q ss_pred eEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE--EeecCceEEEecCCCeEEEeeCCCCcceee
Q 038568 238 NALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLASGSADRTVRIWQRGKENCYRC 314 (357)
Q Consensus 238 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 314 (357)
+.+..-| +...++++...++|+|.++.. +....+..-....+...+ ++..++++.+.++|+.++.|.+.++ ..
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~L 471 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KL 471 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ce
Confidence 8887777 556888888999999999873 322222221122233333 4455669999999999999999998 66
Q ss_pred eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..++..|...|.+++-+|-.+ .|++-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHqN-------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQN-------LLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCcccc-------hhhhhcccchhhhcC
Confidence 778889999999999999988 999999999999994
No 56
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=217.04 Aligned_cols=290 Identities=18% Similarity=0.313 Sum_probs=225.7
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC------------------ccccceecc
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD------------------YSHVDTFSN 67 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~------------------~~~~~~~~~ 67 (357)
++++.++....-. |++++.+.+|+ |.++|||+.| .|+|.|+ +. -..++++..
T Consensus 98 ~e~~~yEt~ylt~------HK~~cR~aafs~DG~lvATGsaD~SIKildv-ermlaks~~~em~~~~~qa~hPvIRTlYD 170 (430)
T KOG0640|consen 98 PEPSEYETKYLTS------HKSPCRAAAFSPDGSLVATGSADASIKILDV-ERMLAKSKPKEMISGDTQARHPVIRTLYD 170 (430)
T ss_pred CCCcccceEEEee------cccceeeeeeCCCCcEEEccCCcceEEEeeh-hhhhhhcchhhhccCCcccCCceEeehhh
Confidence 3444444444333 99999999999 9999999999 9999999 41 123456665
Q ss_pred ccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccE
Q 038568 68 DLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145 (357)
Q Consensus 68 ~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (357)
|..+|+++.|+|.. |++++.|++|+++|+......+.++.+ ....+|
T Consensus 171 ---H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~----------------------------qd~~~v 219 (430)
T KOG0640|consen 171 ---HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF----------------------------QDTEPV 219 (430)
T ss_pred ---ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh----------------------------hcccee
Confidence 99999999999976 999999999999999877655555444 345689
Q ss_pred EEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc
Q 038568 146 SDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 146 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
.++.|+| .+|+.|..-.++++||+++.++...-. ..|...|+++.+++.+ ..++++.||.|++||--
T Consensus 220 rsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGV-------- 291 (430)
T KOG0640|consen 220 RSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGV-------- 291 (430)
T ss_pred eeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccc--------
Confidence 9999999 899999999999999999988765432 5688999999999999 58999999999999965
Q ss_pred ccceeeeeEee-cc-ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---eEEEeecC--ceEE
Q 038568 221 KSRHMLVTTLV-KH-RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---LLCLINVG--DLLA 293 (357)
Q Consensus 221 ~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~--~~l~ 293 (357)
..+++..+. .| ...|.+..|..+++++++.+.|..+++|.+.+++.+...... |-.+. -+...|+. ++++
T Consensus 292 --S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA-g~tgrq~~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 292 --SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA-GTTGRQKHRTQAVFNHTEDYVL 368 (430)
T ss_pred --cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC-CcccchhhhhhhhhcCccceEE
Confidence 344444443 34 357899999999999999999999999999999865433211 11111 12233433 3555
Q ss_pred Eec-CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 294 SGS-ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 294 ~~~-~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.-. ..+.+.-||.++..... ....+|++++..+.-+|.++ .++|||.|-.+|+|
T Consensus 369 ~pDEas~slcsWdaRtadr~~--l~slgHn~a~R~i~HSP~~p-------~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 369 FPDEASNSLCSWDARTADRVA--LLSLGHNGAVRWIVHSPVEP-------AFMTCSDDFRARFW 423 (430)
T ss_pred ccccccCceeeccccchhhhh--hcccCCCCCceEEEeCCCCC-------ceeeecccceeeee
Confidence 444 46789999999975333 33468999999999999999 99999999999999
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.9e-33 Score=204.82 Aligned_cols=264 Identities=15% Similarity=0.197 Sum_probs=217.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC---ceEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~i~vwd~~~ 101 (357)
|...|.+++|+ |..|++|+.| ++.+|++ +..+....+.. .+|.+.|-.++|+|. .+++++.|.+|++||++.
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~-e~~r~~~~~~~-~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~ 96 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFDKTVSVWNL-ERDRFRKELVY-RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS 96 (313)
T ss_pred hhhcceEEEEcccCceeeecccCCceEEEEe-cchhhhhhhcc-cCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence 99999999999 9999999999 9999999 66555444332 239999999999964 499999999999999999
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 179 (357)
++....+.. ...=.-+.|+| ++++.++.|..|...|.++.+.....
T Consensus 97 ~k~~~~i~~-------------------------------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~- 144 (313)
T KOG1407|consen 97 GKCTARIET-------------------------------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE- 144 (313)
T ss_pred CcEEEEeec-------------------------------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh-
Confidence 987655542 22334567777 99999999999999999998887776
Q ss_pred ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeE
Q 038568 180 KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 258 (357)
.....+..++|+.++ .++.....|.|.|.... ..+++..+..|.....|+.|+|+|+++|+|+.|..+
T Consensus 145 -~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp----------sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 145 -QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP----------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred -cccceeeeeeecCCCCEEEEecCCceEEEEecc----------ccccccccccCCcceEEEEECCCCceEeecccccee
Confidence 566678888888666 55555667999998876 677889999999999999999999999999999999
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
.+||++..- ..+.+..+.-+|..++|+- ++||+|++|..|-|=++++| ..+..++ +.++-..++|+|...
T Consensus 214 SLWD~~ELi---C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG---d~~~eI~-~~~~t~tVAWHPk~~- 285 (313)
T KOG1407|consen 214 SLWDVDELI---CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG---DRVWEIP-CEGPTFTVAWHPKRP- 285 (313)
T ss_pred eccChhHhh---hheeeccccCceEEEEeccCcceeeccCccceEEeEecccC---CeEEEee-ccCCceeEEecCCCc-
Confidence 999998554 4556667888998887765 49999999999999999998 4444444 688999999999998
Q ss_pred CCCCeEEEEEcCCC
Q 038568 337 ASNGIVSIGSGSLN 350 (357)
Q Consensus 337 ~~~~~~~l~s~~~d 350 (357)
+||-+++|
T Consensus 286 ------LLAyA~dd 293 (313)
T KOG1407|consen 286 ------LLAYACDD 293 (313)
T ss_pred ------eeeEEecC
Confidence 88777654
No 58
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.9e-34 Score=218.87 Aligned_cols=272 Identities=19% Similarity=0.336 Sum_probs=211.3
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-----cceEEEeeCC-ceEEEeccCCccc----cceeccccCCCCceEEEEEe
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-----NSLLYAASLN-EINVFDLISDYSH----VDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-----~~~l~t~~~d-~i~iw~~~~~~~~----~~~~~~~~~~~~~v~~l~~~ 81 (357)
..+++..++.+ |.++|.++++- ...|++|+.| ++++|.+ +.++. ++..+| |...|-+++..
T Consensus 132 ~~Gk~~~~~~G-----ht~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~-~~~~~~~~~~~~~~G---Hk~~V~sVsv~ 202 (423)
T KOG0313|consen 132 LKGKSIKTIVG-----HTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW-NVGENKVKALKVCRG---HKRSVDSVSVD 202 (423)
T ss_pred cCCceEEEEec-----CCcceeeeEEEecCCccceEEEecCCceEEEEEe-cCchhhhhHHhHhcc---cccceeEEEec
Confidence 36778888886 99999999886 3469999999 9999999 55443 223335 99999999999
Q ss_pred cCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEE
Q 038568 82 ITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSV 158 (357)
Q Consensus 82 ~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~ 158 (357)
+++ +++|+.|.+|++|+...... ..+......+... .........+.....+.+|..+|.++.|.+ ..++++
T Consensus 203 ~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rrk~----~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~ 277 (423)
T KOG0313|consen 203 SSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRRKK----QKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSV 277 (423)
T ss_pred CCCCeEEeecccceeeecccCCCcc-ccccccchhhhhh----hhhhhcccccCceEEecccccceeeEEEcCCCceEee
Confidence 887 99999999999999433211 1111111100000 000000111222244569999999999999 999999
Q ss_pred ecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce
Q 038568 159 SWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
+.|.+|+.||+.++..+.++ .....++++.++|.. +|++|+.|..+++||.+ .+ ........+.+|.+.|
T Consensus 278 SwDHTIk~WDletg~~~~~~--~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR------~~-~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 278 SWDHTIKVWDLETGGLKSTL--TTNKSLNCISYSPLSKLLASGSSDRHIRLWDPR------TG-DGSVVSQSLIGHKNWV 348 (423)
T ss_pred cccceEEEEEeecccceeee--ecCcceeEeecccccceeeecCCCCceeecCCC------CC-CCceeEEeeecchhhh
Confidence 99999999999999998887 567789999999977 69999999999999998 33 2344567888999999
Q ss_pred eEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCC
Q 038568 238 NALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 238 ~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~ 308 (357)
.++.|+| +...|++|+.|+++++||+++... ++..+.+|...|.++.|... +|++|+.|+.|+++.-..
T Consensus 349 ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~--plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA--PLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred hheecCCCCceEEEEEecCCeEEEEEeccCCC--cceeeccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence 9999999 556889999999999999998763 45577789999999999877 999999999999987653
No 59
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=6e-34 Score=227.22 Aligned_cols=293 Identities=16% Similarity=0.245 Sum_probs=218.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc-cccceeccccC-CCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY-SHVDTFSNDLS-SSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~-~~~~~~~~~~~-~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
|+..|.++++. |..|++|+.| .|++||+ ... ...+.|+...+ ....|.+++|++.+ |++.+.....+|+|-.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf-~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd 244 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDF-QGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD 244 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEec-ccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccC
Confidence 99999999999 9999999999 9999999 542 12222322111 35679999999976 7777778899999987
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
..+...+.+--.-+.+. ..-.+|...++|.+|+| ..+++++.||++++||++..+....
T Consensus 245 G~~~~e~~KGDQYI~Dm------------------~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 245 GFEIVEFSKGDQYIRDM------------------YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred Cceeeeeeccchhhhhh------------------hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 66554444322111111 11249999999999999 8899999999999999987553332
Q ss_pred -cc----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc--ceeEEEEecCCCEE
Q 038568 178 -VN----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS--TVNALALNGDGSLL 249 (357)
Q Consensus 178 -~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l 249 (357)
+. .+..-+++.++|++++ .|++|+.||.|.+|+.... . .......-..|.. .|+|+.|+++|++|
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~------~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSR------T-VRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCc------c-cccceEeeeccCCCCceeEEEeccccchh
Confidence 21 2344578899999999 5999999999999997521 1 1222333456766 89999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecC------CCeEEEeeCCCCcceeeeeeecCC
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSA------DRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~------dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
++-+.|+++++||++..+.......-.....+-+.+.|+|+ +|++|.. .|.+.+||..+- ..++.+.-.
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~ 456 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDIS 456 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCC
Confidence 99999999999999977653332222222334456677776 7888764 478999999874 667777777
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
...|..+.|+|.-+ .|..|+.||.+++|
T Consensus 457 ~aSvv~~~WhpkLN-------Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 457 TASVVRCLWHPKLN-------QIFAGSGDGTAHVY 484 (641)
T ss_pred CceEEEEeecchhh-------heeeecCCCceEEE
Confidence 88899999999988 88888899999886
No 60
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.7e-35 Score=222.87 Aligned_cols=269 Identities=19% Similarity=0.272 Sum_probs=219.9
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
|.+.|.|++=+ -..+|+|+.| .|+|||+ ....+..+|+. |.+.|..|++....+++++.|.+|+.|.++..
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~A---H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~- 139 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKA---HEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP- 139 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeec---ccCceeeEEecccceEEecCCcceeeeeccCC-
Confidence 99999999998 3579999999 9999999 88899999998 99999999999988999999999999998763
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
....+ .....+..+.-+. +.++|++. .|.|||.....++..+ .-
T Consensus 140 p~~ti-------------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sm-sw 185 (433)
T KOG0268|consen 140 PLHTI-------------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSM-SW 185 (433)
T ss_pred cceee-------------------------------eccccccccccccccccccccCc--eeeecccccCCcccee-ec
Confidence 11111 2234555666555 67888876 5999999988899988 56
Q ss_pred ccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 182 HEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 182 ~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
....|.++.|+|.. .|++++.|+.|.+||++ + ..++.... ....-+.++|+|.+-.+++|++|..++
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R------~----~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY 254 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLR------Q----ASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLY 254 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecc------c----CCccceee-eeccccceecCccccceeeccccccce
Confidence 66789999999977 48888899999999999 2 33333322 234457899999888899999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
.||++.... +.....+|..+|+.++|+|. -+++|+.|.+|+||.++.+.......+ ..-..|.++.|+.|.+
T Consensus 255 ~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dsk-- 328 (433)
T KOG0268|consen 255 TYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSK-- 328 (433)
T ss_pred ehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEecccc--
Confidence 999997665 56677899999999999986 999999999999999987643222221 1235699999999999
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
++++||+|+.||+|.
T Consensus 329 -----yi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 329 -----YIISGSDDGNVRLWK 343 (433)
T ss_pred -----EEEecCCCcceeeee
Confidence 999999999999993
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.3e-34 Score=239.11 Aligned_cols=264 Identities=19% Similarity=0.290 Sum_probs=202.1
Q ss_pred CCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeee--------------------eecC-cc---------ccc
Q 038568 70 SSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLV--------------------STLP-TV---------KDR 117 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~--------------------~~~~-~~---------~~~ 117 (357)
.|.+.|.++.|++|+ ||+||.|+.|+||.+...+....- .... .. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 499999999999998 999999999999998662210000 0000 00 000
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG- 195 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~- 195 (357)
......+.....+.......+.+|.+.|.++.|+. ++|++++.|.+|++|++...+|+..| .|...|+|++|+|-.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F--~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF--SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEE--ecCCeeEEEEecccCC
Confidence 00122233344455555577899999999999999 99999999999999999999999998 899999999999954
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
+|++|+-|+.||||++. .. .+........-|++++|.|||++.++|+.+|.+++|+....+.......
T Consensus 423 ryFiSGSLD~KvRiWsI~----------d~-~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSIS----------DK-KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred CcEeecccccceEEeecC----------cC-eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 79999999999999997 23 3333444558899999999999999999999999999986543222211
Q ss_pred c------cCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcC--ceEEEEEeeCCCCCCCCeEE
Q 038568 275 L------WGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEK--PVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 275 ~------~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~ 343 (357)
. ..|. .|+.+.|.+. .+++.+.|..|||+|.++. .++..++|+.. .-....|+.|++ +
T Consensus 492 ~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk-------~ 560 (712)
T KOG0283|consen 492 RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGK-------H 560 (712)
T ss_pred eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCC-------E
Confidence 1 1133 7999988753 6888899999999999765 55666665443 345678999998 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
|+++++|..|++|+
T Consensus 561 IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 561 IVSASEDSWVYIWK 574 (712)
T ss_pred EEEeecCceEEEEe
Confidence 99999999999996
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=238.48 Aligned_cols=237 Identities=29% Similarity=0.487 Sum_probs=200.6
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
+...|.++.|++++ +++++.|+.+++|+....+. .....+ .+|...|.++
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l---------------------------~~h~~~v~~~ 209 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLREL---------------------------SGHTRGVSDV 209 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccc---------------------------cccccceeee
Confidence 47899999999998 99999999999999965542 111111 2899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEc-CcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNA-SNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+|+| .++++++.|++|++||+ ..+..+.++ .+|...|++++|+|++ .+++|+.|++|++||++ ..
T Consensus 210 ~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l-~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~----------~~ 278 (456)
T KOG0266|consen 210 AFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTL-KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR----------TG 278 (456)
T ss_pred EECCCCcEEEEecCCceEEEeeccCCCeEEEEe-cCCCCceEEEEecCCCCEEEEecCCCcEEEEecc----------CC
Confidence 9999 79999999999999999 555788888 8999999999999999 69999999999999998 47
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCcc--ceEEEeecCc--eEEEecCCCe
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG--ALLCLINVGD--LLASGSADRT 300 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~~~--~l~~~~~dg~ 300 (357)
++...+.+|...|++++|++++++|++++.|+.|++||+.++... ....+.++.. ++.++.|+++ +++++..|+.
T Consensus 279 ~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 279 ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 889999999999999999999999999999999999999988732 2334444444 4888888876 9999999999
Q ss_pred EEEeeCCCCcceeeeeeecCCcCce---EEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPV---KSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++||+..+ .......+|...+ .+...++.+. ++++|+.|+.|++||
T Consensus 358 ~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 358 LKLWDLRSG---KSVGTYTGHSNLVRCIFSPTLSTGGK-------LIYSGSEDGSVYVWD 407 (456)
T ss_pred EEEEEccCC---cceeeecccCCcceeEecccccCCCC-------eEEEEeCCceEEEEe
Confidence 999999987 6667777777653 3334455666 999999999999997
No 63
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9e-32 Score=193.46 Aligned_cols=295 Identities=18% Similarity=0.211 Sum_probs=231.8
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCc-----------c-ccceeccccCCCC
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDY-----------S-HVDTFSNDLSSSG 73 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~-----------~-~~~~~~~~~~~~~ 73 (357)
.+.+.++++.+|+ ...+|.+++|. |.+.|+|+.. +.+|-.. ... + +...++....|.+
T Consensus 18 ~~k~~f~~i~~l~------dsqairav~fhp~g~lyavgsnskt~ric~y-p~l~~~r~~hea~~~pp~v~~kr~khhkg 90 (350)
T KOG0641|consen 18 KEKKHFEAINILE------DSQAIRAVAFHPAGGLYAVGSNSKTFRICAY-PALIDLRHAHEAAKQPPSVLCKRNKHHKG 90 (350)
T ss_pred ccccceEEEEEec------chhheeeEEecCCCceEEeccCCceEEEEcc-ccccCcccccccccCCCeEEeeeccccCc
Confidence 4567788899998 78899999999 9999999988 8887654 220 1 1122222334899
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
.|.|.+|+|.+ |++|+.|++|++..++.......-.. -.+.-|.+.|.+++|.
T Consensus 91 siyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~d-------------------------le~nmhdgtirdl~fl 145 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHD-------------------------LEFNMHDGTIRDLAFL 145 (350)
T ss_pred cEEEEEecCccCeEEecCCCceEEEEecccccccccCcc-------------------------eeeeecCCceeeeEEe
Confidence 99999999998 99999999999988765432111110 1223789999999997
Q ss_pred c------CeEEEEe-cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccce
Q 038568 152 Q------GLMYSVS-WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 152 ~------~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
. ..|++++ .|..|.+-|..+++....+ .+|.+.|.++---..-.+++|+.|.+|++||++. .
T Consensus 146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~-sghtghilalyswn~~m~~sgsqdktirfwdlrv----------~ 214 (350)
T KOG0641|consen 146 DDPESGGAILASAGAGDCKIYITDCGRGQGFHAL-SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRV----------N 214 (350)
T ss_pred cCCCcCceEEEecCCCcceEEEeecCCCCcceee-cCCcccEEEEEEecCcEEEccCCCceEEEEeeec----------c
Confidence 6 4566554 4778888899999999999 8999999888655555799999999999999982 2
Q ss_pred eeeeEee----c---cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe
Q 038568 225 MLVTTLV----K---HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG 295 (357)
Q Consensus 225 ~~~~~~~----~---~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~ 295 (357)
..+..+. . ..+.|.+++..|.|++|++|-.|....+||++.++ .++.+..|...|.|+.|+|. +++++
T Consensus 215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r---~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR---MIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCc---eeeeeCCCccceeEEEeCCCceEEEEe
Confidence 2333222 1 23679999999999999999999999999999887 56778889999999999998 99999
Q ss_pred cCCCeEEEeeCCCCc-ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 296 SADRTVRIWQRGKEN-CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.|..|++-|+...- ..-++.....|.+.+..+.|+|..- .+++.+.|.++.+|
T Consensus 292 syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-------sfisssadkt~tlw 346 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-------SFISSSADKTATLW 346 (350)
T ss_pred cccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc-------eeeeccCcceEEEe
Confidence 999999999987421 0123445567899999999999987 89999999999999
No 64
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=203.82 Aligned_cols=238 Identities=19% Similarity=0.351 Sum_probs=200.8
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
..+.+.. ++++|.++.|+-++ .++++.|.+|++|++..+..++...
T Consensus 9 r~~~l~~---~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs----------------------------- 56 (307)
T KOG0316|consen 9 RLSILDC---AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS----------------------------- 56 (307)
T ss_pred hceeecc---cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-----------------------------
Confidence 4455666 99999999999876 8999999999999999886655443
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
+|...|.+++.+. ..+++|+.|..+.+||+++|+.+..+ .+|...|+.+.|+.+. .+++|+.|.++++||.+
T Consensus 57 -ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCR--- 131 (307)
T KOG0316|consen 57 -GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRF-RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCR--- 131 (307)
T ss_pred -CCCceeeeccccccccccccCCCCceEEEEEcccCeeeeec-ccccceeeEEEecCcceEEEeccccceeEEEEcc---
Confidence 8889999988777 88999999999999999999999999 9999999999999888 59999999999999988
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEE
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLA 293 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 293 (357)
....++++.+......|.++..+ +..+++|+.||+++.||++.++. .....+| +|+++.++++ ..+
T Consensus 132 -----S~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l---~sDy~g~--pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 132 -----SRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTL---SSDYFGH--PITSVSFSKDGNCSL 199 (307)
T ss_pred -----cCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeeccee---ehhhcCC--cceeEEecCCCCEEE
Confidence 33567788888888899999886 56899999999999999998873 3344444 5666666655 899
Q ss_pred EecCCCeEEEeeCCCCcceeeeeeecCCcCceEE--EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKS--LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++.|+++++.|-+++ +.+...++|...=.. .++..... .+++|+.||.|.+||
T Consensus 200 a~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qsdt-------hV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQSDT-------HVFSGSEDGKVYFWD 255 (307)
T ss_pred Eeeccceeeecccchh---HHHHHhcccccceeeeeeeecccce-------eEEeccCCceEEEEE
Confidence 9999999999999998 778888899875443 34555555 899999999999997
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=239.65 Aligned_cols=248 Identities=25% Similarity=0.391 Sum_probs=218.2
Q ss_pred cccceeccc-ccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceE
Q 038568 11 AFKHHCIAS-LKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIF 86 (357)
Q Consensus 11 ~~~~~~~~~-~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 86 (357)
...++.+.. +.+ |.+.|++++|. +++|++|+.| ++++||. .+++...++.+ |...|.++...+..++
T Consensus 235 ~~~~~~i~~~l~G-----H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~-~sg~C~~~l~g---h~stv~~~~~~~~~~~ 305 (537)
T KOG0274|consen 235 LNNGYLILTRLVG-----HFGGVWGLAFPSGGDKLVSGSTDKTERVWDC-STGECTHSLQG---HTSSVRCLTIDPFLLV 305 (537)
T ss_pred cccceEEEeeccC-----CCCCceeEEEecCCCEEEEEecCCcEEeEec-CCCcEEEEecC---CCceEEEEEccCceEe
Confidence 334444444 665 99999999999 9999999999 9999999 99999999998 9999999999999999
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKI 166 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 166 (357)
+|+.|.+|++|++.++..+..+. +|..+|.++..+..++++|+.|++|++
T Consensus 306 sgs~D~tVkVW~v~n~~~l~l~~------------------------------~h~~~V~~v~~~~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 306 SGSRDNTVKVWDVTNGACLNLLR------------------------------GHTGPVNCVQLDEPLLVSGSYDGTVKV 355 (537)
T ss_pred eccCCceEEEEeccCcceEEEec------------------------------cccccEEEEEecCCEEEEEecCceEEE
Confidence 99999999999999886554443 699999999999999999999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccce-eeeeEeeccccceeEEEEecC
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRH-MLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~ 245 (357)
||+.+++++..+ .+|...|.++.+.+..++++|+.|+.|++||++ .. +++..+.+|..-+..+.+ .
T Consensus 356 W~~~~~~cl~sl-~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~----------~~~~c~~tl~~h~~~v~~l~~--~ 422 (537)
T KOG0274|consen 356 WDPRTGKCLKSL-SGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLR----------TKRKCIHTLQGHTSLVSSLLL--R 422 (537)
T ss_pred EEhhhceeeeee-cCCcceEEEEEecCcceEEeeeeccceEeecCC----------chhhhhhhhcCCccccccccc--c
Confidence 999999999999 889999999988876689999999999999998 33 788889999998877765 4
Q ss_pred CCEEEEEecCCeEEEEecccCCceeeeeeccC-CccceEEEeecCceEEEecCCCeEEEeeCCCCccee
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGDLLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
+++|++++.|++|++||..+++.. ..+.+ |...+.++.+....+++++.||.+++||+++++..+
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~---~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECL---RTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cceeEeccccccEEEeecccCcee---eeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 679999999999999999998854 44445 678899888886799999999999999999985443
No 66
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.6e-34 Score=239.03 Aligned_cols=242 Identities=17% Similarity=0.266 Sum_probs=184.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC----------------------------------------------
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD---------------------------------------------- 58 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~---------------------------------------------- 58 (357)
|.++|+++.|+ |+|||+||.| .|+||.+.+.
T Consensus 266 h~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s 345 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQS 345 (712)
T ss_pred cCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCC
Confidence 99999999999 9999999999 9999998440
Q ss_pred -------------ccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecC
Q 038568 59 -------------YSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLP 124 (357)
Q Consensus 59 -------------~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (357)
.++++.|. +|.+.|.+|.|+.++ |++++.|.+|++|++...+++..+
T Consensus 346 ~~~~~p~~~f~f~ekP~~ef~---GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F---------------- 406 (712)
T KOG0283|consen 346 PCVLLPLKAFVFSEKPFCEFK---GHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVF---------------- 406 (712)
T ss_pred ccccCCCccccccccchhhhh---ccchhheecccccCCeeEeccccccEEeecCCCcceeeEE----------------
Confidence 11233444 499999999999888 999999999999999977655554
Q ss_pred CCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEE
Q 038568 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTG 200 (357)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~ 200 (357)
.|.+-|+|++|+| +++++|+-||.|+||++...+.+.- .....-|++++|.|+|. .++|
T Consensus 407 ---------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W--~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 407 ---------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW--NDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred ---------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee--hhhhhhheeEEeccCCceEEEE
Confidence 7999999999999 9999999999999999977665543 35558899999999994 8999
Q ss_pred eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCc
Q 038568 201 SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT 279 (357)
Q Consensus 201 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 279 (357)
+.+|.+++|+....+......-.....+. ..|. .|+.+.|.| +...+++.+.|..|||||.++...+..++.+..-.
T Consensus 470 t~~G~C~fY~t~~lk~~~~~~I~~~~~Kk-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVSDFHIRLHNKKK-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EeccEEEEEEccCCeEEEeeeEeeccCcc-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 99999999998732211111000000011 1133 799999998 34468888899999999998766443333332222
Q ss_pred cce-EEEeecCceEEEecCCCeEEEeeCC
Q 038568 280 GAL-LCLINVGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 280 ~~v-~~~~~~~~~l~~~~~dg~i~vw~~~ 307 (357)
..+ .++..++++|+++++|..|++|+..
T Consensus 548 SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 223 3344567799999999999999973
No 67
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=5.4e-33 Score=217.20 Aligned_cols=273 Identities=18% Similarity=0.275 Sum_probs=230.6
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccc
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~ 104 (357)
..|+++... .+.++||+.| .+.++|. ...+.+..|.| |...|+.+.|+|+. +++++.|..|+||.......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~-~s~q~l~~~~G---h~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~ 295 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDK-PSNQILATLKG---HTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE 295 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEec-chhhhhhhccC---cceEEEEEEeccchhheeecCCcceEEeeccccccC
Confidence 357777776 4899999999 9999999 99999999999 99999999999987 99999999999999876653
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc-
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA- 181 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 181 (357)
..... .|..+|+.+..+| .||++++.||+..+.|++++..+......
T Consensus 296 ~~~~~------------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 296 PTSSR------------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred ccccc------------------------------cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecc
Confidence 33222 8899999999999 99999999999999999999988877332
Q ss_pred ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 182 HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
..-.+++.+|+|||. |.+|..|+.|++||+. .......+.+|.++|..++|+.+|-+|++++.|+.|++
T Consensus 346 s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk----------s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~l 415 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK----------SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKL 415 (506)
T ss_pred ccceeEEeeEcCCceEEeccCCCceEEEEEcC----------CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEE
Confidence 345689999999995 8899999999999998 44567889999999999999999999999999999999
Q ss_pred EecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCC
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSAS 338 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 338 (357)
||++..+....+.... ...+.++.|+ +.+|+.++.|=.|++++-.+. .+..+..+..|.+..+++.|.....
T Consensus 416 wDLRKl~n~kt~~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq--- 489 (506)
T KOG0289|consen 416 WDLRKLKNFKTIQLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQ--- 489 (506)
T ss_pred EEehhhcccceeeccc--cccceeEEEcCCCCeEEeecceeEEEEEecccc-cceeeehhhhcccccceeeecccce---
Confidence 9999877554443322 2256555554 569999988877777765543 4788888999999999999999988
Q ss_pred CCeEEEEEcCCCCeEEec
Q 038568 339 NGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 339 ~~~~~l~s~~~dg~v~~w 356 (357)
+++++|.|..++++
T Consensus 490 ----~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 490 ----YLASTSMDAILRLY 503 (506)
T ss_pred ----EEeeccchhheEEe
Confidence 99999999998886
No 68
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5e-35 Score=231.42 Aligned_cols=248 Identities=19% Similarity=0.315 Sum_probs=214.7
Q ss_pred ccccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKK 135 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (357)
.+.+.++.+ |...|+++.|.|. . |++++.|+.|+||++.... .++++
T Consensus 204 kk~~~~~~g---H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--~~lrt------------------------- 253 (503)
T KOG0282|consen 204 KKLSHNLSG---HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--RCLRT------------------------- 253 (503)
T ss_pred HhheeeccC---CccccchhhhccceeeEEEecCCCceEEEEEEecCc--ceehh-------------------------
Confidence 456777887 9999999999994 3 9999999999999998733 33433
Q ss_pred cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEc
Q 038568 136 RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWER 211 (357)
Q Consensus 136 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~ 211 (357)
+.+|..+|.+++|++ ..+++++.|+.|++||+++|+++..+ .....++|+.++|++ .+++|+.|+.|+.||+
T Consensus 254 --f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 254 --FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred --hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 349999999999999 89999999999999999999999998 566788999999998 5999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCce
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDL 291 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 291 (357)
+ ..+.++++..|-+.|..+.|-++|+.+++.+.|+.++||+.+.+-.+..+.....|..+...+.+.+.+
T Consensus 330 R----------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 330 R----------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred c----------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 9 566788888899999999999999999999999999999999887666666666677777777777789
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcC--ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEK--PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++-+.|+.|.++.+...-.......+.+|.. --..+.|+||++ +|++|+.||.+.+||
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-------~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-------TLCSGDSDGKVNFWD 460 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC-------eEEeecCCccEEEee
Confidence 99999999999999876544455566778864 356789999999 999999999999997
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=9e-35 Score=211.57 Aligned_cols=244 Identities=18% Similarity=0.311 Sum_probs=209.5
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
+.=+-+|.+ |+++|+....+ ....|+++.| +-+|||. -++..++.|+ |..-|.+++|+.|. |++|
T Consensus 49 gdwigtfeg-----hkgavw~~~l~~na~~aasaaadftakvw~a-~tgdelhsf~----hkhivk~~af~~ds~~lltg 118 (334)
T KOG0278|consen 49 GDWIGTFEG-----HKGAVWSATLNKNATRAASAAADFTAKVWDA-VTGDELHSFE----HKHIVKAVAFSQDSNYLLTG 118 (334)
T ss_pred CCcEEeeec-----cCcceeeeecCchhhhhhhhcccchhhhhhh-hhhhhhhhhh----hhheeeeEEecccchhhhcc
Confidence 334556665 99999999998 5677888999 9999999 9999999998 99999999999876 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.+..++|||++..+.. ... +.+|.+.|..+.|.. +.+++.+.|++|++
T Consensus 119 g~ekllrvfdln~p~Ap--p~E---------------------------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRL 169 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPKAP--PKE---------------------------ISGHTGGIRTVLWCHEDKCILSSADDKTVRL 169 (334)
T ss_pred chHHHhhhhhccCCCCC--chh---------------------------hcCCCCcceeEEEeccCceEEeeccCCceEE
Confidence 99999999999876532 222 238999999999988 88999999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG 246 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 246 (357)
||.+++..++++ ..+.+|+++.++++|.+++-...+.|.+||.. ...++..+. ....|.+.+.+|+.
T Consensus 170 WD~rTgt~v~sL--~~~s~VtSlEvs~dG~ilTia~gssV~Fwdak----------sf~~lKs~k-~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 170 WDHRTGTEVQSL--EFNSPVTSLEVSQDGRILTIAYGSSVKFWDAK----------SFGLLKSYK-MPCNVESASLHPKK 236 (334)
T ss_pred EEeccCcEEEEE--ecCCCCcceeeccCCCEEEEecCceeEEeccc----------cccceeecc-CccccccccccCCC
Confidence 999999999998 67789999999999999999999999999987 333444433 34568899999999
Q ss_pred CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc
Q 038568 247 SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 247 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~ 311 (357)
..+++|++|..++.||..++..+... ..+|.++|.|+.|+|+ ..++|+.||+|++|....++.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999865432 4789999999999988 889999999999999987643
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.1e-32 Score=252.27 Aligned_cols=264 Identities=18% Similarity=0.266 Sum_probs=205.2
Q ss_pred ceEEEeccCCccccceecc--ccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecC
Q 038568 49 EINVFDLISDYSHVDTFSN--DLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLP 124 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (357)
.+++|+. ........+.. ...|...|.+++|+|++ |++|+.|+.|++|++............+
T Consensus 459 l~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~------------ 525 (793)
T PLN00181 459 LCKYLSF-SKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP------------ 525 (793)
T ss_pred hhhhhcc-cceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc------------
Confidence 5777777 54443322221 11289999999999987 9999999999999976421100000000
Q ss_pred CCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec-CC-eEEE
Q 038568 125 NNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NG-VVYT 199 (357)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~ 199 (357)
.....+...+.+++|++ .+|++++.||+|++||+.+++.+..+ ..|...|.+++|+| ++ +|++
T Consensus 526 -----------~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~-~~H~~~V~~l~~~p~~~~~L~S 593 (793)
T PLN00181 526 -----------VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM-KEHEKRVWSIDYSSADPTLLAS 593 (793)
T ss_pred -----------eEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe-cCCCCCEEEEEEcCCCCCEEEE
Confidence 00013346789999987 78999999999999999998888888 78999999999997 55 6999
Q ss_pred EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCC
Q 038568 200 GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH 278 (357)
Q Consensus 200 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 278 (357)
|+.|+.|++||++ ....+..+.. ...+.++.|++ ++.+|++|+.||.|++||+++... ....+.+|
T Consensus 594 gs~Dg~v~iWd~~----------~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~--~~~~~~~h 660 (793)
T PLN00181 594 GSDDGSVKLWSIN----------QGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL--PLCTMIGH 660 (793)
T ss_pred EcCCCEEEEEECC----------CCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc--cceEecCC
Confidence 9999999999997 2334444543 36789999964 789999999999999999987653 23455689
Q ss_pred ccceEEEeecC-ceEEEecCCCeEEEeeCCCCc---ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 279 TGALLCLINVG-DLLASGSADRTVRIWQRGKEN---CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 279 ~~~v~~~~~~~-~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
...|.++.|.+ .+|++++.|+.|++||++.+. ...++..+.+|...+..++|+|++. +|++|+.||.|+
T Consensus 661 ~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-------~lasgs~D~~v~ 733 (793)
T PLN00181 661 SKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-------YIATGSETNEVF 733 (793)
T ss_pred CCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-------EEEEEeCCCEEE
Confidence 99999999864 499999999999999997532 2356778899999999999999998 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+|+
T Consensus 734 iw~ 736 (793)
T PLN00181 734 VYH 736 (793)
T ss_pred EEE
Confidence 996
No 71
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-33 Score=210.23 Aligned_cols=317 Identities=19% Similarity=0.266 Sum_probs=236.7
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
..++++.+.+ |++.|+.++.. ...+.+++.| +.+||.+ +++.++..+.+ |.+.|+++.|++.+ +++
T Consensus 137 ~~~lvre~~G-----HkDGiW~Vaa~~tqpi~gtASADhTA~iWs~-Esg~CL~~Y~G---H~GSVNsikfh~s~~L~lT 207 (481)
T KOG0300|consen 137 KFRLVRELEG-----HKDGIWHVAADSTQPICGTASADHTARIWSL-ESGACLATYTG---HTGSVNSIKFHNSGLLLLT 207 (481)
T ss_pred eEeehhhhcc-----cccceeeehhhcCCcceeecccccceeEEee-ccccceeeecc---cccceeeEEeccccceEEE
Confidence 4555666664 99999999988 6789999999 9999999 99999999999 99999999999987 889
Q ss_pred eecCCeEEEEecC----Cccce--eeeeecCccccceeeeecCCCeEEEecc----cccccccccccEEEEEEec--CeE
Q 038568 88 AHQDCKIRVWKIT----ASRQH--QLVSTLPTVKDRLIRSVLPNNYVTVRRH----KKRLWLEHWDAVSDLVVKQ--GLM 155 (357)
Q Consensus 88 ~~~d~~i~vwd~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~--~~l 155 (357)
++.|++..||... .++.. ............-......+......++ +...+.+|...|.+..|.. +.+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM 287 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence 9999999999832 11100 0000000000000000000000001111 1133468999999999988 899
Q ss_pred EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 156 YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
++++.|.+..+||+++++.+..+ .+|....+.++-+|..+ +++.+.|.+.++||++ .....+..+++|.
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR---------eaI~sV~VFQGHt 357 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR---------EAIQSVAVFQGHT 357 (481)
T ss_pred eeeeccccceeeeeccCceeccc-cCcchhccccccCCcceEEEEeccCceeEeccch---------hhcceeeeecccc
Confidence 99999999999999999999999 89999999999999885 7889999999999998 3455678899999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcce
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCY 312 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~ 312 (357)
..|+++.|..+. .+++|+.|.+|+|||+++.+... .++. -..++..++.+ ...|+.--++..|++||++.....
T Consensus 358 dtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRspl--ATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 358 DTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPL--ATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred cceeEEEEecCC-ceeecCCCceEEEeeeccccCcc--eeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 999999998764 58999999999999999776532 2222 23445555444 448888889999999999865322
Q ss_pred ee-eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RC-MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+. ...-++|...|+|++|..+.+. .-|+++|.|..+.-|+
T Consensus 434 RlPrtsRqgHrRMV~c~AW~eehp~-----cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 434 RLPRTSRQGHRRMVTCCAWLEEHPA-----CNLFTCGFDRMVAGWK 474 (481)
T ss_pred cCCcccccccceeeeeeeccccCcc-----cccccccccceeeeeE
Confidence 21 1245689999999999876541 1488999999998874
No 72
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=226.41 Aligned_cols=273 Identities=23% Similarity=0.389 Sum_probs=229.8
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccc--eeccccCCCCceEE-EEEec-Cc-
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVD--TFSNDLSSSGSVKS-ITFHI-TK- 84 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~--~~~~~~~~~~~v~~-l~~~~-~~- 84 (357)
+.++..+.+.+ |+..|..+++. +..++++|.| ++++|+- ...+.+. .+.+ |.+-|.. ++|.+ ++
T Consensus 2 ~~Y~ls~~l~g-----H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~-~~~~~l~~~~~~~---~~g~i~~~i~y~e~~~~ 72 (745)
T KOG0301|consen 2 PQYKLSHELEG-----HKSDVRAVAVTDGVCIISGSRDGTVKVWAK-KGKQYLETHAFEG---PKGFIANSICYAESDKG 72 (745)
T ss_pred CcceeEEEecc-----CccchheeEecCCeEEeecCCCCceeeeec-cCcccccceeccc---CcceeeccceeccccCc
Confidence 34667778886 99999999998 7889999999 9999998 5544443 4555 7777766 88875 32
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDR 162 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg 162 (357)
+++|+.|.++.+|.+.+......+ .+|...|.++.... ..+++||.|.
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~~L------------------------------kgH~snVC~ls~~~~~~~iSgSWD~ 122 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLYTL------------------------------KGHKSNVCSLSIGEDGTLISGSWDS 122 (745)
T ss_pred ceEeecccceEEEEecCCCCchhhh------------------------------hccccceeeeecCCcCceEeccccc
Confidence 999999999999999887655443 39999999999777 6799999999
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
++++|-. +++...+ .+|...|.++...|++.+++|+.|.+|++|.- .+.+..+.+|...|..+++
T Consensus 123 TakvW~~--~~l~~~l-~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~------------~~~l~tf~gHtD~VRgL~v 187 (745)
T KOG0301|consen 123 TAKVWRI--GELVYSL-QGHTASVWAVASLPENTYVTGSADKTIKLWKG------------GTLLKTFSGHTDCVRGLAV 187 (745)
T ss_pred ceEEecc--hhhhccc-CCcchheeeeeecCCCcEEeccCcceeeeccC------------CchhhhhccchhheeeeEE
Confidence 9999975 5666677 89999999999999999999999999999984 4678889999999999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecC
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEG 320 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 320 (357)
-+++ .+++++.||.|+.|++. ++ .+....+|...+.+++.. ...++++++|+++++|+.. .+.+.+.-
T Consensus 188 l~~~-~flScsNDg~Ir~w~~~-ge---~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q~I~l 257 (745)
T KOG0301|consen 188 LDDS-HFLSCSNDGSIRLWDLD-GE---VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQVITL 257 (745)
T ss_pred ecCC-CeEeecCCceEEEEecc-Cc---eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEEEEec
Confidence 9875 58899999999999994 55 556778999999988843 3399999999999999987 45666665
Q ss_pred CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 321 h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
....|+++.+-+++. +++|+.||.||||
T Consensus 258 PttsiWsa~~L~NgD--------Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 258 PTTSIWSAKVLLNGD--------IVVGGSDGRVRVF 285 (745)
T ss_pred CccceEEEEEeeCCC--------EEEeccCceEEEE
Confidence 666899999999996 8889999999998
No 73
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=203.70 Aligned_cols=259 Identities=17% Similarity=0.207 Sum_probs=203.7
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccc-eeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVD-TFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~ 100 (357)
-.+.|.+|+|| ..+++++|.| +||+|++.+++..+- ... .|.++|.+++|+.++ +++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~---~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ---SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh---ccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 77899999999 6777789999 999999944344433 233 399999999999987 9999999999999999
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
+++... +. .|..+|..+.|-+ ..|++||.|.+|+.||.+...++.
T Consensus 103 S~Q~~~-v~------------------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 103 SGQVSQ-VA------------------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred CCCeee-ee------------------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence 985432 22 8999999999998 478999999999999999988888
Q ss_pred hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC
Q 038568 177 SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
++ .....+.++..-.. .++++..++.|.+|+++.... +.........-.+.|++..++....+.|+-+|
T Consensus 152 t~--~LPeRvYa~Dv~~p-m~vVata~r~i~vynL~n~~t--------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 152 TL--QLPERVYAADVLYP-MAVVATAERHIAVYNLENPPT--------EFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ee--eccceeeehhccCc-eeEEEecCCcEEEEEcCCCcc--------hhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 87 55667777665322 588888999999999972111 11111112344578999989888889999999
Q ss_pred eEEEEecccCCceeeeeeccCCc---------cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCce
Q 038568 257 WIVVWERERDHRMVFAEALWGHT---------GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPV 325 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v 325 (357)
.+.|..++.+.+ ..-..++.|. .+|..++|+|. .|+++|.||+..+||-... ..+.....|..+|
T Consensus 221 rv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 221 RVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred eEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 999999987533 2223344444 35678899987 8999999999999998765 5567778899999
Q ss_pred EEEEEeeCCC
Q 038568 326 KSLVAISSSS 335 (357)
Q Consensus 326 ~~~~~~~~~~ 335 (357)
++.+|+.+|.
T Consensus 297 tcc~fn~~G~ 306 (347)
T KOG0647|consen 297 TCCSFNRNGS 306 (347)
T ss_pred ceeEecCCCC
Confidence 9999999998
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=216.78 Aligned_cols=269 Identities=23% Similarity=0.341 Sum_probs=222.8
Q ss_pred CccceeEEEEe---cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH---NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-.+.|.+++|+ ..-+|+.+.-.+.||+. .+....+++.. ....|.++.|..|+ |++|...|.|+|+|+.+.
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~-~~~~~~k~~sr---Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSS-VTRSVRKTFSR---FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEec-chhhhhhhHHh---hccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 45789999999 45666666558999999 88888888877 88999999999988 888888999999996653
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 179 (357)
..... +.+|+.++..+.|+| ..+++|+.|+.+++||+.+......+
T Consensus 101 ~iLR~------------------------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l- 149 (487)
T KOG0310|consen 101 VILRQ------------------------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL- 149 (487)
T ss_pred HHHHH------------------------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe-
Confidence 22222 238999999999999 78899999999999999998875566
Q ss_pred ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 180 KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.+|.+.|.|.+++|.. .+++|+.||.|++||.+. ....+.++ .|..+|..+.+-|.|..+++++. +.
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~---------~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~ 218 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS---------LTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NS 218 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEecc---------CCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-Ce
Confidence 8999999999999976 599999999999999981 11344444 48999999999999999998875 46
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|+|||+.++.+ .......|...|+|+.+..+ .|++|+-|+.+++||+.+ ++.+..+. -.++|.+++.+|++.
T Consensus 219 vkVWDl~~G~q--ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~~-~~~pvLsiavs~dd~ 292 (487)
T KOG0310|consen 219 VKVWDLTTGGQ--LLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSWK-YPGPVLSIAVSPDDQ 292 (487)
T ss_pred EEEEEecCCce--ehhhhhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEeee-cccceeeEEecCCCc
Confidence 99999997765 33444559999999999874 999999999999999776 46666665 468999999999988
Q ss_pred CCCCCeEEEEEcCCCCeEEe
Q 038568 336 SASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~ 355 (357)
.++.|..||.+.+
T Consensus 293 -------t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 293 -------TVVIGMSNGLVSI 305 (487)
T ss_pred -------eEEEecccceeee
Confidence 8999999997743
No 75
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.2e-31 Score=218.68 Aligned_cols=238 Identities=28% Similarity=0.503 Sum_probs=201.3
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
+++.+ |..+|++++|+|++ |++++.||.+++|++.+++...... .
T Consensus 3 ~~~~~---h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~------------------------------~ 49 (289)
T cd00200 3 RTLKG---HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK------------------------------G 49 (289)
T ss_pred hHhcc---cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe------------------------------c
Confidence 45566 99999999999975 8899999999999998775332222 6
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccc
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
|...+..+.|.+ +.+++++.||.|++||+.+++.+..+ ..+...+.++.|++++. +++++.++.+++||++
T Consensus 50 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~----- 123 (289)
T cd00200 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE----- 123 (289)
T ss_pred CCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-----
Confidence 778889999999 58999999999999999988777777 67888999999999875 6666669999999997
Q ss_pred cccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe
Q 038568 218 KERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG 295 (357)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~ 295 (357)
.......+..|...+.+++|+|++.++++++.|+.|++||+++++. ...+..|...+.++.++++ .++++
T Consensus 124 -----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~ 195 (289)
T cd00200 124 -----TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC---VATLTGHTGEVNSVAFSPDGEKLLSS 195 (289)
T ss_pred -----CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc---ceeEecCccccceEEECCCcCEEEEe
Confidence 3455666668889999999999988999888899999999987664 3344578888999999887 88999
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|+.|++||++++ +.+..+..|..++.++.|+|++. ++++++.||.|++||
T Consensus 196 ~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~i~i~~ 247 (289)
T cd00200 196 SSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGY-------LLASGSEDGTIRVWD 247 (289)
T ss_pred cCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCc-------EEEEEcCCCcEEEEE
Confidence 99999999999986 55666778888999999999977 888888899999996
No 76
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=3.5e-31 Score=226.11 Aligned_cols=259 Identities=15% Similarity=0.251 Sum_probs=189.0
Q ss_pred EEEecceEEE------eeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC-c--eEEeecCCeEEEEecCCccc
Q 038568 35 LAVHNSLLYA------ASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-K--IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 35 ~~~s~~~l~t------~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~--l~~~~~d~~i~vwd~~~~~~ 104 (357)
++.+++++|. |+.+ .|++|+. .....+..+.+ |.++|.+++|+|+ . |++|+.|++|++||+.++..
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~-~r~~~v~~L~g---H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~ 109 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQ-MRKPPVIKLKG---HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE 109 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeec-CCCceEEEEcC---CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 3444555553 4456 8999998 66677778887 9999999999986 3 99999999999999976432
Q ss_pred -eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 105 -HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 105 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
...+.. ....+.+|...|.+++|+| ..+++++.|++|++||+++++.+..+
T Consensus 110 ~~~~i~~-----------------------p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i-- 164 (568)
T PTZ00420 110 SVKEIKD-----------------------PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI-- 164 (568)
T ss_pred ccccccc-----------------------ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--
Confidence 110000 0012238899999999999 35679999999999999998877666
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE-----EEEecCCCEEEEEec
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA-----LALNGDGSLLFSGGC 254 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~ 254 (357)
.+...|.+++|+|+| .|++++.|+.|++||++ ....+..+.+|.+.+.. ..|++++.+|++++.
T Consensus 165 ~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R----------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~ 234 (568)
T PTZ00420 165 NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR----------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGF 234 (568)
T ss_pred ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC----------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEc
Confidence 356789999999999 57888899999999998 44556677888876543 334588889999887
Q ss_pred CC----eEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 255 DR----WIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 255 dg----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
|+ +|++||++..........+..+.+.+..+... +.++++|+.|+.|++|++..+. ...+.... +..++.++
T Consensus 235 d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~ 312 (568)
T PTZ00420 235 SKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK-SCSPFRSF 312 (568)
T ss_pred CCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc-cCCCccce
Confidence 74 79999999644332333333344443333222 3388999999999999998763 33344333 67889999
Q ss_pred EEeeCC
Q 038568 329 VAISSS 334 (357)
Q Consensus 329 ~~~~~~ 334 (357)
+|.|..
T Consensus 313 ~f~Pkr 318 (568)
T PTZ00420 313 GFLPKQ 318 (568)
T ss_pred EEcccc
Confidence 999975
No 77
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-31 Score=200.23 Aligned_cols=264 Identities=18% Similarity=0.224 Sum_probs=210.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~ 103 (357)
-.+.|+++.|+ ++.|++++.| .+++||. ........+. |..++.+++|.++. +++|+.||.|+.+|++++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv-~~~~l~~~~~----~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDV-PANSLKLKFK----HGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEec-cchhhhhhee----cCCceeeeeccCCceEEEeccCceEEEEEecCCc
Confidence 56789999999 7778888899 9999999 7777777777 99999999999976 9999999999999999876
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
.... ..|..+|.|+.+.+ +.+++|+.|++|++||.+.......+ .
T Consensus 87 ~~~i-------------------------------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--d 133 (323)
T KOG1036|consen 87 EDQI-------------------------------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF--D 133 (323)
T ss_pred ceee-------------------------------ccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc--c
Confidence 4322 27899999999998 99999999999999999986666665 4
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 182 HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
....|.++....+ .|++|+.+..+.+||++..+... ...-...+-.+.++++.|++.-.++++-||+|.+=
T Consensus 134 ~~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~--------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 134 QGKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPF--------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred cCceEEEEeccCC-EEEEeecCceEEEEEcccccchh--------hhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 4558888887543 79999999999999999433211 11122334568899999988889999999999886
Q ss_pred ecccCCc-eeeeeeccCCc---------cceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 262 ERERDHR-MVFAEALWGHT---------GALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 262 d~~~~~~-~~~~~~~~~~~---------~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
.++.... ......+..|. .+|.+++|+|- .|+||+.||.|.+||+.+. +.+..+..-...|.+++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 6654411 11122333443 36889999987 8999999999999999987 44555666677899999
Q ss_pred EeeCCCCCCCCeEEEEEcC
Q 038568 330 AISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~ 348 (357)
|+.++. .||.++
T Consensus 282 fs~dG~-------~LAia~ 293 (323)
T KOG1036|consen 282 FSMDGS-------LLAIAS 293 (323)
T ss_pred eccCCC-------eEEEEe
Confidence 999998 888876
No 78
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.7e-32 Score=215.59 Aligned_cols=253 Identities=23% Similarity=0.317 Sum_probs=205.2
Q ss_pred cceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCc-c---------ccceeccccCCCCceEEE
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDY-S---------HVDTFSNDLSSSGSVKSI 78 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~-~---------~~~~~~~~~~~~~~v~~l 78 (357)
..+..+.+. |.+.|+.+.+- ...+|+++.. .|.|||. ... . +-..+.+ |...-++|
T Consensus 114 ~v~i~~~i~------h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~-tk~~s~~~~~~~~~Pdl~L~g---H~~eg~gl 183 (422)
T KOG0264|consen 114 KVEISQKIN------HDGEVNRARYMPQNPNIVATKTSSGDVYVFDY-TKHPSKPKASGECRPDLRLKG---HEKEGYGL 183 (422)
T ss_pred ceEEEEecc------CCccchhhhhCCCCCcEEEecCCCCCEEEEEe-ccCCCcccccccCCCceEEEe---eccccccc
Confidence 445555666 99999999998 6788888888 9999998 331 1 1225666 88888889
Q ss_pred EEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---
Q 038568 79 TFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--- 152 (357)
Q Consensus 79 ~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 152 (357)
+|++.. |++++.|++|++||+.......... ....++.+|...|.+++|++
T Consensus 184 sWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~-----------------------~p~~~~~~h~~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 184 SWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV-----------------------DPKTIFSGHEDVVEDVAWHPLHE 240 (422)
T ss_pred ccccccceeEeeccCCCcEEEEeccccccCCccc-----------------------cceEEeecCCcceehhhccccch
Confidence 999864 9999999999999998654321100 01134459999999999999
Q ss_pred CeEEEEecCCeEEEEEcC--cchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVSWDRSFKIWNAS--NYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
+++++++.|+.+.|||++ +.++.... .+|...++|++|+|-+ .||+|+.|++|++||+|. ...++.
T Consensus 241 ~lF~sv~dd~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn---------L~~~lh 310 (422)
T KOG0264|consen 241 DLFGSVGDDGKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN---------LNKPLH 310 (422)
T ss_pred hhheeecCCCeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCceEEeccCCCcEEEeechh---------cccCce
Confidence 899999999999999999 45555555 8899999999999966 599999999999999992 345788
Q ss_pred EeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCC-----------ceeeeeeccCCccceEEEeecCc---eEE
Q 038568 229 TLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDH-----------RMVFAEALWGHTGALLCLINVGD---LLA 293 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~---~l~ 293 (357)
.+.+|...|.++.|+| ....|++++.|+.+.|||+..-. ++.++....||...|..++|+|. .|+
T Consensus 311 ~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~ 390 (422)
T KOG0264|consen 311 TFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIA 390 (422)
T ss_pred eccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEE
Confidence 9999999999999999 45689999999999999996422 23345567799999999999988 899
Q ss_pred EecCCCeEEEeeCCC
Q 038568 294 SGSADRTVRIWQRGK 308 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~ 308 (357)
+.+.|+.+.||+...
T Consensus 391 SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 391 SVAEDNILQIWQMAE 405 (422)
T ss_pred EecCCceEEEeeccc
Confidence 999999999999873
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=200.81 Aligned_cols=265 Identities=18% Similarity=0.297 Sum_probs=202.9
Q ss_pred cccccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--- 84 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--- 84 (357)
+..++...+-.+.. |.++|++++.++.++|+||.| +|+|||. .....+..+.. |.+.|+++.|.+..
T Consensus 28 s~~~~l~~lF~~~a-----H~~sitavAVs~~~~aSGssDetI~IYDm-~k~~qlg~ll~---HagsitaL~F~~~~S~s 98 (362)
T KOG0294|consen 28 SVKPTLKPLFAFSA-----HAGSITALAVSGPYVASGSSDETIHIYDM-RKRKQLGILLS---HAGSITALKFYPPLSKS 98 (362)
T ss_pred ccceeeeccccccc-----cccceeEEEecceeEeccCCCCcEEEEec-cchhhhcceec---cccceEEEEecCCcchh
Confidence 34444455555555 999999999999999999999 9999999 88888888887 99999999999764
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
|++|+.||.|.+|+...-.....++ +|.+.|+.++.+| ++.++.+.|
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK------------------------------~H~~~Vt~lsiHPS~KLALsVg~D 148 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLK------------------------------AHKGQVTDLSIHPSGKLALSVGGD 148 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeec------------------------------ccccccceeEecCCCceEEEEcCC
Confidence 9999999999999998765444333 8999999999999 777889999
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNAL 240 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 240 (357)
+.++.||+-+|+.-......+ .-+.+.|+|.| +++.+.. ..|-+|.+.. ......+. ....+.++
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~----------A~v~~~i~-~~~r~l~~ 214 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGR-NKIDIYQLDN----------ASVFREIE-NPKRILCA 214 (362)
T ss_pred ceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEec-cEEEEEeccc----------HhHhhhhh-ccccceee
Confidence 999999999888665552233 33449999999 4666655 4788998861 11221111 22345666
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCC--cceee
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKE--NCYRC 314 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~--~~~~~ 314 (357)
.|. ++..|++|..|+.|.+||.++.. +...+.+|...|-.+.+-.+ +|+++++||.|++||++.. +....
T Consensus 215 ~~l-~~~~L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~ 290 (362)
T KOG0294|consen 215 TFL-DGSELLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTL 290 (362)
T ss_pred eec-CCceEEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcce
Confidence 665 56789999999999999999755 55677789999998885433 9999999999999999764 22344
Q ss_pred eeeecCCcCceEEEEEe
Q 038568 315 MAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 315 ~~~~~~h~~~v~~~~~~ 331 (357)
+..... ...++|+...
T Consensus 291 l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 291 LAELNT-NVRLTCLRVK 306 (362)
T ss_pred eEEeec-CCccceeeeh
Confidence 555443 5567777653
No 80
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-32 Score=199.31 Aligned_cols=243 Identities=21% Similarity=0.322 Sum_probs=197.3
Q ss_pred CCCceEEEE--EecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSIT--FHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~--~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|+..|.++. |...+|+|++.|++|+|+.++.......+.++. +|.++|..+
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~---------------------------Gh~GPVwqv 62 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT---------------------------GHSGPVWKV 62 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec---------------------------CCCCCeeEE
Confidence 788887655 445569999999999999998877645554443 999999999
Q ss_pred EEec----CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecCC---eEEEEeCCCeEEEEEccccccccc
Q 038568 149 VVKQ----GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 149 ~~~~----~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
+|.. .+|++++.||.|.||.-.+++ ..... ..|...|++++|.|.+ .|++++.||.|.+.+.+.
T Consensus 63 ~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~-~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~------ 135 (299)
T KOG1332|consen 63 AWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH-AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDS------ 135 (299)
T ss_pred eecccccCcEeeEeecCceEEEEecCCCchhhhhhh-hhhcccceeecccccccceEEEEeeCCCcEEEEEEcC------
Confidence 9976 899999999999999988774 33444 6799999999999987 399999999999999872
Q ss_pred cccceeeeeEeeccccceeEEEEecC---C-----------CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGD---G-----------SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL 285 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 285 (357)
. ...........|.-.|++++|.|. | +.|++|+.|+.|+||+...+ ....-..+.+|...|+.+
T Consensus 136 ~-g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 136 S-GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDV 213 (299)
T ss_pred C-CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhh
Confidence 1 122333445679999999999984 4 56999999999999999986 333445688999999999
Q ss_pred eecCc------eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 286 INVGD------LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 286 ~~~~~------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+|.|. +||+++.||++.||..+.....-....+......+..+.|+..++ +|+.++.|+.|.+|
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-------~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-------ILAVSGGDNKVTLW 283 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-------EEEEecCCcEEEEE
Confidence 99876 899999999999998874322222334445678899999999998 99999999999998
No 81
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=9.2e-31 Score=222.57 Aligned_cols=257 Identities=19% Similarity=0.253 Sum_probs=186.2
Q ss_pred EecceEEEeeCC-ceEEEeccCCcccc-------------ceeccccCCCCceEEEEEec-Cc--eEEeecCCeEEEEec
Q 038568 37 VHNSLLYAASLN-EINVFDLISDYSHV-------------DTFSNDLSSSGSVKSITFHI-TK--IFTAHQDCKIRVWKI 99 (357)
Q Consensus 37 ~s~~~l~t~~~d-~i~iw~~~~~~~~~-------------~~~~~~~~~~~~v~~l~~~~-~~--l~~~~~d~~i~vwd~ 99 (357)
+.+..+++++.+ ....|+. ..+..+ ..+.+ |.+.|.+++|+| +. |++++.|++|++||+
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~-~gg~~v~~~~~~G~~~~~~~~l~G---H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQ-LGSTAVLKHTDYGKLASNPPILLG---QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred CCCCCcEeECCceEEEEEec-CCceEEeeccccccCCCCCceEeC---CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 335677777777 7778876 332221 13455 999999999998 54 999999999999999
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLE 176 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~ 176 (357)
.++....... .....+.+|...|.+++|+| ++|++++.|++|++||+++++.+.
T Consensus 106 ~~~~~~~~~~-----------------------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~ 162 (493)
T PTZ00421 106 PEEGLTQNIS-----------------------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE 162 (493)
T ss_pred CCCccccccC-----------------------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE
Confidence 7653211000 00012348999999999998 589999999999999999998888
Q ss_pred hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc-eeEEEEecCCCEEEEEe-
Q 038568 177 SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST-VNALALNGDGSLLFSGG- 253 (357)
Q Consensus 177 ~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~- 253 (357)
.+ ..|...|.+++|+|++ .|++++.|+.|++||++ ....+..+..|.+. +..+.|.+++..+++++
T Consensus 163 ~l-~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r----------sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~ 231 (493)
T PTZ00421 163 VI-KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR----------DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGC 231 (493)
T ss_pred EE-cCCCCceEEEEEECCCCEEEEecCCCEEEEEECC----------CCcEEEEEecCCCCcceEEEEcCCCCeEEEEec
Confidence 87 7899999999999999 59999999999999998 34456667778754 45678888877777654
Q ss_pred ---cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEec-CCCeEEEeeCCCCcceeeeeeecCCcCceEE
Q 038568 254 ---CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGS-ADRTVRIWQRGKENCYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 254 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~ 327 (357)
.|+.|++||+++.......... .+...+....|+++ +|++++ .|+.|++||+.+++..... ...+..++.+
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~--~~~s~~~~~g 308 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS--SYSSVEPHKG 308 (493)
T ss_pred CCCCCCeEEEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe--eccCCCCCcc
Confidence 4789999999876533222111 22334444455544 777776 5999999999987432221 1235567888
Q ss_pred EEEeeCC
Q 038568 328 LVAISSS 334 (357)
Q Consensus 328 ~~~~~~~ 334 (357)
++|.|..
T Consensus 309 ~~~~pk~ 315 (493)
T PTZ00421 309 LCMMPKW 315 (493)
T ss_pred eEecccc
Confidence 8888864
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=4.4e-32 Score=213.32 Aligned_cols=250 Identities=18% Similarity=0.268 Sum_probs=204.1
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|.+.|+.+.+.|.. +++.+..+.+.|||..+......... . ......+.+|...-.+
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-~-------------------~~Pdl~L~gH~~eg~g 182 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-E-------------------CRPDLRLKGHEKEGYG 182 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-c-------------------CCCceEEEeecccccc
Confidence 88999999999865 77788899999999875432221110 0 0001223377777788
Q ss_pred EEEec---CeEEEEecCCeEEEEEcCcchh-------hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccc
Q 038568 148 LVVKQ---GLMYSVSWDRSFKIWNASNYKC-------LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 148 ~~~~~---~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~ 215 (357)
++|++ ..|++++.|+.|++||+..... ...+ .+|...|..++|++-. .|++++.|+.+.|||.|
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~-~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R--- 258 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIF-SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTR--- 258 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEe-ecCCcceehhhccccchhhheeecCCCeEEEEEcC---
Confidence 99999 8999999999999999975432 2223 7899999999999865 69999999999999999
Q ss_pred cccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---e
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---L 291 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 291 (357)
.. ..++.....+|.++|+|++|+| ++..||+|+.|++|.+||+++... .+..+.+|...|.++.|+|. .
T Consensus 259 ---~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 259 ---SN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred ---CC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCce
Confidence 31 4456667788999999999999 667899999999999999998765 67788999999999999997 9
Q ss_pred EEEecCCCeEEEeeCCCC-----------cceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 292 LASGSADRTVRIWQRGKE-----------NCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||+++.|+.+.+||+..- .+.+++....||...|..+.|+|+.+ ..++|.+.|+.+.||+
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP------W~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP------WTIASVAEDNILQIWQ 402 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCC------eEEEEecCCceEEEee
Confidence 999999999999999642 13456778889999999999999998 4789999999999995
No 83
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.1e-31 Score=197.87 Aligned_cols=294 Identities=16% Similarity=0.224 Sum_probs=204.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcccc--ceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHV--DTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~ 99 (357)
|.+.|++++|+ |++|||++.| .|+||++ ++.+.. +.++... .-+..+.++|.||. +++.-...++++|.+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~-~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDV-RDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEec-chhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 99999999999 9999999999 9999999 653221 2222111 23467889999996 666666778999987
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
...+.-.....+ +......+-..|.-.+..+-... .++++++.|..|.+|+++ |+.+..
T Consensus 163 ~K~~dG~~~~~~------------------v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~ 223 (420)
T KOG2096|consen 163 VKKTDGSGSHHF------------------VHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQS 223 (420)
T ss_pred eecccCCCCccc------------------ccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeee
Confidence 643321000000 00000011125666676666655 899999999999999998 899988
Q ss_pred ccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC
Q 038568 178 VNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
+ ......-...+.+|+|+ +++++.---|++|.+-..+.. .-+....+..+.+|++.|..++|+++.+.+++.+.||
T Consensus 224 i-dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG--~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 224 I-DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG--TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG 300 (420)
T ss_pred e-ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc--chhhhhhhheeccchhheeeeeeCCCcceeEEEecCC
Confidence 8 66667777889999996 777888889999997532211 1112345667899999999999999999999999999
Q ss_pred eEEEEeccc----CCceeeeeec----cCC-ccce-EEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceE
Q 038568 257 WIVVWERER----DHRMVFAEAL----WGH-TGAL-LCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVK 326 (357)
Q Consensus 257 ~i~vwd~~~----~~~~~~~~~~----~~~-~~~v-~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~ 326 (357)
++++||.+- ++.+..++.. ... ..++ +.++++++.||.+ ....++++..++++...++. ..|...|+
T Consensus 301 ~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e--~~h~~~Is 377 (420)
T KOG2096|consen 301 KWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELE--DIHSTTIS 377 (420)
T ss_pred cEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHH--HhhcCcee
Confidence 999999862 1111111111 111 1222 3444444555544 45579999999886444333 56899999
Q ss_pred EEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 327 SLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 327 ~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+++|+++++ +++|+| |..+++.
T Consensus 378 ~is~~~~g~-------~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 378 SISYSSDGK-------YIATCG-DRYVRVI 399 (420)
T ss_pred eEEecCCCc-------EEeeec-ceeeeee
Confidence 999999999 999998 6777763
No 84
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-32 Score=222.29 Aligned_cols=275 Identities=19% Similarity=0.325 Sum_probs=219.1
Q ss_pred Ccccee---EEEEe---cceEEEeeCC-ceEEEeccCCcc-----ccceeccccCCCCceEEEEEecCc--eEEeecCCe
Q 038568 28 HHMIIS---CLAVH---NSLLYAASLN-EINVFDLISDYS-----HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCK 93 (357)
Q Consensus 28 h~~~i~---~~~~s---~~~l~t~~~d-~i~iw~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~ 93 (357)
|...|. ++..+ +++|+|||.| .|++|+...... .+..++. |...|++++...++ |++++.|-+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~---HsDWVNDiiL~~~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH---HSDWVNDIILCGNGKTLISASSDTT 96 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhh---hHhHHhhHHhhcCCCceEEecCCce
Confidence 555566 55555 7889999999 999999832222 3667777 99999999998776 999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE-ec--CeEEEEecCCeEEEEEcC
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV-KQ--GLMYSVSWDRSFKIWNAS 170 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~--~~l~~~~~dg~i~iwd~~ 170 (357)
|++|+..... ..+...+. .|.+.|.|+++ .+ ..+|+|+-|+.|.+||++
T Consensus 97 VK~W~~~~~~-~~c~stir---------------------------~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 97 VKVWNAHKDN-TFCMSTIR---------------------------THKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred EEEeecccCc-chhHhhhh---------------------------cccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 9999998764 23333332 89999999999 44 889999999999999999
Q ss_pred cch--hhhhc--------cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 171 NYK--CLESV--------NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 171 ~~~--~~~~~--------~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
++. .+..+ ..++...|.+++.++.+ .+++|+..+.+++||.+ ..+.+..+++|...|..
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr----------t~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR----------TCKKIMKLRGHTDNVRV 218 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc----------cccceeeeeccccceEE
Confidence 873 33332 13677899999999999 48999999999999998 56677788899999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
+..++||+.+++++.||+|++||+...+ .+.++..|...|.++..+++ .+++|+.||.|..=|+++......+.
T Consensus 219 ll~~dDGt~~ls~sSDgtIrlWdLgqQr---Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic- 294 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDGTIRLWDLGQQR---CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC- 294 (735)
T ss_pred EEEcCCCCeEeecCCCceEEeeeccccc---eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee-
Confidence 9999999999999999999999999776 45567779999999998887 99999999999999999863333332
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
....+|..+..+...+ -+-++..|+.|+-|
T Consensus 295 --k~daPv~~l~~~~~~~-------~~WvtTtds~I~rW 324 (735)
T KOG0308|consen 295 --KEDAPVLKLHLHEHDN-------SVWVTTTDSSIKRW 324 (735)
T ss_pred --cCCCchhhhhhccccC-------Cceeeeccccceec
Confidence 2345677776665444 34556667777776
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-31 Score=196.90 Aligned_cols=259 Identities=19% Similarity=0.314 Sum_probs=205.2
Q ss_pred eEEEeeCC-ceEEEeccCCc-----------cccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeee
Q 038568 41 LLYAASLN-EINVFDLISDY-----------SHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~-----------~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
.|++|+.. .|.=+++.... .++-.+.. |.++|++++.+.-.+++|+.|.+|+|||+....+...+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a---H~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA---HAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccc---cccceeEEEecceeEeccCCCCcEEEEeccchhhhcce
Confidence 36777777 77777762111 11334444 99999999999989999999999999999987765444
Q ss_pred eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhhhccccccc
Q 038568 109 STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184 (357)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (357)
. .|.+.|+++.|.+ +.|++|+.||.|.+|+....+++..+ .+|..
T Consensus 80 l------------------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~sl-K~H~~ 128 (362)
T KOG0294|consen 80 L------------------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSL-KAHKG 128 (362)
T ss_pred e------------------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeee-ccccc
Confidence 3 7899999999999 48999999999999999999999999 89999
Q ss_pred cEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 185 AVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 185 ~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.|+.++++|.++ -++.+.|+.+++||+- .++ ...+..+ ....+.+.|+|.|.+++.+..++ |-+|.+
T Consensus 129 ~Vt~lsiHPS~KLALsVg~D~~lr~WNLV------~Gr--~a~v~~L---~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~ 196 (362)
T KOG0294|consen 129 QVTDLSIHPSGKLALSVGGDQVLRTWNLV------RGR--VAFVLNL---KNKATLVSWSPQGDHFVVSGRNK-IDIYQL 196 (362)
T ss_pred ccceeEecCCCceEEEEcCCceeeeehhh------cCc--cceeecc---CCcceeeEEcCCCCEEEEEeccE-EEEEec
Confidence 999999999996 5678899999999987 111 1222222 22334499999999998888776 999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeE
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIV 342 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 342 (357)
.+......+. ....+.|+.|... .|++|++|+.|.+||.... .+...+.+|...|-++.+-.+.. ..
T Consensus 197 d~A~v~~~i~----~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~-----~~ 264 (362)
T KOG0294|consen 197 DNASVFREIE----NPKRILCATFLDGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYTNPE-----HE 264 (362)
T ss_pred ccHhHhhhhh----ccccceeeeecCCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEecCC-----ce
Confidence 8765332221 2255777777655 9999999999999999985 77888999999999998654421 13
Q ss_pred EEEEcCCCCeEEecC
Q 038568 343 SIGSGSLNGEIKVWD 357 (357)
Q Consensus 343 ~l~s~~~dg~v~~wd 357 (357)
+|+|+|.||.|++||
T Consensus 265 ~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWD 279 (362)
T ss_pred EEEEeccCceEEEEE
Confidence 999999999999997
No 86
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-31 Score=202.32 Aligned_cols=241 Identities=18% Similarity=0.283 Sum_probs=197.8
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
.+.+|.. |...|.+++.+|+. ++||+.|....+|+..+++....+.
T Consensus 56 S~~tF~~---H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt----------------------------- 103 (399)
T KOG0296|consen 56 SLVTFDK---HTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT----------------------------- 103 (399)
T ss_pred ceeehhh---cCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-----------------------------
Confidence 4566776 99999999999976 8999999999999999988543332
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
+|...|+++.|+. .+||+|..+|.|+||+..++.....+ ...-..+.=+.|+|.+ .|++|+.||.+-.|.+.
T Consensus 104 -gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~-~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip--- 178 (399)
T KOG0296|consen 104 -GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL-DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP--- 178 (399)
T ss_pred -CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-ecccCceEEEEecccccEEEeecCCCcEEEEECC---
Confidence 9999999999999 89999999999999999999888887 4566778889999988 49999999999999997
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc-------------------
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW------------------- 276 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------------------- 276 (357)
.....+.+.+|..++++=.|.|+|+.++++..||+|++||+.++.++.....-.
T Consensus 179 -------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g 251 (399)
T KOG0296|consen 179 -------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKG 251 (399)
T ss_pred -------CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEec
Confidence 335677888999999999999999999999999999999999886544332000
Q ss_pred -----------------------------CCccceEEEeecC---c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 277 -----------------------------GHTGALLCLINVG---D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 277 -----------------------------~~~~~v~~~~~~~---~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
.+...+.++.+.| . +.|+|+-||+|.|||+... .++..-.|.
T Consensus 252 ~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he 327 (399)
T KOG0296|consen 252 NSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHE 327 (399)
T ss_pred cCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCC
Confidence 0111111222222 2 7789999999999999874 345556689
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+|+.+.|.+ .. +|++++.||.|+.||
T Consensus 328 ~~V~~l~w~~-t~-------~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 328 DGVTKLKWLN-TD-------YLLTACANGKVRQWD 354 (399)
T ss_pred CceEEEEEcC-cc-------hheeeccCceEEeee
Confidence 9999999999 44 899999999999998
No 87
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=9.1e-31 Score=195.28 Aligned_cols=286 Identities=20% Similarity=0.256 Sum_probs=217.3
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCcc----------ccc--eeccccCCCCceEEEEEecC--c-eEEe
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYS----------HVD--TFSNDLSSSGSVKSITFHIT--K-IFTA 88 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~----------~~~--~~~~~~~~~~~v~~l~~~~~--~-l~~~ 88 (357)
|.+.|+++... |+|+++|+.| .|.+||+ +... ... .-+....|.-.|.++.|.|- + +.++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl-~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDL-QNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEe-ccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 99999999998 9999999999 9999999 4422 011 11222358889999999983 3 8899
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-----CeEEEEecCCe
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-----GLMYSVSWDRS 163 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~ 163 (357)
+.|.+++|||.++.+....+ ...+.|.+-+++| .++|+|..|-.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F-------------------------------~me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDF-------------------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred cccceEEEeecccceeeEEe-------------------------------ecCceeehhhcChhhhcceEEEEecCCCc
Confidence 99999999999987654443 3356777777777 57888999999
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccc-----cccccceeeeeEeeccccc
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHN-----KERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 236 (357)
|++.|+.+|..-..+ .+|...|.++.|+|.. .|++|+.||.|++||++..... .........+..-..|.+.
T Consensus 170 VrLCDi~SGs~sH~L-sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gk 248 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTL-SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGK 248 (397)
T ss_pred EEEEeccCCcceeee-ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccce
Confidence 999999999999999 9999999999999987 3999999999999999843111 0111122223335578899
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc----eEEEeecCceEEEecCCCeEEEeeCCCCcce
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA----LLCLINVGDLLASGSADRTVRIWQRGKENCY 312 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 312 (357)
|+.++|..++.++++++.|..+++|+..+++..........|... +..-+.+.+.++---.++.+.++++-++
T Consensus 249 vngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg--- 325 (397)
T KOG4283|consen 249 VNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG--- 325 (397)
T ss_pred eeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCc---
Confidence 999999999999999999999999999887643221111112111 1111222333333344588999999887
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..+..+..|-..|.+..+-|+-+ ...+|+.|+.|..|
T Consensus 326 s~ir~l~~h~k~i~c~~~~~~fq-------~~~tg~~d~ni~~w 362 (397)
T KOG4283|consen 326 SFVRRLSTHLKRINCAAYRPDFE-------QCFTGDMNGNIYMW 362 (397)
T ss_pred eEEEeeecccceeeEEeecCchh-------hhhccccCCccccc
Confidence 66788889988999999999988 89999999999888
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.6e-31 Score=217.99 Aligned_cols=304 Identities=18% Similarity=0.194 Sum_probs=222.6
Q ss_pred eEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec------------Cc-eEEeecCCeEEE
Q 038568 33 SCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI------------TK-IFTAHQDCKIRV 96 (357)
Q Consensus 33 ~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~------------~~-l~~~~~d~~i~v 96 (357)
-++.|+ .+.|.+...| .++|||+ .+...+.......-|...|+.+.-.| .+ ++|++.|++|++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDv-rD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDV-RDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEec-cccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 356677 7788888999 9999999 55443332222222888888877654 12 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccc-------cccccccccEEEEEEec--CeEEEEecCCeEEEE
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKK-------RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIW 167 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iw 167 (357)
|++.....-..+....-..+.........+...+..... .........+.+++.+| ++|++|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 999863322221111000000000000000000000000 11124456799999999 999999999999999
Q ss_pred EcCcchhhhhccccccccEEEEEEecCC----eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc----------
Q 038568 168 NASNYKCLESVNKAHEDAVNAVVVSDNG----VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH---------- 233 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------- 233 (357)
++...+....+ .+|...|.|+.++... +|++++.|..|.+||+... ..++.++.+|
T Consensus 487 ~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---------y~l~qtld~HSssITsvKFa 556 (1080)
T KOG1408|consen 487 DLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---------YDLVQTLDGHSSSITSVKFA 556 (1080)
T ss_pred Eehhhhhhhhe-ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---------cchhhhhcccccceeEEEEe
Confidence 99988888888 8999999999998643 4999999999999998621 1112222222
Q ss_pred ---------------------------------------ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 234 ---------------------------------------RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 234 ---------------------------------------~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
...++.|+..|..+++++++.|..|+|||+.++++...++.
T Consensus 557 ~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg 636 (1080)
T KOG1408|consen 557 CNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG 636 (1080)
T ss_pred ecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc
Confidence 23466777778888999999999999999999998888887
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
-.+|.+....+..+|. ||++.+.|.++.++|+.++ +++....||...|+++.|.+|.+ .|++.+.||.
T Consensus 637 s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~nDCk-------HlISvsgDgC 706 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLNDCK-------HLISVSGDGC 706 (1080)
T ss_pred cccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecccch-------hheeecCCce
Confidence 7888887766666555 9999999999999999998 88899999999999999999998 9999999999
Q ss_pred EEecC
Q 038568 353 IKVWD 357 (357)
Q Consensus 353 v~~wd 357 (357)
|.+|.
T Consensus 707 IFvW~ 711 (1080)
T KOG1408|consen 707 IFVWK 711 (1080)
T ss_pred EEEEE
Confidence 99994
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-31 Score=204.55 Aligned_cols=242 Identities=19% Similarity=0.313 Sum_probs=200.4
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
.+..+++.+ |..+|..+.|| .++|++++.+ .+.+||+ .++.....+.. ++...+.+++|.||+ +++|
T Consensus 259 ~kl~~tlvg-----h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv-~tgd~~~~y~~--~~~~S~~sc~W~pDg~~~V~G 330 (519)
T KOG0293|consen 259 FKLKKTLVG-----HSQPVSYIMWSPDDRYLLACGFDEVLSLWDV-DTGDLRHLYPS--GLGFSVSSCAWCPDGFRFVTG 330 (519)
T ss_pred eeeeeeeec-----ccCceEEEEECCCCCeEEecCchHheeeccC-Ccchhhhhccc--CcCCCcceeEEccCCceeEec
Confidence 556666665 99999999999 8999999999 9999999 99999888874 256899999999998 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKI 166 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 166 (357)
+.|+++..||++..... .-.. -....|.+++..+ +++++.+.|..|++
T Consensus 331 s~dr~i~~wdlDgn~~~-~W~g-----------------------------vr~~~v~dlait~Dgk~vl~v~~d~~i~l 380 (519)
T KOG0293|consen 331 SPDRTIIMWDLDGNILG-NWEG-----------------------------VRDPKVHDLAITYDGKYVLLVTVDKKIRL 380 (519)
T ss_pred CCCCcEEEecCCcchhh-cccc-----------------------------cccceeEEEEEcCCCcEEEEEecccceee
Confidence 99999999999865321 1110 1124688999888 88889999999999
Q ss_pred EEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc--eeEEEEe
Q 038568 167 WNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST--VNALALN 243 (357)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~ 243 (357)
++.++......+ ....+|++++.+.+++ +++.-.+..+.+||++ ....+..+.+|... +-.-+|.
T Consensus 381 ~~~e~~~dr~li--se~~~its~~iS~d~k~~LvnL~~qei~LWDl~----------e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 381 YNREARVDRGLI--SEEQPITSFSISKDGKLALVNLQDQEIHLWDLE----------ENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred echhhhhhhccc--cccCceeEEEEcCCCcEEEEEcccCeeEEeecc----------hhhHHHHhhcccccceEEEeccC
Confidence 999876666544 5677899999999995 7777789999999998 55667777777654 4444554
Q ss_pred c-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCC
Q 038568 244 G-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 244 ~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~ 308 (357)
. +..++++|++|+.|+||+..+++ ++..+.||...|.|++|+|. ++|++++||+||||....
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 4 55799999999999999999988 66788899999999999986 999999999999998764
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-29 Score=200.23 Aligned_cols=263 Identities=20% Similarity=0.312 Sum_probs=213.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccce--------------eccc-cCCCCceEEEEEecCc--eEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDT--------------FSND-LSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~--------------~~~~-~~~~~~v~~l~~~~~~--l~~ 87 (357)
|.-+|.|++++ +++.++++.+ +|.=|+. .++..... ++.. ..|...|.+++.++|+ |++
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v-~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDV-LTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeeh-hcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 99999999999 8899999999 9999998 66553311 1111 1388899999999998 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
|+.|..|.||+.++.+..+.+ .+|.+.|.+++|-. +.+++++.|+.|+
T Consensus 220 gg~d~~v~Iw~~~t~ehv~~~------------------------------~ghr~~V~~L~fr~gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 220 GGRDRHVQIWDCDTLEHVKVF------------------------------KGHRGAVSSLAFRKGTSELYSASADRSVK 269 (479)
T ss_pred cCCCceEEEecCcccchhhcc------------------------------cccccceeeeeeecCccceeeeecCCceE
Confidence 999999999999988765443 39999999999998 8999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCCeEEE-EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+|++.....+.++ .+|++.|.+|....-+++++ |+.|+++++|++. ......+.++.+.+-|++|-.
T Consensus 270 vw~~~~~s~vetl-yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-----------eesqlifrg~~~sidcv~~In 337 (479)
T KOG0299|consen 270 VWSIDQLSYVETL-YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-----------EESQLIFRGGEGSIDCVAFIN 337 (479)
T ss_pred EEehhHhHHHHHH-hCCccceeeechhcccceEEeccccceeEEEecc-----------ccceeeeeCCCCCeeeEEEec
Confidence 9999999999999 89999999999887777555 5599999999985 233445678888999999975
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeecc---------CCccceEEEeecC--ceEEEecCCCeEEEeeCCCC-cce
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALW---------GHTGALLCLINVG--DLLASGSADRTVRIWQRGKE-NCY 312 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~-~~~ 312 (357)
+ ..+++|+.||.|.+|++.+.+++....... .++.+|++++..+ +++++|+.+|.|++|.+..+ ...
T Consensus 338 ~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 338 D-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred c-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 5 579999999999999998877654433221 1223677777655 49999999999999999886 234
Q ss_pred eeeeeecCCcCceEEEEEeeCCC
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.++..+. -.+-|++++|++++.
T Consensus 417 ~~l~~ls-~~GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 417 NLLYSLS-LVGFVNSLAFSNSGK 438 (479)
T ss_pred ceeeecc-cccEEEEEEEccCCC
Confidence 4555555 567899999999998
No 91
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-31 Score=192.26 Aligned_cols=249 Identities=18% Similarity=0.261 Sum_probs=197.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEEEe-cCc---eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSITFH-ITK---IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~-~~~---l~~~~~d~~i~vwd 98 (357)
|++.|..+..+ |++|||++.| +|+|+....++ +++.++.+ |.++|..++|. |.. |++++.||.|.||.
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G---h~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG---HSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC---CCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 99999998887 9999999999 99999994444 56788888 99999999997 443 99999999999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcc--
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNY-- 172 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~-- 172 (357)
-.+++..+.. . +..|...|++++|.| -.|++++.||.|.+.+.+..
T Consensus 87 e~~g~w~k~~-e---------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 87 EENGRWTKAY-E---------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred cCCCchhhhh-h---------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 8887533222 1 238999999999999 67999999999999998764
Q ss_pred hhhhhccccccccEEEEEEecC---C------------eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce
Q 038568 173 KCLESVNKAHEDAVNAVVVSDN---G------------VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~~~~---~------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
-....+...|.-.|++++|.|. | +|++|+.|..|++|+.. .. .......+.+|...|
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~------~~--~w~~e~~l~~H~dwV 210 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD------SD--SWKLERTLEGHKDWV 210 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC------Cc--chhhhhhhhhcchhh
Confidence 2333444789999999999874 2 49999999999999987 21 345556689999999
Q ss_pred eEEEEecCC----CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcc
Q 038568 238 NALALNGDG----SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 238 ~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~ 311 (357)
+.++|.|.- .+|+++++||++.||..+..........+......+..++|+ ++.|+.++.|+.|.+|.-....+
T Consensus 211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gk 290 (299)
T KOG1332|consen 211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGK 290 (299)
T ss_pred hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCc
Confidence 999999943 489999999999999887443333333444455667666665 66999999999999998765434
Q ss_pred eeee
Q 038568 312 YRCM 315 (357)
Q Consensus 312 ~~~~ 315 (357)
++.+
T Consensus 291 w~~v 294 (299)
T KOG1332|consen 291 WEEV 294 (299)
T ss_pred EEEc
Confidence 4443
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=1.5e-30 Score=225.18 Aligned_cols=289 Identities=21% Similarity=0.289 Sum_probs=220.8
Q ss_pred CccceeEEEEe--cceEEEee--CC-ceEEEeccCC------------ccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 28 HHMIISCLAVH--NSLLYAAS--LN-EINVFDLISD------------YSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~--~d-~i~iw~~~~~------------~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
+...|.++..+ |..+|||+ .| .++||+. +. .+.+..... |.+.|+|+.|+||+ ||+|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~-~~vl~~~~~~~~~l~k~l~~m~~---h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQ-DPVLDEKEEKNENLPKHLCTMDD---HDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeecc-ccccchhhhhhcccchhheeecc---ccCceeEEEECCCCCeEeec
Confidence 56679999999 99999999 88 8999997 33 223334444 99999999999998 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEE-ecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTV-RRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
+.|+.|.||+.........+.. ..+...+ ......++.+|...|.+++|+| .++++++.|++|.
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs-------------~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGS-------------TGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVI 154 (942)
T ss_pred cCcceEEEeeecccCCcccccc-------------cccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEE
Confidence 9999999999874100000000 0000000 0111244568999999999999 8999999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec------ccccee
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK------HRSTVN 238 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~~v~ 238 (357)
+||.++.+.+..+ .+|...|..+.|.|-| +|++-+.|++|++|+.. .......+.+ ......
T Consensus 155 iwn~~tF~~~~vl-~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~----------dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 155 IWNAKTFELLKVL-RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS----------DWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEccccceeeeee-ecccccccceEECCccCeeeeecCCceEEEEEcc----------cceeeEeeccchhhCCCcceee
Confidence 9999999989888 9999999999999999 69999999999999976 2222222222 234578
Q ss_pred EEEEecCCCEEEEEec----CCeEEEEecccCCceeeeeeccCCccceEEEeecCc-------------------eEEEe
Q 038568 239 ALALNGDGSLLFSGGC----DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-------------------LLASG 295 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~l~~~ 295 (357)
.+.|+|||++|++.-. -..+.|.+-.+.+ .-..+.||..++.++.|+|. .+|+|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk---~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK---VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCce---eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 8999999999998743 3357777765443 45678899999999999842 57899
Q ss_pred cCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 296 SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.|++|-||.....++.-.+. .-....|.+++|+|||- .|+.+|.||+|.+.
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~--~lf~~SI~DmsWspdG~-------~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIH--NLFNKSIVDMSWSPDGF-------SLFACSLDGTVALI 352 (942)
T ss_pred cCCccEEEEecCCCCchhhhh--hhhcCceeeeeEcCCCC-------eEEEEecCCeEEEE
Confidence 999999999997764433333 33467899999999998 89999999999864
No 93
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=3.4e-31 Score=200.34 Aligned_cols=242 Identities=17% Similarity=0.240 Sum_probs=203.3
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....+.|..|+||+ |++|+.||-|.+|+..+++..+.++-.. ...+.-+..+|.|+
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----------------------qd~fMMmd~aVlci 269 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----------------------QDNFMMMDDAVLCI 269 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh----------------------hcceeecccceEEE
Confidence 56778899999998 9999999999999999987654443211 12233678899999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccccee
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
.|+. .++++|+.||.|++|.+++|.|+..|..+|...|+|+.|+.|+ .+++++.|.++++--+. .++
T Consensus 270 ~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK----------SGK 339 (508)
T KOG0275|consen 270 SFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK----------SGK 339 (508)
T ss_pred eecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc----------cch
Confidence 9999 8999999999999999999999999977999999999999998 69999999999999887 677
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC---ceEEEecCCCeEE
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG---DLLASGSADRTVR 302 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~ 302 (357)
.+..+++|.+.|+...|.++|..+++++.||+|++|+.++.++...++.+ +...+|..+..-| ..++++...++|+
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVY 418 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence 88999999999999999999999999999999999999998866554433 3556676666544 4999999999999
Q ss_pred EeeCCCCcceeeeeeecC---CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 303 IWQRGKENCYRCMAFLEG---HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.++.. +.+..+.. -.+...+.+.+|.+. ++.+.+.|+.++.+
T Consensus 419 imn~qG----QvVrsfsSGkREgGdFi~~~lSpkGe-------wiYcigED~vlYCF 464 (508)
T KOG0275|consen 419 IMNMQG----QVVRSFSSGKREGGDFINAILSPKGE-------WIYCIGEDGVLYCF 464 (508)
T ss_pred EEeccc----eEEeeeccCCccCCceEEEEecCCCc-------EEEEEccCcEEEEE
Confidence 999874 44554432 335566778999998 99999999988765
No 94
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.8e-31 Score=219.75 Aligned_cols=277 Identities=17% Similarity=0.259 Sum_probs=213.3
Q ss_pred cceeEEEEe--cceEEEeeCCceEEEeccCCccc----cceeccccCCCCceEEEEEecC---ceEEeecCCeEEEEecC
Q 038568 30 MIISCLAVH--NSLLYAASLNEINVFDLISDYSH----VDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCKIRVWKIT 100 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~----~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~i~vwd~~ 100 (357)
....+|..+ -..++.++...+.|+.+ +.... ...+.......-.+..+.|... .|+|++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai-~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAI-NPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEee-CcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 345555565 55677777667777776 33211 1111111112234556778743 39999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
....-..+ ..|..|...+.++.|++ ++|++|+.||+|++||++..+...+
T Consensus 119 k~~rnk~l---------------------------~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 119 KSIRNKLL---------------------------TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred ccccchhh---------------------------hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 63221222 23348999999999999 9999999999999999999998888
Q ss_pred ccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 178 VNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
+ ......|..+.|+|.. +|+++...|.+++||+| ...++...+.+|.++|.++.|+|++.+||+|+.|
T Consensus 172 ~-~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR---------qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 172 F-RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR---------QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred c-cccchhhhceeeccCCCceEEEecCCceEEEeecc---------CchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence 8 7788899999999854 69999999999999999 3456677888999999999999999999999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecC--CCeEEEeeCCCCcceeeeeeecCCcCceEEEEE
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSA--DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
+.|+|||+.+.+..... +. ....++.++.|-|. .|++++. |-.|+|||++.+ +-+...+..|...++.++|
T Consensus 242 K~vkiWd~t~~~~~~~~-tI-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W 317 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKH-TI-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAW 317 (839)
T ss_pred ccEEEEeccCCCcccee-EE-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceec
Confidence 99999999876533222 11 23467899999887 7887764 789999999986 6778889999999999999
Q ss_pred eeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 331 ISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
..... ..|.+++.||+|.
T Consensus 318 ~~~d~------~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 318 DSGDR------INLWSCSKDGTVL 335 (839)
T ss_pred cCCCc------eeeEeecCccHHH
Confidence 77333 3899999999864
No 95
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.2e-29 Score=214.22 Aligned_cols=196 Identities=13% Similarity=0.202 Sum_probs=147.0
Q ss_pred cccccEEEEEEec---CeEEEEecCCeEEEEEcCcch--------hhhhccccccccEEEEEEecCC-e-EEEEeCCCeE
Q 038568 140 EHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYK--------CLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRI 206 (357)
Q Consensus 140 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i 206 (357)
+|.+.|.+++|+| .+|++|+.||+|++||+.++. ++..+ .+|...|.+++|+|++ . +++++.|+.|
T Consensus 72 gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 72 GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL-KGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEe-ecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 8999999999998 689999999999999997642 22234 6789999999999988 3 6789999999
Q ss_pred EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE-
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL- 285 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~- 285 (357)
++||++ .......+. |...|.+++|+|+|.+|++++.|+.|+|||+++++. ...+.+|.+.+.+.
T Consensus 151 rIWDl~----------tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~---i~tl~gH~g~~~s~~ 216 (568)
T PTZ00420 151 NIWDIE----------NEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI---ASSFHIHDGGKNTKN 216 (568)
T ss_pred EEEECC----------CCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE---EEEEecccCCceeEE
Confidence 999998 223333343 567899999999999999999999999999998874 34566787654322
Q ss_pred ----eecC--ceEEEecCCC----eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 286 ----INVG--DLLASGSADR----TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 286 ----~~~~--~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
.+++ ++|++++.|+ .|+|||+++.........+..+.+.+......+++. ++++|+.|+.|++
T Consensus 217 v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~-------l~lsGkGD~tIr~ 289 (568)
T PTZ00420 217 IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGL-------IYLIGKGDGNCRY 289 (568)
T ss_pred EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCC-------EEEEEECCCeEEE
Confidence 2223 4888877664 799999996432222223334444444444444465 8899999999999
Q ss_pred cC
Q 038568 356 WD 357 (357)
Q Consensus 356 wd 357 (357)
||
T Consensus 290 ~e 291 (568)
T PTZ00420 290 YQ 291 (568)
T ss_pred EE
Confidence 96
No 96
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.1e-29 Score=213.29 Aligned_cols=245 Identities=16% Similarity=0.198 Sum_probs=179.0
Q ss_pred CceEEEEEecC--ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHIT--KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
..|.....+++ .+++++.+.....|+...+............ ......+.+|.+.|.+++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~-----------------~~~~~~l~GH~~~V~~v~f 83 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKL-----------------ASNPPILLGQEGPIIDVAF 83 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccC-----------------CCCCceEeCCCCCEEEEEE
Confidence 34444455555 3888888888889987654321111110000 0011234589999999999
Q ss_pred ec---CeEEEEecCCeEEEEEcCcch-------hhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccc
Q 038568 151 KQ---GLMYSVSWDRSFKIWNASNYK-------CLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 151 ~~---~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
+| ++|++|+.|++|++||+.++. ++..+ .+|...|.+++|+|++ .|++++.|+.|++||++
T Consensus 84 sP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~------ 156 (493)
T PTZ00421 84 NPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE------ 156 (493)
T ss_pred cCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC------
Confidence 98 689999999999999997642 34555 7899999999999975 69999999999999998
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccce-EEEeecCc--eEEEe
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL-LCLINVGD--LLASG 295 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~~~--~l~~~ 295 (357)
.......+..|...|.+++|+|++.+|++++.|+.|++||+++++. ...+.+|.... ..+.|.++ .++++
T Consensus 157 ----tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~---v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 ----RGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI---VSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred ----CCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE---EEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 3456667788999999999999999999999999999999998774 34555676543 34455544 55554
Q ss_pred c----CCCeEEEeeCCCCcceeeeeeecCC-cCceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 296 S----ADRTVRIWQRGKENCYRCMAFLEGH-EKPVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 296 ~----~dg~i~vw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
+ .|+.|++||+++.. .++.....+ ...+....|++++. +|++++ .||.|++||
T Consensus 230 G~s~s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~~-------~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDTN-------LLYIGSKGEGNIRCFE 288 (493)
T ss_pred ecCCCCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCCC-------EEEEEEeCCCeEEEEE
Confidence 3 48999999998753 233333333 34556667889988 888777 599999997
No 97
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.7e-30 Score=207.38 Aligned_cols=314 Identities=16% Similarity=0.242 Sum_probs=237.5
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--- 84 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--- 84 (357)
+.+-.|...+++ |++.|.||... |.+||+|+.| +|+||.+ .++.++.+++ ..+.|.|++|+|..
T Consensus 387 PFPt~~~lvyrG-----Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi-~TgRcvr~~~----~d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 387 PFPTRCALVYRG-----HTGLVRSISVDPSGEWLASGSDDGTVRIWEI-ATGRCVRTVQ----FDSEIRSVAWNPLSDLC 456 (733)
T ss_pred CCcceeeeeEec-----cCCeEEEEEecCCcceeeecCCCCcEEEEEe-ecceEEEEEe----ecceeEEEEecCCCCce
Confidence 344556666775 99999999988 9999999999 9999999 9999999998 77899999999975
Q ss_pred eEEeecCCeEEEEecCCcccee------eeeecCc--cccceeeeecCCCeEEEecccccccccccccEEEEEEec--Ce
Q 038568 85 IFTAHQDCKIRVWKITASRQHQ------LVSTLPT--VKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL 154 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~ 154 (357)
++++.....+.|-+..-+..+. .+...+. ..+.....+.....-... ....+...|...|.++.|+. .+
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~-~~v~~~I~~~k~i~~vtWHrkGDY 535 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELE-KGVCIVIKHPKSIRQVTWHRKGDY 535 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhc-cceEEEEecCCccceeeeecCCce
Confidence 4444545556666654442211 1111110 000111111111000000 00134457889999999999 88
Q ss_pred EEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 155 MYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 155 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
|++...+ ..|.|.++...+....| ....+.+.++.|+|.. +|++++ ...|++||+. ....+..+
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~PF-~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~----------kqelvKkL 603 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQSPF-RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLS----------KQELVKKL 603 (733)
T ss_pred EEEeccCCCcceEEEEecccccccCch-hhcCCceeEEEecCCCceEEEEe-ccceEEEehh----------HHHHHHHH
Confidence 8887764 56999999887777777 6677889999999988 555554 4789999997 45555666
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee---
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ--- 305 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~--- 305 (357)
......|..++.+|.|..|+.|+.|+.+..||+.-... +.+.+.-|...++.++|++. ++++|+.||++.|+-
T Consensus 604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk--Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V 681 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK--PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV 681 (733)
T ss_pred hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc--hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee
Confidence 66677899999999999999999999999999986543 55677889999999999998 899999999999984
Q ss_pred ---CCCCcceeeeeeecCCcCc----eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 306 ---RGKENCYRCMAFLEGHEKP----VKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 306 ---~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+......-++..+++|... |....|+|... +|+++|.||+|++|
T Consensus 682 Y~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-------WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 682 YNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-------WLFSAGADGTIRLF 732 (733)
T ss_pred ehhhhcCCceEeeeeccCceeecccceEeecccCCCc-------eEEecCCCceEEee
Confidence 3334456778899999876 99999999999 99999999999998
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=7.1e-30 Score=187.18 Aligned_cols=236 Identities=19% Similarity=0.332 Sum_probs=195.3
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
+.+++ |...|.+++|+.++ |++++.|+++.+|+++..+..... ...+
T Consensus 14 r~~~~---~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~----------------------------~~~g 62 (313)
T KOG1407|consen 14 RELQG---HVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL----------------------------VYRG 62 (313)
T ss_pred HHhhh---hhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh----------------------------cccC
Confidence 44555 99999999999887 999999999999999876432221 1238
Q ss_pred ccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc
Q 038568 141 HWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH 216 (357)
Q Consensus 141 ~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 216 (357)
|.+.|-.++|.| +.+++++.|.+|++||++.+++...+ . ....-.-+.|+|+| +++++..|..|.+.|.+
T Consensus 63 h~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i-~-~~~eni~i~wsp~g~~~~~~~kdD~it~id~r---- 136 (313)
T KOG1407|consen 63 HTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARI-E-TKGENINITWSPDGEYIAVGNKDDRITFIDAR---- 136 (313)
T ss_pred CCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEe-e-ccCcceEEEEcCCCCEEEEecCcccEEEEEec----
Confidence 999999999999 89999999999999999999999888 3 33334457788887 79999999999999998
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEE
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLAS 294 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 294 (357)
..+..... .....+.-++|+.++.+++.....|.|.|.....-+ +...+..|.....|+.|+|+ +||+
T Consensus 137 ------~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLk---pv~si~AH~snCicI~f~p~GryfA~ 206 (313)
T KOG1407|consen 137 ------TYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLK---PVQSIKAHPSNCICIEFDPDGRYFAT 206 (313)
T ss_pred ------ccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEeccccc---cccccccCCcceEEEEECCCCceEee
Confidence 22332222 234567788999888888877788999999887554 66788889999999999987 9999
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
|+.|-.+.+||++.- .++..+..+.-||+.+.|+.+++ +||+||.|..|-|
T Consensus 207 GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~-------~lASaSEDh~IDI 257 (313)
T KOG1407|consen 207 GSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGR-------MLASASEDHFIDI 257 (313)
T ss_pred ccccceeeccChhHh---hhheeeccccCceEEEEeccCcc-------eeeccCccceEEe
Confidence 999999999999974 77788888899999999999999 9999999988754
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.7e-29 Score=185.66 Aligned_cols=249 Identities=18% Similarity=0.278 Sum_probs=192.7
Q ss_pred CCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 70 SSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+|..-|+++.|.+.+ +++|+.|++++|||.+.+...-... ..|..|.+.|..
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~T--------------------------s~Wrah~~Si~r 64 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCT--------------------------SSWRAHDGSIWR 64 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEe--------------------------eeEEecCCcEEE
Confidence 488999999999865 9999999999999975544222211 234489999999
Q ss_pred EEEec----CeEEEEecCCeEEEEEcCc--c-------hhhhhccccccccEEEEEEecCC---eEEEEeCCCeEEEEEc
Q 038568 148 LVVKQ----GLMYSVSWDRSFKIWNASN--Y-------KCLESVNKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWER 211 (357)
Q Consensus 148 ~~~~~----~~l~~~~~dg~i~iwd~~~--~-------~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~ 211 (357)
+.|.+ +.+|+++.|+++.||.-.. . ....++ ......|+.+.|.|.. +|++++.||.+|||+.
T Consensus 65 V~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl-~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 65 VVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTL-VDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEe-ecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 99988 8899999999999997521 1 122233 5567889999999965 4999999999999986
Q ss_pred cccccccccccceeeeeEee-------ccccceeEEEEec---CCCEEEEEecC-----CeEEEEecccCC-ceeeeeec
Q 038568 212 SVVDHNKERKSRHMLVTTLV-------KHRSTVNALALNG---DGSLLFSGGCD-----RWIVVWERERDH-RMVFAEAL 275 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~---~~~~l~~~~~d-----g~i~vwd~~~~~-~~~~~~~~ 275 (357)
..... -....+..++. .+..+..|+.|+| ...+|++|+.+ +.++||...... .......+
T Consensus 144 ~dp~n----Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L 219 (361)
T KOG2445|consen 144 PDPMN----LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL 219 (361)
T ss_pred CCccc----cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc
Confidence 52111 11122222222 4667788999998 34578888776 479999887655 56667788
Q ss_pred cCCccceEEEeecCc------eEEEecCCCeEEEeeCCCCc-----------------ceeeeeeecCCcCceEEEEEee
Q 038568 276 WGHTGALLCLINVGD------LLASGSADRTVRIWQRGKEN-----------------CYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 276 ~~~~~~v~~~~~~~~------~l~~~~~dg~i~vw~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
.+|..+|..++|.|+ +||+++.|| |+||.+.... +.+.+..+..|++.|..+.|+-
T Consensus 220 ~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm 298 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM 298 (361)
T ss_pred CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee
Confidence 899999999999987 899999999 9999987311 3456677889999999999999
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+. .|++.|.||.||+|.
T Consensus 299 tGt-------iLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 299 TGT-------ILSSTGDDGCVRLWK 316 (361)
T ss_pred eee-------EEeecCCCceeeehh
Confidence 998 999999999999994
No 100
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.8e-28 Score=182.92 Aligned_cols=271 Identities=15% Similarity=0.274 Sum_probs=200.0
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC----ccccceeccccCCCCceEEEEEec-Cc---eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD----YSHVDTFSNDLSSSGSVKSITFHI-TK---IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~----~~~~~~~~~~~~~~~~v~~l~~~~-~~---l~~~~~d~~i~v 96 (357)
|.+-|.|+.|+ |+.+|||+.| +|+|||. +. .......+. |.+.|..+.|.+ .. +++++.|+++.|
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~-~~~s~~W~~Ts~Wra---h~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSDQTVKIWDS-TSDSGTWSCTSSWRA---HDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CcceeeeeeecccCceeeeccCCCcEEEEec-cCCCCceEEeeeEEe---cCCcEEEEEecCccccceEEEEecCCceee
Confidence 99999999999 9999999999 9999996 33 344556676 999999999985 32 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcc
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNY 172 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 172 (357)
|.-........- ........+....+.|+++.|.| -.+++++.||+++||+.-..
T Consensus 88 WEE~~~~~~~~~---------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 88 WEEQEKSEEAHG---------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eeeccccccccc---------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 986321110000 00000122236678999999999 57999999999999986432
Q ss_pred ------hhhhhcc------ccccccEEEEEEecCC----eEEEEeCC-----CeEEEEEccccccccccccceeeeeEee
Q 038568 173 ------KCLESVN------KAHEDAVNAVVVSDNG----VVYTGSAD-----GRIRVWERSVVDHNKERKSRHMLVTTLV 231 (357)
Q Consensus 173 ------~~~~~~~------~~~~~~v~~~~~~~~~----~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (357)
.....++ ..+..+..|+.|+|.. +|++|+.+ +.+.||... +.......+.++.
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~------e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYN------ENGRKWLKVAELP 220 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEec------CCcceeeeehhcC
Confidence 2333331 2456778899999765 36666655 488999876 4444666777888
Q ss_pred ccccceeEEEEecC----CCEEEEEecCCeEEEEecccC-----------------CceeeeeeccCCccceEEEeec--
Q 038568 232 KHRSTVNALALNGD----GSLLFSGGCDRWIVVWERERD-----------------HRMVFAEALWGHTGALLCLINV-- 288 (357)
Q Consensus 232 ~~~~~v~~~~~~~~----~~~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~-- 288 (357)
+|..+|+.++|.|+ -..|++++.|| |+||.+... -++..+..+.+|.+.|..+.|+
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 99999999999994 24899999999 999998731 1233455678999999999886
Q ss_pred CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe
Q 038568 289 GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 289 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 331 (357)
+..|++.|.||.||+|...-...+++...+... +.++...|.
T Consensus 300 GtiLsStGdDG~VRLWkany~n~~kC~sv~~~e-~~~~~~~~~ 341 (361)
T KOG2445|consen 300 GTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE-GSVTKPDFS 341 (361)
T ss_pred eeEEeecCCCceeeehhhhhhhhheeeeEEecc-CCCCCcccc
Confidence 559999999999999988766667777766643 234444443
No 101
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=5e-29 Score=205.83 Aligned_cols=332 Identities=20% Similarity=0.209 Sum_probs=238.1
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--c---ceEEEeeCC-ceEEEeccCCc--------------------cccc
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--N---SLLYAASLN-EINVFDLISDY--------------------SHVD 63 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~---~~l~t~~~d-~i~iw~~~~~~--------------------~~~~ 63 (357)
...+.+.+..++| |.+.|.+++|. + -+||++|.| .||||.+.... ....
T Consensus 177 ~~d~f~~v~el~G-----H~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 177 SADSFARVAELEG-----HTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred CCcceeEEEEeec-----cchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 3446677777776 99999999998 2 378899999 99999983221 0111
Q ss_pred eec------c-ccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccc--e--eeeeecCccc-cceeeeecCCCeEE
Q 038568 64 TFS------N-DLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ--H--QLVSTLPTVK-DRLIRSVLPNNYVT 129 (357)
Q Consensus 64 ~~~------~-~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~--~--~~~~~~~~~~-~~~~~~~~~~~~~~ 129 (357)
.+. . ..+|...|+++.|+|.+ |++++.|.++.+|...+..- . .++....... +.....+.++....
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 111 0 01499999999999997 99999999999999876532 1 1222222111 12222333333111
Q ss_pred ----------Eec-cc------ccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc----hhhhhccccccccE
Q 038568 130 ----------VRR-HK------KRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY----KCLESVNKAHEDAV 186 (357)
Q Consensus 130 ----------~~~-~~------~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v 186 (357)
... .. .....+|.+.|.+++|.| .+|++.+.|-+-|++-.-.. ..+.+- +.|...+
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP-QiHGyDl 410 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARP-QIHGYDL 410 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccc-ccccccc
Confidence 111 11 134479999999999999 99999999999999865411 122222 5688899
Q ss_pred EEEEEec-CCeEEEEeCCCeEEEEEccccc----------cc---------------------------cccc-------
Q 038568 187 NAVVVSD-NGVVYTGSADGRIRVWERSVVD----------HN---------------------------KERK------- 221 (357)
Q Consensus 187 ~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~----------~~---------------------------~~~~------- 221 (357)
+|+++-+ +-++++|.....+|+|+....- .. .++.
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 9999988 4479999999999999864210 00 0000
Q ss_pred ----------------------cceeeeeEeeccccceeEEEEecCCCEEEEEecC-----CeEEEEecccCCceeeeee
Q 038568 222 ----------------------SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----RWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 222 ----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~ 274 (357)
.....+..+.+|...|++++.+|+++++++++.. ..|++|+..+..+ ...
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~---~~~ 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ---VQE 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh---hhe
Confidence 0111234566899999999999999999999864 3599999987763 446
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcce-eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCY-RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
+.+|.-.|+.+.|+++ +|++.+.|+++.+|........ ......+.|..-|.+..|+|++. +++|+|.|.
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-------~FaTaSRDK 640 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-------YFATASRDK 640 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-------eeEEecCCc
Confidence 7889999999999988 9999999999999998654211 12344788999999999999998 899999999
Q ss_pred eEEecC
Q 038568 352 EIKVWD 357 (357)
Q Consensus 352 ~v~~wd 357 (357)
+|++|.
T Consensus 641 ~VkVW~ 646 (764)
T KOG1063|consen 641 KVKVWE 646 (764)
T ss_pred eEEEEe
Confidence 999993
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=6e-30 Score=199.00 Aligned_cols=239 Identities=18% Similarity=0.275 Sum_probs=195.0
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
...+.+|.+ -.++|+++.|. ++.+++++.| .+++|++ +..+...++.+ |.+.|+++.|.... +++|
T Consensus 209 ~~~~~tLaG-----s~g~it~~d~d~~~~~~iAas~d~~~r~Wnv-d~~r~~~TLsG---HtdkVt~ak~~~~~~~vVsg 279 (459)
T KOG0288|consen 209 SELISTLAG-----SLGNITSIDFDSDNKHVIAASNDKNLRLWNV-DSLRLRHTLSG---HTDKVTAAKFKLSHSRVVSG 279 (459)
T ss_pred hhhhhhhhc-----cCCCcceeeecCCCceEEeecCCCceeeeec-cchhhhhhhcc---cccceeeehhhccccceeec
Confidence 446666765 78899999999 8899999999 9999999 99999999999 99999999998654 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWN 168 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd 168 (357)
+.|.+|+.||+....+.+.+- ..+.+.+++..+..+++|-.|++|++||
T Consensus 280 s~DRtiK~WDl~k~~C~kt~l-------------------------------~~S~cnDI~~~~~~~~SgH~DkkvRfwD 328 (459)
T KOG0288|consen 280 SADRTIKLWDLQKAYCSKTVL-------------------------------PGSQCNDIVCSISDVISGHFDKKVRFWD 328 (459)
T ss_pred cccchhhhhhhhhhheecccc-------------------------------ccccccceEecceeeeecccccceEEEe
Confidence 999999999998865443332 2345666777677889999999999999
Q ss_pred cCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee----ccccceeEEEEe
Q 038568 169 ASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV----KHRSTVNALALN 243 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~ 243 (357)
+++..+.... +..+.|+++..++++ .+++++.|..+.+.|+++ ......+. ......+.+.|+
T Consensus 329 ~Rs~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt----------~eI~~~~sA~g~k~asDwtrvvfS 396 (459)
T KOG0288|consen 329 IRSADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT----------KEIRQTFSAEGFKCASDWTRVVFS 396 (459)
T ss_pred ccCCceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeeccc----------ccEEEEeeccccccccccceeEEC
Confidence 9999998887 445599999999999 488999999999999982 22222222 223458899999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
|++.|+++|+.||.|+||++.+++....... ......|++++|++. .+++++.++.+.+|.
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~-s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSL-STSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEecc-CCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 9999999999999999999998875433332 222336999999876 999999999999993
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.5e-29 Score=195.48 Aligned_cols=252 Identities=21% Similarity=0.382 Sum_probs=203.0
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc-ccccccEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~ 147 (357)
|.-+|.+++++|+. .++++.|++|.-|++.+++....+..-... +.......+.- ..|...+.+
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev-------------~k~~~~~~k~~r~~h~keil~ 207 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV-------------LKSHGNPLKESRKGHVKEILT 207 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh-------------hhhccCCCCcccccccceeEE
Confidence 99999999999985 999999999999999988754322211100 00000000000 389999999
Q ss_pred EEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 148 LVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 148 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
++.++ ++|++|+.|..|.||+.++.+.++.+ .+|.+.|.+++|-... .+++++.|+.|++|++. ..
T Consensus 208 ~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~-~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~----------~~ 276 (479)
T KOG0299|consen 208 LAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF-KGHRGAVSSLAFRKGTSELYSASADRSVKVWSID----------QL 276 (479)
T ss_pred EEEcCCCcEEEecCCCceEEEecCcccchhhcc-cccccceeeeeeecCccceeeeecCCceEEEehh----------Hh
Confidence 99999 99999999999999999999999998 8999999999998655 69999999999999998 56
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEE
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRI 303 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~v 303 (357)
..+.++.+|+..|.++.....++.+.+|+.|+++++|++....+ ..+.++.+.+-|++|-.+ .+++|+++|.|.+
T Consensus 277 s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq----lifrg~~~sidcv~~In~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 277 SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ----LIFRGGEGSIDCVAFINDEHFVSGSDNGSIAL 352 (479)
T ss_pred HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce----eeeeCCCCCeeeEEEecccceeeccCCceEEE
Confidence 67788999999999999988888888899999999999964433 245578889999998766 9999999999999
Q ss_pred eeCCCCcceeeeeeec---------CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKENCYRCMAFLE---------GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~---------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|++.+.++.-...... .+...|++++..|... ++++|+.+|.||+|.
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-------L~asGS~~G~vrLW~ 408 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-------LLASGSWSGCVRLWK 408 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCc-------eEEecCCCCceEEEE
Confidence 9998764322111111 1223899999999998 999999999999993
No 104
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.1e-29 Score=196.99 Aligned_cols=232 Identities=19% Similarity=0.351 Sum_probs=192.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~ 101 (357)
.++.|.++.|- |++||+|... .|+|||. .+...++.+.+ |+.+|..+.|+|.. |++|+.|+.+++||+.+
T Consensus 67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~-k~r~iLR~~~a---h~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDM-KSRVILRQLYA---HQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hccceeEEEeecCCeEEEccCCcCcEEEecc-ccHHHHHHHhh---ccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 66789999998 9999999888 9999998 88778888888 99999999999865 99999999999999998
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcc-hhhhh
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNY-KCLES 177 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~ 177 (357)
.... ..+ .+|++.|.|.+++| .++++|++||.|++||++.. ..+.+
T Consensus 143 a~v~---~~l---------------------------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 143 AYVQ---AEL---------------------------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE 192 (487)
T ss_pred cEEE---EEe---------------------------cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence 7631 111 29999999999999 58999999999999999987 55556
Q ss_pred ccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 178 VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
+ .|..+|..+.+-|.|.+++......|++||+-. ..+.+..+..|...|+|+.+..++..|++|+-|+.
T Consensus 193 l--nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~---------G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 193 L--NHGCPVESVLALPSGSLIASAGGNSVKVWDLTT---------GGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred e--cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecC---------CceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 5 899999999999998544445567999999871 33455555569999999999999999999999999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
+++||+.+-+ .+..+ ...++|++++.+++ .++.|..||.+.+-+...
T Consensus 262 VKVfd~t~~K---vv~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 262 VKVFDTTNYK---VVHSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred eEEEEccceE---EEEee-ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 9999976554 33332 36788998888874 999999999888775443
No 105
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=4.4e-29 Score=206.21 Aligned_cols=238 Identities=20% Similarity=0.363 Sum_probs=205.5
Q ss_pred ccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
.+..+.+.+ |...|..++..++. +++++.||++++|+-..++.... ..
T Consensus 4 Y~ls~~l~g---H~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~-~~--------------------------- 52 (745)
T KOG0301|consen 4 YKLSHELEG---HKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET-HA--------------------------- 52 (745)
T ss_pred ceeEEEecc---CccchheeEecCCeEEeecCCCCceeeeeccCcccccc-ee---------------------------
Confidence 345567777 99999999998887 99999999999999765543321 11
Q ss_pred cccccccEEE-EEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccc
Q 038568 138 WLEHWDAVSD-LVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSV 213 (357)
Q Consensus 138 ~~~~~~~v~~-~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~ 213 (357)
+.+|.+-|.. +++.+ ..+++|+.|++|.+|...+..++..+ .+|+..|.++....++.+++|+-|.++++|...
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~L-kgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~- 130 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTL-KGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG- 130 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhh-hccccceeeeecCCcCceEecccccceEEecch-
Confidence 1256666666 77776 56999999999999999999999999 999999999998888889999999999999865
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eE
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LL 292 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l 292 (357)
++...+.+|...|++++.-|++ .+++|+.|.+|++|.-.+ ..+++.+|...|+.++.-++ .+
T Consensus 131 -----------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~-----~l~tf~gHtD~VRgL~vl~~~~f 193 (745)
T KOG0301|consen 131 -----------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT-----LLKTFSGHTDCVRGLAVLDDSHF 193 (745)
T ss_pred -----------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc-----hhhhhccchhheeeeEEecCCCe
Confidence 4566689999999999999987 899999999999998742 56788899999999999888 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++++.||.|++|++. + +++.+..+|..-|.++....++. .++|+|.|+++++|+
T Consensus 194 lScsNDg~Ir~w~~~-g---e~l~~~~ghtn~vYsis~~~~~~-------~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDLD-G---EVLLEMHGHTNFVYSISMALSDG-------LIVSTGEDRTLRIWK 247 (745)
T ss_pred EeecCCceEEEEecc-C---ceeeeeeccceEEEEEEecCCCC-------eEEEecCCceEEEee
Confidence 999999999999994 3 77889999999999999777766 999999999999996
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=191.12 Aligned_cols=249 Identities=20% Similarity=0.267 Sum_probs=202.2
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
.+.+..+.+.+++| |...|+.+.|+ ...+++++.| .|+||.. ........... |.++|+.+..+|++
T Consensus 246 ~d~~s~q~l~~~~G-----h~kki~~v~~~~~~~~v~~aSad~~i~vws~-~~~s~~~~~~~---h~~~V~~ls~h~tge 316 (506)
T KOG0289|consen 246 FDKPSNQILATLKG-----HTKKITSVKFHKDLDTVITASADEIIRVWSV-PLSSEPTSSRP---HEEPVTGLSLHPTGE 316 (506)
T ss_pred EecchhhhhhhccC-----cceEEEEEEeccchhheeecCCcceEEeecc-ccccCcccccc---ccccceeeeeccCCc
Confidence 34455566666665 99999999999 7889999999 9999999 66666666665 99999999999987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
|++++.|++..+.|++++........- ...-.+++.+|+| ..|.+|..|
T Consensus 317 YllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------------------~s~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 317 YLLSASNDGTWAFSDISSGSQLTVVSDE----------------------------TSDVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred EEEEecCCceEEEEEccCCcEEEEEeec----------------------------cccceeEEeeEcCCceEEeccCCC
Confidence 999999999999999998765544321 1224589999999 778899999
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEee-ccccceeE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-KHRSTVNA 239 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 239 (357)
|.|++||+.++..+..| .+|.++|..+.|+.+|+ |++++.|+.|++||+| ..+....+. ....++.+
T Consensus 369 ~~vkiwdlks~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR----------Kl~n~kt~~l~~~~~v~s 437 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR----------KLKNFKTIQLDEKKEVNS 437 (506)
T ss_pred ceEEEEEcCCccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh----------hhcccceeecccccccee
Confidence 99999999999999999 88999999999999995 9999999999999999 222233332 22347999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
+.|.+.|.+|+.++.|=+|++++-.+ +.......+..|.+...++.|... ++++++.|..++++.+
T Consensus 438 ~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 438 LSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999999998887777776443 234456677778888888888765 9999999999888764
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-29 Score=207.26 Aligned_cols=293 Identities=18% Similarity=0.324 Sum_probs=224.3
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEEE-ecCc--
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSITF-HITK-- 84 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~-~~~~-- 84 (357)
...++..++. |.++|+.++.. ++.|+++|.| +|++|+. ... -...++.. |...|.|+++ .++.
T Consensus 62 s~~~~asme~-----HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~-~~~~~~c~stir~---H~DYVkcla~~ak~~~l 132 (735)
T KOG0308|consen 62 STPYIASMEH-----HSDWVNDIILCGNGKTLISASSDTTVKVWNA-HKDNTFCMSTIRT---HKDYVKCLAYIAKNNEL 132 (735)
T ss_pred ccchhhhhhh-----hHhHHhhHHhhcCCCceEEecCCceEEEeec-ccCcchhHhhhhc---ccchheeeeecccCcee
Confidence 3446788887 99999999988 8899999999 9999999 554 56777887 9999999999 5655
Q ss_pred eEEeecCCeEEEEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
+++||.|+.|.+||++++.. .......+.. ....++...|++++.++ ..+++|+.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~---------------------sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVN---------------------SLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccc---------------------cCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999999998733 1111111100 01127889999999999 58999999
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
.+.|++||.++++.+..+ .+|...|.++..++|| ++++++.||+|++||+. ...++.++..|...|++
T Consensus 192 ek~lr~wDprt~~kimkL-rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLg----------qQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKL-RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLG----------QQRCLATYIVHKEGVWA 260 (735)
T ss_pred ccceEEeccccccceeee-eccccceEEEEEcCCCCeEeecCCCceEEeeecc----------ccceeeeEEeccCceEE
Confidence 999999999999999999 7999999999999999 69999999999999998 67788889999999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceee---
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRC--- 314 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~--- 314 (357)
+..+|+-..+++|+.||.|..=|+++......+.. ...+|..+..+ .+-+-++..|+.|+-|..+-......
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick---~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~ 337 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK---EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGD 337 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecccCCchhheEeec---CCCchhhhhhccccCCceeeeccccceecCCccccccccCCC
Confidence 99999999999999999999999998643323222 33445444444 33557777888888886653210000
Q ss_pred -------------------eeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 315 -------------------MAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 315 -------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.....| ..+|..-+.-.|.+ .++|=...|.+.+||
T Consensus 338 ~~~~~T~~~~~~~~~~~tp~~vi~G-g~ai~k~~mL~dkR-------hVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 338 LDFFSTDSNNHSCDLTNTPDSVIPG-GAAIKKHAMLNDKR-------HVLTKDAKGNVALWD 391 (735)
T ss_pred CCcccccCCCccccccCCCceeccC-chhhhhhhhhcCcc-------eEeeecCCCCEEEEE
Confidence 000111 11223333344444 899999999999998
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=3.5e-27 Score=188.34 Aligned_cols=300 Identities=19% Similarity=0.223 Sum_probs=216.4
Q ss_pred ccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccce
Q 038568 29 HMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 29 ~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~ 105 (357)
+..|.|++|. +.-++||..+ .|.||+. .+.+..+.... |.+.|.++....++ |++|+.|..|..||- .-+..
T Consensus 246 kk~Vl~v~F~engdviTgDS~G~i~Iw~~-~~~~~~k~~~a---H~ggv~~L~~lr~GtllSGgKDRki~~Wd~-~y~k~ 320 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDVITGDSGGNILIWSK-GTNRISKQVHA---HDGGVFSLCMLRDGTLLSGGKDRKIILWDD-NYRKL 320 (626)
T ss_pred ceEEEEEEEcCCCCEEeecCCceEEEEeC-CCceEEeEeee---cCCceEEEEEecCccEeecCccceEEeccc-ccccc
Confidence 4789999999 7889999999 9999999 77666666666 99999999999988 999999999999992 22221
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccc------------cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKK------------RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
+.+ .+|...............+.+....+ .+..+|......++.+| +++++++.|+.+++|+ .
T Consensus 321 r~~-elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~ 397 (626)
T KOG2106|consen 321 RET-ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--D 397 (626)
T ss_pred ccc-cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--C
Confidence 111 22222222222222222222222222 33468889999999999 8999999999999999 3
Q ss_pred chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEE
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.+.+.+ .....+..|+.|+|.|.++.|...|...+.|.+ ....+..-. ...++++++|+|+|.+||.
T Consensus 398 ~k~~wt--~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e----------~~~lv~~~~-d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 398 HKLEWT--KIIEDPAECADFHPSGVVAVGTATGRWFVLDTE----------TQDLVTIHT-DNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred CceeEE--EEecCceeEeeccCcceEEEeeccceEEEEecc----------cceeEEEEe-cCCceEEEEEcCCCCEEEE
Confidence 444444 356788999999999999999999999999987 333333333 3889999999999999999
Q ss_pred EecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-----------------------------------------
Q 038568 252 GGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----------------------------------------- 290 (357)
Q Consensus 252 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------------- 290 (357)
|+.|+.|++|.+.......... -..+..+++.+.|+.+
T Consensus 465 gs~d~~iyiy~Vs~~g~~y~r~-~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF 543 (626)
T KOG2106|consen 465 GSHDNHIYIYRVSANGRKYSRV-GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGF 543 (626)
T ss_pred ecCCCeEEEEEECCCCcEEEEe-eeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEE
Confidence 9999999999987554332211 1122255566655533
Q ss_pred ---------------------eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCC
Q 038568 291 ---------------------LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL 349 (357)
Q Consensus 291 ---------------------~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 349 (357)
++|+|.+.|.|++|...-.+.........+|.+.|++++|.-+.. .|.+.+.
T Consensus 544 ~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~-------~li~tg~ 616 (626)
T KOG2106|consen 544 EVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS-------HLISTGK 616 (626)
T ss_pred EEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc-------eEEecCC
Confidence 444444555555555443333455667789999999999998887 7777779
Q ss_pred CCeEEecC
Q 038568 350 NGEIKVWD 357 (357)
Q Consensus 350 dg~v~~wd 357 (357)
|..|..|+
T Consensus 617 D~Si~qW~ 624 (626)
T KOG2106|consen 617 DTSIMQWR 624 (626)
T ss_pred CceEEEEE
Confidence 99999995
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.7e-27 Score=171.52 Aligned_cols=237 Identities=19% Similarity=0.293 Sum_probs=190.1
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEecc-CCcc---ccceeccccCCCCceEEEEEecCc------eEEee-cCCe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLI-SDYS---HVDTFSNDLSSSGSVKSITFHITK------IFTAH-QDCK 93 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~-~~~~---~~~~~~~~~~~~~~v~~l~~~~~~------l~~~~-~d~~ 93 (357)
|++.|.|.+|+ |++||+|+.| +|++..+. ++.+ .-..|.. |.+.|..++|..+- |++++ .|..
T Consensus 88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nm---hdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNM---HDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeee---cCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 99999999999 9999999999 99987762 2222 1234454 99999999998541 55554 3666
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE-EecCeEEEEecCCeEEEEEcCcc
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV-VKQGLMYSVSWDRSFKIWNASNY 172 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~iwd~~~~ 172 (357)
|.+-|-..++....+. +|.+.|.++- |+.-++++|+.|.+|++||++-.
T Consensus 165 iy~tdc~~g~~~~a~s------------------------------ghtghilalyswn~~m~~sgsqdktirfwdlrv~ 214 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALS------------------------------GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN 214 (350)
T ss_pred EEEeecCCCCcceeec------------------------------CCcccEEEEEEecCcEEEccCCCceEEEEeeecc
Confidence 7777777776544433 8999998874 55599999999999999999988
Q ss_pred hhhhhcccc------ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC
Q 038568 173 KCLESVNKA------HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 173 ~~~~~~~~~------~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (357)
.++.++... ....|.++++.|.|+ |++|-.|....+||++ ...+++.+..|...|.++.|+|.
T Consensus 215 ~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydir----------g~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 215 SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIR----------GGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEee----------CCceeeeeCCCccceeEEEeCCC
Confidence 888776311 236799999999995 8888999999999999 67788999999999999999999
Q ss_pred CCEEEEEecCCeEEEEecccCCc-eeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 246 GSLLFSGGCDRWIVVWERERDHR-MVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
..++++++.|..|++-|++..-. ...+.....|+..+..+.|++. .+++.+.|.++.+|-+.
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999974321 1123344568888999999988 78899999999999764
No 110
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=2e-28 Score=206.31 Aligned_cols=303 Identities=15% Similarity=0.237 Sum_probs=239.6
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+..+.+.+.++++ +...|+++.-+ =+.+|.|..+ +|.|+++ ..++.+.+|+. ..++|++++|..|+
T Consensus 188 Nvrt~K~v~~f~~-----~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl-K~dkil~sFk~---d~g~VtslSFrtDG~p 258 (910)
T KOG1539|consen 188 NVRTGKVVYTFQE-----FFSRITAIEQSPALDVVAIGLENGTVIIFNL-KFDKILMSFKQ---DWGRVTSLSFRTDGNP 258 (910)
T ss_pred EeccCcEEEEecc-----cccceeEeccCCcceEEEEeccCceEEEEEc-ccCcEEEEEEc---cccceeEEEeccCCCe
Confidence 4467788888886 89999999998 7899999999 9999999 99999999993 35999999999887
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD 161 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d 161 (357)
+++|+..|.+.+||++..+....+.. .|.+.|....|.+ ..+++++.|
T Consensus 259 ~las~~~~G~m~~wDLe~kkl~~v~~n-----------------------------ah~~sv~~~~fl~~epVl~ta~~D 309 (910)
T KOG1539|consen 259 LLASGRSNGDMAFWDLEKKKLINVTRN-----------------------------AHYGSVTGATFLPGEPVLVTAGAD 309 (910)
T ss_pred eEEeccCCceEEEEEcCCCeeeeeeec-----------------------------cccCCcccceecCCCceEeeccCC
Confidence 88888899999999998776554443 7888999999999 899999999
Q ss_pred CeEEEEEcCcch---hhhhccccccccEEEEEEe-cCC-eEEEEeCCCeEEEEEccccccccccc---------------
Q 038568 162 RSFKIWNASNYK---CLESVNKAHEDAVNAVVVS-DNG-VVYTGSADGRIRVWERSVVDHNKERK--------------- 221 (357)
Q Consensus 162 g~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~--------------- 221 (357)
+.+++|=..++. .+..+..+|..+..++.|. .++ .+.+++.|++.+.+++......++..
T Consensus 310 nSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 310 NSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFS 389 (910)
T ss_pred CceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccc
Confidence 999998665433 2223337899999999998 455 48999999999888875332110000
Q ss_pred ----------------------------------------cceee-eeE-----eeccccceeEEEEecCCCEEEEEecC
Q 038568 222 ----------------------------------------SRHML-VTT-----LVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 222 ----------------------------------------~~~~~-~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
..... ... ++.....+++++.++.|++.+.|+..
T Consensus 390 ~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~ 469 (910)
T KOG1539|consen 390 TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK 469 (910)
T ss_pred hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC
Confidence 00000 000 11122568899999999999999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc----------------------
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC---------------------- 311 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~---------------------- 311 (357)
|.|-+|+++++-....+..-..|..+|+.++.++. .+++++.+|.+++||..+...
T Consensus 470 G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 470 GTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL 549 (910)
T ss_pred CeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence 99999999998754444334689999999998875 899999999999999876431
Q ss_pred ----------------eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 312 ----------------YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 312 ----------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+.+..+.+|.+.|++++|+||++ +|++++.|++||+||
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr-------WlisasmD~tIr~wD 604 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR-------WLISASMDSTIRTWD 604 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc-------EEEEeecCCcEEEEe
Confidence 122344678999999999999999 999999999999998
No 111
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5e-28 Score=191.20 Aligned_cols=271 Identities=18% Similarity=0.271 Sum_probs=207.7
Q ss_pred eEEEeeCC--ceEEEeccCCccccceeccccCCCCceEEE-EEecCceEEe-ecCCeEEEEecCCccceeeeeecCcccc
Q 038568 41 LLYAASLN--EINVFDLISDYSHVDTFSNDLSSSGSVKSI-TFHITKIFTA-HQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 41 ~l~t~~~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l-~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
.+.+++.| .+.+||+ .++.....+++.. ...-.++ +..+..++++ .....+.+|.+..........
T Consensus 9 ~~sssS~d~~~~~~~dl-~TGt~~~~ykg~~--~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------- 78 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDL-RTGTSLLQYKGSY--LAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI------- 78 (476)
T ss_pred EEeccCCCCcceeEEec-CCCceeEEecCcc--cccchhhhhhchhheeeecccCccccccccCchhhhhhhc-------
Confidence 34455667 7999999 9998888888621 1222222 2334454444 445679999997665443111
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
--.++|.+++-+| .+++.|+..|.|++|.+.+|..+..+ .+|-..|+|+.|+.|
T Consensus 79 -----------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~d 134 (476)
T KOG0646|consen 79 -----------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSDD 134 (476)
T ss_pred -----------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeCC
Confidence 2347899999999 55666669999999999999999999 999999999999999
Q ss_pred C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC--CEEEEEecCCeEEEEecccCCceee
Q 038568 195 G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG--SLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 195 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
+ .|++|+.||.|.+|++...-.... .....+...+..|.-+|+.+...+.| .+|++++.|.++++||+..+..+..
T Consensus 135 gs~iiTgskDg~V~vW~l~~lv~a~~-~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt 213 (476)
T KOG0646|consen 135 GSHIITGSKDGAVLVWLLTDLVSADN-DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT 213 (476)
T ss_pred CcEEEecCCCccEEEEEEEeeccccc-CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE
Confidence 9 699999999999999863322211 12567888999999999999987753 5899999999999999998864432
Q ss_pred eeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc-------------ceeeeeeecCCcC--ceEEEEEeeCC
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN-------------CYRCMAFLEGHEK--PVKSLVAISSS 334 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~-------------~~~~~~~~~~h~~--~v~~~~~~~~~ 334 (357)
+. ....+.+++.+|. .++.|+++|.|.+.++.+-. ....+..+.+|.+ +|+|++.+.|+
T Consensus 214 i~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 214 IT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG 289 (476)
T ss_pred Ee----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence 22 3456777777765 99999999999998876432 1234566788988 99999999999
Q ss_pred CCCCCCeEEEEEcCCCCeEEecC
Q 038568 335 SSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 335 ~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. +|++|+.||+|+|||
T Consensus 290 t-------lLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 290 T-------LLLSGDEDGKVCVWD 305 (476)
T ss_pred c-------EEEeeCCCCCEEEEe
Confidence 9 999999999999998
No 112
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=6.1e-29 Score=198.40 Aligned_cols=281 Identities=17% Similarity=0.272 Sum_probs=221.9
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCCceEEEeccCCc--cccceeccccCCCCceEEEEEecCc--eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLNEINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
.+.+.+|. |..-|.++..+ .++++||+...|+|||+...+ .++..+... .....|.++...||+ |++
T Consensus 410 arq~~tL~------HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl-~rdnyiRSckL~pdgrtLiv 482 (705)
T KOG0639|consen 410 ARQINTLA------HGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCL-NRDNYIRSCKLLPDGRTLIV 482 (705)
T ss_pred HHhhhhhc------cCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCcccccccc-CcccceeeeEecCCCceEEe
Confidence 44566676 99999999999 889999998899999993221 223333221 156789999999997 999
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
|+.-.++.|||+........... ....-...+++.+| +..+++..||.|.
T Consensus 483 GGeastlsiWDLAapTprikael----------------------------tssapaCyALa~spDakvcFsccsdGnI~ 534 (705)
T KOG0639|consen 483 GGEASTLSIWDLAAPTPRIKAEL----------------------------TSSAPACYALAISPDAKVCFSCCSDGNIA 534 (705)
T ss_pred ccccceeeeeeccCCCcchhhhc----------------------------CCcchhhhhhhcCCccceeeeeccCCcEE
Confidence 99999999999987653211111 02234567788888 8899999999999
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
|||+.+...+..| .+|.+.+.||.++++| +|-+|+-|.+||.||++ ++ ..+.. ....+.|.++.++|
T Consensus 535 vwDLhnq~~Vrqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlr------eg----rqlqq-hdF~SQIfSLg~cP 602 (705)
T KOG0639|consen 535 VWDLHNQTLVRQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR------EG----RQLQQ-HDFSSQIFSLGYCP 602 (705)
T ss_pred EEEcccceeeecc-cCCCCCceeEEecCCCceeecCCCccceeehhhh------hh----hhhhh-hhhhhhheecccCC
Confidence 9999999999999 9999999999999999 59999999999999998 21 11111 12357899999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
++.+|++|-.++.+.|......+. ..+.-|...|+++.|. ++++++.+.|+.+..|...-+ ..+...+ -.
T Consensus 603 ~~dWlavGMens~vevlh~skp~k----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~ 674 (705)
T KOG0639|consen 603 TGDWLAVGMENSNVEVLHTSKPEK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ES 674 (705)
T ss_pred CccceeeecccCcEEEEecCCccc----eeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-cc
Confidence 999999999999999988876543 3445688999888775 569999999999999999877 3333333 35
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++|.++..+.|.+ +++||+.|....+|
T Consensus 675 SsVlsCDIS~ddk-------yIVTGSGdkkATVY 701 (705)
T KOG0639|consen 675 SSVLSCDISFDDK-------YIVTGSGDKKATVY 701 (705)
T ss_pred CcceeeeeccCce-------EEEecCCCcceEEE
Confidence 7899999999998 99999999887776
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-27 Score=177.04 Aligned_cols=243 Identities=16% Similarity=0.199 Sum_probs=187.9
Q ss_pred ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccc
Q 038568 59 YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKR 136 (357)
Q Consensus 59 ~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (357)
.++.+.|.. ....|+++.|++++ +++++.|.++++||..++++.+.+.
T Consensus 4 ~~~ak~f~~---~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~--------------------------- 53 (311)
T KOG1446|consen 4 FRPAKVFRE---TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN--------------------------- 53 (311)
T ss_pred ccccccccc---CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee---------------------------
Confidence 455666765 78899999999998 8888999999999999998776665
Q ss_pred ccccccccEEEEEEec--CeEEEEec--CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEc
Q 038568 137 LWLEHWDAVSDLVVKQ--GLMYSVSW--DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWER 211 (357)
Q Consensus 137 ~~~~~~~~v~~~~~~~--~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~ 211 (357)
.+.-.+..++|.. +.++.++. |.+|+..++.+.+.++.+ .+|...|++++.+|-+ .+++++.|++|++||+
T Consensus 54 ---skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl 129 (311)
T KOG1446|consen 54 ---SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL 129 (311)
T ss_pred ---cccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecCCCCeEEecccCCeEEeeEe
Confidence 3344566666665 66666666 889999999999999999 9999999999999977 7999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC-c-eeeeeeccCCccceEEEeecC
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH-R-MVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~-~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+ ..++...+. ...-..++|+|+|-++|++...+.|++||++.-. . ...+....+.......+.|++
T Consensus 130 R----------~~~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~ 197 (311)
T KOG1446|consen 130 R----------VKKCQGLLN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP 197 (311)
T ss_pred c----------CCCCceEEe--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC
Confidence 8 222222222 2233458999999999999988899999998642 2 112222223455667777776
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc---eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP---VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~---v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+ +|+.+...+.+++.|.-+|. ....+.++... -.+.+|.||++ ++++|+.||+|.+|+
T Consensus 198 dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a~ftPds~-------Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 198 DGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSATFTPDSK-------FVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeEEECCCCc-------EEEEecCCCcEEEEE
Confidence 6 88888999999999999984 44444444332 25778999999 999999999999996
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=8.2e-28 Score=177.03 Aligned_cols=227 Identities=15% Similarity=0.169 Sum_probs=190.2
Q ss_pred eccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc
Q 038568 65 FSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW 142 (357)
Q Consensus 65 ~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (357)
+++ |+.+++.+.|+.++ |++++.|.+..||--.+++.+... .+|.
T Consensus 6 l~G---HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty------------------------------~GHt 52 (327)
T KOG0643|consen 6 LQG---HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY------------------------------DGHT 52 (327)
T ss_pred ccc---CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee------------------------------cCCC
Confidence 455 99999999999887 999999999999998777655433 3999
Q ss_pred ccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeC------CCeEEEEEcccc
Q 038568 143 DAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSA------DGRIRVWERSVV 214 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~i~d~~~~ 214 (357)
+.|+|+..+. +.+++|+.|.++++||+++|+++..+ ....+|..+.|+++|.++..+. .+.|.++|++..
T Consensus 53 GavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~ 130 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDD 130 (327)
T ss_pred ceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCC
Confidence 9999999888 99999999999999999999999998 6788999999999995444433 367899999843
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LL 292 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 292 (357)
.... ....+...+..+.+.++.+-|.|-+++|++|.+||.|.+||++++.+ .+.....|...|+.+.++++ ++
T Consensus 131 ~~~~---~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~--~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 131 SSDI---DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE--LVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred hhhh---cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce--eeechhhhccccccccccCCcceE
Confidence 3221 13345666777889999999999999999999999999999999875 44555668889999999888 99
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++++.|.+-++||+++- ..++++. -..||++.+++|...
T Consensus 206 iT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAAISPLLD 244 (327)
T ss_pred EecccCccceeeeccce---eeEEEee-ecccccceecccccc
Confidence 99999999999999985 5555554 467999999999876
No 115
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.8e-28 Score=198.59 Aligned_cols=235 Identities=21% Similarity=0.287 Sum_probs=201.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
+...|+++.|+ |++||+|..+ .|.|||. ...+.+..+.+ .|...|-+++|....+.+|+.|+.|..+|++..+.
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~-~~~k~~~~~~~--~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~ 292 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDV-KEQKKTRTLRG--SHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQH 292 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEeh-hhccccccccC--CcCceeEEEeccCceEEEecCCCcEEEEEEecchh
Confidence 46899999999 9999999999 9999999 77777877775 38999999999988899999999999999988764
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
... . +.+|...|..+.|++ .++|+|+.|+.+.|||....+++..+ ..|
T Consensus 293 ~~~--~---------------------------~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~-~~H 342 (484)
T KOG0305|consen 293 VVS--T---------------------------LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF-TEH 342 (484)
T ss_pred hhh--h---------------------------hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE-ecc
Confidence 433 1 238999999999999 99999999999999999888888888 899
Q ss_pred cccEEEEEEecCC--eEEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE--ecCC
Q 038568 183 EDAVNAVVVSDNG--VVYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG--GCDR 256 (357)
Q Consensus 183 ~~~v~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg 256 (357)
...|.+++|+|-. .||+|+ .|+.|++||.. ....+.... ..+.|..|.|++..+.|+++ ..++
T Consensus 343 ~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~----------~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 343 TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN----------TGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC----------CCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence 9999999999954 688765 59999999987 344444443 46789999999988766664 4577
Q ss_pred eEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 257 WIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
.|.||+..+.. ....+.+|...|..++++|+ .+++|+.|.++++|++-..
T Consensus 412 ~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 412 QITLWKYPSMK---LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cEEEEeccccc---eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 89999998755 56778899999999999887 9999999999999999764
No 116
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.1e-27 Score=178.39 Aligned_cols=234 Identities=15% Similarity=0.263 Sum_probs=184.0
Q ss_pred CCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 70 SSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+....|.++.|+|.. |+.++.||++++||+...+....+ .|..++.+
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-------------------------------~~~~plL~ 59 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-------------------------------KHGAPLLD 59 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-------------------------------ecCCceee
Confidence 367899999999765 888999999999999877543333 78899999
Q ss_pred EEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC-CeEEEEeCCCeEEEEEcccccccccccccee
Q 038568 148 LVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN-GVVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 148 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
++|.+ ..+++|+.||.|+.+|+++++.... ..|..++.|+...+. +.+++|+-|++|++||.+ ...
T Consensus 60 c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~i--gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R----------~~~ 127 (323)
T KOG1036|consen 60 CAFADESTIVTGGLDGQVRRYDLNTGNEDQI--GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR----------NKV 127 (323)
T ss_pred eeccCCceEEEeccCceEEEEEecCCcceee--ccCCCceEEEEeeccCCeEEEcccCccEEEEecc----------ccc
Confidence 99999 9999999999999999998776544 589999999999974 479999999999999998 122
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEE
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRI 303 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~v 303 (357)
....+. ....|.++... ++.|++|+.|..+.+||+++...... .....-+..+.|++..|+ -+++++-||.|.+
T Consensus 128 ~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 128 VVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred cccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhh-hccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 222222 23478888765 66899999999999999998765432 223345566788887774 8889999999988
Q ss_pred eeCCCCc-ceeeeeeecCCc---------CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRGKEN-CYRCMAFLEGHE---------KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~~~~-~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
=.++..+ .......++.|. -||++|+|+|-.. .|+|||.||.|.+||
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~-------tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG-------TFATGGSDGIVNIWD 260 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc-------eEEecCCCceEEEcc
Confidence 6665531 112234455554 3899999999977 899999999999998
No 117
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.8e-29 Score=191.00 Aligned_cols=243 Identities=16% Similarity=0.281 Sum_probs=198.1
Q ss_pred cccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
.....|+.+++. |.+.|..|++....+++++.| +|+.|.. +. .+++++. ....+..|.-+... ++|
T Consensus 96 lsqR~~~~~f~A-----H~G~V~Gi~v~~~~~~tvgdDKtvK~wk~-~~-~p~~til----g~s~~~gIdh~~~~~~FaT 164 (433)
T KOG0268|consen 96 LSQRECIRTFKA-----HEGLVRGICVTQTSFFTVGDDKTVKQWKI-DG-PPLHTIL----GKSVYLGIDHHRKNSVFAT 164 (433)
T ss_pred hhhhhhhheeec-----ccCceeeEEecccceEEecCCcceeeeec-cC-Ccceeee----ccccccccccccccccccc
Confidence 345677888887 999999999998888888999 9999998 54 5777776 45566777766433 888
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSF 164 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i 164 (357)
+|. .|.|||......+..+. -..+.|.++.|+| ..|++++.|+.|
T Consensus 165 cGe--~i~IWD~~R~~Pv~sms------------------------------wG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 165 CGE--QIDIWDEQRDNPVSSMS------------------------------WGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred cCc--eeeecccccCCccceee------------------------------cCCCceeEEecCCCcchheeeeccCCce
Confidence 876 59999998766555443 3457899999999 889999999999
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
.+||+++..++..+ ......+.|+|+|++. |++|..|..++.||++ ....++....+|.+.|.+++|+
T Consensus 213 vLyD~R~~~Pl~KV--i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR---------~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 213 VLYDLRQASPLKKV--ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMR---------NLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred EEEecccCCcccee--eeeccccceecCccccceeeccccccceehhhh---------hhcccchhhcccceeEEEeccC
Confidence 99999999999887 5566778999999775 9999999999999998 2456777888999999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
|.|+-+++|+.|.+|+||..+.+.......+ .....|.|+.|+-+ ++++|++|+.|++|.....
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~~SRdiYht--kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred CCcchhccccccceEEEeecCCCcchhhhhH--hhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 9999999999999999999987654322221 12345888888766 9999999999999987653
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=191.38 Aligned_cols=277 Identities=16% Similarity=0.231 Sum_probs=219.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~ 103 (357)
-..+|.|+||+ .+.||.+-.+ .|.||++....-....+.+ +....|.+++|++++ |++.+.+|.|.-||+.+.+
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g--~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG--PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec--CCCCceeeEEEccCCeEEeecCCceEEEEecccCc
Confidence 56889999999 7789999999 9999999555555556665 467899999999776 9999999999999999988
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc-c
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN-K 180 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~ 180 (357)
....+. ...+.|++++.+| ..++.|+.||.+..++...++...... .
T Consensus 102 ~~~~~d------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 102 QKYNID------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred eeEEec------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 665554 4457999999999 889999999988888887766544321 4
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceee---eeEeec-cccceeEEEEecCCCEEEEEecC
Q 038568 181 AHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHML---VTTLVK-HRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
...+.+.++.|+|++. ++.|+.||.|++||....+. .... +..+.. ...-|+++.|-.++ .|++|..-
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t------~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~ 224 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQT------LHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSA 224 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCce------EEEeeecccccccCCceEEEEEEEeecC-cEEEecCC
Confidence 4568999999999995 99999999999999983221 1111 111111 23347788877554 79999999
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc-eeeeeeecCCcCceEEEEEee
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC-YRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~h~~~v~~~~~~~ 332 (357)
|+|.+||...+. .++.+..|...|.+++..++ ++++++.|+.|..|...+.+. +........|...|.+++..+
T Consensus 225 G~V~FWd~~~gT---LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~ 301 (691)
T KOG2048|consen 225 GTVTFWDSIFGT---LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE 301 (691)
T ss_pred ceEEEEcccCcc---hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec
Confidence 999999999887 55677789999999887665 999999999999998876532 445566778999999999998
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEe
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+ .+++||.|..+.+
T Consensus 302 ~---------~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 302 N---------ALISGGRDFTLAI 315 (691)
T ss_pred c---------eEEecceeeEEEE
Confidence 8 7999999998764
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=177.59 Aligned_cols=237 Identities=19% Similarity=0.242 Sum_probs=178.4
Q ss_pred cCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccE
Q 038568 69 LSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV 145 (357)
Q Consensus 69 ~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 145 (357)
.+....|.+|+|+|.. +++++.|++||+|+++....... + ....|.++|
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-k---------------------------a~~~~~~Pv 75 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-K---------------------------AQQSHDGPV 75 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-h---------------------------hhhccCCCe
Confidence 3578899999999932 66899999999999986422111 1 112789999
Q ss_pred EEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC---eEEEEeCCCeEEEEEcccccccccc
Q 038568 146 SDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 146 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
.+++|+. ..+++|+.|+.+++||+.+++. ..+ ..|..+|..+.|-+.. .|++|+-|.+|+.||.|
T Consensus 76 L~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-------- 145 (347)
T KOG0647|consen 76 LDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-------- 145 (347)
T ss_pred EEEEEccCCceEEeeccCCceEEEEccCCCe-eee-eecccceeEEEEecCCCcceeEecccccceeecccC--------
Confidence 9999999 8999999999999999999954 445 6899999999998765 39999999999999998
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec--CceEEEecCC
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--GDLLASGSAD 298 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d 298 (357)
...++..+. ....++++..- ..+++++..++.|.+|+++.+.... ......-+-.++|++.. .+..+.|+-+
T Consensus 146 --~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~-k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 146 --SSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEF-KRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred --CCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchh-hhhcCcccceeeEEEEEecCCceEeeeec
Confidence 344555444 34566766654 3478888999999999997654211 11111123345566544 4477999999
Q ss_pred CeEEEeeCCCCcceeeeeeecCCc---------CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 299 RTVRIWQRGKENCYRCMAFLEGHE---------KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 299 g~i~vw~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|.+.+..+..+.+ ..-..++-|. -+|++|+|+|... .|+|+|.||+..+||
T Consensus 220 Grv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-------tlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 220 GRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-------TLVTAGSDGTFSFWD 279 (347)
T ss_pred ceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeecccc-------eEEEecCCceEEEec
Confidence 9999999987533 3333445454 2588999999887 999999999999998
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=183.61 Aligned_cols=250 Identities=17% Similarity=0.295 Sum_probs=206.1
Q ss_pred cccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEecc-----CC------------------------
Q 038568 11 AFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLI-----SD------------------------ 58 (357)
Q Consensus 11 ~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~-----~~------------------------ 58 (357)
..++.|+.++.+ |.+.|++++|+ +.++++++.| +..||... ..
T Consensus 177 ~Esg~CL~~Y~G-----H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d 251 (481)
T KOG0300|consen 177 LESGACLATYTG-----HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD 251 (481)
T ss_pred eccccceeeecc-----cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence 346888888887 99999999999 8999999999 99999831 00
Q ss_pred ----------ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCC
Q 038568 59 ----------YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNN 126 (357)
Q Consensus 59 ----------~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (357)
..++..|.+ |.+.|.+..|...+ +++++.|.+..+||+++++....+.
T Consensus 252 ~~~~sD~~tiRvPl~~ltg---H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt----------------- 311 (481)
T KOG0300|consen 252 SSEKSDGHTIRVPLMRLTG---HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT----------------- 311 (481)
T ss_pred cccccCCceeeeeeeeeec---cccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-----------------
Confidence 012334444 89999999998765 9999999999999999998765554
Q ss_pred eEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcc-hhhhhccccccccEEEEEEecCCeEEEEeCC
Q 038568 127 YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY-KCLESVNKAHEDAVNAVVVSDNGVVYTGSAD 203 (357)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 203 (357)
+|....+.++-+| .++++.+.|.+.++||++.. ..+..| .+|...|++..|..+..+++|+.|
T Consensus 312 -------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF-QGHtdtVTS~vF~~dd~vVSgSDD 377 (481)
T KOG0300|consen 312 -------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF-QGHTDTVTSVVFNTDDRVVSGSDD 377 (481)
T ss_pred -------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee-cccccceeEEEEecCCceeecCCC
Confidence 9999999999999 88899999999999999843 234455 899999999999999999999999
Q ss_pred CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee-eeeccCCccce
Q 038568 204 GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF-AEALWGHTGAL 282 (357)
Q Consensus 204 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v 282 (357)
.+|++||++. ...++..+. ..++++.++.+..+..++.--.+..|++||++..+.... ...-.+|...|
T Consensus 378 rTvKvWdLrN---------MRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV 447 (481)
T KOG0300|consen 378 RTVKVWDLRN---------MRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMV 447 (481)
T ss_pred ceEEEeeecc---------ccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceee
Confidence 9999999982 334555555 467899999999888999999999999999986543222 22446899999
Q ss_pred EEEeecCc----eEEEecCCCeEEEeeCCCC
Q 038568 283 LCLINVGD----LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 283 ~~~~~~~~----~l~~~~~dg~i~vw~~~~~ 309 (357)
.|++|..+ -|++++.|..+.=|.+..+
T Consensus 448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeccccCcccccccccccceeeeeEeccc
Confidence 99999876 7889999999999998865
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.4e-28 Score=204.23 Aligned_cols=254 Identities=19% Similarity=0.273 Sum_probs=196.2
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCC---ccccceeccccCCCCceEEEEE
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISD---YSHVDTFSNDLSSSGSVKSITF 80 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~---~~~~~~~~~~~~~~~~v~~l~~ 80 (357)
.+.....+|...++.-+- -.-.+..+.|. .++|||++.. .|.+||+ .. .+.+..|.. |+..++++.|
T Consensus 68 ~~~~~~~~~~~~~k~kqn--~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl-nk~~rnk~l~~f~E---H~Rs~~~ldf 141 (839)
T KOG0269|consen 68 NPNDFSEKCNHRFKTKQN--KFYSAADVKWGQLYSNLIATCSTNGVISVWDL-NKSIRNKLLTVFNE---HERSANKLDF 141 (839)
T ss_pred CcccCCcceeeecccccc--eeeehhhcccccchhhhheeecCCCcEEEEec-CccccchhhhHhhh---hccceeeeee
Confidence 334444444444443111 22345567776 8899999999 9999999 44 456667877 9999999999
Q ss_pred ecC---ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---Ce
Q 038568 81 HIT---KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GL 154 (357)
Q Consensus 81 ~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~ 154 (357)
++. .|++|+.||+|++||++..+...... +....|.++.|+| ..
T Consensus 142 h~tep~iliSGSQDg~vK~~DlR~~~S~~t~~------------------------------~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 142 HSTEPNILISGSQDGTVKCWDLRSKKSKSTFR------------------------------SNSESIRDVKFSPGYGNK 191 (839)
T ss_pred ccCCccEEEecCCCceEEEEeeeccccccccc------------------------------ccchhhhceeeccCCCce
Confidence 964 49999999999999999876543332 5667899999999 89
Q ss_pred EEEEecCCeEEEEEcCcch-hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 155 MYSVSWDRSFKIWNASNYK-CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 155 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
++++...|.+++||++... +...+ .+|.++|.|+.|+|++ +|++|+.|+.|+|||+.. ....+...+.
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~-~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~--------~~~~~~~tIn- 261 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKL-TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD--------SRAKPKHTIN- 261 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHh-hcccCceEEEeecCCCceeeecCCCccEEEEeccC--------CCccceeEEe-
Confidence 9999999999999999754 55566 8999999999999987 699999999999999861 1122222222
Q ss_pred cccceeEEEEecCCC-EEEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeC
Q 038568 233 HRSTVNALALNGDGS-LLFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQR 306 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~-~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~ 306 (357)
...+|.++.|-|... .|++++. |-.|+|||++.... +...+..|...++.++|... .+.+++.||+|..-.+
T Consensus 262 Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 262 TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred ecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--cceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 457899999999655 5666654 77899999986543 56778889999999999762 8999999999877666
Q ss_pred CCC
Q 038568 307 GKE 309 (357)
Q Consensus 307 ~~~ 309 (357)
++.
T Consensus 340 kna 342 (839)
T KOG0269|consen 340 KNA 342 (839)
T ss_pred hcc
Confidence 554
No 122
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=195.81 Aligned_cols=290 Identities=20% Similarity=0.268 Sum_probs=206.6
Q ss_pred CccceeE--EEEe-----cceEEEeeCC-ceEEEeccCCcccc---ceeccccCCCCceEEEEEecCc--eEEeecCCeE
Q 038568 28 HHMIISC--LAVH-----NSLLYAASLN-EINVFDLISDYSHV---DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKI 94 (357)
Q Consensus 28 h~~~i~~--~~~s-----~~~l~t~~~d-~i~iw~~~~~~~~~---~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i 94 (357)
|.-++.- ..|+ ...||.+.+| .|.++|. ...... +.|.....|...|.++.|.|.. |++++.|.++
T Consensus 46 ~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt-~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~ 124 (720)
T KOG0321|consen 46 DGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDT-KSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTI 124 (720)
T ss_pred CCCCCCCccccccCCCCccceEEEecCCCceeeecc-hhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCcee
Confidence 4445554 4555 5689999999 9999998 542211 2233333499999999999954 9999999999
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCc
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~ 171 (357)
++||+.+.+....- .+.+|...|.+++|.+ ..|++|+.||.|.|||++.
T Consensus 125 r~Wdvk~s~l~G~~----------------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 125 RPWDVKTSRLVGGR----------------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred eeeeeccceeecce----------------------------eecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 99999987654331 2239999999999999 8899999999999999874
Q ss_pred ch--hhhhc----c--------------------ccccc----cEEEEEEecCCeEEEEeC-CCeEEEEEcccccccccc
Q 038568 172 YK--CLESV----N--------------------KAHED----AVNAVVVSDNGVVYTGSA-DGRIRVWERSVVDHNKER 220 (357)
Q Consensus 172 ~~--~~~~~----~--------------------~~~~~----~v~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~ 220 (357)
.. ....+ . ..+.. .|+.+.|-.+..|++++. |+.|++||++........
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ 256 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc
Confidence 32 10000 0 12222 245566655557888887 999999999944332111
Q ss_pred ccceeeeeEeecc---ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---e-EEEeecCceEE
Q 038568 221 KSRHMLVTTLVKH---RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---L-LCLINVGDLLA 293 (357)
Q Consensus 221 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v-~~~~~~~~~l~ 293 (357)
. ......+..| ...+.++..+..|.+|++.+.|+.|+.|++.+...- +...+.++... + .++.+++.+++
T Consensus 257 e--p~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-P~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 257 E--PRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-PVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred C--CCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-chhhccCcccceeeeeeecCCCCceEe
Confidence 1 1111112222 345777888888899999999999999999865422 33333333322 2 44566777999
Q ss_pred EecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|+.|...++|.+.+.+ .....+.+|...|++++|.|... .-++|+++|-.+++|+
T Consensus 334 SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~------t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSAT------TPVATCSDDFRVKIWR 389 (720)
T ss_pred ccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccC------CCceeeccCcceEEEe
Confidence 99999999999999874 56777899999999999998754 2578889999999996
No 123
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.96 E-value=3.3e-27 Score=178.81 Aligned_cols=302 Identities=17% Similarity=0.258 Sum_probs=219.8
Q ss_pred ccceecccccCCCCCCCccceeEEEEe-------cceEEEeeCCceEEEeccCCc--cccceeccccCCCCceEEEEEec
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH-------NSLLYAASLNEINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHI 82 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s-------~~~l~t~~~d~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~ 82 (357)
+.+++...++. + |+.+|..++|+ ...+|+++.+.+.+|+...++ ..++.+... .|.+....++|+-
T Consensus 25 ~~yk~t~~l~e--d--~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~-d~~Esfytcsw~y 99 (385)
T KOG1034|consen 25 RSYKYTNHLKE--D--HNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADE-DHDESFYTCSWSY 99 (385)
T ss_pred cceEeeeehhc--c--CCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCC-CCCcceEEEEEEe
Confidence 44555555552 4 99999999998 467888887788999883333 344444432 3788889999984
Q ss_pred C---c---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---C
Q 038568 83 T---K---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---G 153 (357)
Q Consensus 83 ~---~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~ 153 (357)
+ + ++.++.-|.|+|.|+.+++....+. +|...|+.+.+.| +
T Consensus 100 d~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~------------------------------ghG~sINeik~~p~~~q 149 (385)
T KOG1034|consen 100 DSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR------------------------------GHGGSINEIKFHPDRPQ 149 (385)
T ss_pred cCCCCCeeEEeecceeEEEEEecchhhhcccee------------------------------ccCccchhhhcCCCCCc
Confidence 3 2 8888899999999999887665544 8999999999999 6
Q ss_pred eEEEEecCCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccc------------
Q 038568 154 LMYSVSWDRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNK------------ 218 (357)
Q Consensus 154 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~------------ 218 (357)
+++++|.|..|++||+++..++..+- .+|...|.++.|++++ +|++++.|.++++|++...+...
T Consensus 150 lvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~ 229 (385)
T KOG1034|consen 150 LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNK 229 (385)
T ss_pred EEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCC
Confidence 99999999999999999999988773 5789999999999999 79999999999999997322110
Q ss_pred ccc------cceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc-cCCc----------eeeeeeccCCccc
Q 038568 219 ERK------SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE-RDHR----------MVFAEALWGHTGA 281 (357)
Q Consensus 219 ~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~----------~~~~~~~~~~~~~ 281 (357)
+.. .......+-..|...|-|+.|- |+++++-+.++.|..|..- -.+. ...+..+.-....
T Consensus 230 t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~ 307 (385)
T KOG1034|consen 230 TTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCD 307 (385)
T ss_pred ccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccc
Confidence 000 0000111334577888888886 5699999999999999882 1111 1112222222333
Q ss_pred eE--EEeecC--ceEEEecCCCeEEEeeCCCCcceeee-eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 282 LL--CLINVG--DLLASGSADRTVRIWQRGKENCYRCM-AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 282 v~--~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+. .+++++ ++||.|...|.|.+||+++.++..+- .........|...+|+.|+. +|+...+|++|.-|
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-------~lv~vcdd~~Vwrw 380 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-------ILVLVCDDGTVWRW 380 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc-------EEEEEeCCCcEEEE
Confidence 33 334444 49999999999999999986543211 11222346799999999998 99999999999998
Q ss_pred C
Q 038568 357 D 357 (357)
Q Consensus 357 d 357 (357)
|
T Consensus 381 d 381 (385)
T KOG1034|consen 381 D 381 (385)
T ss_pred E
Confidence 7
No 124
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.9e-28 Score=193.70 Aligned_cols=246 Identities=17% Similarity=0.257 Sum_probs=181.8
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccc-eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ-HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|...|.++++.|.+ |++|+.|.+|++||+..... .+.++.+. ......|.+
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--------------------------P~E~h~i~s 219 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--------------------------PCETHQINS 219 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC--------------------------cccccccce
Confidence 88899999999988 99999999999999976432 11122111 245568999
Q ss_pred EEEec--CeEEEEecCCeEEEEEcCcchh---------hhhc--cccccccEEEEEEecCC--eEEEEeCCCeEEEEEcc
Q 038568 148 LVVKQ--GLMYSVSWDRSFKIWNASNYKC---------LESV--NKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERS 212 (357)
Q Consensus 148 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~---------~~~~--~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~ 212 (357)
++|++ +.|++.+.....+++|-...+. +..+ ..+|...++|.+|+|.. .+++++.||++|+||+.
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~ 299 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVN 299 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecC
Confidence 99999 8888888888999999543222 1111 26788999999999988 49999999999999998
Q ss_pred ccccccccccceeeeeE--eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCcc--ceEEEeec
Q 038568 213 VVDHNKERKSRHMLVTT--LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG--ALLCLINV 288 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~v~~~~~~ 288 (357)
.. ....+.+.. ..+..-+++.++|+++++.+|+|+.||.|.+|+............-..|.. .|+|+.|+
T Consensus 300 ~~------k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 300 NT------KSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred Cc------hhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 32 212222221 123456789999999999999999999999999865443333344456766 88999887
Q ss_pred Cc--eEEEecCCCeEEEeeCCCCcceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCC------CCeEEecC
Q 038568 289 GD--LLASGSADRTVRIWQRGKENCYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSL------NGEIKVWD 357 (357)
Q Consensus 289 ~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~------dg~v~~wd 357 (357)
.+ +|++-+.|+++++||+++.+ +++....+ ..-+-+.++|+|+.+ +|+||.. .|.+.+||
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~tdc~FSPd~k-------li~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFK--KPLNVRTGLPTPFPGTDCCFSPDDK-------LILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred cccchhhhccCCCceeeeeccccc--cchhhhcCCCccCCCCccccCCCce-------EEEecccccCCCCCceEEEEe
Confidence 66 99999999999999999864 44444333 234567899999998 8888863 34555554
No 125
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=5.8e-26 Score=181.47 Aligned_cols=281 Identities=15% Similarity=0.242 Sum_probs=218.3
Q ss_pred CccceeEEEEe----cceEEEee--CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH----NSLLYAAS--LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s----~~~l~t~~--~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd 98 (357)
....|+|++|+ |.+|+.-. .+ .+.+||. +.+........ .++.|....|+|.. |+.....+.+.+|+
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~---sne~v~~a~FHPtd~nliit~Gk~H~~Fw~ 228 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKT---SNEVVFLATFHPTDPNLIITCGKGHLYFWT 228 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCccee---ccceEEEEEeccCCCcEEEEeCCceEEEEE
Confidence 66789999999 67776654 44 8999999 77777777766 77889999999965 44444558999999
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
++.+...+....+.. .....|.|++|.+ .-+++|..+|.|.||+..+.+..+.
T Consensus 229 ~~~~~l~k~~~~fek--------------------------~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEK--------------------------REKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred ccCCceEEEeecccc--------------------------ccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeE
Confidence 998877666655542 2236799999999 8999999999999999988888888
Q ss_pred ccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccc--c----------------------------cceeee
Q 038568 178 VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKER--K----------------------------SRHMLV 227 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~----------------------------~~~~~~ 227 (357)
. ..|.+.|.+++...+|.|++|+.|+.|..||-......+.. + ......
T Consensus 283 ~-~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 283 V-HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred e-eecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 7 59999999999999999999999999999993221111000 0 011112
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeC
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQR 306 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~ 306 (357)
....+|......++.+|+...+++++.|+.+++|+ ..+. ..... -..++.|+.|+|. .+|.|...|...+.|.
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~--~wt~~--~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKL--EWTKI--IEDPAECADFHPSGVVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCce--eEEEE--ecCceeEeeccCcceEEEeeccceEEEEec
Confidence 23456778889999999999999999999999999 2222 11222 2455677777766 9999999999999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++. ..+..... +.+++.+.|+|++. +||.|+.|+.|.+|
T Consensus 436 e~~---~lv~~~~d-~~~ls~v~ysp~G~-------~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 436 ETQ---DLVTIHTD-NEQLSVVRYSPDGA-------FLAVGSHDNHIYIY 474 (626)
T ss_pred ccc---eeEEEEec-CCceEEEEEcCCCC-------EEEEecCCCeEEEE
Confidence 984 33433333 88999999999999 99999999999987
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.9e-27 Score=177.94 Aligned_cols=245 Identities=20% Similarity=0.383 Sum_probs=196.0
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCc---cccceeccccCCCCceEEEEEecCc--e
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDY---SHVDTFSNDLSSSGSVKSITFHITK--I 85 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~--l 85 (357)
...+++|-. |.+.|+++.|. ...|++|+.| +|++||+ ... +..+.|+ ...+|.+|.|+|.+ |
T Consensus 162 hPvIRTlYD-----H~devn~l~FHPre~ILiS~srD~tvKlFDf-sK~saKrA~K~~q----d~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 162 HPVIRTLYD-----HVDEVNDLDFHPRETILISGSRDNTVKLFDF-SKTSAKRAFKVFQ----DTEPVRSISFHPSGEFL 231 (430)
T ss_pred CceEeehhh-----ccCcccceeecchhheEEeccCCCeEEEEec-ccHHHHHHHHHhh----ccceeeeEeecCCCceE
Confidence 356667765 99999999999 8899999999 9999999 442 2334454 67899999999988 8
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCe
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRS 163 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~ 163 (357)
+.|..-.++++||+++-+........ ..|.+.|+++.+++ ++.++++.||.
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd---------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPD---------------------------DQHTGAITQVRYSSTGSLYVTASKDGA 284 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcc---------------------------cccccceeEEEecCCccEEEEeccCCc
Confidence 88888899999999987654333221 28999999999999 89999999999
Q ss_pred EEEEEcCcchhhhhcccccc-ccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-----ccc
Q 038568 164 FKIWNASNYKCLESVNKAHE-DAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-----RST 236 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 236 (357)
|++||--+++|+.++...|. ..|.+..|..++ ++++.+.|..+++|.+. ...++..+.+. ..-
T Consensus 285 IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~----------t~R~l~~YtGAg~tgrq~~ 354 (430)
T KOG0640|consen 285 IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS----------TGRMLKEYTGAGTTGRQKH 354 (430)
T ss_pred EEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec----------CCceEEEEecCCcccchhh
Confidence 99999999999999977775 478889999999 59999999999999998 34455544432 111
Q ss_pred eeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 237 VNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
-+...|+....+++.-.+ .+.+.-||.++..+... ...+|.+.+.++..+|. .+++|+.|..+|+|--+
T Consensus 355 rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 355 RTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 234567777777776654 56799999998876433 23489999999999887 89999999999999654
No 127
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=182.82 Aligned_cols=291 Identities=17% Similarity=0.220 Sum_probs=207.5
Q ss_pred ccceecccccCCCCCCCccceeEEEEe---c-ceEEEeeCC-ceEEEeccCC----ccccceeccccCCCCceEEEEEec
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH---N-SLLYAASLN-EINVFDLISD----YSHVDTFSNDLSSSGSVKSITFHI 82 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s---~-~~l~t~~~d-~i~iw~~~~~----~~~~~~~~~~~~~~~~v~~l~~~~ 82 (357)
.........+. |.+.|++++|. . +++|+|... +|-+||+ .+ ...+..+.. |..+|.+|.|+|
T Consensus 174 ~~~~~~~v~kv-----~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~-~~~~~d~d~v~~f~~---hs~~Vs~l~F~P 244 (498)
T KOG4328|consen 174 DDYRILNVAKV-----TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNF-GTQEKDKDGVYLFTP---HSGPVSGLKFSP 244 (498)
T ss_pred ccceecceeEe-----cccceEEEEecccCcceEEEEccCCCcEEEEec-CCCCCccCceEEecc---CCccccceEecC
Confidence 34445555665 88999999999 3 678888877 9999999 42 223344554 999999999998
Q ss_pred Cc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE
Q 038568 83 TK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS 157 (357)
Q Consensus 83 ~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~ 157 (357)
.. +++.+.||+|+.-|++.......+..- .....+.++.|+. ..++.
T Consensus 245 ~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~----------------------------~d~~~fs~~d~~~e~~~vl~ 296 (498)
T KOG4328|consen 245 ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD----------------------------TDNIWFSSLDFSAESRSVLF 296 (498)
T ss_pred CChhheeeeccCceeeeeeecchhhHHHhhcC----------------------------ccceeeeeccccCCCccEEE
Confidence 64 999999999999999876432222110 1234566777777 66667
Q ss_pred EecCCeEEEEEcCcchh-hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 158 VSWDRSFKIWNASNYKC-LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
+..=|...+||.+++.. ...+ .-|...|..++++|.. .|++++.|++++|||++.... ...+......|.
T Consensus 297 ~~~~G~f~~iD~R~~~s~~~~~-~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~------K~sp~lst~~Hr 369 (498)
T KOG4328|consen 297 GDNVGNFNVIDLRTDGSEYENL-RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG------KASPFLSTLPHR 369 (498)
T ss_pred eecccceEEEEeecCCccchhh-hhhhcccceeecCCCCchheeecccCcceeeeehhhhcC------CCCcceeccccc
Confidence 77667999999998765 4444 6788899999999977 599999999999999994332 222344556799
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecc----cCCceeeeeeccCCccc--eEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERE----RDHRMVFAEALWGHTGA--LLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~~~~--v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
..|.+..|+|.+..|++.+.|..|+|||.. .......+..-..+... .....|+|+ ++++|..-..|-|+|-
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDG 449 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcC
Confidence 999999999988779999999999999984 22221122111111111 233467776 8999999999999998
Q ss_pred CCCcceeeeeeecCCcC-ceEEE-EEeeCCCCCCCCeEEEEEcC-CCCeEEec
Q 038568 307 GKENCYRCMAFLEGHEK-PVKSL-VAISSSSSASNGIVSIGSGS-LNGEIKVW 356 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~-~v~~~-~~~~~~~~~~~~~~~l~s~~-~dg~v~~w 356 (357)
+.+ +.+..+..... .|.++ .|+|-.. .+++|+ ..|.|.||
T Consensus 450 ~~~---q~v~el~~P~~~tI~~vn~~HP~~~-------~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 450 NGG---QMVCELHDPESSTIPSVNEFHPMRD-------TLAAGGNSSGKIYVF 492 (498)
T ss_pred CCC---EEeeeccCccccccccceeeccccc-------ceeccCCccceEEEE
Confidence 876 54555443332 45544 7899875 455554 77888887
No 128
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.8e-27 Score=184.51 Aligned_cols=250 Identities=22% Similarity=0.321 Sum_probs=194.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-.++|.|++-+ |.+|+.|+.. .|++|.+ .+|..+..+.. |-..|+|+.|+.|+ |+||+.||.|.+|.+..-
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWel-ssG~LL~v~~a---HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWEL-SSGILLNVLSA---HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEe-ccccHHHHHHh---hccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 35789999888 8888888777 9999999 99999999988 99999999999987 999999999999997531
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+...+.. .......|..|.-+|+++...+ .++++++.|.++++||+..+..+.++
T Consensus 156 -----v~a~~~~----------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 156 -----VSADNDH----------------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred -----cccccCC----------------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 1111000 1111245569999999999887 79999999999999999999988887
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccc------cccccceeeeeEeecccc--ceeEEEEecCCCEE
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHN------KERKSRHMLVTTLVKHRS--TVNALALNGDGSLL 249 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l 249 (357)
.....+.+++.+|-+ .+++|+.+|.|.+.++.....+ +...........+.+|.+ +|+|++++-||..|
T Consensus 215 --~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlL 292 (476)
T KOG0646|consen 215 --TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLL 292 (476)
T ss_pred --ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEE
Confidence 778899999999988 5999999999999988643321 122234455667788888 99999999999999
Q ss_pred EEEecCCeEEEEecccCCceeeeeeccCCccceEEEee---cCceEEEecCCCeEEEeeCC
Q 038568 250 FSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN---VGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 250 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~vw~~~ 307 (357)
++|+.||.++|||+.+.+.+ +++....++|+-+.+ .+..+..-.....+-.|++.
T Consensus 293 lSGd~dg~VcvWdi~S~Q~i---Rtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 293 LSGDEDGKVCVWDIYSKQCI---RTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred EeeCCCCCEEEEecchHHHH---HHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 99999999999999987743 444435677777766 33444433334445555543
No 129
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.5e-28 Score=204.07 Aligned_cols=246 Identities=23% Similarity=0.369 Sum_probs=208.8
Q ss_pred eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 41 LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+++..... .+++|+. .. +.. |...|.++..-... +++|+.|..+-+|.+........+
T Consensus 6 ~~m~~~~~t~Lr~~~~-~~------~~~---hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~--------- 66 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDT-RE------FVA---HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSL--------- 66 (825)
T ss_pred ccceeeeeeccccccc-hh------hhh---hhhhhceeeeeccceeeccCCCceeeccccccCCchhhee---------
Confidence 34455566 7888887 32 233 77888888764333 999999999999998765433322
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG 195 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 195 (357)
.+|..+|.++.|+. .+|++|+.+|+|++||++..+.+.++ .+|...+.++.|+|-+
T Consensus 67 ---------------------~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtL-tgh~~~~~sv~f~P~~ 124 (825)
T KOG0267|consen 67 ---------------------TGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTL-TGHLLNITSVDFHPYG 124 (825)
T ss_pred ---------------------eccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhh-hccccCcceeeeccce
Confidence 29999999999999 88999999999999999999999999 8999999999999998
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA 274 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 274 (357)
+++.|+.|+.+++||++ ...+...+.+|...|..+.|+|+|++++.|++|..++|||+..++ ....
T Consensus 125 ~~~a~gStdtd~~iwD~R----------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk---~~~e 191 (825)
T KOG0267|consen 125 EFFASGSTDTDLKIWDIR----------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK---LSKE 191 (825)
T ss_pred EEeccccccccceehhhh----------ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc---cccc
Confidence 58899999999999998 556778888899999999999999999999999999999999887 5667
Q ss_pred ccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 275 LWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 275 ~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+..|.+.+..+.+++. ++++|+.|+++++||+++- +.+.........|.+..|+|++. .+.+|..+
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~-------~~~~G~q~ 259 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGK-------IVLSGEQI 259 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCce-------eeecCchh
Confidence 8889999999999987 8899999999999999974 67777777788999999999997 77776544
No 130
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.5e-26 Score=192.36 Aligned_cols=280 Identities=18% Similarity=0.259 Sum_probs=208.4
Q ss_pred ceeEEEEecceEEEeeCC-ceEEEeccCCccccceecccc------------CC---------CCceEEEEEecCc--eE
Q 038568 31 IISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDL------------SS---------SGSVKSITFHITK--IF 86 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~------------~~---------~~~v~~l~~~~~~--l~ 86 (357)
..+|++.+.++|++|..+ .|++|+. .+...+.++.... .| -....++.|.+.. |.
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp-~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~kls 340 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNP-ETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLS 340 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCc-chhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEE
Confidence 357888889999999999 9999998 7655444443211 00 0123467788654 88
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-------------C
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-------------G 153 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------~ 153 (357)
+.-.|..+.|||++..........+ .-|...|+++.-.| .
T Consensus 341 cVYndhSlYvWDvrD~~kvgk~~s~---------------------------lyHS~ciW~Ve~~p~nv~~~~~aclp~~ 393 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVGKCSSM---------------------------LYHSACIWDVENLPCNVHSPTAACLPRG 393 (1080)
T ss_pred EEEcCceEEEEeccccccccceeee---------------------------eeccceeeeeccccccccCcccccCCcc
Confidence 8899999999999876544333222 14555555554322 6
Q ss_pred eEEEEecCCeEEEEEcCcchhhhh------------c------------------------cccccccEEEEEEecCC-e
Q 038568 154 LMYSVSWDRSFKIWNASNYKCLES------------V------------------------NKAHEDAVNAVVVSDNG-V 196 (357)
Q Consensus 154 ~l~~~~~dg~i~iwd~~~~~~~~~------------~------------------------~~~~~~~v~~~~~~~~~-~ 196 (357)
.+.+++.|++|++||+..+..-.. + .......+.+++++|++ +
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 799999999999999875210000 0 01233568999999999 5
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec---CCCEEEEEecCCeEEEEecccCCceeeee
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG---DGSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
|++|..-|.+++|++. .......+..|...|.|+.|+. ..++|++++.|..|+|||..... .+..
T Consensus 474 LAsGDr~GnlrVy~Lq----------~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny--~l~q 541 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQ----------ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY--DLVQ 541 (1080)
T ss_pred ecccCccCceEEEEeh----------hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc--chhh
Confidence 9999999999999998 5566777889999999999986 44689999999999999986433 2445
Q ss_pred eccCCccceEEEeec-------------------------------------------------Cc--eEEEecCCCeEE
Q 038568 274 ALWGHTGALLCLINV-------------------------------------------------GD--LLASGSADRTVR 302 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~-------------------------------------------------~~--~l~~~~~dg~i~ 302 (357)
++.+|...|+++.|. |. ++++++.|..|+
T Consensus 542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 555666655554432 33 889999999999
Q ss_pred EeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 303 IWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
||+++++++.+.++--++|.+..-.+...|.+- ||++...|.++.++|
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgi-------Y~atScsdktl~~~D 669 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGI-------YLATSCSDKTLCFVD 669 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCcc-------EEEEeecCCceEEEE
Confidence 999999976666666677888888999999998 999999999999986
No 131
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.9e-27 Score=203.17 Aligned_cols=237 Identities=18% Similarity=0.288 Sum_probs=192.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC------------------ccccceeccccCCCCceEEEEEecCc--
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD------------------YSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~------------------~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
|.+.|+|+.|+ |++||+|++| .|.||+. .. .+.+..+.+ |...|..++|+|+.
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~-~~~~~~~~fgs~g~~~~vE~wk~~~~l~~---H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWER-AEIGSGTVFGSTGGAKNVESWKVVSILRG---HDSDVLDVNWSPDDSL 143 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeee-cccCCcccccccccccccceeeEEEEEec---CCCccceeccCCCccE
Confidence 99999999999 9999999999 9999998 41 124566777 99999999999987
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
|++++.|++|.+|+..+.+....+ .+|.+.|..+.|.| ++|++-+.|+
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl------------------------------~~H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVL------------------------------RGHQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred EEEecccceEEEEccccceeeeee------------------------------ecccccccceEECCccCeeeeecCCc
Confidence 999999999999999887544433 39999999999999 9999999999
Q ss_pred eEEEEEcCcchhhhhccc-----cccccEEEEEEecCCe-EEEEeC----CCeEEEEEccccccccccccceeeeeEeec
Q 038568 163 SFKIWNASNYKCLESVNK-----AHEDAVNAVVVSDNGV-VYTGSA----DGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+|++|++.+....+.+.. .....+..+.|+|||. |++... -..+.|.+-. ..+.-..+.+
T Consensus 194 tikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~----------tWk~~~~LvG 263 (942)
T KOG0973|consen 194 TLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERG----------TWKVDKDLVG 263 (942)
T ss_pred eEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecC----------Cceeeeeeec
Confidence 999999877555554421 2345678999999994 655432 3456676654 5666778899
Q ss_pred cccceeEEEEec-----CCC------------EEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEE
Q 038568 233 HRSTVNALALNG-----DGS------------LLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLA 293 (357)
Q Consensus 233 ~~~~v~~~~~~~-----~~~------------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 293 (357)
|..++.++.|+| ..+ .+|+|+.|++|.||.....+++..+..+. ...|..++|+++ .|+
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf--~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF--NKSIVDMSWSPDGFSLF 341 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh--cCceeeeeEcCCCCeEE
Confidence 999999999998 112 68899999999999998777765555543 457899999987 899
Q ss_pred EecCCCeEEEeeCCCCc
Q 038568 294 SGSADRTVRIWQRGKEN 310 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~ 310 (357)
+++.||+|.+..++..+
T Consensus 342 acS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 342 ACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCeEEEEEcchHH
Confidence 99999999999997643
No 132
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=6e-27 Score=180.46 Aligned_cols=240 Identities=20% Similarity=0.316 Sum_probs=181.1
Q ss_pred CccceeEEEEe--cc--eEEEeeCC-ceEEEeccCC---------------ccccceeccccCCCCceEEEEEecC--c-
Q 038568 28 HHMIISCLAVH--NS--LLYAASLN-EINVFDLISD---------------YSHVDTFSNDLSSSGSVKSITFHIT--K- 84 (357)
Q Consensus 28 h~~~i~~~~~s--~~--~l~t~~~d-~i~iw~~~~~---------------~~~~~~~~~~~~~~~~v~~l~~~~~--~- 84 (357)
|.+.|+.+.-+ ++ +.|+=+.. .|.||++... .+++.++.+ |...=+.|+|+|- +
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g---hk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG---HKGEGYGLDWSPIKTGR 226 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc---cCccceeeecccccccc
Confidence 77788887776 43 44444455 9999998311 345666666 8888899999994 3
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWD 161 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d 161 (357)
|++|..-+.|++|...++........+ .+|...|-.++|+| ..|++|+.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf---------------------------~gH~~SVEDLqWSptE~~vfaScS~D 279 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPF---------------------------TGHTKSVEDLQWSPTEDGVFASCSCD 279 (440)
T ss_pred cccCccccceEeeeeccCceeecCccc---------------------------cccccchhhhccCCccCceEEeeecC
Confidence 999999999999999887654333332 38999999999999 899999999
Q ss_pred CeEEEEEcCcchhhh-hccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 162 RSFKIWNASNYKCLE-SVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 162 g~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
|+|+|||++.+.... .+...|...|+.|.|+... .|++|+.||+++|||+|.. + ..+++..++-|..+|++
T Consensus 280 gsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------~-~~~pVA~fk~Hk~pIts 352 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------K-SGQPVATFKYHKAPITS 352 (440)
T ss_pred ceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------c-CCCcceeEEeccCCeeE
Confidence 999999999873222 2227899999999999776 6999999999999999933 2 23788899999999999
Q ss_pred EEEec-CCCEEEEEecCCeEEEEecccCCce-------------eeeeeccCC--ccceEEEeecCc---eEEEecCCCe
Q 038568 240 LALNG-DGSLLFSGGCDRWIVVWERERDHRM-------------VFAEALWGH--TGALLCLINVGD---LLASGSADRT 300 (357)
Q Consensus 240 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~--~~~v~~~~~~~~---~l~~~~~dg~ 300 (357)
+.|+| +...|++++.|.+|.+||+.-.... .+.+-+.-| ...+..+.|++. +|++.+.||
T Consensus 353 ieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG- 431 (440)
T KOG0302|consen 353 IEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG- 431 (440)
T ss_pred EEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-
Confidence 99999 4568889999999999998632210 001112223 234566777755 889988888
Q ss_pred EEEee
Q 038568 301 VRIWQ 305 (357)
Q Consensus 301 i~vw~ 305 (357)
+.||.
T Consensus 432 fnVfk 436 (440)
T KOG0302|consen 432 FNVFK 436 (440)
T ss_pred eeEEE
Confidence 55553
No 133
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.9e-26 Score=179.84 Aligned_cols=281 Identities=15% Similarity=0.235 Sum_probs=217.0
Q ss_pred CCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC--ccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEE
Q 038568 25 PDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRV 96 (357)
Q Consensus 25 g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~v 96 (357)
++|-.+.|+++.|+ ..+|++|+.| .++||.+ +. ...++.+.- ..-+|.+..|.|++ +++++....+..
T Consensus 209 ~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqv-DGk~N~~lqS~~l---~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 209 AHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQV-DGKVNPKLQSIHL---EKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CCcCcCCceEEEecCCCceEEEecCCCcEEEEEe-cCccChhheeeee---ccCccceeeecCCCceEEEecccceEEEE
Confidence 45567899999999 7899999999 9999998 44 234555554 67899999999987 899999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc-cccEEEEEEec--CeEEEEecCCeEEEEEcCcch
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH-WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 173 (357)
||+.+.+..+ +.... ++ ...+..+..++ ++|+..+..|.|.+....+++
T Consensus 285 yDle~ak~~k-~~~~~---------------------------g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e 336 (514)
T KOG2055|consen 285 YDLETAKVTK-LKPPY---------------------------GVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE 336 (514)
T ss_pred eecccccccc-ccCCC---------------------------CcccchhheeEecCCCCeEEEcccCceEEeehhhhhh
Confidence 9998876432 22111 22 23455566666 899999999999999999999
Q ss_pred hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce--eEEEEecCCCEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV--NALALNGDGSLLF 250 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~ 250 (357)
.+..+ ...+.+..++|+.++ .|++++.+|.|.+||++ ...++..+.. .+.| ++++.++++.+||
T Consensus 337 li~s~--KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~----------~~~~~~rf~D-~G~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 337 LITSF--KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR----------QNSCLHRFVD-DGSVHGTSLCISLNGSYLA 403 (514)
T ss_pred hhhee--eeccEEeeEEEecCCcEEEEEcCCceEEEEecC----------CcceEEEEee-cCccceeeeeecCCCceEE
Confidence 99998 677889999999999 48888899999999998 3355555543 3333 5677778999999
Q ss_pred EEecCCeEEEEeccc---CCceeeeeeccCCccceEEEeecCc--eEEEec--CCCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 251 SGGCDRWIVVWERER---DHRMVFAEALWGHTGALLCLINVGD--LLASGS--ADRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
+|+..|.|.|||.++ ...+.++..+..-...|..+.|+++ .||.++ .+..+|+-.+.+...+.........-+
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG 483 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc
Confidence 999999999999753 2333455666667778999999988 555444 578899998887533333333334446
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|+|++|+|.+. +||.|-.+|+|.+|.
T Consensus 484 ~vtc~aFSP~sG-------~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 484 HVTCMAFSPNSG-------YLAVGNEAGRVHLFK 510 (514)
T ss_pred ceEEEEecCCCc-------eEEeecCCCceeeEe
Confidence 799999999988 999999999999993
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=183.35 Aligned_cols=203 Identities=20% Similarity=0.335 Sum_probs=165.9
Q ss_pred cccccEEEEEEec----CeEEEEecCCeEEEEEcCc----------------chhhhhccccccccEEEEEEec--CCeE
Q 038568 140 EHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASN----------------YKCLESVNKAHEDAVNAVVVSD--NGVV 197 (357)
Q Consensus 140 ~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~--~~~l 197 (357)
.|.+.++.+...+ .+.++-+..|.|.|||+.. .+++.++ .+|...-..++|+| .|.|
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccccccc
Confidence 5666676666655 5677778899999999753 2345556 77888889999999 4579
Q ss_pred EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-CCEEEEEecCCeEEEEecccCCceeeeeecc
Q 038568 198 YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-GSLLFSGGCDRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 198 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
++|..-+.|++|... ++. -..-...+.+|...|..|+|+|. ...|++|+.||+|+|||++.+.....+.. .
T Consensus 228 lsGDc~~~I~lw~~~------~g~-W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPS------TGS-WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred ccCccccceEeeeec------cCc-eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence 999999999999987 211 12223456679999999999994 45899999999999999998854434433 7
Q ss_pred CCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 277 GHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 277 ~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
.|.+.|..++|+.+ +||+|+.||+++|||+++-+..++++.++.|..+|++|.|+|... ..|+++|.|.+|.
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------s~iaasg~D~Qit 373 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------SVIAASGEDNQIT 373 (440)
T ss_pred ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------ceEEeccCCCcEE
Confidence 89999999999987 899999999999999998777788999999999999999999765 3788889999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+||
T Consensus 374 iWD 376 (440)
T KOG0302|consen 374 IWD 376 (440)
T ss_pred EEE
Confidence 998
No 135
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.1e-27 Score=183.34 Aligned_cols=229 Identities=17% Similarity=0.281 Sum_probs=179.2
Q ss_pred cceEEEeeCC-ceEEEeccCCcc---ccceec---------------cccCCCCceEEEEEecCc---eEEeecCCeEEE
Q 038568 39 NSLLYAASLN-EINVFDLISDYS---HVDTFS---------------NDLSSSGSVKSITFHITK---IFTAHQDCKIRV 96 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~---~~~~~~---------------~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~v 96 (357)
|+++|.|..| .|.|||+ +-.. +...+. ...+|+..|.+|+|+... |++||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDL-DI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDL-DIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEecc-ccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 7899999999 9999998 3211 111110 112488999999999754 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcch
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 173 (357)
||+.+++....+. .|...|.++.|+| ..|++|+.|+++.+.|.+...
T Consensus 271 WD~~~g~p~~s~~------------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 271 WDVDTGKPKSSIT------------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred EEcCCCCcceehh------------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 9999998765553 6889999999999 899999999999999998533
Q ss_pred hhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-CCEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-GSLLF 250 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 250 (357)
..... -...+.|-.++|.|.. .++++..||.|+-+|+| ...+++.+++.|..+|.++++++. ..+++
T Consensus 321 ~s~~~-wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R---------~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~ 390 (463)
T KOG0270|consen 321 NSGKE-WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIR---------NPGKPVWTLKAHDDEISGLSVNIQTPGLLS 390 (463)
T ss_pred ccCce-EEeccceEEEEecCCCceeEEEecCCceEEeeecC---------CCCCceeEEEeccCCcceEEecCCCCccee
Confidence 32222 2456789999999977 58999999999999999 244789999999999999999984 45889
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCC
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~ 309 (357)
+++.|+.|++|++...... ......-.-+...|+++.++ .++.|+..+.++|||+.+.
T Consensus 391 t~s~d~~Vklw~~~~~~~~-~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 391 TASTDKVVKLWKFDVDSPK-SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred eccccceEEEEeecCCCCc-ccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 9999999999999754421 11111111223567777777 8999999999999999876
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.7e-26 Score=171.31 Aligned_cols=281 Identities=15% Similarity=0.249 Sum_probs=205.9
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA 88 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~ 88 (357)
-++..+|+ |.. ..|+.|+ |.+||+|..| .|.|||+ .+...-+.+.+ |..+|++++|++++ |+|+
T Consensus 15 Eel~~tld------~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~-~T~~iar~lsa---H~~pi~sl~WS~dgr~Llts 83 (405)
T KOG1273|consen 15 EELTHTLD------NPL-AECCQFSRWGDYLAVGCANGRVVIYDF-DTFRIARMLSA---HVRPITSLCWSRDGRKLLTS 83 (405)
T ss_pred Hhhceecc------CCc-cceEEeccCcceeeeeccCCcEEEEEc-cccchhhhhhc---cccceeEEEecCCCCEeeee
Confidence 34555666 444 8899999 9999999999 9999999 99888888988 99999999999998 9999
Q ss_pred ecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEE
Q 038568 89 HQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFK 165 (357)
Q Consensus 89 ~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~ 165 (357)
+.|..|.+||+..+.....+ ...++|+...|+| +..++.-.+..-.
T Consensus 84 S~D~si~lwDl~~gs~l~ri-------------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 84 SRDWSIKLWDLLKGSPLKRI-------------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred cCCceeEEEeccCCCceeEE-------------------------------EccCccceeeeccccCCeEEEEEecCCcE
Confidence 99999999999999866665 3467899999999 5555554455555
Q ss_pred EEEcCcch--hhhhcccc-ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc-cceeEE
Q 038568 166 IWNASNYK--CLESVNKA-HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR-STVNAL 240 (357)
Q Consensus 166 iwd~~~~~--~~~~~~~~-~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 240 (357)
+-++..++ ++..-..+ ....-.+..|.+.| ++++|...|.+.++|.. ..+++..++... ..|..+
T Consensus 133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~----------t~e~vas~rits~~~IK~I 202 (405)
T KOG1273|consen 133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE----------TLECVASFRITSVQAIKQI 202 (405)
T ss_pred EEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc----------hheeeeeeeechheeeeEE
Confidence 55554421 11111000 11112233577777 69999999999999987 445666666555 788999
Q ss_pred EEecCCCEEEEEecCCeEEEEecccCC------ceeeeeeccC--CccceEEEeecCc--eEEEec-CCCeEEEeeCCCC
Q 038568 241 ALNGDGSLLFSGGCDRWIVVWERERDH------RMVFAEALWG--HTGALLCLINVGD--LLASGS-ADRTVRIWQRGKE 309 (357)
Q Consensus 241 ~~~~~~~~l~~~~~dg~i~vwd~~~~~------~~~~~~~~~~--~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~~~ 309 (357)
.++..|+.|+.-+.|..||.|+++.-. .+.+...+.. .+..=.++.|+++ |+++++ .-..++||....|
T Consensus 203 ~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G 282 (405)
T KOG1273|consen 203 IVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG 282 (405)
T ss_pred EEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc
Confidence 999999999999999999999987321 1111111111 0111134455555 666555 4568999999988
Q ss_pred cceeeeeeecCCc-CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 310 NCYRCMAFLEGHE-KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 310 ~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+++.+.|.. .....+.|+|-.+ .+++- ..|.|++|.
T Consensus 283 ---sLVKILhG~kgE~l~DV~whp~rp-------~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 283 ---SLVKILHGTKGEELLDVNWHPVRP-------IIASI-ASGVVYIWA 320 (405)
T ss_pred ---ceeeeecCCchhheeeccccccee-------eeeec-cCCceEEEE
Confidence 7778888877 6688999999987 78877 688999994
No 137
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-26 Score=181.15 Aligned_cols=256 Identities=17% Similarity=0.191 Sum_probs=187.4
Q ss_pred CceEEEEEec---------CceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc
Q 038568 73 GSVKSITFHI---------TKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD 143 (357)
Q Consensus 73 ~~v~~l~~~~---------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
....|++|.. +.+|.|+.|..|.|||+.-.......-.+..... ......+.+...-.+|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~s---------k~~~k~~k~~~~~~gHTd 244 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKAS---------KKKKKKGKRSNSASGHTD 244 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhh---------hhhhhhcccccccccchH
Confidence 4446777762 2399999999999999874432222211110000 000000111122247999
Q ss_pred cEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccc
Q 038568 144 AVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 144 ~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
.|.++.|+. +.||+|+.|.+|++||+.++++...+ ..|...|.++.|+|.. .|++|+.|++|.+.|.|.
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~----- 318 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD----- 318 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCceEEEeccccceEEeeeccC-----
Confidence 999999998 89999999999999999999999999 7899999999999976 599999999999999982
Q ss_pred ccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~ 294 (357)
.......-.-.+.|..++|.| ....++++..||+|+-+|++.... ++.++..|..+|.++++++. ++++
T Consensus 319 -----~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~--~vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 319 -----PSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK--PVWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred -----ccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCC--ceeEEEeccCCcceEEecCCCCcceee
Confidence 111111122457789999999 445788888999999999998753 66778889999999998765 9999
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++.|+.|++|++..... +.+....-.-+...|.++.|+-. ..++.||..+.+++||
T Consensus 392 ~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a------~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVA------FTLAFGGEKAVLRVWD 447 (463)
T ss_pred ccccceEEEEeecCCCC-cccccccccccceeecccCCCcc------eEEEecCccceEEEee
Confidence 99999999999975421 22222221223466777777765 4788999999999997
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=188.14 Aligned_cols=313 Identities=19% Similarity=0.273 Sum_probs=232.6
Q ss_pred ccccceecccccCCCCCCCc-cceeEEEEe--c-ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 10 EAFKHHCIASLKIPSPDPHH-MIISCLAVH--N-SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~-~~i~~~~~s--~-~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
+....+.+.+++ |. ++|+.++|. | ..+|+|+.. .+.+||+ +..+.+..++. .|.+.|..+.|.|..
T Consensus 230 NlK~dkil~sFk------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDL-e~kkl~~v~~n--ah~~sv~~~~fl~~e 300 (910)
T KOG1539|consen 230 NLKFDKILMSFK------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDL-EKKKLINVTRN--AHYGSVTGATFLPGE 300 (910)
T ss_pred EcccCcEEEEEE------ccccceeEEEeccCCCeeEEeccCCceEEEEEc-CCCeeeeeeec--cccCCcccceecCCC
Confidence 445677888898 75 999999998 5 466777776 9999999 77666666652 289999999999988
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeec-Cc------------cccceeeeecCC------------------------
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTL-PT------------VKDRLIRSVLPN------------------------ 125 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~------------------------ 125 (357)
+++++.|+.+++|=.+++.....+-.. .+ ...........+
T Consensus 301 pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~ 380 (910)
T KOG1539|consen 301 PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKK 380 (910)
T ss_pred ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccc
Confidence 999999999999976643321110000 00 000000000000
Q ss_pred --------------------------------CeEEEecc---------cc----------cccccccccEEEEEEec--
Q 038568 126 --------------------------------NYVTVRRH---------KK----------RLWLEHWDAVSDLVVKQ-- 152 (357)
Q Consensus 126 --------------------------------~~~~~~~~---------~~----------~~~~~~~~~v~~~~~~~-- 152 (357)
+.+..... .. ..++.....+++++.++
T Consensus 381 ~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CG 460 (910)
T KOG1539|consen 381 RAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCG 460 (910)
T ss_pred ccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccC
Confidence 00000000 00 00111235778888888
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhc--cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeE
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESV--NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT 229 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 229 (357)
++.+.|+..|.|-+|++.+|-....+ ...|..+|+.++...-+ .+++++.+|.+++||.. ...++..
T Consensus 461 NF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~----------~k~l~~~ 530 (910)
T KOG1539|consen 461 NFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK----------KKVLKKS 530 (910)
T ss_pred ceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC----------Ccceeee
Confidence 89999999999999999999887777 35899999999998766 59999999999999987 3334444
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
+. -...+.++.++.....++.+..|-.|+++|..+.+ ..+.+.+|.+.++.++|+++ +|++++.|++|++||+.
T Consensus 531 l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k---vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 531 LR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK---VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh---hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence 43 45678888888888899999999999999999776 66788999999999999987 99999999999999999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC-CeEEec
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN-GEIKVW 356 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-g~v~~w 356 (357)
++ .++..+. -..+.+++.|+|++. +|||...| .-|++|
T Consensus 607 t~---~lID~~~-vd~~~~sls~SPngD-------~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 607 TG---TLIDGLL-VDSPCTSLSFSPNGD-------FLATVHVDQNGIYLW 645 (910)
T ss_pred Cc---ceeeeEe-cCCcceeeEECCCCC-------EEEEEEecCceEEEE
Confidence 98 4444333 367899999999999 99999988 568888
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-25 Score=183.12 Aligned_cols=239 Identities=15% Similarity=0.281 Sum_probs=193.5
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
...+|.+|||+... ||.+-.||.|-+|++...=.....-.. +....|.++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g----------------------------~~drsIE~L 75 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHG----------------------------PEDRSIESL 75 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEec----------------------------CCCCceeeE
Confidence 56789999999654 999999999999999875322222111 445789999
Q ss_pred EEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 149 VVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 149 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+|.+ ..|++.+.+|.|.-||+.+++++..+ ....+.|.+++.+|.+ .++.|+.||.+..++.. ......
T Consensus 76 ~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~--------p~~I~~ 146 (691)
T KOG2048|consen 76 AWAEGGRLFSSGLSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG--------PDKITY 146 (691)
T ss_pred EEccCCeEEeecCCceEEEEecccCceeEEe-cCCCcceeEEEeCCccceEEeecCCceEEEEecC--------CceEEE
Confidence 9998 99999999999999999999999998 8889999999999988 59999999977777765 122333
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeee----ecc-CCccceEEEeecC-ceEEEecCCCe
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAE----ALW-GHTGALLCLINVG-DLLASGSADRT 300 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~-~~~~~v~~~~~~~-~~l~~~~~dg~ 300 (357)
...+....+.|.+++|+|++..+++|+.||.|++||..++....... .+. +...-|.++.+-. +.|++|.+-|+
T Consensus 147 ~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~ 226 (691)
T KOG2048|consen 147 KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGT 226 (691)
T ss_pred EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCce
Confidence 44455567899999999999999999999999999999887654221 111 1233456666654 49999999999
Q ss_pred EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
|.+||...+ .++..+..|...|.+++..+++. +++++|.|+.|..|
T Consensus 227 V~FWd~~~g---TLiqS~~~h~adVl~Lav~~~~d-------~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 227 VTFWDSIFG---TLIQSHSCHDADVLALAVADNED-------RVFSAGVDPKIIQY 272 (691)
T ss_pred EEEEcccCc---chhhhhhhhhcceeEEEEcCCCC-------eEEEccCCCceEEE
Confidence 999999987 77788889999999999999988 99999999988654
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4e-25 Score=188.52 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=208.4
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc-cccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY-SHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
|+..-+.|+|. |++|.+++.| .|++|+. ... +...++.. +...|.+++-..+.|++++.+++|.+|.+.+++
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~-~sd~e~P~ti~~---~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKT-NSDEEEPETIDI---SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeec-CCcccCCchhhc---cCceeEEEeecccceEEeeccceEEEeeCCCCC
Confidence 88999999999 9999999999 9999998 444 56666665 888999999998899999999999999999887
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
....+. ...-++.+++++. ++++.|+.|-.|++-+.........+ .+
T Consensus 88 ~~~iL~------------------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l-rg 136 (933)
T KOG1274|consen 88 EDTILA------------------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL-RG 136 (933)
T ss_pred ccceee------------------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee-cc
Confidence 654444 3456889999998 79999999999999999988888888 89
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
|..+|.++.++|++ .|++.+.||.|++||+........-....+. .-......+..++|+|++..++..+.|+.|++
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~--n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKD--NEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcc--ccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 99999999999999 5899999999999999832211111100000 00011456778999999888999999999999
Q ss_pred EecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|+.........+..- .+...+.++.|+|. |||+++.||.|.|||+++-+ . ......|.+++|.|+.+
T Consensus 215 y~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h----ccccceeEEEecCCCCC
Confidence 999988755444332 23333777777766 99999999999999999731 1 22346799999999886
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.4e-25 Score=167.72 Aligned_cols=214 Identities=22% Similarity=0.368 Sum_probs=167.9
Q ss_pred CCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 70 SSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 70 ~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
+|.+.|+++...+.. +++|+.||.|.+||++.....+.-..+-. ...+....++ .+|.-.|.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k-----------~~c~v~~~h~----~~Hky~is 105 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK-----------HKCIVAKQHE----NGHKYAIS 105 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh-----------eeeeccccCC----ccceeeee
Confidence 399999999998753 99999999999999986542111000000 0000111111 38899999
Q ss_pred EEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC----eEEEEeCCCeEEEEEccccccccc
Q 038568 147 DLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG----VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 147 ~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
++.|.| .++.+++.|.++++||.++.+....| ..++.|.+-+++|-. .+++|..+-.|++.|+.
T Consensus 106 s~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~------- 176 (397)
T KOG4283|consen 106 SAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA------- 176 (397)
T ss_pred eeEEeeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEEecCCCcEEEEecc-------
Confidence 999999 89999999999999999998888777 667788888888854 48888899999999998
Q ss_pred cccceeeeeEeeccccceeEEEEecCCC-EEEEEecCCeEEEEecccC------------CceeeeeeccCCccceEEEe
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVWERERD------------HRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~ 286 (357)
.+.....+.+|...|.++.|+|... .|++|+.||.|++||++.. +.+...+.-..|.+.+..++
T Consensus 177 ---SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla 253 (397)
T KOG4283|consen 177 ---SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA 253 (397)
T ss_pred ---CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence 6678889999999999999999665 6789999999999999753 22222333456888899999
Q ss_pred ecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 287 NVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
|..+ ++++++.|..+++|+..+++
T Consensus 254 ~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 254 WTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ecccchhhhhccCccceEEeecccCc
Confidence 8766 99999999999999998764
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=3.2e-24 Score=176.36 Aligned_cols=259 Identities=12% Similarity=0.117 Sum_probs=177.3
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-EEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I-FTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
++.+++++.| .|++||+ .+++.+..+.. + ..+.+++|+|++ + ++++.++.|++||..+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~-~t~~~~~~~~~---~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDT-ATLEVTRTFPV---G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP----- 70 (300)
T ss_pred CcEEEEecCCCEEEEEEC-CCCceEEEEEC---C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-----
Confidence 3678899999 9999999 88888888874 4 346789999986 4 567788999999998775433221
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
.+ ..+..++++| +.++ +++.++.|++||+++.+.+..+ .....+.++++
T Consensus 71 -------------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~--~~~~~~~~~~~ 122 (300)
T TIGR03866 71 -------------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI--PVGVEPEGMAV 122 (300)
T ss_pred -------------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--eCCCCcceEEE
Confidence 11 1245678888 5554 4556899999999987777666 23345678999
Q ss_pred ecCC-eEEEEeCCC-eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCc
Q 038568 192 SDNG-VVYTGSADG-RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHR 268 (357)
Q Consensus 192 ~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 268 (357)
+|++ .++++..++ .+..||.+ ......... ....+.+++|+|++++|+++ ..++.|++||+++++.
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~----------~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTK----------TYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCC----------CCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 9999 466666654 56778876 222222222 22345779999999988655 4699999999998764
Q ss_pred eeeeeec--cCCcc--ceEEEeecCc--e-EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCe
Q 038568 269 MVFAEAL--WGHTG--ALLCLINVGD--L-LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGI 341 (357)
Q Consensus 269 ~~~~~~~--~~~~~--~v~~~~~~~~--~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 341 (357)
...+... ..+.. ....+.++++ + +++.+.++.+.+||.++++ .+..+ .+...+.+++|+|+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~------ 261 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE---VLDYL-LVGQRVWQLAFTPDEK------ 261 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEE-EeCCCcceEEECCCCC------
Confidence 3322210 00111 1234556554 4 4445567789999998763 33332 2345789999999998
Q ss_pred EEEEEc-CCCCeEEecC
Q 038568 342 VSIGSG-SLNGEIKVWD 357 (357)
Q Consensus 342 ~~l~s~-~~dg~v~~wd 357 (357)
+|+++ +.+|.|++||
T Consensus 262 -~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 262 -YLLTTNGVSNDVSVID 277 (300)
T ss_pred -EEEEEcCCCCeEEEEE
Confidence 77765 5799999997
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.4e-27 Score=197.00 Aligned_cols=223 Identities=20% Similarity=0.384 Sum_probs=194.3
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|...|.|+..- ++.+++|+.| .+-+|.. .....+..|.+ |..+|.++.|++.. |++|+.+|+|++||++..
T Consensus 27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~---hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAI-GKPNAITSLTG---HESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhceeeeeccceeeccCCCceeeccccc-cCCchhheeec---cCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 88889988865 8999999999 9999999 66677777888 99999999999876 889999999999999987
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+..+.+ .+|...+.++.|+| .+.++|+.|+.+++||++...|...+ .
T Consensus 103 k~vrtL------------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-~ 151 (825)
T KOG0267|consen 103 KIVRTL------------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-K 151 (825)
T ss_pred hhhhhh------------------------------hccccCcceeeeccceEEeccccccccceehhhhccCceeee-c
Confidence 655433 39999999999999 88899999999999999988899998 7
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
+|...+..+.|+|+| +++.++.|..+++||.. .++....+..|...+.++.|+|..-++++|+.|++++
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~----------agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT----------AGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeeccc----------ccccccccccccccccccccCchhhhhccCCCCceee
Confidence 799999999999999 68999999999999997 6778888999999999999999989999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d 298 (357)
+||+++-+ .+.........|.+..|+++ .+++|..+
T Consensus 222 f~dletfe---~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 222 FWDLETFE---VISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccceeE---EeeccCCccCCceeeeecCCceeeecCchh
Confidence 99999765 44444455778999999987 55555444
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.94 E-value=8.9e-26 Score=185.20 Aligned_cols=270 Identities=21% Similarity=0.286 Sum_probs=186.4
Q ss_pred ccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccce--eccccCCCCceEEEEEecCc---eEEeecC
Q 038568 20 LKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDT--FSNDLSSSGSVKSITFHITK---IFTAHQD 91 (357)
Q Consensus 20 ~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~--~~~~~~~~~~v~~l~~~~~~---l~~~~~d 91 (357)
|+.+.. |.++|..+.|- ...|++++.| ++++||+ +..+.+.. +.+ |.+.|.+++|.|.. |++|+.|
T Consensus 93 lk~~~a--H~nAifDl~wapge~~lVsasGDsT~r~Wdv-k~s~l~G~~~~~G---H~~SvkS~cf~~~n~~vF~tGgRD 166 (720)
T KOG0321|consen 93 LKKPLA--HKNAIFDLKWAPGESLLVSASGDSTIRPWDV-KTSRLVGGRLNLG---HTGSVKSECFMPTNPAVFCTGGRD 166 (720)
T ss_pred hccccc--ccceeEeeccCCCceeEEEccCCceeeeeee-ccceeecceeecc---cccccchhhhccCCCcceeeccCC
Confidence 444444 99999999999 6689999999 9999999 87777766 776 99999999999865 9999999
Q ss_pred CeEEEEecCCccceeeeeecC-ccccceeeeecCCCeEEEecccccccccccc----cEEEEEEec-CeEEEEec-CCeE
Q 038568 92 CKIRVWKITASRQHQLVSTLP-TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD----AVSDLVVKQ-GLMYSVSW-DRSF 164 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~-~~l~~~~~-dg~i 164 (357)
|.|.|||++-... ..+..+. ...........+.. ........+..+.. .|+.+.|.. ..||+++. |+.|
T Consensus 167 g~illWD~R~n~~-d~~e~~~~~~~~~~n~~ptpsk---p~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~i 242 (720)
T KOG0321|consen 167 GEILLWDCRCNGV-DALEEFDNRIYGRHNTAPTPSK---PLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTI 242 (720)
T ss_pred CcEEEEEEeccch-hhHHHHhhhhhccccCCCCCCc---hhhccccccccccCceeeeeEEEEEeccceeeeccCCCcce
Confidence 9999999875431 0110000 00000000000000 00111122223333 356677777 88999888 9999
Q ss_pred EEEEcCcchhhhhcc-------ccc---cccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 165 KIWNASNYKCLESVN-------KAH---EDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~-------~~~---~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
++||+++........ ..+ ...+.++.....| +|++.+.|+.|++|++.... ..++..+.++
T Consensus 243 KVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s--------~sP~~~~sg~ 314 (720)
T KOG0321|consen 243 KVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS--------ISPVAEFSGK 314 (720)
T ss_pred EEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC--------cCchhhccCc
Confidence 999999765443321 112 3356777777766 67777889999999998332 2233333333
Q ss_pred ccc--eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCC
Q 038568 234 RST--VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 234 ~~~--v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~ 308 (357)
... -..-..+|++.++++|+.|...++|.+.+.+. ....+.+|...|.++.|.+. -++++++|..+++|++.+
T Consensus 315 ~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 315 LNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA--PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ccceeeeeeecCCCCceEeccCCCcceeeeeecCccC--ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 211 11234578999999999999999999998765 34567799999999999876 788889999999999965
Q ss_pred C
Q 038568 309 E 309 (357)
Q Consensus 309 ~ 309 (357)
+
T Consensus 393 ~ 393 (720)
T KOG0321|consen 393 G 393 (720)
T ss_pred c
Confidence 4
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.7e-25 Score=186.50 Aligned_cols=236 Identities=18% Similarity=0.231 Sum_probs=194.8
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCc-cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITAS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
|...-+.|+|.|++ |++++.||.|++|+.... +....+. .+...|.+
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~------------------------------~~g~~v~~ 61 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID------------------------------ISGELVSS 61 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh------------------------------ccCceeEE
Confidence 88899999999998 999999999999998765 3322221 36678889
Q ss_pred EEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 148 LVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 148 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
++...++|++|+.+++|.+|.+..++.-..+ ....-++++++++-+| +++.|+.|-.|++.++. ....
T Consensus 62 ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~----------D~s~ 130 (933)
T KOG1274|consen 62 IACYSNHFLTGSEQNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD----------DSSQ 130 (933)
T ss_pred EeecccceEEeeccceEEEeeCCCCCcccee-eeeeccceEEEEecCCcEEEeecCceeEEEEecc----------ccch
Confidence 9888899999999999999999888766555 6678899999999999 69999999999999987 4556
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCC-----ccceEEEeecCc--eEEEecCCC
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH-----TGALLCLINVGD--LLASGSADR 299 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~--~l~~~~~dg 299 (357)
...+++|.++|.++.|+|++++||+.+.||.|++||+.++.....+..+... ...+..++|+|+ .++..+.|+
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~ 210 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN 210 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC
Confidence 6788999999999999999999999999999999999987644333322221 334567789988 888999999
Q ss_pred eEEEeeCCCCcceeeeeee--cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 300 TVRIWQRGKENCYRCMAFL--EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++|+.... .....+ ..+...+..+.|+|.|. |||+++.||.|.|||
T Consensus 211 ~Vkvy~r~~w---e~~f~Lr~~~~ss~~~~~~wsPnG~-------YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 211 TVKVYSRKGW---ELQFKLRDKLSSSKFSDLQWSPNGK-------YIAASTLDGQILVWN 260 (933)
T ss_pred eEEEEccCCc---eeheeecccccccceEEEEEcCCCc-------EEeeeccCCcEEEEe
Confidence 9999999876 333333 33445599999999998 999999999999997
No 146
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.94 E-value=5.2e-26 Score=167.31 Aligned_cols=284 Identities=14% Similarity=0.167 Sum_probs=199.7
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~ 104 (357)
|.+.|+++.|. ..+|.+|..- .|++|++ .+.+....++. .+...|+.+.-.|+. +.+-+.|+.+.+|++..+..
T Consensus 13 ~~~~v~s~~fqa~~rL~sg~~~G~V~~w~l-qt~r~~~~~r~--~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 13 HSSSVTSVLFQANERLMSGLSVGIVKMWVL-QTERDLPLIRL--FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAF 89 (323)
T ss_pred ccchheehhhccchhhhcccccceEEEEEe-ecCccchhhhh--hccceeeceeecCCcchhhcCCCceEEEEEccCcce
Confidence 99999999999 8889999988 9999999 88888888873 278899999999965 99999999999999986532
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCC-eEEEEEcC-----------cc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDR-SFKIWNAS-----------NY 172 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~i~iwd~~-----------~~ 172 (357)
.. .|+-.++++.|.+.-+...+... .+-.++-+ ..
T Consensus 90 i~---------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 90 IS---------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred EE---------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc
Confidence 21 23334455555442222222211 11122111 11
Q ss_pred hhhhhc---cccccccEEEEEEec-CC---eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC
Q 038568 173 KCLESV---NKAHEDAVNAVVVSD-NG---VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD 245 (357)
Q Consensus 173 ~~~~~~---~~~~~~~v~~~~~~~-~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 245 (357)
..+... .....+.+.+..+.- ++ .+++|.++|.+.+||+...+..-......+.......|..+|.++.|.+.
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~ 216 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS 216 (323)
T ss_pred ceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh
Confidence 111111 023345566666443 23 38899999999999998443222222334455566779999999999986
Q ss_pred CCEEEEEecCCeEEEEecccCCc-eeee--eeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCc
Q 038568 246 GSLLFSGGCDRWIVVWERERDHR-MVFA--EALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHE 322 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~-~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~ 322 (357)
-..=++|+.+..+..|+++.... +... ..+......-..+..+++.+|+++.|+.||||+.++. +++..++.|.
T Consensus 217 ~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHs 293 (323)
T KOG0322|consen 217 CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHS 293 (323)
T ss_pred hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---Cchhhhhhhh
Confidence 66678888888899999874421 1111 1121111122446667779999999999999999997 7888999999
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|++++|+|+.+ ++|++|.|++|.+|+
T Consensus 294 agvn~vAfspd~~-------lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 294 AGVNAVAFSPDCE-------LMAAASKDARISLWK 321 (323)
T ss_pred cceeEEEeCCCCc-------hhhhccCCceEEeee
Confidence 9999999999987 999999999999996
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.8e-24 Score=178.08 Aligned_cols=320 Identities=17% Similarity=0.201 Sum_probs=227.8
Q ss_pred eecccccCCCCCCCccceeEEEEe--cc---eEEEeeCC-ceEEEeccCC--ccccceeccccCCCCceEEEEEecCceE
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NS---LLYAASLN-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFHITKIF 86 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~---~l~t~~~d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~l~ 86 (357)
..+.++++ |.++|+|+.+- .+ ++++|+.| .|++|.+ +. ...+..+++ |...+.|+.-.+....
T Consensus 45 ~i~t~l~G-----H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l-~~~~~~~i~~~~g---~~~~~~cv~a~~~~~~ 115 (764)
T KOG1063|consen 45 LIVTTLDG-----HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKL-RDEYLIKIYTIQG---HCKECVCVVARSSVMT 115 (764)
T ss_pred eeEEeccC-----CccceEEEEEcccccccceEEEccCCCcEEEEEE-eehheEEEEeecC---cceeEEEEEeeeeEEE
Confidence 45566665 99999999997 33 79999999 9999999 53 233445554 6665555544333333
Q ss_pred EeecCCeEEEEecCCccceeeeee---------------cCccccceeeeecCCCeEEEeccc------ccccccccccE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVST---------------LPTVKDRLIRSVLPNNYVTVRRHK------KRLWLEHWDAV 145 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v 145 (357)
+.+.|+++.+||.+..+. ..... .+.....+.........+.+.... ...+.+|.+.|
T Consensus 116 ~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWI 194 (764)
T KOG1063|consen 116 CKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWI 194 (764)
T ss_pred eeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhh
Confidence 347899999999955441 11111 110111111111222223333322 24558999999
Q ss_pred EEEEEec-----CeEEEEecCCeEEEEEcCcch---------------------hh---------hhccccccccEEEEE
Q 038568 146 SDLVVKQ-----GLMYSVSWDRSFKIWNASNYK---------------------CL---------ESVNKAHEDAVNAVV 190 (357)
Q Consensus 146 ~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~---------------------~~---------~~~~~~~~~~v~~~~ 190 (357)
.+++|.. -+|+++|.|..|+||.+.-+. .+ ..+..+|.+.|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 9999988 479999999999999764322 01 012258999999999
Q ss_pred EecCC-eEEEEeCCCeEEEEEccccccccccccceeeee---EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 191 VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT---TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 191 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
|+|.+ .|++++.|.++.+|... +......... ...+.........|+|+++.+++-+..|-.++|.....
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd------~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPD------ENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred EccchhhheecccCcceEEEecC------CccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc
Confidence 99999 69999999999999876 2222222222 22233456788999999999999999999999996655
Q ss_pred CceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCC-CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEE
Q 038568 267 HRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRG-KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 343 (357)
..........||...|..++|+| ++|++.+.|.+-|+|-.- ....+..+.+.+-|...++|++|-+... .
T Consensus 349 ~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~-------~ 421 (764)
T KOG1063|consen 349 TFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL-------Q 421 (764)
T ss_pred cceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc-------e
Confidence 55556667789999999999995 599999999999998765 3334677888889999999999999544 7
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
+++|.+...+|+|+
T Consensus 422 FVSgAdEKVlRvF~ 435 (764)
T KOG1063|consen 422 FVSGADEKVLRVFE 435 (764)
T ss_pred eeecccceeeeeec
Confidence 99999999999875
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.5e-25 Score=179.16 Aligned_cols=234 Identities=19% Similarity=0.310 Sum_probs=187.7
Q ss_pred CCCceEEEEEecC-c-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHIT-K-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~-~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|.+-|.++..+.. + ++||+. |.|+|||+........+..+.- ......|.++
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc-------------------------l~rdnyiRSc 471 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC-------------------------LNRDNYIRSC 471 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccc-------------------------cCcccceeee
Confidence 8888989988854 4 888776 8999999986643333322211 0234568888
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhh--hhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCL--ESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
...+ +.|++|+.-.++.|||+...... ..+ ....-...+++.+||.. .++++.||.|.|||+. .
T Consensus 472 kL~pdgrtLivGGeastlsiWDLAapTprikael-tssapaCyALa~spDakvcFsccsdGnI~vwDLh----------n 540 (705)
T KOG0639|consen 472 KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL-TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH----------N 540 (705)
T ss_pred EecCCCceEEeccccceeeeeeccCCCcchhhhc-CCcchhhhhhhcCCccceeeeeccCCcEEEEEcc----------c
Confidence 8888 88999999999999999865433 233 33345677899999985 8889999999999998 6
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTV 301 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i 301 (357)
...++.+++|...+.||.+++||..|.+|+-|++||.||+++++++... .....|.++.+.|+ +++.|-+++.+
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh----dF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH----DFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh----hhhhhheecccCCCccceeeecccCcE
Confidence 7789999999999999999999999999999999999999988754221 23456777776665 99999999999
Q ss_pred EEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 302 RIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 302 ~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|......+ .+.+..|.+-|.++.|.+.++ ++++.|.|..+..|
T Consensus 617 evlh~skp~----kyqlhlheScVLSlKFa~cGk-------wfvStGkDnlLnaw 660 (705)
T KOG0639|consen 617 EVLHTSKPE----KYQLHLHESCVLSLKFAYCGK-------WFVSTGKDNLLNAW 660 (705)
T ss_pred EEEecCCcc----ceeecccccEEEEEEecccCc-------eeeecCchhhhhhc
Confidence 999887653 455677999999999999999 99999999998888
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=6.4e-25 Score=167.29 Aligned_cols=272 Identities=14% Similarity=0.238 Sum_probs=195.8
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEec----CceEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI----TKIFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~----~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
..+|++-.+ .|++||. .+++.+..|.+ +...++.+.|.. +.+.+|+.||+|++||++.......+..-
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~---~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~--- 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKG---PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT--- 113 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecC---CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc---
Confidence 457777777 9999999 89999999998 888888888875 34999999999999999987655444332
Q ss_pred ccceeeeecCCCeEEEeccccccccccc-ccEEEEEEec--CeEEEEec----CCeEEEEEcCcchh-hhhccccccccE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHW-DAVSDLVVKQ--GLMYSVSW----DRSFKIWNASNYKC-LESVNKAHEDAV 186 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~~----dg~i~iwd~~~~~~-~~~~~~~~~~~v 186 (357)
.+. .+..+++.+. +.+++|.. +-.|.+||++..+. +..+...|...|
T Consensus 114 -------------------------~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDV 168 (376)
T KOG1188|consen 114 -------------------------QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDV 168 (376)
T ss_pred -------------------------CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcc
Confidence 333 4667777764 56666643 66799999998776 788878999999
Q ss_pred EEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCCeEEEEec
Q 038568 187 NAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDRWIVVWER 263 (357)
Q Consensus 187 ~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~ 263 (357)
++++|+|.. .|++|+.||.|.+||+.. .. ....+.....+...|.++.|..++ +.|.+-+......+|++
T Consensus 169 T~lrFHP~~pnlLlSGSvDGLvnlfD~~~------d~-EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 169 TQLRFHPSDPNLLLSGSVDGLVNLFDTKK------DN-EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred eeEEecCCCCCeEEeecccceEEeeecCC------Cc-chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 999999987 799999999999999972 21 122233334577889999999876 35888888999999999
Q ss_pred ccCCceeeeeec----------cCCccceEEEeecCc-eEEEecC-CCeEEEeeC---CCCcceeeeeeecC-CcCceEE
Q 038568 264 ERDHRMVFAEAL----------WGHTGALLCLINVGD-LLASGSA-DRTVRIWQR---GKENCYRCMAFLEG-HEKPVKS 327 (357)
Q Consensus 264 ~~~~~~~~~~~~----------~~~~~~v~~~~~~~~-~l~~~~~-dg~i~vw~~---~~~~~~~~~~~~~~-h~~~v~~ 327 (357)
+.+......... .....-|.+...... ..+.++. -|...++-+ .++.....+..+++ |..-|++
T Consensus 242 e~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~ 321 (376)
T KOG1188|consen 242 EDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRD 321 (376)
T ss_pred cCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHH
Confidence 877632211111 001112222222222 4444433 555555543 34444455666666 7778999
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.|...+. ++.|||.||.+.+|.
T Consensus 322 i~~~~~~~-------~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 322 ILFDVKND-------VLYTGGEDGLLQAWK 344 (376)
T ss_pred Hhhhcccc-------eeeccCCCceEEEEe
Confidence 99987777 999999999999993
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-24 Score=173.12 Aligned_cols=255 Identities=13% Similarity=0.160 Sum_probs=194.5
Q ss_pred eeEEEEe-cceEEEee--CC-ceEEEeccCCcc-ccceeccccCCCCceEEEEEec--CceEEeecCCeEEEEecCCccc
Q 038568 32 ISCLAVH-NSLLYAAS--LN-EINVFDLISDYS-HVDTFSNDLSSSGSVKSITFHI--TKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~--~d-~i~iw~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
+.++.|+ .++|++++ .| .+++|.- .... .+...... ....-.|++... -++++|+..+.|+|||++....
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~--~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKL--TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecc-cCCCCccceeecc--ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 8899999 66577665 66 9999986 3321 11111110 111222333222 2399999999999999985444
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
.+.+ .+|.+.|+++.++. .+||+++..|.|.|..+.++..-..+....
T Consensus 114 hr~l------------------------------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 114 HRFL------------------------------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhhc------------------------------cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 3333 38999999999998 899999999999999999998888885555
Q ss_pred cccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEE
Q 038568 183 EDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIV 259 (357)
Q Consensus 183 ~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 259 (357)
...+.-+.++|.. .|.+++.+|.|.+||+. ...........|..+...++|+| +..+|++.+.|..|.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~---------g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~ 234 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ---------GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKIN 234 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEecc---------CCCcccchhhhccCCcCcceecCCccceEEEecccceEE
Confidence 6677899999977 48889999999999997 22334445668999999999999 556889999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
+||.+.......+. ...+...++|.++ +|++|...|.|..||++..+ .++..+..|...|++++|-|..
T Consensus 235 ~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 235 IYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred Eeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 99998665332222 3455667777666 99999999999999999864 7788999999999999998874
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.2e-25 Score=194.45 Aligned_cols=238 Identities=16% Similarity=0.203 Sum_probs=191.0
Q ss_pred CccceeEEEEe--cc----eEEEeeCC-ceEEEeccCC---c---cccceeccccCCCCceEEEEEecCc---eEEeecC
Q 038568 28 HHMIISCLAVH--NS----LLYAASLN-EINVFDLISD---Y---SHVDTFSNDLSSSGSVKSITFHITK---IFTAHQD 91 (357)
Q Consensus 28 h~~~i~~~~~s--~~----~l~t~~~d-~i~iw~~~~~---~---~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d 91 (357)
-...-+.++|. +. +||.|..| .|.+||. .. + ..+.++.. |.+.|..+.|++.. |++|+.|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p-~~~~~~~~~~~la~~~~---h~G~V~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDP-ASIIANASEEVLATKSK---HTGPVLGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecc-hhhccCcchHHHhhhcc---cCCceeeeeccccCCceeeccCCC
Confidence 45677889998 44 48888888 9999998 43 2 33445554 99999999999864 9999999
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEE
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd 168 (357)
|.|.|||+...+....... ....+.|.+++|+. ..|++++.+|++.|||
T Consensus 139 geI~iWDlnn~~tP~~~~~----------------------------~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGS----------------------------QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred CcEEEeccCCcCCCCCCCC----------------------------CCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 9999999987553322211 13467899999999 8899999999999999
Q ss_pred cCcchhhhhcccccc-ccEEEEEEecCC--eEEEEeCCC---eEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 169 ASNYKCLESVNKAHE-DAVNAVVVSDNG--VVYTGSADG---RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~--~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
++..+.+..+..... ..+..++|+|+. ++++++.|. .|.+||+| ....+++.+.+|...|.++.|
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR---------~assP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLR---------FASSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccc---------ccCCchhhhcccccceeeecc
Confidence 999888877732222 357899999998 577777654 58999998 245577788899999999999
Q ss_pred ecCC-CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCC
Q 038568 243 NGDG-SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 243 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~ 309 (357)
++.+ ++|++++.|++|.+|+.++++ .+..+.....++..+.|.++ .+++++-||.|.|+.+...
T Consensus 262 c~~D~~lllSsgkD~~ii~wN~~tgE---vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 262 CPQDPRLLLSSGKDNRIICWNPNTGE---VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCCchhhhcccCCCCeeEecCCCce---EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 9955 899999999999999999988 44555557788999999876 8999999999999998764
No 152
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.4e-24 Score=165.11 Aligned_cols=289 Identities=11% Similarity=0.191 Sum_probs=211.9
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCC------ccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISD------YSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~v 96 (357)
|.+.|+++.|+ +++||+|+.| .+++|++ +. .+++..... +|...|.|++|.... +++|+.+++|..
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~-de~~~~k~~KPI~~~~~--~H~SNIF~L~F~~~N~~~~SG~~~~~VI~ 131 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNV-DELMVRKTPKPIGVMEH--PHRSNIFSLEFDLENRFLYSGERWGTVIK 131 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeech-HHHHhhcCCCCceeccC--ccccceEEEEEccCCeeEecCCCcceeEe
Confidence 99999999999 9999999999 9999998 43 344444433 477999999999654 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK- 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~- 173 (357)
-|+++.+.+...... ...+.|+.+..+| +.|++.+.++.|.+||.+..+
T Consensus 132 HDiEt~qsi~V~~~~----------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 132 HDIETKQSIYVANEN----------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQN 183 (609)
T ss_pred eecccceeeeeeccc----------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCC
Confidence 999988655433221 3345899999999 999999999999999998654
Q ss_pred hhhhcc-ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 174 CLESVN-KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 174 ~~~~~~-~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.+..+. .........+.|+|.. +|++.+..+.+-+||++.....-- .......+......-.++.|+|+|+.++
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~---~~~~~~~L~~~~~~~M~~~~~~~G~Q~m 260 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY---QRSMFKGLPQENTEWMGSLWSPSGNQFM 260 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH---hhhccccCcccchhhhheeeCCCCCeeh
Confidence 333221 2345667888999977 588999999999999983221100 0000111111122336788999999998
Q ss_pred EEecCCeEEEEecccCCceeeeeecc--C--CccceEEEeecCc-eEEEecCCCeEEEeeCCCCc---------------
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALW--G--HTGALLCLINVGD-LLASGSADRTVRIWQRGKEN--------------- 310 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~--------------- 310 (357)
+--....-.+||+-+.+.+....... + ....+.+++|.++ .+++|+.+-.|++|.+....
T Consensus 261 siRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 261 SIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred hhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhC
Confidence 88777777888988765432221111 0 1224567778877 79999999999999885311
Q ss_pred -----ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 311 -----CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 311 -----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....+..+++|.+-++.+.|+|-.. +|++.|....+++|.
T Consensus 341 ~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-------~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHRSVPNQVRFSQHNN-------LLVSSGVENSFKLWS 385 (609)
T ss_pred chhheecceeEEEecccccccceeecCCcc-------eEeccchhhheeccc
Confidence 1134567899999999999999987 999999999999994
No 153
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.2e-25 Score=175.85 Aligned_cols=289 Identities=19% Similarity=0.259 Sum_probs=218.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~ 100 (357)
|.+.|..|.|+ |..|++|+.| .|.+||+ ..+.....|.. +|...|....|.|.. +++++.||.+++=.+.
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW-~~~~~~l~f~S--GH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~ 217 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDW-VSGSPKLSFES--GHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEIL 217 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehh-hccCccccccc--ccccchhhhhccCCCCCcCceeccccCceeeeeec
Confidence 99999999999 9999999999 9999999 77777766665 599999888888753 9999999999998876
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
........+.+ ..|.++|..++..| ..|.+++.|+.+.-+|+++..+...
T Consensus 218 ~t~~~e~t~rl---------------------------~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 218 ETGYVENTKRL---------------------------APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred cccceecceec---------------------------ccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 54433322222 27889999999888 8899999999999999988765444
Q ss_pred cc--ccccc---cEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccc--cceeeeeEeeccccceeEEEEecCCCE
Q 038568 178 VN--KAHED---AVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERK--SRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 178 ~~--~~~~~---~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
+. ..+.. ....++..|.+ ++++++.|..+++||.+..+...... ....+-.........|++++|+.++.-
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSE 350 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccc
Confidence 32 22233 56788888876 59999999999999988443321111 000111111122346899999988877
Q ss_pred EEEEecCCeEEEEecccCCc----------eeeeeeccCCccc--eEEEeecC---ceEEEecCCCeEEEeeCCCCccee
Q 038568 249 LFSGGCDRWIVVWERERDHR----------MVFAEALWGHTGA--LLCLINVG---DLLASGSADRTVRIWQRGKENCYR 313 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~~~--v~~~~~~~---~~l~~~~~dg~i~vw~~~~~~~~~ 313 (357)
|+++..|-.|+++.-..+.- .......++|.+. |..+-|-| +++++|+.-|.|.+|+-.++ +
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---e 427 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---E 427 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---H
Confidence 88888888899995442221 1122336777653 56666655 39999999999999999987 6
Q ss_pred eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 314 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+..+.+...-|+||.-+|-.+ +|||+|-|..|+||
T Consensus 428 ii~~MegDr~VVNCLEpHP~~P-------vLAsSGid~DVKIW 463 (559)
T KOG1334|consen 428 IIRFMEGDRHVVNCLEPHPHLP-------VLASSGIDHDVKIW 463 (559)
T ss_pred HHHHhhcccceEeccCCCCCCc-------hhhccCCccceeee
Confidence 6677777777999999999998 99999999999999
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.8e-25 Score=192.39 Aligned_cols=259 Identities=19% Similarity=0.273 Sum_probs=198.9
Q ss_pred eCC-ceEEEecc-CCc----cccceeccccCCCCceEEEEEecCc------eEEeecCCeEEEEecCCc---cceeeeee
Q 038568 46 SLN-EINVFDLI-SDY----SHVDTFSNDLSSSGSVKSITFHITK------IFTAHQDCKIRVWKITAS---RQHQLVST 110 (357)
Q Consensus 46 ~~d-~i~iw~~~-~~~----~~~~~~~~~~~~~~~v~~l~~~~~~------l~~~~~d~~i~vwd~~~~---~~~~~~~~ 110 (357)
+.+ ++.||.+. .+. +.+..+. .....+.|+|.+.+ |+.|..||.|.+||...- .....+..
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~----s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~ 111 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQ----SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT 111 (1049)
T ss_pred ccccccceeeecccCcccccccccccc----ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh
Confidence 345 66676661 111 2344444 56788999998642 788889999999998752 22222222
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhc-cccccccE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESV-NKAHEDAV 186 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v 186 (357)
...|.+.|..+.|++ +.||+|+.||.|.|||+++.+.-... .......|
T Consensus 112 ---------------------------~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI 164 (1049)
T KOG0307|consen 112 ---------------------------KSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEI 164 (1049)
T ss_pred ---------------------------hcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccc
Confidence 238999999999999 69999999999999999885544444 23356789
Q ss_pred EEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc--cceeEEEEecCC-CEEEEEecCC---eE
Q 038568 187 NAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR--STVNALALNGDG-SLLFSGGCDR---WI 258 (357)
Q Consensus 187 ~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~dg---~i 258 (357)
.+++|+..- .|++++.+|.+.|||++ ..+++..+..+. ..+..++|+|+. ..|++++.|. .|
T Consensus 165 ~~lsWNrkvqhILAS~s~sg~~~iWDlr----------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 165 KCLSWNRKVSHILASGSPSGRAVIWDLR----------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVI 234 (1049)
T ss_pred eEeccchhhhHHhhccCCCCCceecccc----------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCcee
Confidence 999998765 49999999999999998 334444444443 347789999965 4666666644 59
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.+||++.... ..+.+.+|...|++++|.+. +|++++.|+.|.+|+.+++ +.+..+....+.+..+.|+|...
T Consensus 235 qlWDlR~ass--P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 235 QLWDLRFASS--PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFDVQWCPRNP 309 (1049)
T ss_pred EeecccccCC--chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceeeeeecCCCc
Confidence 9999986554 55677899999999999865 9999999999999999998 77888888889999999999877
Q ss_pred CCCCCeEEEEEcCCCCeEEec
Q 038568 336 SASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+++.++.||.|.||
T Consensus 310 ------~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 310 ------SVMAAASFDGKISIY 324 (1049)
T ss_pred ------chhhhheeccceeee
Confidence 378899999999887
No 155
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.93 E-value=2e-23 Score=155.95 Aligned_cols=288 Identities=15% Similarity=0.164 Sum_probs=203.1
Q ss_pred cceecccccCCCCCCCccceeEEEEe-----cceEEEee----CC-ceEEEecc-CCccccceeccccCCCCceEEEEEe
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH-----NSLLYAAS----LN-EINVFDLI-SDYSHVDTFSNDLSSSGSVKSITFH 81 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s-----~~~l~t~~----~d-~i~iw~~~-~~~~~~~~~~~~~~~~~~v~~l~~~ 81 (357)
..+.+..+. -.-++.++.|+ +.+||.|+ .. .|.|-.+. ++++.+..-. ..|.-+++.+.|.
T Consensus 34 r~~eiy~Y~------ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~--fd~~YP~tK~~wi 105 (364)
T KOG0290|consen 34 RRKEIYTYN------APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN--FDHPYPVTKLMWI 105 (364)
T ss_pred ccceEEEec------CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC--CCCCCCccceEec
Confidence 444455565 34568899998 66899998 23 66666652 3333333221 2399999999999
Q ss_pred cCc------eEEeecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--
Q 038568 82 ITK------IFTAHQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-- 152 (357)
Q Consensus 82 ~~~------l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 152 (357)
|+. |++.+ +..+++|.+...+.. .....+.... -..+..+++++.|+.
T Consensus 106 Pd~~g~~pdlLATs-~D~LRlWri~~ee~~~~~~~~L~~~k----------------------ns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 106 PDSKGVYPDLLATS-SDFLRLWRIGDEESRVELQSVLNNNK----------------------NSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCccccCcchhhcc-cCeEEEEeccCcCCceehhhhhccCc----------------------ccccCCcccccccccCC
Confidence 874 33333 347999999753321 1111111100 125678999999998
Q ss_pred -CeEEEEecCCeEEEEEcCcchh---hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKC---LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+++.+.+-|-+..|||++++.. ...+ -+|...|..++|...+ .|++.+.||.+|+||+|..+ ....
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~~~vkTQL-IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-------HSTI 234 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVSGTVKTQL-IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-------HSTI 234 (364)
T ss_pred cceeEeecccCeEEEEEEeeccccceeeEE-EecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-------cceE
Confidence 8999999999999999998743 3334 6899999999999966 59999999999999998322 1233
Q ss_pred eeEeeccccceeEEEEec-CCCEEEEEecC-CeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeE
Q 038568 227 VTTLVKHRSTVNALALNG-DGSLLFSGGCD-RWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTV 301 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i 301 (357)
+.+-.....+...++|++ |-+++++-..| ..|.|.|++.... .+..+.+|.+.|..++|.|. .|++++.|..+
T Consensus 235 IYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa 312 (364)
T KOG0290|consen 235 IYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA 312 (364)
T ss_pred EecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence 333333356788999998 55688876655 4699999997664 56788999999999999876 99999999999
Q ss_pred EEeeCCCCcc---eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 302 RIWQRGKENC---YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 302 ~vw~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
.+||+..... ..++.... ..+.|+.+.|++..+ ..++.+.
T Consensus 313 liWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~------Dwiai~~ 355 (364)
T KOG0290|consen 313 LIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQP------DWIAICF 355 (364)
T ss_pred EEEecccccccCCCCchhhhh-ccceeeeeeecccCC------CEEEEEe
Confidence 9999986421 11222222 467899999997654 2666654
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=6.2e-24 Score=174.84 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=97.9
Q ss_pred cceeEEEEec-CCCEEEEEecCCeEEEEecccCCce----eeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeC
Q 038568 235 STVNALALNG-DGSLLFSGGCDRWIVVWERERDHRM----VFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQR 306 (357)
Q Consensus 235 ~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~ 306 (357)
..|+.+.|+| |...|++++.||.|++|.+..+... ..-..+..|...|..+.|+|- .|++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 3478889998 7778999999999999998754322 233456789999999999985 9999999999999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+. +....+.+|.+.|.+++|+|+++ .++|.+.||+|++|+
T Consensus 708 ~~~---~~~~~l~gHtdqIf~~AWSpdGr-------~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 708 ANA---KLYSRLVGHTDQIFGIAWSPDGR-------RIATVCKDGTLRVYE 748 (1012)
T ss_pred hhh---hhhheeccCcCceeEEEECCCCc-------ceeeeecCceEEEeC
Confidence 997 55677899999999999999999 999999999999985
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.92 E-value=1.9e-23 Score=162.27 Aligned_cols=241 Identities=17% Similarity=0.276 Sum_probs=176.5
Q ss_pred CCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecc
Q 038568 57 SDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRH 133 (357)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (357)
+.++.-.......+|.++|..++|+|-. |++|+.|.+|.||++..+.....+..
T Consensus 66 k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte----------------------- 122 (472)
T KOG0303|consen 66 KTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE----------------------- 122 (472)
T ss_pred cccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc-----------------------
Confidence 3444333333333599999999999843 99999999999999976644333221
Q ss_pred cccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEE
Q 038568 134 KKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVW 209 (357)
Q Consensus 134 ~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~ 209 (357)
....+.+|...|.-++|+| +.|++++.|.+|.+||+.+++.+.++ .|...|.++.|+.+| +|++.+.|..||+|
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l--~hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITL--DHPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeec--CCCCeEEEEEeccCCceeeeecccceeEEE
Confidence 1133459999999999999 99999999999999999999999888 499999999999999 79999999999999
Q ss_pred EccccccccccccceeeeeEeeccccc-eeEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCCccceEEE
Q 038568 210 ERSVVDHNKERKSRHMLVTTLVKHRST-VNALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGHTGALLCL 285 (357)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 285 (357)
|.+ ..+.+..-.+|.+. -..+.|-.++.++-+|- .+.++-+||...-+.......+....+ |+--
T Consensus 201 dpr----------~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnG-vl~P 269 (472)
T KOG0303|consen 201 DPR----------RGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNG-VLLP 269 (472)
T ss_pred cCC----------CCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCc-eEEe
Confidence 998 45566666667543 45567778888555553 378899999987776656666654444 4444
Q ss_pred eecCc---eEEEecCCCeEEEeeCCCCccee-eeeeecCCcCceEEEEEeeCC
Q 038568 286 INVGD---LLASGSADRTVRIWQRGKENCYR-CMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 286 ~~~~~---~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~ 334 (357)
.|+++ ..++|-.|+.||.|.+.+..++- -+.+++ ...+-.++.|.|..
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence 56665 55677789999999998764321 122222 34455666666643
No 158
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=156.92 Aligned_cols=244 Identities=16% Similarity=0.236 Sum_probs=173.6
Q ss_pred ceEEEeccCCcc-----ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccc--eeeeeecCcccccee
Q 038568 49 EINVFDLISDYS-----HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLI 119 (357)
Q Consensus 49 ~i~iw~~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~ 119 (357)
.++-|+. +... .+..+++ |...|++++|+.|+ |+|++.|++|++|+++.-.. .++++..
T Consensus 62 r~~~~k~-~q~~f~Hpl~~~~LKg---H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-------- 129 (420)
T KOG2096|consen 62 RNDQWKA-KQPTFVHPLNVSVLKG---HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-------- 129 (420)
T ss_pred chhhhcc-cCCCcccchhhhhhhc---cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--------
Confidence 4555665 3322 2345666 99999999999998 99999999999999976332 1111110
Q ss_pred eeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchh---h--------hhcccccccc
Q 038568 120 RSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKC---L--------ESVNKAHEDA 185 (357)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---~--------~~~~~~~~~~ 185 (357)
-..+.-+.+.|.| ..++++-...++++|.+...+. - ..+...|...
T Consensus 130 --------------------ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~ 189 (420)
T KOG2096|consen 130 --------------------VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVD 189 (420)
T ss_pred --------------------ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccc
Confidence 1123457788998 6677777778899998753221 0 1122445666
Q ss_pred EEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 186 VNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 186 v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+..+-...++ +|++++.|..|.+|+++ ++.+..+......-+..+.+|+|+++++++..-.|++|.+-
T Consensus 190 ~i~iGiA~~~k~imsas~dt~i~lw~lk-----------Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 190 IINIGIAGNAKYIMSASLDTKICLWDLK-----------GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPI 258 (420)
T ss_pred eEEEeecCCceEEEEecCCCcEEEEecC-----------CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEE
Confidence 6666666666 59999999999999986 56667777677777888999999999999999999999874
Q ss_pred c---C--CceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC----Ccceeeeeee----cCCcCceEEEE
Q 038568 265 R---D--HRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK----ENCYRCMAFL----EGHEKPVKSLV 329 (357)
Q Consensus 265 ~---~--~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~----~~~~~~~~~~----~~h~~~v~~~~ 329 (357)
- + +.......+.||...|..++|+++ .+++.+.||.+++||.+- ++..+.+.+. ....+.-..+.
T Consensus 259 f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~ 338 (420)
T KOG2096|consen 259 FTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE 338 (420)
T ss_pred eccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence 2 1 223344578899999999999987 999999999999999852 2222223322 22223334899
Q ss_pred EeeCCC
Q 038568 330 AISSSS 335 (357)
Q Consensus 330 ~~~~~~ 335 (357)
.+|++.
T Consensus 339 lsP~g~ 344 (420)
T KOG2096|consen 339 LSPSGD 344 (420)
T ss_pred eCCCCc
Confidence 999997
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=4e-23 Score=163.33 Aligned_cols=252 Identities=15% Similarity=0.171 Sum_probs=181.4
Q ss_pred cccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecCCccc-eeeeeecCccccceeeeecCCCeEEEeccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKITASRQ-HQLVSTLPTVKDRLIRSVLPNNYVTVRRHK 134 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (357)
......+. +.++|++++|+|.. +++|..-|+|-+||+.+.+. ...+
T Consensus 177 ~~~~v~kv---~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v-------------------------- 227 (498)
T KOG4328|consen 177 RILNVAKV---TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV-------------------------- 227 (498)
T ss_pred eecceeEe---cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce--------------------------
Confidence 44455555 88999999999964 88899999999999963221 1111
Q ss_pred ccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEE
Q 038568 135 KRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVW 209 (357)
Q Consensus 135 ~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~ 209 (357)
..+..|..+|.++.|+| ..+++.+.||+|+.-|+++...-..+. ......+.++.++.+. .++.+..=|...+|
T Consensus 228 -~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 228 -YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred -EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence 12238999999999999 899999999999999998765433331 2244566777777766 47778777899999
Q ss_pred EccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCcee-eeeeccCCccceEEEee
Q 038568 210 ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMV-FAEALWGHTGALLCLIN 287 (357)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~ 287 (357)
|+++ . ......+.-|...|.+++++| ...+|++++.|++.+|||++.-.... ++-....|...|.+..|
T Consensus 307 D~R~------~---~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyF 377 (498)
T KOG4328|consen 307 DLRT------D---GSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYF 377 (498)
T ss_pred Eeec------C---CccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEE
Confidence 9983 2 222334556778999999999 45589999999999999998644322 23344569999999999
Q ss_pred cCc--eEEEecCCCeEEEeeCCC-Ccceeeeeeec---CCcCc--eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 288 VGD--LLASGSADRTVRIWQRGK-ENCYRCMAFLE---GHEKP--VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 288 ~~~--~l~~~~~dg~i~vw~~~~-~~~~~~~~~~~---~h~~~--v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|. .|++.+.|..|+|||..- +....+...+. .+... .....|.|+.. +++.|-.-..|-|+|
T Consensus 378 SPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-------li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 378 SPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-------LIVVGRYPRPIDVFD 448 (498)
T ss_pred cCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCcc-------EEEEeccCcceeEEc
Confidence 887 899999999999999841 00112222222 11122 33557999887 888887777776664
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=6.7e-23 Score=177.68 Aligned_cols=290 Identities=23% Similarity=0.323 Sum_probs=207.0
Q ss_pred ccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecCC
Q 038568 29 HMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~~ 101 (357)
..+-..+.|+ ...++++... .|+|||. +.++.+..|.........|+.+.+-.+. +++|+.||.|+||+--.
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3345566777 7788888867 9999999 8888888888755667889999998653 99999999999998543
Q ss_pred c--cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 102 S--RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 102 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
. +..+.+....+..+... +..+.=.-+.|.. .+|++++.-..|+|||....++...
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~--------------------~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~d 1202 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLP--------------------GARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVAD 1202 (1387)
T ss_pred cccCCceeEEeeccccccCc--------------------cCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEee
Confidence 3 22233332222211111 1111113345655 7777777788999999999988888
Q ss_pred ccccccccEEEEEEecC-C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc--eeEEEEecCCC-EEEEE
Q 038568 178 VNKAHEDAVNAVVVSDN-G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST--VNALALNGDGS-LLFSG 252 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~-~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~ 252 (357)
+..+....++++.-+-. | .+++|..||.|++||.+... ....+...+.|... |..+.+.++|- .|++|
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-------~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg 1275 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-------PDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG 1275 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCC-------ccccceeecccCCcccceeEEeecCCCcceeee
Confidence 86667777888876543 3 69999999999999998322 22456677788877 99999998665 59999
Q ss_pred ecCCeEEEEecccCCceeeeeeccCCc--c-ceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeee----eecCCcC
Q 038568 253 GCDRWIVVWERERDHRMVFAEALWGHT--G-ALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMA----FLEGHEK 323 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~----~~~~h~~ 323 (357)
+.||.|++||++..... .......|. + ..+++..+.. .+|+|+. +.|+||++...+. ..+. .+....+
T Consensus 1276 s~~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIG 1352 (1387)
T ss_pred ccCCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCC
Confidence 99999999999974222 122222222 3 4777877765 8888888 9999999975321 1111 1222346
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+.+++|+|-.- ++|.|+.|.+|.||
T Consensus 1353 s~scL~FHP~~~-------llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRL-------LLAAGSADSTVSIY 1378 (1387)
T ss_pred CcceeeecchhH-------hhhhccCCceEEEe
Confidence 789999999987 89999999999987
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=2.4e-22 Score=156.69 Aligned_cols=295 Identities=17% Similarity=0.194 Sum_probs=196.5
Q ss_pred ccceeEEEEe---cceEEEeeCC-ceEEEeccCCccc---------cceeccccCCCCceEEEEEecCc--eEEeecCCe
Q 038568 29 HMIISCLAVH---NSLLYAASLN-EINVFDLISDYSH---------VDTFSNDLSSSGSVKSITFHITK--IFTAHQDCK 93 (357)
Q Consensus 29 ~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~---------~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~ 93 (357)
..+|..+.|. .+.||||+.| .|+||.+ +..+. ...+.. |...|+++.|+|++ |++|+.+|.
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v-~r~~~~~~~~~V~y~s~Ls~---H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKV-NRSEPGGGDMKVEYLSSLSR---HTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeee-eecCCCCCceeEEEeecccC---CcceeEEEEEcCCcCeeeecCCCce
Confidence 4688999998 4489999999 9999998 44222 234444 99999999999997 999999999
Q ss_pred EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 94 IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 94 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
+.+|....-... . .+. ......+.... .+++.+|...|..++|++ .++++++.|..+++||+..
T Consensus 89 v~lWk~~~~~~~----~----~d~-e~~~~ke~w~v-----~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 89 VFLWKQGDVRIF----D----ADT-EADLNKEKWVV-----KKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred EEEEEecCcCCc----c----ccc-hhhhCccceEE-----EEEecccccchhhhhccCCCceeeeeeccceEEEEEecc
Confidence 999987641110 0 000 00000111111 133347999999999999 8999999999999999999
Q ss_pred chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc-----------ccceeeeeEee--ccccce
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER-----------KSRHMLVTTLV--KHRSTV 237 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~v 237 (357)
|+.+..+ ..|...+..++|.|-+ ++++-+.|...+.+.+........- .......+.+. ....-.
T Consensus 155 G~l~~~~-~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF 233 (434)
T KOG1009|consen 155 GQLLAIL-DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF 233 (434)
T ss_pred ceeEeec-cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence 9999988 8999999999999987 5888888887777665421111000 00001111111 011234
Q ss_pred eEEEEecCCCEEEEEec----CC-----eEEEEecccCCceeeeeeccCCccceEEEeecC-------------------
Q 038568 238 NALALNGDGSLLFSGGC----DR-----WIVVWERERDHRMVFAEALWGHTGALLCLINVG------------------- 289 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~----dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------------------- 289 (357)
..++|+|+|.+|++.+. ++ ..++|+-...++ +...+.+-..+...+.+++
T Consensus 234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r--P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR--PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC--ceeecCCCCcceEEEEeeeeEEEecccccccccccccc
Confidence 56889999999887643 22 235555443322 2233334444444444432
Q ss_pred -ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 290 -DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 290 -~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
..+|.++ .+.|++||.++..++..+. .-|-.+|++++|++++. .|+..|.||...
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~--nihy~~iTDiaws~dg~-------~l~vSS~DGyCS 367 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVD--NIHYSAITDIAWSDDGS-------VLLVSSTDGFCS 367 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEe--eeeeeeecceeecCCCc-------EEEEeccCCceE
Confidence 1345555 4569999999875444333 45788999999999998 999999999754
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1e-22 Score=162.88 Aligned_cols=262 Identities=16% Similarity=0.170 Sum_probs=188.2
Q ss_pred eEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eE--EeecCCeEEEEecCCccc-eeeeeecCcccc
Q 038568 41 LLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IF--TAHQDCKIRVWKITASRQ-HQLVSTLPTVKD 116 (357)
Q Consensus 41 ~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~--~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~ 116 (357)
+.+..+.|.++|||+ ...+....+.... ....+.++.|.... |+ +.+.|..+++|.-..... +..+....
T Consensus 5 l~~aS~gd~~kl~D~-s~~~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~---- 78 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDF-SDLETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLT---- 78 (673)
T ss_pred eeeeccCCceEEeec-ccccCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccc----
Confidence 444444559999999 6656555555322 22348999999766 44 445688899997553311 11111110
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
+. .-.|++... .++++|+..++|+|||++...+.+.+ ..|...|+++.++..
T Consensus 79 -----------------------gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~stvt~v~YN~~ 132 (673)
T KOG4378|consen 79 -----------------------GD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL-KDHQSTVTYVDYNNT 132 (673)
T ss_pred -----------------------cc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc-cCCcceeEEEEecCC
Confidence 11 222333323 78999999999999999965566555 899999999999875
Q ss_pred C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCC-EEEEEecCCeEEEEecccCCceee
Q 038568 195 G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGS-LLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 195 ~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
. +|++++..|.|.+..+. .......+... ...|.-+.|+|..+ +|.+++.+|.|.+||.....+ .
T Consensus 133 DeyiAsvs~gGdiiih~~~----------t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp--~ 200 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTK----------TKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP--I 200 (673)
T ss_pred cceeEEeccCCcEEEEecc----------cCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc--c
Confidence 5 89999999999999987 22222333322 34567899999766 566788999999999986554 3
Q ss_pred eeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 272 AEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
......|..+...++|+|. +|++.+.|..|.+||....+ ....+. ...|.+.++|.++|. +|+.|.
T Consensus 201 ~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---s~~~l~-y~~Plstvaf~~~G~-------~L~aG~ 269 (673)
T KOG4378|consen 201 FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---STDRLT-YSHPLSTVAFSECGT-------YLCAGN 269 (673)
T ss_pred cchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc---ccceee-ecCCcceeeecCCce-------EEEeec
Confidence 4455679999988888775 99999999999999999753 223332 356899999999998 999999
Q ss_pred CCCeEEecC
Q 038568 349 LNGEIKVWD 357 (357)
Q Consensus 349 ~dg~v~~wd 357 (357)
..|.|..||
T Consensus 270 s~G~~i~YD 278 (673)
T KOG4378|consen 270 SKGELIAYD 278 (673)
T ss_pred CCceEEEEe
Confidence 999999987
No 163
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=3.3e-22 Score=149.36 Aligned_cols=243 Identities=19% Similarity=0.242 Sum_probs=185.7
Q ss_pred CccceeEEEEe---cceEEEeeCC--------ceEEEeccCCc--------cccceeccccCCCCceEEEEEecCc--eE
Q 038568 28 HHMIISCLAVH---NSLLYAASLN--------EINVFDLISDY--------SHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d--------~i~iw~~~~~~--------~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
|.+.|+.++-+ ...|+|+..+ .+-||.+.+.. +.+..+.. .+-+.|.|+.|.|+. ++
T Consensus 62 ~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt--eavg~i~cvew~Pns~kla 139 (370)
T KOG1007|consen 62 HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT--EAVGKINCVEWEPNSDKLA 139 (370)
T ss_pred CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH--HHhCceeeEEEcCCCCeeE
Confidence 88999999888 6778877653 46799983322 22333331 255699999999987 55
Q ss_pred EeecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEEEEecC
Q 038568 87 TAHQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWD 161 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~d 161 (357)
+-. |..|.+|++..+..+ ..+.... -.++....++-+|+| +.+++ ..|
T Consensus 140 sm~-dn~i~l~~l~ess~~vaev~ss~-------------------------s~e~~~~ftsg~WspHHdgnqv~t-t~d 192 (370)
T KOG1007|consen 140 SMD-DNNIVLWSLDESSKIVAEVLSSE-------------------------SAEMRHSFTSGAWSPHHDGNQVAT-TSD 192 (370)
T ss_pred Eec-cCceEEEEcccCcchheeecccc-------------------------cccccceecccccCCCCccceEEE-eCC
Confidence 554 899999999877652 1111100 014566778888988 44544 458
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
+++..||+++.++...+..+|...+..+.|+|+. .|++++.||.|++||.| ....++..+.+|...|.+
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R---------~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR---------KTKFPVQELPGHSHWVWA 263 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc---------CCCccccccCCCceEEEE
Confidence 9999999999999999988999999999999988 49999999999999998 356788899999999999
Q ss_pred EEEec-CCCEEEEEecCCeEEEEecccCC---------------------c-----eeeeeeccCCccceEEEeecCc--
Q 038568 240 LALNG-DGSLLFSGGCDRWIVVWERERDH---------------------R-----MVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 240 ~~~~~-~~~~l~~~~~dg~i~vwd~~~~~---------------------~-----~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
+.|+| ...++++|+.|..|.+|....-. + -..+.++..|...|.+++|+..
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP 343 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP 343 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence 99999 45688999999999999763210 0 0123356679999999999865
Q ss_pred -eEEEecCCCeEEEeeCCC
Q 038568 291 -LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 291 -~l~~~~~dg~i~vw~~~~ 308 (357)
.+|+-+.||.+.|=.+..
T Consensus 344 WiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 344 WIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eeEEEeccCceEEeecCCh
Confidence 899999999998877654
No 164
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=3.4e-21 Score=158.44 Aligned_cols=258 Identities=12% Similarity=0.148 Sum_probs=172.6
Q ss_pred cceecccccCCCCCCCccceeEEEEe--cceE-EEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--e-
Q 038568 13 KHHCIASLKIPSPDPHHMIISCLAVH--NSLL-YAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--I- 85 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l-~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l- 85 (357)
+.++++.+.. | ..+.+++|+ ++.+ ++++.+ .|++||. .+++....+.. +. .+..++|+|++ +
T Consensus 20 t~~~~~~~~~-----~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~-~~~~~~~~~~~---~~-~~~~~~~~~~g~~l~ 88 (300)
T TIGR03866 20 TLEVTRTFPV-----G-QRPRGITLSKDGKLLYVCASDSDTIQVIDL-ATGEVIGTLPS---GP-DPELFALHPNGKILY 88 (300)
T ss_pred CCceEEEEEC-----C-CCCCceEECCCCCEEEEEECCCCeEEEEEC-CCCcEEEeccC---CC-CccEEEECCCCCEEE
Confidence 4556666663 3 346789998 6665 566677 9999999 88777776653 33 35678999986 4
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC-
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR- 162 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg- 162 (357)
++++.|+.+++||+.+.+....+. +...+.+++|+| .++++++.++
T Consensus 89 ~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 89 IANEDDNLVTVIDIETRKVLAEIP-------------------------------VGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred EEcCCCCeEEEEECCCCeEEeEee-------------------------------CCCCcceEEECCCCCEEEEEecCCC
Confidence 445568999999998765433221 122356789988 6777777665
Q ss_pred eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCCeEEEEEccccccccccccceeeeeEeecc-------
Q 038568 163 SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH------- 233 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~------- 233 (357)
.+.+||.++++.+... .......++.|+|++. ++ ++..++.|++||++. .+....+..+
T Consensus 138 ~~~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~----------~~~~~~~~~~~~~~~~~ 205 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNV--LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT----------RKVIKKITFEIPGVHPE 205 (300)
T ss_pred eEEEEeCCCCeEEEEE--EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc----------ceeeeeeeecccccccc
Confidence 5677899887665544 2234457899999984 54 445699999999972 2222222111
Q ss_pred ccceeEEEEecCCCEEEEE-ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe-cCCCeEEEeeCCCC
Q 038568 234 RSTVNALALNGDGSLLFSG-GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG-SADRTVRIWQRGKE 309 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~-~~dg~i~vw~~~~~ 309 (357)
......++|+|++++++++ +.++.|.+||+++.+..... .+...+.+++|+++ +|+++ +.+|.|++||++++
T Consensus 206 ~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 206 AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL----LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE----EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 1123468899999986554 45678999999876643222 12345777788765 77665 56899999999997
Q ss_pred cceeeeeeecCCcCceEEEEEee
Q 038568 310 NCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 310 ~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
+.+..+... ...++++++|
T Consensus 282 ---~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 282 ---KVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ---cEEEEEEcc-cccceeEeCC
Confidence 445555544 4458888765
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=1.1e-22 Score=154.50 Aligned_cols=248 Identities=18% Similarity=0.259 Sum_probs=180.6
Q ss_pred CccceeEEEEe------cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEE
Q 038568 28 HHMIISCLAVH------NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s------~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vw 97 (357)
|...-..++|+ ..++|+|+.- .|+|.|+ .+++....+.+ |...|+.|.++|+. +++++.|..|++|
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~-~~~~~~~~~~g---hG~sINeik~~p~~~qlvls~SkD~svRlw 163 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDV-VSGQCSKNYRG---HGGSINEIKFHPDRPQLVLSASKDHSVRLW 163 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEec-chhhhccceec---cCccchhhhcCCCCCcEEEEecCCceEEEE
Confidence 77778888887 3578888877 9999999 99999999998 99999999999976 9999999999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
++++...+..+.-.. +|.+.|.++.|+. .++++++.|.+|++|++...+..
T Consensus 164 nI~~~~Cv~VfGG~e---------------------------gHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~ 216 (385)
T KOG1034|consen 164 NIQTDVCVAVFGGVE---------------------------GHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFK 216 (385)
T ss_pred eccCCeEEEEecccc---------------------------cccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHh
Confidence 999987665554433 9999999999999 99999999999999999854321
Q ss_pred hhc---------------------------cccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccc----cccccce
Q 038568 176 ESV---------------------------NKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHN----KERKSRH 224 (357)
Q Consensus 176 ~~~---------------------------~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~~~~~~ 224 (357)
..+ ...|...|.|+.|-- .++++-+.++.|..|.....+.. +..+...
T Consensus 217 ~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 217 NKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred hhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 111 023444555555543 26788888999999998321111 0111122
Q ss_pred eeeeEeeccccceeEEE--EecCCCEEEEEecCCeEEEEecccCCceeeeee-ccCCccceEEEeecCc--eEEEecCCC
Q 038568 225 MLVTTLVKHRSTVNALA--LNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA-LWGHTGALLCLINVGD--LLASGSADR 299 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~l~~~~~dg 299 (357)
..+..+.-....++-+. |+|-++.|+.|.+.|.|++||++..++...... .......|...+|+.+ .|+...+|+
T Consensus 296 Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence 33344444445555554 556778999999999999999997765322111 1112345666666544 899999999
Q ss_pred eEEEeeCC
Q 038568 300 TVRIWQRG 307 (357)
Q Consensus 300 ~i~vw~~~ 307 (357)
+|.-||..
T Consensus 376 ~Vwrwdrv 383 (385)
T KOG1034|consen 376 TVWRWDRV 383 (385)
T ss_pred cEEEEEee
Confidence 99999864
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.5e-21 Score=145.92 Aligned_cols=266 Identities=17% Similarity=0.236 Sum_probs=189.5
Q ss_pred CC-ceEEEeccCCc--c-ccceeccccCCCCceEEEEEecCc---eEEeecC-------CeEEEEecCCccceeeeeecC
Q 038568 47 LN-EINVFDLISDY--S-HVDTFSNDLSSSGSVKSITFHITK---IFTAHQD-------CKIRVWKITASRQHQLVSTLP 112 (357)
Q Consensus 47 ~d-~i~iw~~~~~~--~-~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d-------~~i~vwd~~~~~~~~~~~~~~ 112 (357)
.| .|.+.++ +.. . .-+.|.. |.+.|..|+-+|.. |+|+..+ -.+.||.+..........++.
T Consensus 38 ~dNqVhll~~-d~e~s~l~skvf~h---~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRL-DSEGSELLSKVFFH---HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEe-cCccchhhhhhhhc---CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 45 7777777 332 2 2345555 88999999999854 5555442 247899887543321111111
Q ss_pred ccccceeeeecCCCeEEEeccccccc-ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh-hhhcc----ccccc
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC-LESVN----KAHED 184 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~-~~~~~----~~~~~ 184 (357)
.. ..+ ..+-+.|.|+.|.| ..+++-. |..|.+|++..... +..+. ..+..
T Consensus 114 ~v---------------------~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 114 CV---------------------ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred Hh---------------------hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccc
Confidence 00 000 14556899999999 5566555 88999999987665 33321 33566
Q ss_pred cEEEEEEec--CCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-EEEEEecCCeEEEE
Q 038568 185 AVNAVVVSD--NGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGGCDRWIVVW 261 (357)
Q Consensus 185 ~v~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~vw 261 (357)
..++-+|+| ++.-+....|+++..||+|+. .+....-..|...|..+.|+|+.. +|++|+.||.|++|
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~---------~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriW 242 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSDSTLQFWDLRTM---------KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIW 242 (370)
T ss_pred eecccccCCCCccceEEEeCCCcEEEEEccch---------hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEE
Confidence 788889998 455556667899999999932 222333457888899999999655 78899999999999
Q ss_pred ecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCc---------------------c-----e
Q 038568 262 ERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKEN---------------------C-----Y 312 (357)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~---------------------~-----~ 312 (357)
|.+..+. ++..+.+|...|.++.|++. +|++|+.|..|.+|....-. . -
T Consensus 243 D~R~tk~--pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 243 DTRKTKF--PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred eccCCCc--cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 9997764 67788999999999999886 89999999999999653210 0 1
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+.++..|.+.|.+++|+.-.+ -.||+-+.||++.|
T Consensus 321 g~l~tydehEDSVY~~aWSsadP------WiFASLSYDGRviI 357 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADP------WIFASLSYDGRVII 357 (370)
T ss_pred cccccccccccceEEEeeccCCC------eeEEEeccCceEEe
Confidence 13446778999999999998877 37899999999865
No 167
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.8e-22 Score=157.48 Aligned_cols=239 Identities=15% Similarity=0.248 Sum_probs=182.3
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
..+.|+++.|+|.. |++|+.|+++++|.++..... .+..+. -...+|.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~-~lqS~~---------------------------l~~fPi~~a 263 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP-KLQSIH---------------------------LEKFPIQKA 263 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccCh-hheeee---------------------------eccCcccee
Confidence 56799999999987 999999999999999865432 222211 345789999
Q ss_pred EEec---CeEEEEecCCeEEEEEcCcchhhhhcc-ccc-cccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccc
Q 038568 149 VVKQ---GLMYSVSWDRSFKIWNASNYKCLESVN-KAH-EDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 149 ~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
+|.| ..+++++....++.||+.+.+....-. .++ ...+....+++++ .|+..+..|.|.+.-..
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak---------- 333 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK---------- 333 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh----------
Confidence 9999 489999999999999998876443221 222 3457778889988 69999999999998766
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEE
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVR 302 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 302 (357)
..+.+..++ ..+.|..+.|+.+++.|++++.+|.|.+||++..........-.+-.+.-.|.+.++.+||+|+..|.|.
T Consensus 334 T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 334 TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence 445555555 4678999999999999999999999999999988644333332233344567777888999999999999
Q ss_pred EeeCCC---CcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC--CCCeEEe
Q 038568 303 IWQRGK---ENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS--LNGEIKV 355 (357)
Q Consensus 303 vw~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~--~dg~v~~ 355 (357)
|||.++ ...++++..+..-...|+++.|+++.+ +||-+| .+..+|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q-------iLAiaS~~~knalrL 463 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ-------ILAIASRVKKNALRL 463 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchh-------hhhhhhhccccceEE
Confidence 999754 223467777777778999999999998 887776 3444543
No 168
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=1.4e-21 Score=162.17 Aligned_cols=264 Identities=14% Similarity=0.230 Sum_probs=202.5
Q ss_pred ceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcccee
Q 038568 31 IISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~ 106 (357)
.|..++|. |..|+.+..+.+.+||. +.+..++++++ |...|++++|+.|+ +++|+.|..|.+|...-....
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~-ndG~llqtLKg---HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L- 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDT-SDGTLLQPLKG---HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL- 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeC-CCccccccccc---ccceEEEEEEccCCceeccCCCceeEEEeccccccee-
Confidence 89999998 88888887779999999 99999999999 99999999999987 999999999999986544322
Q ss_pred eeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccc
Q 038568 107 LVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184 (357)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (357)
+- .|.+.|.|+.|+| ..|++++-+ ..-+|......... .....
T Consensus 89 --kY-----------------------------SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K---~kss~ 133 (1081)
T KOG1538|consen 89 --KY-----------------------------SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK---HKSSS 133 (1081)
T ss_pred --ee-----------------------------ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh---hhhhe
Confidence 11 8999999999999 777777764 57788875433322 24567
Q ss_pred cEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-----CEEEEEecCCeE
Q 038568 185 AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-----SLLFSGGCDRWI 258 (357)
Q Consensus 185 ~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i 258 (357)
.+.+.+|..|| +++.|-.+|+|.+-+-. ......+....+..++|.+++|+|.. ..+++.....++
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~--------gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKN--------GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCC--------CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 78999999999 59999999999987543 11222233334567899999999943 478888888888
Q ss_pred EEEecccCCceeeeeeccCCccceEEEee--cCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLIN--VGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
.+|.+.. +.+...+. -.-.-.|+++ +|++++.|+.|+.+.+|--+ | ..+.++......|++++..|+++
T Consensus 206 SFy~LsG-~~Igk~r~---L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~PNsQ- 276 (1081)
T KOG1538|consen 206 SFYQLSG-KQIGKDRA---LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAKPNSQ- 276 (1081)
T ss_pred EEEEecc-eeeccccc---CCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEccCCc-
Confidence 8888763 32211111 1222344444 55699999999999999654 3 45666666788999999999999
Q ss_pred CCCCeEEEEEcCCCCeEEecC
Q 038568 337 ASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 337 ~~~~~~~l~s~~~dg~v~~wd 357 (357)
.++.|+.||+|-.||
T Consensus 277 ------~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 277 ------YVVVGCQDGTIACYN 291 (1081)
T ss_pred ------eEEEEEccCeeehhh
Confidence 999999999998765
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=148.13 Aligned_cols=266 Identities=18% Similarity=0.252 Sum_probs=194.5
Q ss_pred eeEEEEe--cceEEEeeCC-ceEEEeccCCcc------------ccceeccccCCCCceEEEEEec-------Cc--eEE
Q 038568 32 ISCLAVH--NSLLYAASLN-EINVFDLISDYS------------HVDTFSNDLSSSGSVKSITFHI-------TK--IFT 87 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~------------~~~~~~~~~~~~~~v~~l~~~~-------~~--l~~ 87 (357)
...+.|+ |..|++-+.| .+++|++ ...- ...+++- .....|...+|-+ +. +++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nl-P~dlys~~~~~~~~~~~~~~~r~--~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNL-PFDLYSKKADGPLNFSKHLSYRY--QEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEec-ChhhcccCCCCccccccceeEEe--ccCCEEEEEEeeeccccCCCccceeee
Confidence 3456788 8999999999 9999998 3210 0111111 1346677888863 32 888
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccc---cEEEEEEec--CeEEEEecCC
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD---AVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~l~~~~~dg 162 (357)
.+.+.-|++||.-+++........ .|.. ...+++|+| .+|++| ...
T Consensus 129 ssr~~PIh~wdaftG~lraSy~~y----------------------------dh~de~taAhsL~Fs~DGeqlfaG-ykr 179 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGKLRASYRAY----------------------------DHQDEYTAAHSLQFSPDGEQLFAG-YKR 179 (406)
T ss_pred ccccCceeeeeccccccccchhhh----------------------------hhHHhhhhheeEEecCCCCeEeec-ccc
Confidence 889999999999999876555433 3333 346899999 555554 568
Q ss_pred eEEEEEc-Ccchhh---hhc---cccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 163 SFKIWNA-SNYKCL---ESV---NKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 163 ~i~iwd~-~~~~~~---~~~---~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
+|+++|+ +.|+.- .++ +.+..+.+.+++++|-. .+++|+....+-||.-. ...++..+-+|
T Consensus 180 cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~----------~~~pl~llggh 249 (406)
T KOG2919|consen 180 CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD----------GRRPLQLLGGH 249 (406)
T ss_pred eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC----------CCCceeeeccc
Confidence 9999999 444321 122 12346788999999966 58999998888888765 55677888899
Q ss_pred ccceeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCcc-ce----EEEeecCceEEEecCCCeEEEeeCC
Q 038568 234 RSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHTG-AL----LCLINVGDLLASGSADRTVRIWQRG 307 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~-~v----~~~~~~~~~l~~~~~dg~i~vw~~~ 307 (357)
.+.|+.+.|.++|+.|++|+. |-.|.+||++.... ++..+..|.. .- ..+...+++|++|+.||.|++||+.
T Consensus 250 ~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~--pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD--PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred CCCeeeEEeccCcCeecccccCCCeEEEEeehhccc--hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 999999999999999999986 77899999996554 3344555544 22 2333445599999999999999999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+.. ..+..+..|+..++.++++|-.+ +++|++..
T Consensus 328 ~~g--n~~sv~~~~sd~vNgvslnP~mp-------ilatssGq 361 (406)
T KOG2919|consen 328 DLG--NEVSVTGNYSDTVNGVSLNPIMP-------ILATSSGQ 361 (406)
T ss_pred CCC--CcccccccccccccceecCcccc-------eeeeccCc
Confidence 832 45677788999999999999988 88888743
No 170
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=5.7e-21 Score=162.12 Aligned_cols=267 Identities=14% Similarity=0.144 Sum_probs=194.7
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccce--eeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQH--QLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~ 123 (357)
.+.||++.+...+-..+. -...|.++.|+|.. ++.|+.+|+|.+||++.+... ..+...
T Consensus 223 ~~~vW~~~~p~~Pe~~~~----~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~------------ 286 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLE----SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL------------ 286 (555)
T ss_pred eEEEEecCCCCCceEEEe----cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc------------
Confidence 599999944445555555 67899999999754 899999999999999877642 222111
Q ss_pred CCCeEEEecccccccccccccEEEEEEec----CeEEEEecCCeEEEEEcCcchh-hhh-----cc-----ccccccEEE
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASNYKC-LES-----VN-----KAHEDAVNA 188 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~-~~~-----~~-----~~~~~~v~~ 188 (357)
...|..+++.+.|.. .-+++++.||.|..|+++.-.. ... .. ......+++
T Consensus 287 --------------~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~ 352 (555)
T KOG1587|consen 287 --------------EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATS 352 (555)
T ss_pred --------------cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceee
Confidence 127899999999988 4599999999999998875332 111 10 123346888
Q ss_pred EEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 189 VVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 189 ~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
++|.+.. .+++|+.+|.|.--+........ ....+....+..|.++|+++.++|=+..++..+.|.+++||.....
T Consensus 353 ~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~--~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~ 430 (555)
T KOG1587|consen 353 LKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP--EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI 430 (555)
T ss_pred EeeccCCCceEEEEcCCcEEEEEeccCCcccc--cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC
Confidence 9998866 69999999999874433111110 0122445566778999999999996655554445999999998732
Q ss_pred CceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEE
Q 038568 267 HRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVS 343 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 343 (357)
.. ++..+..+...+++++|++. .|+++..||.|.+||+.... ..++.....+....+.+.|++.++ .
T Consensus 431 ~~--Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~g~-------~ 500 (555)
T KOG1587|consen 431 AS--PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPNGK-------L 500 (555)
T ss_pred CC--cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCCCc-------E
Confidence 22 34455567777999999987 89999999999999997642 344555555567788889999898 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
|+.|...|.+++|+
T Consensus 501 lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 501 LAVGDANGTTHILK 514 (555)
T ss_pred EEEecCCCcEEEEE
Confidence 99999999999885
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=137.28 Aligned_cols=285 Identities=16% Similarity=0.205 Sum_probs=190.7
Q ss_pred ceeEEEEe--cceEEEeeCC-ceEEEeccCC----------ccccceeccccCCCCceEEEEEecCceEEeecCCeEEEE
Q 038568 31 IISCLAVH--NSLLYAASLN-EINVFDLISD----------YSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVW 97 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~----------~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vw 97 (357)
.|.+-+++ +++|++|..+ .|-+..+ ++ ..++-.+++ |.++|+.++|..+.|++|+. |.|+-|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl-~sl~s~sa~~~gk~~iv~eqa---hdgpiy~~~f~d~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSL-KSLDSGSAEPPGKLKIVPEQA---HDGPIYYLAFHDDFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEe-hhhhccccCCCCCcceeeccc---cCCCeeeeeeehhheeeccC-ceEEEe
Confidence 35555566 8999999999 9999988 33 123334455 99999999999777887775 999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL 175 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 175 (357)
..+......-.+.+=...... .+-...-..|+++...| +.++.++.|+.++-||+++|+..
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~-----------------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~ 149 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPM-----------------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ 149 (325)
T ss_pred eehhhhhhccchhhhhhcCcc-----------------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE
Confidence 987544311111000000000 00001234688888888 77777779999999999999999
Q ss_pred hhccccccccEEEEEE-ecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCCEEEEEe
Q 038568 176 ESVNKAHEDAVNAVVV-SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 253 (357)
..+ .+|.+.+.++.- +.++.+++|+.||++|+||.++.+..+....... ...++.| ...|.+++.+ ..+|++|+
T Consensus 150 r~~-rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~-~~~lRp~~g~wigala~~--edWlvCGg 225 (325)
T KOG0649|consen 150 REY-RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKN-PNLLRPDWGKWIGALAVN--EDWLVCGG 225 (325)
T ss_pred EEE-cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccC-hhhcCcccCceeEEEecc--CceEEecC
Confidence 999 999999999998 4566899999999999999985443322111111 1112222 3456677665 44777765
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
...+.+|.++..+....+. -...+..+.|..+.+++++..+.|.-|.+.. .............++..|+..
T Consensus 226 -Gp~lslwhLrsse~t~vfp----ipa~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~ 296 (325)
T KOG0649|consen 226 -GPKLSLWHLRSSESTCVFP----IPARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTS 296 (325)
T ss_pred -CCceeEEeccCCCceEEEe----cccceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCC
Confidence 4569999999877543332 3456778899999999999999999998874 333333333444556655543
Q ss_pred CCCCCCCeEEEEEcCCCCeEEec
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
-- .+|-.++....+.++
T Consensus 297 p~------k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 297 PI------KFISIAGFSNKLHIL 313 (325)
T ss_pred ce------EEEEecccceeeeee
Confidence 22 366667777776654
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.8e-21 Score=156.71 Aligned_cols=213 Identities=16% Similarity=0.281 Sum_probs=150.5
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc----eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~ 100 (357)
|.+.|+|++|+ |.+|++|+.| .+.|||. -..++++.+.. +|...|.++.|-|.. +++|..|..|+++|+.
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~-~~~KllhsI~T--gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~ 125 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDP-FEYKLLHSIST--GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD 125 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecc-hhcceeeeeec--ccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence 99999999999 9999999999 9999999 67777777764 599999999999843 9999999999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchh---
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKC--- 174 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~--- 174 (357)
..+.-..-... ......|..|...|..++..| +.+.+++.||+|+-+|++....
T Consensus 126 ~~~~~~~d~~~--------------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 126 SSKEGGMDHGM--------------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred cccccccccCc--------------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 53321110000 001134458889999998888 7899999999999999986321
Q ss_pred -------hhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccc-cc-cc------cceeeeeEe-eccc--
Q 038568 175 -------LESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHN-KE-RK------SRHMLVTTL-VKHR-- 234 (357)
Q Consensus 175 -------~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~-~~-~~------~~~~~~~~~-~~~~-- 234 (357)
+..+ ...--...++.++|.. +|++|+.|-..++||.+..... .. .. ....++.-+ .+|-
T Consensus 186 ~~~~~~~l~ny-~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPSILVNY-NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccHHHHHh-chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 1111 1222456788999976 6999999999999995532111 00 00 000011111 1111
Q ss_pred ---------cceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 235 ---------STVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 235 ---------~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
..++.+.|+|+|.-|++.-....|+++|+.
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 125678899999887777666779999874
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=171.97 Aligned_cols=262 Identities=20% Similarity=0.282 Sum_probs=197.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
|.++|.|+.|. |.++++|+.| .++||.. ++..++..+.| |.+.|+.++.+.+. +++++.|..|++|.+..+
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~-et~~~lAs~rG---hs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSM-ETARCLASCRG---HSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeec-cchhhhccCCC---CccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 99999999999 9999999999 9999998 99999999999 99999999999776 899999999999999988
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc----
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV---- 178 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---- 178 (357)
..+..+ .+|++.|++++|+|.. +.+.||++++||.+- ..+...
T Consensus 265 ~pvsvL------------------------------rghtgavtaiafsP~~--sss~dgt~~~wd~r~-~~~~y~prp~ 311 (1113)
T KOG0644|consen 265 APVSVL------------------------------RGHTGAVTAIAFSPRA--SSSDDGTCRIWDARL-EPRIYVPRPL 311 (1113)
T ss_pred chHHHH------------------------------hccccceeeeccCccc--cCCCCCceEeccccc-cccccCCCCC
Confidence 765433 3999999999999933 888899999999872 211111
Q ss_pred cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCC
Q 038568 179 NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDR 256 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 256 (357)
.......+.++.+-.++ .+++++.|+.-..|.+.. +..+...+.-+.++.+- .+.+++-.+-
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~----------------l~~~~~~lif~t~ssd~~~~~~~ar~~~ 375 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQ----------------LAWRSNLLIFVTRSSDLSSIVVTARNDH 375 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhH----------------hhhhccceEEEeccccccccceeeeeee
Confidence 11233556666676666 599999999999888651 01111112222222221 4667777788
Q ss_pred eEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 257 WIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 257 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.+.+|++.++. ....+.+|...+..+.++|- ...+++.||...|||+-.+-+.+... .+|. .+..-.|+++
T Consensus 376 ~~~vwnl~~g~---l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~--~gh~-kl~d~kFSqd 449 (1113)
T KOG0644|consen 376 RLCVWNLYTGQ---LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF--IGHG-KLVDGKFSQD 449 (1113)
T ss_pred Eeeeeecccch---hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee--cccc-eeeccccCCC
Confidence 89999999887 45566788888888877654 77899999999999999885443322 4554 4566789999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEe
Q 038568 334 SSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
|. .++....-|.+.|
T Consensus 450 gt-------s~~lsd~hgql~i 464 (1113)
T KOG0644|consen 450 GT-------SIALSDDHGQLYI 464 (1113)
T ss_pred Cc-------eEecCCCCCceEE
Confidence 87 5655555566554
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=1.4e-20 Score=140.88 Aligned_cols=201 Identities=17% Similarity=0.197 Sum_probs=157.0
Q ss_pred cccccEEEEEEec-------CeEEEEecCCeEEEEEcCcch----hhhhc----cccccccEEEEEEecCC--eEEEEeC
Q 038568 140 EHWDAVSDLVVKQ-------GLMYSVSWDRSFKIWNASNYK----CLESV----NKAHEDAVNAVVVSDNG--VVYTGSA 202 (357)
Q Consensus 140 ~~~~~v~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~----~~~~~----~~~~~~~v~~~~~~~~~--~l~~~~~ 202 (357)
.|.-+++.+.|.| ++||+++ -.+++|.+...+ +...+ ...+..++++..|+.-. ++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 7888999999998 3555554 379999987421 11111 13456789999998644 6999999
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCCeEEEEecccCCceeeeeeccCCccc
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA 281 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 281 (357)
|-+..+||++. + ........+..|...|..++|...+ +.+++.+.||.+|+||++..+....+..-.....+
T Consensus 172 DTTCTiWdie~------~-~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p 244 (364)
T KOG0290|consen 172 DTTCTIWDIET------G-VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP 244 (364)
T ss_pred cCeEEEEEEee------c-cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence 99999999982 1 1233466778899999999999855 48899999999999999987655455544444667
Q ss_pred eEEEeecCc---eEEEecCC-CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 282 LLCLINVGD---LLASGSAD-RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 282 v~~~~~~~~---~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...++|+.. ++|+-..| ..|.+.|++.+. .++..+++|.+.|++++|.|... ..|+|+|+|..+.+||
T Consensus 245 LlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~------~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 245 LLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSS------SHICTAGDDCQALIWD 316 (364)
T ss_pred ceeeccCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCCC------ceeeecCCcceEEEEe
Confidence 888998754 77776665 579999999873 66899999999999999999876 4899999999999997
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.8e-21 Score=151.47 Aligned_cols=248 Identities=14% Similarity=0.203 Sum_probs=177.2
Q ss_pred ecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCC------ccccceeccccCCCCceEEEEEecCc-
Q 038568 16 CIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISD------YSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 16 ~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~------~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
.-.....+.| |+++|..++|+ .+.||+||.| +|.||++.+. .+++..+.+ |...|--++|+|.-
T Consensus 70 ~d~~~P~v~G--Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g---H~rrVg~V~wHPtA~ 144 (472)
T KOG0303|consen 70 MDASYPLVCG--HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG---HQRRVGLVQWHPTAP 144 (472)
T ss_pred cCCCCCCccC--ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee---cceeEEEEeecccch
Confidence 3333344456 99999999999 8899999999 9999998322 245667777 99999999999964
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
|++++.|.+|.+|++.+++....+ .|.+.|.++.|+. .++++++.
T Consensus 145 NVLlsag~Dn~v~iWnv~tgeali~l-------------------------------~hpd~i~S~sfn~dGs~l~Ttck 193 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTGEALITL-------------------------------DHPDMVYSMSFNRDGSLLCTTCK 193 (472)
T ss_pred hhHhhccCCceEEEEeccCCceeeec-------------------------------CCCCeEEEEEeccCCceeeeecc
Confidence 999999999999999999754433 6899999999999 99999999
Q ss_pred CCeEEEEEcCcchhhhhccccccc-cEEEEEEecCCeEEEEe----CCCeEEEEEccccccccccccceeeeeEeecccc
Q 038568 161 DRSFKIWNASNYKCLESVNKAHED-AVNAVVVSDNGVVYTGS----ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS 235 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (357)
|..|+|||.++++.+..- ..|.+ .-..+.|..++.+++.+ .+..+-+||....+ . .-....+. ..+
T Consensus 194 DKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~------e-P~~~~elD-tSn 264 (472)
T KOG0303|consen 194 DKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE------E-PIALQELD-TSN 264 (472)
T ss_pred cceeEEEcCCCCcEeeec-ccccCCCcceeEEeccCceeeeccccccccceeccCccccc------C-cceeEEec-cCC
Confidence 999999999999988876 55543 34456677777666554 47889999976221 1 12223333 345
Q ss_pred ceeEEEEecCCCEEEEEe-cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCC
Q 038568 236 TVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 236 ~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~ 308 (357)
.|.---|.+|.+.++.++ .|+.||.|.+.........-.......+-..+.+.|+.-+-.+..-..++|.+.+
T Consensus 265 Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKRGl~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 265 GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHE 338 (472)
T ss_pred ceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccccccchHHHHHHHHHhhc
Confidence 566566788888766555 5999999999876543222222233445566677666444444444444444433
No 176
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.4e-22 Score=160.60 Aligned_cols=258 Identities=19% Similarity=0.263 Sum_probs=181.2
Q ss_pred ccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCC--------ccccceeccccCCCCceEEEEEecCc--
Q 038568 18 ASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISD--------YSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 18 ~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~--------~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
.++.. |.+.|++++|. ...|++|+.| +|.+|++ +. .+++.+|++ |.++|.|++..+++
T Consensus 288 ~tl~s-----~~d~ir~l~~~~sep~lit~sed~~lk~WnL-qk~~~s~~~~~epi~tfra---H~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 288 FTLRS-----HDDCIRALAFHPSEPVLITASEDGTLKLWNL-QKAKKSAEKDVEPILTFRA---HEGPVLCVVVPSNGEH 358 (577)
T ss_pred eeeec-----chhhhhhhhcCCCCCeEEEeccccchhhhhh-cccCCccccceeeeEEEec---ccCceEEEEecCCceE
Confidence 35665 99999999998 7899999999 9999999 32 456788888 99999999999987
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCC
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR 162 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 162 (357)
+++|+.||+|+.|++............. .-..++.+|.+.|+.+++++ ..|++++.||
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~--------------------vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPS--------------------VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcc--------------------hhccceeccccceeeeeecccccceeeecCCc
Confidence 9999999999999876322111110000 00134459999999999999 8899999999
Q ss_pred eEEEEEcCcchhhhhccc-cccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEee-------c
Q 038568 163 SFKIWNASNYKCLESVNK-AHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-------K 232 (357)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~ 232 (357)
+++.|+.....+ .++.. .......++.+-... ..++...-+.-.++++.. ...+..+. .
T Consensus 419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev----------~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEV----------VSDLLIFESSASPGPR 487 (577)
T ss_pred eEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhh----------hhheeeccccCCCccc
Confidence 999999876655 33311 112223344443222 122222223333333321 11111111 1
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCc
Q 038568 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~ 310 (357)
....+..+.++|...+.+++..|+.|+++|..++. .+.....|...++++++.++ +|++++.||.+++|.+...
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k- 563 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK---ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK- 563 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccc---cchheeeccceecceeecCCCceEEeecCCceeehhhccch-
Confidence 12346778889999999999999999999999887 45566679999999999887 9999999999999999765
Q ss_pred ceeeeeeecCC
Q 038568 311 CYRCMAFLEGH 321 (357)
Q Consensus 311 ~~~~~~~~~~h 321 (357)
.++.....|
T Consensus 564 --~~~~es~~~ 572 (577)
T KOG0642|consen 564 --TCVLESTAH 572 (577)
T ss_pred --heeeccccc
Confidence 444444444
No 177
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.4e-21 Score=156.42 Aligned_cols=236 Identities=18% Similarity=0.233 Sum_probs=176.3
Q ss_pred eeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccc
Q 038568 64 TFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH 141 (357)
Q Consensus 64 ~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (357)
.+.+ |.+.|.+|...|.+ |++|+.||+++||.+.+++++..+. .
T Consensus 395 vyrG---Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-------------------------------~ 440 (733)
T KOG0650|consen 395 VYRG---HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-------------------------------F 440 (733)
T ss_pred eEec---cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-------------------------------e
Confidence 4455 99999999999987 9999999999999999998766553 3
Q ss_pred cccEEEEEEec---CeEEEEecCCeEEEEEcCcchh---------------------------------hh---hccccc
Q 038568 142 WDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKC---------------------------------LE---SVNKAH 182 (357)
Q Consensus 142 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---------------------------------~~---~~~~~~ 182 (357)
.+.|.|++|+| ..+++++.+..+.+-+..-|.. .. .+...|
T Consensus 441 d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~ 520 (733)
T KOG0650|consen 441 DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKH 520 (733)
T ss_pred cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEec
Confidence 45788888888 3333333333455554322210 00 011346
Q ss_pred cccEEEEEEecCC-eEEEEeC---CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeE
Q 038568 183 EDAVNAVVVSDNG-VVYTGSA---DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258 (357)
Q Consensus 183 ~~~v~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 258 (357)
...|..+.|+..| +|++... ...|.|.++. .......+....+.|.++.|+|...+|++++. ..|
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS----------K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~v 589 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS----------KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSV 589 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEecc----------cccccCchhhcCCceeEEEecCCCceEEEEec-cce
Confidence 7789999999999 6777654 4578899987 22333445556678999999999888988876 459
Q ss_pred EEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCC
Q 038568 259 VVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSS 336 (357)
Q Consensus 259 ~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 336 (357)
+|||+.... ..+.+......+..++.++ +-|+.|+.|+.+..+|+.-.. ++.+.++.|...+++++|++.-+
T Consensus 590 RiYdL~kqe---lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryP- 663 (733)
T KOG0650|consen 590 RIYDLSKQE---LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYP- 663 (733)
T ss_pred EEEehhHHH---HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccc-
Confidence 999998755 3344444556676666665 799999999999999998652 56788899999999999999998
Q ss_pred CCCCeEEEEEcCCCCeEEec
Q 038568 337 ASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 337 ~~~~~~~l~s~~~dg~v~~w 356 (357)
++++|+.||++.|+
T Consensus 664 ------Lfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 664 ------LFASGSDDGTVIVF 677 (733)
T ss_pred ------eeeeecCCCcEEEE
Confidence 99999999999875
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=1.8e-18 Score=133.85 Aligned_cols=234 Identities=15% Similarity=0.185 Sum_probs=177.4
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeec--CCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQ--DCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~--d~~i~vwd~~~~~ 103 (357)
....+..+.|+ ...|..|+.|--++|+. ++......... ....|..+-|+.+.++..+. -+.+++.++....
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~-~~~~k~~~~~~---~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSC-SPFEKCFSKDT---EGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEec-CchHHhhcccC---CCeEEEEeecccceeEEEecCCCceEEEEEcccCc
Confidence 45567788888 66777777778899998 55444222222 55678888899888444443 3458999988776
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcccc--
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKA-- 181 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-- 181 (357)
.+..+ ....+|.++.++.+.|+++-.+. |.|||+++.+.+.++...
T Consensus 80 ~ICe~-------------------------------~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~ 127 (391)
T KOG2110|consen 80 TICEI-------------------------------FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPP 127 (391)
T ss_pred eEEEE-------------------------------ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCC
Confidence 55444 33568999999997777777654 999999999999988433
Q ss_pred ccccEEEEEEecCC-eEEEE--eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe-
Q 038568 182 HEDAVNAVVVSDNG-VVYTG--SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW- 257 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 257 (357)
+...+.++..++.+ +++.- ...|.|.+||.. ..++...+..|++++.+++|+++|.+||++++.|+
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV 197 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV 197 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcc----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceE
Confidence 45556666666665 55543 346999999987 66778888999999999999999999999999987
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
||||.+.+++.+..++.-.- ...|.+++|+++ +|++.+..++|++|.+++
T Consensus 198 IRVf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 198 IRVFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEEEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 79999999987665554222 445688888887 899999999999998864
No 179
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=7.9e-21 Score=144.28 Aligned_cols=223 Identities=17% Similarity=0.221 Sum_probs=169.7
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCc---eEEEEEecCc-eEEeecCCeEEEEec-CCccceeeeeecC
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGS---VKSITFHITK-IFTAHQDCKIRVWKI-TASRQHQLVSTLP 112 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~---v~~l~~~~~~-l~~~~~d~~i~vwd~-~~~~~~~~~~~~~ 112 (357)
.+++|+.+.+ -|++||. -+++....+.+.. |... ..+++|+||+ -+.++....|+++|+ +.++......++.
T Consensus 123 t~l~a~ssr~~PIh~wda-ftG~lraSy~~yd-h~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDA-FTGKLRASYRAYD-HQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred cceeeeccccCceeeeec-cccccccchhhhh-hHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhh
Confidence 4688888899 9999999 8999888887644 4443 4689999998 555666789999999 4443322222211
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEE
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 189 (357)
.. -.+..+-+.+++|+| ..++.|+....+-|+.-....++..+ .+|.+.|+.+
T Consensus 201 ~~-----------------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-ggh~gGvThL 256 (406)
T KOG2919|consen 201 KG-----------------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-GGHGGGVTHL 256 (406)
T ss_pred cc-----------------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-cccCCCeeeE
Confidence 00 014567899999999 68999999999999998888899888 8999999999
Q ss_pred EEecCC-eEEEEeC-CCeEEEEEccccccccccccceeeeeEeecccc-ceeEE--EEecCCCEEEEEecCCeEEEEecc
Q 038568 190 VVSDNG-VVYTGSA-DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS-TVNAL--ALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 190 ~~~~~~-~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+|.++| +|++|.. |..|..||+| ....++..+..|.. .-..| ...|++++|++|+.||.|++||++
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR---------~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIR---------YSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeeh---------hccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 999999 6888765 7899999998 24456666666655 22234 446799999999999999999999
Q ss_pred cCCceeeeeeccCCccceEEEeecCc--eEEEecCC
Q 038568 265 RDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD 298 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d 298 (357)
+... ....+..+...+..++++|- ++++++..
T Consensus 328 ~~gn--~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 328 DLGN--EVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCC--cccccccccccccceecCcccceeeeccCc
Confidence 7433 33455668888999999998 56665543
No 180
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=1.7e-18 Score=149.86 Aligned_cols=275 Identities=29% Similarity=0.515 Sum_probs=205.6
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc-ccceeccccCCC-CceEEEEE-ecCc---eEEe-ecCCeEEEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS-HVDTFSNDLSSS-GSVKSITF-HITK---IFTA-HQDCKIRVW 97 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~-~~~~~~~~~~~~-~~v~~l~~-~~~~---l~~~-~~d~~i~vw 97 (357)
|...|.++.+. +..++.++.| .+.+|+. .... ....+.. +. ..+..+.+ .++. ++.. ..|+.+.+|
T Consensus 64 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 64 HEDSITSIAFSPDGELLLSGSSDGTIKLWDL-DNGEKLIKSLEG---LHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred ccceEEEEEECCCCcEEEEecCCCcEEEEEc-CCCceeEEEEec---cCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 99999999999 8888888888 9999999 6655 6666664 34 37777777 5544 3443 448999999
Q ss_pred ecCC-ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcch
Q 038568 98 KITA-SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNYK 173 (357)
Q Consensus 98 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~ 173 (357)
+... ......+ ..|...|..++|+| ..+++++. |+.+++|+...++
T Consensus 140 ~~~~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 140 DLSTPGKLIRTL------------------------------EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred EecCCCeEEEEE------------------------------ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc
Confidence 9987 3322222 27889999999999 57778875 9999999999877
Q ss_pred hhhhccccccccEEEEEEecCCe-EEEE-eCCCeEEEEEccccccccccccceeeee-EeeccccceeEEEEecCCCEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGV-VYTG-SADGRIRVWERSVVDHNKERKSRHMLVT-TLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.+..+ ..|...+.+++++|++. ++++ +.|+.+++||.. ...... .+..|.... ...|+|++.+++
T Consensus 190 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 257 (466)
T COG2319 190 PLSTL-AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS----------TGKLLRSTLSGHSDSV-VSSFSPDGSLLA 257 (466)
T ss_pred eEEee-ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC----------CCcEEeeecCCCCcce-eEeECCCCCEEE
Confidence 78777 66899999999999884 4444 899999999865 233333 566777665 448999998899
Q ss_pred EEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 251 SGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
+++.|+.+++|++..... ......+|...+.++.+.| ..+++++.|+.+++|+..+........ ...|...+..+
T Consensus 258 ~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSL 334 (466)
T ss_pred EecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEE
Confidence 999999999999997765 1222267888999999987 377778888999999988763222222 34777789999
Q ss_pred EEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 329 VAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.+++. ....++..|+.+++|+
T Consensus 335 ~~~~~~~------~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 335 SFSPDGS------LLVSGGSDDGTIRLWD 357 (466)
T ss_pred EECCCCC------EEEEeecCCCcEEeee
Confidence 9932313 1444446888888885
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=1.2e-20 Score=155.68 Aligned_cols=238 Identities=19% Similarity=0.268 Sum_probs=167.7
Q ss_pred cceEEE--eeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC---ceEEeecCCeEEEEecCCccceeeeeecC
Q 038568 39 NSLLYA--ASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT---KIFTAHQDCKIRVWKITASRQHQLVSTLP 112 (357)
Q Consensus 39 ~~~l~t--~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~---~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 112 (357)
..++|+ ++.. .|-||++.+.++.....-........|+++.|.|= +|+.++.||.|++|.+..+.......+..
T Consensus 591 ~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe 670 (1012)
T KOG1445|consen 591 NKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE 670 (1012)
T ss_pred cceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc
Confidence 444443 3445 99999995555543322211125678999999983 39999999999999998765443332221
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEE
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 189 (357)
.++..|...|+++.|+| +.|+++++|-+|++||+.+++....+ .+|.+.|..+
T Consensus 671 -----------------------~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-~gHtdqIf~~ 726 (1012)
T KOG1445|consen 671 -----------------------KILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-VGHTDQIFGI 726 (1012)
T ss_pred -----------------------eeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-ccCcCceeEE
Confidence 44558999999999999 99999999999999999999998888 8999999999
Q ss_pred EEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-ccceeEEEEecCCCEEEEEecCC----eEEEEec
Q 038568 190 VVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-RSTVNALALNGDGSLLFSGGCDR----WIVVWER 263 (357)
Q Consensus 190 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg----~i~vwd~ 263 (357)
+|+|+| ++++.+.||+|++|+.+. ..+++++-.+- ...-..+.|--+|+++++.+.|. +|.+||.
T Consensus 727 AWSpdGr~~AtVcKDg~~rVy~Prs---------~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 727 AWSPDGRRIATVCKDGTLRVYEPRS---------REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred EECCCCcceeeeecCceEEEeCCCC---------CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence 999999 599999999999999882 12223222211 12234577888999988887654 5888887
Q ss_pred ccCCce-eeeeeccCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCc
Q 038568 264 ERDHRM-VFAEALWGHTGALLCLINVGD---LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 264 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~ 310 (357)
++-... .....+.... .++--.++.+ ++++|-.|..|.+|.+-...
T Consensus 798 q~l~~~pl~t~~lDvap-s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 798 QTLDLRPLYTQVLDVAP-SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred hhccCCcceeeeecccC-ccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 754311 0111111111 1111123333 88999999999999987653
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.87 E-value=2.1e-19 Score=158.59 Aligned_cols=298 Identities=18% Similarity=0.240 Sum_probs=199.7
Q ss_pred ccceecccccCCCCCCCccceeEEEEe---cceEEEeeCC-ceEEEeccCCc-------cccceeccccCCCCceEEEEE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH---NSLLYAASLN-EINVFDLISDY-------SHVDTFSNDLSSSGSVKSITF 80 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~-------~~~~~~~~~~~~~~~v~~l~~ 80 (357)
+.+..+..|.. |...|..++.+ +.+++|||.| +|++|+. ... +...++.. ....+.++..
T Consensus 1036 p~G~lVAhL~E-----hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~-~k~~~~~~s~rS~ltys~---~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1036 PRGILVAHLHE-----HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNL-RKLEGEGGSARSELTYSP---EGSRVEKVTM 1106 (1431)
T ss_pred ccceEeehhhh-----ccccccceeecCCCCceEEEecCCceEEEeee-hhhhcCcceeeeeEEEec---cCCceEEEEe
Confidence 45677777876 99999999998 5899999999 9999998 431 11222322 4667888877
Q ss_pred ecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccc-cccccEEE-EEEec---C
Q 038568 81 HITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWL-EHWDAVSD-LVVKQ---G 153 (357)
Q Consensus 81 ~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~-~~~~~---~ 153 (357)
.+++ +|.++.||.|++.+++............ ++.. ...+.+.+ -+|.. .
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~-----------------------ri~n~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV-----------------------RIPNLKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEEEccccccccceeeee-----------------------ecccccCCCceEEeecccccccc
Confidence 7765 9999999999999998632111110000 0000 11223333 33333 3
Q ss_pred -eEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeE-
Q 038568 154 -LMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT- 229 (357)
Q Consensus 154 -~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~- 229 (357)
.++.+..-+.|..||++......+++ ....+.|++++.+|.+ .++.|...|.+.+||+| -..++..
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLR----------F~~~i~sw 1233 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLR----------FRVPILSW 1233 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEee----------cCceeecc
Confidence 78888889999999999887777663 3345789999999988 69999999999999998 2333333
Q ss_pred eeccccceeEEEEec---CCCEEEEEe--cCCeEEEEecccCCceeeeeecc----------------CC-ccceEEEee
Q 038568 230 LVKHRSTVNALALNG---DGSLLFSGG--CDRWIVVWERERDHRMVFAEALW----------------GH-TGALLCLIN 287 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~---~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~----------------~~-~~~v~~~~~ 287 (357)
..++..+++.+..+| .....++++ ..+.|.+|++.++.....+..-. .+ ...+.+.-.
T Consensus 1234 ~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~ 1313 (1431)
T KOG1240|consen 1234 EHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC 1313 (1431)
T ss_pred cCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc
Confidence 235567888888877 224444444 47889999999876443332210 00 111222233
Q ss_pred cCc-eEEEecCCCeEEEeeCCCCcce--------------------------e-------------------eeee----
Q 038568 288 VGD-LLASGSADRTVRIWQRGKENCY--------------------------R-------------------CMAF---- 317 (357)
Q Consensus 288 ~~~-~l~~~~~dg~i~vw~~~~~~~~--------------------------~-------------------~~~~---- 317 (357)
.++ .+.+|+.|..|+.||...+... + ....
T Consensus 1314 ~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~ 1393 (1431)
T KOG1240|consen 1314 EKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPG 1393 (1431)
T ss_pred cCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccC
Confidence 333 8999999999999997643210 0 0000
Q ss_pred ----ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 ----LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ----~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
-..|.++|+++++..... .+|++++.||.|++|.
T Consensus 1394 ~~~ps~~H~d~Itdma~~~~~q------~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1394 PSDPSTYHHDPITDMATLKSEQ------PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCCCcccccchhhhhhhhccCc------cEEEEecCCCeeeecC
Confidence 124778899998877654 4999999999999994
No 183
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.5e-20 Score=140.36 Aligned_cols=261 Identities=18% Similarity=0.229 Sum_probs=183.3
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
.++..+...-+.|.+ |-.+|++++|| |+.|+|+|.| .|.+||+ ..+.+++.++ ...+|..+.|+|..
T Consensus 49 I~D~~T~~iar~lsa-----H~~pi~sl~WS~dgr~LltsS~D~si~lwDl-~~gs~l~rir----f~spv~~~q~hp~k 118 (405)
T KOG1273|consen 49 IYDFDTFRIARMLSA-----HVRPITSLCWSRDGRKLLTSSRDWSIKLWDL-LKGSPLKRIR----FDSPVWGAQWHPRK 118 (405)
T ss_pred EEEccccchhhhhhc-----cccceeEEEecCCCCEeeeecCCceeEEEec-cCCCceeEEE----ccCccceeeecccc
Confidence 344555666677776 99999999999 9999999999 9999999 8889999998 88999999999864
Q ss_pred ---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe
Q 038568 85 ---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS 159 (357)
Q Consensus 85 ---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~ 159 (357)
.++.-.+..-.+-++..+.. ..+..... . .....-.+..|.+ +++++|.
T Consensus 119 ~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d------------~-------------dln~sas~~~fdr~g~yIitGt 172 (405)
T KOG1273|consen 119 RNKCVATIMEESPVVIDFSDPKH-SVLPKDDD------------G-------------DLNSSASHGVFDRRGKYIITGT 172 (405)
T ss_pred CCeEEEEEecCCcEEEEecCCce-eeccCCCc------------c-------------ccccccccccccCCCCEEEEec
Confidence 44444445555666654321 11111000 0 0011112224566 9999999
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee--ccccc
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV--KHRST 236 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~ 236 (357)
..|.+.++|..+.+++..+.......|..+.++..| .|+.-+.|+.||.|+++........ ...++...++ ..+..
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~-~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD-GEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc-CCcChhHHHHHHHhhhh
Confidence 999999999999999998843334789999999988 5999999999999998732221000 0111111111 12234
Q ss_pred eeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCc-cceEEEeecCc--eEEEecCCCeEEEeeCCCC
Q 038568 237 VNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHT-GALLCLINVGD--LLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~ 309 (357)
-.++.|+.+|.+++.++. ...++||.-..+. +++.+.|.+ .....+.|++- .+++- ..|.+++|.....
T Consensus 252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---LVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---LVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred hhheeecCCccEEEeccccceeEEEEecCCcc---eeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 467889999999988774 5579999999887 555666666 45677889887 44444 7889999987654
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=2.3e-19 Score=136.21 Aligned_cols=293 Identities=15% Similarity=0.183 Sum_probs=197.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCc---cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDY---SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~---~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~ 99 (357)
-..+|+|.+|+ +..+|++-.. .|.||.. ... +..+++.. |...|+.++|+|.. |++++.|..-.||..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~-~~~~~w~~~htls~---Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSM-LGADLWEPAHTLSE---HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEe-cCCCCceeceehhh---hCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34689999999 7888888888 9999987 443 56777777 99999999999865 999999999999998
Q ss_pred C-CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhh-
Q 038568 100 T-ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCL- 175 (357)
Q Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~- 175 (357)
. .++....+. +..+....+++.|+| +.+++|+....|.||=++...--
T Consensus 85 ~~~~~Wkptlv----------------------------LlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 85 PSGGTWKPTLV----------------------------LLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred CCCCeecccee----------------------------EEEeccceeeEeecCcCceEEeccCccEEEEEEEeccccee
Confidence 4 433322222 227788999999999 99999999999999988754421
Q ss_pred --hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccc--ccc------cccceeeeeEeeccccceeEEEEec
Q 038568 176 --ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDH--NKE------RKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 176 --~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~------~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+.+...+...|+++.|+|++ .|++|+.|+.+++|..-.-.. .+. ...-++++.++....+.+..+.|+|
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 22335678889999999999 699999999999997532111 111 0111233344445668899999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCC------------C--
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGK------------E-- 309 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~------------~-- 309 (357)
+|..|+-.+.|..+.+-|.....+. ........-+.+++.|-.+ .++.++.|..=.++.... +
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~~~--v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~ 294 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPSER--VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKA 294 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCchh--ccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccc
Confidence 9999999999999999998766431 1111111244455555333 444444442222221110 0
Q ss_pred cc-------------------eeeeee--ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 310 NC-------------------YRCMAF--LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 310 ~~-------------------~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.. .+.... -..|...|+.|.....+. ..-..+-+.+.||.+-+||
T Consensus 295 s~s~~lt~a~~kF~~~d~k~~~~~~~~~~~~~h~N~i~~l~~~~~~~---~~i~~f~t~g~Dg~~viw~ 360 (361)
T KOG1523|consen 295 SSSSPLTSAWRKFLGMDRKGRTENDRSARWGAHQNCITSLRPFAGGK---GKITKFSTSGLDGKLVIWD 360 (361)
T ss_pred cCCchhHHHHHHHhcccccccccccccccchHhHhhhhhhhecccCC---cceEEEEecCccceEEEec
Confidence 00 000000 134666677665544322 2234688999999999997
No 185
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-18 Score=147.29 Aligned_cols=212 Identities=17% Similarity=0.227 Sum_probs=141.2
Q ss_pred cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcc
Q 038568 136 RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 136 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~ 212 (357)
..+.-|...|.++.|++ .+|++|+..|.+.+|.+.+++ +++...-.++|..+.++||+ ..+....|+.|.+....
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 34457888999999999 899999999999999999988 44437788999999999999 57777889999998875
Q ss_pred ccccccccccceeeeeE-eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee-------------------
Q 038568 213 VVDHNKERKSRHMLVTT-LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA------------------- 272 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------------- 272 (357)
.......-.....+... -...++-.+.++++|..+.++-.+..|.|.+||+.+.+.+..+
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 33221111100000000 1112333456666775556666666777777766433221111
Q ss_pred ----------------------------------------------eeccCCccceEEEeecC----ceEEEecCCCeEE
Q 038568 273 ----------------------------------------------EALWGHTGALLCLINVG----DLLASGSADRTVR 302 (357)
Q Consensus 273 ----------------------------------------------~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~ 302 (357)
.....|.....+..+.+ +..++++.||.++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 01123444333333221 2789999999999
Q ss_pred EeeCCCC-------cceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 303 IWQRGKE-------NCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|-+... ..+.+...-.-|..++++++|+.||. +++.+.|++|.+||
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs--------lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS--------LLAVSFDDTITIWD 536 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc--------EEEEecCCEEEEec
Confidence 9988321 23455555556899999999999996 66777899999998
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.9e-20 Score=152.15 Aligned_cols=241 Identities=18% Similarity=0.306 Sum_probs=166.2
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCc-----cceeeeeecCccccceeeeecCCCeEEEecccccccccccc
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITAS-----RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWD 143 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (357)
|...|+.++|.|.. |++++.||+|++|++... ..+..+. .|.+|.+
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~---------------------------tfraH~g 345 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPIL---------------------------TFRAHEG 345 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeE---------------------------EEecccC
Confidence 88889999999876 999999999999999431 1122222 2349999
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEEcCc---------chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEc
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWNASN---------YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWER 211 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~ 211 (357)
+|.|++..+ ..+++|+-||+|+.|++.. ...+.....+|...++.+++++.. +|++++.||++++|+.
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 999999999 8999999999999996542 112222227899999999999876 6999999999999998
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCC-CEEEEEecCCeEEEEecccCCceeeeeecc--C--CccceEEEe
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG-SLLFSGGCDRWIVVWERERDHRMVFAEALW--G--HTGALLCLI 286 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~--~~~~v~~~~ 286 (357)
. .... +........+...++++-... ...++...-+.-.++++.....+..+.... + ....+..+.
T Consensus 426 ~------~~~~---~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 426 T------EESP---CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred C------CcCc---cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence 6 1111 111111122333455554322 122222222333333333333222211110 0 112234445
Q ss_pred ecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 287 NVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 287 ~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+.+. +.+++..|+.|+++|..++ ..+.....|...++++++.|++. +|++++.||.+++|.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~---~~l~s~~a~~~svtslai~~ng~-------~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTG---KILHSMVAHKDSVTSLAIDPNGP-------YLMSGSHDGSVRLWK 559 (577)
T ss_pred ecCCCCeeEecccCCceeccccccc---ccchheeeccceecceeecCCCc-------eEEeecCCceeehhh
Confidence 5554 8999999999999999997 77888889999999999999999 999999999999994
No 187
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3e-18 Score=125.39 Aligned_cols=238 Identities=14% Similarity=0.165 Sum_probs=167.5
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
.|.+-+++|.. |++|..+|.|.+..+.+-...... +.+...+ -...+|.++++.++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~---------------~~gk~~i-----v~eqahdgpiy~~~f~ 71 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE---------------PPGKLKI-----VPEQAHDGPIYYLAFH 71 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC---------------CCCCcce-----eeccccCCCeeeeeee
Confidence 34555677765 999999999999998643211000 0000000 0114899999999999
Q ss_pred cCeEEEEecCCeEEEEEcCcchh------hhhcc-cc-----ccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccc
Q 038568 152 QGLMYSVSWDRSFKIWNASNYKC------LESVN-KA-----HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 152 ~~~l~~~~~dg~i~iwd~~~~~~------~~~~~-~~-----~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
..+|++|+. |.|+-|..+.... +.... .. .-..|+++...|.. .++.++.|+.++.||++
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE------ 144 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE------ 144 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec------
Confidence 988888875 9999998764332 11111 11 12468899998865 57777799999999998
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc------CC-ccceEEEeecCce
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW------GH-TGALLCLINVGDL 291 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~-~~~v~~~~~~~~~ 291 (357)
.++..+.+++|...|.++.--.....+++|++||++|+||.++.+....+.... .| ...|.+++-+.++
T Consensus 145 ----~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edW 220 (325)
T KOG0649|consen 145 ----DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDW 220 (325)
T ss_pred ----CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCce
Confidence 678889999999999999985555679999999999999999998766554332 22 3457888999999
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+++|+.- .+.+|.++..+.. ++..+. .+|..+.|..+ .++++|..+.|.-|
T Consensus 221 lvCGgGp-~lslwhLrsse~t-~vfpip---a~v~~v~F~~d---------~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 221 LVCGGGP-KLSLWHLRSSEST-CVFPIP---ARVHLVDFVDD---------CVLIGGEGNHVQSY 271 (325)
T ss_pred EEecCCC-ceeEEeccCCCce-EEEecc---cceeEeeeecc---------eEEEeccccceeee
Confidence 9888754 5999999987322 233333 45777888777 56666655555544
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=141.46 Aligned_cols=256 Identities=14% Similarity=0.129 Sum_probs=177.2
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEE-ec---------CceEEeecCCeEE
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITF-HI---------TKIFTAHQDCKIR 95 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~---------~~l~~~~~d~~i~ 95 (357)
|...|.|+.|+ ..-+..++.| .+.+|.- -+......+.. ...-|....+ -+ +.|+.++.||.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~-~~~~s~~~~~~---p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSD-VSRDSVEVAKL---PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeec-ccchhhhhhhC---CcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 88889999998 4444444555 5555443 22222222222 1222211111 11 1289999999998
Q ss_pred EEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch
Q 038568 96 VWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 96 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 173 (357)
+.+-. ++....+ ..|.+.+.+-.|++ .-|++++.||.|++|. ++|.
T Consensus 89 il~k~-~rVE~sv------------------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGM 136 (737)
T KOG1524|consen 89 ILNKS-ARVERSI------------------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGM 136 (737)
T ss_pred Eeccc-chhhhhh------------------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccch
Confidence 88743 2222222 28999999999999 7899999999999998 4666
Q ss_pred hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
...++ .....+|.|++|.|+..=+.-+..+.+.+=.+. ....+...+.|.+-|.++.|++..+++++|+
T Consensus 137 LRStl-~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~----------~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 137 LRSTV-VQNEESIRCARWAPNSNSIVFCQGGHISIKPLA----------ANSKIIRWRAHDGLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred HHHHH-hhcCceeEEEEECCCCCceEEecCCeEEEeecc----------cccceeEEeccCcEEEEeecCccccceeecC
Confidence 66666 567889999999998842222334566655554 3345567789999999999999999999999
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+|-..+|||.... .+.....|..+|++++|+|+.+...++-+++| .-+...+.|..++|++|
T Consensus 206 ED~kfKvWD~~G~----~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R--------------~~~p~~GSifnlsWS~D 267 (737)
T KOG1524|consen 206 EDFRFKIWDAQGA----NLFTSAAEEYAITSVAFNPEKDYLLWSYNTAR--------------FSSPRVGSIFNLSWSAD 267 (737)
T ss_pred CceeEEeecccCc----ccccCChhccceeeeeeccccceeeeeeeeee--------------ecCCCccceEEEEEcCC
Confidence 9999999998743 23345579999999999998443333333444 12234678999999999
Q ss_pred CCCCCCCeEEEEEcCCCCeEEe
Q 038568 334 SSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
|. .++.|...|.+.+
T Consensus 268 GT-------Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 268 GT-------QATCGTSTGQLIV 282 (737)
T ss_pred Cc-------eeeccccCceEEE
Confidence 98 8999988887643
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=3.9e-19 Score=136.08 Aligned_cols=261 Identities=13% Similarity=0.138 Sum_probs=171.4
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe----cceEEEeeCC-ceEEEeccCCccccceeccccCCC-CceEEEEEec
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH----NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSS-GSVKSITFHI 82 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~-~~v~~l~~~~ 82 (357)
+...+++.+..+++ |...++.+.|. +..+.+|+.| .|++||+ ........+.-.. +. .+..+++..-
T Consensus 55 yd~~tg~~l~~fk~-----~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~-Rs~~e~a~~~~~~-~~~~~f~~ld~nc 127 (376)
T KOG1188|consen 55 YDKGTGQLLEEFKG-----PPATTNGVRFISCDSPHGVISCSSDGTVRLWDI-RSQAESARISWTQ-QSGTPFICLDLNC 127 (376)
T ss_pred EeccchhhhheecC-----CCCcccceEEecCCCCCeeEEeccCCeEEEEEe-ecchhhhheeccC-CCCCcceEeeccC
Confidence 44456778888887 77788888887 6789999999 9999999 7655555544322 33 5667777763
Q ss_pred C-c-eEEee----cCCeEEEEecCCccc-eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---
Q 038568 83 T-K-IFTAH----QDCKIRVWKITASRQ-HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--- 152 (357)
Q Consensus 83 ~-~-l~~~~----~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 152 (357)
+ + +++|. .+-.+.+||++..++ +..+. ..|.+.|+++.|+|
T Consensus 128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-----------------------------eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-----------------------------ESHNDDVTQLRFHPSDP 178 (376)
T ss_pred cCCeEEeccccccCceEEEEEEeccccchhhhhh-----------------------------hhccCcceeEEecCCCC
Confidence 3 3 44443 366799999998765 33222 38999999999999
Q ss_pred CeEEEEecCCeEEEEEcCcch---hhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeee
Q 038568 153 GLMYSVSWDRSFKIWNASNYK---CLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
++|++||.||-|.++|++... .+... -.+...|.++.|..++ ++.+-+......+|+++..+............
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~ 257 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA 257 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh
Confidence 999999999999999997542 22222 3678889999999998 69999999999999998433211100000000
Q ss_pred eEeec--cccceeEEEEec-CCCEEEEEec-CCeEEEEecc---cCCceeeeeeccC-CccceEEEeec--CceEEEecC
Q 038568 228 TTLVK--HRSTVNALALNG-DGSLLFSGGC-DRWIVVWERE---RDHRMVFAEALWG-HTGALLCLINV--GDLLASGSA 297 (357)
Q Consensus 228 ~~~~~--~~~~v~~~~~~~-~~~~l~~~~~-dg~i~vwd~~---~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~ 297 (357)
..... .-..+-.. .+| +...++.++. -|...++-+. ++........+.+ |..-|+.+.|. ++++.+|++
T Consensus 258 ~d~r~~~~~dY~I~~-~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE 336 (376)
T KOG1188|consen 258 DDLRKEDNCDYVINE-HSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE 336 (376)
T ss_pred hhHHhhhhhhheeec-ccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC
Confidence 00000 00111111 123 4444444444 5555555443 3333334445555 55566777665 349999999
Q ss_pred CCeEEEeeCC
Q 038568 298 DRTVRIWQRG 307 (357)
Q Consensus 298 dg~i~vw~~~ 307 (357)
||.+.+|...
T Consensus 337 DG~l~~Wk~~ 346 (376)
T KOG1188|consen 337 DGLLQAWKVE 346 (376)
T ss_pred CceEEEEecC
Confidence 9999999853
No 190
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=1.3e-20 Score=159.90 Aligned_cols=237 Identities=18% Similarity=0.325 Sum_probs=185.6
Q ss_pred cccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccc
Q 038568 60 SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRL 137 (357)
Q Consensus 60 ~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (357)
+.++.+.+ |...|+|+.|...+ +++|+.|..++||..+++.+.....
T Consensus 181 k~ikrLlg---H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r---------------------------- 229 (1113)
T KOG0644|consen 181 KNIKRLLG---HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR---------------------------- 229 (1113)
T ss_pred HHHHHHHh---hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC----------------------------
Confidence 44556666 99999999999876 9999999999999998886554433
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 215 (357)
+|.+.|+.++.+. .++++++.|..|++|.+..+.++..+ .+|.+.|++++|+|-. +.+.||++++||.+..-
T Consensus 230 --Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvL-rghtgavtaiafsP~~---sss~dgt~~~wd~r~~~ 303 (1113)
T KOG0644|consen 230 --GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVL-RGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEP 303 (1113)
T ss_pred --CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHH-hccccceeeeccCccc---cCCCCCceEeccccccc
Confidence 9999999999988 78899999999999999999999999 9999999999999964 78899999999987110
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC---ceE
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG---DLL 292 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l 292 (357)
. ...+...-.....-+.++.|...+.-+++++.|+.-..|.+.... .+...+.-+...+ .+.
T Consensus 304 ~------~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------~~~~~lif~t~ssd~~~~~ 368 (1113)
T KOG0644|consen 304 R------IYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------WRSNLLIFVTRSSDLSSIV 368 (1113)
T ss_pred c------ccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------hhccceEEEeccccccccc
Confidence 0 001000011123456777888888899999999998888765221 1222222222222 367
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++-.+-.+++|++.++ ..++.+.+|...+..+.++|-.. +...+++.||...|||
T Consensus 369 ~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpfn~------ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 369 VTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPFNP------RIAMSAGYDGSTIIWD 424 (1113)
T ss_pred eeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCCCc------HhhhhccCCCceEeee
Confidence 77888899999999998 77888899999999999999877 4667999999999997
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.5e-16 Score=137.61 Aligned_cols=280 Identities=29% Similarity=0.491 Sum_probs=202.1
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeC-C-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASL-N-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~-d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
......+.. |...|.+++|+ +.++++++. | .+++|+. .....+..+.+ |...|.+++|+|++ ++.
T Consensus 145 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 145 GKLIRTLEG-----HSESVTSLAFSPDGKLLASGSSLDGTIKLWDL-RTGKPLSTLAG---HTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred CeEEEEEec-----CcccEEEEEECCCCCEEEecCCCCCceEEEEc-CCCceEEeecc---CCCceEEEEEcCCcceEEE
Confidence 344555565 99999999999 668888885 8 9999999 77788888887 99999999999876 444
Q ss_pred -eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 88 -AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 88 -~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
++.|+.+++||...+..... .+ ..|.... ...|.+ ..+++++.|+.+
T Consensus 216 ~~~~d~~i~~wd~~~~~~~~~--~~---------------------------~~~~~~~-~~~~~~~~~~~~~~~~d~~~ 265 (466)
T COG2319 216 SGSSDGTIRLWDLSTGKLLRS--TL---------------------------SGHSDSV-VSSFSPDGSLLASGSSDGTI 265 (466)
T ss_pred EecCCCcEEEEECCCCcEEee--ec---------------------------CCCCcce-eEeECCCCCEEEEecCCCcE
Confidence 48999999998774443321 11 1555554 337777 588899999999
Q ss_pred EEEEcCcchh-hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeE--eeccccceeEE
Q 038568 165 KIWNASNYKC-LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT--LVKHRSTVNAL 240 (357)
Q Consensus 165 ~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 240 (357)
++|+...... +..+ ..|...+.++.+.|++ .+++++.|+.+.+||.+. ...... ...|...+..+
T Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 334 (466)
T COG2319 266 RLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET----------GKLLSSLTLKGHEGPVSSL 334 (466)
T ss_pred EEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC----------CceEEEeeecccCCceEEE
Confidence 9999987665 4444 5678999999999966 577788888999998761 222222 23677788999
Q ss_pred EEecCCCEEEEE-ecCCeEEEEecccCCceeeeeeccCCccceEEEeecC-c-eEEEecCCCeEEEeeCCCCcceeeeee
Q 038568 241 ALNGDGSLLFSG-GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-D-LLASGSADRTVRIWQRGKENCYRCMAF 317 (357)
Q Consensus 241 ~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 317 (357)
.|.+++..++.+ ..|+.+.+|+..... .......... +..+.+.+ . ....+..++.+.+|+.... .....
T Consensus 335 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 407 (466)
T COG2319 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEGHSN-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTG---SLLRN 407 (466)
T ss_pred EECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecCCce-EEEEEECCCCCEEEEecCCCceEEEecccC---eeeee
Confidence 993332455555 678999999998776 1112211221 44554444 2 3334788999999999986 33333
Q ss_pred ecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 318 LEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 318 ~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...+...+....+.+++. .+++++.++.+++|+
T Consensus 408 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 440 (466)
T COG2319 408 LDGHTSRVTSLDFSPDGK-------SLASGSSDNTIRLWD 440 (466)
T ss_pred ccCCCCcEEEEEECCCCc-------EEEEecCCCcEEEEe
Confidence 333327889999999998 899999999999985
No 192
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.82 E-value=6.3e-20 Score=145.85 Aligned_cols=252 Identities=16% Similarity=0.189 Sum_probs=197.1
Q ss_pred eeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceee
Q 038568 32 ISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
-..+.|+ |.+|+.|+.. .|-.+|+ .++.+...+. -...|.++.|..+. +++......+.|||-. +..+.+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw-~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDW-VTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN-GTELHC 205 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeec-ccceeeeeee----hhhhhhhhhhhcchHHHHhhhhceEEEecCC-CcEEee
Confidence 3456777 9999999998 9999999 8888888887 78899999998765 6666667899999965 444455
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcccccccc
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA 185 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (357)
++. ...|..+.|.| -+|++++..|.++--|+.+|+.+..+ ....+.
T Consensus 206 lk~-------------------------------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~ 253 (545)
T KOG1272|consen 206 LKR-------------------------------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGR 253 (545)
T ss_pred hhh-------------------------------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCc
Confidence 532 35788999999 67888889999999999999999999 777788
Q ss_pred EEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 186 VNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 186 v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+..++-+|-+ .+-+|...|+|.+|... ..+++..+..|.++|.++++.++|+++++.+.|..++|||++
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~----------skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPN----------SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCC----------CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeec
Confidence 8999999966 68899999999999987 566777788899999999999999999999999999999999
Q ss_pred cCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCC-CCc-ceeeeeeecCCcCceEEEEEeeCCC
Q 038568 265 RDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRG-KEN-CYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 265 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~-~~~-~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.-.++....+ ..+...++++..-+++.+....|.+|.-. .+. .....+--..-.++|..+.|+|-..
T Consensus 324 ~~~ql~t~~t----p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 324 NFYQLHTYRT----PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred cccccceeec----CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH
Confidence 8765433332 23456678888866666777789999532 211 0111111111235899999999776
No 193
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=7.6e-17 Score=124.99 Aligned_cols=194 Identities=14% Similarity=0.252 Sum_probs=156.3
Q ss_pred CccceeEEEEecceEEEeeCC---ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVHNSLLYAASLN---EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s~~~l~t~~~d---~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~ 104 (357)
-.-.|.-+-|+..++|..+.+ .+++.++ .....+..+. ...+|.++.++.++|+.+-.+. |.|||+++.+.
T Consensus 45 ~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~-Kk~~~ICe~~----fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~Mkl 118 (391)
T KOG2110|consen 45 EGVSIVEMLFSSSLVAIVSIKQPRKLKVVHF-KKKTTICEIF----FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKL 118 (391)
T ss_pred CCeEEEEeecccceeEEEecCCCceEEEEEc-ccCceEEEEe----cCCceEEEEEccceEEEEEccc-EEEEeccccee
Confidence 345677788888888887755 6999999 7778888777 7789999999999988887754 99999999887
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEE--ecCCeEEEEEcCcchhhhhccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV--SWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~--~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
+..+...+ .+...+.++.+++ .+++-= ...|.|.+||..+-+.+..+ .
T Consensus 119 LhTI~t~~---------------------------~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I-~ 170 (391)
T KOG2110|consen 119 LHTIETTP---------------------------PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI-N 170 (391)
T ss_pred ehhhhccC---------------------------CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE-E
Confidence 77776543 3445566666666 355532 23689999999999999999 8
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCe-EEEEEccccccccccccceeeeeEeecc--ccceeEEEEecCCCEEEEEecCC
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGR-IRVWERSVVDHNKERKSRHMLVTTLVKH--RSTVNALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg 256 (357)
.|.+.+.+++|+++| +|++++..|+ ||+|.+. .++.+.+++.. ...|.+++|+|++.+|++.+..+
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~----------~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP----------EGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEcC----------CccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC
Confidence 999999999999999 6999999887 6899987 44555555533 34588999999999999999999
Q ss_pred eEEEEeccc
Q 038568 257 WIVVWERER 265 (357)
Q Consensus 257 ~i~vwd~~~ 265 (357)
+|++|.++.
T Consensus 241 TVHiFKL~~ 249 (391)
T KOG2110|consen 241 TVHIFKLEK 249 (391)
T ss_pred eEEEEEecc
Confidence 999999864
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=7.7e-17 Score=133.82 Aligned_cols=272 Identities=10% Similarity=0.149 Sum_probs=163.1
Q ss_pred eEEEe-eCC-ceEEEeccCC-cc--ccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEEEecCCccceeeeeecC
Q 038568 41 LLYAA-SLN-EINVFDLISD-YS--HVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRVWKITASRQHQLVSTLP 112 (357)
Q Consensus 41 ~l~t~-~~d-~i~iw~~~~~-~~--~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~vwd~~~~~~~~~~~~~~ 112 (357)
+++++ ..+ .|++|++ .+ ++ .++.+. +.+....++++|++ |+++ ..++.|.+|+++...........
T Consensus 3 ~~y~~~~~~~~I~~~~~-~~~g~l~~~~~~~----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~- 76 (330)
T PRK11028 3 IVYIASPESQQIHVWNL-NHEGALTLLQVVD----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES- 76 (330)
T ss_pred EEEEEcCCCCCEEEEEE-CCCCceeeeeEEe----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-
Confidence 34444 566 9999999 53 32 444444 44667789999987 5444 45888999999732222222211
Q ss_pred ccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcch-hhhhcc-ccccccEE
Q 038568 113 TVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYK-CLESVN-KAHEDAVN 187 (357)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~-~~~~~~-~~~~~~v~ 187 (357)
........++++| +++++++ .++.|.+|++++.. ...... ..+.....
T Consensus 77 ---------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~ 129 (330)
T PRK11028 77 ---------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH 129 (330)
T ss_pred ---------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc
Confidence 1122356788998 6666665 48899999997432 211110 12234567
Q ss_pred EEEEecCC-eE-EEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEecc
Q 038568 188 AVVVSDNG-VV-YTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWERE 264 (357)
Q Consensus 188 ~~~~~~~~-~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~ 264 (357)
.++++|++ ++ ++...++.|.+||+....... .......... .......++|+|++++++++.. ++.|.+|+++
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~---~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV---AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc---ccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 78899998 44 556667999999997211000 0000001111 1234678999999999988876 8999999997
Q ss_pred cC-CceeeeeeccC------CccceEEEeecCc--eEEEec-CCCeEEEeeCCCCc-ceeeeeeecCCcCceEEEEEeeC
Q 038568 265 RD-HRMVFAEALWG------HTGALLCLINVGD--LLASGS-ADRTVRIWQRGKEN-CYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 265 ~~-~~~~~~~~~~~------~~~~v~~~~~~~~--~l~~~~-~dg~i~vw~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.. ........+.. +......+.++|+ +++++. .++.|.+|++.... ..+.+..... ......+.++|+
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~d 284 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHS 284 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCC
Confidence 42 12222222211 1112234555554 777765 47899999996542 2223333322 134568899999
Q ss_pred CCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 334 SSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
++ +|+++. .+++|.+|+
T Consensus 285 g~-------~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 285 GK-------YLIAAGQKSHHISVYE 302 (330)
T ss_pred CC-------EEEEEEccCCcEEEEE
Confidence 98 666555 589999983
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4.9e-18 Score=148.05 Aligned_cols=238 Identities=20% Similarity=0.253 Sum_probs=167.1
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
+-..+.|+|=. ++++.....|+|||.+.++....+.... .....|+++.+-
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~---------------------------~~~t~Vs~l~li 1118 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA---------------------------FPDTRVSDLELI 1118 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC---------------------------CCCCccceeeee
Confidence 45567777643 8888877899999999887655444321 334678888887
Q ss_pred c----CeEEEEecCCeEEEEEcCc-----chhhhhcc------ccccccEEEEEEecC-CeEEEEeCCCeEEEEEccccc
Q 038568 152 Q----GLMYSVSWDRSFKIWNASN-----YKCLESVN------KAHEDAVNAVVVSDN-GVVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 152 ~----~~l~~~~~dg~i~iwd~~~-----~~~~~~~~------~~~~~~v~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~ 215 (357)
. .++++|+.||.|+||+--. .+.+..+. .+..+.-.-+.|..+ |+|++++.-..|+|||..
T Consensus 1119 Ne~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~--- 1195 (1387)
T KOG1517|consen 1119 NEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH--- 1195 (1387)
T ss_pred cccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc---
Confidence 7 7899999999999997422 12221110 111111133455543 478888888999999987
Q ss_pred cccccccceeeeeE-eeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc--eEEEeecCc-
Q 038568 216 HNKERKSRHMLVTT-LVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA--LLCLINVGD- 290 (357)
Q Consensus 216 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--v~~~~~~~~- 290 (357)
....... ..+....|+++.-+. .|+.+++|..||.|++||.+....-..+.....|... |..+.+...
T Consensus 1196 -------~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G 1268 (1387)
T KOG1517|consen 1196 -------KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQG 1268 (1387)
T ss_pred -------cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCC
Confidence 2222222 223455677776543 5789999999999999999977655556666778777 888877664
Q ss_pred --eEEEecCCCeEEEeeCCCCcceeeeeeecCCc--C-ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 --LLASGSADRTVRIWQRGKENCYRCMAFLEGHE--K-PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~--~-~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++|+.||.|++||++.. ..........|. + ..+++..++..+ .+|+|+. +.|+||+
T Consensus 1269 ~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv~~~~yGs~lTal~VH~hap-------iiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1269 LGELVSGSQDGDIQLLDLRMS-SKETFLTIVAHWEYGSALTALTVHEHAP-------IIASGSA-QLIKIYS 1331 (1387)
T ss_pred CcceeeeccCCeEEEEecccC-cccccceeeeccccCccceeeeeccCCC-------eeeecCc-ceEEEEe
Confidence 6999999999999999974 223333333443 3 599999999998 9999998 9999996
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.81 E-value=1.7e-18 Score=144.02 Aligned_cols=240 Identities=9% Similarity=0.130 Sum_probs=181.6
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK 84 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 84 (357)
.++...+..++++++ |++.|.|++|+ |+.+|+|+.| .|.+|+. .- +-+-.+. |...|.|+.|+|-.
T Consensus 37 iyD~ndG~llqtLKg-----HKDtVycVAys~dGkrFASG~aDK~VI~W~~-kl-EG~LkYS----H~D~IQCMsFNP~~ 105 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLKG-----HKDTVYCVAYAKDGKRFASGSADKSVIIWTS-KL-EGILKYS----HNDAIQCMSFNPIT 105 (1081)
T ss_pred EEeCCCccccccccc-----ccceEEEEEEccCCceeccCCCceeEEEecc-cc-cceeeec----cCCeeeEeecCchH
Confidence 345567788889997 99999999999 9999999999 9999987 32 3333444 99999999999965
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
|++++. ...-+|..+.....+. .....+.+++|.. .+++.|-.
T Consensus 106 h~LasCsL-sdFglWS~~qK~V~K~--------------------------------kss~R~~~CsWtnDGqylalG~~ 152 (1081)
T KOG1538|consen 106 HQLASCSL-SDFGLWSPEQKSVSKH--------------------------------KSSSRIICCSWTNDGQYLALGMF 152 (1081)
T ss_pred HHhhhcch-hhccccChhhhhHHhh--------------------------------hhheeEEEeeecCCCcEEEEecc
Confidence 888776 4567888765432211 3346788899988 89999999
Q ss_pred CCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCC------eEEEEeCCCeEEEEEccccccccccccceeeeeEeec
Q 038568 161 DRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNG------VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK 232 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 232 (357)
+|+|.+-+- +++....+. .+.+.+|.+++|+|.. .+++..-..++.+|.+. ++.+..-+.
T Consensus 153 nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-----------G~~Igk~r~ 220 (1081)
T KOG1538|consen 153 NGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-----------GKQIGKDRA 220 (1081)
T ss_pred CceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-----------ceeeccccc
Confidence 999999874 444433332 4567899999999853 37788888888888875 333333333
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCC
Q 038568 233 HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~ 307 (357)
..-...|+.+.++|.+++.|+.|+.+.+|-.+ +- .+.+......+|..++..|+ +++.|+.||+|.-|++-
T Consensus 221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-Gv---rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GV---RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCCchhheeccCCcEEEEccCCCceEEEeec-Ce---EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 44456789999999999999999999999654 32 23344446677887777666 99999999999999863
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=1.7e-17 Score=141.15 Aligned_cols=250 Identities=17% Similarity=0.134 Sum_probs=173.2
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccc--cceecc-ccCCCCceEEEEEecCc----eEEeecCCeEEE
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSH--VDTFSN-DLSSSGSVKSITFHITK----IFTAHQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~--~~~~~~-~~~~~~~v~~l~~~~~~----l~~~~~d~~i~v 96 (357)
-...|+|++|+ .+++|.|..+ +|.+||+ ..+.. ...+.. ...|..+|+.+.|..+. +++++.||.|..
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~-~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDL-RKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEc-cCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 46789999999 7888888899 9999999 54433 222211 12489999999998642 999999999999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCc--
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN-- 171 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~-- 171 (357)
|+++.-.............. . ..-......++++.|.+ ..++.|+.+|.|.--+-..
T Consensus 320 W~~~~l~~P~e~~~~~~~~~-----------------~-~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKH-----------------K-GQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred eeccccccchhhcccccccc-----------------c-ccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 98765433211111110000 0 00002335688899988 8899999999988733222
Q ss_pred -ch-----hhhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 172 -YK-----CLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 172 -~~-----~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
.. .+..+ ..|.++|.++.++|=+ . +++++ |.++++|.-. ....++..+..+...|++++||
T Consensus 382 ~~~~~~~~~~~~~-~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~---------~~~~Pl~~~~~~~~~v~~vaWS 450 (555)
T KOG1587|consen 382 PAPEVSYKGHSTF-ITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSED---------VIASPLLSLDSSPDYVTDVAWS 450 (555)
T ss_pred ccccccccccccc-cccCcceEeeecCCCccceeeeec-cceeEecccc---------CCCCcchhhhhccceeeeeEEc
Confidence 11 22233 6788999999999977 3 44444 9999999864 2345666677777889999999
Q ss_pred cC-CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCCC
Q 038568 244 GD-GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 244 ~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~ 308 (357)
|- ...++++..||.|.+||+.....- +......+......+.+++ ..|++|...|.+.+|++..
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~~-Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDEE-PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhccccC-CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 94 458888889999999999855432 2222222344445566655 4899999999999999964
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=128.00 Aligned_cols=247 Identities=15% Similarity=0.167 Sum_probs=166.5
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCC-eEEEEecCCccc
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDC-KIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~-~i~vwd~~~~~~ 104 (357)
|...|+.+.-- ++.|.+-+.| .+.+|++ .....+ .. |.-.++++.|.+..+...+... ..-.++-+....
T Consensus 55 g~~~it~lq~~p~d~l~tqgRd~~L~lw~i-a~s~~i---~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde 127 (323)
T KOG0322|consen 55 GRLFITNLQSIPNDSLDTQGRDPLLILWTI-AYSAFI---SI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE 127 (323)
T ss_pred ccceeeceeecCCcchhhcCCCceEEEEEc-cCcceE---EE---eeeeccccccccceeccCCCcchhheecCCcccch
Confidence 67788888777 7889999999 9999999 543332 22 6667778888876666555433 222222221111
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-----CeEEEEecCCeEEEEEcCcchh-----
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-----GLMYSVSWDRSFKIWNASNYKC----- 174 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~----- 174 (357)
..... ..........++.. ....+.+.+..+.. -++++|..+|.+.+||+.++..
T Consensus 128 ~h~~D----~g~~tqv~i~dd~~-----------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~ 192 (323)
T KOG0322|consen 128 THKQD----GGDTTQVQIADDSE-----------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP 192 (323)
T ss_pred hhhhc----cCccceeEccCchh-----------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc
Confidence 00000 00000000000000 13445666666433 5677888999999999998733
Q ss_pred -----hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCE
Q 038568 175 -----LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 175 -----~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
.... ..|..++.++.+.+.- +=++|+.+..+..|.+.. .....+...+..-..-.|..+..-||++.
T Consensus 193 ~~~kv~~~~-ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~------s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 193 QSSKVESPN-ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH------STGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred cccccccch-hhccCcceeeeechhhcCCcCCCccccceeeeecc------ccCcccccceEEecCCCccceEEccCCcE
Confidence 3333 5688999999998643 457788888899999872 11122222233333456888999999999
Q ss_pred EEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 249 LFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
+++++.|++||||+.++.. ++..+.-|...|.+++|+++ .+|+++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl~---pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLN---PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCC---chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999887 45566679999999999998 9999999999999986
No 199
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.80 E-value=1.5e-17 Score=134.81 Aligned_cols=214 Identities=14% Similarity=0.168 Sum_probs=148.9
Q ss_pred eeEEEEe--cceEEEeeCCceEEEeccCCcc----ccceeccccCCCCceEEEEEe-----cCc--eEEeecCCeEEEEe
Q 038568 32 ISCLAVH--NSLLYAASLNEINVFDLISDYS----HVDTFSNDLSSSGSVKSITFH-----ITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 32 i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~----~~~~~~~~~~~~~~v~~l~~~-----~~~--l~~~~~d~~i~vwd 98 (357)
+....++ |++|+-.-.+.+++|+. ..+. ++....- ......|=+|+ |.+ ++.+-.-|.+.+.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~-~g~~~~~~pi~k~~y---~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSY-RGAADLSKPIDKREY---KGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEc-cCcchhccchhhhcc---cCCCCceecccccccCCCCcceEEeeccCceEEec
Confidence 4445555 77777766567888887 4321 1111111 22233344453 233 88888889999998
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcc---
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNY--- 172 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~--- 172 (357)
....+..+.+.... .-....|+++.|-| ..++.+-.+|.+.+||....
T Consensus 202 p~~~~~sklfne~r--------------------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 202 PINFEVSKLFNEER--------------------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred chhhHHHHhhhhcc--------------------------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccC
Confidence 76532222121110 02247899999999 78888888999999975310
Q ss_pred -------------------------hhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 173 -------------------------KCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 173 -------------------------~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
.++..+ ......|+..+|+||| +|++.+.||.+||||.. ..++
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w-~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd----------t~eL 324 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARW-HIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD----------TQEL 324 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCcccee-EeccccccceeEcCCCceEEEEecCceEEEeecc----------HHHH
Confidence 011111 1234578899999999 59999999999999997 3445
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+..++.--+...|++|+|||++|++|++|..|.||.+...+ .+..-.+|+.+|..++|+|
T Consensus 325 lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 325 LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecc
Confidence 55555566789999999999999999999999999998776 5667789999999999998
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-16 Score=136.47 Aligned_cols=301 Identities=17% Similarity=0.265 Sum_probs=204.6
Q ss_pred EEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-----eEEeecCCeEEEEecCCccceee
Q 038568 35 LAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-----IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 35 ~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-----l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
-.|+ +++++....+.|.||.. .+++++..+.+ |..+++.+.+.|.. +++++.||.|++||...+..++.
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~-~Tg~~i~~l~~---~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYST-ATGECITSLED---HTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEec-chHhhhhhccc---ccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEE
Confidence 3466 77777777779999999 99999999998 99999999998753 77999999999999998876655
Q ss_pred eeecCccccce----------eeeecCCCeEEEec-------------------ccccccccccccEEEEEEec-CeEEE
Q 038568 108 VSTLPTVKDRL----------IRSVLPNNYVTVRR-------------------HKKRLWLEHWDAVSDLVVKQ-GLMYS 157 (357)
Q Consensus 108 ~~~~~~~~~~~----------~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~~-~~l~~ 157 (357)
+...-...... ....+.+.+..+.. ....+...|.. -.++.+++ ..+..
T Consensus 98 ~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 98 FDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKG 176 (792)
T ss_pred EecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEE
Confidence 44321111100 11111111111110 00111122222 34566666 55555
Q ss_pred EecCCeEEEEEcCcchh---hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 158 VSWDRSFKIWNASNYKC---LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 158 ~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
...+..+.+|+..++.. .......|...+++.+++|++ +++++..||.|.+|.-- ...........+.=|
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~------~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF------GSSDDSETCTLLHWH 250 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecc------ccccccccceEEEec
Confidence 55667899999877441 111124566678999999999 59999999999999743 101122233445568
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc
Q 038568 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~ 311 (357)
...|++++|+++|.+|++|+..+.+.+|.+.++++. .+ ..-.++|..+.++++ +.+....|+.|.+-...+.+.
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fL---PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~ 326 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FL---PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI 326 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCCcc-cc---cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh
Confidence 899999999999999999999999999999988732 22 334677888888776 778888899999998755322
Q ss_pred eeeeeeec--------CCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 312 YRCMAFLE--------GHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 312 ~~~~~~~~--------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...+.-+. ...+-.+.++++|..+ .++-.+..|.|.+||
T Consensus 327 k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-------~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 327 KSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-------SLVLNGHPGHVQFYD 373 (792)
T ss_pred hhhccCccCCCccccccccccceeEEEcCCCC-------ceeecCCCceEEEEe
Confidence 12222221 1245577888999665 788888889998886
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=2.5e-17 Score=125.28 Aligned_cols=229 Identities=18% Similarity=0.165 Sum_probs=173.7
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
..++|+|.+|++++ ++.+.....|.||.....+......++. .|...|+.+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls---------------------------~Hd~~vtgv 61 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLS---------------------------EHDKIVTGV 61 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehh---------------------------hhCcceeEE
Confidence 56799999999997 8888888999999998887666665554 899999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcC-c--chhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNAS-N--YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~-~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
+|.| +.|++++.|..-++|... . .++...+ ..++...+++.|+|.+ +|++|+....|.+|-++ ..+.
T Consensus 62 dWap~snrIvtcs~drnayVw~~~~~~~WkptlvL-lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E------~ENd 134 (361)
T KOG1523|consen 62 DWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVL-LRINRAATCVKWSPKENKFAVGSGARLISVCYYE------QEND 134 (361)
T ss_pred eecCCCCceeEccCCCCccccccCCCCeeccceeE-EEeccceeeEeecCcCceEEeccCccEEEEEEEe------cccc
Confidence 9999 899999999999999983 2 2344444 6788999999999988 79999999999999886 2222
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc-----CC-------cee---eeeeccCCccceEEEee
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER-----DH-------RMV---FAEALWGHTGALLCLIN 287 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~-------~~~---~~~~~~~~~~~v~~~~~ 287 (357)
-......-+.+++.|++++|+|++-+|++|+.|+..|||..-- .. .+. +........+.+..+.|
T Consensus 135 WWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 135 WWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred eehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 2222333456778899999999999999999999999997531 10 000 01122234567888888
Q ss_pred c--CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 V--GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+ ++.|+-.+.|+.+.+-|...+. +.+.......-|..++.|..+..
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~--~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPS--ERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCc--hhccchhhccCCceeeEeecCCc
Confidence 7 5599999999999999988763 22333333347788888876653
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=135.67 Aligned_cols=222 Identities=20% Similarity=0.248 Sum_probs=157.7
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
|...|.++.|..+. ++..+.|..+.+|.--+.+....+...+..- ++. .|..+-..-.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~-------pt~--------------~h~~~rs~~~ 71 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFV-------PTD--------------MHLGGRSSGG 71 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccC-------Ccc--------------ccccccccCC
Confidence 77888899999876 7777777777666543333222222111000 000 1100000000
Q ss_pred Eec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeee
Q 038568 150 VKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 150 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
=.. +.++.++.||.+.+.+ +.++....+ .+|.+.+.+-.|+|+|. |++++.||.|++|.-. +...
T Consensus 72 g~~~d~~~i~s~DGkf~il~-k~~rVE~sv-~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-----------GMLR 138 (737)
T KOG1524|consen 72 GKGSDTLLICSNDGRFVILN-KSARVERSI-SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-----------GMLR 138 (737)
T ss_pred CCCcceEEEEcCCceEEEec-ccchhhhhh-hhhhhhhhhcccCCCCceeeeecCCceEEEEecc-----------chHH
Confidence 000 6788999999999987 467777777 89999999999999995 9999999999999854 2333
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEee
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
..+.....+|+|++|.|+.+.++-+ ..+.+.|=.+.... ..-....|.+-|++++|++. .+++|++|-..++||
T Consensus 139 Stl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 139 STVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANS---KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD 214 (737)
T ss_pred HHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeeccccc---ceeEEeccCcEEEEeecCccccceeecCCceeEEeec
Confidence 3444567789999999988766554 34557776665444 23356689999999999976 999999999999999
Q ss_pred CCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 306 RGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
... +.+..-..|..+|++++|.|+.
T Consensus 215 ~~G----~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 215 AQG----ANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred ccC----cccccCChhccceeeeeecccc
Confidence 874 6677788899999999999994
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.2e-17 Score=135.99 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=132.5
Q ss_pred ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccc
Q 038568 61 HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLW 138 (357)
Q Consensus 61 ~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (357)
+.+.+.+ |.+-|+++.|+.++ |++|+.|-.+.|||....+....+.+
T Consensus 42 lE~eL~G---H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T---------------------------- 90 (758)
T KOG1310|consen 42 LEAELTG---HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST---------------------------- 90 (758)
T ss_pred hhhhhcc---ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec----------------------------
Confidence 3456777 99999999999998 99999999999999997777766665
Q ss_pred ccccccEEEEEEec----CeEEEEecCCeEEEEEcCc----------chhhhhccccccccEEEEEEecCC--eEEEEeC
Q 038568 139 LEHWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASN----------YKCLESVNKAHEDAVNAVVVSDNG--VVYTGSA 202 (357)
Q Consensus 139 ~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~ 202 (357)
+|...|.++.|-| ..+++|+.|..|+++|+.. .+....+ ..|...|..++..|++ .+.+++.
T Consensus 91 -gHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~-~cht~rVKria~~p~~PhtfwsasE 168 (758)
T KOG1310|consen 91 -GHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCW-SCHTDRVKRIATAPNGPHTFWSASE 168 (758)
T ss_pred -ccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhh-hhhhhhhhheecCCCCCceEEEecC
Confidence 9999999999999 7899999999999999984 2233444 6788889999999988 5999999
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecc
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~ 264 (357)
||+++-+|++.....+....-...+..+...--...++..+| +..+|++|+.|-..++||.+
T Consensus 169 DGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 169 DGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred CcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 999999999832211111101111112222224567899999 55699999999999999954
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=3.9e-17 Score=128.70 Aligned_cols=190 Identities=16% Similarity=0.194 Sum_probs=138.7
Q ss_pred eEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceee
Q 038568 33 SCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 33 ~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.+++|+ |..|++|+.| ++|||++ .+...+..... |.+.|.+|.|+||+ |++.+.| ..+||+.+++-.+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~-Ps~~t~l~e~~---~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEW-PSMLTILEEIA---HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEec-CcchhhhhhHh---hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence 678888 8999999999 9999998 77777777776 99999999999998 8888998 999999999854433
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-C-----eEE-EEecCCeEEEEEcCcchh-----h
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-G-----LMY-SVSWDRSFKIWNASNYKC-----L 175 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-----~l~-~~~~dg~i~iwd~~~~~~-----~ 175 (357)
.... ........+.|.. + +++ ....-+.|+.||+..... .
T Consensus 223 ~t~~----------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~ 274 (398)
T KOG0771|consen 223 KTPF----------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL 274 (398)
T ss_pred cCCc----------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch
Confidence 3321 1122333344433 2 222 223345566665543221 2
Q ss_pred hhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec
Q 038568 176 ESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC 254 (357)
Q Consensus 176 ~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 254 (357)
.+. ......|++++++++| .++.|+.||.|.+++... .......-+.|...|+.+.|+|+.+++++.+.
T Consensus 275 ~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~---------lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 275 RKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS---------LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred hhh-hhccCcceeEEEcCCCcEEEEeccCCcEEEEEece---------eeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 222 2334579999999999 588999999999999861 12233344578999999999999999999999
Q ss_pred CCeEEEEeccc
Q 038568 255 DRWIVVWERER 265 (357)
Q Consensus 255 dg~i~vwd~~~ 265 (357)
|.++.|..+.-
T Consensus 345 ~~~~~v~~l~v 355 (398)
T KOG0771|consen 345 DNEAAVTKLAV 355 (398)
T ss_pred CCceeEEEEee
Confidence 99999988764
No 205
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=9.6e-15 Score=111.33 Aligned_cols=235 Identities=12% Similarity=0.177 Sum_probs=158.9
Q ss_pred ceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecC------CeEEEEecCC
Q 038568 31 IISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQD------CKIRVWKITA 101 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d------~~i~vwd~~~ 101 (357)
....++|+ ..-+++|..+-.+||+. +..+....-+... ..-.+..|-|-.+. .+.|+.+ ..+.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~-~P~ke~~~r~~~~-~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNC-DPFKESASRQFID-GGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEec-Cchhhhhhhcccc-CchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45558888 55566665559999999 6644333222200 12344455566666 2333332 5699999443
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcC-cchhhhhccc
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNAS-NYKCLESVNK 180 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 180 (357)
.+.+..+ ....+|.++.+.++.+++.- .+.|.+|... +.+.+..+..
T Consensus 85 ~~~i~el-------------------------------~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 85 ERCIIEL-------------------------------SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred CcEEEEE-------------------------------EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec
Confidence 3322222 45689999999997777776 4689999987 5555555521
Q ss_pred -cccccEEEEEEecCC-eEEE-EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCe
Q 038568 181 -AHEDAVNAVVVSDNG-VVYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRW 257 (357)
Q Consensus 181 -~~~~~v~~~~~~~~~-~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 257 (357)
.......+++-..+. .|+. |-.-|.|++-|+.. .. ......+.+|.+.|.|++.+.+|..+|+++..|+
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~------~~--~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT 204 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS------TK--PNAPSIINAHDSDIACVALNLQGTLVATASTKGT 204 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhh------cC--cCCceEEEcccCceeEEEEcCCccEEEEeccCcE
Confidence 223334444333333 2433 45579999999972 11 1134667899999999999999999999999997
Q ss_pred -EEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 258 -IVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 258 -i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
|||||..+++.+..++.-. ....+.+++|+++ +|+++++.|++.|+.++.
T Consensus 205 LIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 205 LIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 8999999999766654422 3467899999998 999999999999999875
No 206
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=8e-15 Score=121.80 Aligned_cols=249 Identities=12% Similarity=0.153 Sum_probs=149.7
Q ss_pred eecccccCCCCCCCccceeEEEEe--cceEEEeeC-C-ceEEEeccCCccc--cceeccccCCCCceEEEEEecCc--eE
Q 038568 15 HCIASLKIPSPDPHHMIISCLAVH--NSLLYAASL-N-EINVFDLISDYSH--VDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 15 ~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~-d-~i~iw~~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
++++.+. +.+....++++ +++|++++. + .|.+|++.+++.. +.... ..+....++|+|++ ++
T Consensus 26 ~~~~~~~------~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~----~~~~p~~i~~~~~g~~l~ 95 (330)
T PRK11028 26 TLLQVVD------VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP----LPGSPTHISTDHQGRFLF 95 (330)
T ss_pred eeeeEEe------cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec----CCCCceEEEECCCCCEEE
Confidence 4556665 44567788888 888877764 5 9999999323322 22222 33456789999987 55
Q ss_pred Eee-cCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEE-EEecC
Q 038568 87 TAH-QDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWD 161 (357)
Q Consensus 87 ~~~-~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~d 161 (357)
+++ .++.|.+|++++.... ...... .+......++++| ++++ +...+
T Consensus 96 v~~~~~~~v~v~~~~~~g~~~~~~~~~----------------------------~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 96 SASYNANCVSVSPLDKDGIPVAPIQII----------------------------EGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred EEEcCCCeEEEEEECCCCCCCCceeec----------------------------cCCCcccEeEeCCCCCEEEEeeCCC
Confidence 554 4899999999743211 111111 1123355677888 5664 45567
Q ss_pred CeEEEEEcCcchhhhh-----ccccccccEEEEEEecCCe-EEEEeC-CCeEEEEEccccccccccccceeeeeEeec--
Q 038568 162 RSFKIWNASNYKCLES-----VNKAHEDAVNAVVVSDNGV-VYTGSA-DGRIRVWERSVVDHNKERKSRHMLVTTLVK-- 232 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 232 (357)
+.|.+||+++...+.. ...........+.|+|++. ++++.. ++.|.+|++.. .....+....+..
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~------~~~~~~~~~~~~~~p 221 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD------PHGEIECVQTLDMMP 221 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC------CCCCEEEEEEEecCC
Confidence 9999999976432221 1112234567899999984 555554 89999999862 1111122222221
Q ss_pred ----cccceeEEEEecCCCEEEEEec-CCeEEEEecccCC-ceeeeeeccCCccceEEEeec--CceEEEec-CCCeEEE
Q 038568 233 ----HRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDH-RMVFAEALWGHTGALLCLINV--GDLLASGS-ADRTVRI 303 (357)
Q Consensus 233 ----~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~v 303 (357)
+......+.++|++++++++.. ++.|.+|++.... ........... .....+.++ +++|+++. .+++|.+
T Consensus 222 ~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 222 ADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred CcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCcEEE
Confidence 1122346889999999998854 7899999996543 22222221111 122344554 55666655 4899999
Q ss_pred eeCCC
Q 038568 304 WQRGK 308 (357)
Q Consensus 304 w~~~~ 308 (357)
|+++.
T Consensus 301 ~~~~~ 305 (330)
T PRK11028 301 YEIDG 305 (330)
T ss_pred EEEcC
Confidence 98853
No 207
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.75 E-value=5.5e-16 Score=119.25 Aligned_cols=251 Identities=16% Similarity=0.229 Sum_probs=181.8
Q ss_pred ccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eE
Q 038568 12 FKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IF 86 (357)
Q Consensus 12 ~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~ 86 (357)
.....++.++| |.+.|++...- ..-+++.+.| +++||--.+.++.-..+.. ....+++++.+.++. |+
T Consensus 12 ~kp~ll~~~eG-----~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 12 KKPELLSKIEG-----SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred cchhhhhhhcC-----chhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEE
Confidence 34455666675 99999987666 7889999999 9999976466666555542 146788999999875 88
Q ss_pred EeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 87 TAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
.+-..|++.-+.+...=. .... .+.+..|...+..+.|+. ..+++.+.|..+
T Consensus 85 vg~~ngtvtefs~sedfn--km~~------------------------~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~ 138 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFN--KMTF------------------------LKDYLAHQARVSAIVFSLTHEWVLSTGKDKQF 138 (404)
T ss_pred EEEecceEEEEEhhhhhh--hcch------------------------hhhhhhhhcceeeEEecCCceeEEEeccccce
Confidence 888899988887653211 1110 033348999999999988 889999999877
Q ss_pred EEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 165 KIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
.---.+.+..+..+. .....+++.+.-. .-..|...|.|..-.+. .....++..+.+|...+.+++|.|
T Consensus 139 ~~hc~e~~~~lg~Y~--~~~~~t~~~~d~~-~~fvGd~~gqvt~lr~~--------~~~~~~i~~~~~h~~~~~~l~Wd~ 207 (404)
T KOG1409|consen 139 AWHCTESGNRLGGYN--FETPASALQFDAL-YAFVGDHSGQITMLKLE--------QNGCQLITTFNGHTGEVTCLKWDP 207 (404)
T ss_pred EEEeeccCCcccceE--eeccCCCCceeeE-EEEecccccceEEEEEe--------ecCCceEEEEcCcccceEEEEEcC
Confidence 655556665555441 1111112222111 45566677777666554 224567888999999999999999
Q ss_pred CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCC
Q 038568 245 DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
..+.|++|..|..+.+||+--.+. ....+.+|...|..+.+.+- .+.+++.||.|.+|+.+.
T Consensus 208 ~~~~LfSg~~d~~vi~wdigg~~g--~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 208 GQRLLFSGASDHSVIMWDIGGRKG--TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcEEEeccccCceEEEeccCCcc--eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999999999999975443 44567789998988877664 899999999999999753
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.1e-17 Score=128.02 Aligned_cols=195 Identities=19% Similarity=0.284 Sum_probs=146.4
Q ss_pred EEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-
Q 038568 76 KSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ- 152 (357)
Q Consensus 76 ~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 152 (357)
..++|++++ +++++.||++|||++.+....... ..|...|.++.|+|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e------------------------------~~~~~eV~DL~FS~d 197 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE------------------------------IAHHAEVKDLDFSPD 197 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh------------------------------HhhcCccccceeCCC
Confidence 678899885 999999999999997655432221 27889999999999
Q ss_pred -CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-----eEEEE-eCCCeEEEEEccccccccccccce
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-----VVYTG-SADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-----~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+.|++.+.| ..+||+.+++.++.... .........+.|+.++ ++++. ..-+.|+.||+...... ..
T Consensus 198 gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-----~~ 271 (398)
T KOG0771|consen 198 GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-----NF 271 (398)
T ss_pred CcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-----cc
Confidence 799999999 89999999998887763 2334456677787666 34433 34567888877521110 01
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEE
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVR 302 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~ 302 (357)
-...........|++++.+++|++++.|+.||.|.|++..+.+..... ...|...|+.+.|+|+ ++++.+.|....
T Consensus 272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v--k~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV--KEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee--hhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 111222223457999999999999999999999999999987765443 4579999999999998 888899999888
Q ss_pred EeeCCC
Q 038568 303 IWQRGK 308 (357)
Q Consensus 303 vw~~~~ 308 (357)
|..+.-
T Consensus 350 v~~l~v 355 (398)
T KOG0771|consen 350 VTKLAV 355 (398)
T ss_pred EEEEee
Confidence 887754
No 209
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.8e-16 Score=122.77 Aligned_cols=264 Identities=14% Similarity=0.169 Sum_probs=187.7
Q ss_pred CccceeEEEEe----cceEEEeeCC-ceEEEeccCCcccccee---ccccCCCCceEEEEEecCceEEeecCCeEEEEec
Q 038568 28 HHMIISCLAVH----NSLLYAASLN-EINVFDLISDYSHVDTF---SNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKI 99 (357)
Q Consensus 28 h~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~ 99 (357)
-...|+.++|. .+.|...+.| .+..+.+ ........+ .......++|..++.....|++|-.+|.+.+|..
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~-~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVI-EEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccc-cCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 45678888887 4456666567 7877777 544433332 1111167788888888888999999999999998
Q ss_pred CCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecC--CeEEEEEcCcchh
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWD--RSFKIWNASNYKC 174 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d--g~i~iwd~~~~~~ 174 (357)
..+....... +...-...+..+.-.+ ..+++|+.. ..+.+||+++.+.
T Consensus 133 k~~d~hss~l---------------------------~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 133 KSGDLHSSKL---------------------------IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred cCCccccccc---------------------------eeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence 8554210000 0001113344444444 677789988 8899999998765
Q ss_pred hhhccc--------cccccEEEEEEecC--C-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEe
Q 038568 175 LESVNK--------AHEDAVNAVVVSDN--G-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALN 243 (357)
Q Consensus 175 ~~~~~~--------~~~~~v~~~~~~~~--~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 243 (357)
+.+-.. .-.-.++++.|.+. . .|+++..-+.+++||.+ ....++..+.-...+++++...
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~---------~qRRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR---------HQRRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc---------ccCcceeEeccccCcceeeeec
Confidence 544321 12234677888776 3 69999999999999988 3456777777778999999999
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCC
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
|+++++++|..-|.+..||++.+... ...+.+..+.+.++..+|. +++++|-|..|||+|+.+.+ ++...- -
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk---ll~kvY-v 330 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK---LLHKVY-V 330 (412)
T ss_pred CCCcEEEEecccchhheecccCceee--ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch---hhhhhh-h
Confidence 99999999999999999999987742 2346788899999999888 99999999999999999853 222211 2
Q ss_pred cCceEEEEEeeCC
Q 038568 322 EKPVKSLVAISSS 334 (357)
Q Consensus 322 ~~~v~~~~~~~~~ 334 (357)
...+++|.+.++-
T Consensus 331 Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 331 KSRLTFILLRDDV 343 (412)
T ss_pred hccccEEEecCCc
Confidence 3456777775543
No 210
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.74 E-value=3.9e-16 Score=136.16 Aligned_cols=182 Identities=19% Similarity=0.279 Sum_probs=146.4
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEE---EecCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVV---VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
..++.++.+..+.+||...+.....++........++. .+++. ++++|+.-+.|.+|+.. . ...+.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~------~---dn~p~- 169 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH------E---DNKPI- 169 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc------c---cCCcc-
Confidence 78888999999999999888777766222222222222 23444 59999999999999986 1 11222
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~ 308 (357)
.+.+|.+.+.++.++.||+++++.++|.++|+|++.+.+... ....+|...+..+.+.++.+++++.|.+.++|+.+-
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG 247 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccceeEEeccceEEEEEeccc
Confidence 678999999999999999999999999999999999887543 466789999999999999999999999999997764
Q ss_pred CcceeeeeeecCCc-CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 309 ENCYRCMAFLEGHE-KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 309 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..+..+.+|. ..|..++..++.. .++|++.||.+++||
T Consensus 248 ----~~l~~y~~h~g~~iw~~~~~~~~~-------~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 248 ----TQLEVYDEHSGKGIWKIAVPIGVI-------IKVTGGNDSTLKLWD 286 (967)
T ss_pred ----ceehhhhhhhhcceeEEEEcCCce-------EEEeeccCcchhhhh
Confidence 3344677775 4699999999887 999999999999996
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-15 Score=135.42 Aligned_cols=259 Identities=12% Similarity=0.160 Sum_probs=162.2
Q ss_pred EeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccce-eeeeecCccccceeeeecCCCeE
Q 038568 53 FDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQH-QLVSTLPTVKDRLIRSVLPNNYV 128 (357)
Q Consensus 53 w~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 128 (357)
|+. .|..+..+.. |...|..++.++.. +++|+.||+|++|+...-... ...+.
T Consensus 1034 W~p--~G~lVAhL~E---hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS------------------ 1090 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHE---HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARS------------------ 1090 (1431)
T ss_pred CCc--cceEeehhhh---ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeee------------------
Confidence 554 4577778877 99999999988643 999999999999998753221 00000
Q ss_pred EEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-------hhhhccccccccEEEEE-Eec--CC-
Q 038568 129 TVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-------CLESVNKAHEDAVNAVV-VSD--NG- 195 (357)
Q Consensus 129 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~-~~~--~~- 195 (357)
..++......+.++.+.+ +.+|.++.||.|++.++...+ +.........+.+.++. +.. ..
T Consensus 1091 ------~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1091 ------ELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred ------eEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccce
Confidence 011112456777777777 899999999999999987521 11111112233344433 222 22
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL 275 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 275 (357)
.++.+..-+.|..||++. ...-.. .......+.|++++.+|.+.++++|+..|.+.+||++=...+... .
T Consensus 1165 ~lvy~T~~~~iv~~D~r~------~~~~w~--lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw--~ 1234 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRM------RHDAWR--LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW--E 1234 (1431)
T ss_pred eEEEEEeccceEEecchh------hhhHHh--hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc--c
Confidence 478888899999999982 211111 122334578999999999999999999999999999965532211 1
Q ss_pred cCCccceEEEeec---C--ce-EEEec-CCCeEEEeeCCCCcceeeeeeec----------------CCcCceEEEEEee
Q 038568 276 WGHTGALLCLINV---G--DL-LASGS-ADRTVRIWQRGKENCYRCMAFLE----------------GHEKPVKSLVAIS 332 (357)
Q Consensus 276 ~~~~~~v~~~~~~---~--~~-l~~~~-~dg~i~vw~~~~~~~~~~~~~~~----------------~h~~~v~~~~~~~ 332 (357)
.++..++..+..+ + .. +.+++ ..+.|.+|++.++.....+..-. .+.-+.....+..
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE 1314 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc
Confidence 2344566555443 3 23 44444 57899999999874322222110 0001111112222
Q ss_pred CCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 333 SSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 333 ~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
-+ .++.+|+.|+.||.||
T Consensus 1315 ~~-------~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1315 KN-------GFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CC-------ceeeecCCccceeecc
Confidence 22 2899999999999998
No 212
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.6e-16 Score=121.83 Aligned_cols=246 Identities=13% Similarity=0.188 Sum_probs=169.0
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
|.+.|++|.|+.++ |++|+.|..+++|+++..-..+..+.+.- .-..|.+.|.|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-----------------------~~~~H~SNIF~L 111 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-----------------------MEHPHRSNIFSL 111 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-----------------------ccCccccceEEE
Confidence 99999999999876 99999999999999864321111111100 001677899999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+|.. ..+++|..+++|...|+++.+.+..+. ....+.|..+..+|-. .|++.+.++.|.+||.+ ......
T Consensus 112 ~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R------d~~~~~ 185 (609)
T KOG4227|consen 112 EFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR------DRQNPI 185 (609)
T ss_pred EEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc------CCCCCC
Confidence 9998 889999999999999999998888772 1223489999999955 79999999999999998 322222
Q ss_pred eeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeee-eccCCcc---ceEEEeecC--ceEEEecC
Q 038568 225 MLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAE-ALWGHTG---ALLCLINVG--DLLASGSA 297 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~~---~v~~~~~~~--~~l~~~~~ 297 (357)
.++.. .........+.|+| ...+|++.+..+-+-+||.+......... .+.+-.. .-+...|++ +.|.+--.
T Consensus 186 ~~~~~-AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 186 SLVLP-ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred ceeee-cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 33222 22345567889999 45688888888889999998665432111 1111111 113444544 46666666
Q ss_pred CCeEEEeeCCCCcceeeeeeecCCc-------CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 298 DRTVRIWQRGKENCYRCMAFLEGHE-------KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
...-.+||+-+...+ +..+ .|+ ..+.+++|..+. -++||+++-.|++|.
T Consensus 265 ~~~P~~~D~~S~R~~--V~k~-D~N~~GY~N~~T~KS~~F~~D~--------~v~tGSD~~~i~~Wk 320 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCF--VLKS-DHNPNGYCNIKTIKSMTFIDDY--------TVATGSDHWGIHIWK 320 (609)
T ss_pred cCCCEEeeeecccce--eEec-cCCCCcceeeeeeeeeeeecce--------eeeccCcccceEEEe
Confidence 666677888764221 2222 222 357788888775 599999999999993
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=8.6e-16 Score=120.04 Aligned_cols=249 Identities=11% Similarity=0.126 Sum_probs=170.5
Q ss_pred CCCceEEEEEecCc----eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 71 SSGSVKSITFHITK----IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 71 ~~~~v~~l~~~~~~----l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
....|..++|..++ |...+.|..+..+.+............. .......+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~------------------------~~~l~~~~I~ 109 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAK------------------------TVSLGTKSIK 109 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccccccc------------------------cccccccccc
Confidence 55678888888654 4444467777777766554333321111 1114567788
Q ss_pred EEEEecCeEEEEecCCeEEEEEcCcch----hhhhccccccccEEEEEEecCC--eEEEEeCC--CeEEEEEcccccccc
Q 038568 147 DLVVKQGLMYSVSWDRSFKIWNASNYK----CLESVNKAHEDAVNAVVVSDNG--VVYTGSAD--GRIRVWERSVVDHNK 218 (357)
Q Consensus 147 ~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d--~~i~i~d~~~~~~~~ 218 (357)
.++.....|++|-.+|.+.+|..+.+. .+..+ .....+..+.-.+.. .+++|+.. ..+.+||+.......
T Consensus 110 gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 110 GLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred chhhcCCEEEEEecCCcEEEEeccCCccccccceee--ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 888888899999999999999987433 22222 334556666666654 46779988 899999998321111
Q ss_pred ccccceeeeeEeeccccceeEEEEecC--CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE--EeecCceEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGD--GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC--LINVGDLLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~ 294 (357)
+.+....-...+. -.-.++++.|-+. ...|++++.-+++++||.+.++++.....+. ..++++ +.++++++++
T Consensus 188 ~aKNvpnD~L~Lr-VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 188 SAKNVPNDRLGLR-VPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYT 264 (412)
T ss_pred eccCCCCccccce-eeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEE
Confidence 1110000000000 1234578888886 7899999999999999999877654444443 445544 4556669999
Q ss_pred ecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|..-|.+..||.+.++ .....+++-.+.|++|..+|..+ +|+++|-|..|||+|
T Consensus 265 gn~~g~l~~FD~r~~k--l~g~~~kg~tGsirsih~hp~~~-------~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGK--LLGCGLKGITGSIRSIHCHPTHP-------VLASCGLDRYVRIHD 318 (412)
T ss_pred ecccchhheecccCce--eeccccCCccCCcceEEEcCCCc-------eEEeeccceeEEEee
Confidence 9999999999999973 22334888999999999999998 999999999999987
No 214
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=1.2e-16 Score=125.38 Aligned_cols=162 Identities=25% Similarity=0.414 Sum_probs=135.2
Q ss_pred ccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 182 HEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 182 ~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
...++.++.|.++. ++++|+.|..|++|.+........ ....+....+..|...|+++.|+|+|..|++|+.+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 35678888888876 699999999999999874433221 134566778889999999999999999999999999999
Q ss_pred EEecc--------c-----CCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 260 VWERE--------R-----DHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 260 vwd~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
+|... + .+.....+.+.+|...+..++|.++ ++++++.|+.+++||+..+ +.+..+..|..-
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~y 167 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG---QLLAILDDHEHY 167 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc---eeEeeccccccc
Confidence 99876 2 2234455677789999999999887 9999999999999999998 778889999999
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
|..++|.|-++ ++++-+.|...+
T Consensus 168 vqgvawDpl~q-------yv~s~s~dr~~~ 190 (434)
T KOG1009|consen 168 VQGVAWDPLNQ-------YVASKSSDRHPE 190 (434)
T ss_pred cceeecchhhh-------hhhhhccCcccc
Confidence 99999999998 898888887444
No 215
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.1e-15 Score=130.78 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=149.9
Q ss_pred CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---CeEEEEecCCccceeeeeecCccccceee
Q 038568 47 LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD---CKIRVWKITASRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 47 ~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 120 (357)
.+ .|.+||. +... .+.+.. +...+.+.+|+|++ |+.++.+ ..|.+||+.+++.. .+...+
T Consensus 182 ~~~~i~i~d~-dg~~-~~~lt~---~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-~l~~~~-------- 247 (429)
T PRK01742 182 QPYEVRVADY-DGFN-QFIVNR---SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-VVASFR-------- 247 (429)
T ss_pred ceEEEEEECC-CCCC-ceEecc---CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-EEecCC--------
Confidence 36 9999998 5544 455665 78899999999997 6666543 46999999876532 222111
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec--CeEEEE-ecCCeEEEE--EcCcchhhhhccccccccEEEEEEecCC
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSV-SWDRSFKIW--NASNYKCLESVNKAHEDAVNAVVVSDNG 195 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 195 (357)
++ ....+|+| +.|+.+ +.+|.+.|| |+.+++. ..+ ..+...+....|+|+|
T Consensus 248 -------------------g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l-t~~~~~~~~~~wSpDG 303 (429)
T PRK01742 248 -------------------GH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL-TSGAGNNTEPSWSPDG 303 (429)
T ss_pred -------------------Cc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee-ccCCCCcCCEEECCCC
Confidence 22 33578999 566665 467866555 6655543 344 3455667889999999
Q ss_pred e-EE-EEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeee
Q 038568 196 V-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 196 ~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
. |+ ++..++...+|++.. ..... ..+ .+.. ....|+|+|++|+..+.++ +.+||+.++.......
T Consensus 304 ~~i~f~s~~~g~~~I~~~~~------~~~~~---~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 304 QSILFTSDRSGSPQVYRMSA------SGGGA---SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CEEEEEECCCCCceEEEEEC------CCCCe---EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 4 44 444678889998762 11111 111 2332 4578999999998887765 6669998776432211
Q ss_pred eccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 274 ALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
. ....-..++.++++|+.++.++.+.+|++.+.. ......+..|.+.+...+|+|-.
T Consensus 371 ~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 371 T---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred C---CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCCCC
Confidence 1 111222334444588888889988888764210 14566677888889999999853
No 216
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4e-15 Score=122.07 Aligned_cols=280 Identities=14% Similarity=0.184 Sum_probs=185.1
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEE-EeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLY-AASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~-t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
-++++.|. |...-+.|..+ |+|+. ||... .|++||+ ..... .|.... ....|.-.-.+.|. ++.
T Consensus 42 ieLiQdfe------~p~ast~ik~s~DGqY~lAtG~YKP~ikvydl-anLSL--KFERhl-Dae~V~feiLsDD~SK~v~ 111 (703)
T KOG2321|consen 42 IELIQDFE------MPTASTRIKVSPDGQYLLATGTYKPQIKVYDL-ANLSL--KFERHL-DAEVVDFEILSDDYSKSVF 111 (703)
T ss_pred HHHHHhcC------CccccceeEecCCCcEEEEecccCCceEEEEc-cccee--eeeecc-cccceeEEEeccchhhheE
Confidence 34566676 88889999998 77655 55577 9999999 54322 233200 23344445555554 666
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
-..|.+|.+-.--..- ..+. -...-.+++++. .-|+.++....|+
T Consensus 112 L~~DR~IefHak~G~h--y~~R-------------------------------IP~~GRDm~y~~~scDly~~gsg~evY 158 (703)
T KOG2321|consen 112 LQNDRTIEFHAKYGRH--YRTR-------------------------------IPKFGRDMKYHKPSCDLYLVGSGSEVY 158 (703)
T ss_pred eecCceeeehhhcCee--eeee-------------------------------cCcCCccccccCCCccEEEeecCcceE
Confidence 6778877665432111 1110 012234455555 3344445556788
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc-----cceeE
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR-----STVNA 239 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~ 239 (357)
-++++.|+-+..+ ......++++..++.. +|++|+.+|.|-.||.+.-... ...........|. ..|++
T Consensus 159 RlNLEqGrfL~P~-~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv----~~l~~~~~v~s~pg~~~~~svTa 233 (703)
T KOG2321|consen 159 RLNLEQGRFLNPF-ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV----GTLDAASSVNSHPGGDAAPSVTA 233 (703)
T ss_pred EEEcccccccccc-ccccccceeeeecCccceEEecccCceEEEecchhhhhh----eeeecccccCCCccccccCcceE
Confidence 8999999999998 6667899999999865 7888888999999999821110 0111111112222 34999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCCcceeee
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKENCYRCM 315 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~ 315 (357)
+.|+.+|-.+++|+.+|.+.|||+++.+++.. .-.+...+|..+.|.+. .+++ .....++|||-.+++..
T Consensus 234 l~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~--kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~--- 307 (703)
T KOG2321|consen 234 LKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV--KDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPM--- 307 (703)
T ss_pred EEecCCceeEEeeccCCcEEEEEcccCCceee--cccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCce---
Confidence 99999999999999999999999998876422 22344567788888543 4444 44678999999998543
Q ss_pred eeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 316 AFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 316 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+.. ...++.+++.|++. +++++-.++.+..
T Consensus 308 asiEp-t~~lND~C~~p~sG-------m~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 308 ASIEP-TSDLNDFCFVPGSG-------MFFTANESSKMHT 339 (703)
T ss_pred eeccc-cCCcCceeeecCCc-------eEEEecCCCccee
Confidence 43333 34599999999987 8888887776543
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.5e-14 Score=110.99 Aligned_cols=286 Identities=13% Similarity=0.134 Sum_probs=171.3
Q ss_pred cceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCcc
Q 038568 30 MIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 30 ~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~ 103 (357)
..+..++|+ -.-+|++..| .|++|+- .. .....++. .....|+|++|-|.. |+.|+. +-|.+|..+...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~k-ss-t~pt~Lks--~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDK-SS-TCPTKLKS--VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEecc-CC-CCCceecc--hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 456677888 4457788888 9999998 54 55555553 256789999999975 888887 568999876432
Q ss_pred ceeee-eecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcchhhhhcc
Q 038568 104 QHQLV-STLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 104 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~ 179 (357)
..... .........+ ....+| .+|++++|++ ..+++++. |..|.|||..++..+.-.
T Consensus 174 n~~r~~~~~s~~~~qv-----------------l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~- 234 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQV-----------------LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI- 234 (445)
T ss_pred ccccccccccccchhh-----------------eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-
Confidence 22111 1000000000 000144 7899999999 66777665 578999999998876655
Q ss_pred ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeE
Q 038568 180 KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWI 258 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 258 (357)
....+.+.-+.|+||+ +|+++..|+..++|+.. ......... ...+.|....|+|+|++|+..+. |.-
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~---------q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s-gsp 303 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN---------QSWTKERWI-LGSGRVQTACWSPCGSFLLFACS-GSP 303 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhc---------ccceeccee-ccCCceeeeeecCCCCEEEEEEc-CCc
Confidence 4566778899999999 69999999999999654 122222222 23458999999999997665543 334
Q ss_pred EEEecccCCc------------eeeeeec------cC---CccceEEEeecCc--eEEEecCCC--------eEEEeeCC
Q 038568 259 VVWERERDHR------------MVFAEAL------WG---HTGALLCLINVGD--LLASGSADR--------TVRIWQRG 307 (357)
Q Consensus 259 ~vwd~~~~~~------------~~~~~~~------~~---~~~~v~~~~~~~~--~l~~~~~dg--------~i~vw~~~ 307 (357)
++|.+.-..+ ...+..+ .+ ..+..-+++|+|. +||+.-..+ .|.+||.+
T Consensus 304 ~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence 4554432111 1111111 01 1345566777654 888765543 47778887
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
..........-......-..++|+|-.+ ...+|..+=.-|.+.
T Consensus 384 ~sp~vels~cg~i~ge~P~~IsF~pl~n----~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 384 KSPPVELSYCGMIGGEYPAYISFGPLKN----EGRLLSIAWSTGRIQ 426 (445)
T ss_pred ccCceEEEecccccCCCCceEEeeeccc----CCcEEEEEeccCceE
Confidence 6433332211111122244566665432 112444444445544
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.70 E-value=5.3e-15 Score=113.36 Aligned_cols=262 Identities=11% Similarity=0.145 Sum_probs=176.1
Q ss_pred EEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeee
Q 038568 36 AVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 36 ~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
+|| |+++|+++.-.+.|-|. ++.+..+.|. --..|.-+.|..+. |.....|+.|.+|++...+....+.
T Consensus 15 ~fSp~g~yiAs~~~yrlviRd~-~tlq~~qlf~----cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId- 88 (447)
T KOG4497|consen 15 SFSPCGNYIASLSRYRLVIRDS-ETLQLHQLFL----CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID- 88 (447)
T ss_pred eECCCCCeeeeeeeeEEEEecc-chhhHHHHHH----HHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-
Confidence 455 99999997668888898 8877777766 45678889999876 7777889999999999887766665
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
.....+.+++|+| ..|.+...+-.|.+|.+.+.+....- -.+..+.
T Consensus 89 -----------------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~k 137 (447)
T KOG4497|consen 89 -----------------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVK 137 (447)
T ss_pred -----------------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCce
Confidence 4457899999999 56777888999999999876654332 3344557
Q ss_pred EEEEecCCeEEEEeC--C-----------------------------------CeEEEEEccccccccccccceeeeeEe
Q 038568 188 AVVVSDNGVVYTGSA--D-----------------------------------GRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~--d-----------------------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
.++|+|+|++++-.. | ..+.+||-- .+...-.
T Consensus 138 g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~-----------Leykv~a 206 (447)
T KOG4497|consen 138 GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV-----------LEYKVYA 206 (447)
T ss_pred eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch-----------hhheeee
Confidence 788888886433221 1 122333321 0000001
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCce-----------------------------------------
Q 038568 231 VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRM----------------------------------------- 269 (357)
Q Consensus 231 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------------------------- 269 (357)
....-.+..++|+|.+++|++|+.|+.+||.+--+-+..
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 122356888999999999999999999988653211000
Q ss_pred ----------------eeeee------ccCCccceEEEeecCc--eEEEecC--CCeEEEeeCCCCcceeeeeeecCCcC
Q 038568 270 ----------------VFAEA------LWGHTGALLCLINVGD--LLASGSA--DRTVRIWQRGKENCYRCMAFLEGHEK 323 (357)
Q Consensus 270 ----------------~~~~~------~~~~~~~v~~~~~~~~--~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~h~~ 323 (357)
..+.. .......+--++|+++ ++++-.+ -+.+.+||+++.+ +...-....
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avLiQk~ 362 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVLIQKH 362 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhhhhcc
Confidence 00000 0111223455677777 5555543 3689999999752 333334567
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+|....|+|..+ .|+.+.....+.+|
T Consensus 363 piraf~WdP~~p-------rL~vctg~srLY~W 388 (447)
T KOG4497|consen 363 PIRAFEWDPGRP-------RLVVCTGKSRLYFW 388 (447)
T ss_pred ceeEEEeCCCCc-------eEEEEcCCceEEEE
Confidence 999999999988 77766666678877
No 219
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=7.4e-17 Score=128.65 Aligned_cols=224 Identities=12% Similarity=0.218 Sum_probs=176.2
Q ss_pred CceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
-.-..+.|+.++ |+.|+..|.+..+|+.+.+....+.. ...|.++.|
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-------------------------------~Etv~Dv~~ 178 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-------------------------------METVRDVTF 178 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-------------------------------hhhhhhhhh
Confidence 345678888877 99999999999999999877665543 356888888
Q ss_pred ec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 151 KQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 151 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
.. ..+++......+.|||- .|..+..+ .....|..+.|.|.- .|++++..|.++--|+. .++.+.
T Consensus 179 LHneq~~AVAQK~y~yvYD~-~GtElHCl--k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS----------~GklVa 245 (545)
T KOG1272|consen 179 LHNEQFFAVAQKKYVYVYDN-NGTELHCL--KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVS----------TGKLVA 245 (545)
T ss_pred hcchHHHHhhhhceEEEecC-CCcEEeeh--hhcCchhhhcccchhheeeecccCCceEEEeec----------hhhhhH
Confidence 87 55556666789999994 56666666 344678899999988 48888999999999998 566777
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
.+....+.+..+.-+|-...+-+|..+|+|.+|.....+. +..+..|.++|.+++++++ |++|.+.|..++|||+
T Consensus 246 ~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP---LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 246 SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP---LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDL 322 (545)
T ss_pred HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch---HHHHHhcCCCcceEEECCCCcEEeecccccceeEeee
Confidence 7777788899999999888999999999999999988774 4456679999999998766 9999999999999999
Q ss_pred CCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 307 GKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 307 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++-. .+.+... ..+...+++|..+ +||.+ ....|.+|
T Consensus 323 R~~~---ql~t~~t-p~~a~~ls~Sqkg--------lLA~~-~G~~v~iw 359 (545)
T KOG1272|consen 323 RNFY---QLHTYRT-PHPASNLSLSQKG--------LLALS-YGDHVQIW 359 (545)
T ss_pred cccc---ccceeec-CCCcccccccccc--------ceeee-cCCeeeee
Confidence 9853 2333322 3467788888876 45444 44467777
No 220
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=8.8e-14 Score=106.17 Aligned_cols=174 Identities=16% Similarity=0.252 Sum_probs=131.0
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecC-CccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKIT-ASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
.|.|||= ....++.++. ...+|.++.+.++.|++.-. +.|.||.+. ..+....+.+....
T Consensus 76 kviIWDD-~k~~~i~el~----f~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~et~~NP------------- 136 (346)
T KOG2111|consen 76 KVIIWDD-LKERCIIELS----FNSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIETRSNP------------- 136 (346)
T ss_pred eEEEEec-ccCcEEEEEE----eccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeeecccCC-------------
Confidence 6999996 6777888887 78999999999999887765 789999987 55555555543211
Q ss_pred EEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEEe
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTGS 201 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~~ 201 (357)
....+++-.. .+|+ -|-.-|.|+|-|+...+. -..+ .+|...|.|++.+.+| ++++++
T Consensus 137 ---------------kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I-~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 137 ---------------KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII-NAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred ---------------CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE-EcccCceeEEEEcCCccEEEEec
Confidence 1122222222 2222 344568999999986555 2444 8999999999999999 699999
Q ss_pred CCCe-EEEEEccccccccccccceeeeeEeec--cccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 202 ADGR-IRVWERSVVDHNKERKSRHMLVTTLVK--HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 202 ~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
..|+ |||||.. .+..+.+++. ....|++|+|+|++.+|++++.-|+++||.++...
T Consensus 201 tkGTLIRIFdt~----------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 201 TKGTLIRIFDTE----------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cCcEEEEEEEcC----------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 9987 7999987 4455555553 24679999999999999999999999999997543
No 221
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.67 E-value=1.3e-14 Score=111.85 Aligned_cols=278 Identities=14% Similarity=0.221 Sum_probs=168.2
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc----ccceecccc---------CCCCceEEEEEecCc----eEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS----HVDTFSNDL---------SSSGSVKSITFHITK----IFT 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~----~~~~~~~~~---------~~~~~v~~l~~~~~~----l~~ 87 (357)
-.+-|.++.|+ |++||||..+ .|.++.-.+... ....++... .-...|..+.|.+++ ++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35679999999 9999999999 999997622222 122232200 124678999999764 788
Q ss_pred eecCCeEEEEecCCccceeeeeecCccc-----cceeeeecCCCeEEEeccccccc-ccccccEEEEEEec-CeEEEEec
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVK-----DRLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSDLVVKQ-GLMYSVSW 160 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~l~~~~~ 160 (357)
.+.|.+|++|.+........-..++... ..+..+........+.....+++ ..|.-.|+++.++. ...+..+.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8899999999987544322111110000 00000111111112222222333 57899999999999 44444555
Q ss_pred CCeEEEEEcCcch-hhh--hcc----ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccc------ccee
Q 038568 161 DRSFKIWNASNYK-CLE--SVN----KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERK------SRHM 225 (357)
Q Consensus 161 dg~i~iwd~~~~~-~~~--~~~----~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~ 225 (357)
|=.|.+|+++--. ... .++ ......|++..|+|.. .++-.+..|+|++.|++......... ....
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 7889999876321 111 110 1223568889999976 58888999999999998322111000 0011
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCc------------cce---EEEeecCc
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT------------GAL---LCLINVGD 290 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------------~~v---~~~~~~~~ 290 (357)
...-+.+--..|..+.|+++|+++++-+. -+|++||+.....+.. +..-|. ..| ..++|+|+
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~--t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE--TYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce--EEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11112223356889999999999998654 5699999964443222 222221 122 45678887
Q ss_pred --eEEEecCCCeEEEeeCCC
Q 038568 291 --LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~ 308 (357)
+++||+..+..++++...
T Consensus 341 ~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cceEecccccceEEEecCCC
Confidence 999999999999999544
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.66 E-value=5e-15 Score=120.49 Aligned_cols=199 Identities=17% Similarity=0.266 Sum_probs=147.3
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhcc---ccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccc--------
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVN---KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKE-------- 219 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~-------- 219 (357)
--++.|-.-|.+.+.|....+....+. ...+..++|+.|-|.+ .++++-.+|.+++||.........
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 456777778999999987643333221 2235789999999866 688889999999998643211100
Q ss_pred ----------cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 220 ----------RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 220 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
......++..+.--.+.|...+|+|||++||+.+.||.+||||..+.+.+ ..++..-+..+|++|+|
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl---g~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL---GVMKSYFGGLLCVCWSP 342 (636)
T ss_pred CCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHH---HHHHhhccceEEEEEcC
Confidence 00111233334444567899999999999999999999999999987643 33333456789999998
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC----------------------------CCCC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS----------------------------SASN 339 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------------------------~~~~ 339 (357)
| +|++|++|--|.||.+... +.+..-++|+++|+.++|.|--. ..+.
T Consensus 343 DGKyIvtGGEDDLVtVwSf~er---RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~ 419 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEER---RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSA 419 (636)
T ss_pred CccEEEecCCcceEEEEEeccc---eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCc
Confidence 8 9999999999999999986 88999999999999999984110 0011
Q ss_pred -------------CeEEEEEcCCCCeEEecC
Q 038568 340 -------------GIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 340 -------------~~~~l~s~~~dg~v~~wd 357 (357)
..+.|.+.|.|-++.+||
T Consensus 420 ~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWD 450 (636)
T KOG2394|consen 420 EGCPLSSFNRINSVTYRFGSVGQDTQLCLWD 450 (636)
T ss_pred CCCcccccccccceEEEeecccccceEEEEe
Confidence 236799999999999998
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=2.4e-15 Score=120.88 Aligned_cols=248 Identities=15% Similarity=0.237 Sum_probs=175.4
Q ss_pred ceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccc
Q 038568 63 DTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLE 140 (357)
Q Consensus 63 ~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (357)
..+.. |.+.|..+.|+..+ |++++.|..|.+||+...+....+.. +
T Consensus 136 ~kL~~---H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~S-----------------------------G 183 (559)
T KOG1334|consen 136 KKLNK---HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFES-----------------------------G 183 (559)
T ss_pred hcccC---CCCccceeeecccCceeeccCccceEEeehhhccCccccccc-----------------------------c
Confidence 34554 99999999999876 99999999999999988765444332 8
Q ss_pred ccccEEEEEEec----CeEEEEecCCeEEEEEcCc-chhh--hhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEc
Q 038568 141 HWDAVSDLVVKQ----GLMYSVSWDRSFKIWNASN-YKCL--ESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWER 211 (357)
Q Consensus 141 ~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~-~~~~--~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~ 211 (357)
|...|..-.|.| ..+++++.||.+++=.+.. +.+. ..+ ..|.++|..++.-|+. .|.+++.|+.+.-+|+
T Consensus 184 H~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl-~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dl 262 (559)
T KOG1334|consen 184 HCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRL-APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDL 262 (559)
T ss_pred cccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceec-ccccCccceeeecCCCCCcccccccccceeeeee
Confidence 999998888988 7899999999999877643 2222 233 6789999999999987 4999999999999999
Q ss_pred cccccccccccceeeeeEeecccc---ceeEEEEecCC-CEEEEEecCCeEEEEecccCCcee---eeeec------cCC
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRS---TVNALALNGDG-SLLFSGGCDRWIVVWERERDHRMV---FAEAL------WGH 278 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~------~~~ 278 (357)
+ ......... ....+.. ..+.++.+|.. ..+++|+.|..+++||.+.-..-. .+..+ ...
T Consensus 263 r------~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~ 335 (559)
T KOG1334|consen 263 R------QDVPAEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD 335 (559)
T ss_pred c------cCCccceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC
Confidence 8 322222222 2222222 56788999944 489999999999999987432210 11111 122
Q ss_pred ccceEEEeecCc--eEEEecCCCeEEEeeCCCCcc---------eeeee-eecCCcC--ceEEEEE-eeCCCCCCCCeEE
Q 038568 279 TGALLCLINVGD--LLASGSADRTVRIWQRGKENC---------YRCMA-FLEGHEK--PVKSLVA-ISSSSSASNGIVS 343 (357)
Q Consensus 279 ~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~---------~~~~~-~~~~h~~--~v~~~~~-~~~~~~~~~~~~~ 343 (357)
...|+++.|+.+ -|+++-.|-.|+++.-.-+.. ...+. ..++|.. .|.++-| -|... +
T Consensus 336 ~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-------y 408 (559)
T KOG1334|consen 336 PVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-------Y 408 (559)
T ss_pred cccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-------e
Confidence 345789999833 555555566799995443211 01122 2677764 4666654 46666 9
Q ss_pred EEEcCCCCeEEecC
Q 038568 344 IGSGSLNGEIKVWD 357 (357)
Q Consensus 344 l~s~~~dg~v~~wd 357 (357)
+++||+=|.|.|||
T Consensus 409 VvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWD 422 (559)
T ss_pred EEecCccceEEEEe
Confidence 99999999999997
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1.5e-13 Score=105.57 Aligned_cols=306 Identities=12% Similarity=0.107 Sum_probs=186.4
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cc-eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NS-LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~-~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
+..+.+..+.+. --+.|.-+.|. .. .|..+..+ .|.+|++ ...+-...+.. ...++.+++|+|++
T Consensus 35 d~~tlq~~qlf~------cldki~yieW~ads~~ilC~~yk~~~vqvwsl-~Qpew~ckIde---g~agls~~~WSPdgr 104 (447)
T KOG4497|consen 35 DSETLQLHQLFL------CLDKIVYIEWKADSCHILCVAYKDPKVQVWSL-VQPEWYCKIDE---GQAGLSSISWSPDGR 104 (447)
T ss_pred ccchhhHHHHHH------HHHHhhheeeeccceeeeeeeeccceEEEEEe-ecceeEEEecc---CCCcceeeeECCCcc
Confidence 334444444444 33557778887 33 44555677 9999999 77777777776 78899999999998
Q ss_pred --eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEE-Eecccc----------------cccccccccE
Q 038568 85 --IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT-VRRHKK----------------RLWLEHWDAV 145 (357)
Q Consensus 85 --l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~~~~~~~~~v 145 (357)
|.+...+-.|.||.+.+.+...... +.... ....+.+++... +..... +.+.-.+-..
T Consensus 105 hiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~-kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dl 181 (447)
T KOG4497|consen 105 HILLTSEFDLRITVWSLNTQKGYLLPH--PKTNV-KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDL 181 (447)
T ss_pred eEeeeecceeEEEEEEeccceeEEecc--cccCc-eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccc
Confidence 7788889999999998765422111 11111 112222222211 111110 1111222334
Q ss_pred EEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccc-----
Q 038568 146 SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKE----- 219 (357)
Q Consensus 146 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~----- 219 (357)
+.+.|+|+ +..+.+||.--.-.+..+ ...-.+..++|+|.+ .|++|+.|+.+|+.+--+-+...+
T Consensus 182 tgieWsPd-------g~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~ 252 (447)
T KOG4497|consen 182 TGIEWSPD-------GNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLC 252 (447)
T ss_pred cCceECCC-------CcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccch
Confidence 55666651 345677875333333332 344678899999977 599999999998755321110000
Q ss_pred ---------------------------------------c------ccceeeeeEe------eccccceeEEEEecCCCE
Q 038568 220 ---------------------------------------R------KSRHMLVTTL------VKHRSTVNALALNGDGSL 248 (357)
Q Consensus 220 ---------------------------------------~------~~~~~~~~~~------~~~~~~v~~~~~~~~~~~ 248 (357)
. ......+..+ ......+.-++|++|..+
T Consensus 253 s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y 332 (447)
T KOG4497|consen 253 SYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTY 332 (447)
T ss_pred hccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceE
Confidence 0 0000011111 112334667999999988
Q ss_pred EEEEec--CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 249 LFSGGC--DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 249 l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
+++-.. -+.+-+||++..+.. .......+|.++.|+|. .|+.+.....+++|...-. ..+... +..-.
T Consensus 333 ~aTrnd~~PnalW~Wdlq~l~l~----avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~---~~V~vP-~~GF~ 404 (447)
T KOG4497|consen 333 AATRNDKYPNALWLWDLQNLKLH----AVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP---RVVGVP-KKGFN 404 (447)
T ss_pred EeeecCCCCceEEEEechhhhhh----hhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc---eEEecC-CCCce
Confidence 887644 356999999876532 22235678999999987 6666666677999988753 334332 23367
Q ss_pred eEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 325 VKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 325 v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
|..+.|.-++. .++-.+.|..
T Consensus 405 i~~l~W~~~g~-------~i~l~~kDaf 425 (447)
T KOG4497|consen 405 IQKLQWLQPGE-------FIVLCGKDAF 425 (447)
T ss_pred eeeEEecCCCc-------EEEEEcCCce
Confidence 99999999998 8888888854
No 225
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.5e-14 Score=119.97 Aligned_cols=186 Identities=13% Similarity=0.026 Sum_probs=118.8
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchh--hhhccccccccEEEEEEecCC-eEEEE-eCCCeEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG-VVYTG-SADGRIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~-~l~~~-~~d~~i~i~d 210 (357)
.+...+.+..|+| +.|+.++.+ ..|++||+.+++. +..+ .......+|+||| +|+.+ ..+|.+.+|.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~----~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF----RGHNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC----CCccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 5667899999999 677776653 3699999988753 3222 2233468999999 46655 4688776665
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+.. .......+..+...+....|+|||+.|+..+ .+|...||+++....... .+ .+.. ....|+|
T Consensus 277 ~d~---------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~--~l-~~~~--~~~~~Sp 342 (429)
T PRK01742 277 MGA---------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS--LV-GGRG--YSAQISA 342 (429)
T ss_pred EEC---------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Ee-cCCC--CCccCCC
Confidence 431 0112233445666788899999999777554 578888888754322111 11 2222 2334554
Q ss_pred --ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 290 --DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 290 --~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
++|+..+.++ +.+||+.+++... + ...+ ....+.|+|+++ +|+.++.+|.+.+|
T Consensus 343 DG~~ia~~~~~~-i~~~Dl~~g~~~~-l--t~~~--~~~~~~~sPdG~-------~i~~~s~~g~~~~l 398 (429)
T PRK01742 343 DGKTLVMINGDN-VVKQDLTSGSTEV-L--SSTF--LDESPSISPNGI-------MIIYSSTQGLGKVL 398 (429)
T ss_pred CCCEEEEEcCCC-EEEEECCCCCeEE-e--cCCC--CCCCceECCCCC-------EEEEEEcCCCceEE
Confidence 4777777665 5669998874221 1 1122 235678999998 88888888887766
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=7.1e-13 Score=113.34 Aligned_cols=231 Identities=10% Similarity=0.046 Sum_probs=140.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee---cCCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH---QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.+||. +... .+.+.. +...+.+.+|+||+ |+..+ .+..|.+|++.+++.. .+..+
T Consensus 180 ~l~~~d~-dg~~-~~~lt~---~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~------------ 241 (429)
T PRK03629 180 ELRVSDY-DGYN-QFVVHR---SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASF------------ 241 (429)
T ss_pred eEEEEcC-CCCC-CEEeec---CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCC------------
Confidence 7999998 5543 344444 67789999999997 55433 3457999999876532 22211
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEEE-EecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS-VSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
...+....|+| +.|+. .+.+| .|.+||+.+++..... .+...+....|+|+|. |
T Consensus 242 ------------------~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt--~~~~~~~~~~wSPDG~~I 301 (429)
T PRK03629 242 ------------------PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNL 301 (429)
T ss_pred ------------------CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc--CCCCCcCceEECCCCCEE
Confidence 12234578999 55554 34455 5889999877654332 3345677899999994 6
Q ss_pred EEEeC-CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceeeee
Q 038568 198 YTGSA-DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVFAE 273 (357)
Q Consensus 198 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~ 273 (357)
+..+. ++...+|.+... . .. ...+...........|+|||++|+..+.+ ..|.+||+.++... .+.
T Consensus 302 ~f~s~~~g~~~Iy~~d~~----~----g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt 371 (429)
T PRK03629 302 AYTSDQAGRPQVYKVNIN----G----GA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT 371 (429)
T ss_pred EEEeCCCCCceEEEEECC----C----CC-eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC
Confidence 55554 455555544310 1 11 12222233445678999999988876543 35888999877532 222
Q ss_pred eccCCccceEEEeecCceEEEecCCCe---EEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 274 ALWGHTGALLCLINVGDLLASGSADRT---VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~~l~~~~~dg~---i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
. .....-..++.++.+|+.++.++. +.++++.. .....+.+|.+.+...+|+|-
T Consensus 372 ~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 372 D--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCCcccCCC
Confidence 1 111222234444457777776653 67777754 334556678888999999873
No 227
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=6.7e-13 Score=100.39 Aligned_cols=261 Identities=16% Similarity=0.218 Sum_probs=174.5
Q ss_pred ceEEEeccCCccccc--eeccccCCCCceEEEEEec---Cc---eEEeecCCeEEEEecCCccceeeeeecCccccceee
Q 038568 49 EINVFDLISDYSHVD--TFSNDLSSSGSVKSITFHI---TK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~--~~~~~~~~~~~v~~l~~~~---~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 120 (357)
.+.+|++ .+.+... +++. .....+..+.|.- ++ ++-+..+|.|.++..........+..+....
T Consensus 47 kl~Lys~-~d~~~~~l~~~q~--~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~k----- 118 (339)
T KOG0280|consen 47 KLHLYSL-EDMKLSPLDTLQC--TDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKK----- 118 (339)
T ss_pred ceEEEee-cccccCccceeee--ecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhh-----
Confidence 5778888 5544433 2221 1455677888873 22 7778888999999877554433333332110
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchh--hhhccccccccEEEEEEecCC-
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNG- 195 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~- 195 (357)
-......++.|++ ..++++-.+|.+.+-+...... ++.+ +.|.-+..-..|+...
T Consensus 119 -------------------i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~w-k~He~E~Wta~f~~~~p 178 (339)
T KOG0280|consen 119 -------------------ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTW-KVHEFEAWTAKFSDKEP 178 (339)
T ss_pred -------------------hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccc-cccceeeeeeecccCCC
Confidence 0011345677777 6788888899998666544433 3356 7899899888887654
Q ss_pred -eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeee
Q 038568 196 -VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 196 -~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 273 (357)
.+.+|+.|+.+..||+|.+ ........+.|...|.++.-+| .+.++++|+.|-.|++||.++..++....
T Consensus 179 nlvytGgDD~~l~~~D~R~p--------~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIP--------KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA 250 (339)
T ss_pred ceEEecCCCceEEEEEecCC--------cceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC
Confidence 6999999999999999821 1222333567889999998887 67899999999999999999655432222
Q ss_pred eccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCCcc--eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEc
Q 038568 274 ALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKENC--YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSG 347 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~ 347 (357)
. -.+.|..+.++|. .|+++-.+| .+|-+.+.+.. ...+...+.|.+-+..-.|..... +|+|+
T Consensus 251 ~---v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~-------~lATC 319 (339)
T KOG0280|consen 251 K---VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDS-------FLATC 319 (339)
T ss_pred c---cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccc-------eeeee
Confidence 1 3377899988886 355555555 67777765421 124556677888788888855444 78987
Q ss_pred C-CCCeEE-ec
Q 038568 348 S-LNGEIK-VW 356 (357)
Q Consensus 348 ~-~dg~v~-~w 356 (357)
+ .|+.++ +|
T Consensus 320 sFYDk~~~~~W 330 (339)
T KOG0280|consen 320 SFYDKKIRQLW 330 (339)
T ss_pred eccccceeeee
Confidence 7 677755 66
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.3e-13 Score=104.30 Aligned_cols=196 Identities=16% Similarity=0.266 Sum_probs=135.8
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~ 217 (357)
+..+..++|++ ..++++..|-.|++||-+. ++...++......|+|++|-|.+ .|++|+. +.|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 34678899999 7788999999999999766 55555555667889999999987 4777766 56889987521110
Q ss_pred ccc----ccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 218 KER----KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 218 ~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
... ......+....+| .+|++|.|++||..+++++- |..|.|||.+++...... . -..+.+.-+.|+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~--~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-P--KGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-c--cCCCceeeEEEcCCCC
Confidence 000 0001112223344 78999999999999998875 678999999988765333 1 23344556666665
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
+|.++.-|+..++|+.... +......-+ .+.|...+|+|+++ .+|++.+..-.
T Consensus 252 ~lfaAt~davfrlw~e~q~--wt~erw~lg-sgrvqtacWspcGs------fLLf~~sgsp~ 304 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQS--WTKERWILG-SGRVQTACWSPCGS------FLLFACSGSPR 304 (445)
T ss_pred EEEEecccceeeeehhccc--ceecceecc-CCceeeeeecCCCC------EEEEEEcCCce
Confidence 9999999999999976543 222333333 34899999999998 45666655443
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=1.1e-11 Score=102.89 Aligned_cols=264 Identities=13% Similarity=0.148 Sum_probs=157.5
Q ss_pred cceEEEee-CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 39 NSLLYAAS-LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 39 ~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
++++++.. .+ .|.+.|. .+.+.+..+.. ....-..+.|+||+ +++++.||.|.++|+.+.+....+..
T Consensus 5 ~~l~~V~~~~~~~v~viD~-~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---- 76 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDG-ATNKVVARIPT---GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---- 76 (369)
T ss_dssp GGEEEEEEGGGTEEEEEET-TT-SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----
T ss_pred ccEEEEEecCCCEEEEEEC-CCCeEEEEEcC---CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----
Confidence 56665555 44 9999999 89899999985 44443457789976 77888999999999999987766653
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcchhhhhcccc------cccc
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYKCLESVNKA------HEDA 185 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~------~~~~ 185 (357)
......+++++ ++++++. .++.+.++|.++.+.+..+... ....
T Consensus 77 ---------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~R 129 (369)
T PF02239_consen 77 ---------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESR 129 (369)
T ss_dssp ---------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---
T ss_pred ---------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCC
Confidence 23456788888 6666554 6899999999999988877321 2346
Q ss_pred EEEEEEecCCe-EEEE-eCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE-ecCCeEEEEe
Q 038568 186 VNAVVVSDNGV-VYTG-SADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG-GCDRWIVVWE 262 (357)
Q Consensus 186 v~~~~~~~~~~-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd 262 (357)
+.++..+|... ++.. -..+.|.+.|... . ..................|+|++++++++ ..++.|-++|
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d------~---~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSD------P---KNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTT------S---SCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEecc------c---cccceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 77887777773 4444 4458888888761 1 11222222334556788999999987665 4577899999
Q ss_pred cccCCceeeeee-ccCCccceEEE-----------eecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEE
Q 038568 263 RERDHRMVFAEA-LWGHTGALLCL-----------INVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~v~~~-----------~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
..+.+....+.. ...|..+...+ .-.+...++.-....+.+||..+. +.+..+.....+ ..+..
T Consensus 201 ~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 201 TKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp TTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SEEEEEE-SSSS---EE-
T ss_pred eccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eEEEEEECCCCc-ceeec
Confidence 988765443322 11233333222 222223322222335667877764 667777776666 78888
Q ss_pred eeCCCCCCCCeEEEEEc----CCCCeEEecC
Q 038568 331 ISSSSSASNGIVSIGSG----SLNGEIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~----~~dg~v~~wd 357 (357)
+|+++ ++... ...++|.++|
T Consensus 277 hP~s~-------~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 277 HPDSR-------YVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp -TT-S-------EEEEE-TT-SSHT-EEEEE
T ss_pred CCCCc-------cEEeeccCCCCCceEEEEE
Confidence 99998 77766 4456777765
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.54 E-value=1.3e-11 Score=102.54 Aligned_cols=292 Identities=14% Similarity=0.079 Sum_probs=164.0
Q ss_pred ccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--
Q 038568 10 EAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-- 84 (357)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-- 84 (357)
+..+.+.+..+.. ....-..+.|+ |+++++++.| .|.++|+ .+.+.+++++ .......+++++|+
T Consensus 22 D~~t~~~~~~i~~-----~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~-~~~~~v~~i~----~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 22 DGATNKVVARIPT-----GGAPHAGLKFSPDGRYLYVANRDGTVSVIDL-ATGKVVATIK----VGGNPRGIAVSPDGKY 91 (369)
T ss_dssp ETTT-SEEEEEE------STTEEEEEE-TT-SSEEEEEETTSEEEEEET-TSSSEEEEEE-----SSEEEEEEE--TTTE
T ss_pred ECCCCeEEEEEcC-----CCCceeEEEecCCCCEEEEEcCCCeEEEEEC-CcccEEEEEe----cCCCcceEEEcCCCCE
Confidence 3445677777774 33333346677 8999999999 9999999 9999999998 55667899999987
Q ss_pred -eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--C-eEEEEec
Q 038568 85 -IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--G-LMYSVSW 160 (357)
Q Consensus 85 -l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~ 160 (357)
+++...++.+.++|.++.+..+.+....... ......+..+..++ . ++++.-.
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-----------------------~~~~~Rv~aIv~s~~~~~fVv~lkd 148 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-----------------------DGPESRVAAIVASPGRPEFVVNLKD 148 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-T-----------------------TTS---EEEEEE-SSSSEEEEEETT
T ss_pred EEEEecCCCceeEeccccccceeecccccccc-----------------------cccCCCceeEEecCCCCEEEEEEcc
Confidence 4455578999999999887766654321000 01345677777777 4 4444444
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEe----eccc
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL----VKHR 234 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~~ 234 (357)
.+.|.+-|....+.+..-............|+|++ + +++...++.|.++|... .+....+ ..|.
T Consensus 149 ~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~----------~k~v~~i~~g~~p~~ 218 (369)
T PF02239_consen 149 TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKT----------GKLVALIDTGKKPHP 218 (369)
T ss_dssp TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTT----------TEEEEEEE-SSSBEE
T ss_pred CCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeecc----------ceEEEEeeccccccc
Confidence 58888888776544332213445667788999998 4 45556778999999872 1222211 1222
Q ss_pred cceeEE-------EEe--cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEe----cCCC
Q 038568 235 STVNAL-------ALN--GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASG----SADR 299 (357)
Q Consensus 235 ~~v~~~-------~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~----~~dg 299 (357)
.+...+ .|. ..+...++.-....+.+||..+.+....+ ...... .-+..+|+ ++.+. ...+
T Consensus 219 ~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I---~~~G~g-lFi~thP~s~~vwvd~~~~~~~~ 294 (369)
T PF02239_consen 219 GPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI---PTQGGG-LFIKTHPDSRYVWVDTFLNPDAD 294 (369)
T ss_dssp TTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE---E-SSSS---EE--TT-SEEEEE-TT-SSHT
T ss_pred cccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE---ECCCCc-ceeecCCCCccEEeeccCCCCCc
Confidence 222221 121 12233323333345667888877744333 333334 44444554 77776 4568
Q ss_pred eEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCCCCCCCCeEEEEEcC-CCCeEEecC
Q 038568 300 TVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSSSSASNGIVSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~l~s~~-~dg~v~~wd 357 (357)
.|.++|.++. +.+..+.. ....+..+.|+++++ ...+|.- .+|.|.+||
T Consensus 295 ~v~viD~~tl---~~~~~i~~~~~~~~~h~ef~~dG~------~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 295 TVQVIDKKTL---KVVKTITPGPGKRVVHMEFNPDGK------EVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp -EEEEECCGT---EEEE-HHHHHT--EEEEEE-TTSS------EEEEEEE--TTEEEEEE
T ss_pred eEEEEECcCc---ceeEEEeccCCCcEeccEECCCCC------EEEEEEecCCCEEEEEE
Confidence 9999999986 44444432 223588999999997 2334443 344798886
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1e-12 Score=108.16 Aligned_cols=234 Identities=15% Similarity=0.171 Sum_probs=157.3
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+...-+.|..+||+ +++|..--.|++||+..-...-.- .....+..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------------------hlDae~V~ 98 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------------------HLDAEVVD 98 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------------------ccccccee
Confidence 78888999999998 888999999999999864322111 11122222
Q ss_pred E-EEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccc
Q 038568 148 L-VVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 148 ~-~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
+ ..+. ..++--..|.+|-+...- |.. ..+ .-...-..++++.-. -|+.++....|+-+++. .
T Consensus 99 feiLsDD~SK~v~L~~DR~IefHak~-G~h-y~~--RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE----------q 164 (703)
T KOG2321|consen 99 FEILSDDYSKSVFLQNDRTIEFHAKY-GRH-YRT--RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE----------Q 164 (703)
T ss_pred EEEeccchhhheEeecCceeeehhhc-Cee-eee--ecCcCCccccccCCCccEEEeecCcceEEEEcc----------c
Confidence 2 2222 334444456666554321 111 111 122334566666544 47777777788888987 5
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeee---ccCCcc-----ceEEEeecCc--eEE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEA---LWGHTG-----ALLCLINVGD--LLA 293 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~-----~v~~~~~~~~--~l~ 293 (357)
+..+..+....+.++++..++...+|++|+.+|.|..||.++......+.. ...|.+ .|+++.|..+ .++
T Consensus 165 GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 165 GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence 667777777778999999999888999999999999999997665433322 222333 3899999886 899
Q ss_pred EecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 294 SGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 294 ~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|..+|.+.|||+++.++. +..-++..-+|..+.|.+.+. +..++|.. ...++|||
T Consensus 245 VGts~G~v~iyDLRa~~pl--~~kdh~~e~pi~~l~~~~~~~-----q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPL--LVKDHGYELPIKKLDWQDTDQ-----QNKVVSMD-KRILKIWD 300 (703)
T ss_pred eeccCCcEEEEEcccCCce--eecccCCccceeeecccccCC-----CceEEecc-hHHhhhcc
Confidence 9999999999999987422 333344556899999988732 12566663 56789997
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=2.5e-12 Score=110.49 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=136.0
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.+||. +. ...+.+.. +...+.+.+|+|++ |+..+. +..|.+||+.+++.. .+.
T Consensus 185 ~l~i~D~-~g-~~~~~lt~---~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~-------------- 244 (433)
T PRK04922 185 ALQVADS-DG-YNPQTILR---SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVA-------------- 244 (433)
T ss_pred EEEEECC-CC-CCceEeec---CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-Eec--------------
Confidence 6899998 54 34444554 77889999999997 666553 346999999876532 221
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeE-EEEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
...+...+..|+| +.+ ++.+.+| .|.+||+.+++.. .+ ..+.......+|+|++. |
T Consensus 245 ----------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~l-t~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 245 ----------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RL-TNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred ----------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-EC-ccCCCCccceEECCCCCEE
Confidence 1223344678888 444 4555555 5999999887643 33 34444556789999994 5
Q ss_pred EEEe-CCCe--EEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCCceee
Q 038568 198 YTGS-ADGR--IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~~~~-~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~ 271 (357)
+..+ .+|. |.++|+. . .. ...+..+.......+|+|+|++|+..+.++ .|.+||+.+++.. .
T Consensus 307 ~f~sd~~g~~~iy~~dl~------~----g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~ 374 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAAS------G----GS-AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T 374 (433)
T ss_pred EEEECCCCCceEEEEECC------C----CC-eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-E
Confidence 5554 4455 5555554 1 11 111112223345689999999988765433 6999999876532 2
Q ss_pred eeeccCCccceEEEeecCc--eEEEecC---CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSA---DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
+. .+ .......|+++ +|+..+. .+.|.++++... ....+..+.+.+...+|+|
T Consensus 375 Lt--~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 375 LT--PG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC--CC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence 21 11 12223455544 5554443 346777887543 2334444556677778876
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=5.2e-12 Score=108.19 Aligned_cols=229 Identities=12% Similarity=0.048 Sum_probs=134.5
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +. ...+.+.. +...+.+.+|+||+ |+..+. ...|.+||+.+++... +.
T Consensus 177 ~L~~~D~-dG-~~~~~l~~---~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~-------------- 236 (427)
T PRK02889 177 QLQISDA-DG-QNAQSALS---SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VA-------------- 236 (427)
T ss_pred EEEEECC-CC-CCceEecc---CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-ee--------------
Confidence 6777776 43 44444544 77889999999997 665553 2459999998775432 22
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCeEEEEEc--CcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRSFKIWNA--SNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
.....+....|+| +.|+ +.+.+|...+|.+ ..+. ...+ ..+........|+|||. |
T Consensus 237 ----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~l-t~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 237 ----------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRL-TQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred ----------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEEC-CCCCCCCcCeEEcCCCCEE
Confidence 1223455788999 4554 5677887666654 3333 3444 33444556788999994 5
Q ss_pred EEEe-CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCCceeeee
Q 038568 198 YTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDHRMVFAE 273 (357)
Q Consensus 198 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~ 273 (357)
+..+ .++...+|.+... ....+.+ .. ........+|+|+|++|+..+.++ .|.+||+.+++.....
T Consensus 299 ~f~s~~~g~~~Iy~~~~~------~g~~~~l-t~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt- 368 (427)
T PRK02889 299 YFTSDRGGAPQIYRMPAS------GGAAQRV-TF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT- 368 (427)
T ss_pred EEEecCCCCcEEEEEECC------CCceEEE-ec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-
Confidence 5444 4566777766411 1111111 11 222344678999999998776654 6999999877532211
Q ss_pred eccCCccceEEEeecCc--eEEEecC-CC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 274 ALWGHTGALLCLINVGD--LLASGSA-DR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 274 ~~~~~~~~v~~~~~~~~--~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
... ......|+++ .|+..+. .| .+.+.++. + .....+..+.+.+...+|+|-
T Consensus 369 --~~~--~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 369 --DTT--RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --CCC--CccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCccCCC
Confidence 111 1233455554 5554443 33 35555553 3 233444456667777888874
No 234
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=9.3e-14 Score=117.61 Aligned_cols=297 Identities=15% Similarity=0.172 Sum_probs=198.8
Q ss_pred ccccccceecccccCCCCCCCccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC--
Q 038568 8 SSEAFKHHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-- 83 (357)
Q Consensus 8 ~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-- 83 (357)
++..++.-..-.++ -.+++.++..+ |+-+|.++.--+.+-|+.+.+.+.+-+... ..-.|-...|+|.
T Consensus 9 pyns~tf~kslsl~------v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~--tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 9 PYNSPTFGKSLSLK------VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHI--TPWQVADVQWSPHPA 80 (1081)
T ss_pred CCCCCccCceeEEE------ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeecc--CcchhcceecccCCC
Confidence 34555665666666 56778888888 888999987767777875556666655520 2335677888864
Q ss_pred --c-eEEeecCCeEEEEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeE
Q 038568 84 --K-IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLM 155 (357)
Q Consensus 84 --~-l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l 155 (357)
. +++.+. ..-.+|++..... +..+ +.+|...|+++.|++ ..+
T Consensus 81 ~~~wiVsts~-qkaiiwnlA~ss~~aIef~-----------------------------lhghsraitd~n~~~q~pdVl 130 (1081)
T KOG0309|consen 81 KPYWIVSTSN-QKAIIWNLAKSSSNAIEFV-----------------------------LHGHSRAITDINFNPQHPDVL 130 (1081)
T ss_pred CceeEEecCc-chhhhhhhhcCCccceEEE-----------------------------EecCccceeccccCCCCCcce
Confidence 2 555444 4566898864432 2222 238999999999999 899
Q ss_pred EEEecCCeEEEEEcCcch-hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecc
Q 038568 156 YSVSWDRSFKIWNASNYK-CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH 233 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 233 (357)
++++.|-.+..||+++.. ++..+ ..-...-..++|+... .+++.+..+.|.+||.+ ....++..+++|
T Consensus 131 atcsvdt~vh~wd~rSp~~p~ys~-~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r---------~gs~pl~s~K~~ 200 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHRPFYST-SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR---------KGSTPLCSLKGH 200 (1081)
T ss_pred eeccccccceeeeccCCCcceeee-ecccccCceeeecccCcchhhhccCCceEEEecc---------CCCcceEEeccc
Confidence 999999999999998754 44444 4445566778888644 57777888999999998 245677888889
Q ss_pred ccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee--cCc--eEEEe---------cCCC
Q 038568 234 RSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN--VGD--LLASG---------SADR 299 (357)
Q Consensus 234 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~--~l~~~---------~~dg 299 (357)
...|+.++|+. ....+.+++.|++|+.||.......... ......++..-.+ -++ ++.-. --++
T Consensus 201 vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~--~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n 278 (1081)
T KOG0309|consen 201 VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR--TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCEN 278 (1081)
T ss_pred ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce--eccccCcceeccccccCceeEeccccCCeeeeeccccc
Confidence 99999999986 3346889999999999998754321111 1112223322222 122 11111 1122
Q ss_pred eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC---CCCeEEEEEcCCCCeEEec
Q 038568 300 TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA---SNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~---~~~~~~l~s~~~dg~v~~w 356 (357)
....|+..++ .++++.+.||.+.|....|-..+... +.....|+|-+.|..+|+|
T Consensus 279 ~d~e~n~~~~--~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 279 SDLEWNVFDL--NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred hhhhhccccC--CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 2334444443 47799999999999888886543311 2224689999999999999
No 235
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.51 E-value=9.4e-12 Score=102.96 Aligned_cols=248 Identities=15% Similarity=0.239 Sum_probs=161.5
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
++....||.+++|+...++..+.+.........-....+. +.+.....+... .......+-....++-|...|.|
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~~s~~k~~~--~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSADYSPMKWLS--LEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEeccchHHHHh--HHHHhhccCCceEEEeecCCccE
Confidence 8888999999999999888766665443221111111000 000000000000 00000001111578889999999
Q ss_pred EEEEcCcchhhhhcc-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEE
Q 038568 165 KIWNASNYKCLESVN-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALAL 242 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 242 (357)
.+|++..++....+. ..|.+.|+++.++.+- .|.+++.|+.+..|+.. .....+........+.+++.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~----------~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK----------EKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc----------cceeeeeeccCCCccceEEE
Confidence 999999998887775 6789999999988765 59999999999999987 56677777888888999999
Q ss_pred ecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec-------Cc-eEEEecCCCeEEEeeCCCC-ccee
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV-------GD-LLASGSADRTVRIWQRGKE-NCYR 313 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~l~~~~~dg~i~vw~~~~~-~~~~ 313 (357)
+||+..+++++ ++|++||+++.+ .+..+.+|.++|.+++|- ++ .|.+...+..+.+|-+... +...
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~ke---vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks 227 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETKE---VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKS 227 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCce---EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccch
Confidence 99999999886 679999999887 677889999999998874 33 4555566777888887652 1122
Q ss_pred eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 314 CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 314 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
....+....-+|+.=.+.... ..+...+++.-.+|.+..
T Consensus 228 ~~~sl~~~dipv~~ds~~~ed---~~~~l~lAst~~~g~v~~ 266 (541)
T KOG4547|consen 228 LSCSLTVPDIPVTSDSGLLED---GTIPLVLASTLIPGIVHL 266 (541)
T ss_pred hheeeccCCCCeEeccccccc---cccceEEeeeccCceeee
Confidence 223333333333322222211 112245666666666654
No 236
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=3.8e-12 Score=96.07 Aligned_cols=108 Identities=16% Similarity=0.265 Sum_probs=81.3
Q ss_pred ccccEEEEEEec--CeEEE--EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeC---CCeEEEEEcc
Q 038568 141 HWDAVSDLVVKQ--GLMYS--VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA---DGRIRVWERS 212 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---d~~i~i~d~~ 212 (357)
..++|.+++|+| +.+++ |..++.|.+||++ ++.+..+ ....++.+.|+|+| ++++++. .|.|.+||.+
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 445799999999 55443 4467899999996 5666655 35677899999999 4666653 4779999997
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec------CCeEEEEecc
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC------DRWIVVWERE 264 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~vwd~~ 264 (357)
..+.+.... | ..++.++|+|+|++|+++.. |+.++||+..
T Consensus 134 ----------~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 134 ----------KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ----------CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 344444443 3 34789999999999999875 7789999986
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.5e-11 Score=101.83 Aligned_cols=185 Identities=19% Similarity=0.300 Sum_probs=149.9
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEe------c--------------Cc--eEEeecCCeEE
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFH------I--------------TK--IFTAHQDCKIR 95 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~------~--------------~~--l~~~~~d~~i~ 95 (357)
..++|....| .+++|+. ..++....|.......+..++..|. | +. ++-|...|.|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 5789999999 9999999 7777777776544345566666663 2 11 77788889999
Q ss_pred EEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch
Q 038568 96 VWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 96 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 173 (357)
+|++..++....+... .|.+.|.++.++. ..|.+++.|+.+..|+...++
T Consensus 84 ~ys~~~g~it~~~st~----------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTD----------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred EEEecCCeEEEEEecC----------------------------CCCCcceeeecccccCceEecCCceeEEEEecccce
Confidence 9999988876666543 8999999999888 899999999999999999988
Q ss_pred hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC-----CC
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD-----GS 247 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~ 247 (357)
.+..+ ......+.+++++||+ .+++++ +.|++||++ ..+.+..+.+|.++|.++.|-.+ |.
T Consensus 136 ~~~~~-~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~----------~kevv~~ftgh~s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 136 IIRIW-KEQKPLVSSLCISPDGKILLTAS--RQIKVLDIE----------TKEVVITFTGHGSPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred eeeee-ccCCCccceEEEcCCCCEEEecc--ceEEEEEcc----------CceEEEEecCCCcceEEEEEEEeccccccc
Confidence 88888 7788889999999998 466665 689999998 67889999999999999999876 66
Q ss_pred EEEEEe-cCCeEEEEeccc
Q 038568 248 LLFSGG-CDRWIVVWERER 265 (357)
Q Consensus 248 ~l~~~~-~dg~i~vwd~~~ 265 (357)
+++++. .+.-+.+|-.+.
T Consensus 203 ~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEK 221 (541)
T ss_pred eeeeccccccceeEEEEEc
Confidence 666554 455577887664
No 238
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=2.6e-12 Score=99.37 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=157.0
Q ss_pred cccccccEEEEEEec--CeEEEEecCCeEEEEEcC-cchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccc
Q 038568 138 WLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNAS-NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSV 213 (357)
Q Consensus 138 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 213 (357)
+++|.+.+++...-| .-+++.+.|.++++|--+ .++.-..+......+++++.+.++. +|++|-..|++.-+.+.
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s- 98 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS- 98 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh-
Confidence 358888888888888 889999999999999543 4554444434567889999999988 48899999999988876
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc----------------------------
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER---------------------------- 265 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------------------------- 265 (357)
..-......+....|...+..+.|+-...++++.+.|..+.---.+.
T Consensus 99 -----edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 99 -----EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred -----hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 22234445566667888888888887767777777665443211110
Q ss_pred ----------CCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 266 ----------DHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 266 ----------~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.....++..+.+|.+.+.+++|++. .|.+|..|..+.+||+--.+ .....+.+|.+.|..+...+-
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhhhhhhh
Confidence 0112245567889999999999987 99999999999999997653 446778899999999998888
Q ss_pred CCCCCCCeEEEEEcCCCCeEEecC
Q 038568 334 SSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 334 ~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+ .+.+++.||.|.+||
T Consensus 252 t~-------~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 252 TR-------QLISCGEDGGIVVWN 268 (404)
T ss_pred he-------eeeeccCCCeEEEEe
Confidence 77 999999999999997
No 239
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.7e-11 Score=103.45 Aligned_cols=226 Identities=9% Similarity=-0.007 Sum_probs=137.4
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +. ...+.+.. +...+.+.+|+||+ |+..+. +..|.+||+.+++.. .+.
T Consensus 183 ~l~~~d~-dg-~~~~~lt~---~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-------------- 242 (435)
T PRK05137 183 RLAIMDQ-DG-ANVRYLTD---GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-------------- 242 (435)
T ss_pred EEEEECC-CC-CCcEEEec---CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee--------------
Confidence 7888887 54 44455555 88899999999997 665543 468999999877542 221
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeE-EEEecCCe--EEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLM-YSVSWDRS--FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
.+.+.+....|+| +.| ++.+.++. |.+||+.+++.. .+ ..+........|+||+. +
T Consensus 243 ----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~L-t~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 243 ----------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RL-TDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred ----------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-Ec-cCCCCccCceeEcCCCCEE
Confidence 3344566788998 444 45666655 777788776543 34 34455567789999994 5
Q ss_pred EEEe-CCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceee
Q 038568 198 YTGS-ADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~ 271 (357)
+..+ .+| .|.++|+. . .. ...+..+...+....|+|+|+.|+....+ ..|.+||+..+... .
T Consensus 305 ~f~s~~~g~~~Iy~~d~~------g----~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~ 372 (435)
T PRK05137 305 VFESDRSGSPQLYVMNAD------G----SN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-I 372 (435)
T ss_pred EEEECCCCCCeEEEEECC------C----CC-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-e
Confidence 5544 333 57777765 1 11 12222234456678899999998876643 36888888654421 2
Q ss_pred eeeccCCccceEEEeecCc--eEEEecC-C-----CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 272 AEALWGHTGALLCLINVGD--LLASGSA-D-----RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~--~l~~~~~-d-----g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+. .+ ..+....|+|+ .|+..+. . ..+.++|+..+.. ..+. ..+.+...+|+|-
T Consensus 373 lt--~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~----~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 373 LT--SG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE----REVP-TPGDASDPAWSPL 433 (435)
T ss_pred cc--CC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce----EEcc-CCCCccCcccCCC
Confidence 21 11 22444556654 5544332 2 3578888866422 2222 2334566677763
No 240
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=9.7e-12 Score=93.88 Aligned_cols=107 Identities=10% Similarity=0.203 Sum_probs=78.0
Q ss_pred cccceeEEEEecCCCEEEEE--ecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecC---CCeEEEee
Q 038568 233 HRSTVNALALNGDGSLLFSG--GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSA---DRTVRIWQ 305 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~---dg~i~vw~ 305 (357)
..++|.+++|+|+|+.+++. ..++.|.+||++ .+ .+..+ +...+..+.|+|+ +|++++. .|.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~---~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GK---KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-cc---EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 34579999999999986554 457899999997 33 23333 2345667778776 7777764 46799999
Q ss_pred CCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCC------CCeEEecC
Q 038568 306 RGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL------NGEIKVWD 357 (357)
Q Consensus 306 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~------dg~v~~wd 357 (357)
+++. +.+.... | ..++.++|+|+++ +|+++.. |..++||+
T Consensus 132 ~~~~---~~i~~~~-~-~~~t~~~WsPdGr-------~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKK---KKISTFE-H-SDATDVEWSPDGR-------YLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCC---EEeeccc-c-CcEEEEEEcCCCC-------EEEEEEeccceeccccEEEEE
Confidence 9975 5555443 3 3478999999999 8888764 77788885
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.45 E-value=5.9e-12 Score=110.69 Aligned_cols=179 Identities=20% Similarity=0.220 Sum_probs=141.0
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceE--EE---EEecCc--eEEeecCCeEEEEecCCccceeeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVK--SI---TFHITK--IFTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~--~l---~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
...++.+..+ .+.+||. ........+. +....+ ++ .++++. +++|+.-+.|.+|++........
T Consensus 99 ~k~i~l~~~~ns~~i~d~-~~~~~~~~i~----~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~--- 170 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDS-KNSSVLSKIQ----SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIR--- 170 (967)
T ss_pred cceEEEEEcCceEEEEec-ccCceehhcC----CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcce---
Confidence 5677777777 9999999 6666666655 333322 22 233443 89999999999999873322211
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNA 188 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 188 (357)
+.+|.+.|.++.++. .++++.|.|.++++|++.+.+.....--+|...+..
T Consensus 171 ---------------------------l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 171 ---------------------------LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred ---------------------------ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 129999999999977 999999999999999999988777333699999999
Q ss_pred EEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc-cceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 189 VVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR-STVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 189 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+++.|+ ++++++.|-+.++|+.. ...+..+.+|. ..+..++..++...+++++.|+.+++|++.
T Consensus 224 ~~~~~n-~i~t~gedctcrvW~~~-----------~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 224 CCFLPN-RIITVGEDCTCRVWGVN-----------GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEeccc-eeEEeccceEEEEEecc-----------cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 999999 99999999999999765 33344666675 468999999999999999999999999985
No 242
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.44 E-value=3.5e-10 Score=95.96 Aligned_cols=177 Identities=16% Similarity=0.131 Sum_probs=108.3
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccc---c------EEEEEEecCCeEEEEeCCCeEEEEEccccccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHED---A------VNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~------v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..++.+..+|.+..+|.++++.+......... . +.+-..-.++.+++++.+|.++.+|.++ +
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t------G--- 261 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS------G--- 261 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC------C---
Confidence 56778888899999999998876543111100 0 1110111255788888999999999872 2
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRI 303 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~v 303 (357)
+...... .. ...... ..+..+++++.||.++.+|..+++.+.....+.. .........++.+++++.+|.|++
T Consensus 262 -~~~W~~~-~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 262 -RVLWKRD-AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKY--RQLTAPAVVGGYLVVGDFEGYLHW 334 (377)
T ss_pred -cEEEeec-cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccC--CccccCEEECCEEEEEeCCCEEEE
Confidence 2222221 11 111222 2456788888999999999998875432222211 112222345678999999999999
Q ss_pred eeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 304 WQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 304 w~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+|..++ +.+..+..+...+..--...++ .|+.++.||.|..+
T Consensus 335 ~d~~tG---~~~~~~~~~~~~~~~sp~~~~~--------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDG---SFVARLKTDGSGIASPPVVVGD--------GLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCC---CEEEEEEcCCCccccCCEEECC--------EEEEEeCCceEEEe
Confidence 999988 4555555555444333223333 57778889998765
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.43 E-value=2.5e-11 Score=92.05 Aligned_cols=241 Identities=16% Similarity=0.081 Sum_probs=153.7
Q ss_pred ccceeEEEEe-----cc-eEEEeeCC-ceEEEeccCCccccceeccccCCCC---ceEEEEEecCc--eEEeecCCeEEE
Q 038568 29 HMIISCLAVH-----NS-LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG---SVKSITFHITK--IFTAHQDCKIRV 96 (357)
Q Consensus 29 ~~~i~~~~~s-----~~-~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~--l~~~~~d~~i~v 96 (357)
...+..+.|. |. .++-+-.. .|.++.. +..+....+++.....- ...++.|++.+ ++++-.+|.+.+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~-~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRN-DEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEee-ccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 3456667776 44 55566666 8889887 54444444443221221 23466777755 888888888885
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcC-cc
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNAS-NY 172 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~-~~ 172 (357)
-+...... +.. +.|+.|.-+.+-..|+. +.+++|+.|+.+..||++ .+
T Consensus 148 v~~t~~~l-e~v---------------------------q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~ 199 (339)
T KOG0280|consen 148 VYETEMVL-EKV---------------------------QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK 199 (339)
T ss_pred Eecceeee-eec---------------------------ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc
Confidence 44332211 111 34558889999998877 899999999999999999 34
Q ss_pred hhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC--CCE
Q 038568 173 KCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD--GSL 248 (357)
Q Consensus 173 ~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 248 (357)
+.+..-...|...|.+|.-+|.. ++++|+.|..|++||.|. ..+++..-. ..+.|+.+..+|. ++.
T Consensus 200 ~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn---------m~kPl~~~~-v~GGVWRi~~~p~~~~~l 269 (339)
T KOG0280|consen 200 TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN---------MGKPLFKAK-VGGGVWRIKHHPEIFHRL 269 (339)
T ss_pred ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc---------ccCccccCc-cccceEEEEecchhhhHH
Confidence 44444336788999999988764 699999999999999982 233333222 3488999999993 334
Q ss_pred EEEEecCCeEEEEecccCCce--eeeeeccCCccceEEEeecCc--eEEEec-CCCeEE-EeeCCCC
Q 038568 249 LFSGGCDRWIVVWERERDHRM--VFAEALWGHTGALLCLINVGD--LLASGS-ADRTVR-IWQRGKE 309 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~l~~~~-~dg~i~-vw~~~~~ 309 (357)
|+++-.+| .+|-+.+.+..- ........|.+-+..-.|+.. .|++++ .|+.++ +|-.-++
T Consensus 270 L~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 270 LAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred HHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 55555555 777777654321 123344456555555555333 577765 366544 6654443
No 244
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1e-10 Score=100.23 Aligned_cols=329 Identities=15% Similarity=0.204 Sum_probs=206.5
Q ss_pred cccccceecccccCCCCCCCccceeEEEEe--------c------ceEEEeeCC-ceEEEeccCCccccceeccccCCCC
Q 038568 9 SEAFKHHCIASLKIPSPDPHHMIISCLAVH--------N------SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG 73 (357)
Q Consensus 9 ~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s--------~------~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~ 73 (357)
-+..+.|.+++++. |...|+.+.|. + -+||++... .|.+||. ..+..+..+.. |..
T Consensus 40 VDs~s~q~iqsie~-----h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~-~~~s~~~~l~~---~~~ 110 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIEL-----HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF-VLASVINWLSH---SND 110 (1062)
T ss_pred Eehhhhhhhhcccc-----CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-hhhhhhhhhcC---CCc
Confidence 35567888888887 99999999996 1 146666666 9999999 88888888887 999
Q ss_pred ceEEEEEecCc------eEEeecCCeEEEEecCCccceeeeeecCcc---------ccceeeeecCCCeEEEe-------
Q 038568 74 SVKSITFHITK------IFTAHQDCKIRVWKITASRQHQLVSTLPTV---------KDRLIRSVLPNNYVTVR------- 131 (357)
Q Consensus 74 ~v~~l~~~~~~------l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~------- 131 (357)
++..+.|-+.+ |++-....++.+|+..+|+..-........ ..+-.......+.+...
T Consensus 111 ~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~se 190 (1062)
T KOG1912|consen 111 SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSE 190 (1062)
T ss_pred chhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCC
Confidence 99999998643 777777889999999888754322211110 00000000111111000
Q ss_pred ----cccccccccccc-------------------------cEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 132 ----RHKKRLWLEHWD-------------------------AVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 132 ----~~~~~~~~~~~~-------------------------~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
++.-.+-..|++ ....++|+| +.++-......+.++|++-..++..+ .
T Consensus 191 p~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv-p 269 (1062)
T KOG1912|consen 191 PDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV-P 269 (1062)
T ss_pred CCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE-E
Confidence 000011111111 122456777 44444445667999999988888877 5
Q ss_pred cccccEEEEEEecCC---eEEEEeCCCeEEEEEcccccccccc----------c--------------------------
Q 038568 181 AHEDAVNAVVVSDNG---VVYTGSADGRIRVWERSVVDHNKER----------K-------------------------- 221 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~----------~-------------------------- 221 (357)
...+.+.-+.+-|+. .|++.-.||.+.+|-.+......+. .
T Consensus 270 ier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~ 349 (1062)
T KOG1912|consen 270 IERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSAL 349 (1062)
T ss_pred eccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhh
Confidence 555666677788876 3888999999999976532111000 0
Q ss_pred --------------c-------------------------------ceeeeeEeeccccceeEEEEec-----------C
Q 038568 222 --------------S-------------------------------RHMLVTTLVKHRSTVNALALNG-----------D 245 (357)
Q Consensus 222 --------------~-------------------------------~~~~~~~~~~~~~~v~~~~~~~-----------~ 245 (357)
. ....+....+|.....+....| .
T Consensus 350 avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~ 429 (1062)
T KOG1912|consen 350 AVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG 429 (1062)
T ss_pred hhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCC
Confidence 0 0000000011222222222221 1
Q ss_pred C-------CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEec----------CCCeEEEeeCC
Q 038568 246 G-------SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGS----------ADRTVRIWQRG 307 (357)
Q Consensus 246 ~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~----------~dg~i~vw~~~ 307 (357)
+ .+++.|...|+|.++|+.++. ....+..|...|.++.|-+. .|++.+ .-+.+.+-|++
T Consensus 430 ~n~~~~~~pLvAvGT~sGTV~vvdvst~~---v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLr 506 (1062)
T KOG1912|consen 430 GNTPAGTVPLVAVGTNSGTVDVVDVSTNA---VAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLR 506 (1062)
T ss_pred CCccceeeeeEEeecCCceEEEEEecchh---hhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcc
Confidence 1 257889999999999999886 45567789999999999887 444433 23567788999
Q ss_pred CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 308 KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 308 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+|-........+....+|+.+..+..++ ||+..=.|.-+.+||
T Consensus 507 tGlsk~fR~l~~~despI~~irvS~~~~-------yLai~Fr~~plEiwd 549 (1062)
T KOG1912|consen 507 TGLSKRFRGLQKPDESPIRAIRVSSSGR-------YLAILFRREPLEIWD 549 (1062)
T ss_pred cccccccccCCCCCcCcceeeeecccCc-------eEEEEecccchHHHh
Confidence 8732221112334567899999999998 999988888888886
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=8.2e-09 Score=86.06 Aligned_cols=268 Identities=13% Similarity=0.199 Sum_probs=154.6
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec----CCeEEEEecCCc-cceeeeeecCccccceeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ----DCKIRVWKITAS-RQHQLVSTLPTVKDRLIRS 121 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~----d~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~ 121 (357)
.|.+|++......+..... .........++++|++ |+++.. ++.|..|++... ..+..+...+
T Consensus 14 gI~~~~~d~~~g~l~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~--------- 83 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP--------- 83 (345)
T ss_dssp EEEEEEEETTTTEEEEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---------
T ss_pred cEEEEEEcCCCCCceEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---------
Confidence 7888877222222222221 1144556778898876 666655 578999998865 3333333221
Q ss_pred ecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCc-chhhhh---cc---------cccccc
Q 038568 122 VLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASN-YKCLES---VN---------KAHEDA 185 (357)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~---------~~~~~~ 185 (357)
........+++++ ++|+++. .+|.|.++++.. +..... +. ......
T Consensus 84 ------------------~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h 145 (345)
T PF10282_consen 84 ------------------SGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPH 145 (345)
T ss_dssp ------------------ESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTC
T ss_pred ------------------cCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccc
Confidence 1223445678877 6677666 489999999976 322211 10 112355
Q ss_pred EEEEEEecCCe-EE-EEeCCCeEEEEEccccccccccccceeeeeEe-eccccceeEEEEecCCCEEEEEec-CCeEEEE
Q 038568 186 VNAVVVSDNGV-VY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGGC-DRWIVVW 261 (357)
Q Consensus 186 v~~~~~~~~~~-l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vw 261 (357)
..++.++|++. ++ +.-....|.+|++. ...........+ .........++|+|+++++++..+ ++.|.++
T Consensus 146 ~H~v~~~pdg~~v~v~dlG~D~v~~~~~~------~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDLGADRVYVYDID------DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEE-------TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred ceeEEECCCCCEEEEEecCCCEEEEEEEe------CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEE
Confidence 77899999984 43 34446689999987 221112122222 234456789999999998866654 7889999
Q ss_pred eccc-CCceeeeeeccC----C--ccceEEEeec--CceE-EEecCCCeEEEeeCC-CCcceeeeeeecCCcCceEEEEE
Q 038568 262 ERER-DHRMVFAEALWG----H--TGALLCLINV--GDLL-ASGSADRTVRIWQRG-KENCYRCMAFLEGHEKPVKSLVA 330 (357)
Q Consensus 262 d~~~-~~~~~~~~~~~~----~--~~~v~~~~~~--~~~l-~~~~~dg~i~vw~~~-~~~~~~~~~~~~~h~~~v~~~~~ 330 (357)
++.. ...+........ . ......+.++ +++| ++....+.|.+|++. .....+.+..........+.+.+
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 9982 222222222111 1 1134455555 4444 445567899999994 32335555555544555899999
Q ss_pred eeCCCCCCCCeEEEEEc-CCCCeEEecC
Q 038568 331 ISSSSSASNGIVSIGSG-SLNGEIKVWD 357 (357)
Q Consensus 331 ~~~~~~~~~~~~~l~s~-~~dg~v~~wd 357 (357)
+|+++ +|+++ ..++.|.+|+
T Consensus 300 s~~g~-------~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 300 SPDGR-------YLYVANQDSNTVSVFD 320 (345)
T ss_dssp -TTSS-------EEEEEETTTTEEEEEE
T ss_pred eCCCC-------EEEEEecCCCeEEEEE
Confidence 99998 55544 5777888763
No 246
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=8.8e-13 Score=121.82 Aligned_cols=184 Identities=18% Similarity=0.259 Sum_probs=147.3
Q ss_pred ccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 139 LEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 139 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
..+-..|.++.-+| .+.++|+.||.+++|....++.+..+.......++.+.|+.+| .+..+..||.+.+|...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--- 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--- 2281 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC---
Confidence 34556778888888 8899999999999999998888887765666899999999988 68899999999999975
Q ss_pred cccccccceeeeeEeeccccceeEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
.++....+.|........|-. ..+++++ .++.+.+||..-......+. ..|.+.++++++.|+
T Consensus 2282 --------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2282 --------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred --------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcce
Confidence 456667778888888888875 4566654 47889999987554444444 679999999999988
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|++||.+|.|++||++.. +..+.++. +. ... ++++|+..|.++||+
T Consensus 2350 llisggr~G~v~l~D~rqr---ql~h~~~~---------~~-~~~-------~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2350 LLISGGRKGEVCLFDIRQR---QLRHTFQA---------LD-TRE-------YFVTGSSEGNIKIWR 2396 (2439)
T ss_pred EEEecCCcCcEEEeehHHH---HHHHHhhh---------hh-hhh-------eeeccCcccceEEEE
Confidence 9999999999999999975 33443332 44 333 899999999999995
No 247
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=6.9e-11 Score=101.23 Aligned_cols=208 Identities=9% Similarity=-0.007 Sum_probs=127.2
Q ss_pred CccceeEEEEe--cceEEEee---CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE-eecCC--eEEE
Q 038568 28 HHMIISCLAVH--NSLLYAAS---LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT-AHQDC--KIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~---~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~-~~~d~--~i~v 96 (357)
+...+.+.+|+ |+.|+..+ .+ .|.+|++ .+++... +.. ..+.+...+|+||+ |+. .+.+| .|.+
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl-~~G~~~~-l~~---~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-ANGAVRQ-VAS---FPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC-CCCCeEE-ccC---CCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 56688999999 88887654 35 8999999 7765332 222 33345578999997 543 34444 5888
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCe--EEEEEcCc
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRS--FKIWNASN 171 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~--i~iwd~~~ 171 (357)
||+.+++..... .+...+....|+| +.|+..+. ++. |.++|+.+
T Consensus 272 ~d~~tg~~~~lt-------------------------------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 272 MDLASGQIRQVT-------------------------------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EECCCCCEEEcc-------------------------------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 998876532211 2234567788999 56665554 344 44456665
Q ss_pred chhhhhccccccccEEEEEEecCC-eEEEEeC-C--CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA-D--GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS 247 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 247 (357)
++. ..+ ...........|+|+| +++..+. + ..|.+||+.. + . ...+.. ........|+|||+
T Consensus 321 g~~-~~l-t~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~------g----~-~~~Lt~-~~~~~~p~~SpDG~ 386 (429)
T PRK03629 321 GAP-QRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT------G----G-VQVLTD-TFLDETPSIAPNGT 386 (429)
T ss_pred CCe-EEe-ecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC------C----C-eEEeCC-CCCCCCceECCCCC
Confidence 543 233 2233445678899999 4555443 3 3578888762 1 1 111211 11234678999999
Q ss_pred EEEEEecCCe---EEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 248 LLFSGGCDRW---IVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 248 ~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
+|+.++.++. +.++++.... ...+.+|.+.+...+|+|
T Consensus 387 ~i~~~s~~~~~~~l~~~~~~G~~----~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 387 MVIYSSSQGMGSVLNLVSTDGRF----KARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCC----eEECccCCCCcCCcccCC
Confidence 9999887764 6677775332 233445677777777765
No 248
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=120.93 Aligned_cols=185 Identities=19% Similarity=0.297 Sum_probs=141.4
Q ss_pred CceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 73 GSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 73 ~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
..|.++.-+|.. .+||+.||.+++|....++.+.+.++. + ...|+.+.|
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~----------------------------g-~s~vtr~~f 2259 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA----------------------------G-NSRVTRSRF 2259 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc----------------------------C-cchhhhhhh
Confidence 345556666654 899999999999999998887777663 3 378888888
Q ss_pred ec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEe---CCCeEEEEEcccccccccccccee
Q 038568 151 KQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGS---ADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 151 ~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
+. +.+..+..||.+.+|.+. .++.... ..|........|-.. .+++++ .++.+.+||... . ....
T Consensus 2260 ~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~-qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~------~-~~~s 2329 (2439)
T KOG1064|consen 2260 NHQGNKFGIVDGDGDLSLWQAS-PKPYTSW-QCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLL------P-PMNS 2329 (2439)
T ss_pred cccCCceeeeccCCceeecccC-Ccceecc-ccCCccccceeeeeh-hhhccccCCCCCcccchhccc------C-cccc
Confidence 88 888899999999999986 5555555 678888888888763 344443 478899999651 1 1122
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEee
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ 305 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~ 305 (357)
.+. ..|.+.++++++-|....|++|+.+|.|++||++..+. +..+. . +. ..+++++|+..|.++||+
T Consensus 2330 ~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql---~h~~~-----~--~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2330 LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL---RHTFQ-----A--LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH---HHHhh-----h--hh-hhheeeccCcccceEEEE
Confidence 233 67999999999999999999999999999999986553 22222 1 22 345999999999999999
Q ss_pred CCCC
Q 038568 306 RGKE 309 (357)
Q Consensus 306 ~~~~ 309 (357)
+...
T Consensus 2397 ~s~~ 2400 (2439)
T KOG1064|consen 2397 LSEF 2400 (2439)
T ss_pred cccc
Confidence 9875
No 249
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=9.7e-12 Score=95.14 Aligned_cols=273 Identities=13% Similarity=0.207 Sum_probs=162.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc-----ccceecccc---------CCCCceEEEEEecCc----eE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS-----HVDTFSNDL---------SSSGSVKSITFHITK----IF 86 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~-----~~~~~~~~~---------~~~~~v~~l~~~~~~----l~ 86 (357)
..+.|+++.|. |.||++|..+ .|.+|.- +... ....|++.. .-...|..+.|..+. ++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer-~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFER-EKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeec-ccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45679999999 9999999988 9999987 3322 222344410 123568899998653 78
Q ss_pred EeecCCeEEEEecCCccceeeeee------cCcc-cc------ceeeeecCCCeEEEeccccccc-ccccccEEEEEEec
Q 038568 87 TAHQDCKIRVWKITASRQHQLVST------LPTV-KD------RLIRSVLPNNYVTVRRHKKRLW-LEHWDAVSDLVVKQ 152 (357)
Q Consensus 87 ~~~~d~~i~vwd~~~~~~~~~~~~------~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~ 152 (357)
..+.|.+|++|.+...... .+.. +... .+ .+....-......+...+.+++ ..|.-.|.++.|+.
T Consensus 104 lstNdktiKlWKiyeknlk-~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLK-VVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EecCCceeeeeeeecccch-hhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 8889999999998754221 1110 0000 00 0011111122233333344444 68999999999999
Q ss_pred -CeEEEEecCCeEEEEEcCcchh---hhhcc----ccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccccccc
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKC---LESVN----KAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~---~~~~~----~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
...+..+.|=.|.+|++.-... +..+. ......|++..|+|.. .+.-.+..|.|++-|+|..........
T Consensus 183 D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 183 DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 4455555677899998764221 11110 1123457888999976 577788899999999983221111000
Q ss_pred ------ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCC------------ccce--
Q 038568 223 ------RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH------------TGAL-- 282 (357)
Q Consensus 223 ------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~v-- 282 (357)
.+.....+.+-...|..+.|+++|+++++-+. -++++||.+..+.+ +.+..-| ...|
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p--ikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP--IKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC--ceeechHHHHHHHHHhhhhccceee
Confidence 00111112233456888999999999988654 46999999876543 2222212 1122
Q ss_pred -EEEeecCc--eEEEecCCCeEEEee
Q 038568 283 -LCLINVGD--LLASGSADRTVRIWQ 305 (357)
Q Consensus 283 -~~~~~~~~--~l~~~~~dg~i~vw~ 305 (357)
..+.|+|+ .+++|+..+..-++-
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred eEEEEecCCcccccccccccceeeec
Confidence 34566665 777777666666664
No 250
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=1.3e-10 Score=99.67 Aligned_cols=178 Identities=11% Similarity=0.030 Sum_probs=107.1
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEE-EEeCCCeEEEEEcc
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVY-TGSADGRIRVWERS 212 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~i~d~~ 212 (357)
.+...+.+.+|+| +.|+..+.+ ..|.+||+.+++... + ........+..|+||| .|+ +.+.++...+|.+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-V-ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-e-ecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 4556788999999 667666543 459999998876532 2 2234456688999999 454 56778887777664
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEec--ccCCceeeeeeccCCccceEEEeecC
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWER--ERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
. .......+..+........|+|||+.|+..+. +|...+|.+ .++.. ..+ ...+....-..+++++
T Consensus 271 ~---------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l-t~~g~~~~~~~~SpDG 339 (427)
T PRK02889 271 A---------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRV-TFTGSYNTSPRISPDG 339 (427)
T ss_pred C---------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEE-ecCCCCcCceEECCCC
Confidence 1 11112333344445567889999998876654 455666654 33332 111 1222211112334445
Q ss_pred ceEEEecCCC---eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 290 DLLASGSADR---TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 290 ~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++|+..+.++ .|.+||+.+++.. .+.. ........|+|+++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~----~lt~-~~~~~~p~~spdg~ 383 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVT----ALTD-TTRDESPSFAPNGR 383 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeE----EccC-CCCccCceECCCCC
Confidence 5776655543 6999999886422 1221 12346789999998
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=2.2e-12 Score=106.18 Aligned_cols=284 Identities=14% Similarity=0.176 Sum_probs=181.9
Q ss_pred cCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccc------cceeccccCCCCceEEEEEecCceEEeecC
Q 038568 21 KIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSH------VDTFSNDLSSSGSVKSITFHITKIFTAHQD 91 (357)
Q Consensus 21 ~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~------~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d 91 (357)
..+.| |...|.+++-- .+-+++++.| +|++|.+...+.. .-+++. |+.+|.++.|..+.-..++.|
T Consensus 729 ~nf~G--H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a---Hkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 729 CNFTG--HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA---HKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred ecccC--cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh---ccCcccceeeeeccceeeecc
Confidence 34456 99999998654 7889999999 9999999333322 335555 999999999998874555668
Q ss_pred CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeE-EEEecCCeEEEEEc
Q 038568 92 CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLM-YSVSWDRSFKIWNA 169 (357)
Q Consensus 92 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l-~~~~~dg~i~iwd~ 169 (357)
|-|.+||.--++....+...+. .+..+.|.++.-.. ..+ +-++...+|+++|.
T Consensus 804 ~giHlWDPFigr~Laq~~dapk-------------------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~Da 858 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPK-------------------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDA 858 (1034)
T ss_pred CcceeecccccchhHhhhcCcc-------------------------cCCCceeEecccCcchheeeeccchhhheeeec
Confidence 9999999877765443332221 02233455554323 344 44478899999999
Q ss_pred Ccchhhhhcc----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec
Q 038568 170 SNYKCLESVN----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG 244 (357)
Q Consensus 170 ~~~~~~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 244 (357)
+.++....+. ......+.++++.+.| +++++-.+|.|.+.|.+ .+..+..++........++- |
T Consensus 859 Rsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR----------~G~vINswrpmecdllqlaa-p 927 (1034)
T KOG4190|consen 859 RSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR----------NGKVINSWRPMECDLLQLAA-P 927 (1034)
T ss_pred ccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC----------CCceeccCCcccchhhhhcC-c
Confidence 9877655552 2344668899999988 69999999999999998 34444444444444444443 4
Q ss_pred CCCEEEEEecCCeEEE-EecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCC-cceeeeeee--cC
Q 038568 245 DGSLLFSGGCDRWIVV-WERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE-NCYRCMAFL--EG 320 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~--~~ 320 (357)
..+.|+....|.++.+ |-...+.... .......+..-+.--+-.|++....+.+.+|.-... .....+..+ ..
T Consensus 928 sdq~L~~saldHslaVnWhaldgimh~---q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~ 1004 (1034)
T KOG4190|consen 928 SDQALAQSALDHSLAVNWHALDGIMHL---QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDE 1004 (1034)
T ss_pred hhHHHHhhcccceeEeeehhcCCeeee---ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccc
Confidence 5567777778888888 8766554221 111122222222233446677777777888743211 000111111 22
Q ss_pred CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 321 h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+..++++.-|-.. -+..|...|.|.+
T Consensus 1005 f~G~lTala~LPLN~-------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1005 FPGTLTALAPLPLNC-------AFLAGNEHGAIAL 1032 (1034)
T ss_pred cCCccceeeeccccc-------hhhccCCCCceee
Confidence 345678888888776 6777888888875
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=3.3e-10 Score=97.68 Aligned_cols=170 Identities=14% Similarity=0.096 Sum_probs=108.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---CeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD---CKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +... .+.+.. +...+...+|+|++ |+.+..+ ..|.+||+.+++... +.
T Consensus 171 ~l~~~d~-~g~~-~~~l~~---~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~-------------- 230 (417)
T TIGR02800 171 ELQVADY-DGAN-PQTITR---SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VA-------------- 230 (417)
T ss_pred eEEEEcC-CCCC-CEEeec---CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ee--------------
Confidence 7888887 5433 444544 67788999999997 6555433 479999998765322 11
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eE
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 197 (357)
.+...+.+..|+| +.|+ +.+.++ .|.+||+.+++... + ..+........|+|++ +|
T Consensus 231 ----------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~s~dg~~l 292 (417)
T TIGR02800 231 ----------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-L-TNGPGIDTEPSWSPDGKSI 292 (417)
T ss_pred ----------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-C-CCCCCCCCCEEECCCCCEE
Confidence 2334455678888 4454 445444 58889988765432 3 2333444567899998 45
Q ss_pred EEEe-CCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCC
Q 038568 198 YTGS-ADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDH 267 (357)
Q Consensus 198 ~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~ 267 (357)
+..+ .++ .|.++|+. . .. ...+..+........|+|++++++.++.++ .|.+||+.++.
T Consensus 293 ~~~s~~~g~~~iy~~d~~------~----~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDAD------G----GE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred EEEECCCCCceEEEEECC------C----CC-EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 5444 334 46666665 1 11 122333445667889999999999888776 78999988754
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4e-10 Score=93.00 Aligned_cols=273 Identities=10% Similarity=0.131 Sum_probs=158.5
Q ss_pred ccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEE-----eecC-----CeE
Q 038568 29 HMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFT-----AHQD-----CKI 94 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~-----~~~d-----~~i 94 (357)
..+++..+++ |+++|.+..+.++|++. .....+.+.. .. .+.++.|+|-+ |.+ ...+ ..+
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~~~~v~i~~~-~~~~~~lt~~----~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~ 107 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSDNQVVKVFEI-ATLKVVLCVE----LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNV 107 (566)
T ss_pred CCcceeEEEcCCCcEEEEEcCCeEEEEEc-cCCcEEEEec----cc-eeeeeeecccccccccccccccccCCCCCCCce
Confidence 3446667777 77777766669999998 6665444443 23 89999999965 222 1122 346
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcch
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK 173 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 173 (357)
++|+++++.....+.. ..... ++..|+. ..+++=-..+.+.+|++...+
T Consensus 108 ~v~~vet~~~~s~~q~-----------------------------k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~ 157 (566)
T KOG2315|consen 108 LVYNVETGVQRSQIQK-----------------------------KMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFK 157 (566)
T ss_pred eeeeeccceehhheeh-----------------------------hhhcC-cccccccchhhhhhhhcceEEEEecCCcc
Confidence 7999887432222211 11111 4556666 444444445667777776633
Q ss_pred hhhhccccccccEEEEEEecCC---eEEE-----EeCCCeEEEEEccccccc----------------------------
Q 038568 174 CLESVNKAHEDAVNAVVVSDNG---VVYT-----GSADGRIRVWERSVVDHN---------------------------- 217 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~---~l~~-----~~~d~~i~i~d~~~~~~~---------------------------- 217 (357)
.+.. .-|...++.+.++|.. .+++ .+.-+.|++|........
T Consensus 158 ~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvL 235 (566)
T KOG2315|consen 158 TIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVL 235 (566)
T ss_pred ceee--eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEE
Confidence 3322 2345566666666653 1221 233445666655411100
Q ss_pred ------ccc-----cc-------ceeeeeEeeccccceeEEEEecCCCEEEE--EecCCeEEEEecccCCceeeeeeccC
Q 038568 218 ------KER-----KS-------RHMLVTTLVKHRSTVNALALNGDGSLLFS--GGCDRWIVVWERERDHRMVFAEALWG 277 (357)
Q Consensus 218 ------~~~-----~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~ 277 (357)
+++ +. .+.....-....++|.++.|+|+++.+++ |-.-..+.|||++.. ++..+
T Consensus 236 astdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~df-- 309 (566)
T KOG2315|consen 236 ASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFDF-- 309 (566)
T ss_pred EEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEeC--
Confidence 000 00 00011111123689999999999986654 445778999999844 22222
Q ss_pred CccceEEEeecCc--eEEEecC---CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCC---
Q 038568 278 HTGALLCLINVGD--LLASGSA---DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSL--- 349 (357)
Q Consensus 278 ~~~~v~~~~~~~~--~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~--- 349 (357)
..++-.++-|+|. +|+.+|- -|.+-+||+.+. +++..+.... -+-+.|+|||+ +|+|+..
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~~--tt~~eW~PdGe-------~flTATTaPR 377 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAAN--TTVFEWSPDGE-------YFLTATTAPR 377 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch---hhccccccCC--ceEEEEcCCCc-------EEEEEecccc
Confidence 3455566666654 6666554 489999999985 6666666543 35689999998 8877763
Q ss_pred ---CCeEEecC
Q 038568 350 ---NGEIKVWD 357 (357)
Q Consensus 350 ---dg~v~~wd 357 (357)
|+.++||+
T Consensus 378 lrvdNg~Kiwh 388 (566)
T KOG2315|consen 378 LRVDNGIKIWH 388 (566)
T ss_pred EEecCCeEEEE
Confidence 67788884
No 254
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.38 E-value=7.2e-10 Score=94.04 Aligned_cols=262 Identities=12% Similarity=0.083 Sum_probs=154.6
Q ss_pred EEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 36 AVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 36 ~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
...++.+++++.+ .|..+|. .+++.+-.+.. ............+.++.++.++.+..+|..+++..-.....
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~-~tG~~~W~~~~---~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--- 134 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDA-ETGKRLWRVDL---DERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS--- 134 (377)
T ss_pred EEECCEEEEECCCCeEEEEEc-cCCcEeeeecC---CCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC---
Confidence 3347888888888 9999999 88888776654 22212233344445888889999999999888754433211
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEE-EEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccE-----EE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS-DLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAV-----NA 188 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----~~ 188 (357)
..+. ......+.++.++.+|.|..||.++++.+..+. ...... .+
T Consensus 135 ----------------------------~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~~~~~~~s 185 (377)
T TIGR03300 135 ----------------------------SEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPALTLRGSAS 185 (377)
T ss_pred ----------------------------ceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCceeecCCCC
Confidence 1111 111223667778889999999999998877662 221111 11
Q ss_pred EEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEee-ccc--cceeEEEEec--CCCEEEEEecCCeEEEEec
Q 038568 189 VVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-KHR--STVNALALNG--DGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 189 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~ 263 (357)
... .++.++.+..++.+..+|.++++. ..+...... +.. .....+.-+| .+..+++++.+|.++.||.
T Consensus 186 p~~-~~~~v~~~~~~g~v~ald~~tG~~------~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 186 PVI-ADGGVLVGFAGGKLVALDLQTGQP------LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CEE-ECCEEEEECCCCEEEEEEccCCCE------eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 111 245778888899999999873221 111000000 000 0000010011 2457888888999999999
Q ss_pred ccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecC-CcCceEEEEEeeCCCCCCCCeE
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEG-HEKPVKSLVAISSSSSASNGIV 342 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~ 342 (357)
++++...... . .........++.++.++.||.+..+|..+++ .+-.... ......+... .+.
T Consensus 259 ~tG~~~W~~~-~----~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~------- 321 (377)
T TIGR03300 259 RSGRVLWKRD-A----SSYQGPAVDDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGG------- 321 (377)
T ss_pred CCCcEEEeec-c----CCccCceEeCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECC-------
Confidence 9887543222 1 1122334556788888899999999998874 2222211 1111122222 233
Q ss_pred EEEEcCCCCeEEecC
Q 038568 343 SIGSGSLNGEIKVWD 357 (357)
Q Consensus 343 ~l~s~~~dg~v~~wd 357 (357)
.|++++.||.|.++|
T Consensus 322 ~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 322 YLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEEEeCCCEEEEEE
Confidence 778888899988875
No 255
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.37 E-value=3.8e-11 Score=93.11 Aligned_cols=255 Identities=12% Similarity=0.170 Sum_probs=160.5
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
...-|.++.|...+ |++|..+|.|.++.-..... ......++......... .-..-...|.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL---------------kSleieEKin 88 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL---------------KSLEIEEKIN 88 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchh---------------hhhhhhhhhh
Confidence 45678899998776 99999999999997543321 11111111111000000 0012345678
Q ss_pred EEEEec----CeEEEEecCCeEEEEEcCcchh-----------------------------------hhhccccccccEE
Q 038568 147 DLVVKQ----GLMYSVSWDRSFKIWNASNYKC-----------------------------------LESVNKAHEDAVN 187 (357)
Q Consensus 147 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~~-----------------------------------~~~~~~~~~~~v~ 187 (357)
.+.|.+ ..++..+.|.+|++|.+..... .+.+..+|.-.|+
T Consensus 89 kIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 89 KIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHIN 168 (433)
T ss_pred hceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEee
Confidence 888877 6777888899999998753211 1112356778899
Q ss_pred EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecc-----ccceeEEEEec-CCCEEEEEecCCeEEEE
Q 038568 188 AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKH-----RSTVNALALNG-DGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~vw 261 (357)
++.++.|+..+....|=.|.+|++...+ ..... ..++.+ ..-|++..|+| ..+.++-.+..|+|++-
T Consensus 169 SIS~NsD~Et~lSADdLRINLWnlei~d------~sFnI-VDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 169 SISVNSDKETFLSADDLRINLWNLEIID------QSFNI-VDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeeecCccceEeeccceeeeeccccccC------CceeE-EEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 9999999876666788899999987322 12222 222222 34588999999 45678888889999999
Q ss_pred ecccCCcee----eeee---------ccCCccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeeeecCCcC---
Q 038568 262 ERERDHRMV----FAEA---------LWGHTGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAFLEGHEK--- 323 (357)
Q Consensus 262 d~~~~~~~~----~~~~---------~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~--- 323 (357)
|++...... .... +..--..|..+.|+. +++++-.. -+|++||+.... +++.+.+.|..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~--~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA--KPVETYPVHEYLRS 318 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC--CcceEEeehHhHHH
Confidence 998432110 0100 001122455566654 47776553 579999996542 44555555531
Q ss_pred ---------c---eEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 ---------P---VKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ---------~---v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. -..++|+.++. +++|||....+++++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~-------~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDS-------YVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcc-------eEecccccceEEEec
Confidence 2 24567888887 999999999999875
No 256
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.9e-10 Score=97.94 Aligned_cols=174 Identities=13% Similarity=0.016 Sum_probs=109.9
Q ss_pred cccccEEEEEEec--CeEEEEec---CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCCCe--EEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSW---DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSADGR--IRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~--i~i~d 210 (357)
.+...+.+..|+| +.|+..+. +..|.+||+.+++.. .+ ......+....|+|+| .| ++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l-~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LV-GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Ee-ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 5667899999999 66666653 468999999887653 23 3455567788999999 44 45555555 66667
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-C--CeEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-D--RWIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. . . ....+..+........|+|||+.|+..+. + ..|+++|+..+... .+. .+...+....|
T Consensus 277 ~~------~----~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt---~~~~~~~~~~~ 341 (435)
T PRK05137 277 LR------S----G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS---FGGGRYSTPVW 341 (435)
T ss_pred CC------C----C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee---cCCCcccCeEE
Confidence 65 1 1 12334445555677899999998887664 3 36888888765432 221 12333444556
Q ss_pred cCc--eEEEecCC---CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 VGD--LLASGSAD---RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~~~--~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+|+ .|+....+ ..|.+||+..+. .+. +. ....+....|+||++
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~---lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERI---LT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCc-eEe---cc-CCCCCCCCeECCCCC
Confidence 554 66554432 468888886542 121 21 123467889999998
No 257
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=3.8e-10 Score=96.10 Aligned_cols=275 Identities=12% Similarity=0.105 Sum_probs=182.7
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCcc---------------ccceeccccCCCCceEEEEEecCc--eEE
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYS---------------HVDTFSNDLSSSGSVKSITFHITK--IFT 87 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~---------------~~~~~~~~~~~~~~v~~l~~~~~~--l~~ 87 (357)
......|++|+ ..++|+|+.| .+++..+ .+.. .-+++.+ |.+.|.-+.|+.+. |-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl-~t~t~d~~~~glaa~snLsmNQtLeG---H~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKL-GTDTTDLNKSGLAAASNLSMNQTLEG---HNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEc-cccCCcccccccccccccchhhhhcc---CcceEEEEEeccccccccc
Confidence 56778999999 8999999999 9999988 4421 1245566 99999999999765 889
Q ss_pred eecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEE
Q 038568 88 AHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFK 165 (357)
Q Consensus 88 ~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~ 165 (357)
...+|.|.||-+-.+......... ...+.|.+++|+. ..++....||.|.
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNn----------------------------RnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINN----------------------------RNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhC----------------------------cCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 999999999999887654443321 4456788999988 7788888888887
Q ss_pred EEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeee----eEeeccccceeEE
Q 038568 166 IWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLV----TTLVKHRSTVNAL 240 (357)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~ 240 (357)
+=.+...+.-.. .-.......+.|++|.. ++.+-..|.+.+||.+..-..+ ....+. ..+......+..+
T Consensus 141 VGsvdGNRIwgK--eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~K---l~~~c~Vn~tg~~s~~~~kia~i 215 (1189)
T KOG2041|consen 141 VGSVDGNRIWGK--ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERK---LEKDCEVNGTGIFSNFPTKIAEI 215 (1189)
T ss_pred EEeeccceecch--hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHh---hhhceEEeeeeeecCCCccccce
Confidence 766543322211 11222344788999984 6777788999999975211100 000110 0111111224455
Q ss_pred EEe--------cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCC---------CeE
Q 038568 241 ALN--------GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSAD---------RTV 301 (357)
Q Consensus 241 ~~~--------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~d---------g~i 301 (357)
.|. |+...|+++..+|.+.+..-.+...+..+.+ ...+....|+++ .|+.++.+ +.|
T Consensus 216 ~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v 291 (1189)
T KOG2041|consen 216 EWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKV 291 (1189)
T ss_pred eeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec----ccEeecceecCCCcEEEEccCcccccCccccceE
Confidence 553 4777999999999999877665544433322 245666777766 77777754 356
Q ss_pred EEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 302 RIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 302 ~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
.+|..-. +.+..++.....|++++|-..+- .++-+ .|+.|.+
T Consensus 292 ~Fysp~G----~i~gtlkvpg~~It~lsWEg~gL-------riA~A-vdsfiyf 333 (1189)
T KOG2041|consen 292 HFYSPYG----HIVGTLKVPGSCITGLSWEGTGL-------RIAIA-VDSFIYF 333 (1189)
T ss_pred EEeccch----hheEEEecCCceeeeeEEcCCce-------EEEEE-ecceEEE
Confidence 6665442 55677777888999999987764 55544 4666543
No 258
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.9e-10 Score=97.04 Aligned_cols=174 Identities=14% Similarity=0.047 Sum_probs=106.1
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCCC--eEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSADG--RIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~--~i~i~d 210 (357)
.+...+.+..|+| +.|+..+.+ ..|.+||+.+++.... ........+..|+|+| ++ ++.+.+| .|++||
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l--~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV--ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe--ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 4556788999999 677776643 4699999987764322 2233445578999999 34 4445555 588888
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCe--EEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRW--IVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. . .. ...+..+.......+|+|||+.|+..+. +|. |+++|+.+++.. .+ ...+ ......+|
T Consensus 279 ~~------~----g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~l-t~~g--~~~~~~~~ 343 (433)
T PRK04922 279 LG------S----RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RL-TFQG--NYNARASV 343 (433)
T ss_pred CC------C----CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee-ecCC--CCccCEEE
Confidence 86 1 11 2233344444567899999998887664 444 667777665422 11 1222 22233455
Q ss_pred c--CceEEEecCC---CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 V--GDLLASGSAD---RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~--~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+ +++|+..+.+ ..|.+||+.+++. + .+. +........|+|+++
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~---~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSV-R---TLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCe-E---ECC-CCCCCCCceECCCCC
Confidence 5 4466654433 2699999987632 2 222 222345678999998
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.5e-10 Score=98.41 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=165.0
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
......|++|+.+. +++|+.||.++|-.+.+...-.....+... ..-.-.+.+.+|...|.-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~---------------snLsmNQtLeGH~~sV~vv 77 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAA---------------SNLSMNQTLEGHNASVMVV 77 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccc---------------cccchhhhhccCcceEEEE
Confidence 56678999999654 999999999999998765422111111000 0011124567999999999
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcchhhhhc-cccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYKCLESV-NKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
.|+. ..|-+...+|-|.+|-+-.+.-.... .....+.|.+++|+.+| ++.....||.|.+=.+. ...--+
T Consensus 78 TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd------GNRIwg 151 (1189)
T KOG2041|consen 78 TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD------GNRIWG 151 (1189)
T ss_pred EeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec------cceecc
Confidence 9999 77888889999999999887654443 34567789999999999 69899999999877665 111111
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee--------eeeccCCccceEEEeec--------
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF--------AEALWGHTGALLCLINV-------- 288 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~v~~~~~~-------- 288 (357)
..++ ..-...+.|++|.+.++.+-.+|.+.+||.+..-.... ...+......+..+.|.
T Consensus 152 ---KeLk--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~ 226 (1189)
T KOG2041|consen 152 ---KELK--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVP 226 (1189)
T ss_pred ---hhcc--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCC
Confidence 1111 12234788999999999999999999999864321111 01111111123333332
Q ss_pred Cc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 289 GD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 289 ~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
|+ .|+.+-.+|.+.+..-.+.. .++..-.+ -.|.++.|+++|. +|+.+|.|.
T Consensus 227 pdrP~lavcy~nGr~QiMR~eND~--~Pvv~dtg--m~~vgakWnh~G~-------vLAvcG~~~ 280 (1189)
T KOG2041|consen 227 PDRPRLAVCYANGRMQIMRSENDP--EPVVVDTG--MKIVGAKWNHNGA-------VLAVCGNDS 280 (1189)
T ss_pred CCCCEEEEEEcCceehhhhhcCCC--CCeEEecc--cEeecceecCCCc-------EEEEccCcc
Confidence 23 89999999999998776653 22322222 5688999999998 999988663
No 260
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=3.4e-10 Score=97.07 Aligned_cols=245 Identities=11% Similarity=0.068 Sum_probs=173.6
Q ss_pred CCCCccceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC-----------c---eEEee
Q 038568 25 PDPHHMIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-----------K---IFTAH 89 (357)
Q Consensus 25 g~~h~~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------~---l~~~~ 89 (357)
|-+|...-.++.|+ +.+||-|+...|.+-|. .+.+.++.+.. |...|+.+.|.|- . |+++.
T Consensus 11 G~l~~sN~~A~Dw~~~GLiAygshslV~VVDs-~s~q~iqsie~---h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 11 GPLSRSNRNAADWSPSGLIAYGSHSLVSVVDS-RSLQLIQSIEL---HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred CCCCcccccccccCccceEEEecCceEEEEeh-hhhhhhhcccc---CccceeEEEeccCCCchhccCccccceeEEecc
Confidence 44455567888999 88999998888899999 88899999998 9999999999862 1 67778
Q ss_pred cCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec------CeEEEEecCCe
Q 038568 90 QDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ------GLMYSVSWDRS 163 (357)
Q Consensus 90 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~ 163 (357)
..|.|.+||+........+. .|.+++.+++|-+ ..|++-....+
T Consensus 87 ~~GrIil~d~~~~s~~~~l~------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~ 136 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLS------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSST 136 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhc------------------------------CCCcchhheeeeeccCcchheeEEecCCcE
Confidence 88999999998776544433 6778899999987 56777788889
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc------
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS------ 235 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------ 235 (357)
+.+|+..+|+..... ........|+.+.|-. .+..-+..|.+.+-+.-...+... ..+..+.-..|..
T Consensus 137 lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~---pgk~~qI~sd~Sdl~~ler 212 (1062)
T KOG1912|consen 137 LVLWNTDTGEKFWKY-DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDV---PGKEFQITSDHSDLAHLER 212 (1062)
T ss_pred EEEEEccCCceeecc-ccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCC---CceeEEEecCccchhhhhh
Confidence 999999999999888 5556677789998854 366667778877776542222111 1111211111111
Q ss_pred -------------------ceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEE
Q 038568 236 -------------------TVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLAS 294 (357)
Q Consensus 236 -------------------~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~ 294 (357)
....++|+|.-+.++-......+.++|++-...+..+... ........+-++++ .|++
T Consensus 213 e~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-r~~akfv~vlP~~~rd~Lfc 291 (1062)
T KOG1912|consen 213 ETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFC 291 (1062)
T ss_pred hhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-cCCcceeEeccCCCcceEEE
Confidence 0123667886655555566788999999877655444332 22334455555554 8999
Q ss_pred ecCCCeEEEeeCCC
Q 038568 295 GSADRTVRIWQRGK 308 (357)
Q Consensus 295 ~~~dg~i~vw~~~~ 308 (357)
...||.+.+|--+.
T Consensus 292 lH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 292 LHSNGRLTIRVRKE 305 (1062)
T ss_pred EecCCeEEEEEeec
Confidence 99999999997654
No 261
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.32 E-value=5.5e-11 Score=88.73 Aligned_cols=234 Identities=16% Similarity=0.227 Sum_probs=137.2
Q ss_pred eeEEEEe-cceEEEeeCC-ceEEEeccCCccc------------cceeccccCCCCceEEEEEecCceEEeecCCeEEEE
Q 038568 32 ISCLAVH-NSLLYAASLN-EINVFDLISDYSH------------VDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVW 97 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~~d-~i~iw~~~~~~~~------------~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vw 97 (357)
|+.+.+. ...|+++..+ .+..... -.+.. .+.+.. ....++...+....++++++..||.+.+.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~-~r~~~~~~~~rt~~i~~~~~~a~-~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGK-GRGRCISLWERDDGIDPFKVLAK-NSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhhheeecccchhheeeecc-ceEEEechhhcccCcCceeeeec-cCCCCCcccccccCCceEecCCCceEEEE
Confidence 6666676 6667777666 6655544 22222 222221 00122223333333459999999999999
Q ss_pred ecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEe-----cCCeEEEEEcCc
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVS-----WDRSFKIWNASN 171 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-----~dg~i~iwd~~~ 171 (357)
+.+... +.....+. .|.+.......+. +.+.++. .-+..+.|+++.
T Consensus 117 s~~~~~--~~~~~i~~--------------------------~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p 168 (319)
T KOG4714|consen 117 STDKDL--ALMSRIPS--------------------------IHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDP 168 (319)
T ss_pred echHHH--hhhhhccc--------------------------ccccccccceeecccEEecCCcceEeeccceeeecccc
Confidence 987521 11111110 1222111111122 2222222 123455666654
Q ss_pred chhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-CCCE
Q 038568 172 YKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-DGSL 248 (357)
Q Consensus 172 ~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 248 (357)
.+.+..- ......|.+++-+|.. .+++|+.||.+.+||.+. ...+...+..|+.+++.+.|+| ++..
T Consensus 169 ~~t~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn---------~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 169 IKTLIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARN---------VAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ccccccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEccc---------ccchHHHHHHhhhhhhheeccCCCchh
Confidence 3322222 1223348899988866 588999999999999982 2445666788999999999999 6779
Q ss_pred EEEEecCCeEEEEecccCCc---------------------eeeeeeccCCccceEEEeecCceEEEecCCCeEEEee
Q 038568 249 LFSGGCDRWIVVWERERDHR---------------------MVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQ 305 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~ 305 (357)
|+++++||.+.-||..+.-. +.....+......|..+...+..|++|++-+.|++++
T Consensus 239 Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999999999874210 0000111122334566666677888988888888865
No 262
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=6.6e-08 Score=80.68 Aligned_cols=251 Identities=12% Similarity=0.143 Sum_probs=145.4
Q ss_pred ceeEEEEe--cceEEEeeC----C-ceEEEeccCCc----cccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEE
Q 038568 31 IISCLAVH--NSLLYAASL----N-EINVFDLISDY----SHVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRV 96 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~~----d-~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~v 96 (357)
....++++ +++|.+... + .|..|++ ... +.+..... .......++++|++ |+++ -.+|.+.+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i-~~~~g~L~~~~~~~~---~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRI-DPDTGTLTLLNSVPS---GGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEE-ETTTTEEEEEEEEEE---SSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEE-CCCcceeEEeeeecc---CCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 34557776 777777765 4 8889988 442 22333332 44566689999887 5544 46899999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-cCCeEEEEEcCcch
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-WDRSFKIWNASNYK 173 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~ 173 (357)
+++.....+............ ....-........++.++| +++++.. ....|.+|++....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~----------------g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGS----------------GPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEE----------------ESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred EEccCCcccceeeeecccCCC----------------CCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 999874322222110000000 0000002234567889999 5555543 34579999987654
Q ss_pred h-h---hhccccccccEEEEEEecCC-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeec------cccceeEEE
Q 038568 174 C-L---ESVNKAHEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK------HRSTVNALA 241 (357)
Q Consensus 174 ~-~---~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~ 241 (357)
. + ..+..........+.|+|++ + .++.-.++.|.++++.. .......+..... .......|+
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP------SDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET------TTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc------cCCceeEEEEeeeccccccccCCceeEE
Confidence 1 2 22223556778999999998 3 55666789999999871 1112222222221 112577899
Q ss_pred EecCCCEEEEEe-cCCeEEEEecc-cCCceeeeeeccCCccceEEEeec--CceEEEe-cCCCeEEEeeCC
Q 038568 242 LNGDGSLLFSGG-CDRWIVVWERE-RDHRMVFAEALWGHTGALLCLINV--GDLLASG-SADRTVRIWQRG 307 (357)
Q Consensus 242 ~~~~~~~l~~~~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg~i~vw~~~ 307 (357)
++|||++|+++. .++.|.+|+++ ....+...............+.++ +++|+++ ..++.|.+|++.
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 999999888765 46789999994 323344444443323335666664 4566555 467899999874
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6.4e-10 Score=91.85 Aligned_cols=277 Identities=12% Similarity=0.131 Sum_probs=163.3
Q ss_pred ceeEEEEe--cceEEEee----------CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEE
Q 038568 31 IISCLAVH--NSLLYAAS----------LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRV 96 (357)
Q Consensus 31 ~i~~~~~s--~~~l~t~~----------~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~v 96 (357)
.+.++.|+ |++|.|=- .. .+.+|++ +++.....++. ....=.+..|+.|. |++--..+.+.+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~v-et~~~~s~~q~---k~Q~~W~~qfs~dEsl~arlv~nev~f 150 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNV-ETGVQRSQIQK---KMQNGWVPQFSIDESLAARLVSNEVQF 150 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeee-ccceehhheeh---hhhcCcccccccchhhhhhhhcceEEE
Confidence 57788888 77776621 23 6789999 77555555553 22222688999886 555455677999
Q ss_pred EecCCccceeeeeecCccccceeeeecCCCeEEEecccc-------ccc-----cc---------ccccEEEEEEec---
Q 038568 97 WKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKK-------RLW-----LE---------HWDAVSDLVVKQ--- 152 (357)
Q Consensus 97 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~---------~~~~v~~~~~~~--- 152 (357)
|++.+.+.....-..+...............+.+...+. +++ .. ....-..+.|++
T Consensus 151 ~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 151 YDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred EecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 998764432222112222111111111111111111000 000 00 011223466666
Q ss_pred CeEEEEec--C---------CeEEEEEcCcchhhhhccccccccEEEEEEecCCe---EEEEeCCCeEEEEEcccccccc
Q 038568 153 GLMYSVSW--D---------RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV---VYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 153 ~~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
.+|+.++. | .++++.+++...+.-.+ ...++|.++.|+|+++ ++-|..-..+.+||++
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr------ 302 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR------ 302 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC------
Confidence 34433332 3 36888888744444443 6689999999999993 5667778899999987
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEec---CCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC---DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 295 (357)
..++..+ ..++=+++-|+|.|++++.++- -|.|-|||..+.+ .+..+..-...+...+.+|++|+|+
T Consensus 303 -----~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---~i~~~~a~~tt~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 303 -----GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---LIAKFKAANTTVFEWSPDGEYFLTA 372 (566)
T ss_pred -----CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh---hccccccCCceEEEEcCCCcEEEEE
Confidence 4444444 4577789999999999988876 4789999999865 3444444444444445555577777
Q ss_pred cC------CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 296 SA------DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 296 ~~------dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
.. |+.++||++.. ..+..-.- .+....+.|-|-.
T Consensus 373 TTaPRlrvdNg~KiwhytG----~~l~~~~f-~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHYTG----SLLHEKMF-KSELLQVEWRPFN 412 (566)
T ss_pred eccccEEecCCeEEEEecC----ceeehhhh-hHhHhheeeeecC
Confidence 64 78899999874 22322211 1146677777543
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.7e-11 Score=101.14 Aligned_cols=208 Identities=15% Similarity=0.227 Sum_probs=136.1
Q ss_pred CCCCceEEEEEecC--ceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 70 SSSGSVKSITFHIT--KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 70 ~~~~~v~~l~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+|...|..++--.+ .+++++.|+++++|.++....-.... ...-++..|..+|.+
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-----------------------aCQfTY~aHkk~i~~ 789 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-----------------------ACQFTYQAHKKPIHD 789 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-----------------------eeeeEhhhccCcccc
Confidence 38888888866544 39999999999999987532111000 000233589999999
Q ss_pred EEEecCeEEEEecCCeEEEEEcCcchhhhhccc-cccccEEEEEEecC--C-eE-EEEeCCCeEEEEEcccccccccccc
Q 038568 148 LVVKQGLMYSVSWDRSFKIWNASNYKCLESVNK-AHEDAVNAVVVSDN--G-VV-YTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 148 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~--~-~l-~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
+.|....-..++.||.|.+||.--++.+..... ...+.+..+..-++ . .+ +.++...+|+++|.+ ...-
T Consensus 790 igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaR------sce~ 863 (1034)
T KOG4190|consen 790 IGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDAR------SCEW 863 (1034)
T ss_pred eeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecc------cccc
Confidence 999984434455688999999988887775421 22223333333333 2 34 444778999999988 2211
Q ss_pred ceee-eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee-cCceEEEecCCCe
Q 038568 223 RHML-VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN-VGDLLASGSADRT 300 (357)
Q Consensus 223 ~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~ 300 (357)
..+. +....+....+.+++..+.|+.++++-.+|.|.+.|.+++. .+............++- +...|+....|.+
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~---vINswrpmecdllqlaapsdq~L~~saldHs 940 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK---VINSWRPMECDLLQLAAPSDQALAQSALDHS 940 (1034)
T ss_pred eeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc---eeccCCcccchhhhhcCchhHHHHhhcccce
Confidence 1111 11112334568899999999999999999999999999987 34444444444444443 3447777788888
Q ss_pred EEE-eeCCCC
Q 038568 301 VRI-WQRGKE 309 (357)
Q Consensus 301 i~v-w~~~~~ 309 (357)
+.+ |....+
T Consensus 941 laVnWhaldg 950 (1034)
T KOG4190|consen 941 LAVNWHALDG 950 (1034)
T ss_pred eEeeehhcCC
Confidence 888 876554
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.1e-09 Score=91.78 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=130.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC---CeEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD---CKIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +... .+.+.. +...+....|+|++ |+..+.+ ..|.+|++.+++... +.
T Consensus 180 ~l~~~d~-~g~~-~~~l~~---~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~-------------- 239 (430)
T PRK00178 180 TLQRSDY-DGAR-AVTLLQ---SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-IT-------------- 239 (430)
T ss_pred EEEEECC-CCCC-ceEEec---CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-cc--------------
Confidence 5888888 5544 444544 77889999999997 6555433 368889998765422 21
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eE
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l 197 (357)
...+.+....|+| +.|+ +.+.+| .|.+||+.+++.. .+ ..+........|+|++ .+
T Consensus 240 ----------------~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~l-t~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 240 ----------------NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RV-TNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred ----------------CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ec-ccCCCCcCCeEECCCCCEE
Confidence 1122344678888 5554 555555 5888899876543 33 2344455677899998 44
Q ss_pred EEEe-CCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC-C--eEEEEecccCCceee
Q 038568 198 YTGS-ADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-R--WIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~ 271 (357)
+..+ .++ .|+++|+. .+. ...+ ... ........|+|+|+.|+..+.+ + .|.++|+.+++.. .
T Consensus 302 ~f~s~~~g~~~iy~~d~~------~g~--~~~l-t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~ 369 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVN------GGR--AERV-TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-I 369 (430)
T ss_pred EEEECCCCCceEEEEECC------CCC--EEEe-ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-E
Confidence 4443 344 46666654 111 1111 111 1223457899999988877653 3 5888999876532 2
Q ss_pred eeeccCCccceEEEeecCceEEEec-CC--CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 272 AEALWGHTGALLCLINVGDLLASGS-AD--RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~l~~~~-~d--g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+... ....-..++.+++.++..+ .+ ..|.++++... ....+..+.+.+...+|+|-
T Consensus 370 lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 370 LTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCCCccCCC
Confidence 2211 1111123444445554433 33 34666677543 12233344556777778764
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.29 E-value=1e-08 Score=94.81 Aligned_cols=304 Identities=11% Similarity=0.100 Sum_probs=170.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEE----eccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEe
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVF----DLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw----~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd 98 (357)
..+.|.++.|- ...++.+..+ .|.+. +. .. ..+..... -...|.+++|+||. |+..+.++++.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~-~~-~~~E~VG~---vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDP-DE-DEIEIVGS---VDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCC-CC-ceeEEEEE---EcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 45678888887 5556666655 66666 33 22 23333333 67799999999998 77777788877754
Q ss_pred cCCccceeeeeecCc--cccceeeeecCCCeEEEecc-----------------cccccccccccEEEEEEec--CeEEE
Q 038568 99 ITASRQHQLVSTLPT--VKDRLIRSVLPNNYVTVRRH-----------------KKRLWLEHWDAVSDLVVKQ--GLMYS 157 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~v~~~~~~~--~~l~~ 157 (357)
- +-+.+......+. .........+..+...+.+. +...+. ..+.-..++|-. .++|+
T Consensus 149 ~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 149 R-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred c-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 2 1211111111000 00111111111111111100 011122 444667788888 77777
Q ss_pred Eec---C---CeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeC----CCeEEEEEccccccccccccceeee
Q 038568 158 VSW---D---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSA----DGRIRVWERSVVDHNKERKSRHMLV 227 (357)
Q Consensus 158 ~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~ 227 (357)
.+. . ..++||+-+ |+...+- ....+--.+++|.|.|.++++.. ...|.+|.-+ +-..++..
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-------GLrhgeF~ 297 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-------GLRHGEFT 297 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-------CcEeeeEe
Confidence 664 2 479999954 5544433 34444456789999996555443 3567777643 11122222
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc-CCccceEEEeecCc---eEEEecCCCeEEE
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW-GHTGALLCLINVGD---LLASGSADRTVRI 303 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~l~~~~~dg~i~v 303 (357)
..+......|..+.|++|+..|+.-..|. |.+|-..+.. ....+.+. .....+..+.|++. .|.....+|.+..
T Consensus 298 l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 298 LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEI 375 (928)
T ss_pred cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEE
Confidence 22334567899999999999999987666 9999887543 22222222 22233444778775 5555555555544
Q ss_pred eeC----CCCc-----------------------------ceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 304 WQR----GKEN-----------------------------CYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 304 w~~----~~~~-----------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+++ ..+. ++-....+. -..+|.+++|+++.. .+++-..|
T Consensus 376 ~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-------~~avl~~d 447 (928)
T PF04762_consen 376 YDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-------RFAVLTSD 447 (928)
T ss_pred EEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-------eEEEEECC
Confidence 432 1110 000111121 346899999999987 68888889
Q ss_pred CeEEecC
Q 038568 351 GEIKVWD 357 (357)
Q Consensus 351 g~v~~wd 357 (357)
|.|.+|+
T Consensus 448 ~~l~~~~ 454 (928)
T PF04762_consen 448 GSLSIYE 454 (928)
T ss_pred CCEEEEE
Confidence 9988873
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.9e-09 Score=92.86 Aligned_cols=229 Identities=12% Similarity=0.044 Sum_probs=126.1
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec-CC--eEEEEecCCccceeeeeecCccccceeeeec
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ-DC--KIRVWKITASRQHQLVSTLPTVKDRLIRSVL 123 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~-d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (357)
.|.++|. +.... +.+.. ....+.+..|+||+ |+..+. ++ .|.+||+.+++.. .+...
T Consensus 199 ~l~i~d~-dG~~~-~~l~~---~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~------------ 260 (448)
T PRK04792 199 QLMIADY-DGYNE-QMLLR---SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSF------------ 260 (448)
T ss_pred EEEEEeC-CCCCc-eEeec---CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCC------------
Confidence 5667777 54333 44444 67789999999997 554433 33 5888888776532 22211
Q ss_pred CCCeEEEecccccccccccccEEEEEEec--CeEE-EEecCCe--EEEEEcCcchhhhhccccccccEEEEEEecCCe-E
Q 038568 124 PNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMY-SVSWDRS--FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-V 197 (357)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 197 (357)
........|+| +.|+ +.+.+|. |.++|+.+++.. .+ ..+........|+||+. +
T Consensus 261 ------------------~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~l-t~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 261 ------------------PGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RI-TRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred ------------------CCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-EC-ccCCCCccceEECCCCCEE
Confidence 12233568888 5454 5566665 777888776543 33 23444567789999994 4
Q ss_pred E-EEeCCCe--EEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceee
Q 038568 198 Y-TGSADGR--IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVF 271 (357)
Q Consensus 198 ~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~ 271 (357)
+ +...++. |.++|+. .+ ....+ ... .......+|+|||++|+..+. ++ .|.++|+.++... .
T Consensus 321 ~f~s~~~g~~~Iy~~dl~------~g--~~~~L-t~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~ 388 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLA------SG--KVSRL-TFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-V 388 (448)
T ss_pred EEEECCCCCceEEEEECC------CC--CEEEE-ecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-E
Confidence 4 3433444 5555554 11 11111 112 222345789999998877655 33 4666777766532 2
Q ss_pred eeeccCCccceEEEeecCceEE-EecCCC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 272 AEALWGHTGALLCLINVGDLLA-SGSADR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~~~~~l~-~~~~dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
+.. .....-..++.+++.|+ +...++ .+++++.+. .....+..+.+.+...+|+|-
T Consensus 389 lt~--~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 389 LTS--TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCccCCC
Confidence 111 11111123344444444 444444 366777643 233444455566777888773
No 268
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.26 E-value=3.7e-10 Score=84.41 Aligned_cols=204 Identities=12% Similarity=0.122 Sum_probs=118.6
Q ss_pred ceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccc--ccEEEEEE
Q 038568 74 SVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW--DAVSDLVV 150 (357)
Q Consensus 74 ~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~ 150 (357)
.|+.+.+..+. |+++..++.+.......+........-.... ...++..|. ++-..+..
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~------------------~~~~~a~~sep~p~~~~s~ 99 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGID------------------PFKVLAKNSEIDPNDACTM 99 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcC------------------ceeeeeccCCCCCcccccc
Confidence 36677777666 8888888877776654432221111100000 000111111 22223333
Q ss_pred ecCeEEEEecCCeEEEEEcCcchhhh-hccccccccEEEEEEecCCeEEEEeC------CCeEEEEEccccccccccccc
Q 038568 151 KQGLMYSVSWDRSFKIWNASNYKCLE-SVNKAHEDAVNAVVVSDNGVVYTGSA------DGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 151 ~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..+.++++..||.+.+++.+.-..+. .+...|.+ -.+.++...+.++.... -+..+.|+++ +.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~---------p~ 169 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLD---------PI 169 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeeccc---------cc
Confidence 33789999999999999987522111 11011111 11222222332333322 3345566665 11
Q ss_pred eeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEecCCC
Q 038568 224 HMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGSADR 299 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~~dg 299 (357)
........ ....|.+++-+| +.+.+++|+.||.+-+||.+.... +...+..|+.++..+.|+|+ .|+++++||
T Consensus 170 ~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedG 246 (319)
T KOG4714|consen 170 KTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDG 246 (319)
T ss_pred cccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--hHHHHHHhhhhhhheeccCCCchheeEecCCC
Confidence 11111112 223489999999 556888899999999999997743 45567789999999999876 999999999
Q ss_pred eEEEeeCCC
Q 038568 300 TVRIWQRGK 308 (357)
Q Consensus 300 ~i~vw~~~~ 308 (357)
.+..||..+
T Consensus 247 slw~wdas~ 255 (319)
T KOG4714|consen 247 SLWHWDAST 255 (319)
T ss_pred cEEEEcCCC
Confidence 999999874
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.24 E-value=2.5e-09 Score=92.21 Aligned_cols=182 Identities=13% Similarity=0.028 Sum_probs=110.5
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCC--eEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADG--RIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~--~i~i~d 210 (357)
.+...+.+..|+| +.|+.+..+ ..|++||+.+++.... ..+...+.+++|+|++. |+ +.+.++ .|++||
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV--ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe--ecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 3445677888999 667766543 4799999988754332 23445566789999983 54 444444 578888
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+.. . ....+..+........|+|+++.|+..+. ++ .|+++|+.+++.. .+..+........|
T Consensus 265 ~~~----------~-~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 265 LDG----------K-QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYNASPSW 329 (417)
T ss_pred CCC----------C-CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCccCeEE
Confidence 761 1 12223334444556789999998876654 33 5888888765422 12223334445556
Q ss_pred cCc--eEEEecCCC---eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 288 VGD--LLASGSADR---TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 288 ~~~--~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+++ +|+.++.++ .|.+||+.++. .+. +... .......|+|+++ .|+..+.+
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~-~~~---l~~~-~~~~~p~~spdg~-------~l~~~~~~ 385 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGG-ERV---LTDT-GLDESPSFAPNGR-------MILYATTR 385 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCC-eEE---ccCC-CCCCCceECCCCC-------EEEEEEeC
Confidence 554 777766665 78899988752 122 2211 2234568999987 66555544
No 270
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.24 E-value=5.1e-09 Score=78.83 Aligned_cols=244 Identities=9% Similarity=-0.055 Sum_probs=152.7
Q ss_pred eCC-ceEEEeccCCccccceeccccCCCCceEEEEEecC-------ceEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 46 SLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-------KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 46 ~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-------~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+.. .+-+|+.....+.+..+. ..+.|.|. .|+.|+..|...+|...+.+....+..
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y---------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd------- 112 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY---------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD------- 112 (344)
T ss_pred cceeeeEeccccCCchhhEEee---------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-------
Confidence 344 677787732222222221 24666663 289999999999999987664433322
Q ss_pred eeeeecCCCeEEEecccccccccccccE---EEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAV---SDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN 194 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 194 (357)
.|...| ...+-....+..++.|.++++.++.-+...... ....-.+.++.++++
T Consensus 113 ----------------------~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~-h~~~~~~ns~~~snd 169 (344)
T KOG4532|consen 113 ----------------------VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV-HNQNLTQNSLHYSND 169 (344)
T ss_pred ----------------------ccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee-eccccceeeeEEcCC
Confidence 111111 111222245667788889999888654333322 111133889999999
Q ss_pred Ce-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee-
Q 038568 195 GV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA- 272 (357)
Q Consensus 195 ~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~- 272 (357)
+. +++.+....|-.|.+... ...... .........-.+..|+.....+|++..||++.|||++....+...
T Consensus 170 ~~~~~~Vgds~~Vf~y~id~~------sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 170 PSWGSSVGDSRRVFRYAIDDE------SEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred CceEEEecCCCcceEEEeCCc------cceeee-eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 95 778888889999988721 111111 122333444567889998899999999999999999865533221
Q ss_pred -eeccCCccceEEEeecCc----eEEEecCCCeEEEeeCCCCcceeeeeee----cCC-cCceEEEEEeeCCC
Q 038568 273 -EALWGHTGALLCLINVGD----LLASGSADRTVRIWQRGKENCYRCMAFL----EGH-EKPVKSLVAISSSS 335 (357)
Q Consensus 273 -~~~~~~~~~v~~~~~~~~----~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~~h-~~~v~~~~~~~~~~ 335 (357)
..-..|.+++..+.|++. +|...-.-+.+.+-|+++....+.+... ..| ...|..-.|+.++.
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 223458899999999843 6666666788999999997544443322 122 24477777877765
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=2.2e-08 Score=82.16 Aligned_cols=294 Identities=8% Similarity=0.085 Sum_probs=174.7
Q ss_pred ccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecC-------------
Q 038568 29 HMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQD------------- 91 (357)
Q Consensus 29 ~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d------------- 91 (357)
.-++..+++| |.+|++.....|.+|.- .....+..+. ...|..+.|+|++ |.+-+..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g-~~~~~l~~~~-----~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGG-PSKAKLVRFR-----HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccc-cchhheeeee-----cCCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 4568888999 88888876669999998 6666665664 3578999999987 6654433
Q ss_pred --CeEEEEecCCccceeeeeecCccc--cceeeeecCCC--------eEEEecccccc--c---ccccccEEEEEEec--
Q 038568 92 --CKIRVWKITASRQHQLVSTLPTVK--DRLIRSVLPNN--------YVTVRRHKKRL--W---LEHWDAVSDLVVKQ-- 152 (357)
Q Consensus 92 --~~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--------~~~~~~~~~~~--~---~~~~~~v~~~~~~~-- 152 (357)
..+.+||..++..+..+...+... .......-.+. .+.+....... . .-....|....++|
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 359999999987655554433321 10111111111 11111100000 0 01124577777887
Q ss_pred --CeEEE-----EecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEE-E---e-------CCCeEEEEEccc
Q 038568 153 --GLMYS-----VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYT-G---S-------ADGRIRVWERSV 213 (357)
Q Consensus 153 --~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~-~---~-------~d~~i~i~d~~~ 213 (357)
..|+. ....+.+++|.+..+..+.+. .-....-..+.|.+.| +|++ . . ....+++++++
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~- 263 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT- 263 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec-
Confidence 23332 345678889988766655544 2233333467888877 2211 1 1 13567777775
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEE--ecCCeEEEEecccCCceeeeeeccCCccceEEEeec--C
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG--GCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV--G 289 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 289 (357)
...+.......++|...+|.|.++.+++. -.+-.+.++|++..- ...+. ...-..+.|+ .
T Consensus 264 ----------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl----~~~~P--e~~rNT~~fsp~~ 327 (561)
T COG5354 264 ----------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL----RFYFP--EQKRNTIFFSPHE 327 (561)
T ss_pred ----------ccccceeccccccceeeeecccCCceeEEecccccceeecccccce----EEecC--CcccccccccCcc
Confidence 11122222557899999999988765544 468889999998652 11221 1222334444 4
Q ss_pred ceEEEecCC---CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC------CCCeEEecC
Q 038568 290 DLLASGSAD---RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS------LNGEIKVWD 357 (357)
Q Consensus 290 ~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~------~dg~v~~wd 357 (357)
++++.++-| |.+-+||.... ..++..+.+.+ .+-+.|+|++. ++.+.- .|..|+|||
T Consensus 328 r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n--~s~~~wspd~q-------F~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLN--TSYCDWSPDGQ-------FYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred cEEEEecCCccccceEEeccCCc--eEEEEEeecCC--ceEeeccCCce-------EEEecCCCcccccCcceEEEE
Confidence 577776655 78999998875 34554555443 34567999997 655542 477788886
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=7.6e-07 Score=70.39 Aligned_cols=262 Identities=10% Similarity=0.148 Sum_probs=159.0
Q ss_pred ceEEEeccCCc----cccceeccccCCCCceEEEEEecCc--eEEeec---CCeEEEEecCCc-cceeeeeecCccccce
Q 038568 49 EINVFDLISDY----SHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ---DCKIRVWKITAS-RQHQLVSTLPTVKDRL 118 (357)
Q Consensus 49 ~i~iw~~~~~~----~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~---d~~i~vwd~~~~-~~~~~~~~~~~~~~~~ 118 (357)
-|++|++ ++. ..++... ..+.++-|+|+|+. |.++.. +|.|..|.++.. .....+....
T Consensus 17 gI~v~~l-d~~~g~l~~~~~v~----~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~------ 85 (346)
T COG2706 17 GIYVFNL-DTKTGELSLLQLVA----ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT------ 85 (346)
T ss_pred ceEEEEE-eCcccccchhhhcc----ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc------
Confidence 8999999 531 1222222 77888999999987 777654 477888877653 1222222111
Q ss_pred eeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCc-chhhhhcc-cccccc--------
Q 038568 119 IRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASN-YKCLESVN-KAHEDA-------- 185 (357)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~-~~~~~~~~-~~~~~~-------- 185 (357)
....+-..+++++ ++++++.. .|.|.++-++. |....... ..|...
T Consensus 86 ---------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 86 ---------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred ---------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 1112226777777 67777765 57899998865 33222211 123333
Q ss_pred --EEEEEEecCCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEE
Q 038568 186 --VNAVVVSDNGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVV 260 (357)
Q Consensus 186 --v~~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~v 260 (357)
+....+.|+++ +++.. .-..|.+|++. .+.........+ ........|.|+|++++..+.++ +++|.+
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~------dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v 217 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLD------DGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDV 217 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcc------cCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEE
Confidence 77888999994 44433 34578999987 222222222223 34456789999999998877766 999999
Q ss_pred EecccC-Cceeeeeecc------CCccce--EEEeecCceEEEecC-CCeEEEeeCCCC-cceeeeeeecCCcCceEEEE
Q 038568 261 WERERD-HRMVFAEALW------GHTGAL--LCLINVGDLLASGSA-DRTVRIWQRGKE-NCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 261 wd~~~~-~~~~~~~~~~------~~~~~v--~~~~~~~~~l~~~~~-dg~i~vw~~~~~-~~~~~~~~~~~h~~~v~~~~ 329 (357)
|..+.. ..+..++.+. ...... ..++.++++|.++.. ...|.+|.+... .....+.....+...-+.+.
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~ 297 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFN 297 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccce
Confidence 998864 3222332221 112223 334455557666654 457888888653 23455555555666678999
Q ss_pred EeeCCCCCCCCeEEEEEcCCC-CeEEec
Q 038568 330 AISSSSSASNGIVSIGSGSLN-GEIKVW 356 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s~~~d-g~v~~w 356 (357)
++++++ +|+.+..| ..|.+|
T Consensus 298 i~~~g~-------~Liaa~q~sd~i~vf 318 (346)
T COG2706 298 INPSGR-------FLIAANQKSDNITVF 318 (346)
T ss_pred eCCCCC-------EEEEEccCCCcEEEE
Confidence 999998 77777654 356554
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=3.4e-09 Score=79.77 Aligned_cols=171 Identities=12% Similarity=-0.040 Sum_probs=113.6
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
.+|+.|+..|...+|...+.+....+-..+...|+-+.-.-+. .+..++.|.++++.++.. .. ...
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~------~s-~~~----- 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG------DS-NKF----- 152 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEec------Cc-ccc-----
Confidence 6899999999999999987654443323333333222111122 477888999999998861 11 111
Q ss_pred eccc--cceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeC
Q 038568 231 VKHR--STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQR 306 (357)
Q Consensus 231 ~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~ 306 (357)
..|. -.+.+++++++++++++.+....|..|.+..................-.+.+|+.+ .+|++..||++.|||+
T Consensus 153 ~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 153 AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 1122 23789999999999999999999999999865543333222233333355566655 9999999999999999
Q ss_pred CCCcceee--eeeecCCcCceEEEEEeeCCC
Q 038568 307 GKENCYRC--MAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 307 ~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+....+.. -..-..|.+.++.+.|++-+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 87532211 122345889999999998554
No 274
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.16 E-value=7.1e-08 Score=82.27 Aligned_cols=263 Identities=10% Similarity=0.035 Sum_probs=152.5
Q ss_pred EecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceE-EEEEecCceEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 37 VHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVK-SITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 37 ~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
..+..++.++.+ .+..+|. ++++.+-.... . +.+. +.....+.++.+..++.+.-+|..+++..-........
T Consensus 118 v~~~~v~v~~~~g~l~ald~-~tG~~~W~~~~---~-~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 192 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNA-EDGEVAWQTKV---A-GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS 192 (394)
T ss_pred EECCEEEEEcCCCEEEEEEC-CCCCCcccccC---C-CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc
Confidence 345566777778 9999999 88888877763 2 2222 12233445777888999999999998765444321000
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccc------cEEE
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHED------AVNA 188 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~ 188 (357)
. .......++ .....++.++.+|.+..+|..+++.+......... ....
T Consensus 193 ~---------------------~~~~~~sP~----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 193 L---------------------TLRGESAPA----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred c---------------------cccCCCCCE----EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccc
Confidence 0 000011111 11256777888999999999999877665211110 0111
Q ss_pred EEEe---cCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc
Q 038568 189 VVVS---DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 189 ~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
+..+ .++.++.++.+|.+..+|..+ ++ .+-... ......+.. .+..++.++.+|.+..+|..+
T Consensus 248 ~~~sP~v~~~~vy~~~~~g~l~ald~~t------G~----~~W~~~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 248 VDTTPVVVGGVVYALAYNGNLVALDLRS------GQ----IVWKRE--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred cCCCcEEECCEEEEEEcCCeEEEEECCC------CC----EEEeec--CCCccCcEE--ECCEEEEEcCCCeEEEEECCC
Confidence 1112 256777788899999999872 22 111111 111112222 456788888999999999998
Q ss_pred CCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEE
Q 038568 266 DHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIG 345 (357)
Q Consensus 266 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~ 345 (357)
++.......... .........++.|+.++.||.|.+.|..+++ .+...+.....+.+--...++ .|+
T Consensus 314 G~~~W~~~~~~~--~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~---~~~~~~~~~~~~~s~P~~~~~--------~l~ 380 (394)
T PRK11138 314 GVELWSQSDLLH--RLLTAPVLYNGYLVVGDSEGYLHWINREDGR---FVAQQKVDSSGFLSEPVVADD--------KLL 380 (394)
T ss_pred CcEEEcccccCC--CcccCCEEECCEEEEEeCCCEEEEEECCCCC---EEEEEEcCCCcceeCCEEECC--------EEE
Confidence 875332221111 1122223346788899999999999999984 343333222223221111233 677
Q ss_pred EcCCCCeEEec
Q 038568 346 SGSLNGEIKVW 356 (357)
Q Consensus 346 s~~~dg~v~~w 356 (357)
.++.||.|..+
T Consensus 381 v~t~~G~l~~~ 391 (394)
T PRK11138 381 IQARDGTVYAI 391 (394)
T ss_pred EEeCCceEEEE
Confidence 78899998765
No 275
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=3.2e-08 Score=85.54 Aligned_cols=176 Identities=15% Similarity=0.074 Sum_probs=102.8
Q ss_pred cccccEEEEEEec--CeEEEEecC---CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEE-EEeCCC--eEEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWD---RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVY-TGSADG--RIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~--~i~i~d 210 (357)
.+...+....|+| +.|+..+.+ ..|.+||+.+++..... ..........|+|+| +|+ +...++ .|.++|
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 4456788999999 667665543 36899999877543322 223345578999999 454 444455 577788
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. .+ . ...+..+........|+|||+.|+..+. +| .|+++|+.+++... + ...+.......++.
T Consensus 274 ~~------~~----~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l-t~~~~~~~~~~~Sp 340 (430)
T PRK00178 274 LA------SR----Q-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V-TFVGNYNARPRLSA 340 (430)
T ss_pred CC------CC----C-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e-ecCCCCccceEECC
Confidence 76 11 1 1223334445567889999998776654 33 57778887665321 1 12222222233344
Q ss_pred cCceEEEecC-CC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 VGDLLASGSA-DR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+++.|+..+. ++ .|.+||+.+++. +.+.. ........|+|+++
T Consensus 341 dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spdg~ 386 (430)
T PRK00178 341 DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPNGT 386 (430)
T ss_pred CCCEEEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCCCC
Confidence 4556555443 33 588899987642 22221 11223458999988
No 276
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.14 E-value=1.9e-10 Score=98.10 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=145.1
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~ 101 (357)
|..+|+.+-|+ ...+|+++.| .+..||+.....++..+.. -...-..++|+-.. +++.+..+.|++||.+.
T Consensus 113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~---w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS---WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRK 189 (1081)
T ss_pred CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec---ccccCceeeecccCcchhhhccCCceEEEeccC
Confidence 99999999999 7899999999 9999999444455555554 55566788898432 55566667899999998
Q ss_pred ccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 102 SRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
+.....-. ++|...|+.+.|+. ..+.+.+.||+|+.||..........
T Consensus 190 gs~pl~s~-----------------------------K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 190 GSTPLCSL-----------------------------KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred CCcceEEe-----------------------------cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 76433222 27888899999988 88999999999999998764433322
Q ss_pred cccccccEEEEEEecCC--eEEE-EeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec--------CC-
Q 038568 179 NKAHEDAVNAVVVSDNG--VVYT-GSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG--------DG- 246 (357)
Q Consensus 179 ~~~~~~~v~~~~~~~~~--~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~- 246 (357)
......++..-++.|-| +++- --.+..+.+++.+..+..........++..+.+|...|...-|-. +.
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence 23456677777777744 3222 112235666665543333233345678899999999887665543 21
Q ss_pred -CEEEEEecCCeEEEEecc
Q 038568 247 -SLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 247 -~~l~~~~~dg~i~vwd~~ 264 (357)
-.|++=+.|..+++|-+.
T Consensus 321 dfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ceeEEEeecCCceEeeecc
Confidence 279999999999999875
No 277
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=4.9e-10 Score=87.13 Aligned_cols=166 Identities=18% Similarity=0.166 Sum_probs=118.6
Q ss_pred EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec-CCeEEEEeCCCeEEEEEccccccccccc-cceeeeeEeecc
Q 038568 156 YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD-NGVVYTGSADGRIRVWERSVVDHNKERK-SRHMLVTTLVKH 233 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~ 233 (357)
++.+.+-.+-+-|++++... .| ...+.|.++.|.. +..++.|+.+|.|..+|++ ... ....+...+ -|
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf--~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR------~rnqG~~~~a~rl-yh 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SF--QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLR------CRNQGNGWCAQRL-YH 297 (425)
T ss_pred ecccccceeEEEEeeccccc-cc--ccchhHHHHHhcccCCeeEecccCCcEEEEEee------ecccCCCcceEEE-Ec
Confidence 56666778888898876533 33 3667788888887 4479999999999999999 332 123333333 38
Q ss_pred ccceeEEEEec-CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee--c--CceEEEecCCCeEEEeeCCC
Q 038568 234 RSTVNALALNG-DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN--V--GDLLASGSADRTVRIWQRGK 308 (357)
Q Consensus 234 ~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~vw~~~~ 308 (357)
.+.|+++..-. ++.+|++.+.+|+|.+||++..+...-+....||.+...-+-+ + ...+++++.|...|+|.++.
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 89999988776 7789999999999999999977754456777788654433222 2 23889999999999999998
Q ss_pred CcceeeeeeecC----CcCceEEEEEeeCC
Q 038568 309 ENCYRCMAFLEG----HEKPVKSLVAISSS 334 (357)
Q Consensus 309 ~~~~~~~~~~~~----h~~~v~~~~~~~~~ 334 (357)
+ ..+.++.. ....+.+++|...-
T Consensus 378 g---hLl~tipf~~s~~e~d~~sv~~~sr~ 404 (425)
T KOG2695|consen 378 G---HLLCTIPFPYSASEVDIPSVAFDSRL 404 (425)
T ss_pred C---ceeeccCCCCccccccccceehhccc
Confidence 8 44444432 22356677776543
No 278
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.12 E-value=6.5e-07 Score=73.26 Aligned_cols=262 Identities=7% Similarity=-0.009 Sum_probs=145.8
Q ss_pred CceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEee---------cCCeEEEEecCCccceeeeeecCccc
Q 038568 48 NEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAH---------QDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 48 d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~---------~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
+.|.+.|. ++.+.+..+.. -..+ ..+ ++||+ .++.+ .+..|.+||..+.+....+...+...
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~---G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDG---GFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEc---cCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 38999999 88888888875 2222 234 89986 44445 58899999999988766655322100
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEe-c-CCeEEEEEcCcchhhhhccccccccEEEEEE
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVS-W-DRSFKIWNASNYKCLESVNKAHEDAVNAVVV 191 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 191 (357)
. .....-..++++| ++++... . +..|.+.|+.+++.+.++.. .....-...
T Consensus 101 ~-----------------------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t 155 (352)
T TIGR02658 101 F-----------------------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPT 155 (352)
T ss_pred h-----------------------hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEe
Confidence 0 0112234567777 5666555 3 78999999999999888722 222222222
Q ss_pred ecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee-EEEEec-CCCEEEEEecCCeEEEEecccCCce
Q 038568 192 SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN-ALALNG-DGSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 192 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
.+..+.+-+.||......+.... +........+.....++. .-.|.+ +|+++++..+ |+|.+.|+......
T Consensus 156 -~e~~~~~~~~Dg~~~~v~~d~~g-----~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~ 228 (352)
T TIGR02658 156 -ANDTFFMHCRDGSLAKVGYGTKG-----NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAK 228 (352)
T ss_pred -cCCccEEEeecCceEEEEecCCC-----ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcce
Confidence 22223344556665554443111 000000011111000100 004456 8888888776 99999996543211
Q ss_pred e--eeeeccC-------CccceEEEeecC--ceEEE-e---------cCCCeEEEeeCCCCcceeeeeeecCCcCceEEE
Q 038568 270 V--FAEALWG-------HTGALLCLINVG--DLLAS-G---------SADRTVRIWQRGKENCYRCMAFLEGHEKPVKSL 328 (357)
Q Consensus 270 ~--~~~~~~~-------~~~~v~~~~~~~--~~l~~-~---------~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~ 328 (357)
. ....+.. ..+...-+++++ +.++. . ...+.|.++|..+. +.+..+.. ...+..+
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~i 304 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSI 304 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeE
Confidence 1 1111100 112222255554 44444 2 12258999999987 45555443 3578999
Q ss_pred EEeeCCCCCCCCeEEE-EEcCCCCeEEecC
Q 038568 329 VAISSSSSASNGIVSI-GSGSLNGEIKVWD 357 (357)
Q Consensus 329 ~~~~~~~~~~~~~~~l-~s~~~dg~v~~wd 357 (357)
+++||++ ..| ++...++.|.+.|
T Consensus 305 avS~Dgk------p~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 305 NVSQDAK------PLLYALSTGDKTLYIFD 328 (352)
T ss_pred EECCCCC------eEEEEeCCCCCcEEEEE
Confidence 9999986 244 4554678888765
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=4.6e-09 Score=83.41 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=101.1
Q ss_pred cceEEEeeCC-ceEEEeccCCcc---ccceeccccCCCCceEEEEEec---Cc--eEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYS---HVDTFSNDLSSSGSVKSITFHI---TK--IFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~---~~~~~~~~~~~~~~v~~l~~~~---~~--l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
+++||++..+ ...++++..+.+ .+..+. -...-+++.|.. .. ...++....+.+|....+.....
T Consensus 74 ~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~----v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~-- 147 (390)
T KOG3914|consen 74 GRLVAVATSSKQRAVFDYRENPKGAKLLDVSC----VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI-- 147 (390)
T ss_pred ceEEEEEeCCCceEEEEEecCCCcceeeeEee----cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh--
Confidence 7889988888 777777733322 122222 222333444433 22 22334455566666554322111
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEE
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN 187 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~ 187 (357)
.+|-+.+++++++| .+++++..|..|++-.....-.+..+..+|...|.
T Consensus 148 -----------------------------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 148 -----------------------------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred -----------------------------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 29999999999999 89999999999999998887788888789999999
Q ss_pred EEEEecCCeEEEEeCCCeEEEEEcccc
Q 038568 188 AVVVSDNGVVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 188 ~~~~~~~~~l~~~~~d~~i~i~d~~~~ 214 (357)
.++.-++..|++++.|+++++||++.+
T Consensus 199 ~isl~~~~~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 199 TISLTDNYLLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred eeeeccCceeeecCCCCcEEEEecccC
Confidence 999998888999999999999999843
No 280
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1e-07 Score=81.62 Aligned_cols=235 Identities=12% Similarity=-0.002 Sum_probs=129.1
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc----e-EEeecCC--eEEEEecCCccceeeeeecCccccceeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK----I-FTAHQDC--KIRVWKITASRQHQLVSTLPTVKDRLIRS 121 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~----l-~~~~~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 121 (357)
.|.+.|. +.. ..+.+.. ....+.+=+|+||+ + ++...+| .|.+.++.+++.. .+..+
T Consensus 166 ~l~~~d~-dG~-~~~~lt~---~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~---------- 229 (428)
T PRK01029 166 ELWSVDY-DGQ-NLRPLTQ---EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILAL---------- 229 (428)
T ss_pred eEEEEcC-CCC-CceEccc---CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecC----------
Confidence 5666666 443 3344543 55566778999995 2 2343443 4777788766532 22222
Q ss_pred ecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-----CCeEEEEEcCcc--hhhhhccccccccEEEEEEe
Q 038568 122 VLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-----DRSFKIWNASNY--KCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~ 192 (357)
.+......|+| +.|+..+. +-.+..|++..+ .....+...........+|+
T Consensus 230 --------------------~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS 289 (428)
T PRK01029 230 --------------------QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS 289 (428)
T ss_pred --------------------CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence 23334568888 45554442 223445776653 12222212222334578999
Q ss_pred cCCe-EEEEe-CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCC
Q 038568 193 DNGV-VYTGS-ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDH 267 (357)
Q Consensus 193 ~~~~-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~ 267 (357)
|||. |+..+ .+|...+|.+... . .......+..+...+....|+|||+.|+..+.+ ..|.+||+.+++
T Consensus 290 PDG~~Laf~s~~~g~~~ly~~~~~----~---~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~ 362 (428)
T PRK01029 290 PDGTRLVFVSNKDGRPRIYIMQID----P---EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR 362 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECc----c---cccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 9994 55444 4666666654310 0 011122233344566788999999988876543 469999998776
Q ss_pred ceeeeeeccCCccceEEEeecCc--eEE-EecC--CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCC
Q 038568 268 RMVFAEALWGHTGALLCLINVGD--LLA-SGSA--DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSS 334 (357)
Q Consensus 268 ~~~~~~~~~~~~~~v~~~~~~~~--~l~-~~~~--dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 334 (357)
.... ......+....|+++ .|+ ++.. ...|+++|+..++. + .+....+.+...+|+|..
T Consensus 363 ~~~L----t~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~---~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 363 DYQL----TTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-R---KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred eEEc----cCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-E---EeecCCCcccCceecCCC
Confidence 4322 112223445666655 444 3332 45788889887632 2 222234456677888753
No 281
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=6.3e-09 Score=83.96 Aligned_cols=250 Identities=12% Similarity=0.137 Sum_probs=166.1
Q ss_pred CccceeEEEEe-cceEEEeeCC-ceEEEeccC--CccccceeccccCCCCceEEEEEecCc--eEEeec-CCeEEEEecC
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-EINVFDLIS--DYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ-DCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~i~iw~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~-d~~i~vwd~~ 100 (357)
|.+.|+.+... .+++.+|+.| .++.|.... .-+.+..+.. |...|.+++.+-++ +.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFra---HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA---HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHH---HHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 99999999888 9999999999 999998722 1244566666 89999999999888 666566 8999999998
Q ss_pred CccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec----CeEE-EEecCCeEEEEEcCcch-h
Q 038568 101 ASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ----GLMY-SVSWDRSFKIWNASNYK-C 174 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~-~~~~dg~i~iwd~~~~~-~ 174 (357)
+-.....++.. ...+.+ ++..++ ..++ +.-.+|.+.++|-...- +
T Consensus 85 n~DminmiKL~----------------------------~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q 135 (558)
T KOG0882|consen 85 NFDMINMIKLV----------------------------DLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ 135 (558)
T ss_pred ccchhhhcccc----------------------------cCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence 76554333221 001111 111222 1333 33457889999976543 3
Q ss_pred hhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc-----ccceeeeeEeeccccceeEEEEecCCCE
Q 038568 175 LESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER-----KSRHMLVTTLVKHRSTVNALALNGDGSL 248 (357)
Q Consensus 175 ~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 248 (357)
...+..-|..+|.++.+.+-+ .+++....|.|.-|.....-..... -.....+..+........++.|+|++..
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 334446789999999999988 4778888999999987620000000 0111223334445667889999999999
Q ss_pred EEEEecCCeEEEEecccCCceeeeee-----------------------------ccCCccce---EEEeecCceEEEec
Q 038568 249 LFSGGCDRWIVVWERERDHRMVFAEA-----------------------------LWGHTGAL---LCLINVGDLLASGS 296 (357)
Q Consensus 249 l~~~~~dg~i~vwd~~~~~~~~~~~~-----------------------------~~~~~~~v---~~~~~~~~~l~~~~ 296 (357)
+.+-+.|..|++++.++++....+.. +..|...+ .++.-++++|+-|+
T Consensus 216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 99999999999999987764332211 11122111 23334456888777
Q ss_pred CCCeEEEeeCCCCc
Q 038568 297 ADRTVRIWQRGKEN 310 (357)
Q Consensus 297 ~dg~i~vw~~~~~~ 310 (357)
-=| |++.++.++.
T Consensus 296 ~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 296 ILG-IKVINLDTNT 308 (558)
T ss_pred cee-EEEEEeecCe
Confidence 766 7888887763
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.03 E-value=6.1e-07 Score=73.44 Aligned_cols=166 Identities=9% Similarity=0.067 Sum_probs=116.8
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEec--CceEEeecCC-eEEEEecCCccceeeeeecCccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHI--TKIFTAHQDC-KIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~--~~l~~~~~d~-~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
|++++..|..+..|.+. ..+-.++. ++.+.|.-..+.. ..++.|..|| .+-|+|.++++.....
T Consensus 332 Gd~ia~VSRGkaFi~~~-~~~~~iqv-----~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e------- 398 (668)
T COG4946 332 GDYIALVSRGKAFIMRP-WDGYSIQV-----GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE------- 398 (668)
T ss_pred CcEEEEEecCcEEEECC-CCCeeEEc-----CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-------
Confidence 89999999887777766 33333332 2677787777764 4599999999 8999999988654433
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEec
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSD 193 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 193 (357)
..-+.|.++..++ +.++.+.....|.+.|+.++.....- ....+-|+.+.|+|
T Consensus 399 ------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~lItdf~~~~ 453 (668)
T COG4946 399 ------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGLITDFDWHP 453 (668)
T ss_pred ------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccceeEEEEEcC
Confidence 3457899999999 67888888888999999998765433 56678899999999
Q ss_pred CCe-EEEEeC----CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe
Q 038568 194 NGV-VYTGSA----DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 194 ~~~-l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 253 (357)
+++ ++-+-- -..|+++|+. ..+ +.......+.=.+-+|.|++++|.--+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~----------~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMD----------GGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecC----------CCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 996 554444 4568999987 112 222222223334567888888776543
No 283
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.03 E-value=1e-08 Score=89.85 Aligned_cols=184 Identities=14% Similarity=0.213 Sum_probs=140.3
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
+..++.|+-. .+..+|+ .+.+..+...- ....|+-|..+...+.+|...|+|.+-|.++-+.+..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl-~~~~e~r~~~v---~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-------- 214 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDL-NTEKETRTTNV---SASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFD-------- 214 (1118)
T ss_pred Ccceeecchhhheeeeec-ccceeeeeeec---cCCceEEEEecCcEEEeecccceEEeecCCcCceeeeee--------
Confidence 5667777766 8888999 77776666654 444587787777779999999999999999887665554
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEec---------CCeEEEEEcCcchhhhhccccccccEEE
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSW---------DRSFKIWNASNYKCLESVNKAHEDAVNA 188 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 188 (357)
.|++.|.++....+.|++++. |.-|+|||++..+.+..+ .-+. ...-
T Consensus 215 ----------------------aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI-~~~~-~P~f 270 (1118)
T KOG1275|consen 215 ----------------------AHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI-QFPY-GPQF 270 (1118)
T ss_pred ----------------------ccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCc-cccc-Cchh
Confidence 899999999999999999886 556899999998888777 2222 2356
Q ss_pred EEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 189 VVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 189 ~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
+.|+|.- ++++++..|...+.|.. +-......+..+......+..+++++++..++.|..+|.|.+|.-+
T Consensus 271 lrf~Psl~t~~~V~S~sGq~q~vd~~------~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQSGQFQFVDTA------TLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred hhhcccccceEEEEecccceeecccc------ccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 7788865 69999999999999943 1111222233334445669999999999999999999999999743
No 284
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.02 E-value=3.1e-07 Score=78.37 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=134.7
Q ss_pred EecceEEEeeCC-ceEEEeccCCccccceeccccCC-------CCce-EEEEEecCceEEeecCCeEEEEecCCccceee
Q 038568 37 VHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS-------SGSV-KSITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 37 ~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~-------~~~v-~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
+.+..+++++.+ .+.-+|. ++++.+-........ ...+ ..+....+.++.++.++.+.-+|.++++..-.
T Consensus 67 v~~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EECCEEEEECCCCeEEEEEC-CCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 347778888877 9999999 888877665431100 0011 12334445588888899999999998876544
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEE-EEEEecCeEEEEecCCeEEEEEcCcchhhhhcccccccc-
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS-DLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDA- 185 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 185 (357)
.... ..+. +-......++.+..+|.+..+|.++|+.+..+.......
T Consensus 146 ~~~~-------------------------------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 146 TKVA-------------------------------GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred ccCC-------------------------------CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 3221 1111 111223667778889999999999999887763211100
Q ss_pred ---EEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee-Eee-ccc-cceeEEEEec--CCCEEEEEecCCe
Q 038568 186 ---VNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT-TLV-KHR-STVNALALNG--DGSLLFSGGCDRW 257 (357)
Q Consensus 186 ---v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~-~~~-~~v~~~~~~~--~~~~l~~~~~dg~ 257 (357)
..+-.. .++.++.+..+|.+..+|..+++. ..+... ... .+. .....+..+| .+..++.++.+|.
T Consensus 195 ~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~------~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 195 LRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQL------IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred ccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChh------hheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 001111 134677788899999888873222 111100 000 000 0001111122 2456777788999
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
+..+|..+++...... + + ....+...++.++.++.+|.+..+|..+++
T Consensus 268 l~ald~~tG~~~W~~~-~-~---~~~~~~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 268 LVALDLRSGQIVWKRE-Y-G---SVNDFAVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred EEEEECCCCCEEEeec-C-C---CccCcEEECCEEEEEcCCCeEEEEECCCCc
Confidence 9999999887543221 1 1 112234556788888899999999998874
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.01 E-value=8.5e-10 Score=59.65 Aligned_cols=38 Identities=32% Similarity=0.716 Sum_probs=36.0
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+++..+.+|.++|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-------EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-------cceeeCCCCEEEEEC
Confidence 56888999999999999999998 999999999999997
No 286
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=1.5e-06 Score=82.33 Aligned_cols=261 Identities=12% Similarity=0.081 Sum_probs=141.6
Q ss_pred eEEEEe---cceEEEeeCC-ceEEEeccCCccccceecccc-----------CCCCceEEEEEecCc--eEEe-ecCCeE
Q 038568 33 SCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDL-----------SSSGSVKSITFHITK--IFTA-HQDCKI 94 (357)
Q Consensus 33 ~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~-----------~~~~~v~~l~~~~~~--l~~~-~~d~~i 94 (357)
..++++ ++++++-+.+ .|++||. .. ..+..+.+.. ..-.....+++.+++ |+.+ ...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~-~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL-DG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC-CC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 346675 4455555566 9999998 54 3333332100 011235788888754 4444 345678
Q ss_pred EEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCeEEEEEcCc
Q 038568 95 RVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 95 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~ 171 (357)
+++|+.++... .+.... .... ... +...... ..-..-..+++++ ..+++.+.++.|++||..+
T Consensus 649 r~id~~~~~V~-tlag~G-~~g~---~~~--------gg~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 649 REIDFVNETVR-TLAGNG-TKGS---DYQ--------GGKKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred EEEecCCCEEE-EEeccC-cccC---CCC--------CChhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 88988765321 111100 0000 000 0000000 0011235788887 4566667789999999876
Q ss_pred chhhhhcc--------cc------ccccEEEEEEecCC-e-EEEEeCCCeEEEEEcccccccccc--cc-ceeeeeEee-
Q 038568 172 YKCLESVN--------KA------HEDAVNAVVVSDNG-V-VYTGSADGRIRVWERSVVDHNKER--KS-RHMLVTTLV- 231 (357)
Q Consensus 172 ~~~~~~~~--------~~------~~~~v~~~~~~~~~-~-l~~~~~d~~i~i~d~~~~~~~~~~--~~-~~~~~~~~~- 231 (357)
+... .+. .+ .-.....++++|++ . +++-+.++.|++||+......... .. .......+.
T Consensus 715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 5432 110 00 11235679999987 3 556667799999998732110000 00 000000000
Q ss_pred -------ccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec----------cCCccceEEEeec--CceE
Q 038568 232 -------KHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL----------WGHTGALLCLINV--GDLL 292 (357)
Q Consensus 232 -------~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~--~~~l 292 (357)
..-.....++++++|+++++-..+++|++||..++........- .+.-.....++++ ++.+
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 01112468999999998888888999999999876532221110 0111123445554 4578
Q ss_pred EEecCCCeEEEeeCCCCc
Q 038568 293 ASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~ 310 (357)
++-+.++.|++||+++++
T Consensus 874 VaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEECCCCEEEEEECCCCc
Confidence 888889999999998864
No 287
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=1.8e-07 Score=80.78 Aligned_cols=176 Identities=13% Similarity=0.053 Sum_probs=97.9
Q ss_pred cccccEEEEEEec--CeEEEEec-CC--eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EE-EEeCCCe--EEEEE
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSW-DR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VY-TGSADGR--IRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d~~--i~i~d 210 (357)
.+...+.+..|+| +.|+..+. ++ .|.+||+.+++... + ...........|+|||. |+ +...++. |.++|
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 292 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-V-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVD 292 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-e-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence 4456788889999 56665543 33 58899998776422 2 12223344689999994 54 4556665 66667
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEee
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLIN 287 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~ 287 (357)
+. . .+ ...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++... + ...++...-..++.
T Consensus 293 l~------t----g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L-t~~g~~~~~~~~Sp 359 (448)
T PRK04792 293 IA------T----KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L-TFEGEQNLGGSITP 359 (448)
T ss_pred CC------C----CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E-ecCCCCCcCeeECC
Confidence 65 1 11 2233334445677899999998876554 33 57777777665321 1 12222221123344
Q ss_pred cCceEEEecC-CC--eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 288 VGDLLASGSA-DR--TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 288 ~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++++|+..+. ++ .|.++|+.+++. +.+ ... .......|+|+++
T Consensus 360 DG~~l~~~~~~~g~~~I~~~dl~~g~~-~~l---t~~-~~d~~ps~spdG~ 405 (448)
T PRK04792 360 DGRSMIMVNRTNGKFNIARQDLETGAM-QVL---TST-RLDESPSVAPNGT 405 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCCe-EEc---cCC-CCCCCceECCCCC
Confidence 4445544433 44 456677777632 222 211 1122447999987
No 288
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.6e-07 Score=75.47 Aligned_cols=291 Identities=9% Similarity=0.080 Sum_probs=165.4
Q ss_pred eEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeec-----------CCeEEEE
Q 038568 33 SCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQ-----------DCKIRVW 97 (357)
Q Consensus 33 ~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~-----------d~~i~vw 97 (357)
+-+.|| |.||+|--..-|.+|-- ++...++.|. |. .|.-+.|+|+. |+|-+. ...++||
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG-~~f~r~~RF~----Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGG-ESFDRIQRFY----HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecC-ccHHHHHhcc----CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 457788 99999876559999998 8888888886 54 57889999975 777553 2579999
Q ss_pred ecCCccceeeeeecCccccceeeeec--CC--------CeEEEecccc-cccc---cccccEEEEEEec--CeEEEEec-
Q 038568 98 KITASRQHQLVSTLPTVKDRLIRSVL--PN--------NYVTVRRHKK-RLWL---EHWDAVSDLVVKQ--GLMYSVSW- 160 (357)
Q Consensus 98 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~-~~~~---~~~~~v~~~~~~~--~~l~~~~~- 160 (357)
|+.+|...+.+..+...........+ .+ +.+.+..... ..+. -.-..|....|+| +.||--..
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 99999877776664322111111111 11 1111111111 1111 1224567778888 44443222
Q ss_pred ----CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEE----------EeCCCeEEEEEcccccccccccccee
Q 038568 161 ----DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYT----------GSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 161 ----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~----------~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
-..+.+..+.+++.+.+. +-+.-.=..+-|-.+| +|+. .+.-..+-|+.++ + ..-
T Consensus 368 ~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir------e---KdI 437 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR------E---KDI 437 (698)
T ss_pred ccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEee------c---cCC
Confidence 123555555555555544 2233222345555555 3321 1122234455554 1 112
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEec---CCeEEEEecc-cCCceeeeeeccCCccceEEEeecCc--eEEE---ec
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGC---DRWIVVWERE-RDHRMVFAEALWGHTGALLCLINVGD--LLAS---GS 296 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~---~~ 296 (357)
++... .....|...+|-|.|+.+++-+. ..++.+|.++ +...+..+..+.. ...+.+.|+|. +++. +|
T Consensus 438 pve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s 514 (698)
T KOG2314|consen 438 PVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVS 514 (698)
T ss_pred Cceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecc
Confidence 22222 34567889999999987766543 3568889887 4444444444433 33456667765 4443 34
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
..|.+..+|..... .+... ...| -..+.+.|.|.|+ +++|++.-+.
T Consensus 515 ~~g~l~F~D~~~a~-~k~~~-~~eh-~~at~veWDPtGR-------YvvT~ss~wr 560 (698)
T KOG2314|consen 515 RRGDLEFYDTDYAD-LKDTA-SPEH-FAATEVEWDPTGR-------YVVTSSSSWR 560 (698)
T ss_pred cccceEEEecchhh-hhhcc-Cccc-cccccceECCCCC-------EEEEeeehhh
Confidence 67899999998521 11111 1123 2467899999999 9999876443
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.99 E-value=5.1e-07 Score=71.50 Aligned_cols=213 Identities=15% Similarity=0.114 Sum_probs=124.0
Q ss_pred CCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE-ecCeEEEEecCCeEEEEEc
Q 038568 91 DCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV-KQGLMYSVSWDRSFKIWNA 169 (357)
Q Consensus 91 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iwd~ 169 (357)
+|+|..||..+++..-.....+ .... ..+... ..+.+++++.++.|..||.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~---------------------------~~~~-~~~~~~~~~~~v~~~~~~~~l~~~d~ 53 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP---------------------------GIGG-PVATAVPDGGRVYVASGDGNLYALDA 53 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS---------------------------SCSS-EEETEEEETTEEEEEETTSEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCC---------------------------CCCC-ccceEEEeCCEEEEEcCCCEEEEEEC
Confidence 6889999998887665543211 1112 222233 3477888899999999999
Q ss_pred CcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe-ecc---ccceeEEEEecC
Q 038568 170 SNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VKH---RSTVNALALNGD 245 (357)
Q Consensus 170 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~---~~~v~~~~~~~~ 245 (357)
.+|+.+..+.. ...+.......++.++++..++.++.+|.. + .+.+... ... ............
T Consensus 54 ~tG~~~W~~~~--~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~------t----G~~~W~~~~~~~~~~~~~~~~~~~~~ 121 (238)
T PF13360_consen 54 KTGKVLWRFDL--PGPISGAPVVDGGRVYVGTSDGSLYALDAK------T----GKVLWSIYLTSSPPAGVRSSSSPAVD 121 (238)
T ss_dssp TTSEEEEEEEC--SSCGGSGEEEETTEEEEEETTSEEEEEETT------T----SCEEEEEEE-SSCTCSTB--SEEEEE
T ss_pred CCCCEEEEeec--cccccceeeecccccccccceeeeEecccC------C----cceeeeeccccccccccccccCceEe
Confidence 99998877732 222111124446677777788899999987 2 2222221 111 011122222233
Q ss_pred CCEEEEEecCCeEEEEecccCCceeeeeeccCCc-cc-------eEEEeecCceEEEecCCCe-EEEeeCCCCcceeeee
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT-GA-------LLCLINVGDLLASGSADRT-VRIWQRGKENCYRCMA 316 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~-------v~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~ 316 (357)
+..++++..++.|..+|+++++.+.......... .. ...+...++.++.++.++. +.+ |+.+++ .+-
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~---~~w 197 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE---KLW 197 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE---EEE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC---EEE
Confidence 7788888889999999999998654443311111 11 1333444457777777775 555 999984 222
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
... ...+..+ ...++. .|+.++.|+.|..||
T Consensus 198 ~~~--~~~~~~~-~~~~~~-------~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 198 SKP--ISGIYSL-PSVDGG-------TLYVTSSDGRLYALD 228 (238)
T ss_dssp EEC--SS-ECEC-EECCCT-------EEEEEETTTEEEEEE
T ss_pred Eec--CCCccCC-ceeeCC-------EEEEEeCCCEEEEEE
Confidence 222 2223221 334444 666666899998876
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=2.1e-08 Score=79.81 Aligned_cols=150 Identities=17% Similarity=0.265 Sum_probs=99.6
Q ss_pred EEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEe
Q 038568 187 NAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWE 262 (357)
Q Consensus 187 ~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd 262 (357)
..+..++.++ ++++..+....+++++ ......++...... ...-+++.|..+......+..-| .+.+|+
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~------~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s 138 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYR------ENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILS 138 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEe------cCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeec
Confidence 3444566664 6667777777788776 22222223322222 22334555555555555554444 445555
Q ss_pred cccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNG 340 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 340 (357)
...+ ......||-..++.++++++ +|+++..|..||+-.+... ...-...-||..-|..++.-++.
T Consensus 139 ~~~~----~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~--f~IesfclGH~eFVS~isl~~~~------ 206 (390)
T KOG3914|consen 139 ADSG----RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT--FVIESFCLGHKEFVSTISLTDNY------ 206 (390)
T ss_pred cccc----CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc--cchhhhccccHhheeeeeeccCc------
Confidence 4433 33455689999999999887 9999999999999887764 22233456899999999998886
Q ss_pred eEEEEEcCCCCeEEecC
Q 038568 341 IVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 341 ~~~l~s~~~dg~v~~wd 357 (357)
.|+|+|.|++|++||
T Consensus 207 --~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 207 --LLLSGSGDKTLRLWD 221 (390)
T ss_pred --eeeecCCCCcEEEEe
Confidence 689999999999997
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.97 E-value=2e-08 Score=77.37 Aligned_cols=207 Identities=14% Similarity=0.187 Sum_probs=135.6
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcch-h----hhhccccc------------cccEEEEEEecCC---eEE
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK-C----LESVNKAH------------EDAVNAVVVSDNG---VVY 198 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~----~~~~~~~~------------~~~v~~~~~~~~~---~l~ 198 (357)
....|+++.|.. .++++|...|.|.++.-+... | ...+ +.| ...|..+.|..++ .++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF-Qshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF-QSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh-cccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 356789999988 899999989999999755422 1 1122 222 3467888887665 488
Q ss_pred EEeCCCeEEEEEcccccccc-------------cc----c----------ccee-----eeeEe-eccccceeEEEEecC
Q 038568 199 TGSADGRIRVWERSVVDHNK-------------ER----K----------SRHM-----LVTTL-VKHRSTVNALALNGD 245 (357)
Q Consensus 199 ~~~~d~~i~i~d~~~~~~~~-------------~~----~----------~~~~-----~~~~~-~~~~~~v~~~~~~~~ 245 (357)
..+.|.+|++|.+..-...- .+ . .... +.+.. ..|..-++++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 88999999999986321000 00 0 0000 00111 346667889999998
Q ss_pred CCEEEEEecCCeEEEEecccCCceeeeeeccCCcc-----ceEEEeecCc---eEEEecCCCeEEEeeCCCCcc----ee
Q 038568 246 GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTG-----ALLCLINVGD---LLASGSADRTVRIWQRGKENC----YR 313 (357)
Q Consensus 246 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~----~~ 313 (357)
...++++ .|=+|.+|++.-......+-....|.. .|++..|+|. .+.-.++.|.|++-|++.... .+
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8877776 567799999986554334444445543 3577788886 677778899999999984210 00
Q ss_pred ---------eeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 314 ---------CMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 314 ---------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
....+.+-...|..+.|+++++ ++++-+ =-+|++||
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngr-------yIlsRd-yltvkiwD 307 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGR-------YILSRD-YLTVKIWD 307 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCc-------EEEEec-cceEEEEe
Confidence 0111223346788999999998 888765 34899997
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=1.6e-06 Score=82.27 Aligned_cols=204 Identities=11% Similarity=0.049 Sum_probs=118.3
Q ss_pred cEEEEEEec--CeEEEE-ecCCeEEEEEcCcchhhhhccc---------c-------ccccEEEEEEec-CCe-EEEEeC
Q 038568 144 AVSDLVVKQ--GLMYSV-SWDRSFKIWNASNYKCLESVNK---------A-------HEDAVNAVVVSD-NGV-VYTGSA 202 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~~~~~---------~-------~~~~v~~~~~~~-~~~-l~~~~~ 202 (357)
.-..+++.+ +.|+.+ ..++.|+++|..++.. .++.. + .-.....++++| ++. +++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 456778876 545444 4457899999866432 22100 0 012335789999 454 666677
Q ss_pred CCeEEEEEccccccccccccceeeeeEee------ccccceeEEEEecCCCEE-EEEecCCeEEEEecccCCceeeee--
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLV------KHRSTVNALALNGDGSLL-FSGGCDRWIVVWERERDHRMVFAE-- 273 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~-- 273 (357)
++.|++||........- ...... .... ..-.....++++|+++.| ++-+.++.|++||+.++.......
T Consensus 704 ~~~I~v~d~~~g~v~~~-~G~G~~-~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVF-SGDGYE-RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred CCeEEEEECCCCeEEEE-ecCCcc-ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 89999999862110000 000000 0000 011345679999998854 455567899999998654321110
Q ss_pred --------eccCC--------ccceEEEeecC--ceEEEecCCCeEEEeeCCCCcceeeeee----------ecCCcCce
Q 038568 274 --------ALWGH--------TGALLCLINVG--DLLASGSADRTVRIWQRGKENCYRCMAF----------LEGHEKPV 325 (357)
Q Consensus 274 --------~~~~~--------~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~h~~~v 325 (357)
.+... -.....+++++ +.+++-..++.|++||..++........ ..+.-...
T Consensus 782 ~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 782 PTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred cccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCc
Confidence 00000 00123455554 4778888899999999987532111110 11122357
Q ss_pred EEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 326 KSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+++++++++ ++++-+.++.|++||
T Consensus 862 ~GIavd~dG~-------lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 862 AGLALGENGR-------LFVADTNNSLIRYLD 886 (1057)
T ss_pred eEEEEeCCCC-------EEEEECCCCEEEEEE
Confidence 7899999998 888889999999996
No 293
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.96 E-value=1e-08 Score=89.83 Aligned_cols=179 Identities=12% Similarity=0.198 Sum_probs=131.9
Q ss_pred EecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 150 VKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 150 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
..+..++-|+--..+..+|+++.+..+.. .-....+.-|+. ++ .+++|...|+|.+-|.+ ..+.+.
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~-~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~----------s~~~ih 211 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTT-NVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPN----------SFETIH 211 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeee-eccCCceEEEEe--cCcEEEeecccceEEeecCC----------cCceee
Confidence 34466777777777888999988777665 333334555553 44 58999999999999988 677889
Q ss_pred EeeccccceeEEEEecCCCEEEEEec---------CCeEEEEecccCCceeeeeeccCCccceEEEeecCc---eEEEec
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGC---------DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD---LLASGS 296 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~~~~ 296 (357)
++..|.+.|..+.. .|+.|++++. |.-|+|||++..+.+.++... .++ .-+.|.|. .+++++
T Consensus 212 t~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~---~~P-~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 212 TFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP---YGP-QFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc---cCc-hhhhhcccccceEEEEe
Confidence 99999999976655 5788998875 556899999988765554432 222 22345554 889999
Q ss_pred CCCeEEEee---CCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 297 ADRTVRIWQ---RGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 297 ~dg~i~vw~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
..|...+-| +.++ ...+..+......+.++++++++. .++-|..+|.|.+|
T Consensus 286 ~sGq~q~vd~~~lsNP--~~~~~~v~p~~s~i~~fDiSsn~~-------alafgd~~g~v~~w 339 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNP--PAGVKMVNPNGSGISAFDISSNGD-------ALAFGDHEGHVNLW 339 (1118)
T ss_pred cccceeeccccccCCC--ccceeEEccCCCcceeEEecCCCc-------eEEEecccCcEeee
Confidence 999999999 4433 233344444555699999999998 99999999999999
No 294
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=3.7e-07 Score=78.23 Aligned_cols=178 Identities=13% Similarity=-0.021 Sum_probs=95.4
Q ss_pred ccEEEEEEec--Ce---EEEEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEe-CCC----eEEEE
Q 038568 143 DAVSDLVVKQ--GL---MYSVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGS-ADG----RIRVW 209 (357)
Q Consensus 143 ~~v~~~~~~~--~~---l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~-~d~----~i~i~ 209 (357)
....+-.|+| +. +++...+| .|.+.++.+++..... ..........|+||| +|+..+ .+| .+..|
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt--~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~ 262 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL--ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSF 262 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee--cCCCCccceEECCCCCEEEEEECCCCCcceeEEEe
Confidence 3445668888 22 23444443 5778888776543322 234445568999999 455433 223 34446
Q ss_pred EccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEE--ecccCCceeeeeeccCCccceEEEe
Q 038568 210 ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVW--ERERDHRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 210 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vw--d~~~~~~~~~~~~~~~~~~~v~~~~ 286 (357)
++.. .. ..................+|+|||+.|+..+ .+|...+| ++..... ....+..+...+....
T Consensus 263 ~~~~------g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~--~~~~lt~~~~~~~~p~ 333 (428)
T PRK01029 263 SLET------GA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ--SPRLLTKKYRNSSCPA 333 (428)
T ss_pred eccc------CC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc--ceEEeccCCCCcccee
Confidence 6541 10 0111122222223346789999999877665 46654455 4432111 1122222333445556
Q ss_pred ecCc--eEEEecC-C--CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 287 NVGD--LLASGSA-D--RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 287 ~~~~--~l~~~~~-d--g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|+|+ .|+..+. + ..|.+||+.+++.. .+......+....|+||++
T Consensus 334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~----~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDY----QLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCeE----EccCCCCCccceEECCCCC
Confidence 6665 5655443 2 47999999887422 2222234567889999987
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=5.5e-09 Score=56.42 Aligned_cols=38 Identities=39% Similarity=0.621 Sum_probs=35.9
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
+++..+.+|..+|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 296
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.95 E-value=3.4e-06 Score=69.12 Aligned_cols=217 Identities=10% Similarity=0.085 Sum_probs=126.3
Q ss_pred cceEEEeeC----------C-ceEEEeccCCccccceeccccC-C---CCceEEEEEecCc--eEEee-c-CCeEEEEec
Q 038568 39 NSLLYAASL----------N-EINVFDLISDYSHVDTFSNDLS-S---SGSVKSITFHITK--IFTAH-Q-DCKIRVWKI 99 (357)
Q Consensus 39 ~~~l~t~~~----------d-~i~iw~~~~~~~~~~~~~~~~~-~---~~~v~~l~~~~~~--l~~~~-~-d~~i~vwd~ 99 (357)
++.|+++.. + .|.+||. .+.+.+..+..... + ......++++||+ |+... . +..|.+.|+
T Consensus 57 g~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~ 135 (352)
T TIGR02658 57 GSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL 135 (352)
T ss_pred CCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEEC
Confidence 777777666 4 9999999 99999888874111 1 2233478899987 55444 3 789999999
Q ss_pred CCccceeeeeecCccccceeeeec---------CCCeEEEec--------ccccccccccccEEEE-EEec---CeEEEE
Q 038568 100 TASRQHQLVSTLPTVKDRLIRSVL---------PNNYVTVRR--------HKKRLWLEHWDAVSDL-VVKQ---GLMYSV 158 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~v~~~-~~~~---~~l~~~ 158 (357)
.+++....+.... ........ ......+.. ....++..-..++..- .|.+ .+++..
T Consensus 136 ~~~kvv~ei~vp~---~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 136 EGKAFVRMMDVPD---CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred CCCcEEEEEeCCC---CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9998776665421 11111111 111111111 0001111100000000 2233 344444
Q ss_pred ecCCeEEEEEcCc-----chhhhhcccc------ccccEEEEEEecCC-eEEEEe----------CCCeEEEEEcccccc
Q 038568 159 SWDRSFKIWNASN-----YKCLESVNKA------HEDAVNAVVVSDNG-VVYTGS----------ADGRIRVWERSVVDH 216 (357)
Q Consensus 159 ~~dg~i~iwd~~~-----~~~~~~~~~~------~~~~v~~~~~~~~~-~l~~~~----------~d~~i~i~d~~~~~~ 216 (357)
. .|+|.+.|+.. .+.+..+... ......-+++++++ ++++.. ..+.|.++|..
T Consensus 213 ~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~---- 287 (352)
T TIGR02658 213 Y-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK---- 287 (352)
T ss_pred c-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC----
Confidence 4 49999999543 2222222111 23344459999988 455532 22579999987
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCC-EEEEEe-cCCeEEEEecccCCceee
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGS-LLFSGG-CDRWIVVWERERDHRMVF 271 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~dg~i~vwd~~~~~~~~~ 271 (357)
..+.+..+.. ...+..++++||++ +|++.. .++.|.++|..+.+.+..
T Consensus 288 ------t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 288 ------TGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred ------CCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence 4455555542 45789999999999 777666 578899999998875443
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.95 E-value=5e-06 Score=65.86 Aligned_cols=212 Identities=13% Similarity=0.129 Sum_probs=128.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEE-ecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITF-HITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
.|..||. .+++.+........ .....+... ..+.+++++.++.|..||..+++..-......
T Consensus 4 ~l~~~d~-~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--------------- 66 (238)
T PF13360_consen 4 TLSALDP-RTGKELWSYDLGPG-IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--------------- 66 (238)
T ss_dssp EEEEEET-TTTEEEEEEECSSS-CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS---------------
T ss_pred EEEEEEC-CCCCEEEEEECCCC-CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc---------------
Confidence 7889998 88888877753111 222222234 33448888899999999999987655544311
Q ss_pred EEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccc----c-ccEEEEEEecCCeEEEEeC
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAH----E-DAVNAVVVSDNGVVYTGSA 202 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~-~~v~~~~~~~~~~l~~~~~ 202 (357)
..... .....+.++.++.++.|..+|..+++.+....... . .......+. ++.++++..
T Consensus 67 ------------~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 130 (238)
T PF13360_consen 67 ------------PISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS 130 (238)
T ss_dssp ------------CGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET
T ss_pred ------------cccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEec
Confidence 10111 23333777778788999999999999888741211 1 111222222 447888888
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccc----------e-eEEEEecCCCEEEEEecCCeEEEEecccCCceee
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST----------V-NALALNGDGSLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
++.|..+|+++ ++.+......... + ..+.+. ++ .++.++.++.+..+|+.+++...
T Consensus 131 ~g~l~~~d~~t----------G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w- 197 (238)
T PF13360_consen 131 SGKLVALDPKT----------GKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLW- 197 (238)
T ss_dssp CSEEEEEETTT----------TEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEE-
T ss_pred cCcEEEEecCC----------CcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEE-
Confidence 99999999882 3333333222211 1 222222 44 77777777764444999887432
Q ss_pred eeeccCCccceEE-EeecCceEEEecCCCeEEEeeCCCCc
Q 038568 272 AEALWGHTGALLC-LINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 272 ~~~~~~~~~~v~~-~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
.. . ...... ....++.|+.++.++.|..||+++++
T Consensus 198 -~~-~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 198 -SK-P--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EE-C--SS-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred -Ee-c--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 11 1 111333 55666777777799999999999983
No 298
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=9.7e-06 Score=64.33 Aligned_cols=255 Identities=11% Similarity=0.128 Sum_probs=147.7
Q ss_pred CccceeEEEEe--cceEEEee-C--C-ceEEEeccCC--ccccceeccccCCCCceEEEEEecCc--eEEe-ecCCeEEE
Q 038568 28 HHMIISCLAVH--NSLLYAAS-L--N-EINVFDLISD--YSHVDTFSNDLSSSGSVKSITFHITK--IFTA-HQDCKIRV 96 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~-~--d-~i~iw~~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~-~~d~~i~v 96 (357)
+.+..+-|+++ ++.|.++- . + .|-.|.+ +. ++. ..+........+-..++.++++ ++++ -..|.|.+
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-D~~~G~L-t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-DPDDGRL-TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-cCCCCeE-EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 66778889999 66777765 2 4 7777777 43 332 2121111133444889999887 4444 35688999
Q ss_pred EecCCc-cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec-CCeEEEEEcCcc
Q 038568 97 WKITAS-RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-DRSFKIWNASNY 172 (357)
Q Consensus 97 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~ 172 (357)
+.++.. .....+....-... ... -......+....+.| ++|++..- --.|.+|++..+
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~-----------------~p~-~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGS-----------------GPH-ERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred EEcccCCccccceeeeecCCC-----------------CCC-ccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 998663 32222121100000 000 001122367788888 56666643 236999999866
Q ss_pred hhhhhc--cccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEee------ccccceeEEEE
Q 038568 173 KCLESV--NKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV------KHRSTVNALAL 242 (357)
Q Consensus 173 ~~~~~~--~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~ 242 (357)
+....- ........+.|.|+|+++ .++.--+++|.+|.... .......++.+. ........|..
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP------AVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC------CCceEEEeeeeccCccccCCCCceeEEEE
Confidence 533221 124456778999999995 44566789999999872 111222222221 12345678999
Q ss_pred ecCCCEEEEEec-CCeEEEEecccCC-ceeeeeeccCCccceEEEee--cCceEEEecC-CCeEEEeeCCC
Q 038568 243 NGDGSLLFSGGC-DRWIVVWERERDH-RMVFAEALWGHTGALLCLIN--VGDLLASGSA-DRTVRIWQRGK 308 (357)
Q Consensus 243 ~~~~~~l~~~~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg~i~vw~~~~ 308 (357)
++||++|.++.. ...|.+|.+.... .+........+...-+.+.+ ++++|+++.. +..|.+|..+.
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 999999988754 3478888887543 23333333333333344444 4556666655 45788887764
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=5e-06 Score=77.51 Aligned_cols=235 Identities=16% Similarity=0.148 Sum_probs=143.4
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEE----ecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccccc
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVW----KITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA 144 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (357)
....|.++.|.++. ++.+..+|.|.+. +..... ...+. .-...
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG------------------------------~vd~G 122 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVG------------------------------SVDSG 122 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEE------------------------------EEcCc
Confidence 45789999999876 8889999999999 443322 12222 33568
Q ss_pred EEEEEEec--CeEEEEecCCeEEEEEcC---------------c--------chhhhhcc------------c-------
Q 038568 145 VSDLVVKQ--GLMYSVSWDRSFKIWNAS---------------N--------YKCLESVN------------K------- 180 (357)
Q Consensus 145 v~~~~~~~--~~l~~~~~dg~i~iwd~~---------------~--------~~~~~~~~------------~------- 180 (357)
|.+++|+| ..|+..+.++++.+.+-. . |+.-.+|. .
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d 202 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVD 202 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccc
Confidence 99999999 888888888888876411 0 11111110 0
Q ss_pred ----cccccEEEEEEecCC-eEEEEeC------CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEE
Q 038568 181 ----AHEDAVNAVVVSDNG-VVYTGSA------DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLL 249 (357)
Q Consensus 181 ----~~~~~v~~~~~~~~~-~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 249 (357)
.....-..++|-.|| ++++.+- -..+|+|+-+ +.....-..-.+--.+++|-|.|+++
T Consensus 203 ~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-----------G~L~stSE~v~gLe~~l~WrPsG~lI 271 (928)
T PF04762_consen 203 EGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-----------GELQSTSEPVDGLEGALSWRPSGNLI 271 (928)
T ss_pred cCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-----------ceEEeccccCCCccCCccCCCCCCEE
Confidence 022345678899999 4665553 2578999854 22222222222333578999999999
Q ss_pred EEEec---CCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeec-CCcC
Q 038568 250 FSGGC---DRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLE-GHEK 323 (357)
Q Consensus 250 ~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~h~~ 323 (357)
|+.-. ...|.+|.-+.-+.-...-.+......|..+.|+.+ .||..-.|. |.+|-..+-. +-....+. ....
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~ 349 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSE 349 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCC
Confidence 88765 345777765432221111122245567899999887 777766555 9999887753 22222332 2233
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
.+..+.|+|... ..|.....+|.+..
T Consensus 350 ~~~~~~Wdpe~p------~~L~v~t~~g~~~~ 375 (928)
T PF04762_consen 350 SVNFVKWDPEKP------LRLHVLTSNGQYEI 375 (928)
T ss_pred CCCceEECCCCC------CEEEEEecCCcEEE
Confidence 455699999765 24555555555544
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.92 E-value=1.3e-05 Score=63.79 Aligned_cols=209 Identities=12% Similarity=0.107 Sum_probs=123.7
Q ss_pred EEEEec-Cc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe-c
Q 038568 77 SITFHI-TK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK-Q 152 (357)
Q Consensus 77 ~l~~~~-~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 152 (357)
+..|.+ ++ +++--..+.|..|+..+++... +. ... ...+++. +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~-------------------------------~~~-~~G~~~~~~ 50 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID-------------------------------LPG-PNGMAFDRP 50 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE-------------------------------SSS-EEEEEEECT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee-------------------------------cCC-CceEEEEcc
Confidence 567887 44 4455567889999988765321 11 111 5666666 5
Q ss_pred -CeEEEEecCCeEEEEEcCcchhhhhccc---c-ccccEEEEEEecCCeEEEEeCC---------CeEEEEEcccccccc
Q 038568 153 -GLMYSVSWDRSFKIWNASNYKCLESVNK---A-HEDAVNAVVVSDNGVVYTGSAD---------GRIRVWERSVVDHNK 218 (357)
Q Consensus 153 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~~ 218 (357)
..++.+...+ +.++|..+++....... . .....+.+++.|+|.|..+... |.|..++..
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~------ 123 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD------ 123 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT------
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC------
Confidence 7777777655 55559888754433311 1 4567889999999965554432 445555543
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEE-EEecCCeEEEEecccCCc-ee---eeeeccCCccceEEEeec--Cce
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLF-SGGCDRWIVVWERERDHR-MV---FAEALWGHTGALLCLINV--GDL 291 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~-~~---~~~~~~~~~~~v~~~~~~--~~~ 291 (357)
.+ .......-...+.|+|+|+++.|+ +-+..+.|..+++..... +. .+..+....+..-.++.+ +++
T Consensus 124 -----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l 197 (246)
T PF08450_consen 124 -----GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNL 197 (246)
T ss_dssp -----SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-E
T ss_pred -----Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCE
Confidence 11 122222345568999999998776 556788899999974432 21 122222222234455555 446
Q ss_pred EEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe-eCCC
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI-SSSS 335 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~ 335 (357)
.++....+.|.+++.+ + +.+..+......+++++|. ++..
T Consensus 198 ~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 198 WVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEEEESTTSS
T ss_pred EEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEEEECCCCC
Confidence 6666678899999988 5 3344444444579999995 4433
No 301
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7.3e-09 Score=80.78 Aligned_cols=121 Identities=14% Similarity=0.256 Sum_probs=92.2
Q ss_pred ccccEEEEEEec--CeEEEEecCCeEEEEEcCcc-----hhhhhccccccccEEEEEEec-CC-eEEEEeCCCeEEEEEc
Q 038568 141 HWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNY-----KCLESVNKAHEDAVNAVVVSD-NG-VVYTGSADGRIRVWER 211 (357)
Q Consensus 141 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d~~i~i~d~ 211 (357)
..+.|.++.|.. ++++.|+.+|.|..+|++.. .+...+ -|...|+++.... ++ +|++.+.+|+|++||+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 456788888887 89999999999999999864 334444 6888999988776 44 6999999999999999
Q ss_pred cccccccccccceeeeeEeeccccceeEE--EEecCCCEEEEEecCCeEEEEecccCCcee
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNAL--ALNGDGSLLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
+..+ ..+-+..+.+|-..-..+ ...+....+++++.|-..|||.++.+..+.
T Consensus 329 R~~K-------~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 329 RATK-------CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhh-------cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 8322 122467778886544333 345567789999999999999999887543
No 302
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=8.5e-06 Score=66.98 Aligned_cols=145 Identities=11% Similarity=0.094 Sum_probs=107.6
Q ss_pred EEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCC-eEEEEEccccccccccccce
Q 038568 148 LVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADG-RIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 148 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~ 224 (357)
.+..+ ++++..|. |...+.+...+-.++ .++...|.-..+.-++ .++.|..|| .+-++|.+ .
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq---v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-----------~ 391 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ---VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-----------G 391 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE---cCCCCceEEEEEccCCcceEEeccCCceEEEEecC-----------C
Confidence 34444 77777775 677787766554443 3566667777776655 588888888 89999987 2
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCC---
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADR--- 299 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg--- 299 (357)
..+..+...-+.|.++..+|+|++++++.....|.+.|++++... ..-....+-|+.+.|+++ ++|-+--+|
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~~~lItdf~~~~nsr~iAYafP~gy~t 468 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSEYGLITDFDWHPNSRWIAYAFPEGYYT 468 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCee---EecccccceeEEEEEcCCceeEEEecCcceee
Confidence 234455566788999999999999999999999999999988743 222345677899999987 777776665
Q ss_pred -eEEEeeCCCCc
Q 038568 300 -TVRIWQRGKEN 310 (357)
Q Consensus 300 -~i~vw~~~~~~ 310 (357)
.|+++|+..++
T Consensus 469 q~Iklydm~~~K 480 (668)
T COG4946 469 QSIKLYDMDGGK 480 (668)
T ss_pred eeEEEEecCCCe
Confidence 68999998863
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.8e-07 Score=81.18 Aligned_cols=187 Identities=12% Similarity=0.103 Sum_probs=129.3
Q ss_pred CCCceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEE
Q 038568 71 SSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVV 150 (357)
Q Consensus 71 ~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 150 (357)
....++|++++...|+-|+.+|.+++.+....- ...+ .|+.. ..
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~-------------------------------~~s~~----~~ 81 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNF-------------------------------DHSSS----IL 81 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCcc-cccc-------------------------------ccccc----cc
Confidence 345677888888789999999999999986442 1111 22222 11
Q ss_pred ecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecC------CeEEEEeCCCeEEEEEccccccccccccce
Q 038568 151 KQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDN------GVVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 151 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
...++++|+.||+|.|-.+-+.+...++ ....++.+++++|+ +++++|+.-| +.++.-+-. ..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~--df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl--------gn 150 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQY--DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL--------GN 150 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeE--ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh--------cC
Confidence 1289999999999999999888877766 67789999999998 2599999988 777764411 11
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCC---ccceEEEeecCc-eEEEecCCCe
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGH---TGALLCLINVGD-LLASGSADRT 300 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~-~l~~~~~dg~ 300 (357)
.....+....++|.++.|. |+++|=++.+| |+|||..+.+.+..+...... ...-..+.|.++ .|+.| ..-+
T Consensus 151 k~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~ 226 (846)
T KOG2066|consen 151 KDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDS 226 (846)
T ss_pred ccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCe
Confidence 1111455667899999996 66888888888 999999887755433322111 111244677777 45554 4556
Q ss_pred EEEeeCCC
Q 038568 301 VRIWQRGK 308 (357)
Q Consensus 301 i~vw~~~~ 308 (357)
|+|..++.
T Consensus 227 v~i~~I~~ 234 (846)
T KOG2066|consen 227 VKICSIKK 234 (846)
T ss_pred EEEEEEec
Confidence 88888873
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.86 E-value=4.5e-06 Score=64.17 Aligned_cols=205 Identities=15% Similarity=0.160 Sum_probs=121.2
Q ss_pred cceEEEeeCCceEEEeccCCcc-ccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccc
Q 038568 39 NSLLYAASLNEINVFDLISDYS-HVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVK 115 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 115 (357)
|++||.--+..|.|=...++.. .+.+.+........=..++|+||. ||.+...|+|+++|+...... .+....
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~--- 84 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAM--- 84 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccc---
Confidence 7777776544777766633322 223333322234455789999998 888888999999999864322 221110
Q ss_pred cceeeeecCCCeEEEecccccccccccccEEEEEEec--------CeEEEEecCCeEEEEEcCcc-----hhhhhc--cc
Q 038568 116 DRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--------GLMYSVSWDRSFKIWNASNY-----KCLESV--NK 180 (357)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~~-----~~~~~~--~~ 180 (357)
.. . ..-...|..+.|.+ ..|+.-..+|.++-|-+..+ +....+ ..
T Consensus 85 ~~-----~---------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 85 SF-----P---------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred cc-----C---------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 00 0 02245666666655 26777778888888776332 122222 13
Q ss_pred cccccEEEEEEecCC-eEEEEe-CCC----------eEEEEEcccccccc--------cc--cc-ceee---e-----eE
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGS-ADG----------RIRVWERSVVDHNK--------ER--KS-RHML---V-----TT 229 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~-~d~----------~i~i~d~~~~~~~~--------~~--~~-~~~~---~-----~~ 229 (357)
.....|.++.++|.. .|++|+ ... -+..|.+-....-- .. .. .... . ..
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 346789999999986 444444 322 35566654221110 00 00 0000 0 01
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
.......|..|..+|||..|++...+|.|.+|++-+-+
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 11235679999999999999999999999999997554
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.84 E-value=2.5e-05 Score=62.12 Aligned_cols=212 Identities=16% Similarity=0.101 Sum_probs=126.7
Q ss_pred EEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEe-cCc-eEEeecCCeEEEEecCCccceee
Q 038568 34 CLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFH-ITK-IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 34 ~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~-l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
+.+|. +.++++--.. .|..|+. .+++. ..+. ... ...+++. +++ |+.+... .+.++|+.+++....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~-~~~~~-~~~~----~~~-~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDP-DTGEV-EVID----LPG-PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-TTTEE-EEEE----SSS-EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEEC-CCCeE-EEEe----cCC-CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEE
Confidence 45666 5566666566 9999998 66443 3333 222 6777777 666 7666664 456669888754433
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecC--------CeEEEEEcCcchhhhh
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWD--------RSFKIWNASNYKCLES 177 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------g~i~iwd~~~~~~~~~ 177 (357)
...... .......+++++.+ ++.++.... |.|..++.. ++...
T Consensus 76 ~~~~~~-------------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~- 128 (246)
T PF08450_consen 76 ADLPDG-------------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV- 128 (246)
T ss_dssp EEEETT-------------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-
T ss_pred eeccCC-------------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-
Confidence 332110 01345678899999 444443332 557777766 44322
Q ss_pred ccccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC
Q 038568 178 VNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
+ ...-...+.|+|+|++. +++-+..+.|..+++...... -........+....+..-.+++..+|++.++....
T Consensus 129 ~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 129 V-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE---LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp E-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC---EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred E-ecCcccccceEECCcchheeecccccceeEEEeccccccc---eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 2 23455678999999993 456677888999998621110 00112222233333457889999999988888889
Q ss_pred CeEEEEecccCCceeeeeeccCCccceEEEeec
Q 038568 256 RWIVVWERERDHRMVFAEALWGHTGALLCLINV 288 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 288 (357)
+.|.++|.+ ++....+.. ....+++++|.
T Consensus 205 ~~I~~~~p~-G~~~~~i~~---p~~~~t~~~fg 233 (246)
T PF08450_consen 205 GRIVVFDPD-GKLLREIEL---PVPRPTNCAFG 233 (246)
T ss_dssp TEEEEEETT-SCEEEEEE----SSSSEEEEEEE
T ss_pred CEEEEECCC-ccEEEEEcC---CCCCEEEEEEE
Confidence 999999988 664433332 22367888884
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=9.4e-06 Score=62.47 Aligned_cols=186 Identities=11% Similarity=0.134 Sum_probs=108.6
Q ss_pred ccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhcc------ccccccEEEEEEecCC-------eEEEEeCCCeEE
Q 038568 143 DAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVN------KAHEDAVNAVVVSDNG-------VVYTGSADGRIR 207 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~-------~l~~~~~d~~i~ 207 (357)
..=..++|+| .+||.+...|+|+++|+.. ..+..+. ......|..+.|.+.. .|++-..+|.++
T Consensus 44 PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3456789999 8899999999999999864 3333332 1223566677665422 477888888888
Q ss_pred EEEccccccccccccceeeeeE--eec-cccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEE
Q 038568 208 VWERSVVDHNKERKSRHMLVTT--LVK-HRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLC 284 (357)
Q Consensus 208 i~d~~~~~~~~~~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~ 284 (357)
-|-+..... ........ +.. +...|.++.++|..++|++|+.... +++. -......+++
T Consensus 123 Sy~vs~gt~-----q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~-------s~a~~~GLta 184 (282)
T PF15492_consen 123 SYLVSVGTN-----QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM-------SKASSCGLTA 184 (282)
T ss_pred eEEEEcccC-----CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc-------ccccccCceE
Confidence 887642110 11222222 222 3568999999999888887765332 0000 0011122222
Q ss_pred Eeec---CceE-EEecCCCe------EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 285 LINV---GDLL-ASGSADRT------VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 285 ~~~~---~~~l-~~~~~dg~------i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
...- |-+. ++...|+. -.+|.+-+. +...........|..|..+||+. .||+...+|.|.
T Consensus 185 WRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~~~~d~i~kmSlSPdg~-------~La~ih~sG~ls 254 (282)
T PF15492_consen 185 WRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQGQEQDGIFKMSLSPDGS-------LLACIHFSGSLS 254 (282)
T ss_pred EEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccccCCCceEEEEECCCCC-------EEEEEEcCCeEE
Confidence 2221 2222 22222221 123333321 11222223456799999999999 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+|+
T Consensus 255 LW~ 257 (282)
T PF15492_consen 255 LWE 257 (282)
T ss_pred EEe
Confidence 996
No 307
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.80 E-value=1.4e-05 Score=67.24 Aligned_cols=253 Identities=12% Similarity=0.115 Sum_probs=125.2
Q ss_pred ceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccc---cceeeeecCCCeEEEec----------cccccc
Q 038568 74 SVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVK---DRLIRSVLPNNYVTVRR----------HKKRLW 138 (357)
Q Consensus 74 ~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~ 138 (357)
.|+.+.|.++. |+.+...|.|.||.+...+....-...+... .++.....+.....+.. .....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 58899999875 9999999999999987654332000000000 00000001111111111 111223
Q ss_pred ccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhc-------cccccccEEEEEEe-----cCC----eEEEEe
Q 038568 139 LEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESV-------NKAHEDAVNAVVVS-----DNG----VVYTGS 201 (357)
Q Consensus 139 ~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~v~~~~~~-----~~~----~l~~~~ 201 (357)
....++|++++.+. .+++.|..+|.+.|.|++....+..- .......++++.|. .|+ .+++|.
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 45578999999999 99999999999999999876655442 12234567888886 244 389999
Q ss_pred CCCeEEEEEccccccccccccceeeeeEeeccccceeEEE-EecC-----------------C---CEEEEEecCCeEEE
Q 038568 202 ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA-LNGD-----------------G---SLLFSGGCDRWIVV 260 (357)
Q Consensus 202 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-----------------~---~~l~~~~~dg~i~v 260 (357)
..|.+.+|.+.... .+....+.......+.++|..+. ++.+ + .-+++...+..+++
T Consensus 163 n~G~v~~fkIlp~~---~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 163 NSGNVLTFKILPSS---NGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp TTSEEEEEEEEE-G---GG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred CCCCEEEEEEecCC---CCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 99999999885211 11111122222234556665554 3211 1 12344445677999
Q ss_pred EecccCCceeeeeeccCCccceEEEee-------cCceEEEecCCCeEEEeeCCCCcceeeeeeecC----CcCceEEEE
Q 038568 261 WERERDHRMVFAEALWGHTGALLCLIN-------VGDLLASGSADRTVRIWQRGKENCYRCMAFLEG----HEKPVKSLV 329 (357)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----h~~~v~~~~ 329 (357)
+..-+.+... +.+ ........+.+ .+..|++-..+|.|+++.+..-+ .+...+- ....+....
T Consensus 240 ~~~~~~k~~~--K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk---ei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 240 FKPPKSKGAH--KSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK---EIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp E-TT---EEE--EE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-E
T ss_pred EeCCCCcccc--eee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch---HhhcccCCCccccccccccE
Confidence 9988766422 222 22122222222 23388888899999999998753 3333322 223455566
Q ss_pred EeeCCC
Q 038568 330 AISSSS 335 (357)
Q Consensus 330 ~~~~~~ 335 (357)
++++|.
T Consensus 314 is~~Gd 319 (395)
T PF08596_consen 314 ISRNGD 319 (395)
T ss_dssp E-TTS-
T ss_pred ECCCCC
Confidence 777776
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.4e-06 Score=68.55 Aligned_cols=275 Identities=9% Similarity=0.112 Sum_probs=150.3
Q ss_pred CccceeEEEEe-cceEEEeeCC-c-----------------eEEEeccCCccccceeccccCCCCceEEEEEecCc---e
Q 038568 28 HHMIISCLAVH-NSLLYAASLN-E-----------------INVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---I 85 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d-~-----------------i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l 85 (357)
|...-.++.++ |..|+..+.- . +++.+. .+.+..+.+.+ +...|.+++|+|.. +
T Consensus 134 h~qk~f~v~r~~gcrli~y~~~~s~lv~sQks~qa~lpGvGv~~l~~-~~fkssq~lp~---~g~~IrdlafSp~~~GLl 209 (463)
T KOG1645|consen 134 HKQKSFSVGRNAGCRLIGYDESSSTLVVSQKSGQALLPGVGVQKLES-HDFKSSQILPG---EGSFIRDLAFSPFNEGLL 209 (463)
T ss_pred hcccceeeeecCCceEEecccccceeeeeccchhhcCCccceEEecc-CCcchhhcccc---cchhhhhhccCcccccee
Confidence 55555666666 5555554432 2 344444 44444555555 88899999999854 7
Q ss_pred EEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCC
Q 038568 86 FTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDR 162 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg 162 (357)
..++.+.+|+|.|+++........ .+ ..+++++|.- ++++.|..+|
T Consensus 210 ~~asl~nkiki~dlet~~~vssy~------------------------------a~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 210 GLASLGNKIKIMDLETSCVVSSYI------------------------------AY-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred eeeccCceEEEEecccceeeehee------------------------------cc-CCceeeeeccCCcceeEEeccCc
Confidence 889999999999999875443332 33 7899999987 8999999999
Q ss_pred eEEEEEcCcchh-hhhcc-ccccccEEEEEEecC------CeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccc
Q 038568 163 SFKIWNASNYKC-LESVN-KAHEDAVNAVVVSDN------GVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 163 ~i~iwd~~~~~~-~~~~~-~~~~~~v~~~~~~~~------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
.|.+||++..+- +..+. .....+|..++.-+. +-++++... .+..|++. .......++..+ +..
T Consensus 259 ~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~------~s~~~~p~vlel-e~p 330 (463)
T KOG1645|consen 259 MVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIV------FSAECLPCVLEL-EPP 330 (463)
T ss_pred eEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhh------ccccCCCccccc-CCC
Confidence 999999986542 22221 123345555443322 223333322 35566654 111112222222 234
Q ss_pred cceeEEEEecCCCE-EEEEecCC------eEEE-EecccCCceeeee-eccC------Cc-cceEEEeecCc-eEEEecC
Q 038568 235 STVNALALNGDGSL-LFSGGCDR------WIVV-WERERDHRMVFAE-ALWG------HT-GALLCLINVGD-LLASGSA 297 (357)
Q Consensus 235 ~~v~~~~~~~~~~~-l~~~~~dg------~i~v-wd~~~~~~~~~~~-~~~~------~~-~~v~~~~~~~~-~l~~~~~ 297 (357)
+...++.+++..+. |++.-.+. .|.. -|..++..+...+ ...+ +. ..+... ...+ .+..+++
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~-~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAV-EDNNYIVVVGDS 409 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecc-ccccEEEEecCC
Confidence 55666666664443 33332211 1111 0111111110000 0000 11 111111 1123 5667777
Q ss_pred CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 298 DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+.+.+||..+. +.+..+.- +.+|.+++...... +.+|++-. |..++||
T Consensus 410 tn~lil~D~~s~---evvQ~l~~-~epv~Dicp~~~n~-----~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 410 TNELILQDPHSF---EVVQTLAL-SEPVLDICPNDTNG-----SSYLALLT-DDRVHIY 458 (463)
T ss_pred cceeEEeccchh---heeeeccc-CcceeecceeecCC-----cchhhhee-cceEEEE
Confidence 899999999987 55555543 47888887655421 23676665 4466665
No 309
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.5e-05 Score=66.88 Aligned_cols=250 Identities=11% Similarity=0.047 Sum_probs=140.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCC
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNN 126 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (357)
....|+. ....+...-.. ..-.=+-+.|+|-+ |+|-.. .-|.+|--.+-...+.+
T Consensus 191 ~svfwN~-~~n~p~~ie~R---enWTetyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF------------------ 247 (698)
T KOG2314|consen 191 VSVFWNS-KFNEPSLIEER---ENWTETYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRF------------------ 247 (698)
T ss_pred eEEEccc-cCCchhhhhhh---hcceeeeEEecCCceEEEEEec-cceeeecCccHHHHHhc------------------
Confidence 3566776 33222222221 22344678999987 666555 45889975544333332
Q ss_pred eEEEecccccccccccccEEEEEEec--CeEEEEec-----------CCeEEEEEcCcchhhhhccc--cccccEEEEEE
Q 038568 127 YVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW-----------DRSFKIWNASNYKCLESVNK--AHEDAVNAVVV 191 (357)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~ 191 (357)
.| ..|.-+.|+| ++|++-+. ...++|||+.+|.....+.. .....-.-..|
T Consensus 248 -------------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frW 313 (698)
T KOG2314|consen 248 -------------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRW 313 (698)
T ss_pred -------------cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEe
Confidence 23 3477888888 88888764 25799999999999888832 12222335678
Q ss_pred ecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE--------------------------------
Q 038568 192 SDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA-------------------------------- 239 (357)
Q Consensus 192 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------------------------- 239 (357)
+.|++.++.-....|.||+...... +..-.-.-..|..
T Consensus 314 S~DdKy~Arm~~~sisIyEtpsf~l----------ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~ 383 (698)
T KOG2314|consen 314 SHDDKYFARMTGNSISIYETPSFML----------LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK 383 (698)
T ss_pred ccCCceeEEeccceEEEEecCceee----------ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc
Confidence 8888655555557888887652111 0000001112222
Q ss_pred ---------------EEEecCCCEEEEEe----------cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--e-
Q 038568 240 ---------------LALNGDGSLLFSGG----------CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--L- 291 (357)
Q Consensus 240 ---------------~~~~~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~- 291 (357)
|.|-.+|.+|+.-- .-..+.|+.++....+... ..-...+..++|.|. .
T Consensus 384 ~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~---velke~vi~FaWEP~gdkF 460 (698)
T KOG2314|consen 384 REIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV---VELKESVIAFAWEPHGDKF 460 (698)
T ss_pred ceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee---eecchheeeeeeccCCCeE
Confidence 33444555554321 1112334444432211111 123456788888775 3
Q ss_pred -EEEecC-CCeEEEeeCC-CCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcC---CCCeEEecC
Q 038568 292 -LASGSA-DRTVRIWQRG-KENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGS---LNGEIKVWD 357 (357)
Q Consensus 292 -l~~~~~-dg~i~vw~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~---~dg~v~~wd 357 (357)
+++|.. ..++.+|.++ +...+..+..+.. ...+.+.|+|.|+ +++.+. ..|.+.++|
T Consensus 461 ~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~-------fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 461 AVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGR-------FVVVAALVSRRGDLEFYD 523 (698)
T ss_pred EEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCc-------EEEEEEecccccceEEEe
Confidence 333332 4679999988 5545566666554 5678999999998 776654 456666665
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6.2e-07 Score=78.00 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=105.9
Q ss_pred cccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccccc
Q 038568 142 WDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 142 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
...++|++++..+++-|+-+|.|++.+... .....+ .|... ..+| ++++|+.||+|.+..+-
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~-~~~~~~--~~s~~------~~~Gey~asCS~DGkv~I~sl~-------- 101 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQG-NPKTNF--DHSSS------ILEGEYVASCSDDGKVVIGSLF-------- 101 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCC-cccccc--ccccc------ccCCceEEEecCCCcEEEeecc--------
Confidence 456788888889999999999999999753 332222 33332 4456 79999999999998876
Q ss_pred ccceeeeeEeeccccceeEEEEecC-----CCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGD-----GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG 295 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 295 (357)
.......+ .-..++.+++++|+ .+.+++|+.-| +.++.-+--...... .+....++|.++.|.++++|=+
T Consensus 102 --~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~lIAWa 176 (846)
T KOG2066|consen 102 --TDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGNLIAWA 176 (846)
T ss_pred --CCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCcEEEEe
Confidence 12222222 24568899999996 56899999888 777764422111111 3445678999999999999999
Q ss_pred cCCCeEEEeeCCCCc
Q 038568 296 SADRTVRIWQRGKEN 310 (357)
Q Consensus 296 ~~dg~i~vw~~~~~~ 310 (357)
+.+| |++||+.+.+
T Consensus 177 nd~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 177 NDDG-VKVYDTPTRQ 190 (846)
T ss_pred cCCC-cEEEeccccc
Confidence 9998 8999998874
No 311
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=1.3e-05 Score=70.76 Aligned_cols=202 Identities=10% Similarity=0.207 Sum_probs=130.6
Q ss_pred ceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCc-eEEEEEecCc--eEEeecCC-----eEEEEecCC
Q 038568 31 IISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGS-VKSITFHITK--IFTAHQDC-----KIRVWKITA 101 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~-v~~l~~~~~~--l~~~~~d~-----~i~vwd~~~ 101 (357)
.|+|+.-++..+|.|+.+ .|.+.+- ..+.++.|+. +... |..+-..... |++.+.|+ .++||+++.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~--s~~~~~~fqa---~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS--SFQLIRGFQA---YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc--cceeeehhee---cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 778777778899999999 8888874 5566677776 6666 4444444442 77777665 489999975
Q ss_pred ccc---eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcC--cch-
Q 038568 102 SRQ---HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNAS--NYK- 173 (357)
Q Consensus 102 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~--~~~- 173 (357)
.+. ..++.... +.+.. ......++.+++.+. +.++.|-.+|.|..+.-. ..+
T Consensus 102 ~~~n~sP~c~~~~r-----------------i~~~~---np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHR-----------------IFTIK---NPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred cCCCCCcceeeeee-----------------eeccC---CCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 431 11111000 00000 012356788888888 899999999999988422 111
Q ss_pred hhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEE
Q 038568 174 CLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSG 252 (357)
Q Consensus 174 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 252 (357)
....+......+|+.+.+..++. ++-...-..|.+|.+. ........+..|..++.|..+++....++++
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~---------gr~p~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS---------GRTPSLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec---------CCCcceeeeccCCccceeeecCCCCccEEEe
Confidence 11122245678999999998884 2333344678999886 1223344577788899999999866556666
Q ss_pred ecCCeEEEEecccCC
Q 038568 253 GCDRWIVVWERERDH 267 (357)
Q Consensus 253 ~~dg~i~vwd~~~~~ 267 (357)
+.. -+.+|+....+
T Consensus 233 ~~e-~l~fY~sd~~~ 246 (933)
T KOG2114|consen 233 GSE-FLYFYDSDGRG 246 (933)
T ss_pred cCc-eEEEEcCCCcc
Confidence 544 49999988544
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=3.5e-08 Score=86.58 Aligned_cols=193 Identities=11% Similarity=0.170 Sum_probs=131.7
Q ss_pred ceecccccCCCCCCCccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEE
Q 038568 14 HHCIASLKIPSPDPHHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFT 87 (357)
Q Consensus 14 ~~~~~~~~~~~g~~h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~ 87 (357)
++..++++. |+..-+|++|+ .+.|++|+.. .|+++++ .+|........ |..+|+-+.-+-++ |.+
T Consensus 1091 Fr~w~~frd-----~~~~fTc~afs~~~~hL~vG~~~Geik~~nv-~sG~~e~s~nc---H~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1091 FRSWRSFRD-----ETALFTCIAFSGGTNHLAVGSHAGEIKIFNV-SSGSMEESVNC---HQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred cccchhhhc-----cccceeeEEeecCCceEEeeeccceEEEEEc-cCccccccccc---cccccccccccCCcceeeee
Confidence 344455554 99999999999 7899999988 9999999 99999888888 99999999988776 444
Q ss_pred eecCC-eEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeE
Q 038568 88 AHQDC-KIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSF 164 (357)
Q Consensus 88 ~~~d~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 164 (357)
++... -..+|++.+.- .... ....-.++.|+. ..-+.|......
T Consensus 1162 ss~S~PlsaLW~~~s~~--~~~H-------------------------------sf~ed~~vkFsn~~q~r~~gt~~d~a 1208 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG--GPRH-------------------------------SFDEDKAVKFSNSLQFRALGTEADDA 1208 (1516)
T ss_pred ccccCchHHHhcccccc--Cccc-------------------------------cccccceeehhhhHHHHHhcccccce
Confidence 43333 57889986521 1111 123445777877 333444444678
Q ss_pred EEEEcCcchhhhhccc---cccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 165 KIWNASNYKCLESVNK---AHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
.+||+.++.++.++.. .....-++..|+|+..|+- .||. +||++ ..+.+..+...... -.=.
T Consensus 1209 ~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDvR----------~~~aIh~FD~ft~~-~~G~ 1273 (1516)
T KOG1832|consen 1209 LLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDVR----------IPEAIHRFDQFTDY-GGGG 1273 (1516)
T ss_pred EEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeeec----------cHHHHhhhhhheec-cccc
Confidence 9999999998887522 2223347788999886543 3553 69998 22334444333321 2235
Q ss_pred EecCCCEEEEEecCCeEEEEecccCCc
Q 038568 242 LNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
|+|.|..++.-++ |||+++-+.
T Consensus 1274 FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1274 FHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred ccCCCceEEeech-----hhhhHHHHH
Confidence 8999998887653 899987653
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5e-07 Score=73.37 Aligned_cols=205 Identities=17% Similarity=0.133 Sum_probs=137.4
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
|...|+.+.-.-.. +.+++.||.++.|.-..-.....+..+ ..|...|.+++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhF---------------------------raHL~~I~sl~ 60 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHF---------------------------RAHLGVILSLA 60 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhh---------------------------HHHHHHHHhhh
Confidence 88888888777544 999999999999987653434444333 27778888887
Q ss_pred Eec--CeEEEEec-CCeEEEEEcCcchhhhhccccccccEEEEEEecCC---eEEE-EeCCCeEEEEEcccccccccccc
Q 038568 150 VKQ--GLMYSVSW-DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG---VVYT-GSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 150 ~~~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~l~~-~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
.+- -++.+.+. |..++++|+.+...+..+....-....+...++.. .+++ ...++.+.++|-. ..
T Consensus 61 ~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~--------~d 132 (558)
T KOG0882|consen 61 VSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGF--------GD 132 (558)
T ss_pred ccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCc--------CC
Confidence 777 56667666 99999999987665544421111111122223332 2333 3457889999965 12
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee------------eeeccCCccceEEEeecCc
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF------------AEALWGHTGALLCLINVGD 290 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~ 290 (357)
..+....-.-|..+|..+.+++-+..+++....|.|.-|.....-+... ...+........++.++++
T Consensus 133 ~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~ 212 (558)
T KOG0882|consen 133 FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD 212 (558)
T ss_pred cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence 2344455567899999999999999999999999999999873111000 0011122344566666655
Q ss_pred --eEEEecCCCeEEEeeCCCCc
Q 038568 291 --LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~~~ 310 (357)
.+.+-+.|..|+++++.+++
T Consensus 213 g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 213 GAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cCcccccCcccEEEEEEeccch
Confidence 88888999999999998875
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.1e-05 Score=71.07 Aligned_cols=209 Identities=15% Similarity=0.262 Sum_probs=127.2
Q ss_pred ceEEEEEecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEeccccccccccccc-EEEEEEec
Q 038568 74 SVKSITFHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA-VSDLVVKQ 152 (357)
Q Consensus 74 ~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~ 152 (357)
.|.|+.-+...++.|+.+|.|.+.+-.- +.+..+. .+... |..+....
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~----~~~~~fq---------------------------a~~~siv~~L~~~~ 75 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF----QLIRGFQ---------------------------AYEQSIVQFLYILN 75 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc----eeeehhe---------------------------ecchhhhhHhhccc
Confidence 5555443333499999999887776331 1112221 33333 33443333
Q ss_pred --CeEEEEecCC-----eEEEEEcCcc------hhh---hhc--c-ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcc
Q 038568 153 --GLMYSVSWDR-----SFKIWNASNY------KCL---ESV--N-KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERS 212 (357)
Q Consensus 153 --~~l~~~~~dg-----~i~iwd~~~~------~~~---~~~--~-~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~ 212 (357)
++|++.+.|+ .+++||++.- +++ ..+ . .....++.+++++.+- .+++|-.+|.|..+.-.
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 5777777665 4999998643 223 111 1 1245678889998876 48999999999998644
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-e
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-L 291 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 291 (357)
. .+..+....-......+|+.+++..++..++-...-..|.+|.+. ++. .....+..|...+.|.++++. .
T Consensus 156 i------~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 156 I------LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred c------hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCc
Confidence 1 111222222233456899999999988863333445569999998 433 244556678888999998876 3
Q ss_pred -EEEecCCCeEEEeeCCCCcceeeeeeecCCcCc
Q 038568 292 -LASGSADRTVRIWQRGKENCYRCMAFLEGHEKP 324 (357)
Q Consensus 292 -l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~ 324 (357)
+++++.. .+.+|+.... ..+...-.+|...
T Consensus 228 qfIca~~e-~l~fY~sd~~--~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 228 QFICAGSE-FLYFYDSDGR--GPCFAFEVGEKKE 258 (933)
T ss_pred cEEEecCc-eEEEEcCCCc--ceeeeecCCCeEE
Confidence 6655544 5999998754 1333332255543
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.63 E-value=8.1e-05 Score=63.31 Aligned_cols=89 Identities=19% Similarity=0.217 Sum_probs=66.3
Q ss_pred EEEEcCcch--hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 165 KIWNASNYK--CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 165 ~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
.+|++...+ .+....-..+..+.+.+++|+. +++.|+.||.|.+||... .........-.++.++
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~------------~~t~~~ka~~~P~~ia 306 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR------------GVTLLAKAEFIPTLIA 306 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCC------------CeeeeeeecccceEEE
Confidence 456654433 2222224667889999999988 699999999999999761 1222223445678999
Q ss_pred EecCCCEEEEEecCCeEEEEeccc
Q 038568 242 LNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
|+|+|.++++|+..|.+.+||+.-
T Consensus 307 WHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 307 WHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EcCCCcEEEEEcCCceEEEEEeec
Confidence 999999999999999999999863
No 316
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.61 E-value=2.6e-05 Score=64.75 Aligned_cols=246 Identities=10% Similarity=0.105 Sum_probs=142.9
Q ss_pred EEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEE
Q 038568 51 NVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVT 129 (357)
Q Consensus 51 ~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (357)
.+|+. .+...-..+.. ..-++..++|+|.+ ++....-..|.+|.-........+.
T Consensus 15 ~f~~~-~s~~~~~~~~~---~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-------------------- 70 (561)
T COG5354 15 VFWNS-QSEVIHTRFES---ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-------------------- 70 (561)
T ss_pred EeecC-ccccccccccc---cCcchhheeecCcchheehhhccceEEccccchhheeeee--------------------
Confidence 44555 55555555554 66789999999988 4444444669999877655332221
Q ss_pred EecccccccccccccEEEEEEec--CeEEEEecCC---------------eEEEEEcCcchhhhhcccccccc--EE-EE
Q 038568 130 VRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDR---------------SFKIWNASNYKCLESVNKAHEDA--VN-AV 189 (357)
Q Consensus 130 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~--v~-~~ 189 (357)
...|..+.|+| ++|.+-+..+ .+.+||+.++..+..+ .....+ .. -+
T Consensus 71 ------------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf-~~~~q~~~~Wp~~ 137 (561)
T COG5354 71 ------------HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF-NGISQPYLGWPVL 137 (561)
T ss_pred ------------cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec-cccCCccccccee
Confidence 24567777777 6666665433 4999999999998888 333333 33 57
Q ss_pred EEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCC--CEEEE-----EecCCeEEEEe
Q 038568 190 VVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDG--SLLFS-----GGCDRWIVVWE 262 (357)
Q Consensus 190 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~vwd 262 (357)
.|+-+..+++--....++++++. ... ...+...++ ...+....|+|.+ ..|+. ...++++++|.
T Consensus 138 k~s~~D~y~ARvv~~sl~i~e~t-~n~------~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~s 208 (561)
T COG5354 138 KFSIDDKYVARVVGSSLYIHEIT-DNI------EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILS 208 (561)
T ss_pred eeeecchhhhhhccCeEEEEecC-Ccc------ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEE
Confidence 77776632222244678999863 110 111111221 2557778888853 34443 35678899999
Q ss_pred cccCCceeeeeeccCCccceEEEeec--CceEEE----ec-------CCCeEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINV--GDLLAS----GS-------ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~----~~-------~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
+..+..+. ...+..-.+ ..+.|. +++|+. -. .+..++|++++.. .+.....-.++|...+
T Consensus 209 Ip~~s~l~-tk~lfk~~~--~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~----~i~V~~~~~~pVhdf~ 281 (561)
T COG5354 209 IPKNSVLV-TKNLFKVSG--VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER----SIPVEKDLKDPVHDFT 281 (561)
T ss_pred ccCCCeee-eeeeEeecc--cEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc----ccceeccccccceeee
Confidence 88555332 222222222 223333 332221 11 2356888888842 2333335578999999
Q ss_pred EeeCCCCCCCCeEEEEE--cCCCCeEEec
Q 038568 330 AISSSSSASNGIVSIGS--GSLNGEIKVW 356 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s--~~~dg~v~~w 356 (357)
|.|.++ .+++ |-.+-.+.++
T Consensus 282 W~p~S~-------~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 282 WEPLSS-------RFAVISGYMPASVSVF 303 (561)
T ss_pred ecccCC-------ceeEEecccccceeec
Confidence 999987 4443 3355555544
No 317
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=0.00017 Score=54.95 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=74.0
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEE-ecCceEEeecCCeEEEEecCCccceeeeeecCcccc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITF-HITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
..+++.|+.. .+.--|. .++.....-. -...|.+-+. ..|.++.|+..|.+.+.+.+++++...+......
T Consensus 23 kT~v~igSHs~~~~avd~-~sG~~~We~i----lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v-- 95 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDP-QSGNLIWEAI----LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV-- 95 (354)
T ss_pred ceEEEEecCCceEEEecC-CCCcEEeehh----hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehhhh--
Confidence 5677777777 7777888 7766554332 3344444333 3556999999999999999999776665543211
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
..-..++++...+..|+.|+..+..|.++..++...
T Consensus 96 --------------------------k~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 96 --------------------------KVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred --------------------------ccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 111234444588999999999999999988877765
No 318
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.52 E-value=0.0002 Score=62.94 Aligned_cols=199 Identities=13% Similarity=0.173 Sum_probs=109.7
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccC---CCCce--EEEEEec-CceEEeecCCeEEEEecCCccceeeeeec
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLS---SSGSV--KSITFHI-TKIFTAHQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~---~~~~v--~~l~~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
+..++.++.+ .+.-.|. .+++.+-.+..... ....+ ..++... +.++.++.++.|.-+|.++++..-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDA-ATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEEC-CCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 6677778878 9999999 88887776653110 00011 1123333 55888889999999999998865544322
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccE-EEEEEecCeEEEEe---------cCCeEEEEEcCcchhhhhcccc
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAV-SDLVVKQGLMYSVS---------WDRSFKIWNASNYKCLESVNKA 181 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~ 181 (357)
.... ....+ ....+....++.++ .+|.+..+|..+++.+..+...
T Consensus 140 ~~~~-------------------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~ 194 (488)
T cd00216 140 DQVP-------------------------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTT 194 (488)
T ss_pred CCcC-------------------------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeecc
Confidence 1100 00000 01111124444443 4678999999999887776321
Q ss_pred ccc-------------------cE-EEEEEec-CCeEEEEeCCC------------------eEEEEEcccccccccccc
Q 038568 182 HED-------------------AV-NAVVVSD-NGVVYTGSADG------------------RIRVWERSVVDHNKERKS 222 (357)
Q Consensus 182 ~~~-------------------~v-~~~~~~~-~~~l~~~~~d~------------------~i~i~d~~~~~~~~~~~~ 222 (357)
... .+ ...++.+ .++++.++.++ .|.-+|.. +++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~------tG~~ 268 (488)
T cd00216 195 EPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDAD------TGKV 268 (488)
T ss_pred CCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCC------CCCE
Confidence 110 01 1234443 34677777665 68888877 2222
Q ss_pred ceeeeeEeeccc--------cce-eEEEEecCCC---EEEEEecCCeEEEEecccCCceeee
Q 038568 223 RHMLVTTLVKHR--------STV-NALALNGDGS---LLFSGGCDRWIVVWERERDHRMVFA 272 (357)
Q Consensus 223 ~~~~~~~~~~~~--------~~v-~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~ 272 (357)
..... ...+. .++ ..+. .-++. .++.++.+|.+..+|.++++.+...
T Consensus 269 ~W~~~--~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 269 KWFYQ--TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred EEEee--CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 22211 11111 111 1110 01333 6788889999999999999865443
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.47 E-value=0.00062 Score=58.18 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 277 GHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 277 ~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
.....+.+++++++ .++.|+.||.|.+||...+ +.....+.-..+.++|+|++. ++++|+.-|.+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-----~t~~~ka~~~P~~iaWHp~ga-------i~~V~s~qGelQ 324 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-----VTLLAKAEFIPTLIAWHPDGA-------IFVVGSEQGELQ 324 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-----eeeeeeecccceEEEEcCCCc-------EEEEEcCCceEE
Confidence 46677888888876 9999999999999999875 222223445678999999998 999999999999
Q ss_pred ecC
Q 038568 355 VWD 357 (357)
Q Consensus 355 ~wd 357 (357)
+||
T Consensus 325 ~FD 327 (545)
T PF11768_consen 325 CFD 327 (545)
T ss_pred EEE
Confidence 998
No 320
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=6.9e-08 Score=81.68 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=125.9
Q ss_pred CCceEEEEEec--Cc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 72 SGSVKSITFHI--TK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 72 ~~~v~~l~~~~--~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
...+.|+++.- +. ++.|..+|.|.+-.++...... - .+..++..+.++
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-~---------------------------E~tp~~ar~Ct~ 107 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-A---------------------------EVTPGYARPCTS 107 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-c---------------------------eecccccccccc
Confidence 44566777653 33 8888899999998876543220 0 111278889999
Q ss_pred EEEec---CeEEEEec----CCeEEEEEcCcc--hhhh--hccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccc
Q 038568 148 LVVKQ---GLMYSVSW----DRSFKIWNASNY--KCLE--SVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 148 ~~~~~---~~l~~~~~----dg~i~iwd~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~ 215 (357)
++|++ +.||+|-. |..+.|||+.++ .+.. .+.........+++|..+.+ +++|.....+.++|++.
T Consensus 108 lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq-- 185 (783)
T KOG1008|consen 108 LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ-- 185 (783)
T ss_pred cccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhh--
Confidence 99999 67777643 567999999876 2222 22122344566888887664 78888888999999981
Q ss_pred cccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEe-cccCCceeeeeeccCC----ccceEEEeecC
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWE-RERDHRMVFAEALWGH----TGALLCLINVG 289 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~~----~~~v~~~~~~~ 289 (357)
.......-....+..+..+| .++++++-. ||.|.+|| .+.-+.+ +...... ...+..++|.|
T Consensus 186 ---------s~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienp--l~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 ---------SLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENP--LQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred ---------hhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccH--HHHHhhCCCCcccceeeEEecc
Confidence 11111112334567788888 777887765 99999999 4333321 1111111 22478889988
Q ss_pred c---eEEEecCC-CeEEEeeCC
Q 038568 290 D---LLASGSAD-RTVRIWQRG 307 (357)
Q Consensus 290 ~---~l~~~~~d-g~i~vw~~~ 307 (357)
. .+++...| ++|+++|+.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 6 66666654 789999985
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2e-05 Score=63.46 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=62.8
Q ss_pred CccceeEEEEe---cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecC
Q 038568 28 HHMIISCLAVH---NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKIT 100 (357)
Q Consensus 28 h~~~i~~~~~s---~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~ 100 (357)
|...|..++|+ ..++..++.+ +|+|.|+ ++...+..+.. + ..+.+++|.-|. |+.|-..|.|.|||++
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-et~~~vssy~a---~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-ETSCVVSSYIA---Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEec-ccceeeeheec---c-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 89999999999 3478899999 9999999 88888888875 5 899999999664 9999999999999998
Q ss_pred Cccc
Q 038568 101 ASRQ 104 (357)
Q Consensus 101 ~~~~ 104 (357)
..+.
T Consensus 267 ~~~~ 270 (463)
T KOG1645|consen 267 QPEG 270 (463)
T ss_pred CCCc
Confidence 7654
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.45 E-value=0.00018 Score=66.28 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=120.8
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCc
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~ 102 (357)
-.+.|.++.|- ++-++.+..+ .|.+-|. ++.. +..... -...|.+++|+||. ++..+..+++.+-.- +-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~-et~~-~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDP-ETLE-LEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTK-DF 140 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcc-cccc-eeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEec-cc
Confidence 34689999998 6666666666 7777688 5532 333332 67899999999997 666666666655332 11
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcch-hhhhccc
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK-CLESVNK 180 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~ 180 (357)
..+......... ...+....+-|-. ..=+-|+ .|.....+....+ .+...
T Consensus 141 ~~i~E~~L~~d~-------------------------~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~-- 192 (1265)
T KOG1920|consen 141 EPIAEKPLDADD-------------------------ERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQI-- 192 (1265)
T ss_pred cchhcccccccc-------------------------ccccccceecccccceeeecc-hhhhcccccccccccccch--
Confidence 110000000000 0011111122211 1111111 1111111111100 01100
Q ss_pred cccccEEEEEEecCC-eEEEE----eCC-CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-
Q 038568 181 AHEDAVNAVVVSDNG-VVYTG----SAD-GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG- 253 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~----~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 253 (357)
...+.=+.+.|--|| ++++. ..+ +.|++||-+ +.+-..-....+--.+++|-|.|..+++-.
T Consensus 193 ~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 193 EQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------GALNSTSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred hhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------chhhcccCcccccccceeecCCCCeEeeeee
Confidence 122333568999999 45442 234 799999965 111111111222335789999999888754
Q ss_pred --cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEE---ecCCCeEEEeeCCCC
Q 038568 254 --CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLAS---GSADRTVRIWQRGKE 309 (357)
Q Consensus 254 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~---~~~dg~i~vw~~~~~ 309 (357)
.|+.|.+|.-+.-+.-...-.+......+..++|+.+ .|++ ......|++|-+.+-
T Consensus 262 ~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3567999986643221122222233344888899866 6665 445556999987763
No 323
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.44 E-value=0.00022 Score=61.03 Aligned_cols=216 Identities=13% Similarity=0.118 Sum_probs=114.1
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
.......+.++|++ +++.+.||.-.++.....+. ...+.-...+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-----------------------------------k~~G~g~~~v 75 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-----------------------------------KAFGSGLSFV 75 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE-----------------------------------EEEEE-SEEE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc-----------------------------------cccCceeEEE
Confidence 45567899999998 55557788888888432221 2234556778
Q ss_pred Eec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 150 VKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 150 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
|.+ +.+|+-..+++|.++.--+.+....+... ..+..|-. |.++....++.|.+||+. ..+.+.
T Consensus 76 w~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~--~~~~~If~---G~LL~~~~~~~i~~yDw~----------~~~~i~ 140 (443)
T PF04053_consen 76 WSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLP--FSVEKIFG---GNLLGVKSSDFICFYDWE----------TGKLIR 140 (443)
T ss_dssp E-TSSEEEEE-TTS-EEEEETTEE-TT-----S--S-EEEEE----SSSEEEEETTEEEEE-TT----------T--EEE
T ss_pred EecCccEEEEECCCeEEEEEcCccccceEEcCC--cccceEEc---CcEEEEECCCCEEEEEhh----------Hcceee
Confidence 888 88888888899999743344443444222 23333433 654444455699999998 456666
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC-----------CceeeeeeccCCccceEEEeecCceEEEecC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD-----------HRMVFAEALWGHTGALLCLINVGDLLASGSA 297 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 297 (357)
.+.. .+|..+.|++++.+++..+.+ .+.+++.+.. ..+.... .-...|.+..|.++.++-...
T Consensus 141 ~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~---E~~~~IkSg~W~~d~fiYtT~ 214 (443)
T PF04053_consen 141 RIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH---EISERIKSGCWVEDCFIYTTS 214 (443)
T ss_dssp EESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE---EE-S--SEEEEETTEEEEE-T
T ss_pred EEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE---EecceeEEEEEEcCEEEEEcC
Confidence 6653 248999999999999998866 4888776533 0111221 124567888888884444444
Q ss_pred CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 298 DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 298 dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
. .|+. +-.|+ ...+..+ ..++.=+...+..+ .+.....|+.|..+
T Consensus 215 ~-~lkY--l~~Ge-~~~i~~l---d~~~yllgy~~~~~-------~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 215 N-HLKY--LVNGE-TGIIAHL---DKPLYLLGYLPKEN-------RLYLIDRDGNVISY 259 (443)
T ss_dssp T-EEEE--EETTE-EEEEEE----SS--EEEEEETTTT-------EEEEE-TT--EEEE
T ss_pred C-eEEE--EEcCC-cceEEEc---CCceEEEEEEccCC-------EEEEEECCCCEEEE
Confidence 4 6766 33332 1223332 45677777777665 77777788777543
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.42 E-value=0.00021 Score=62.04 Aligned_cols=152 Identities=8% Similarity=0.092 Sum_probs=94.1
Q ss_pred ceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceee
Q 038568 31 IISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 31 ~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.-+|++-++++++.|+.- .+++|+. ..++....-.+ +..+.+..+..+++. ++.|+..|.|.++.+..+.....
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R-~~~~~~~~~~~--~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNR-HTGEMRKLKNE--GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEec-Cchhhhccccc--CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 345555559999999988 9999998 55443332221 134445556666654 77888889999998876432222
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcch----hhhhcccc
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYK----CLESVNKA 181 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~ 181 (357)
...-+ .. ..|...|++++|++ ..+++|...|.|..-.+.+.. ..+.+ ..
T Consensus 114 ~~~t~--------------------~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i-l~ 168 (726)
T KOG3621|consen 114 DYVTP--------------------CD----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI-LS 168 (726)
T ss_pred eeecc--------------------cc----ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhcccccee-ec
Confidence 21111 11 15889999999999 889999999999998887621 11112 33
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEEEEcc
Q 038568 182 HEDAVNAVVVSDNGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 182 ~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~ 212 (357)
....|..+.+.. ++|+++..-.. .+++.+
T Consensus 169 ~ds~IVQlD~~q-~~LLVStl~r~-~Lc~tE 197 (726)
T KOG3621|consen 169 EDSEIVQLDYLQ-SYLLVSTLTRC-ILCQTE 197 (726)
T ss_pred cCcceEEeeccc-ceehHhhhhhh-heeecc
Confidence 456666666543 34433333322 344444
No 325
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.41 E-value=3.5e-07 Score=77.56 Aligned_cols=194 Identities=14% Similarity=0.216 Sum_probs=118.2
Q ss_pred ccceeEEEEe----cceEEEeeCC-ceEEEeccCCccc-cceeccccCCCCceEEEEEecC--c-eEEee----cCCeEE
Q 038568 29 HMIISCLAVH----NSLLYAASLN-EINVFDLISDYSH-VDTFSNDLSSSGSVKSITFHIT--K-IFTAH----QDCKIR 95 (357)
Q Consensus 29 ~~~i~~~~~s----~~~l~t~~~d-~i~iw~~~~~~~~-~~~~~~~~~~~~~v~~l~~~~~--~-l~~~~----~d~~i~ 95 (357)
...+.|++.. ...+++|..+ .|-+-....+... .....+ +..++++++|++- . |++|- .|..+.
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~---~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG---YARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc---ccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 4457788776 3578888888 8888877332222 223333 8899999999984 2 55553 356799
Q ss_pred EEecCCccc--eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 96 VWKITASRQ--HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 96 vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
|||+.+.-. ...... . .+......+++|.. +++.+|.....+.++|++.
T Consensus 133 Iwdi~s~ltvPke~~~f-s--------------------------~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLF-S--------------------------SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred ceecccccCCCcccccc-c--------------------------cccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 999987521 100000 0 01122334677766 7888898888999999983
Q ss_pred ch-hhhhccccccccEEEEEEec-CCeEEEEeCCCeEEEEE-ccccccccccccceeeeeEeecc----ccceeEEEEec
Q 038568 172 YK-CLESVNKAHEDAVNAVVVSD-NGVVYTGSADGRIRVWE-RSVVDHNKERKSRHMLVTTLVKH----RSTVNALALNG 244 (357)
Q Consensus 172 ~~-~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~ 244 (357)
.. .... -....+..+.+.| ..-.++...||.|.+|| .+. ...++..+... ...+..++|+|
T Consensus 186 s~~~~~s---vnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rn---------ienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 SLDSVSS---VNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRN---------IENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhh---hhhhhcccceecCCCCCceeccccCceeeccchhh---------hccHHHHHhhCCCCcccceeeEEecc
Confidence 22 2222 2334566677777 33234455599999999 431 11222222211 22488999999
Q ss_pred CCC-EEEEEe-cCCeEEEEecc
Q 038568 245 DGS-LLFSGG-CDRWIVVWERE 264 (357)
Q Consensus 245 ~~~-~l~~~~-~dg~i~vwd~~ 264 (357)
... .+++.. ..++|+.+|+.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 332 444444 46789999986
No 326
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.00046 Score=59.15 Aligned_cols=168 Identities=5% Similarity=0.018 Sum_probs=93.3
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeec---CCeEEEEecCCccceeeeeecCccccceeeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQ---DCKIRVWKITASRQHQLVSTLPTVKDRLIRSV 122 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~---d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
.|.+=|. +. ...+.+.. . +.+..-.|+|++ ++..+. +..|.++|+.+++.....
T Consensus 170 ~l~~~d~-dg-~~~~~~~~---~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-------------- 229 (419)
T PRK04043 170 NIVLADY-TL-TYQKVIVK---G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-------------- 229 (419)
T ss_pred eEEEECC-CC-CceeEEcc---C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--------------
Confidence 6666665 43 33444442 3 377889999986 333333 356888898777543222
Q ss_pred cCCCeEEEecccccccccccccEEEEEEec--Ce-EEEEecC--CeEEEEEcCcchhhhhccccccccEEEEEEecCC-e
Q 038568 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GL-MYSVSWD--RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V 196 (357)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~ 196 (357)
...+......|+| +. +++.+.+ ..|.++|+.+++. ..+ ..+........|+||| .
T Consensus 230 -----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~L-T~~~~~d~~p~~SPDG~~ 290 (419)
T PRK04043 230 -----------------SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQI-TNYPGIDVNGNFVEDDKR 290 (419)
T ss_pred -----------------cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEc-ccCCCccCccEECCCCCE
Confidence 1123344566888 33 3444434 4688888877653 333 2223223456799999 3
Q ss_pred EE-EEeCCC--eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecC---------CeEEEEecc
Q 038568 197 VY-TGSADG--RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD---------RWIVVWERE 264 (357)
Q Consensus 197 l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~vwd~~ 264 (357)
|+ +....+ .|.+.|+. .+. .+.+ ...+. ....|+|+|+.|+..... ..|.+.|+.
T Consensus 291 I~F~Sdr~g~~~Iy~~dl~------~g~--~~rl-t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 291 IVFVSDRLGYPNIFMKKLN------SGS--VEQV-VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred EEEEECCCCCceEEEEECC------CCC--eEeC-ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 43 333344 46666665 111 1111 11111 124899999988776653 368888888
Q ss_pred cCCc
Q 038568 265 RDHR 268 (357)
Q Consensus 265 ~~~~ 268 (357)
++..
T Consensus 358 ~g~~ 361 (419)
T PRK04043 358 SDYI 361 (419)
T ss_pred CCCe
Confidence 7753
No 327
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.37 E-value=0.00021 Score=59.27 Aligned_cols=179 Identities=17% Similarity=0.241 Sum_probs=111.8
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEec--------CCeEEEEeC----------CCeEEEEEccccccccccccc
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSD--------NGVVYTGSA----------DGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..|++.|..+.+.+..+.......+.+++... ..++++|.. .|.|.++++... ......
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~~~~~~ 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---PENNFK 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS--------E
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---cccceE
Confidence 36889998888877776545555566555432 224666643 289999999821 000112
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRI 303 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~v 303 (357)
.+.+... ...++|++++-- ++ .|+++ .++.|.+|++...+.+...... .....+.++...+++++.|.....+.+
T Consensus 79 l~~i~~~-~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 79 LKLIHST-EVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEE-EESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEEE-eecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhhee-cceEEEEEEeccccEEEEEEcccCEEE
Confidence 2233322 346889988866 34 44444 3578999999977733333333 233478888888999999999888998
Q ss_pred eeCCCC-cceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 304 WQRGKE-NCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 304 w~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
+.++.. .....+.. ......++++.+-++++ .++.+..+|.+.++
T Consensus 154 ~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~-------~~i~~D~~gnl~~l 199 (321)
T PF03178_consen 154 LRYDEENNKLILVAR-DYQPRWVTAAEFLVDED-------TIIVGDKDGNLFVL 199 (321)
T ss_dssp EEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSS-------EEEEEETTSEEEEE
T ss_pred EEEEccCCEEEEEEe-cCCCccEEEEEEecCCc-------EEEEEcCCCeEEEE
Confidence 866542 22333332 23355689999987766 88899999998875
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.32 E-value=0.00048 Score=63.65 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=128.0
Q ss_pred CCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 72 SGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 72 ~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...|.++.|..+. ++.+...|.|.+-|.++... .... .-...|.+++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg------------------------------~vd~GI~aas 116 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVG------------------------------NVDNGISAAS 116 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-eeee------------------------------eccCceEEEe
Confidence 3689999999765 88888899999988776542 1221 3457899999
Q ss_pred Eec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc-ccccceee
Q 038568 150 VKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK-ERKSRHML 226 (357)
Q Consensus 150 ~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~ 226 (357)
|+| ..++..+..+++.+-+ .+..++...+. ...-.+.+.++.++....=.-+.-..+.... ......+.
T Consensus 117 wS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L-------~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 117 WSPDEELLALITGRQTLLFMT-KDFEPIAEKPL-------DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred ecCCCcEEEEEeCCcEEEEEe-ccccchhcccc-------ccccccccccceecccccceeeecchhhhccccccccccc
Confidence 999 7777777777776644 33444433210 1111222334444433321111111000000 00000000
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEe----cC-CeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEe---c
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGG----CD-RWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASG---S 296 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d-g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~---~ 296 (357)
..... -.+.=+++.|--||.++++.. .+ ..|+|||.+ +.. ...... ..+.-.+++|-| ..+++- .
T Consensus 189 ~~~~~-~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~--~~~l~~~LsWkPsgs~iA~iq~~~ 263 (1265)
T KOG1920|consen 189 LEQIE-QDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEP--VEGLQHSLSWKPSGSLIAAIQCKT 263 (1265)
T ss_pred ccchh-hccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCc--ccccccceeecCCCCeEeeeeecC
Confidence 01011 122235689999999998843 23 789999987 321 111111 122224455554 455554 3
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEE---cCCCCeEEec
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGS---GSLNGEIKVW 356 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s---~~~dg~v~~w 356 (357)
+|+.|.+|.-+.-.-......+.....+|..++|+.++. .|+. ......|++|
T Consensus 264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd-------iLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD-------ILAVVTSNLENSLVQLW 319 (1265)
T ss_pred CCCcEEEEecCCccccccccCCcccccchheeeecCCCC-------ceeeeecccccceEEEE
Confidence 466898887654221122222333444599999999998 7777 5555569988
No 329
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.32 E-value=0.0008 Score=52.70 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=102.7
Q ss_pred cccccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEe-CCCeEEEEEccccc
Q 038568 140 EHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGS-ADGRIRVWERSVVD 215 (357)
Q Consensus 140 ~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~ 215 (357)
+-...+..++|+| .++++....+.|..++. +|+.+..+........-.|++..++.++... .++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 4456799999998 46666677788888886 5787777744445678889998888655555 58999999985211
Q ss_pred cccccccceee-eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEeccc---CCceeeeee-----ccCCccceEEEe
Q 038568 216 HNKERKSRHML-VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERER---DHRMVFAEA-----LWGHTGALLCLI 286 (357)
Q Consensus 216 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~-----~~~~~~~v~~~~ 286 (357)
........... +.....+...+-.++|+|.++.|+++-+..-..+|.++. ......... .......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11000000000 111113456689999999888888887777677777764 221111110 111233457777
Q ss_pred ecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCc------CceEEEEEeeCCC
Q 038568 287 NVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHE------KPVKSLVAISSSS 335 (357)
Q Consensus 287 ~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~------~~v~~~~~~~~~~ 335 (357)
+++. +++-...+..|..+| .+++......-..+.. ..--+|+|.+++.
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 8776 777788888999999 4443222222222211 2367899999986
No 330
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00035 Score=59.90 Aligned_cols=170 Identities=9% Similarity=-0.010 Sum_probs=96.5
Q ss_pred cEEEEEEec--C-eEEEEec---CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCC--CeEEEEEccc
Q 038568 144 AVSDLVVKQ--G-LMYSVSW---DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSAD--GRIRVWERSV 213 (357)
Q Consensus 144 ~v~~~~~~~--~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d--~~i~i~d~~~ 213 (357)
....-.|+| + .++..+. +..|.++|+.+++..... ..........|+||| ++ ++.+.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~- 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA--SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN- 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe--cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC-
Confidence 667888999 4 3554443 356999999887654433 244555667899999 33 344333 467777765
Q ss_pred cccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CC--eEEEEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 214 VDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DR--WIVVWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
. .. ...+..+........|+|||+.|+..+. .+ .|++.|+.+++...... .+.. ...++.+++
T Consensus 266 -----~----g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~--~g~~--~~~~SPDG~ 331 (419)
T PRK04043 266 -----T----KT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF--HGKN--NSSVSTYKN 331 (419)
T ss_pred -----C----Cc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc--CCCc--CceECCCCC
Confidence 1 11 1222222222345579999987776653 23 68888887765322211 1221 224444455
Q ss_pred eEEEecCC---------CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 291 LLASGSAD---------RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 291 ~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.|+..... ..|.+.|+.+++. +.+. .. .......|+||++
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT---~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT---AN-GVNQFPRFSSDGG 380 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC---CC-CCcCCeEECCCCC
Confidence 55444332 3688888887642 2222 21 1233578999987
No 331
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.30 E-value=8.9e-05 Score=49.03 Aligned_cols=99 Identities=18% Similarity=0.286 Sum_probs=70.9
Q ss_pred EEEEEEec------CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc
Q 038568 145 VSDLVVKQ------GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 145 v~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
|+++++.. +.|++|+.|..|++|+-. +.+..+ .....+.+++-...++|+.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei--~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~------ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI--TETDKVTSLCSLGGGRFAYALANGTVGVYDRS------ 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE--ecccceEEEEEcCCCEEEEEecCCEEEEEeCc------
Confidence 55666655 789999999999999843 566665 55678888888888899999999999999854
Q ss_pred ccccceeeeeEeeccccceeEEEEec-C--C-CEEEEEecCCeEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNG-D--G-SLLFSGGCDRWIVV 260 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~--~-~~l~~~~~dg~i~v 260 (357)
..+-..+ .+..+.++++.. + | .-|++|-.+|.|-+
T Consensus 72 ------~RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 72 ------QRLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ------ceeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1222222 233366666544 2 2 27889988998743
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=7.5e-07 Score=78.59 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=119.1
Q ss_pred cccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-e-EEEEeCCC-eEEEEE
Q 038568 136 RLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-V-VYTGSADG-RIRVWE 210 (357)
Q Consensus 136 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~d~-~i~i~d 210 (357)
+.+..|....+|++|+. +.|+.|+..|.|+++++.+|...... ..|..+++-+.-+.+| . |.+++... -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccccccccccCCcceeeeeccccCchHHHhc
Confidence 45567888999999999 99999999999999999999999988 8999999999999888 3 44443333 567899
Q ss_pred ccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceee-eeeccCCccceEEEeecC
Q 038568 211 RSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVF-AEALWGHTGALLCLINVG 289 (357)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~ 289 (357)
+. ....+...+. .-.++.|+.....-+.|+......+||++++..+.. +....+....-.+..|+|
T Consensus 1174 ~~---------s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1174 AS---------STGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred cc---------cccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 86 1233333333 345678887655555666666799999998875433 222222233336667777
Q ss_pred c--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 290 D--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
. +++ .|| .+||++.. +.++.+......+ .=.|+|.+.
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~---~aIh~FD~ft~~~-~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIP---EAIHRFDQFTDYG-GGGFHPSGN 1279 (1516)
T ss_pred CcceEe---eCc--eeeeeccH---HHHhhhhhheecc-cccccCCCc
Confidence 6 333 344 57999876 3344443333211 224777765
No 333
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.28 E-value=0.0012 Score=52.75 Aligned_cols=234 Identities=15% Similarity=0.228 Sum_probs=135.7
Q ss_pred CceEEEEEecCc---eEEeecCCe-EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 73 GSVKSITFHITK---IFTAHQDCK-IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 73 ~~v~~l~~~~~~---l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
.....++.+|+. ++.+-.-|+ ..+||..+++....+...+. +.|.+| -
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g----------------------RHFyGH------g 56 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG----------------------RHFYGH------G 56 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC----------------------CEEecC------E
Confidence 445677888854 666666665 78899998887665543221 222244 3
Q ss_pred EEec--CeEEEEec-----CCeEEEEEcC-cchhhhhccccccccEEEEEEecCC-eEEEEeC-------CCeEEEEEcc
Q 038568 149 VVKQ--GLMYSVSW-----DRSFKIWNAS-NYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA-------DGRIRVWERS 212 (357)
Q Consensus 149 ~~~~--~~l~~~~~-----dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-------d~~i~i~d~~ 212 (357)
.|++ ++|++.-. .|.|-|||.. +.+.+..+ ..+.-....+.+.||+ .|+++.. .|..++ ++.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~ 134 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLD 134 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-Chh
Confidence 5666 66666533 5889999998 66777777 6666666778899999 4555421 122222 232
Q ss_pred cccccccc--ccceeeeeE--e--eccccceeEEEEecCCCEEEEEecCCe-------EEEEecccCCceeeeee----c
Q 038568 213 VVDHNKER--KSRHMLVTT--L--VKHRSTVNALALNGDGSLLFSGGCDRW-------IVVWERERDHRMVFAEA----L 275 (357)
Q Consensus 213 ~~~~~~~~--~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~vwd~~~~~~~~~~~~----~ 275 (357)
+++..-.. ......+.. + ..|+..+..+++.++|..++..-..|. |-+++.... +..... .
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHH
Confidence 22211110 012333333 3 347788999999999876665544332 344443321 111111 1
Q ss_pred cCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCC
Q 038568 276 WGHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNG 351 (357)
Q Consensus 276 ~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg 351 (357)
..-.+.+-+++++++ ..+|+-..|.+.+||..++ +.+.... -..+..++..+++ +++|.+...
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg---~~~~~~~--l~D~cGva~~~~~--------f~~ssG~G~ 278 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG---RLLGSVP--LPDACGVAPTDDG--------FLVSSGQGQ 278 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC---CEeeccc--cCceeeeeecCCc--------eEEeCCCcc
Confidence 233456777888665 4466667899999999998 4343332 2235566655554 666666443
No 334
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.27 E-value=0.0012 Score=54.77 Aligned_cols=178 Identities=13% Similarity=0.155 Sum_probs=98.8
Q ss_pred CeEEEEEcCcc----hhhh-hccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 162 RSFKIWNASNY----KCLE-SVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 162 g~i~iwd~~~~----~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
|.|.++++... ..+. .......++|++++-- +++|+++ ..+.|.+|++.. .. ......... ....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~------~~-~l~~~~~~~-~~~~ 131 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDN------SK-TLLKKAFYD-SPFY 131 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEET------TS-SEEEEEEE--BSSS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccC------cc-cchhhheec-ceEE
Confidence 89999999884 1222 1124567889999877 5564444 458999999972 11 112222222 2235
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCC-ceeeeeeccCCccceEEEeec--CceEEEecCCCeEEEeeCCCC----
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDH-RMVFAEALWGHTGALLCLINV--GDLLASGSADRTVRIWQRGKE---- 309 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vw~~~~~---- 309 (357)
+.++... ++++++|+....+.++..+... .+..+.. ......++++.+- ++.++.+..+|.+.++.....
T Consensus 132 i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 132 ITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS 208 (321)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred EEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
Confidence 5555554 5699999988889988665422 2323322 2234556777664 459999999999999988631
Q ss_pred ---c-ceeeeeeecCCcCceEEE---EEeeC--CCCCCCCeEEEEEcCCCCeEE
Q 038568 310 ---N-CYRCMAFLEGHEKPVKSL---VAISS--SSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 310 ---~-~~~~~~~~~~h~~~v~~~---~~~~~--~~~~~~~~~~l~s~~~dg~v~ 354 (357)
. .......+. ....|+++ .+.|. +. .......++-++.+|.|-
T Consensus 209 ~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~-~~~~~~~i~~~T~~G~Ig 260 (321)
T PF03178_consen 209 RDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSS-ESPNRPQILYGTVDGSIG 260 (321)
T ss_dssp TTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS--TTEEEEEEEEETTS-EE
T ss_pred ccccccceeEEEEE-CCCccceEEEEEeeecCCCC-cccccceEEEEecCCEEE
Confidence 1 223333333 23567777 44452 11 000122466677788775
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.26 E-value=0.0013 Score=57.93 Aligned_cols=240 Identities=13% Similarity=0.139 Sum_probs=128.2
Q ss_pred ceEEEeeCC-ceEEEeccCCccccceeccccCCCCc-----e-EEEEEecCceEEee---------cCCeEEEEecCCcc
Q 038568 40 SLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGS-----V-KSITFHITKIFTAH---------QDCKIRVWKITASR 103 (357)
Q Consensus 40 ~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~-----v-~~l~~~~~~l~~~~---------~d~~i~vwd~~~~~ 103 (357)
..++.++.+ .|+-+|. ++++.+-.+.. .... + ....+..+.++.++ .++.+.-+|..+++
T Consensus 111 ~~V~v~~~~g~v~AlD~-~TG~~~W~~~~---~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 111 RKVFFGTFDGRLVALDA-ETGKQVWKFGN---NDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred CeEEEecCCCeEEEEEC-CCCCEeeeecC---CCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 788888888 9999999 88888877764 2110 1 11222233354443 36788999999887
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEeccccccccccc-ccEE-EEEEec--CeEEEEecCC-----------------
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW-DAVS-DLVVKQ--GLMYSVSWDR----------------- 162 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~-~~~~~~--~~l~~~~~dg----------------- 162 (357)
..-............. . ... ....+ .+. ..+. ..++.+ ..++.++.++
T Consensus 187 ~~W~~~~~~~~~~~~~-~-~~~--------~~~~~-~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~ 255 (488)
T cd00216 187 LLWRFYTTEPDPNAFP-T-WGP--------DRQMW-GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYT 255 (488)
T ss_pred eeeEeeccCCCcCCCC-C-CCC--------Cccee-cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCce
Confidence 6555443211000000 0 000 00000 000 1111 233333 5667776554
Q ss_pred -eEEEEEcCcchhhhhccccccc-----cEEEEEEe----cCC----eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 163 -SFKIWNASNYKCLESVNKAHED-----AVNAVVVS----DNG----VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 163 -~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~----~~~----~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
.|.-+|.++++.+..++..... ......+. -++ .+++++.+|.+..+|.++ + +.+-
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~t------G----~~~W 325 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTT------G----KLIS 325 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCC------C----cEee
Confidence 7999999999988776322111 00001111 122 377888899999999882 2 2222
Q ss_pred EeeccccceeEEEEecCCCEEEEE------------------ecCCeEEEEecccCCceeeeeeccCCc------cc--e
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSG------------------GCDRWIVVWERERDHRMVFAEALWGHT------GA--L 282 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~--v 282 (357)
..... ...++.+| ..++.+ ..+|.+.-.|+.+++.+-..... .+. .+ .
T Consensus 326 ~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~-~~~~~~~~g~~~~~ 399 (488)
T cd00216 326 ARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG-TIRDSWNIGFPHWG 399 (488)
T ss_pred EeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC-ccccccccCCcccC
Confidence 21110 11122333 222222 24677888888888754433221 010 11 1
Q ss_pred EEEeecCceEEEecCCCeEEEeeCCCCc
Q 038568 283 LCLINVGDLLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 283 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 310 (357)
..+...++.|+.++.||.|+.+|..+++
T Consensus 400 ~~~~~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 400 GSLATAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred cceEecCCeEEEECCCCeEEEEECCCCc
Confidence 2344566789999999999999999984
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.24 E-value=1.8e-05 Score=68.35 Aligned_cols=145 Identities=18% Similarity=0.165 Sum_probs=95.6
Q ss_pred EEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccc
Q 038568 145 VSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 145 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
.+|+.-..++++.|+.-|.+.+|+-..++....-.......+.....+++.+ +++|+..|.|.++.+..... ..
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-----~~ 112 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-----RD 112 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-----Cc
Confidence 3455555599999999999999997766654443223445556667777774 78888899999998872111 11
Q ss_pred eeeeeEe-eccccceeEEEEecCCCEEEEEecCCeEEEEecccC-CceeeeeeccCCccceEEEeecCceEEE
Q 038568 224 HMLVTTL-VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD-HRMVFAEALWGHTGALLCLINVGDLLAS 294 (357)
Q Consensus 224 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 294 (357)
...+... +.|...|++++|++++..+++|...|+|..-.+++. .-......+..-.+.|..+.+...+|+.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLV 185 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLV 185 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehH
Confidence 1111111 237789999999999999999999999999888762 1111122233345566666665554333
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.24 E-value=0.0012 Score=56.46 Aligned_cols=49 Identities=12% Similarity=0.308 Sum_probs=39.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITAS 102 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~ 102 (357)
.|+||+. .|+++..+.- ..+.|.++.|+.+. |+....||.++++|+...
T Consensus 62 ~I~iys~--sG~ll~~i~w---~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPW---DSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECC--CCCEeEEEEE---CCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 3899987 5677777665 44899999999876 889999999999998743
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.22 E-value=0.00014 Score=65.80 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=95.4
Q ss_pred ceEEEeccCCccccceeccccCCCCc-eEEEEEe-------cCceEEeecCCeEEEEecCCccceeeeeecCccccceee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGS-VKSITFH-------ITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIR 120 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~-v~~l~~~-------~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 120 (357)
.|+-.|+ +.++.+..+.. +... |..++-. +...+.|-.+..+..||++-.... .+.. ..
T Consensus 505 ~ly~mDL-e~GKVV~eW~~---~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~-~~------- 571 (794)
T PF08553_consen 505 KLYKMDL-ERGKVVEEWKV---HDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDS-QS------- 571 (794)
T ss_pred ceEEEec-CCCcEEEEeec---CCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeec-cc-------
Confidence 8999999 99999999986 5433 5555432 223677888899999998854311 1110 00
Q ss_pred eecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEE
Q 038568 121 SVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYT 199 (357)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 199 (357)
..+ .......|++-.. .+||.|+.+|.||+||- .++.-.+...+.+.+|..|..+.||+-+.
T Consensus 572 ---------------k~Y-~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 572 ---------------KQY-SSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred ---------------ccc-ccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 000 3345678888888 99999999999999994 44444444367789999999999997666
Q ss_pred EeCCCeEEEEEcc
Q 038568 200 GSADGRIRVWERS 212 (357)
Q Consensus 200 ~~~d~~i~i~d~~ 212 (357)
+..+..+.+++..
T Consensus 635 aTc~tyLlLi~t~ 647 (794)
T PF08553_consen 635 ATCKTYLLLIDTL 647 (794)
T ss_pred EeecceEEEEEEe
Confidence 6667889999875
No 339
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.15 E-value=0.00043 Score=45.89 Aligned_cols=104 Identities=25% Similarity=0.365 Sum_probs=68.6
Q ss_pred eeEEEEec---CC-CEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecC-ceEEEecCCCeEEEeeCCCCcc
Q 038568 237 VNALALNG---DG-SLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG-DLLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 237 v~~~~~~~---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~ 311 (357)
|++|++.. +| +.|++|+.|..|++|+-.. .+.... -...+.++...+ ..++.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R-- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-----IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR-- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-----EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcce--
Confidence 56666654 33 5899999999999998652 222222 345566666554 49999999999999987532
Q ss_pred eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 312 YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 312 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+-..+. +..++++.+..-.. .|..-|++|-.+|.|-+
T Consensus 74 ---lWRiKS-K~~~~~~~~~D~~g---dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 ---LWRIKS-KNQVTSMAFYDING---DGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeecc-CCCeEEEEEEcCCC---CCceEEEEEecCCeEEe
Confidence 333333 23366666654332 35567999999998753
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.0048 Score=52.24 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=105.1
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEEcCcchhhh-------------------------hc-----------------c
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLE-------------------------SV-----------------N 179 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-------------------------~~-----------------~ 179 (357)
.|+.+.|.+ ..|+.|...|.|.+|.....+... .+ .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 477888888 789999999999988654321110 00 0
Q ss_pred ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeE--ee------ccccceeEEEEec-----CC
Q 038568 180 KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTT--LV------KHRSTVNALALNG-----DG 246 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~--~~------~~~~~v~~~~~~~-----~~ 246 (357)
....++|++++.+.=|.+++|+.+|.+.+.|+|.. ..+.. +. .....++++.|.. |+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGP----------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGP----------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTT----------EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCC----------eEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 22357899999998899999999999999999822 22221 11 1234677888863 33
Q ss_pred ---CEEEEEecCCeEEEEeccc--CCc--eeeeeeccCCccceEEEeec--------------------C---ceEEEec
Q 038568 247 ---SLLFSGGCDRWIVVWERER--DHR--MVFAEALWGHTGALLCLINV--------------------G---DLLASGS 296 (357)
Q Consensus 247 ---~~l~~~~~dg~i~vwd~~~--~~~--~~~~~~~~~~~~~v~~~~~~--------------------~---~~l~~~~ 296 (357)
-.|++|+..|.+.+|.+.- +.. .........+.+++..+..- + ..++...
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 3789999999999998752 111 11122222345555444311 0 1233444
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.+..+|++...+.+. ........-....+.+.+-.. ..++..|++-..||.|+++
T Consensus 233 Se~~irv~~~~~~k~---~~K~~~~~~~~~~~~vv~~~~--~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 233 SESDIRVFKPPKSKG---AHKSFDDPFLCSSASVVPTIS--RNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp -SSEEEEE-TT---E---EEEE-SS-EEEEEEEEEEEE---EEEEEEEEEEETTSEEEEE
T ss_pred cccceEEEeCCCCcc---cceeeccccccceEEEEeecc--cCCceEEEEEECCCcEEEE
Confidence 466799999887632 222222222333444532100 0012378888899999886
No 341
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.07 E-value=0.0034 Score=50.19 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=122.6
Q ss_pred cceEEEeeCC--ceEEEeccCCccccceeccccCCCCce--EEEEEecCc--eEEee-----cCCeEEEEecCCccceee
Q 038568 39 NSLLYAASLN--EINVFDLISDYSHVDTFSNDLSSSGSV--KSITFHITK--IFTAH-----QDCKIRVWKITASRQHQL 107 (357)
Q Consensus 39 ~~~l~t~~~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v--~~l~~~~~~--l~~~~-----~d~~i~vwd~~~~~~~~~ 107 (357)
+..++.+-.- ...+||. .+++..+.+.. ..+.- -.-.|++|+ |++.- ..|.|-|||... ....
T Consensus 17 ~~avafaRRPG~~~~v~D~-~~g~~~~~~~a---~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~r 90 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDC-RTGQLLQRLWA---PPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRR 90 (305)
T ss_pred CeEEEEEeCCCcEEEEEEc-CCCceeeEEcC---CCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEE
Confidence 4444455433 7778888 77777766654 22221 146799987 55543 357899999982 2234
Q ss_pred eeecCcccccee-eeecCCC-eEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcc---ccc
Q 038568 108 VSTLPTVKDRLI-RSVLPNN-YVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVN---KAH 182 (357)
Q Consensus 108 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~ 182 (357)
+.+++......- ....+++ .+.+......+-..... ..|=....+..+...|..+++.+.+.. ..|
T Consensus 91 i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR---------~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 91 IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGR---------AKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCc---------eecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 444332110000 0011111 11111111100000000 112223335567777788888776642 236
Q ss_pred cccEEEEEEecCCeEEEEeCCC--------eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe-
Q 038568 183 EDAVNAVVVSDNGVVYTGSADG--------RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG- 253 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 253 (357)
...+..+++.++|.++.+.... .|-+++... . ......+........+.+-+|++++++.++++.+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP 236 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--A---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP 236 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--c---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC
Confidence 6789999999999766665421 133333220 0 0000000011223457789999999998776555
Q ss_pred cCCeEEEEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeE
Q 038568 254 CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTV 301 (357)
Q Consensus 254 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i 301 (357)
..+.+.+||..+++.+... .-..+..++..++ ++++.+. |.+
T Consensus 237 rGg~~~~~d~~tg~~~~~~-----~l~D~cGva~~~~~f~~ssG~-G~~ 279 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSV-----PLPDACGVAPTDDGFLVSSGQ-GQL 279 (305)
T ss_pred CCCEEEEEECCCCCEeecc-----ccCceeeeeecCCceEEeCCC-ccE
Confidence 5788999999988743222 1223455666655 5555554 443
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00037 Score=62.07 Aligned_cols=97 Identities=14% Similarity=0.190 Sum_probs=73.4
Q ss_pred cceEEEee----CC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeec
Q 038568 39 NSLLYAAS----LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTL 111 (357)
Q Consensus 39 ~~~l~t~~----~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~ 111 (357)
..++|+++ .. .|.||- +++++-.... -.-.+++++|+|.. |+.|-.-|.+.+|...+.+.....
T Consensus 27 ePlfAVA~fS~er~GSVtIfa--dtGEPqr~Vt----~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~--- 97 (1416)
T KOG3617|consen 27 EPLFAVASFSPERGGSVTIFA--DTGEPQRDVT----YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV--- 97 (1416)
T ss_pred CceeEEEEecCCCCceEEEEe--cCCCCCcccc----cceehhhhccChHHHHHhhccccceeEEEecCCceeeeec---
Confidence 56777776 34 788875 5666554443 33456779999998 778888899999998776543222
Q ss_pred CccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 112 PTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
..|..+|..+.|++ +.++++..-|.+.+|....
T Consensus 98 ---------------------------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 98 ---------------------------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---------------------------cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 27899999999999 8999999999999998763
No 343
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.04 E-value=1.7e-05 Score=42.08 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=33.4
Q ss_pred eeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 313 RCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 313 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
++...+..|...|.++.|.+.+. ++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-------EEEEecCCCeEEEcC
Confidence 44566678889999999999887 999999999999997
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=4.1e-05 Score=67.78 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=82.4
Q ss_pred EEEec--CeEEEEe----cCCeEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEcccccccccc
Q 038568 148 LVVKQ--GLMYSVS----WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 148 ~~~~~--~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
..|+| .+++.++ ..|.|.||- .+|++...+ ..+-.+++++|+|... |+.|-.-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~-------- 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN-------- 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecC--------
Confidence 45777 6666665 357888885 567765554 3444567899999984 8888889999999876
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCC
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
..+.......|..++..+.|+++|..++++..-|.+.+|......
T Consensus 90 --~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g 134 (1416)
T KOG3617|consen 90 --TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG 134 (1416)
T ss_pred --CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc
Confidence 334444556799999999999999999999999999999887433
No 345
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.98 E-value=1.5e-05 Score=59.41 Aligned_cols=137 Identities=16% Similarity=0.223 Sum_probs=86.8
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeecc
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
+..-+.++.|+-++++ ..... .+...-+... .....-+..+++|+.+|.|++|+...... ......
T Consensus 33 l~~~sa~~~v~~~~~~------k~k~s---~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~ 98 (238)
T KOG2444|consen 33 LRATSADGLVRERKVR------KHKES---CRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRVC 98 (238)
T ss_pred hccccCCcccccchhh------hhhhh---hhhhhhhhcc---eeecccCceEEeecccceEEEecCCccch--HHHhhh
Confidence 5666788888888877 11110 1111111111 11112345799999999999998872221 111112
Q ss_pred CCccceEEEeecCc---eEEEecCCCeEEEeeCCCCcceeeeeeecCCc-CceEEEEEeeCCCCCCCCeEEEEEc--CCC
Q 038568 277 GHTGALLCLINVGD---LLASGSADRTVRIWQRGKENCYRCMAFLEGHE-KPVKSLVAISSSSSASNGIVSIGSG--SLN 350 (357)
Q Consensus 277 ~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~--~~d 350 (357)
.-...+.+..+.++ +..+++.||.||.|++... +.+.....|. .++..+..+..++ +++.+ |.|
T Consensus 99 s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~~~~e~~ivv~sd~-------~i~~a~~S~d 168 (238)
T KOG2444|consen 99 SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---KVLGYVGQHNFESGEELIVVGSDE-------FLKIADTSHD 168 (238)
T ss_pred cccccceeccccccccceeEEeccCCceeeeccccC---ceeeeeccccCCCcceeEEecCCc-------eEEeeccccc
Confidence 22344555555443 8899999999999999876 5566666777 6777777777766 78777 888
Q ss_pred CeEEecC
Q 038568 351 GEIKVWD 357 (357)
Q Consensus 351 g~v~~wd 357 (357)
..++.||
T Consensus 169 ~~~k~W~ 175 (238)
T KOG2444|consen 169 RVLKKWN 175 (238)
T ss_pred hhhhhcc
Confidence 8888886
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.00023 Score=64.45 Aligned_cols=100 Identities=14% Similarity=0.245 Sum_probs=73.9
Q ss_pred CeEEEEecCCeEEEEEcCcch--hhhh--ccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVSWDRSFKIWNASNYK--CLES--VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~--~~~~--~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
...+.|-.+..+..||.+-.. .+.. ..........|++-..+|+|++|+.+|.||+||-- ......
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~----------g~~AKT 612 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL----------GKRAKT 612 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc----------chhhhh
Confidence 456677778899999998532 2211 11245567889999999999999999999999942 122444
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.+.+...+|.+|..+.||++|++.+ +..+.+++.
T Consensus 613 ~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 613 ALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5567789999999999999888765 456777775
No 347
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.94 E-value=0.0076 Score=51.85 Aligned_cols=226 Identities=11% Similarity=0.054 Sum_probs=105.7
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~ 104 (357)
..-....+.++ |+++++++.+.-.|+.. ...+... .+.-...+|.+++ +++-...++|.++.--+.+.
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~-~~~r~k~--------~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTA-LAWRNKA--------FGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEET-TTTEEEE--------EEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEc-cCCcccc--------cCceeEEEEecCccEEEEECCCeEEEEEcCcccc
Confidence 33456788888 88888877666666664 3333222 2344567888755 88888888999964322322
Q ss_pred eeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccccc
Q 038568 105 HQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAHED 184 (357)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (357)
...+.. ...+..+-. ..+|+.. .++.|.+||+.+++.+..+ . . .
T Consensus 102 ~k~i~~-------------------------------~~~~~~If~-G~LL~~~-~~~~i~~yDw~~~~~i~~i-~-v-~ 145 (443)
T PF04053_consen 102 VKSIKL-------------------------------PFSVEKIFG-GNLLGVK-SSDFICFYDWETGKLIRRI-D-V-S 145 (443)
T ss_dssp T------------------------------------SS-EEEEE--SSSEEEE-ETTEEEEE-TTT--EEEEE-S-S--
T ss_pred ceEEcC-------------------------------CcccceEEc-CcEEEEE-CCCCEEEEEhhHcceeeEE-e-c-C
Confidence 112211 111222222 3444444 4558999999999999888 2 2 2
Q ss_pred cEEEEEEecCCeEEEEeCCCeEEEEEccccccccccc-cceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 185 AVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERK-SRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 185 ~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
+|..+.|++++.+++-..+..+.+++........... ...........-...|.+..|..+ .++-.+.. .|+. +
T Consensus 146 ~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l 220 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L 220 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence 4899999999854444446688888765210000000 000122222222567888888866 34433333 5665 3
Q ss_pred ccCCceeeeeeccCCccceEEEeecC--ceEEEecCCCeEEEeeCC
Q 038568 264 ERDHRMVFAEALWGHTGALLCLINVG--DLLASGSADRTVRIWQRG 307 (357)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~vw~~~ 307 (357)
-.++. ..+..+ ..++.-+.+.+ +.+.....|+.+..+.+.
T Consensus 221 ~~Ge~-~~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 221 VNGET-GIIAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTEE-EEEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCc-ceEEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 33322 233332 22333344444 677777888888877665
No 348
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.89 E-value=0.0061 Score=46.89 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=47.5
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEE---EEEecCceEEeecCCeEEEEecCCccceee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKS---ITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~---l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
|++++.|... .+++.+. +++.+...+.. .+.|.+ ++++...+..++.|++....|..+...+..
T Consensus 63 gdfVV~GCy~g~lYfl~~-~tGs~~w~f~~----~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCV-KTGSQIWNFVI----LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred CCEEEEEEccCcEEEEEe-cchhheeeeee----hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 7788889988 9999999 99988887773 333332 233333399999999999999987665443
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.88 E-value=5.6e-05 Score=39.91 Aligned_cols=37 Identities=35% Similarity=0.547 Sum_probs=32.5
Q ss_pred eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 226 LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 226 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
+...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
No 350
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.80 E-value=0.01 Score=46.59 Aligned_cols=203 Identities=9% Similarity=0.069 Sum_probs=99.0
Q ss_pred CCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
-...+..|+|.|+. +++....+.|...+.+ ++.++.+.. .-.+..-.
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l-----------------------------~g~~D~Eg 69 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL-----------------------------DGFGDYEG 69 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------------------SS-SSEEE
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC-----------------------------CCCCCcee
Confidence 55569999999964 6666677788777764 555444432 12345667
Q ss_pred EEEec-CeEEEEe-cCCeEEEEEcCcchh------hhhcc----ccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccc
Q 038568 148 LVVKQ-GLMYSVS-WDRSFKIWNASNYKC------LESVN----KAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 148 ~~~~~-~~l~~~~-~dg~i~iwd~~~~~~------~~~~~----~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~ 214 (357)
+++.. ..++... .++.+.++++..... ...+. ..++..+-.++|++.+ .|+++-...-..+|.++..
T Consensus 70 I~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~ 149 (248)
T PF06977_consen 70 ITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGF 149 (248)
T ss_dssp EEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEEST
T ss_pred EEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccc
Confidence 77777 4444444 588899988843221 11111 2345678999999976 6777777777777777621
Q ss_pred ccccccc-cceeeeeEeeccccceeEEEEecC-CCEEEEEecCCeEEEEecccCCceeeeeeccCCc------cceEEEe
Q 038568 215 DHNKERK-SRHMLVTTLVKHRSTVNALALNGD-GSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT------GALLCLI 286 (357)
Q Consensus 215 ~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~v~~~~ 286 (357)
....... ...............+.+++++|. +++++.+..+..|..+|.. ++......-..+.. ...-.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa 228 (248)
T PF06977_consen 150 PGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQPEGIA 228 (248)
T ss_dssp T-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-SS---SEEEEE
T ss_pred cCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCcccccCCccEEE
Confidence 1000000 000000001112345788999994 5677777788889999944 54333222222111 1234555
Q ss_pred ecCc-eEEEecCCCeEEEe
Q 038568 287 NVGD-LLASGSADRTVRIW 304 (357)
Q Consensus 287 ~~~~-~l~~~~~dg~i~vw 304 (357)
++++ .|...++-+..++|
T Consensus 229 ~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 229 FDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp E-TT--EEEEETTTEEEEE
T ss_pred ECCCCCEEEEcCCceEEEe
Confidence 6555 44444455544443
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00025 Score=60.83 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=73.7
Q ss_pred ccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee-EEEEecCCCEEEEEecCCeEE
Q 038568 182 HEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN-ALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 182 ~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~ 259 (357)
....+.-+.|+|.- .+|.+..+|.|.+..+. .+.+..+.-+...++ +++|.|||+.|++|-.||+|+
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-----------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~ 87 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-----------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIR 87 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-----------cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence 34567889999987 69999999999988875 455666665666666 999999999999999999999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
+.|..++..+... .......|.+..|++.
T Consensus 88 L~Dve~~~~l~~~--~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 88 LHDVEKGGRLVSF--LFSVETDISKGIWDRI 116 (665)
T ss_pred EEEccCCCceecc--ccccccchheeecccc
Confidence 9999988754321 2334556777777643
No 352
>PHA02713 hypothetical protein; Provisional
Probab=97.75 E-value=0.0089 Score=53.58 Aligned_cols=183 Identities=9% Similarity=0.127 Sum_probs=90.8
Q ss_pred CeEEEEecC------CeEEEEEcCcchh--hhhccccccccEEEEEEecCCeEEEEeCCC-----eEEEEEccccccccc
Q 038568 153 GLMYSVSWD------RSFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNGVVYTGSADG-----RIRVWERSVVDHNKE 219 (357)
Q Consensus 153 ~~l~~~~~d------g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~ 219 (357)
..++.|+.+ ..+..||..+.+- +..+ .....-.+++...+...+.|+.++ .+..||..+
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m--~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~------ 376 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM--IKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD------ 376 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC--cchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC------
Confidence 556666643 3477888776532 2222 111111233333333466677653 477888761
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecC-----------------------CeEEEEecccCCceeeeeecc
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCD-----------------------RWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------------g~i~vwd~~~~~~~~~~~~~~ 276 (357)
.....+..+.........+. -++++.+.|+.+ ..+..||..+.+ ......+.
T Consensus 377 --~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~-W~~v~~m~ 451 (557)
T PHA02713 377 --DKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI-WETLPNFW 451 (557)
T ss_pred --CeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe-EeecCCCC
Confidence 12222222221111111222 257777777754 247788887653 22222222
Q ss_pred CCccceEEEeecCceEEEecCC------CeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 277 GHTGALLCLINVGDLLASGSAD------RTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 277 ~~~~~v~~~~~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
............+...+.||.+ ..+..||.++...+..+..+.........+.. ++. +.+.||.|
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-------iyv~Gg~~ 522 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-------IMMLHCYE 522 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-------EEEEeeec
Confidence 2222223445666666667654 24678998872246666655543333322222 444 88899888
Q ss_pred C--eEEecC
Q 038568 351 G--EIKVWD 357 (357)
Q Consensus 351 g--~v~~wd 357 (357)
| .+..||
T Consensus 523 ~~~~~e~yd 531 (557)
T PHA02713 523 SYMLQDTFN 531 (557)
T ss_pred ceeehhhcC
Confidence 8 444443
No 353
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.74 E-value=0.035 Score=51.04 Aligned_cols=106 Identities=22% Similarity=0.287 Sum_probs=71.4
Q ss_pred eeEEEEecC-CCEEEEEec----------CCeEEEEecccCCceeeeeeccCCccceEEE-eecCceEEEecCCCeEEEe
Q 038568 237 VNALALNGD-GSLLFSGGC----------DRWIVVWERERDHRMVFAEALWGHTGALLCL-INVGDLLASGSADRTVRIW 304 (357)
Q Consensus 237 v~~~~~~~~-~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~dg~i~vw 304 (357)
+.+..|..| +.++++|.. .|.|.+|.+.....+....... -.+.+.++ .|++.++|.- ...|++|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~-v~Gav~aL~~fngkllA~I--n~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV-VKGAVYALVEFNGKLLAGI--NQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee-eccceeehhhhCCeEEEec--CcEEEEE
Confidence 455567776 667777753 5889999988755544444332 34455554 4666666554 4579999
Q ss_pred eCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 305 QRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 305 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+..++ +.+..-..|..++..+...-.+. .++.|..-+.+.+
T Consensus 854 e~t~~---~eLr~e~~~~~~~~aL~l~v~gd-------eI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 854 EWTTE---RELRIECNISNPIIALDLQVKGD-------EIAVGDLMRSITL 894 (1096)
T ss_pred Ecccc---ceehhhhcccCCeEEEEEEecCc-------EEEEeeccceEEE
Confidence 99886 44555566778888888888887 8888876665543
No 354
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.014 Score=45.96 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=158.0
Q ss_pred ccceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCCccceee
Q 038568 29 HMIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 29 ~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.+-+..+.+++++...+..+ -++|.|+ .+......+.. ....+.-.++..+.+....+..|.-+.+.|+.+.+....
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDI-S~P~sP~~~~~-lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~l 163 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDI-STPDSPTLIGF-LNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQL 163 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEec-cCCCCcceecc-ccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCcee
Confidence 34566777888999999988 9999999 54333222211 113355667777777766666666678889887765443
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhcc-ccccccE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVN-KAHEDAV 186 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v 186 (357)
..... .....-..++.+.++-..+..|+-+.+-|+.....-.-+. ......+
T Consensus 164 agrya---------------------------~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~ 216 (370)
T COG5276 164 AGRYA---------------------------LPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGT 216 (370)
T ss_pred eeeec---------------------------cCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCce
Confidence 32211 2223346777777888888899999999997644222221 1233367
Q ss_pred EEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 187 NAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 187 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
.++..+++.-+++.... -+.+-|..... ....... .....++.--.+.-.+++......+.-+.+-|+.+.
T Consensus 217 ~sv~vsdnr~y~vvy~e-gvlivd~s~~s-------sp~~~gs-yet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 217 YSVSVSDNRAYLVVYDE-GVLIVDVSGPS-------SPTVFGS-YETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred EEEEecCCeeEEEEccc-ceEEEecCCCC-------CceEeec-cccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 78888777644444444 45556655111 1111111 112222221123334667777777777888888766
Q ss_pred CceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEE
Q 038568 267 HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGS 346 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s 346 (357)
........+.........+...+.++..+..+ ...+-+....+ ......+....+.+.+.+-+.+ .+.+
T Consensus 288 ~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~~q-------~~y~ 356 (370)
T COG5276 288 PSPFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPS---MMDKRPGRPTIGQSCDVSVDTQ-------IIYS 356 (370)
T ss_pred CCCchhccccCCCccccceEEecCeeEeccCC-ceEEEeCCChh---hcccccCcceEeeecceEEEee-------EEEE
Confidence 55444333332333445566667766666665 45555655431 1112222222233344444444 6677
Q ss_pred cCCCCeEEecC
Q 038568 347 GSLNGEIKVWD 357 (357)
Q Consensus 347 ~~~dg~v~~wd 357 (357)
...++-+.+||
T Consensus 357 ~d~~~gl~i~~ 367 (370)
T COG5276 357 TDYNGGLSIIE 367 (370)
T ss_pred eecCCCEEEEE
Confidence 77777777775
No 355
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.018 Score=47.01 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=87.8
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhcc----ccccccEEEEEEecCCeEEEEeCC------------CeEEEEEcccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVN----KAHEDAVNAVVVSDNGVVYTGSAD------------GRIRVWERSVVDH 216 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~~ 216 (357)
..|+++. . -+.+++.+++..+..+. .......+.+...|+|.+..+... |.|+.+|..
T Consensus 78 g~Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---- 151 (307)
T COG3386 78 GRLIACE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---- 151 (307)
T ss_pred CeEEEEc-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----
Confidence 4444443 3 35666665544422221 112245677888899977666655 223333321
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCeEEEEeccc--CCce--eeeeeccCCccce--EEEeecC
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRWIVVWERER--DHRM--VFAEALWGHTGAL--LCLINVG 289 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~--~~~~--~~~~~~~~~~~~v--~~~~~~~ 289 (357)
.........+-..-+.|+||||++.|+.+.. .+.|.-|++.. +..- ..........+.. .++.-.+
T Consensus 152 -------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 152 -------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred -------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 2223333333455678999999988777765 47888887762 1100 0011111122222 3334444
Q ss_pred ceEEEecCCC-eEEEeeCCCCcceeeeeeecCCcCceEEEEEee
Q 038568 290 DLLASGSADR-TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAIS 332 (357)
Q Consensus 290 ~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 332 (357)
.+-+++..+| .|.+|+.. + +.+.........+++++|--
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CEEEecccCCceEEEECCC-C---cEEEEEECCCCCCccceEeC
Confidence 4443444443 89999988 5 44555555556788888865
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.024 Score=50.17 Aligned_cols=75 Identities=12% Similarity=0.100 Sum_probs=50.0
Q ss_pred cccceeEEEEecCCCEEEEEec-CCeEEEEecccCCcee---------eeeeccCCccceEEEeecCc--eEEEecCCCe
Q 038568 233 HRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMV---------FAEALWGHTGALLCLINVGD--LLASGSADRT 300 (357)
Q Consensus 233 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~ 300 (357)
-......++++|||+++++++. +++|.|+|+.+.+... ......--.++ +..+|+++ ...+-.-|..
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecce
Confidence 3455688999999998877665 8999999998755311 11111111222 33455655 6677778999
Q ss_pred EEEeeCCC
Q 038568 301 VRIWQRGK 308 (357)
Q Consensus 301 i~vw~~~~ 308 (357)
|..|++.+
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999876
No 357
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.011 Score=52.25 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=41.9
Q ss_pred eecCc-eEEEecCCCeEEEeeCCCCcc---------eeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 286 INVGD-LLASGSADRTVRIWQRGKENC---------YRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 286 ~~~~~-~l~~~~~dg~i~vw~~~~~~~---------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
+.+++ .++++..++++.|.|+.+.+. ...+.+...-.+| ...+|.+++. ...|--.|..|-.
T Consensus 329 SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~-------aytslf~dsqv~k 400 (635)
T PRK02888 329 SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGN-------AYTTLFLDSQIVK 400 (635)
T ss_pred CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCC-------EEEeEeecceeEE
Confidence 34444 555666699999999987531 1123333332333 4567888876 7888888999998
Q ss_pred cC
Q 038568 356 WD 357 (357)
Q Consensus 356 wd 357 (357)
||
T Consensus 401 wn 402 (635)
T PRK02888 401 WN 402 (635)
T ss_pred Ee
Confidence 86
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.66 E-value=0.021 Score=46.32 Aligned_cols=143 Identities=10% Similarity=0.233 Sum_probs=86.2
Q ss_pred CceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEec
Q 038568 83 TKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSW 160 (357)
Q Consensus 83 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 160 (357)
+.|+.|+.+| +.+++.........+ .+...|..+...+ +.+++-+
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i-------------------------------~~~~~I~ql~vl~~~~~llvLs- 54 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRI-------------------------------LKLSSITQLSVLPELNLLLVLS- 54 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeE-------------------------------eecceEEEEEEecccCEEEEEc-
Confidence 4488898888 899998333222222 2233489999888 5555554
Q ss_pred CCeEEEEEcCcchhhhhc-------------cccccccEEEEE--EecCC-eEEEEeCCCeEEEEEccccccccccccce
Q 038568 161 DRSFKIWNASNYKCLESV-------------NKAHEDAVNAVV--VSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~-------------~~~~~~~v~~~~--~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
|+.+.++++......... .......+...+ -...+ ..++......|.+|... ......
T Consensus 55 d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~------~~~~~f 128 (275)
T PF00780_consen 55 DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWN------DPRNSF 128 (275)
T ss_pred CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEE------CCcccc
Confidence 599999998765444311 012233444444 11222 44555556699999987 211122
Q ss_pred -eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc
Q 038568 225 -MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 225 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
....++. ....+..++|. ++.++.|..++ ..+.|+.++..
T Consensus 129 ~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 129 SKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred cceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 3344443 34778889998 45788777555 88899986654
No 359
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0019 Score=54.64 Aligned_cols=143 Identities=8% Similarity=0.131 Sum_probs=100.1
Q ss_pred eEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---------eEEeecCCeEEEEecCCccceeeeee
Q 038568 41 LLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---------IFTAHQDCKIRVWKITASRQHQLVST 110 (357)
Q Consensus 41 ~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------l~~~~~d~~i~vwd~~~~~~~~~~~~ 110 (357)
+|.++... .++=-|+ +.++.+.+..- +.. |+-+.+.|+. -+.|-.|..|.-||++-...- .+..
T Consensus 348 il~~~~~~~~l~klDI-E~GKIVeEWk~---~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDI-ERGKIVEEWKF---EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAV 421 (644)
T ss_pred EeeCCCCcCcceeeec-ccceeeeEeec---cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeee
Confidence 33444455 8888899 89999998885 444 7777888763 445667888999998733221 1111
Q ss_pred cCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEE
Q 038568 111 LPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAV 189 (357)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~ 189 (357)
.+. +.+ .......|.+-.. .+++.|+.+|.|++||- .+..-.+..++...+|..+
T Consensus 422 ~q~----------------------kqy-~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hV 477 (644)
T KOG2395|consen 422 VQS----------------------KQY-STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHV 477 (644)
T ss_pred eec----------------------ccc-ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeE
Confidence 000 000 2233456666666 99999999999999996 5555555448889999999
Q ss_pred EEecCCeEEEEeCCCeEEEEEccc
Q 038568 190 VVSDNGVVYTGSADGRIRVWERSV 213 (357)
Q Consensus 190 ~~~~~~~l~~~~~d~~i~i~d~~~ 213 (357)
..+.+|..+.|..+..+.+.+...
T Consensus 478 dvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 478 DVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred EeeccCcEEEEecccEEEEEEEec
Confidence 999999877777888999988764
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.59 E-value=0.027 Score=45.68 Aligned_cols=246 Identities=13% Similarity=0.122 Sum_probs=124.4
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDR 117 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 117 (357)
++.|+.|..+-+.+++. ........+. +...|..+...|+. ++..-.|+.+.++++..-...............
T Consensus 7 ~~~L~vGt~~Gl~~~~~-~~~~~~~~i~----~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDL-SDPSKPTRIL----KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCCEEEEEe-cCCccceeEe----ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccc
Confidence 78899997668888888 4434444443 44459999999875 333444699999998765433211100000000
Q ss_pred eeeeecCCCeEEEecccccccccccccEEEEE---Eec-CeEEEEecCCeEEEEEcCcc-----hhhhhccccccccEEE
Q 038568 118 LIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV---VKQ-GLMYSVSWDRSFKIWNASNY-----KCLESVNKAHEDAVNA 188 (357)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~-~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~ 188 (357)
. ...-......+..++ -.. ...+.......|.+|..... +....+ .....+.+
T Consensus 82 ~----------------~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~--~lp~~~~~ 143 (275)
T PF00780_consen 82 S----------------LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI--SLPDPPSS 143 (275)
T ss_pred c----------------ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--EcCCCcEE
Confidence 0 000001222333333 111 33334444558998887653 233444 45578889
Q ss_pred EEEecCCeEEEEeCCCeEEEEEccccccccccccceee--eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 189 VVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHML--VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 189 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
++|.++ .++.|.. ....+.|+.+.....-....... .........++..+..+ ++.+|++- |..-...|.. +
T Consensus 144 i~~~~~-~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~~-G 217 (275)
T PF00780_consen 144 IAFLGN-KICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNKN-G 217 (275)
T ss_pred EEEeCC-EEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcCC-C
Confidence 999844 5656554 45777888732211100000000 00001112233333433 44556543 3333333443 3
Q ss_pred CceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 267 HRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 267 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
+... ...+. =......+.+...+|++.+.++ |.||++.++ +.++.+.
T Consensus 218 ~~~r-~~~i~-W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~---~lvQ~i~ 264 (275)
T PF00780_consen 218 EPSR-KSTIQ-WSSAPQSVAYSSPYLIAFSSNS-IEVRSLETG---ELVQTIP 264 (275)
T ss_pred CcCc-ccEEE-cCCchhEEEEECCEEEEECCCE-EEEEECcCC---cEEEEEE
Confidence 3221 11111 1224556777777887777655 999999998 4455544
No 361
>PHA02713 hypothetical protein; Provisional
Probab=97.55 E-value=0.024 Score=50.84 Aligned_cols=65 Identities=5% Similarity=0.001 Sum_probs=43.0
Q ss_pred CCCEEEEEecC------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC--eEEEeeCCCC
Q 038568 245 DGSLLFSGGCD------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR--TVRIWQRGKE 309 (357)
Q Consensus 245 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg--~i~vw~~~~~ 309 (357)
++++.+.|+.+ ..+..||..+.........+.............+...++||.|| .+..||..+.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 46666777654 24678998872233344444444445555667777888999888 7888888876
No 362
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.00036 Score=52.27 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=68.9
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEe
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL 230 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 230 (357)
..++.|+.+|.|.+|+.+..-............|.++.-.-+. +..+++.+|.|+.|++. ..+.+...
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~----------p~k~~g~~ 140 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK----------PNKVLGYV 140 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc----------cCceeeee
Confidence 7789999999999999874333222212333344444333232 68889999999999987 44444444
Q ss_pred eccc-cceeEEEEecCCCEEEEE--ecCCeEEEEecccCC
Q 038568 231 VKHR-STVNALALNGDGSLLFSG--GCDRWIVVWERERDH 267 (357)
Q Consensus 231 ~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~ 267 (357)
..|. .++..+..+..+++++.+ +.|..++.|++....
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 4555 556666666666777777 777888888876443
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00048 Score=59.16 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=69.7
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEE-EEEEecCCe-EEEEeCCCeEEEEEccccccc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN-AVVVSDNGV-VYTGSADGRIRVWERSVVDHN 217 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~ 217 (357)
...+.-+.|+| .++|.+..+|.|.+..++ .+.+.++ ..++..++ +++|.|||. |++|-.||+|++.|+..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-p~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~---- 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-PIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK---- 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-cCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC----
Confidence 45678899999 999999999999999987 7888888 44555555 999999995 89999999999999982
Q ss_pred cccccceeeeeE-eeccccceeEEEEec
Q 038568 218 KERKSRHMLVTT-LVKHRSTVNALALNG 244 (357)
Q Consensus 218 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~ 244 (357)
...+.. ...-..+|.++.|.+
T Consensus 94 ------~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 ------GGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ------CCceeccccccccchheeeccc
Confidence 222221 222345677777763
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.054 Score=46.56 Aligned_cols=179 Identities=13% Similarity=0.103 Sum_probs=87.9
Q ss_pred ccEEEEEEec-CeEEEEecCCeEEEEEcCcch------hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccc
Q 038568 143 DAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK------CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 143 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 215 (357)
+.+.++.|.. ..|+....||.++++|+.... .+... .-....+....+..+|.++. ..++.+.+.+-- +
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~-~v~e~~i~~~~~~~~GivvL-t~~~~~~~v~n~--~ 156 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEE-KVLECRIFAIWFYKNGIVVL-TGNNRFYVVNNI--D 156 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhcccc-CcccccccccccCCCCEEEE-CCCCeEEEEeCc--c
Confidence 7899999999 888899999999999986322 11111 11112233333444564322 334454443321 1
Q ss_pred cc-cccccc--eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--
Q 038568 216 HN-KERKSR--HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD-- 290 (357)
Q Consensus 216 ~~-~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 290 (357)
.. ...... .........+........++.+....+....++.+.+.+-..... . ...+++..++.+|+
T Consensus 157 ~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i-~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 157 EPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------I-DSDGPIIKIAVSPNGK 229 (410)
T ss_pred ccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------c-cCCCCeEEEEECCCCC
Confidence 00 000000 000000000111100123444555555555666666554332211 1 12345666666554
Q ss_pred eEEEecCCCeEEEeeCCCCcceeeeeeecCC-cCceEEEEEeeCCC
Q 038568 291 LLASGSADRTVRIWQRGKENCYRCMAFLEGH-EKPVKSLVAISSSS 335 (357)
Q Consensus 291 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~ 335 (357)
++|.-..+|.+.+.+..-. +.+..+... ......+.|+-+..
T Consensus 230 ~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 230 FIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred EEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 8888888899888876543 223333322 34566777877653
No 365
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.012 Score=54.30 Aligned_cols=79 Identities=11% Similarity=0.257 Sum_probs=56.5
Q ss_pred cceeEEEEecceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEeecCCeEEEEecCCcccee
Q 038568 30 MIISCLAVHNSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQ 106 (357)
Q Consensus 30 ~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~ 106 (357)
..+.+.+.-+..++.|+.. .+-..|. ... +..+.......++|++++|+.++ ++.|-.+|.|.+||+..++..+
T Consensus 90 ~~v~s~a~~~~~ivi~Ts~ghvl~~d~-~~n--L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 90 AGVISSAIVVVPIVIGTSHGHVLLSDM-TGN--LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred cceeeeeeeeeeEEEEcCchhhhhhhh-hcc--cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 3444555557788888888 9998888 432 11121111267899999999988 7778889999999999988777
Q ss_pred eeeec
Q 038568 107 LVSTL 111 (357)
Q Consensus 107 ~~~~~ 111 (357)
.+...
T Consensus 167 ~i~e~ 171 (1206)
T KOG2079|consen 167 VITEH 171 (1206)
T ss_pred eeeec
Confidence 66543
No 366
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.41 E-value=0.033 Score=49.98 Aligned_cols=186 Identities=15% Similarity=0.236 Sum_probs=95.9
Q ss_pred EEEEEEec-CeEEEEecC------CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCe-----EEEEEc
Q 038568 145 VSDLVVKQ-GLMYSVSWD------RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGR-----IRVWER 211 (357)
Q Consensus 145 v~~~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~-----i~i~d~ 211 (357)
-.+++..+ ...++|+.| .++..||..+.+-...-.......-.+++.. +| ..++|+.||. +-.||.
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-DGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-CCEEEEEeccccccccccEEEecC
Confidence 34455555 677888888 3577888877653221101111111223322 44 5788888865 556665
Q ss_pred cccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCC------eEEEEecccCCceeeeeeccCCccceEEE
Q 038568 212 SVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR------WIVVWERERDHRMVFAEALWGHTGALLCL 285 (357)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~v~~~ 285 (357)
. ......+..+........... -+|++.++|+.++ .+..||..++.- .....+..-.......
T Consensus 404 ~--------~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g~a 472 (571)
T KOG4441|consen 404 V--------TNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTW-TLIAPMNTRRSGFGVA 472 (571)
T ss_pred C--------CCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCce-eecCCcccccccceEE
Confidence 4 112333322222112222222 2677888887554 577888876642 1222222222233345
Q ss_pred eecCceEEEecCCC-----eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCe
Q 038568 286 INVGDLLASGSADR-----TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGE 352 (357)
Q Consensus 286 ~~~~~~l~~~~~dg-----~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~ 352 (357)
..++.+.+.||.|+ +|..||..+.+ +..+.........+-...+ ++. ..+.||.||.
T Consensus 473 ~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g~~~~--~~~-------ly~vGG~~~~ 534 (571)
T KOG4441|consen 473 VLNGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVGVVVL--GGK-------LYAVGGFDGN 534 (571)
T ss_pred EECCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCccccccccEEEE--CCE-------EEEEecccCc
Confidence 56666888888776 37778888763 4444333333222222222 222 7788888875
No 367
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.25 E-value=0.079 Score=43.29 Aligned_cols=261 Identities=11% Similarity=0.143 Sum_probs=132.2
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEee----------cCCeEEEEecCCccceeeeeecCcccc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTAH----------QDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~~----------~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
.+.++|. ++++.+..+.. +..-.+..+|++ +++++ ..-.|.+||..+-.....+...+..+.
T Consensus 18 rv~viD~-d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 18 RVYVIDA-DSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEET-TTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred eEEEEEC-CCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 7899998 88777666654 233346677876 54432 345699999988765554433221000
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEE--EecCCeEEEEEcCcchhhhhccccccccEEEEEEe
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYS--VSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 192 (357)
.. .- ....++++. ++++. .+-...|.|-|+...+.+..+ ...+ +..+--.
T Consensus 92 ~~---------------------~~--~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei--~~PG-C~~iyP~ 145 (342)
T PF06433_consen 92 QV---------------------VP--YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI--DTPG-CWLIYPS 145 (342)
T ss_dssp -B---------------------S----GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE--EGTS-EEEEEEE
T ss_pred ee---------------------cc--cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee--cCCC-EEEEEec
Confidence 00 00 001112222 22222 222335666666666666555 2222 2222223
Q ss_pred cCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccce-eEEEEecCCCEEEEEecCCeEEEEecccCCceee
Q 038568 193 DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTV-NALALNGDGSLLFSGGCDRWIVVWERERDHRMVF 271 (357)
Q Consensus 193 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 271 (357)
++..|.+-|.||.+....+...... ..+....+.....++ ..-++...+..++--+.+|.|+--|+...... .
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~-----~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~ 219 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKE-----AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-F 219 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSE-----EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-E
T ss_pred CCCceEEEecCCceEEEEECCCCCE-----eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-c
Confidence 3446888999999999888732111 111111222222333 23345555555555778999999888755421 2
Q ss_pred eeeccC------------CccceEEEeecCceEEE---ecCCC-------eEEEeeCCCCcceeeeeeecCCcCceEEEE
Q 038568 272 AEALWG------------HTGALLCLINVGDLLAS---GSADR-------TVRIWQRGKENCYRCMAFLEGHEKPVKSLV 329 (357)
Q Consensus 272 ~~~~~~------------~~~~v~~~~~~~~~l~~---~~~dg-------~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~ 329 (357)
.....- ..-.+.++....+.|++ .+.+| .|.++|+.++ +.+.++.. ..++.+|.
T Consensus 220 ~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---krv~Ri~l-~~~~~Si~ 295 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---KRVARIPL-EHPIDSIA 295 (342)
T ss_dssp EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT---EEEEEEEE-EEEESEEE
T ss_pred cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC---eEEEEEeC-CCccceEE
Confidence 111110 01122333322222222 12222 4778888887 55555543 34688999
Q ss_pred EeeCCCCCCCCeEEEEE-cCCCCeEEecC
Q 038568 330 AISSSSSASNGIVSIGS-GSLNGEIKVWD 357 (357)
Q Consensus 330 ~~~~~~~~~~~~~~l~s-~~~dg~v~~wd 357 (357)
.+.+.+ .+|++ ...++.+.+||
T Consensus 296 Vsqd~~------P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 296 VSQDDK------PLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EESSSS-------EEEEEETTTTEEEEEE
T ss_pred EccCCC------cEEEEEcCCCCeEEEEe
Confidence 998876 26654 45688999886
No 368
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.24 E-value=0.078 Score=43.10 Aligned_cols=278 Identities=10% Similarity=0.047 Sum_probs=124.8
Q ss_pred CccceeEEEEe--cceEEEeeCCceEEEeccCCccccceeccccC--CCCceEEEEEecCceEEeecCCeEEEEecCCcc
Q 038568 28 HHMIISCLAVH--NSLLYAASLNEINVFDLISDYSHVDTFSNDLS--SSGSVKSITFHITKIFTAHQDCKIRVWKITASR 103 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~~~ 103 (357)
-...+.+|.|. ..-+++|....| +...+.++.-........ ..-...++.|..+....++..+. .+--.+.++
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~ 91 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGL-LLHTTDGGK 91 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTE-EEEESSTTS
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCce-EEEecCCCC
Confidence 35689999998 455555554432 333144443333321100 12346788887665333444553 344445555
Q ss_pred ceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE-EecCeEEEEecCCeEEEEEcCcchhhhhccccc
Q 038568 104 QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV-VKQGLMYSVSWDRSFKIWNASNYKCLESVNKAH 182 (357)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (357)
....+.... .-......+. ..+.....++..|.|..= ...++.-..+....
T Consensus 92 tW~~v~l~~---------------------------~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~ 143 (302)
T PF14870_consen 92 TWERVPLSS---------------------------KLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSET 143 (302)
T ss_dssp S-EE----T---------------------------T-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S-
T ss_pred CcEEeecCC---------------------------CCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCC
Confidence 444433211 0111122222 233444444444544332 12233222222344
Q ss_pred cccEEEEEEecCCeEEEEeCCCeE-EEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 183 EDAVNAVVVSDNGVVYTGSADGRI-RVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
...+..+.-+++|.+++.+..|.+ .-||.- .....+. .......|..|.|.|++.+.+++ ..|.|+.=
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--------~~~w~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s 212 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPG--------QTTWQPH--NRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFS 212 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT---------SS-EEE--E--SSS-EEEEEE-TTS-EEEEE-TTTEEEEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCC--------CccceEE--ccCccceehhceecCCCCEEEEe-CCcEEEEc
Confidence 567888888899965555555554 567643 1122222 22345789999999998766654 88888887
Q ss_pred e-cccCCceee-eeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCC
Q 038568 262 E-RERDHRMVF-AEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSAS 338 (357)
Q Consensus 262 d-~~~~~~~~~-~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 338 (357)
+ ....+.... ..........+..++|.++ .+.+++..|.+ +.....++.++.......-...+..+.|.+..+
T Consensus 213 ~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~--- 288 (302)
T PF14870_consen 213 DDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK--- 288 (302)
T ss_dssp E-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTE---
T ss_pred cCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCc---
Confidence 7 222222111 1111123334788888765 44445555543 556667766666555445556688999987764
Q ss_pred CCeEEEEEcCCCCeEEec
Q 038568 339 NGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 339 ~~~~~l~s~~~dg~v~~w 356 (357)
-++ -+.+|.|.-|
T Consensus 289 ----gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 289 ----GFV-LGQDGVLLRY 301 (302)
T ss_dssp ----EEE-E-STTEEEEE
T ss_pred ----eEE-ECCCcEEEEe
Confidence 444 4568888765
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.24 E-value=0.081 Score=43.23 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=80.4
Q ss_pred CeEEEEecCCeEEEEEcC-cchhhhhcc---cccccc-EEEEEEec-CCeEEEEeCCCeEEEEEccccccccccccceee
Q 038568 153 GLMYSVSWDRSFKIWNAS-NYKCLESVN---KAHEDA-VNAVVVSD-NGVVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~---~~~~~~-v~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
..+.+-+.||.+.-..+. .|+...+.. .....+ +..-++.. .+.++-.+.+|.|+-.|+.... .+.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~--------~~~ 219 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS--------AKF 219 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS--------EEE
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc--------ccc
Confidence 678888899999988887 344332110 111222 22233333 3456667889999998886211 111
Q ss_pred eeEeecc----------ccceeEEEEecCCCEEEEEec--------CC--eEEEEecccCCceeeeeeccCCccceEEEe
Q 038568 227 VTTLVKH----------RSTVNALALNGDGSLLFSGGC--------DR--WIVVWERERDHRMVFAEALWGHTGALLCLI 286 (357)
Q Consensus 227 ~~~~~~~----------~~~v~~~~~~~~~~~l~~~~~--------dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 286 (357)
...+..- .+.-.-+++++..+.|++--. |+ .|-++|+.+.+++..+.. ..++.++.
T Consensus 220 ~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~ 295 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIA 295 (342)
T ss_dssp EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEE
T ss_pred cCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEE
Confidence 1111110 112334778876655554322 11 477888888876543332 22354555
Q ss_pred ecCc---eEE-EecCCCeEEEeeCCCCcceeeee
Q 038568 287 NVGD---LLA-SGSADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 287 ~~~~---~l~-~~~~dg~i~vw~~~~~~~~~~~~ 316 (357)
.+.+ +|+ ....++.+.+||..+++..+.+.
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 5443 554 45678999999999985444333
No 370
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.18 E-value=0.11 Score=43.74 Aligned_cols=109 Identities=10% Similarity=0.138 Sum_probs=55.8
Q ss_pred cCCeEEEEEcCcchhhhhccccccc-cEEEEEEecC--C-e-EEEEeCCCeEEEEEccccccccccccceeeeeEeec--
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHED-AVNAVVVSDN--G-V-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK-- 232 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~--~-~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-- 232 (357)
...++.+||+.+.+.++++..+... ....+.|..+ . + ++.+.-..+|-.|--.. .+.-..+.+..+..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-----~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-----DGEWAAEKVIDIPAKK 294 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-----TTEEEEEEEEEE--EE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-----CCCeeeeEEEECCCcc
Confidence 3568999999999999988444333 4557777643 3 3 55444455555443310 11111111111111
Q ss_pred ---------------cccceeEEEEecCCCEEEEEec-CCeEEEEecccCCceeeee
Q 038568 233 ---------------HRSTVNALALNGDGSLLFSGGC-DRWIVVWERERDHRMVFAE 273 (357)
Q Consensus 233 ---------------~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~ 273 (357)
-..-|+.|..|.|.++|..++. +|.|+.||+.....+.+..
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g 351 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG 351 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe
Confidence 1234789999999998887764 9999999999876655543
No 371
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.14 E-value=0.12 Score=43.19 Aligned_cols=175 Identities=13% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCC-----eEEEEEccccccccccccceeeeeEeeccc
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADG-----RIRVWERSVVDHNKERKSRHMLVTTLVKHR 234 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 234 (357)
...|.-.|+.+++....+ .....+..+.++|.. .+++=|..| .-|+|-++.. .....++.... ..
T Consensus 167 ~~~i~~idl~tG~~~~v~--~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d------g~~~~~v~~~~-~~ 237 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVF--EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD------GSNVKKVHRRM-EG 237 (386)
T ss_dssp -EEEEEEETTT--EEEEE--EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT------S---EESS----TT
T ss_pred CceEEEEECCCCceeEEE--ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC------CCcceeeecCC-CC
Confidence 345666788877654444 456677889999976 444444333 2377877622 11222222221 13
Q ss_pred cceeEEEEecCCCEEEEEe-----cCCeEEEEecccCCceeeeeeccCCccceEEEeecC--ceEEEecCC---------
Q 038568 235 STVNALALNGDGSLLFSGG-----CDRWIVVWERERDHRMVFAEALWGHTGALLCLINVG--DLLASGSAD--------- 298 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d--------- 298 (357)
..+..=-|.|||..|.--+ .+..|.-+|+.+++.... ... .+...+..++ ++++-=+.|
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~-~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~ 312 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL-MEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAG 312 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE-EEE-----SEEEEEE-TTSSEEEEEE-----------
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE-EeC----CceeeeEEcCCCCEEEecCCCCCccccccc
Confidence 3455556888888665422 244577778877654322 111 1122222223 343322222
Q ss_pred -------CeEEEeeCCCCcceeeeee-------ecCCcC-ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 299 -------RTVRIWQRGKENCYRCMAF-------LEGHEK-PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 299 -------g~i~vw~~~~~~~~~~~~~-------~~~h~~-~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
-.|++++++.++.. .+.. +.++.. .=-...|+||++ .+|.++...|...||
T Consensus 313 ~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk------~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 313 GYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGK------WVLFRSDMEGPPAVY 378 (386)
T ss_dssp --------EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSS------EEEEEE-TTSS-EEE
T ss_pred cceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCC------EEEEECCCCCCccEE
Confidence 25677888765322 1222 222221 123578999998 577788888876665
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0019 Score=59.22 Aligned_cols=99 Identities=17% Similarity=0.313 Sum_probs=68.0
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeec
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEAL 275 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 275 (357)
.++.|+..|.+...|+. . +..+...-..-.++|++++|+.+|+.++.|-.+|.|.+||+..++....+...
T Consensus 101 ~ivi~Ts~ghvl~~d~~------~---nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMT------G---NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred eEEEEcCchhhhhhhhh------c---ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 58889999999999986 1 11222233344689999999999999999999999999999988755544433
Q ss_pred cCCccceEEEeec-Cc-eEEEecCCCeEEEee
Q 038568 276 WGHTGALLCLINV-GD-LLASGSADRTVRIWQ 305 (357)
Q Consensus 276 ~~~~~~v~~~~~~-~~-~l~~~~~dg~i~vw~ 305 (357)
......+..+.+. .+ .++++...|. +|.
T Consensus 172 ~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 172 GAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 2222233333333 33 6788877775 454
No 373
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.10 E-value=0.0024 Score=35.28 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=28.3
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
...|..++|+|...+||.++.+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.016 Score=49.30 Aligned_cols=124 Identities=13% Similarity=0.204 Sum_probs=85.9
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-------EEEEEecCCeEEEEecccCCce
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-------LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
|..+.....++-.|++ .++.+....-+.. |+-+.+.|+.+ .-+.|-.|+.|.-||++-...-
T Consensus 349 l~~~~~~~~l~klDIE----------~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIE----------RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred eeCCCCcCcceeeecc----------cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 5666667778888887 5677777776655 77777777543 2345667888999999843321
Q ss_pred eeeeeccCC----ccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 270 VFAEALWGH----TGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 270 ~~~~~~~~~----~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.+....+| .....|++-.++ +|++|+.+|.||+||- .+ .+....+.+-..+|..+..+.+|+
T Consensus 418 -kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~--~~AKTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 418 -KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IG--RRAKTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred -eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hh--hhhhhcccccCCceeeEEeeccCc
Confidence 11111222 233456666666 9999999999999997 33 234455778889999999999998
No 375
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.10 E-value=0.19 Score=44.87 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=46.2
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCC-CCce-------EEEEEecCceEEeecCCeEEEEecCCccceeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSS-SGSV-------KSITFHITKIFTAHQDCKIRVWKITASRQHQLV 108 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~-~~~v-------~~l~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 108 (357)
+..+++++.+ .|+-.|. .+++.+-.+...... .... ..+++..+.++.++.|+.+.-.|..+++..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa-~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA-KTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEEC-CCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 6677777777 9999999 888887766531100 0010 123444556888888999999999998865443
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.05 E-value=0.11 Score=41.19 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=105.0
Q ss_pred cccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEE-EeCCCeEEEEEcccccc
Q 038568 140 EHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYT-GSADGRIRVWERSVVDH 216 (357)
Q Consensus 140 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~ 216 (357)
+-...+.++.|+| +.|++......-.++=...|+.+.+++...-.....+.+..++.++. --.++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 4455699999999 78888888888778877788888887544444556778887776444 44577888877652211
Q ss_pred ccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCc-------cceEEEeecC
Q 038568 217 NKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT-------GALLCLINVG 289 (357)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~ 289 (357)
........-.+............++|+|..+.|+.+-+-+-+.||................+. ..+.++.|++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 111111111122222225567889999988888888887778888776433211121111121 2345566664
Q ss_pred c---eEEEecCCCeEEEeeCCC
Q 038568 290 D---LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 290 ~---~l~~~~~dg~i~vw~~~~ 308 (357)
. +|+-+.+++.+.-.|...
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCcEEEEecCCceEEEEecCC
Confidence 3 777777788777777654
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.02 E-value=0.24 Score=44.65 Aligned_cols=226 Identities=15% Similarity=0.224 Sum_probs=121.9
Q ss_pred cceEEEeeCC-------ceEEEeccCCc--cccceeccccCCCCceEEEEEecCc-eEEeecC------CeEEEEecCCc
Q 038568 39 NSLLYAASLN-------EINVFDLISDY--SHVDTFSNDLSSSGSVKSITFHITK-IFTAHQD------CKIRVWKITAS 102 (357)
Q Consensus 39 ~~~l~t~~~d-------~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d------~~i~vwd~~~~ 102 (357)
+.+++.||.+ .+..+|. .+. .....+. ....-.+++..++. .++||.| .++..||....
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~-~~~~w~~~a~m~----~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDP-KTNEWSSLAPMP----SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecC-CcCcEeecCCCC----cccccccEEEECCEEEEEccccCCCcccceEEEecCCCC
Confidence 5556666522 6778887 543 2222332 44455677777777 7888888 34677887776
Q ss_pred cceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCe-----EEEEEcCcchhhhh
Q 038568 103 RQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRS-----FKIWNASNYKCLES 177 (357)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~ 177 (357)
+... +.... ................+.|+.||. +-.||..+.+--..
T Consensus 360 ~W~~-~a~M~---------------------------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 360 QWTP-VAPMN---------------------------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred ceec-cCCcc---------------------------CccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 6433 22211 111222222333367788888864 66777766442221
Q ss_pred ccccccccEEEEEEecCCe-EEEEeCCC------eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 178 VNKAHEDAVNAVVVSDNGV-VYTGSADG------RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 178 ~~~~~~~~v~~~~~~~~~~-l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
-.......-.+++ .-+|+ .++|+.++ ++..||.. ......+..+........ ++. -++.+.+
T Consensus 412 a~m~~~r~~~gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~--------t~~W~~~~~M~~~R~~~g-~a~-~~~~iYv 480 (571)
T KOG4441|consen 412 APMLTRRSGHGVA-VLGGKLYIIGGGDGSSNCLNSVECYDPE--------TNTWTLIAPMNTRRSGFG-VAV-LNGKIYV 480 (571)
T ss_pred CCCCcceeeeEEE-EECCEEEEEcCcCCCccccceEEEEcCC--------CCceeecCCcccccccce-EEE-ECCEEEE
Confidence 1011111111222 23454 66676443 46677765 123333333332222222 222 2567888
Q ss_pred EEecCCe-----EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC-----eEEEeeCCCC
Q 038568 251 SGGCDRW-----IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR-----TVRIWQRGKE 309 (357)
Q Consensus 251 ~~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vw~~~~~ 309 (357)
.|+.|+. |..||..+.+-. ...........+-.....+...++|+.|| +|..||..+.
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~-~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWT-MVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ECCccCCCccceEEEEcCCCCcee-EcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 8887763 777888866432 33334444455555667777888888875 5777777765
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.17 Score=41.42 Aligned_cols=117 Identities=10% Similarity=0.095 Sum_probs=67.4
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCC-eEE-EEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEE
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVY-TGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA 241 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 241 (357)
|+-+|. .+..+..+ ..+-..-+.|+|+||+ .|. +=+..+.|.-|++........ ............+..-.++
T Consensus 145 lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~---~~~~~~~~~~~~G~PDG~~ 219 (307)
T COG3386 145 LYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIG---GRRGFVDFDEEPGLPDGMA 219 (307)
T ss_pred EEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccC---CcceEEEccCCCCCCCceE
Confidence 444443 34444333 3445566789999999 344 444458888887752111000 0111222223456667788
Q ss_pred EecCCCEEEEEecCC-eEEEEecccCCceeeeeeccCCccceEEEeecC
Q 038568 242 LNGDGSLLFSGGCDR-WIVVWERERDHRMVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 242 ~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 289 (357)
...+|.+.+++..+| .|.+|+.+ ++....+.. ....+.+++|-+
T Consensus 220 vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~FgG 264 (307)
T COG3386 220 VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPAFGG 264 (307)
T ss_pred EeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccceEeC
Confidence 888998776555554 89999998 664433332 335567777766
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.91 E-value=0.17 Score=41.19 Aligned_cols=155 Identities=10% Similarity=0.113 Sum_probs=74.9
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
...+..+...+ .++++++......-||.-.. .-..........|..|.|.|++.|......|.|++=+... .
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~-----~ 217 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-TWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD-----D 217 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-S-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT-----E
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCc-cceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC-----C
Confidence 46677777777 55555554444556774321 1222223456889999999999766666899998877220 0
Q ss_pred cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec-CceEEEecCC
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV-GDLLASGSAD 298 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 298 (357)
...-.+.........-.+..++|.+++...++|+ .|.+ +...+.++..........-......+.|. ++.-.+-+.+
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-ST
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCC
Confidence 0101111111222233478899998877776665 4433 44555566544443333334456666664 4566666778
Q ss_pred CeEEEe
Q 038568 299 RTVRIW 304 (357)
Q Consensus 299 g~i~vw 304 (357)
|.|--|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877655
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.90 E-value=0.12 Score=39.43 Aligned_cols=136 Identities=13% Similarity=0.107 Sum_probs=77.4
Q ss_pred cccEEEEEEecCCeEEEEeCC----------CeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE-E
Q 038568 183 EDAVNAVVVSDNGVVYTGSAD----------GRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF-S 251 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 251 (357)
....+.-..+|+|++..|... |.++.|-.. ..+..+...-.--+.++|+.+.+.+. +
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~------------h~v~~i~~~v~IsNgl~Wd~d~K~fY~i 175 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG------------HQVELIWNCVGISNGLAWDSDAKKFYYI 175 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC------------CCceeeehhccCCccccccccCcEEEEE
Confidence 445666677899976666432 334444322 01111111122235788988776554 4
Q ss_pred EecCCeEEEEe--cccCCce-----eeeeecc--CCcc-ceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCC
Q 038568 252 GGCDRWIVVWE--RERDHRM-----VFAEALW--GHTG-ALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGH 321 (357)
Q Consensus 252 ~~~dg~i~vwd--~~~~~~~-----~~~~~~~--~~~~-~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h 321 (357)
-+.+-+|.-|| ..++... .-++... .+.. .=+++.-++++.++.-..++|...|..++ +.+.++.-.
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG---K~L~eiklP 252 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG---KILLEIKLP 252 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC---cEEEEEEcC
Confidence 45566787777 4443211 1111111 1111 11445556667788888899999999998 556666666
Q ss_pred cCceEEEEEeeC
Q 038568 322 EKPVKSLVAISS 333 (357)
Q Consensus 322 ~~~v~~~~~~~~ 333 (357)
...|++++|--.
T Consensus 253 t~qitsccFgGk 264 (310)
T KOG4499|consen 253 TPQITSCCFGGK 264 (310)
T ss_pred CCceEEEEecCC
Confidence 888999999643
No 381
>PRK13684 Ycf48-like protein; Provisional
Probab=96.89 E-value=0.2 Score=41.81 Aligned_cols=157 Identities=11% Similarity=0.007 Sum_probs=88.7
Q ss_pred cccccEEEEEEecCCeEEEEeCCCeEEEE-EccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEE
Q 038568 181 AHEDAVNAVVVSDNGVVYTGSADGRIRVW-ERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
.....+..+.+.|++.++..+..|.+..- |-. ....... ...-...++.+.+.++++.++++ ..|.++
T Consensus 170 ~~~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g--------g~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~ 238 (334)
T PRK13684 170 DAAGVVRNLRRSPDGKYVAVSSRGNFYSTWEPG--------QTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIR 238 (334)
T ss_pred CCcceEEEEEECCCCeEEEEeCCceEEEEcCCC--------CCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEE
Confidence 33567889999999876666667766532 211 1112222 22345678899999998877665 567665
Q ss_pred EEecccCCceeeeeeccC-CccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWG-HTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 337 (357)
+=..+.+........... ....+..+.+.++ .++.++.+|.+. .....++.++.+.....-......+.|..+..
T Consensus 239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~-- 315 (334)
T PRK13684 239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK-- 315 (334)
T ss_pred EccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCc--
Confidence 323444443222211101 1234566677655 566666778665 45555555554432222234678888887765
Q ss_pred CCCeEEEEEcCCCCeEEecC
Q 038568 338 SNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~~wd 357 (357)
.++ .+..|.|.-|+
T Consensus 316 -----~~~-~G~~G~il~~~ 329 (334)
T PRK13684 316 -----GFV-LGQRGVLLRYV 329 (334)
T ss_pred -----eEE-ECCCceEEEec
Confidence 555 45678876653
No 382
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.88 E-value=0.18 Score=43.50 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=93.7
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc--eEEe---ecC-CeEEEEecCCccceeeeeecCccccceeeee
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK--IFTA---HQD-CKIRVWKITASRQHQLVSTLPTVKDRLIRSV 122 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--l~~~---~~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
.+.+=|. + +.....+.. ....+..-+|+|++ ++-. ... ..+.++++++++.......
T Consensus 174 ~l~~~D~-d-g~~~~~l~~---~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~------------ 236 (425)
T COG0823 174 ELALGDY-D-GYNQQKLTD---SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF------------ 236 (425)
T ss_pred eEEEEcc-C-CcceeEecc---cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc------------
Confidence 3444443 2 444444443 45566777888876 2211 122 4588889888765444331
Q ss_pred cCCCeEEEecccccccccccccEEEEEEec---CeEEEEecCCe--EEEEEcCcchhhhhccccccccEEEEEEecCCe-
Q 038568 123 LPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ---GLMYSVSWDRS--FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV- 196 (357)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 196 (357)
.+.-..-+|+| ..+++...||. |.+.|+.... +..+ ....+.-..=.|+|+|.
T Consensus 237 -------------------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~L-t~~~gi~~~Ps~spdG~~ 295 (425)
T COG0823 237 -------------------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRL-TNGFGINTSPSWSPDGSK 295 (425)
T ss_pred -------------------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceec-ccCCccccCccCCCCCCE
Confidence 12233446677 56667777776 5555766555 3334 22222223567899993
Q ss_pred -EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec-CCe--EEEEecccCC
Q 038568 197 -VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC-DRW--IVVWERERDH 267 (357)
Q Consensus 197 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~ 267 (357)
.++.+..|.-.||-... .......+......-..-.|+|||++++..+. +|. |.+.|+.++.
T Consensus 296 ivf~Sdr~G~p~I~~~~~---------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 296 IVFTSDRGGRPQIYLYDL---------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEeCCCCCcceEEECC---------CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 55666677666665441 11111222222222226778999998887764 344 6666665554
No 383
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.15 Score=43.96 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred CeEEEEEcCcchhhhhccccccccEEEEEEecCCe--EEEEeCCCeEEEE--EccccccccccccceeeeeEeeccccce
Q 038568 162 RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVW--ERSVVDHNKERKSRHMLVTTLVKHRSTV 237 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~v 237 (357)
..+.++|+++++..... .....-..-.|+|||. +++...||...+| |+. ... ...+....+.-
T Consensus 218 ~~i~~~~l~~g~~~~i~--~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~------~~~-----~~~Lt~~~gi~ 284 (425)
T COG0823 218 PRIYYLDLNTGKRPVIL--NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD------GKN-----LPRLTNGFGIN 284 (425)
T ss_pred ceEEEEeccCCccceee--ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC------CCc-----ceecccCCccc
Confidence 46999999988765554 2344445568999993 6667777765554 554 111 22232222333
Q ss_pred eEEEEecCCCEEEEEec-CCe--EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecC-CCe--EEEeeCCCCc
Q 038568 238 NALALNGDGSLLFSGGC-DRW--IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSA-DRT--VRIWQRGKEN 310 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~-dg~--i~vw~~~~~~ 310 (357)
..=.|+|||+.++-.+. .|. |.+++++.... ...+..+........+.++++|+..+. +|. |.+.|+.++.
T Consensus 285 ~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 285 TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 36678999997776554 454 56666665443 122222222233444555565555443 344 6666666653
No 384
>PHA03098 kelch-like protein; Provisional
Probab=96.70 E-value=0.44 Score=42.96 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=38.7
Q ss_pred CCCEEEEEecC--------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC-----CeEEEeeCCCCcc
Q 038568 245 DGSLLFSGGCD--------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD-----RTVRIWQRGKENC 311 (357)
Q Consensus 245 ~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~ 311 (357)
+++.++.|+.+ ..+.+||..+.+-. ....+.........+...+..++.|+.+ +.+.+||..+. .
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~-~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT-ELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN-T 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCcee-eCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC-E
Confidence 55666666643 23888998765421 2221111112223334556666777654 47888988875 3
Q ss_pred eeeeeeec
Q 038568 312 YRCMAFLE 319 (357)
Q Consensus 312 ~~~~~~~~ 319 (357)
+..+..+.
T Consensus 515 W~~~~~~p 522 (534)
T PHA03098 515 WTLFCKFP 522 (534)
T ss_pred EEecCCCc
Confidence 44444333
No 385
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.63 E-value=0.00022 Score=63.77 Aligned_cols=158 Identities=14% Similarity=0.115 Sum_probs=90.0
Q ss_pred ccccccEEEEEEec---CeEEEEecCCeEEEEEcCc--chhhhhc----cccccccEEEEEEec---CC-eEEEEeCCCe
Q 038568 139 LEHWDAVSDLVVKQ---GLMYSVSWDRSFKIWNASN--YKCLESV----NKAHEDAVNAVVVSD---NG-VVYTGSADGR 205 (357)
Q Consensus 139 ~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~--~~~~~~~----~~~~~~~v~~~~~~~---~~-~l~~~~~d~~ 205 (357)
.+..+.+..+.|.. ..+. -.-|.+.+||+.. |+....+ .......+.-+.|.| +. ++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 46677888888866 2222 3346789998763 3333222 123334445566654 33 5777778888
Q ss_pred EEEEEccccccccccccceeeeeEeeccccceeEEE-----------EecCCCEEEEEecCCeEEEEecccCC--ceeee
Q 038568 206 IRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALA-----------LNGDGSLLFSGGCDRWIVVWERERDH--RMVFA 272 (357)
Q Consensus 206 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~ 272 (357)
+++..+... ....+..|...+..++ .+|||..++.++.||.++.|.+.-.. ...+.
T Consensus 207 i~lL~~~ra-----------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rcl 275 (1283)
T KOG1916|consen 207 IRLLNINRA-----------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCL 275 (1283)
T ss_pred eeEeeechH-----------HHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhh
Confidence 888776511 1122334555444333 58999999999999999888764211 11123
Q ss_pred eeccCCc-cceEEEeecCc-----------eEEEec-CCCeEEEeeCCCC
Q 038568 273 EALWGHT-GALLCLINVGD-----------LLASGS-ADRTVRIWQRGKE 309 (357)
Q Consensus 273 ~~~~~~~-~~v~~~~~~~~-----------~l~~~~-~dg~i~vw~~~~~ 309 (357)
.....|. .+-.|.-++.. ++++++ .+.-+++|.-..-
T Consensus 276 hewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 276 HEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred hccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 3344454 33344434321 344444 4567888987653
No 386
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.38 Score=41.15 Aligned_cols=175 Identities=12% Similarity=0.128 Sum_probs=103.4
Q ss_pred EEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeC---CCeEEEEEcccccccc
Q 038568 146 SDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA---DGRIRVWERSVVDHNK 218 (357)
Q Consensus 146 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~ 218 (357)
..++.++ +..+....++.|.+.|..+.+....... ......+++++++ .+.++.. ++.+.+.|..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~------ 148 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA------ 148 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--ccCCceEEECCCCCEEEEEecccCCceEEEEeCC------
Confidence 3455555 3555555678999999888777777632 2366788999988 4444433 6888888876
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecccCCcee-eee-eccCCc-cceEEEeecCceEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG-CDRWIVVWERERDHRMV-FAE-ALWGHT-GALLCLINVGDLLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~-~~~-~~~~~~-~~v~~~~~~~~~l~~ 294 (357)
..........-..+ ..++++|+|..++... .++.|.+.|........ ... ...... .....+..++..+..
T Consensus 149 ----t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV 223 (381)
T COG3391 149 ----TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYV 223 (381)
T ss_pred ----CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEE
Confidence 33333333333344 8899999999666655 78899999977654321 000 011111 123445555553333
Q ss_pred ec-C--CCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 295 GS-A--DRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 295 ~~-~--dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
.. . ++.+...|..++........ .+-. ....+...|++.
T Consensus 224 ~~~~~~~~~v~~id~~~~~v~~~~~~-~~~~-~~~~v~~~p~g~ 265 (381)
T COG3391 224 ANDGSGSNNVLKIDTATGNVTATDLP-VGSG-APRGVAVDPAGK 265 (381)
T ss_pred EeccCCCceEEEEeCCCceEEEeccc-cccC-CCCceeECCCCC
Confidence 32 2 26888888887632221111 1111 355678888887
No 387
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.38 Score=41.11 Aligned_cols=216 Identities=12% Similarity=0.105 Sum_probs=125.4
Q ss_pred eEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEe
Q 038568 75 VKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVK 151 (357)
Q Consensus 75 v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 151 (357)
-..++.++.+ +++...++.|.+.|..+.+....... +. .-..++++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----------------------------G~--~P~~~~~~ 124 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----------------------------GL--GPVGLAVD 124 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----------------------------cc--CCceEEEC
Confidence 3456666654 55566678899999666554433322 11 44567777
Q ss_pred c--CeEEEEec---CCeEEEEEcCcchhhhhccccccccEEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccce
Q 038568 152 Q--GLMYSVSW---DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 152 ~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 224 (357)
+ +.+..+.. ++++.+.|..+.+.+... .....+ ..+++.|++. +++-..++.|.++|... .
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~-~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~----------~ 192 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATI-PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSG----------N 192 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEE-ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCC----------c
Confidence 7 45555544 689999999888887775 333334 8899999994 44445789999999761 1
Q ss_pred eeee-E---eeccccceeEEEEecCCCEEEEEecC---CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEe-c
Q 038568 225 MLVT-T---LVKHRSTVNALALNGDGSLLFSGGCD---RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASG-S 296 (357)
Q Consensus 225 ~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~-~ 296 (357)
.... . ...-......+.++|++.++.+.... +.+...|..++...........-...-..+.+.+..+.+. +
T Consensus 193 ~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 193 SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS 272 (381)
T ss_pred ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec
Confidence 1111 0 11122334678999999976665544 5888988887654322111111111223445555555544 3
Q ss_pred CCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 297 ADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 297 ~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
..+.+.+-|..+............-...+..+++.+.
T Consensus 273 ~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 273 QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 4578888888875322222222222233455555544
No 388
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.071 Score=49.97 Aligned_cols=125 Identities=13% Similarity=-0.025 Sum_probs=78.6
Q ss_pred EEEEecCCeEEEEEcCcchhhhh-----c-----cccccccEEEEEEecCC--eEEEEeCCCeEEEEEcccccccccccc
Q 038568 155 MYSVSWDRSFKIWNASNYKCLES-----V-----NKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 155 l~~~~~dg~i~iwd~~~~~~~~~-----~-----~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~ 222 (357)
++..+.+-.|..||+++...-.. + .........++.|+|.- ..++...|+.|++..+..
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~--------- 187 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQ--------- 187 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhh---------
Confidence 33444455789999876432110 0 01223445678888865 377788899999988761
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccC-CccceEEEeecCc
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWG-HTGALLCLINVGD 290 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 290 (357)
....... .......++++|+|.|+.++.|-.+|++.-|...-.. ...+..... ....|.++.|-..
T Consensus 188 ~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 188 LAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecc
Confidence 1111112 2245678999999999999999999999999765321 111222211 2477899999776
No 389
>PHA03098 kelch-like protein; Provisional
Probab=96.52 E-value=0.43 Score=43.02 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=34.3
Q ss_pred CCCEEEEEecC------CeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC--------CeEEEeeCCCC
Q 038568 245 DGSLLFSGGCD------RWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD--------RTVRIWQRGKE 309 (357)
Q Consensus 245 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------g~i~vw~~~~~ 309 (357)
++++.+.|+.+ +.+..||+.+.+- .....+........++...+..++.||.+ ..+.+||..+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W-~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKW-SKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCee-eecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56667777632 4588899876532 12222111111223344555566666643 23888998875
No 390
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.48 E-value=0.47 Score=40.63 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=81.4
Q ss_pred eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEec-----CCCEEEEEecCCeEEEEecccCCc--
Q 038568 196 VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNG-----DGSLLFSGGCDRWIVVWERERDHR-- 268 (357)
Q Consensus 196 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~vwd~~~~~~-- 268 (357)
++++|+..|.+++|+.. ........+..-..-..+|..+...+ +...||+ -.-..+.||.+.....
T Consensus 39 ~IivGS~~G~LrIy~P~------~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~ 111 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPS------GNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTV 111 (418)
T ss_pred EEEEeccccEEEEEccC------CCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCc
Confidence 69999999999999985 22211112222223457787777543 2234444 5567788888742211
Q ss_pred ----eeeeeeccCCccceE----EE-eec----CceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 269 ----MVFAEALWGHTGALL----CL-INV----GDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 269 ----~~~~~~~~~~~~~v~----~~-~~~----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
...+.....|.-.-. +. .|. .++|++-+.||.+.+|+-+.- .....+.. .--.--+.+.+...
T Consensus 112 ~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~---~f~~~lp~-~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 112 EHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF---AFSRFLPD-FLLPGPLCYCPRTD 187 (418)
T ss_pred ccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE---EEEEEcCC-CCCCcCeEEeecCC
Confidence 011112222222211 11 222 249999999999999998763 21222222 22233467888777
Q ss_pred CCCCCeEEEEEcCCCCeEEec
Q 038568 336 SASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 336 ~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|++++.+..+.-|
T Consensus 188 -------sfvt~sss~~l~~Y 201 (418)
T PF14727_consen 188 -------SFVTASSSWTLECY 201 (418)
T ss_pred -------EEEEecCceeEEEe
Confidence 88888888777655
No 391
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.65 Score=41.97 Aligned_cols=178 Identities=10% Similarity=0.060 Sum_probs=96.3
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCe
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNY 127 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (357)
.|+|++. +|+.+..+.- ..+.+..+.|+.+. |++...+|++.+|++..... ......
T Consensus 65 ~I~If~~--sG~lL~~~~w---~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~i-e~~svg---------------- 122 (829)
T KOG2280|consen 65 YIRIFNI--SGQLLGRILW---KHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFI-ESNSVG---------------- 122 (829)
T ss_pred eEEEEec--cccchHHHHh---cCCCeeeecccCCceEEEEeccceEEEeecchhhh-cccccc----------------
Confidence 6889987 5677776655 44588899999987 99999999999999864322 211100
Q ss_pred EEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhccccc--cccEEEEEEecCCe----EEEEe
Q 038568 128 VTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESVNKAH--EDAVNAVVVSDNGV----VYTGS 201 (357)
Q Consensus 128 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~----l~~~~ 201 (357)
.......|..+.+..+-++.-..+|.+.+-+-.....+...+... .-+-.|-...++.+ ++-..
T Consensus 123 ----------~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~ 192 (829)
T KOG2280|consen 123 ----------FESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVD 192 (829)
T ss_pred ----------cccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeec
Confidence 002223344444444444444555665554433322333332111 11213333333331 11111
Q ss_pred -CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc
Q 038568 202 -ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR 268 (357)
Q Consensus 202 -~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 268 (357)
..+ ..++... ........+....+.+..+..||+.++|+.-...|.|.+-+.+..+.
T Consensus 193 ~~v~-~~~~q~~---------~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 193 VAVG-LHICQVE---------ESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred hhhh-hccccee---------cccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 111 0111111 01111111222235677889999999999999999999998875553
No 392
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.45 E-value=0.62 Score=41.70 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=112.8
Q ss_pred cCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecC
Q 038568 82 ITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWD 161 (357)
Q Consensus 82 ~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 161 (357)
.+.++.++.++.|.-.|..+++..-............ . ......-..+++....++.++.|
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~------------------~-~~~~~~~rg~av~~~~v~v~t~d 129 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIP------------------V-MCCDVVNRGVALYDGKVFFGTLD 129 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCccccc------------------c-cccccccccceEECCEEEEEcCC
Confidence 3447778888899999999887654443211000000 0 00000001123444677888889
Q ss_pred CeEEEEEcCcchhhhhcccccc---ccEEEEEEecCCeEEEEeC------CCeEEEEEccccccccccccceeee-----
Q 038568 162 RSFKIWNASNYKCLESVNKAHE---DAVNAVVVSDNGVVYTGSA------DGRIRVWERSVVDHNKERKSRHMLV----- 227 (357)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~----- 227 (357)
+.|.-.|.++++.+........ ..+.+--.--++.++++.. +|.|..+|.++++..-.........
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~ 209 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDK 209 (527)
T ss_pred CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccc
Confidence 9999999999998877632111 1122111112556665543 6889888887443321111000000
Q ss_pred ----------------eEeecccccee-EEEEecCCCEEEEEecC-----C-----------eEEEEecccCCceeeeee
Q 038568 228 ----------------TTLVKHRSTVN-ALALNGDGSLLFSGGCD-----R-----------WIVVWERERDHRMVFAEA 274 (357)
Q Consensus 228 ----------------~~~~~~~~~v~-~~~~~~~~~~l~~~~~d-----g-----------~i~vwd~~~~~~~~~~~~ 274 (357)
.....-...+. .+++.|+..+++.+..+ + .|.-.|+++++..-.++.
T Consensus 210 ~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~ 289 (527)
T TIGR03075 210 ADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT 289 (527)
T ss_pred cccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC
Confidence 00000111222 45777766677666532 2 577778888876544433
Q ss_pred ccCCc--------cce-EEEeecCc---eEEEecCCCeEEEeeCCCCcc
Q 038568 275 LWGHT--------GAL-LCLINVGD---LLASGSADRTVRIWQRGKENC 311 (357)
Q Consensus 275 ~~~~~--------~~v-~~~~~~~~---~l~~~~~dg~i~vw~~~~~~~ 311 (357)
. .|. .++ ..+..++. .++.+..+|.+++.|-++++.
T Consensus 290 ~-~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 290 T-PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred C-CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2 221 112 22334554 788999999999999999854
No 393
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.35 E-value=0.0091 Score=33.03 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.3
Q ss_pred cCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 322 EKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
...|..++|+|..+ +||.+..||.|.+|
T Consensus 11 ~~~v~~~~w~P~md-------LiA~~t~~g~v~v~ 38 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-------LIALGTEDGEVLVY 38 (47)
T ss_pred CCcEEEEEECCCCC-------EEEEEECCCeEEEE
Confidence 45699999999999 99999999999876
No 394
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.32 E-value=0.59 Score=40.04 Aligned_cols=278 Identities=11% Similarity=0.079 Sum_probs=135.9
Q ss_pred cceEEEeeCC-ceEEEeccCCcc-cc-ceeccccCCCCceEEEEEe---cC---ceEEeecCCeEEEEecCCccceeeee
Q 038568 39 NSLLYAASLN-EINVFDLISDYS-HV-DTFSNDLSSSGSVKSITFH---IT---KIFTAHQDCKIRVWKITASRQHQLVS 109 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~-~~-~~~~~~~~~~~~v~~l~~~---~~---~l~~~~~d~~i~vwd~~~~~~~~~~~ 109 (357)
.+.|++||.. .++||+. .... .. ..+-. ..-..+|..+..- ++ ..++.-.-..+.||.+.........
T Consensus 37 ~d~IivGS~~G~LrIy~P-~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~- 113 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDP-SGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH- 113 (418)
T ss_pred ccEEEEeccccEEEEEcc-CCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc-
Confidence 4689999988 9999998 4322 11 11111 1256788888754 21 2333455677888877322110000
Q ss_pred ecCccccceeeeecCCCeEEEecccccccccc--cccEEEEEEec-------CeEEEEecCCeEEEEEcCcchhhhhccc
Q 038568 110 TLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEH--WDAVSDLVVKQ-------GLMYSVSWDRSFKIWNASNYKCLESVNK 180 (357)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 180 (357)
.+...+.. ...| ......++.-+ .+++.=+.||.+.+++-+.......+
T Consensus 114 ---------------g~~~~L~~-----~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l-- 171 (418)
T PF14727_consen 114 ---------------GNQYQLEL-----IYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL-- 171 (418)
T ss_pred ---------------CcEEEEEE-----EEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc--
Confidence 00000000 0011 11222333322 67888899999999997654322222
Q ss_pred cccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccc-------------cceeeeeEeeccccceeEEE---Ee
Q 038568 181 AHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERK-------------SRHMLVTTLVKHRSTVNALA---LN 243 (357)
Q Consensus 181 ~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~~~~---~~ 243 (357)
..---...+.+.+.. .|++++.+..+..|............ ....+--.+. -...+..+. ++
T Consensus 172 p~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 172 PDFLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFS 250 (418)
T ss_pred CCCCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcC
Confidence 112222345666654 68999999999999875432221110 1111111111 122333333 32
Q ss_pred cCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee----cCc---eEEEecCCCeEEEeeCCCCcceeeee
Q 038568 244 GDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN----VGD---LLASGSADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~----~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~ 316 (357)
.....+++-+ ...+.+.+.. + .+...+.+............ .++ .++.++.++.+.||.=.+ .+-
T Consensus 251 ~~~~~IvvLg-er~Lf~l~~~-G-~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~W 322 (418)
T PF14727_consen 251 SSESDIVVLG-ERSLFCLKDN-G-SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVW 322 (418)
T ss_pred CCCceEEEEe-cceEEEEcCC-C-eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEE
Confidence 2222333333 3446666553 3 33344444332222221111 222 589999999999997553 222
Q ss_pred eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEe
Q 038568 317 FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKV 355 (357)
Q Consensus 317 ~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~ 355 (357)
..+....|| ++....-.. -. ..|++-+.+|.+.+
T Consensus 323 sA~l~~~PV-al~v~~~~~--~~--G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 323 SAQLPHVPV-ALSVANFNG--LK--GLIVSLSDEGQLSV 356 (418)
T ss_pred ecCCCCCCE-EEEecccCC--CC--ceEEEEcCCCcEEE
Confidence 222233343 343332110 00 18899999998865
No 395
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.00021 Score=59.60 Aligned_cols=245 Identities=11% Similarity=0.038 Sum_probs=142.3
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---eEEeecCCeEEEEecCCccceeeeeecCcc
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---IFTAHQDCKIRVWKITASRQHQLVSTLPTV 114 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 114 (357)
+..++.++.+ .+..||- .++...... .++....++|.-++ ++.+-..+.+.+||+.+....+.-...
T Consensus 46 ~~nlavaca~tiv~~YD~--agq~~le~n----~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg--- 116 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDK--AGQVILELN----PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG--- 116 (615)
T ss_pred CCceehhhhhhHHHhhhh--hcceecccC----CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC---
Confidence 5568888888 9999986 445554444 55667788888654 666777899999999865432111100
Q ss_pred ccceeeeecCCCeEEEecccccccccccccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe
Q 038568 115 KDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS 192 (357)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 192 (357)
.|.... +.|++ ..++.+...|.+.+++..+.+.+... ..|...+.++++.
T Consensus 117 -------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 117 -------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVT 168 (615)
T ss_pred -------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEec
Confidence 122222 55666 66777778899999999888877776 5599999999999
Q ss_pred cCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc--ceeEEE---EecCCCEEEEEecCCeEEEE--eccc
Q 038568 193 DNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS--TVNALA---LNGDGSLLFSGGCDRWIVVW--ERER 265 (357)
Q Consensus 193 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~---~~~~~~~l~~~~~dg~i~vw--d~~~ 265 (357)
+.++.+.++.|..+.+-.... ......+..+... .-..++ |..-|..+.+.-. |.+.+. ....
T Consensus 169 lEd~vil~dcd~~L~v~~qeg---------eta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE 238 (615)
T KOG2247|consen 169 LEDYVILCDCDNTLSVTTQEG---------ETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNE 238 (615)
T ss_pred ccceeeecCcHHHHHHhhhcc---------ceeeeeeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcC
Confidence 999888887776654433220 0000111111000 001111 2223333332211 111111 1111
Q ss_pred CCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe
Q 038568 266 DHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 266 ~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 331 (357)
......+ .+....+.+.|..|-.+ +|..+.+-|.|..-...+++....+.....|.+.+.+++.+
T Consensus 239 ~D~pval-~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavs 304 (615)
T KOG2247|consen 239 LDEPVAL-QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVS 304 (615)
T ss_pred CCCccce-EeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHH
Confidence 1111122 33345566788888888 88888888888888877765433333333566666555544
No 396
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.74 Score=41.65 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=48.6
Q ss_pred ccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcc
Q 038568 143 DAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 143 ~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~ 212 (357)
+...++..+| +..-..+.--.|+|+++ +|+.+..+ .-....+-.+.|+.+..|++...+|++++|++-
T Consensus 44 gGpIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~-~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRI-LWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred CCceEEEecccccccccccceeEEEEec-cccchHHH-HhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 3444556666 21111134457999997 57777777 344448889999999999999999999999986
No 397
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.16 E-value=0.6 Score=42.29 Aligned_cols=182 Identities=13% Similarity=0.068 Sum_probs=86.2
Q ss_pred ccEEEEEEec--CeEEEEe------cCC--eEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCC-CeEEEEE
Q 038568 143 DAVSDLVVKQ--GLMYSVS------WDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD-GRIRVWE 210 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d-~~i~i~d 210 (357)
..+.+.+.++ +.++... .|. .|.+++. +.....+.. ......-.|+|+| .+.+.... ..+++.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec--CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 3566777887 4444433 233 4555554 222233312 2237788999996 45555432 1222222
Q ss_pred ccccccccc-cccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE---EecccCCceee--eeecc-CCccceE
Q 038568 211 RSVVDHNKE-RKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV---WERERDHRMVF--AEALW-GHTGALL 283 (357)
Q Consensus 211 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v---wd~~~~~~~~~--~~~~~-~~~~~v~ 283 (357)
-........ ......... .....|..+.|+|||..++... +++|++ -....+. ... ...+. +-...+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence 110000000 000001111 2345799999999999888765 577777 4433333 111 11121 2223357
Q ss_pred EEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeC
Q 038568 284 CLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISS 333 (357)
Q Consensus 284 ~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 333 (357)
.+.|.++ .|+++..++.-.+|.+.-.........-.....++..++-.++
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 7888776 4555555554555654422111111111112566777777763
No 398
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.16 E-value=0.97 Score=40.99 Aligned_cols=135 Identities=10% Similarity=0.019 Sum_probs=69.9
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEee-cccccee
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV-KHRSTVN 238 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v~ 238 (357)
.+.+.+.++..++... .....|..+.|+||| +++... ++.|.+--+.... .+.........+. .....+.
T Consensus 429 ~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~---~G~~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 429 TGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE---DGQYALTNPREVGPGLGDTAV 500 (591)
T ss_pred CceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC---CCceeecccEEeecccCCccc
Confidence 3456555666554433 234569999999999 444433 5777774333110 1110111111222 2333468
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEe
Q 038568 239 ALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIW 304 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw 304 (357)
.+.|.+++.++ ++..++.-.+|.+.-.........-......+..++-.+..++....+|.+.+=
T Consensus 501 ~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 501 SLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARAVLQLP 565 (591)
T ss_pred cceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCceEEec
Confidence 89999988754 555555555555432221111101111245667777777766677777755443
No 399
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.10 E-value=0.54 Score=37.53 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=76.9
Q ss_pred cEEEEEEecCCe-EEEEe---CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 038568 185 AVNAVVVSDNGV-VYTGS---ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVV 260 (357)
Q Consensus 185 ~v~~~~~~~~~~-l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 260 (357)
.+.+.++++++. ++... ....++++... ....... ....+..-.|++++...+....+...++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-----------~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-----------GPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRV 91 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-----------Ccceeec--cCCccccccccCCCCEEEEEcCCCceEE
Confidence 688899999994 43333 33445554432 1111111 2236778899999877777666666676
Q ss_pred Ee-cccCCceeeeeeccCCccceEEEeecCc-----eEEEecCCCeEEEeeCCCCcce------eeeeeecCCcCceEEE
Q 038568 261 WE-RERDHRMVFAEALWGHTGALLCLINVGD-----LLASGSADRTVRIWQRGKENCY------RCMAFLEGHEKPVKSL 328 (357)
Q Consensus 261 wd-~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~l~~~~~dg~i~vw~~~~~~~~------~~~~~~~~h~~~v~~~ 328 (357)
+. ..++......-....-...|..+.++++ +++....++.|.+=-+...... ............++++
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v 171 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDV 171 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceee
Confidence 64 2222221111111111127888888887 3444445677887765432111 1122222345689999
Q ss_pred EEeeCCC
Q 038568 329 VAISSSS 335 (357)
Q Consensus 329 ~~~~~~~ 335 (357)
.|.++..
T Consensus 172 ~W~~~~~ 178 (253)
T PF10647_consen 172 AWSDDST 178 (253)
T ss_pred eecCCCE
Confidence 9999987
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.10 E-value=0.64 Score=41.91 Aligned_cols=119 Identities=12% Similarity=0.180 Sum_probs=71.0
Q ss_pred eEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeec----CceEEEecCCCeEEE
Q 038568 228 TTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINV----GDLLASGSADRTVRI 303 (357)
Q Consensus 228 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~v 303 (357)
..+...-....-+.-+.-++.-++-+...++.|||.+.+. + ...........|..+.|. ++.+++.|-.+.|.+
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-l-E~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-L-EYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE-E-EEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 3333333444555555555555555556679999998765 2 222222456788888775 337777777888888
Q ss_pred eeCC------CCcceeeeeee--cCCc-CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 304 WQRG------KENCYRCMAFL--EGHE-KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 304 w~~~------~~~~~~~~~~~--~~h~-~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
+--. .+..+..+..+ ..|. .+|.+..|.++|. |+.|+ ++.+.|+|
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~--------LvV~s-GNqlfv~d 154 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT--------LVVGS-GNQLFVFD 154 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe--------EEEEe-CCEEEEEC
Confidence 8531 22223334333 3344 6899999999995 44444 34566654
No 401
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.21 Score=42.12 Aligned_cols=139 Identities=10% Similarity=0.096 Sum_probs=88.5
Q ss_pred EEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 187 NAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 187 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
+.+-|...++.+.+-..|.+.=|-... .. ...+...-....++|.++.|++|.+.|++--.+.+|.+++....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkg------pn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKG------PN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeC------CC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 344555545444444455565666541 11 22333333445679999999999999999999999999998543
Q ss_pred Cce-eeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 267 HRM-VFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 267 ~~~-~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
+.. ......+.....|..+.|..+ -+|.-...| +-+|.....+ +.+...+.|+-.|+-..|+++.+
T Consensus 99 ~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 99 NSQLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred chhhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccc
Confidence 321 112223334456888889876 555555444 7777766542 44556667788888888988876
No 402
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.05 E-value=1.3 Score=41.45 Aligned_cols=69 Identities=10% Similarity=0.225 Sum_probs=45.7
Q ss_pred cceEEEeeCC-ceEEEeccCCccccceeccccCCCC-----ceEEEEEe------------------cCceEEeecCCeE
Q 038568 39 NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSG-----SVKSITFH------------------ITKIFTAHQDCKI 94 (357)
Q Consensus 39 ~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~l~~~------------------~~~l~~~~~d~~i 94 (357)
+..|+.++.+ .|.-.|. .+++.+-.+........ ....+++. .+.++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa-~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDA-ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 7778888887 9999999 88888777653111110 01223332 1248888889999
Q ss_pred EEEecCCccceeee
Q 038568 95 RVWKITASRQHQLV 108 (357)
Q Consensus 95 ~vwd~~~~~~~~~~ 108 (357)
.-.|.++++....+
T Consensus 273 iALDA~TGk~~W~f 286 (764)
T TIGR03074 273 IALDADTGKLCEDF 286 (764)
T ss_pred EEEECCCCCEEEEe
Confidence 99999998765443
No 403
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.92 E-value=0.89 Score=38.47 Aligned_cols=51 Identities=4% Similarity=0.175 Sum_probs=34.8
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQ 104 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~ 104 (357)
.+.|+|+ ++++.. .+.. ....+....|+|++ .++--.++.|.+++..+++.
T Consensus 24 ~y~i~d~-~~~~~~-~l~~---~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 24 DYYIYDI-ETGEIT-PLTP---PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE 75 (353)
T ss_dssp EEEEEET-TTTEEE-ESS----EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE
T ss_pred eEEEEec-CCCceE-ECcC---CccccccceeecCCCeeEEEecCceEEEECCCCCe
Confidence 7889999 764433 3332 35678899999998 44444578999999877643
No 404
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.78 E-value=0.74 Score=36.45 Aligned_cols=186 Identities=11% Similarity=0.034 Sum_probs=102.0
Q ss_pred ccEEEEEE-ec-CeEEEEecCC--eEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccc
Q 038568 143 DAVSDLVV-KQ-GLMYSVSWDR--SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 143 ~~v~~~~~-~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
.-...+.| .. .++-+.+.-| .|+.+|+.+++.+........-.-..++...+....-.-.++...+||..
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~------ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPN------ 118 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETT------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccc------
Confidence 34456777 44 4555665555 79999999998776653333334445666655555556778999999987
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---eEEEeecCc-eEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---LLCLINVGD-LLAS 294 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~~~-~l~~ 294 (357)
..+.+.++. ..+.=+.++ .+++.|+.+.....|+.+|..+-+....+.... ...+ +.-+.+-.. ..|=
T Consensus 119 ----tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyAN 190 (264)
T PF05096_consen 119 ----TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYAN 190 (264)
T ss_dssp ----TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEE
T ss_pred ----cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEE
Confidence 333444443 223445666 466777777777889999988665443333221 2222 344444433 3333
Q ss_pred ecCCCeEEEeeCCCCcceeeeee------e------cCCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 295 GSADRTVRIWQRGKENCYRCMAF------L------EGHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~~~~~~~------~------~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
.=....|...|..+|+....+.. . .....-.++|++.|... .+++||-
T Consensus 191 VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~------~l~vTGK 250 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD------RLFVTGK 250 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT------EEEEEET
T ss_pred eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC------EEEEEeC
Confidence 33445566667776632221110 0 01135688999999876 5777773
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.085 Score=49.51 Aligned_cols=101 Identities=13% Similarity=0.025 Sum_probs=67.4
Q ss_pred ccEEEEEEec---CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEcccccccc
Q 038568 143 DAVSDLVVKQ---GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNK 218 (357)
Q Consensus 143 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~ 218 (357)
....++.|+| ...+....|+.|++..+........- .......++++|+|.| +++.|-..|++.-|.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---- 230 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---- 230 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc----
Confidence 4567888998 67788888999999877543322222 3566788999999999 5999999999998876510
Q ss_pred ccccceeeeeEeeccccceeEEEEecCCCEEEE
Q 038568 219 ERKSRHMLVTTLVKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.....+..... ....|.++.|-....++++
T Consensus 231 --ik~~ip~Pp~~-e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 231 --IKSEIPEPPVE-ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --eeecccCCCcC-CCcceeEEEEecceeEEEE
Confidence 00000000011 1467889999876555554
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=95.52 E-value=1.2 Score=37.24 Aligned_cols=155 Identities=9% Similarity=0.020 Sum_probs=83.2
Q ss_pred cccEEEEEEec-CeEEEEecCCeEEEE-EcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccc
Q 038568 142 WDAVSDLVVKQ-GLMYSVSWDRSFKIW-NASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 142 ~~~v~~~~~~~-~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
...+.++.+.+ ..++..+..|.+..- |- .++.-..........++++.+.+++.++..+..|.+++=... .
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d------~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD------D 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC------C
Confidence 45678888888 555666666765532 21 122222222345567889999998876666677876532111 1
Q ss_pred cccceeeeeEe-eccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEee-cCceEEEecC
Q 038568 220 RKSRHMLVTTL-VKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLIN-VGDLLASGSA 297 (357)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~ 297 (357)
+. ..+....- ......+..+.+.|++..+++ +.+|.+. .....++..........-......+.+ +++..+..+.
T Consensus 245 G~-sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 245 LE-SWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred CC-ccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 00 11111110 112235778889988775554 4667554 445555543332211122233444554 4556667777
Q ss_pred CCeEEEeeC
Q 038568 298 DRTVRIWQR 306 (357)
Q Consensus 298 dg~i~vw~~ 306 (357)
.|.|--|+-
T Consensus 322 ~G~il~~~~ 330 (334)
T PRK13684 322 RGVLLRYVG 330 (334)
T ss_pred CceEEEecC
Confidence 888877754
No 407
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.44 E-value=1 Score=41.20 Aligned_cols=120 Identities=14% Similarity=0.102 Sum_probs=73.8
Q ss_pred ceeEEEEec--CCCEEEEEecCCeEEEEecccCC-----------c------eeeeeeccCCccceEEEeec--C--ceE
Q 038568 236 TVNALALNG--DGSLLFSGGCDRWIVVWERERDH-----------R------MVFAEALWGHTGALLCLINV--G--DLL 292 (357)
Q Consensus 236 ~v~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~-----------~------~~~~~~~~~~~~~v~~~~~~--~--~~l 292 (357)
.|+.|.... +...|+.+..||.|.+|..++-. . +.+...+ .-...++.+++. . .+|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 355565544 45689999999999999763210 0 0011111 123456777776 3 388
Q ss_pred EEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 293 ASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|+++....|.||-+...........-..|..-|-+|+|.++.... .|...|++++-.|.+-+|+
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~-~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDP-NGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCC-ccceEEEEEeccCcEEEEE
Confidence 888888888888765421111111112366679999999987422 2224788899999988764
No 408
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.39 E-value=1.1 Score=40.47 Aligned_cols=109 Identities=10% Similarity=0.171 Sum_probs=67.0
Q ss_pred CeEEEEe-cCCeEEEEEcCcchhhhhccccccccEEEEEEe--cCC-eEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVS-WDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS--DNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
+.++... ....+.|||.+.+.....-.....+.|..+.|. |++ .+++.+..+.|.+|--...+.... .+...++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~-~p~w~~i~ 119 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK-GPSWAPIR 119 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC-CcccceeE
Confidence 3344433 345799999988774444322457889999997 566 477778888888886432221111 11223333
Q ss_pred Ee--eccc-cceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 229 TL--VKHR-STVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 229 ~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
.+ ..++ .+|.+..|.++|.+++.+ ++++.|+|-.
T Consensus 120 ~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 120 KIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 32 3343 678999999998655443 4568888753
No 409
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.38 E-value=1.4 Score=36.91 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=37.9
Q ss_pred ceEEEecCCCeEEEeeCCCCcceeeee-eecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEE
Q 038568 290 DLLASGSADRTVRIWQRGKENCYRCMA-FLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 290 ~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~ 354 (357)
.++++.-..+.|....+.......... .+......+.++++.||+. +.++-+.+|.|.
T Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-------Lyv~~d~~G~iy 330 (331)
T PF07995_consen 272 DLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-------LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-------EEEEE-TTTTEE
T ss_pred cEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-------EEEEECCCCeEe
Confidence 366666667788888886543222222 2344555899999999997 777777788774
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=1.2 Score=35.71 Aligned_cols=165 Identities=10% Similarity=0.098 Sum_probs=90.6
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....+.++.|+|+. |++......-.||=...++.+..+.... -..--.+
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----------------------------~~DpE~I 134 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----------------------------FSDPETI 134 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----------------------------cCChhHe
Confidence 45569999999986 7777776776677666666554443211 1111223
Q ss_pred EEec--CeEEEEecCCeEEEEEcCcch----------hhhhccccccccEEEEEEecCC-eEEEEeCCCeEEEEEccccc
Q 038568 149 VVKQ--GLMYSVSWDRSFKIWNASNYK----------CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGRIRVWERSVVD 215 (357)
Q Consensus 149 ~~~~--~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~ 215 (357)
.+.. .+.++--.++.+.++.+.... .+... ...+.....++|.|.+ .|+.+-+-.-+.||.+....
T Consensus 135 eyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~-~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~ 213 (316)
T COG3204 135 EYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTT-NKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP 213 (316)
T ss_pred EEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEecccc-CCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC
Confidence 3333 233333344555555443321 12222 2225678899999987 58888888888888876211
Q ss_pred cccccccceeeeeEeeccccceeEEEEec-CCCEEEEEecCCeEEEEeccc
Q 038568 216 HNKERKSRHMLVTTLVKHRSTVNALALNG-DGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 265 (357)
..........+.....-.-..|.++.|++ .+.+|+.+.+++.+.-.|...
T Consensus 214 ~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 214 SSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 10000000000000000123477888987 556777777788888777763
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.24 E-value=1.7 Score=37.05 Aligned_cols=140 Identities=17% Similarity=0.212 Sum_probs=68.0
Q ss_pred ccEEEEEEecCCeEEEEeC------------CC-eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE
Q 038568 184 DAVNAVVVSDNGVVYTGSA------------DG-RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF 250 (357)
Q Consensus 184 ~~v~~~~~~~~~~l~~~~~------------d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 250 (357)
.....|+|.++|.|.++.. .+ .|.+++-. ...........+...-.....+++.+++ |+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~------dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--ly 85 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDA------DGDGKYDKSNVFAEELSMVTGLAVAVGG--VY 85 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcC------CCCCCcceeEEeecCCCCccceeEecCC--EE
Confidence 3456788899887666642 22 66666543 1111111222333333456889999888 44
Q ss_pred EEecCCeEEEEecccC-----CceeeeeeccC----CccceEEEeecCc---eEEEecC------------------CCe
Q 038568 251 SGGCDRWIVVWERERD-----HRMVFAEALWG----HTGALLCLINVGD---LLASGSA------------------DRT 300 (357)
Q Consensus 251 ~~~~dg~i~vwd~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~---~l~~~~~------------------dg~ 300 (357)
+++.....++.|.... +.......+.. +......+.+.++ ++..++. .|.
T Consensus 86 V~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 86 VATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred EeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4444443334354321 21112222322 1233456666665 3333421 134
Q ss_pred EEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 301 VRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 301 i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
|.-++...++ .+. ...++ .....++|++++.
T Consensus 166 i~r~~pdg~~-~e~--~a~G~-rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 166 LFRYNPDGGK-LRV--VAHGF-QNPYGHSVDSWGD 196 (367)
T ss_pred EEEEecCCCe-EEE--EecCc-CCCccceECCCCC
Confidence 5555555431 111 12333 3356899999887
No 412
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.19 E-value=1.9 Score=37.43 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=94.2
Q ss_pred cEEEEEEec--CeEE-EEecCC----eEEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEe-C----------CC
Q 038568 144 AVSDLVVKQ--GLMY-SVSWDR----SFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGS-A----------DG 204 (357)
Q Consensus 144 ~v~~~~~~~--~~l~-~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~----------d~ 204 (357)
.+....++| ++++ +.+..| .|+++|+.+++.+... . .......+.|.+++. |+... . ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i-~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-I-ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-E-EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-c-cccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344667777 5555 334445 4999999998765432 1 111222399999973 43333 2 22
Q ss_pred eEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEec---C-CeEEEEecccC----Cceeeeeecc
Q 038568 205 RIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGC---D-RWIVVWERERD----HRMVFAEALW 276 (357)
Q Consensus 205 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~vwd~~~~----~~~~~~~~~~ 276 (357)
.|+.|++. +.......+............+..++++++|+.... + ..+++.++... .....+. .
T Consensus 203 ~v~~~~~g------t~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~--~ 274 (414)
T PF02897_consen 203 QVYRHKLG------TPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS--P 274 (414)
T ss_dssp EEEEEETT------S-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE--E
T ss_pred EEEEEECC------CChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe--C
Confidence 36777765 222222233333222222567888999998776443 3 45888888764 1222221 1
Q ss_pred CCccceEEEeecCc--eEEEe--cCCCeEEEeeCCCCcceeeeeeecCCcC--ceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 277 GHTGALLCLINVGD--LLASG--SADRTVRIWQRGKENCYRCMAFLEGHEK--PVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 277 ~~~~~v~~~~~~~~--~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
...+....+...++ ++.+- ...+.|...++.+.........+-.+.. .+..+....+ .+++..-.+
T Consensus 275 ~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~--------~Lvl~~~~~ 346 (414)
T PF02897_consen 275 REDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD--------YLVLSYREN 346 (414)
T ss_dssp SSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT--------EEEEEEEET
T ss_pred CCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC--------EEEEEEEEC
Confidence 22233333444455 33332 2246777778877643122224444544 3545544333 245555555
Q ss_pred Ce
Q 038568 351 GE 352 (357)
Q Consensus 351 g~ 352 (357)
+.
T Consensus 347 ~~ 348 (414)
T PF02897_consen 347 GS 348 (414)
T ss_dssp TE
T ss_pred Cc
Confidence 54
No 413
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.17 E-value=1.1 Score=40.87 Aligned_cols=152 Identities=10% Similarity=0.141 Sum_probs=87.6
Q ss_pred CeEEEEecCCeEEEEEcCcchhhh------hcc---------------ccccccEEEEEEecCC---eEEEEeCCCeEEE
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLE------SVN---------------KAHEDAVNAVVVSDNG---VVYTGSADGRIRV 208 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~------~~~---------------~~~~~~v~~~~~~~~~---~l~~~~~d~~i~i 208 (357)
++++.+. .+.|.||++....... .+. ......|+.|....=+ .|+.+..||.|.+
T Consensus 50 n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~ 128 (717)
T PF08728_consen 50 NLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVLA 128 (717)
T ss_pred CEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEEE
Confidence 4555544 6789999876422211 110 0123346666554423 4899999999999
Q ss_pred EEccccccc--------cc--cccceeeeeEeeccccceeEEEEe--cCCCEEEEEecCCeEEEEecccCCceeeeeecc
Q 038568 209 WERSVVDHN--------KE--RKSRHMLVTTLVKHRSTVNALALN--GDGSLLFSGGCDRWIVVWERERDHRMVFAEALW 276 (357)
Q Consensus 209 ~d~~~~~~~--------~~--~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 276 (357)
|..+..-.. .. .....++...+. ....+++++++ ...++||+++....|.||-............-.
T Consensus 129 Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~ 207 (717)
T PF08728_consen 129 YYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSH 207 (717)
T ss_pred EEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccccc
Confidence 987532110 00 000111222222 34578999998 788899999888888888665421111111111
Q ss_pred CCccceEEEeecC-----c---eEEEecCCCeEEEeeC
Q 038568 277 GHTGALLCLINVG-----D---LLASGSADRTVRIWQR 306 (357)
Q Consensus 277 ~~~~~v~~~~~~~-----~---~l~~~~~dg~i~vw~~ 306 (357)
.+...|-+++|-+ . .+++++-.|.+.+|++
T Consensus 208 ~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 208 QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2444555565532 2 6788889999999888
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.08 E-value=0.11 Score=27.93 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=26.0
Q ss_pred cceeEEEEecCC---CEEEEEecCCeEEEEecccC
Q 038568 235 STVNALALNGDG---SLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 235 ~~v~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~ 266 (357)
+.+.++.|+|+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368899999844 48888888899999999953
No 415
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.08 E-value=3.1 Score=39.21 Aligned_cols=184 Identities=9% Similarity=0.062 Sum_probs=96.7
Q ss_pred cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecC--ceEEeecCCeEEEEecCCccceeeeeecCcccc
Q 038568 39 NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT--KIFTAHQDCKIRVWKITASRQHQLVSTLPTVKD 116 (357)
Q Consensus 39 ~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~ 116 (357)
++.|+-...+.||+++- . ..+..+. ..+.++....+.+ .++.++.++.+...++...........
T Consensus 461 g~~lvQvTs~~iRl~ss-~--~~~~~W~----~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~------ 527 (1096)
T KOG1897|consen 461 GNQLVQVTSNSIRLVSS-A--GLRSEWR----PPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHK------ 527 (1096)
T ss_pred CceEEEEecccEEEEcc-h--hhhhccc----CCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeeh------
Confidence 44555555556777775 3 3444555 3344444443333 377777777777777765542111111
Q ss_pred ceeeeecCCCeEEEecccccccccccccEEEEEEec-----C---eEEEEecCCeEEEEEcCc-chhhhhccc---cccc
Q 038568 117 RLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-----G---LMYSVSWDRSFKIWNASN-YKCLESVNK---AHED 184 (357)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~l~~~~~dg~i~iwd~~~-~~~~~~~~~---~~~~ 184 (357)
.....|.|+.++| + +++.|..+..+.+.-.-. ...+..... .-+.
T Consensus 528 -----------------------~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR 584 (1096)
T KOG1897|consen 528 -----------------------EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR 584 (1096)
T ss_pred -----------------------eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence 3456789998886 3 788888877665543322 111111101 1223
Q ss_pred cEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 038568 185 AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWER 263 (357)
Q Consensus 185 ~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 263 (357)
.|.-..+-.+. +|+++..||.+.-|.+.... ......+...-...|+.--.|+..++.-+.+..|.-..+|..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~t------g~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~ 658 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINT------GQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS 658 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEccc------ceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec
Confidence 34444444434 79999999999888766211 111111111112345555556665554444445665666655
Q ss_pred c
Q 038568 264 E 264 (357)
Q Consensus 264 ~ 264 (357)
+
T Consensus 659 n 659 (1096)
T KOG1897|consen 659 N 659 (1096)
T ss_pred C
Confidence 4
No 416
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=0.64 Score=44.76 Aligned_cols=162 Identities=10% Similarity=0.114 Sum_probs=93.0
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
|...=..+-+-|.. =+-.+.|+.+.+|+.+++.....+..+. ..|..+.
T Consensus 77 ~~~~~~~mGiFpeI~RaWiTiDn~L~lWny~~~~e~~~~d~~s------------------------------htIl~V~ 126 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWITIDNNLFLWNYESDNELAEYDGLS------------------------------HTILKVG 126 (1311)
T ss_pred CcceeeeeccchhhcceEEEeCCeEEEEEcCCCCccccccchh------------------------------hhheeee
Confidence 33333445555543 4556678999999999876655554332 2222222
Q ss_pred --------Eec--CeEEEEecCCeEEEEEcCcchh---h------hhccccccccEEEEEEecCCeEEEEeCCCeEEEEE
Q 038568 150 --------VKQ--GLMYSVSWDRSFKIWNASNYKC---L------ESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 150 --------~~~--~~l~~~~~dg~i~iwd~~~~~~---~------~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d 210 (357)
|.| ++++..+.--.|.++-+.-.+. . ..+ ...+..|+++....+|+++-++.|| .+|.
T Consensus 127 LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i-~~dg~~V~~I~~t~nGRIF~~G~dg--~lyE 203 (1311)
T KOG1900|consen 127 LVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI-SVDGVSVNCITYTENGRIFFAGRDG--NLYE 203 (1311)
T ss_pred eecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee-ecCCceEEEEEeccCCcEEEeecCC--CEEE
Confidence 222 3333333333455553321110 0 111 2235678899988899988888888 5565
Q ss_pred cccccccccccc--------------ceeeeeEee-ccccceeEEEEecCCCEEEEEecCCeEEEEeccc
Q 038568 211 RSVVDHNKERKS--------------RHMLVTTLV-KHRSTVNALALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 211 ~~~~~~~~~~~~--------------~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
+.......-... -...+..+. .+..+|..++....-..+.+-+..|.|.+||+..
T Consensus 204 l~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 204 LVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 542221100000 000011222 5677999999998888999999999999999976
No 417
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.91 E-value=0.91 Score=39.20 Aligned_cols=143 Identities=11% Similarity=0.167 Sum_probs=86.9
Q ss_pred cceEEE-eeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCc---------eEEeecCCeEEEEecCCccceee
Q 038568 39 NSLLYA-ASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK---------IFTAHQDCKIRVWKITASRQHQL 107 (357)
Q Consensus 39 ~~~l~t-~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~---------l~~~~~d~~i~vwd~~~~~~~~~ 107 (357)
.++|.. |+.. .++--|+ +.++.+..... |... -+.|.|.. -+.|-.+..|.-.|.+-....-.
T Consensus 479 ssli~~dg~~~~kLykmDI-ErGkvveeW~~---~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 479 SSLIYLDGGERDKLYKMDI-ERGKVVEEWDL---KDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred cceEEecCCCcccceeeec-ccceeeeEeec---CCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 344444 3344 7777788 78888888875 5444 56777752 34455555555556543321111
Q ss_pred eeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccccccccE
Q 038568 108 VSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAV 186 (357)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v 186 (357)
...... + .......+..-.. .+++.++..|.|++||--.-+....+ .+....|
T Consensus 553 v~esKd------------------------Y-~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal-P~lG~aI 606 (776)
T COG5167 553 VVESKD------------------------Y-KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL-PGLGDAI 606 (776)
T ss_pred eeeehh------------------------c-cccccccccccccCceEEEecCCCceeeehhhcchhhhcC-cccccce
Confidence 111000 0 1112233333333 89999999999999995433333444 7778899
Q ss_pred EEEEEecCCeEEEEeCCCeEEEEEccc
Q 038568 187 NAVVVSDNGVVYTGSADGRIRVWERSV 213 (357)
Q Consensus 187 ~~~~~~~~~~l~~~~~d~~i~i~d~~~ 213 (357)
..+....+|..+.+.....+.+.|++.
T Consensus 607 k~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 607 KHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred eeeEeecCCcEEEEeecceEEEEeccc
Confidence 999999999655555567888888864
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.81 Score=38.88 Aligned_cols=152 Identities=5% Similarity=-0.020 Sum_probs=90.2
Q ss_pred EEEEEEec-CeEEEEecCCeEEEEEcCcch--hhhhccccccccEEEEEEecCCe-EEEEeCCCeEEEEEcccccccccc
Q 038568 145 VSDLVVKQ-GLMYSVSWDRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKER 220 (357)
Q Consensus 145 v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~ 220 (357)
-+.+-|.. +..+.+...|.+.-|-++... ....+.....++|.++.|++|++ +++--.+.+|.+++... .
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~------d 98 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIP------D 98 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCC------C
Confidence 34455655 444444555667777654322 22233245567999999999996 88888899999998751 1
Q ss_pred ccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc----eEEEec
Q 038568 221 KSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD----LLASGS 296 (357)
Q Consensus 221 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~~~~ 296 (357)
+.......+.+.....|....|..+ .-++.-...| +-+|-...... ..+....|+..|.-..|.++ +|+++-
T Consensus 99 ~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr--slRlVks~~~nvnWy~yc~et~v~LL~t~~ 174 (657)
T KOG2377|consen 99 NSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR--SLRLVKSHNLNVNWYMYCPETAVILLSTTV 174 (657)
T ss_pred chhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh--hhhhhhhcccCccEEEEccccceEeeeccc
Confidence 1122223333444556888888865 5566665555 67776554332 23344457777877777776 444443
Q ss_pred CCCeEEEeeC
Q 038568 297 ADRTVRIWQR 306 (357)
Q Consensus 297 ~dg~i~vw~~ 306 (357)
..+++.=+.+
T Consensus 175 ~~n~lnpf~~ 184 (657)
T KOG2377|consen 175 LENVLNPFHF 184 (657)
T ss_pred cccccccEEE
Confidence 4444443433
No 419
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.81 E-value=2.1 Score=37.88 Aligned_cols=149 Identities=11% Similarity=0.087 Sum_probs=80.0
Q ss_pred ccEEEEEEecCCe-EEEEe--CCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecC----CCEEEEEecCC
Q 038568 184 DAVNAVVVSDNGV-VYTGS--ADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGD----GSLLFSGGCDR 256 (357)
Q Consensus 184 ~~v~~~~~~~~~~-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg 256 (357)
.++..++|..... +++.- .+|.+++=|-. .+. .-.-|..+.|.|- ...|++.-...
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~-------------viG----qFEhV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK-------------VIG----QFEHVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc-------------Eee----ccceeeeeeecCcccCCCCceEEEeccc
Confidence 4677888875443 33332 34444443322 222 2345889999983 33555566778
Q ss_pred eEEEEecccC--Cceeee--eec-cCCccce--EEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEE
Q 038568 257 WIVVWERERD--HRMVFA--EAL-WGHTGAL--LCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKS 327 (357)
Q Consensus 257 ~i~vwd~~~~--~~~~~~--~~~-~~~~~~v--~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~ 327 (357)
.|.||.+... +.-... ++. .+..-++ ..+.|+|+ .|+.=.....-.+++++... .+....+ ...+.|.|
T Consensus 83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~-srVkaDi-~~~G~IhC 160 (671)
T PF15390_consen 83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS-SRVKADI-KTSGLIHC 160 (671)
T ss_pred eEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC-ceEEEec-cCCceEEE
Confidence 8999998621 111111 110 0111222 34567777 44443433333455665432 1223334 34678999
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.+|.+||+ +++++.|..=.-++||
T Consensus 161 ACWT~DG~------RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 161 ACWTKDGQ------RLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEecCcCC------EEEEEeCCeEEEEEec
Confidence 99999998 4444555554567786
No 420
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.73 E-value=0.34 Score=37.62 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=51.0
Q ss_pred ccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc------cc-------cccccEEEEEEecCCeEEEEeCCCeEEEE
Q 038568 143 DAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV------NK-------AHEDAVNAVVVSDNGVVYTGSADGRIRVW 209 (357)
Q Consensus 143 ~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~l~~~~~d~~i~i~ 209 (357)
.++..+....+++++.+.+|.+++||+.+++.+..- -. .....|..+.++.+|..++.-.+|..+.|
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y 92 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSY 92 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEe
Confidence 355556666688999999999999999987643321 12 35567888889988864444556888999
Q ss_pred Ecc
Q 038568 210 ERS 212 (357)
Q Consensus 210 d~~ 212 (357)
+..
T Consensus 93 ~~~ 95 (219)
T PF07569_consen 93 SPD 95 (219)
T ss_pred ccc
Confidence 875
No 421
>PHA02790 Kelch-like protein; Provisional
Probab=94.56 E-value=3.2 Score=36.91 Aligned_cols=140 Identities=12% Similarity=0.042 Sum_probs=67.0
Q ss_pred CeEEEEecC--CeEEEEEcCcch--hhhhccccccccEEEEEEecCCe-EEEEeCCC---eEEEEEccccccccccccce
Q 038568 153 GLMYSVSWD--RSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNGV-VYTGSADG---RIRVWERSVVDHNKERKSRH 224 (357)
Q Consensus 153 ~~l~~~~~d--g~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d~---~i~i~d~~~~~~~~~~~~~~ 224 (357)
...+.|+.+ ..+..||..+++ .+..+ .....-.+++. -+++ .+.|+.++ .+..||.+. ...
T Consensus 320 ~iYviGG~~~~~sve~ydp~~n~W~~~~~l--~~~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~--------~~W 388 (480)
T PHA02790 320 KLYVVGGLPNPTSVERWFHGDAAWVNMPSL--LKPRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNH--------DQW 388 (480)
T ss_pred EEEEECCcCCCCceEEEECCCCeEEECCCC--CCCCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCC--------CEE
Confidence 555666643 357778876542 22222 11111112222 2454 56666543 466777651 122
Q ss_pred eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC-----C
Q 038568 225 MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD-----R 299 (357)
Q Consensus 225 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d-----g 299 (357)
.....+....... +++ .-++++.+.| |.+.+||.++++ ......+.............+...+.||.+ .
T Consensus 389 ~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~-W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~ 462 (480)
T PHA02790 389 QFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNT-WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYID 462 (480)
T ss_pred EeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCc-EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccc
Confidence 2222221111111 222 2356666666 357789887653 223333322233344456667777777754 3
Q ss_pred eEEEeeCCCC
Q 038568 300 TVRIWQRGKE 309 (357)
Q Consensus 300 ~i~vw~~~~~ 309 (357)
.+..||..++
T Consensus 463 ~ve~Yd~~~~ 472 (480)
T PHA02790 463 TIEVYNNRTY 472 (480)
T ss_pred eEEEEECCCC
Confidence 5667777664
No 422
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=2.3 Score=34.14 Aligned_cols=256 Identities=11% Similarity=0.087 Sum_probs=134.6
Q ss_pred cccccccccccceecccccCCCCCCCccceeEEEEecceEEEeeCC-ceEEEeccCCc--cccceeccccCCCCceEEEE
Q 038568 3 HLHSVSSEAFKHHCIASLKIPSPDPHHMIISCLAVHNSLLYAASLN-EINVFDLISDY--SHVDTFSNDLSSSGSVKSIT 79 (357)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~h~~~i~~~~~s~~~l~t~~~d-~i~iw~~~~~~--~~~~~~~~~~~~~~~v~~l~ 79 (357)
+++++.-..|.......+-. -.+--.++..+|++..++..| -..+.|+.+.. +....+.. ....-..++
T Consensus 107 GL~IvDIS~P~sP~~~~~ln-----t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~---~~~d~~~v~ 178 (370)
T COG5276 107 GLRIVDISTPDSPTLIGFLN-----TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL---PGGDTHDVA 178 (370)
T ss_pred ceEEEeccCCCCcceecccc-----CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeecc---CCCCceeEE
Confidence 45555544444333333321 335567777789999999977 88888883322 23333443 444557888
Q ss_pred EecCceEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEe
Q 038568 80 FHITKIFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVS 159 (357)
Q Consensus 80 ~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~ 159 (357)
.+.+.-..+..|+-+.+-|+........+... .....+.++..++++....-
T Consensus 179 ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~----------------------------n~g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 179 ISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY----------------------------NTGPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred EecCeEEEEEeCCCeEEEEccCCCCCeEEEEE----------------------------ecCCceEEEEecCCeeEEEE
Confidence 88888777788899999999877655444332 11236777888885555555
Q ss_pred cCCeEEEEEcCcchhhhhccccccccEEEE---EEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccc
Q 038568 160 WDRSFKIWNASNYKCLESVNKAHEDAVNAV---VVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRST 236 (357)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~---~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
.+.-+.+-|..+.+....+-.-....+.++ .. ++.+......+.-+.+.|+.... .......+......
T Consensus 231 y~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~gl~~idisnp~-------spfl~ss~~t~g~~ 302 (370)
T COG5276 231 YDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKGLPIIDISNPP-------SPFLSSSLDTAGYQ 302 (370)
T ss_pred cccceEEEecCCCCCceEeeccccCCcccccceec-ccceeeeeccccCceeEeccCCC-------CCchhccccCCCcc
Confidence 555677778776664444311122222222 33 23355555556666677765110 11111111111112
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeC
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQR 306 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~ 306 (357)
-..+... +.++..+..+ ...+-+....+....... ......-.++....+.+.+...++-+.+|+.
T Consensus 303 a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~~g-~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 303 AAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKRPG-RPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccceEEe--cCeeEeccCC-ceEEEeCCChhhcccccC-cceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 2333332 3455554444 344444443221111000 0001111233444457777777888888875
No 423
>PHA02790 Kelch-like protein; Provisional
Probab=94.27 E-value=3.7 Score=36.50 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=79.9
Q ss_pred CeEEEEecCC-----eEEEEEcCcchh--hhhccccccccEEEEEEecCCe-EEEEeCC--CeEEEEEcccccccccccc
Q 038568 153 GLMYSVSWDR-----SFKIWNASNYKC--LESVNKAHEDAVNAVVVSDNGV-VYTGSAD--GRIRVWERSVVDHNKERKS 222 (357)
Q Consensus 153 ~~l~~~~~dg-----~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d--~~i~i~d~~~~~~~~~~~~ 222 (357)
..++.|+.++ .+..||..+.+- +..+ .....-.+++. -++. .+.|+.+ ..+..||.. ..
T Consensus 273 ~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m--~~~r~~~~~v~-~~~~iYviGG~~~~~sve~ydp~--------~n 341 (480)
T PHA02790 273 VVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPM--NSPRLYASGVP-ANNKLYVVGGLPNPTSVERWFHG--------DA 341 (480)
T ss_pred EEEEEcCCCCCCcCCeEEEEECCCCEEEECCCC--CchhhcceEEE-ECCEEEEECCcCCCCceEEEECC--------CC
Confidence 4556666543 466788776542 2222 11111122222 3554 5666653 356777754 11
Q ss_pred ceeeeeEeeccccceeEEEEecCCCEEEEEecCC---eEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC
Q 038568 223 RHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDR---WIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR 299 (357)
Q Consensus 223 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg 299 (357)
.......+.........+ .-+|++.+.|+.++ .+..||.++.+ ......+.............+...+.|+
T Consensus 342 ~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~~~~~~IYv~GG--- 415 (480)
T PHA02790 342 AWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCALVFGRRLFLVGR--- 415 (480)
T ss_pred eEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEEEECCEEEEECC---
Confidence 222222222111111112 23577777777553 47788887543 2222222111122233455555666664
Q ss_pred eEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 300 TVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
.+.+||.+++ .+..+..+....... +++. -+++ +.+.||.+
T Consensus 416 ~~e~ydp~~~-~W~~~~~m~~~r~~~-~~~v-~~~~-------IYviGG~~ 456 (480)
T PHA02790 416 NAEFYCESSN-TWTLIDDPIYPRDNP-ELII-VDNK-------LLLIGGFY 456 (480)
T ss_pred ceEEecCCCC-cEeEcCCCCCCcccc-EEEE-ECCE-------EEEECCcC
Confidence 4778998765 355444433222222 2222 3444 77777754
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.21 E-value=4.8 Score=37.56 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=53.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEeccc----------CCceeeeeec--------cCCccceEEEeecCc-----e
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERER----------DHRMVFAEAL--------WGHTGALLCLINVGD-----L 291 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~----------~~~~~~~~~~--------~~~~~~v~~~~~~~~-----~ 291 (357)
-.|..+.++|+|++|+..+..| |.|-.+.. ++.....+.. ..+...|..+.|+|. .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688999999999999988876 54544421 1110011111 134457788899864 8
Q ss_pred EEEecCCCeEEEeeCCCCcceeeee
Q 038568 292 LASGSADRTVRIWQRGKENCYRCMA 316 (357)
Q Consensus 292 l~~~~~dg~i~vw~~~~~~~~~~~~ 316 (357)
|+.=.+|+++|+||+........+.
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 8888999999999998754333333
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.12 E-value=2.4 Score=39.43 Aligned_cols=86 Identities=12% Similarity=0.031 Sum_probs=51.5
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEEEccc-cccc---cccccceeeeeE-------eeccccceeEEEEecC---CC
Q 038568 183 EDAVNAVVVSDNGV-VYTGSADGRIRVWERSV-VDHN---KERKSRHMLVTT-------LVKHRSTVNALALNGD---GS 247 (357)
Q Consensus 183 ~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~---~~ 247 (357)
.-.|..+.++|+|. ++..|. ..|.|..+.. .... ..+.....+... .......|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34688899999995 555555 4455555431 1100 001111111110 1133457889999995 57
Q ss_pred EEEEEecCCeEEEEecccCCce
Q 038568 248 LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 248 ~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
.|++-..|+.+|+||+.....+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCC
Confidence 8999999999999999865543
No 426
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=2.5 Score=41.03 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=88.3
Q ss_pred EEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe-cC-C-------eEEEEeCCCeEEEEEccccccccccccceee
Q 038568 156 YSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS-DN-G-------VVYTGSADGRIRVWERSVVDHNKERKSRHML 226 (357)
Q Consensus 156 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~-~-------~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 226 (357)
+-.+.|+.+.+|+.+++.....+ .+....|..+..- |. | ++++.+.--.|.++-+...+...... ....
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~-d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~-~f~~ 170 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEY-DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELS-IFNT 170 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccc-cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccc-cccc
Confidence 34456889999999997777777 6666666666543 21 1 35555555667777665222211111 0111
Q ss_pred eeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc----cC---C---ce-----------eeeeecc-CCccceEE
Q 038568 227 VTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE----RD---H---RM-----------VFAEALW-GHTGALLC 284 (357)
Q Consensus 227 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~---~---~~-----------~~~~~~~-~~~~~v~~ 284 (357)
...+......|.++....+|+.+++|- || .+|.+. .+ + .+ ..+..+. .+..+|..
T Consensus 171 ~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 171 SFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred ceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 122233356788999777888777764 55 455442 10 0 00 0011122 56678888
Q ss_pred EeecCc--eEEEecCCCeEEEeeCCC
Q 038568 285 LINVGD--LLASGSADRTVRIWQRGK 308 (357)
Q Consensus 285 ~~~~~~--~l~~~~~dg~i~vw~~~~ 308 (357)
++.+.. .+.+-+..|+|.+|++..
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 888765 888999999999999976
No 427
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.87 E-value=2.7 Score=33.54 Aligned_cols=210 Identities=13% Similarity=0.169 Sum_probs=107.9
Q ss_pred CCCceEEEEEecCc---eEEeecCCe-EEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEE
Q 038568 71 SSGSVKSITFHITK---IFTAHQDCK-IRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVS 146 (357)
Q Consensus 71 ~~~~v~~l~~~~~~---l~~~~~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 146 (357)
-...-..|+|+|.. ++.+-.-|+ ..++|.+..+....+..... +-|.+|.
T Consensus 66 lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~----------------------RHfyGHG---- 119 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG----------------------RHFYGHG---- 119 (366)
T ss_pred cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccC----------------------ceeeccc----
Confidence 34455678888764 666666666 57889888876655543321 2222332
Q ss_pred EEEEec--CeEEEEec-----CCeEEEEEcCcc-hhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEE-Eccccccc
Q 038568 147 DLVVKQ--GLMYSVSW-----DRSFKIWNASNY-KCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVW-ERSVVDHN 217 (357)
Q Consensus 147 ~~~~~~--~~l~~~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~-d~~~~~~~ 217 (357)
.|++ .+|+..-. -|.|-+||.+.+ +.+..+ ..|.-....+.+.+||++++... |-|..- |....+.+
T Consensus 120 --vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvan-GGIethpdfgR~~lN 195 (366)
T COG3490 120 --VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVAN-GGIETHPDFGRTELN 195 (366)
T ss_pred --ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeC-CceecccccCccccc
Confidence 4666 44444433 377999998753 345556 66777778899999996444332 333333 21110000
Q ss_pred c-ccccceeee----------eEee--ccccceeEEEEecCCCEEEEEecCCe-----EEEEecccCCceeeeeec----
Q 038568 218 K-ERKSRHMLV----------TTLV--KHRSTVNALALNGDGSLLFSGGCDRW-----IVVWERERDHRMVFAEAL---- 275 (357)
Q Consensus 218 ~-~~~~~~~~~----------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~~~~~~~---- 275 (357)
- ..+.....+ .++. .+...+..++..+||..++.+-..|. -.+=-...++.+..+...
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~ 275 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT 275 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence 0 001111111 1111 34456788888888876665533321 111111122222111110
Q ss_pred cCCccceEEEeecCc---eEEEecCCCeEEEeeCCCCc
Q 038568 276 WGHTGALLCLINVGD---LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 276 ~~~~~~v~~~~~~~~---~l~~~~~dg~i~vw~~~~~~ 310 (357)
......+-+++.+.+ ..+|+-..+...+||..++.
T Consensus 276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 011223444555432 44555567788899999983
No 428
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.73 E-value=0.17 Score=46.53 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=105.3
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEecCC--eEEEEeCCCeEEEEEccccccccccccceeeeeEeecccccee
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG--VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVN 238 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 238 (357)
.+-+++-+..+......+..+..+.+-.+.|.... ++. -.-|.+.+||+...+.+- ...-.+........++.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~i---q~~l~v~~~~p~gs~~~ 184 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEI---QPQLEVTPITPYGSDPQ 184 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccc---ccceEEeecCcCCCCcc
Confidence 45577777665443334446677788888875433 222 334678899987322111 01111222223344556
Q ss_pred EEEEec---CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccce-------------EEEeecCceEEEecCCCeEE
Q 038568 239 ALALNG---DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGAL-------------LCLINVGDLLASGSADRTVR 302 (357)
Q Consensus 239 ~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~l~~~~~dg~i~ 302 (357)
-+.|.| +.-++..+-.++.|++...++... ..+.+|...+ -.++.+|..++.++.||.++
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 677766 566888888899999887765432 2233354443 34556667899999999998
Q ss_pred EeeCCC--CcceeeeeeecCCc-CceEEEEEeeCCC-CCCCCe-EEEEEcC-CCCeEEecC
Q 038568 303 IWQRGK--ENCYRCMAFLEGHE-KPVKSLVAISSSS-SASNGI-VSIGSGS-LNGEIKVWD 357 (357)
Q Consensus 303 vw~~~~--~~~~~~~~~~~~h~-~~v~~~~~~~~~~-~~~~~~-~~l~s~~-~dg~v~~wd 357 (357)
.|.+.- ....+++...+.|. ++-.|.-++.... ..+.+. .++++++ ...-+++|.
T Consensus 261 f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 887642 22345667777777 3433333433322 112222 1344444 445577774
No 429
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.62 E-value=0.68 Score=35.98 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=48.2
Q ss_pred cceEEEeecCceEEEecCCCeEEEeeCCCCcceeee----eeec-------CCcCceEEEEEeeCCCCCCCCeEEEEEcC
Q 038568 280 GALLCLINVGDLLASGSADRTVRIWQRGKENCYRCM----AFLE-------GHEKPVKSLVAISSSSSASNGIVSIGSGS 348 (357)
Q Consensus 280 ~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~-------~h~~~v~~~~~~~~~~~~~~~~~~l~s~~ 348 (357)
.++..+...+++|++-..+|.+++||+.+.+..-.- ..+. .....|..+....+|. -+++-+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-------PiV~ls 85 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-------PIVTLS 85 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-------EEEEEe
Confidence 355667788889999999999999999986421110 0111 3556788888888876 566554
Q ss_pred CCCeEEecC
Q 038568 349 LNGEIKVWD 357 (357)
Q Consensus 349 ~dg~v~~wd 357 (357)
+|....||
T Consensus 86 -ng~~y~y~ 93 (219)
T PF07569_consen 86 -NGDSYSYS 93 (219)
T ss_pred -CCCEEEec
Confidence 46677765
No 430
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.58 E-value=4.5 Score=35.13 Aligned_cols=195 Identities=10% Similarity=0.061 Sum_probs=94.1
Q ss_pred eEEEEEecCc---eEEeecC----CeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEE
Q 038568 75 VKSITFHITK---IFTAHQD----CKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSD 147 (357)
Q Consensus 75 v~~l~~~~~~---l~~~~~d----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (357)
+....++|++ +++.+.. ..+++.|+.+++.....-. ......
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-------------------------------~~~~~~ 174 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-------------------------------NPKFSS 174 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-------------------------------EEESEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-------------------------------ccccce
Confidence 3356788887 3333333 3599999999854332110 011123
Q ss_pred EEEec--CeEEEEec-----------CCeEEEEEcCcchhh--hhcccccccc-EEEEEEecCCe--EEEEeC--C-CeE
Q 038568 148 LVVKQ--GLMYSVSW-----------DRSFKIWNASNYKCL--ESVNKAHEDA-VNAVVVSDNGV--VYTGSA--D-GRI 206 (357)
Q Consensus 148 ~~~~~--~~l~~~~~-----------dg~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~--l~~~~~--d-~~i 206 (357)
+.|.+ ..|+.... ...|..|.+.+...- ..+....... ...+..++++. ++.... + ..+
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v 254 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEV 254 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEE
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeE
Confidence 77877 34433332 223788888765433 2231222223 66788899883 333333 2 457
Q ss_pred EEEEccccccccccccceeeeeEeeccccce-eEEEEecCCCEEEEEe---cCCeEEEEecccCCceeeeeeccCCcc--
Q 038568 207 RVWERSVVDHNKERKSRHMLVTTLVKHRSTV-NALALNGDGSLLFSGG---CDRWIVVWERERDHRMVFAEALWGHTG-- 280 (357)
Q Consensus 207 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~-- 280 (357)
.+.|+.. ..........+......+ ..+... .+.+++... .++.|...++...........+..+..
T Consensus 255 ~~~d~~~------~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~ 327 (414)
T PF02897_consen 255 YLLDLDD------GGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDV 327 (414)
T ss_dssp EEEECCC------TTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSE
T ss_pred EEEeccc------cCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCce
Confidence 7777761 100011222222233333 333333 444444332 246777778876653111213333433
Q ss_pred ceEEEeecCc-eEEEecCCC--eEEEeeCC
Q 038568 281 ALLCLINVGD-LLASGSADR--TVRIWQRG 307 (357)
Q Consensus 281 ~v~~~~~~~~-~l~~~~~dg--~i~vw~~~ 307 (357)
.+..+...++ +++....++ .|+++++.
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 5666666666 444444444 67888888
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.55 E-value=2.3 Score=36.93 Aligned_cols=124 Identities=11% Similarity=0.087 Sum_probs=74.4
Q ss_pred EEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCC-------EEEEEecCCeEEEEecccCCce
Q 038568 197 VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGS-------LLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 197 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
+..|+....++-.|+. .++.+.....|... -+.|.|..+ .-++|-.+..|.-.|.+-....
T Consensus 483 ~~dg~~~~kLykmDIE----------rGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK 550 (776)
T COG5167 483 YLDGGERDKLYKMDIE----------RGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK 550 (776)
T ss_pred EecCCCcccceeeecc----------cceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence 5556666777777776 56677777766554 467777422 2344555666666666643321
Q ss_pred eeeee---ccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCC
Q 038568 270 VFAEA---LWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 270 ~~~~~---~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
..... ..+....-...+-...++|+++..|-|++||--.. +....+.+-...|..+....+|.
T Consensus 551 i~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk 616 (776)
T COG5167 551 IKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGK 616 (776)
T ss_pred eeeeeehhccccccccccccccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCc
Confidence 11111 11111111222233449999999999999996543 33344566778899999999987
No 432
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.44 E-value=5.3 Score=35.51 Aligned_cols=120 Identities=7% Similarity=0.116 Sum_probs=63.4
Q ss_pred CCCceEEEEEecCc------eEEeecCCeEEEEecCCcc--ceeeeeecCccccceeeeecCCCeEEEeccccccccccc
Q 038568 71 SSGSVKSITFHITK------IFTAHQDCKIRVWKITASR--QHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHW 142 (357)
Q Consensus 71 ~~~~v~~l~~~~~~------l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (357)
.-+.|..+.|.|-. |++......|.||.+.... .-+.+..... .+-+...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtc----------------------Ei~e~~p 112 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTC----------------------EIREPFP 112 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeee----------------------eccCCcc
Confidence 44578999999852 7777778999999986221 1111100000 0000000
Q ss_pred ccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCC-eE-EEEeCCCeEEEEEcc
Q 038568 143 DAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VV-YTGSADGRIRVWERS 212 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l-~~~~~d~~i~i~d~~ 212 (357)
---..+.|+| ..|+.-.....-.+++++.....-.......+.|.|.+|.+|| +| ++.+..=.-++||-.
T Consensus 113 vLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 113 VLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 1113466888 3444433333334455543322222213567889999999999 43 334444556788853
No 433
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.25 E-value=3.8 Score=33.23 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=71.9
Q ss_pred CCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEe------cCCeEEEEecccCCceeeeee-c
Q 038568 203 DGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGG------CDRWIVVWERERDHRMVFAEA-L 275 (357)
Q Consensus 203 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~-~ 275 (357)
-..|++||.. ..+-...-.+-.+.|+.|.|..+.++++.|. ....+..||+.+..- ..... .
T Consensus 15 C~~lC~yd~~----------~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~ 83 (281)
T PF12768_consen 15 CPGLCLYDTD----------NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGS 83 (281)
T ss_pred CCEEEEEECC----------CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcc
Confidence 3468999976 1222222223567899999986666666664 345688899886542 11111 1
Q ss_pred -cCCccceEEEeec---Cc-eEEEec-CCC--eEEEeeCCCCcceeeeee-ecCCcCceEEEEEeeC-C------CCCCC
Q 038568 276 -WGHTGALLCLINV---GD-LLASGS-ADR--TVRIWQRGKENCYRCMAF-LEGHEKPVKSLVAISS-S------SSASN 339 (357)
Q Consensus 276 -~~~~~~v~~~~~~---~~-~l~~~~-~dg--~i~vw~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~-~------~~~~~ 339 (357)
..-.+++..+.+. .. ..++|. .+| .|..||=.+ +..+.. .......|.++.+-|- . .....
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~---W~~i~~~~~~~~t~I~~l~~~~l~~~~~~~~~~~~~ 160 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS---WSSIGSDILGSGTTIRGLQVLPLNSSSHDNSSLFDS 160 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc---eEeccccccCCCCEEEEEEEEeccccccccccccCC
Confidence 1124667777663 33 444443 333 455564433 444444 3333567888877665 1 12233
Q ss_pred CeEEEEEcC
Q 038568 340 GIVSIGSGS 348 (357)
Q Consensus 340 ~~~~l~s~~ 348 (357)
+..++++|.
T Consensus 161 ~~~Llv~G~ 169 (281)
T PF12768_consen 161 DQVLLVTGS 169 (281)
T ss_pred CcEEEEEee
Confidence 445666665
No 434
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.14 E-value=5.1 Score=34.40 Aligned_cols=188 Identities=8% Similarity=0.073 Sum_probs=79.1
Q ss_pred CeEEEEe-cCCeEEEEEcCcch----hhhhcc------ccccccEEEEEEecCC-eEEEEe--C----CCeEEEEEcccc
Q 038568 153 GLMYSVS-WDRSFKIWNASNYK----CLESVN------KAHEDAVNAVVVSDNG-VVYTGS--A----DGRIRVWERSVV 214 (357)
Q Consensus 153 ~~l~~~~-~dg~i~iwd~~~~~----~~~~~~------~~~~~~v~~~~~~~~~-~l~~~~--~----d~~i~i~d~~~~ 214 (357)
++|+..+ .++.|.|.|+.+.. ..+.+. ...-.....+..-|+| .++++- . -|.+.++|-+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~-- 165 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE-- 165 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT--
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc--
Confidence 4555554 78899999987432 222221 0011122233344677 444432 2 2456666654
Q ss_pred ccccccccceeeeeEeecc---ccceeEEEEecCCCEEEEEec--------------------CCeEEEEecccCCceee
Q 038568 215 DHNKERKSRHMLVTTLVKH---RSTVNALALNGDGSLLFSGGC--------------------DRWIVVWERERDHRMVF 271 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~vwd~~~~~~~~~ 271 (357)
........... ...-+.+.|.|..+.+++... ..++.+||+.+.+..+.
T Consensus 166 --------tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 166 --------TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp --------T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred --------cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 12222222221 223456777887777777532 35799999998875544
Q ss_pred eeeccCCccceEEEee--cCc---eEEEecCCCeEEEeeCCCCcceeeeeeecC-------------------CcCceEE
Q 038568 272 AEALWGHTGALLCLIN--VGD---LLASGSADRTVRIWQRGKENCYRCMAFLEG-------------------HEKPVKS 327 (357)
Q Consensus 272 ~~~~~~~~~~v~~~~~--~~~---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-------------------h~~~v~~ 327 (357)
+.. .......+.+.| +|+ -++.+.-.+.|..|--.....++....+.- -..-|+.
T Consensus 238 idL-g~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitD 316 (461)
T PF05694_consen 238 IDL-GEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITD 316 (461)
T ss_dssp EES--TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------
T ss_pred Eec-CCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEe
Confidence 432 211223444544 443 333333455555554422222332222211 0245799
Q ss_pred EEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 328 LVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
|..|.|.+ .+.+++=.+|.||.||
T Consensus 317 I~iSlDDr------fLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 317 ILISLDDR------FLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEE-TTS-------EEEEEETTTTEEEEEE
T ss_pred EEEccCCC------EEEEEcccCCcEEEEe
Confidence 99999998 3445666899999886
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.86 E-value=0.014 Score=49.18 Aligned_cols=143 Identities=12% Similarity=0.144 Sum_probs=92.3
Q ss_pred cEEEEEEecCC-eEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEE-EEecCCeEEEEe
Q 038568 185 AVNAVVVSDNG-VVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLF-SGGCDRWIVVWE 262 (357)
Q Consensus 185 ~v~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd 262 (357)
......|.+++ -++.++.+..+..||-. .+..... ...+....++|+.++..++ .+-..+.+.+||
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a-----------gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA-----------GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh-----------cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 33455677777 48889999999999854 1222111 2234456788888776544 455678899999
Q ss_pred cccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCC
Q 038568 263 RERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNG 340 (357)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 340 (357)
+.+.... .+..-..|.... +.|++. .++.+...|.+.+++..+. +.+.....|...+++++|.+.+
T Consensus 104 ~n~eytq-qLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgts---R~iiv~Gkh~RRgtq~av~lEd------ 171 (615)
T KOG2247|consen 104 VNSEYTQ-QLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTS---RRIIVMGKHQRRGTQIAVTLED------ 171 (615)
T ss_pred hhhhhHH-HHhccCcchHHH--HhhccCCccccccccccceEEEeccch---hhhhhhcccccceeEEEecccc------
Confidence 9865421 111111223333 445543 7788888999999998875 4444444599999999999987
Q ss_pred eEEEEEcCCCCeE
Q 038568 341 IVSIGSGSLNGEI 353 (357)
Q Consensus 341 ~~~l~s~~~dg~v 353 (357)
+.+.++.|..+
T Consensus 172 --~vil~dcd~~L 182 (615)
T KOG2247|consen 172 --YVILCDCDNTL 182 (615)
T ss_pred --eeeecCcHHHH
Confidence 56667666543
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.79 E-value=5.2 Score=33.56 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=56.2
Q ss_pred cEEEEEEec-CeEEEEecCCeEEEEEcCcchh---hh---hccccccccEEEEEEecC----CeEEEEeC-------CC-
Q 038568 144 AVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKC---LE---SVNKAHEDAVNAVVVSDN----GVVYTGSA-------DG- 204 (357)
Q Consensus 144 ~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~---~~---~~~~~~~~~v~~~~~~~~----~~l~~~~~-------d~- 204 (357)
.-++|+|.| ..++.+...|.|++++. .+.. +. .+..........++++|+ ++|.+... ..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 356889999 67777788999999993 3322 11 121345567899999995 54433333 12
Q ss_pred -eEEEEEccccccccccccceeeeeEeec---cccceeEEEEecCCCEEEEEecC
Q 038568 205 -RIRVWERSVVDHNKERKSRHMLVTTLVK---HRSTVNALALNGDGSLLFSGGCD 255 (357)
Q Consensus 205 -~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d 255 (357)
.|.-|..... ..........+..... ....-..|.|.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~--~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDG--DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETT--SCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCC--ccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 3333333311 0011111222222222 23445679999999766655543
No 437
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.75 E-value=6.4 Score=34.51 Aligned_cols=25 Identities=4% Similarity=-0.028 Sum_probs=17.1
Q ss_pred cEEEEEEec--CeEEEEecCCeEEEEE
Q 038568 144 AVSDLVVKQ--GLMYSVSWDRSFKIWN 168 (357)
Q Consensus 144 ~v~~~~~~~--~~l~~~~~dg~i~iwd 168 (357)
.|..+..++ ..++..+.+|.+.++=
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEc
Confidence 566677777 6777777788665543
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.62 E-value=1.4 Score=32.76 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=26.7
Q ss_pred CceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 323 KPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
..|.+++|+|.|- ...+.-+|++...+|.|.||.
T Consensus 86 ~~vv~~aWSP~Gl-~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 86 SQVVSAAWSPSGL-GPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred ccEEEEEECCCCC-CCCCceEEEEEcCCCeEEEEe
Confidence 3799999999874 233445899999999999983
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.60 E-value=0.52 Score=25.33 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=24.3
Q ss_pred ccEEEEEEec-----CeEEEEecCCeEEEEEcCc
Q 038568 143 DAVSDLVVKQ-----GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 143 ~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~ 171 (357)
+.|.++.|+| ++|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999997 5788888889999999985
No 440
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.10 E-value=7.2 Score=33.64 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=51.4
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEE----ee-------------cCc--
Q 038568 230 LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCL----IN-------------VGD-- 290 (357)
Q Consensus 230 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~----~~-------------~~~-- 290 (357)
+......+.++..+|++++.++...=|+|.++|+.++.. ++..+|...+-..+ .. .++
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v---vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV---VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh---hhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 334445688999999999999988889999999987753 23333332221111 00 011
Q ss_pred --eEEEecCCCeEEEeeCCCCc
Q 038568 291 --LLASGSADRTVRIWQRGKEN 310 (357)
Q Consensus 291 --~l~~~~~dg~i~vw~~~~~~ 310 (357)
+++-+-.-|.|.||.++++.
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCC
Confidence 44556678999999999873
No 441
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.08 E-value=6.7 Score=33.47 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=13.5
Q ss_pred ceeEEEEecCCCEEEEEe
Q 038568 236 TVNALALNGDGSLLFSGG 253 (357)
Q Consensus 236 ~v~~~~~~~~~~~l~~~~ 253 (357)
....++|+|+|+++++-.
T Consensus 185 np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 185 NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCccceECCCCCEEEEcc
Confidence 356899999998776543
No 442
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=92.00 E-value=4.7 Score=36.97 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=51.1
Q ss_pred CccceeEEEEe--cceEEEeeCC-ceEEEeccCCccccceeccccCCCCceEEEEEecCceEEeecCCeEEEEecCC
Q 038568 28 HHMIISCLAVH--NSLLYAASLN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITKIFTAHQDCKIRVWKITA 101 (357)
Q Consensus 28 h~~~i~~~~~s--~~~l~t~~~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~l~~~~~d~~i~vwd~~~ 101 (357)
....++++.-. |+-++.+..| .|++|++ .+.+.-+... ...+-..+.|...+|+++..|..+.-|.-+.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~-~~r~qski~~----~~~p~~nlv~tnhgl~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNF-IPRRQSKICE----EAKPKENLVFTNHGLVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEee-cccchhhhhh----hcCCccceeeeccceEEEeccchhheeeccC
Confidence 44567777766 8889999999 9999999 5544433333 3345567888888899999999998887543
No 443
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.92 E-value=8 Score=33.76 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=25.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEeccc
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
..|.++...+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999999889999999999999999975
No 444
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.26 E-value=6.4 Score=31.37 Aligned_cols=199 Identities=11% Similarity=0.037 Sum_probs=103.5
Q ss_pred cceecccccCCCCCCCc--cceeEEEE-e-cceEEEee-CC--ceEEEeccCCccccceeccccCCCCceEEEEEecCc-
Q 038568 13 KHHCIASLKIPSPDPHH--MIISCLAV-H-NSLLYAAS-LN--EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK- 84 (357)
Q Consensus 13 ~~~~~~~~~~~~g~~h~--~~i~~~~~-s-~~~l~t~~-~d--~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~- 84 (357)
..+.++++. |+ .-...+.| . |.++-+.+ .+ .|+.+|+ ++++..+...- +..--=-.++...+.
T Consensus 32 ~~~vv~~yp------Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~-~tg~~~~~~~l--~~~~FgEGit~~~d~l 102 (264)
T PF05096_consen 32 SYEVVETYP------HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDL-ETGKVLQSVPL--PPRYFGEGITILGDKL 102 (264)
T ss_dssp EEEEEEEEE--------TT-EEEEEEEEETTEEEEEECSTTEEEEEEEET-TTSSEEEEEE---TTT--EEEEEEETTEE
T ss_pred eeEEEEECC------CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEEC-CCCcEEEEEEC--CccccceeEEEECCEE
Confidence 345555555 53 44667888 4 55555555 33 9999999 88877665543 122222356666676
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
..-.=.++...+||..+-+....+.- ...=+.++...+.|+.......|
T Consensus 103 ~qLTWk~~~~f~yd~~tl~~~~~~~y-------------------------------~~EGWGLt~dg~~Li~SDGS~~L 151 (264)
T PF05096_consen 103 YQLTWKEGTGFVYDPNTLKKIGTFPY-------------------------------PGEGWGLTSDGKRLIMSDGSSRL 151 (264)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEE--------------------------------SSS--EEEECSSCEEEE-SSSEE
T ss_pred EEEEecCCeEEEEccccceEEEEEec-------------------------------CCcceEEEcCCCEEEEECCccce
Confidence 44445678999999987665544421 23445666656666666667789
Q ss_pred EEEEcCcchhhhhcccc----ccccEEEEEEecCCe-EEEEeCCCeEEEEEccccccccccccceeeeeE------eecc
Q 038568 165 KIWNASNYKCLESVNKA----HEDAVNAVVVSDNGV-VYTGSADGRIRVWERSVVDHNKERKSRHMLVTT------LVKH 233 (357)
Q Consensus 165 ~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~ 233 (357)
.++|..+.+....+.-. .-..++.+.+. +|. .+=.-....|...|..++.....-... ..... ....
T Consensus 152 ~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls-~L~~~~~~~~~~~~~ 229 (264)
T PF05096_consen 152 YFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLS-GLRPEVGRDKSRQPD 229 (264)
T ss_dssp EEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-H-HHHHHHTSTTST--T
T ss_pred EEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhh-Hhhhccccccccccc
Confidence 99999887766655211 12245566665 443 333344555666666522111000000 00000 0011
Q ss_pred ccceeEEEEecCCCEEEEEe
Q 038568 234 RSTVNALALNGDGSLLFSGG 253 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~ 253 (357)
..-.+.|+++|..+.|+..+
T Consensus 230 ~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 230 DDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TS-EEEEEEETTTTEEEEEE
T ss_pred CCeeEeEeEeCCCCEEEEEe
Confidence 34578999999766555444
No 445
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.16 E-value=11 Score=33.63 Aligned_cols=270 Identities=11% Similarity=0.093 Sum_probs=134.5
Q ss_pred CccceeEEEEe-cceEEEeeCCceEEEeccCCccccceeccccCCCCceEEEEEecCc-eEEeecCCeEEEEecCCccce
Q 038568 28 HHMIISCLAVH-NSLLYAASLNEINVFDLISDYSHVDTFSNDLSSSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQH 105 (357)
Q Consensus 28 h~~~i~~~~~s-~~~l~t~~~d~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~ 105 (357)
-..+|.++.++ ...+..|+.|-+..||. .+++.++.-.. +...+|..+.-.-.+ |..|+.+| +.+.+.+..+..
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dGL~~fd~-~~gkalql~s~--~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~s 238 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDGLSYFDA-GRGKALQLASP--PLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRAS 238 (671)
T ss_pred cCccceeeeeeccCcEEEecCCcceEEcc-ccceEEEcCCC--cchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcccc
Confidence 45678889999 77888888887888888 66666554443 133566666666544 88888766 566665542211
Q ss_pred eeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccc--cc
Q 038568 106 QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNK--AH 182 (357)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~ 182 (357)
..... -....|..+.-.. ..+-.|+..|..+. ............. ..
T Consensus 239 n~~~~-----------------------------lp~~~I~ll~qD~qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~ 288 (671)
T COG3292 239 NWGPM-----------------------------LPSGNILLLVQDAQGELWIGTENGLWRT-RLPRQGLQIPLSKMHLG 288 (671)
T ss_pred ccCCC-----------------------------CcchheeeeecccCCCEEEeecccceeE-ecCCCCccccccccCCc
Confidence 11111 1223444444444 66777777664433 2222222111111 12
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeecccc-ceeEEEEec--CCCEEEEEecCCeEE
Q 038568 183 EDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRS-TVNALALNG--DGSLLFSGGCDRWIV 259 (357)
Q Consensus 183 ~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~l~~~~~dg~i~ 259 (357)
-+.|.++....+|.+-++..++.+++-+-. ......+....+ .+-..+..| .+..+.-...-|.+.
T Consensus 289 ~S~vnsL~~D~dGsLWv~t~~giv~~~~a~-----------w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~ 357 (671)
T COG3292 289 VSTVNSLWLDTDGSLWVGTYGGIVRYLTAD-----------WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELM 357 (671)
T ss_pred cccccceeeccCCCEeeeccCceEEEecch-----------hhheeeeecCCCchhhhhccCchhcccceeeccccceEE
Confidence 345677777778889999888887765432 111111111111 111111122 112222222223333
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeec-CCcCceEEEEEeeCCCCC
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLE-GHEKPVKSLVAISSSSSA 337 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~ 337 (357)
+-+-.++..........+ ..|+...++.+ .+-.|+...-+..|+..+. +..+.... ...++|..+.=.|+++
T Consensus 358 van~stG~~v~sv~q~Rg--~nit~~~~d~~g~lWlgs~q~GLsrl~n~n~--~avlde~agl~ss~V~aived~dns-- 431 (671)
T COG3292 358 VANGSTGELVRSVHQLRG--MNITTTLEDSRGRLWLGSMQNGLSRLDNKNE--WAVLDEDAGLPSSEVSAIVEDPDNS-- 431 (671)
T ss_pred EecCCCCcEEEEeeeccc--cccchhhhccCCcEEEEecccchhhhccCCc--ccccccccCCcccceeeeeecCCCC--
Confidence 444444443333333322 22322223223 4555555534556665551 12222222 2356788887778775
Q ss_pred CCCeEEEEEcCCCCeEE
Q 038568 338 SNGIVSIGSGSLNGEIK 354 (357)
Q Consensus 338 ~~~~~~l~s~~~dg~v~ 354 (357)
|.-|+.+|.++
T Consensus 432 ------LWIGTs~Glvk 442 (671)
T COG3292 432 ------LWIGTSGGLVK 442 (671)
T ss_pred ------EEEeccCCeEe
Confidence 55666777665
No 446
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=91.00 E-value=11 Score=33.54 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=84.3
Q ss_pred CCCceEEEEEecCc-eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEE
Q 038568 71 SSGSVKSITFHITK-IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLV 149 (357)
Q Consensus 71 ~~~~v~~l~~~~~~-l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 149 (357)
...+|..+.+...+ +..|+.|| +..||..+++..+.... ....+|..+.
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~-----------------------------~~dk~I~al~ 212 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASP-----------------------------PLDKAINALI 212 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCC-----------------------------cchhhHHHHH
Confidence 34567777777666 77777766 55667666554332211 1113444444
Q ss_pred Eec-CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 150 VKQ-GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 150 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
-+- ..+..|+.+| +.+.+.+..+.......-....|..+.-..+|.+-.|+..|..+.--.+ ..-..+..
T Consensus 213 ~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~r--------q~Lq~~~~ 283 (671)
T COG3292 213 ADVQGRLWVGTDQG-VYLQEAEGWRASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPR--------QGLQIPLS 283 (671)
T ss_pred HHhcCcEEEEeccc-eEEEchhhccccccCCCCcchheeeeecccCCCEEEeecccceeEecCC--------CCcccccc
Confidence 444 6788888776 7777766533332221233455666666667778888888766543222 00111111
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWE 262 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 262 (357)
......+.|.++..+.+|. |.+++.++.+++-+
T Consensus 284 ~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 284 KMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred ccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence 1222235567777777775 66777777655543
No 447
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.63 E-value=9.7 Score=32.31 Aligned_cols=189 Identities=11% Similarity=-0.008 Sum_probs=85.0
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhccccc----------------cccEEEEEEecCC-eEEEE-e
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESVNKAH----------------EDAVNAVVVSDNG-VVYTG-S 201 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~-~l~~~-~ 201 (357)
...+....|+| +.++-. .++.|.+++..+++..+.-..+. -..-..+-|+||+ +|+.. .
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 35677888888 444444 46789999876653322111110 1123568899999 34433 3
Q ss_pred CCCeEEEEEccccccccc-------------cccc--------------eeeeeEe---eccccceeEEEEecCCCEEEE
Q 038568 202 ADGRIRVWERSVVDHNKE-------------RKSR--------------HMLVTTL---VKHRSTVNALALNGDGSLLFS 251 (357)
Q Consensus 202 ~d~~i~i~d~~~~~~~~~-------------~~~~--------------~~~~~~~---~~~~~~v~~~~~~~~~~~l~~ 251 (357)
.+..|..+.+........ +... ...+... ......+..+.|.++++.|+.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 444455444332211100 0000 0000000 122345678889898884443
Q ss_pred EecC-----CeEEEEecccCCceeeeeeccCCccce---EEEee---cCc-eEEEecCCCeEEEeeCCCCcceeeeeeec
Q 038568 252 GGCD-----RWIVVWERERDHRMVFAEALWGHTGAL---LCLIN---VGD-LLASGSADRTVRIWQRGKENCYRCMAFLE 319 (357)
Q Consensus 252 ~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v---~~~~~---~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 319 (357)
.-.+ -.+.+.|..++......... ....+ ....+ .++ +|.....||.-+|+-+.... .....+.
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~--~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT 276 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEET--SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLT 276 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEE--SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEec--CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccc--cceeccc
Confidence 3322 23666777665443222221 12222 12222 222 55555577765555443321 1133444
Q ss_pred CCcCceEE-EEEeeCCC
Q 038568 320 GHEKPVKS-LVAISSSS 335 (357)
Q Consensus 320 ~h~~~v~~-~~~~~~~~ 335 (357)
...-.|+. +.|+++++
T Consensus 277 ~G~~~V~~i~~~d~~~~ 293 (353)
T PF00930_consen 277 SGDWEVTSILGWDEDNN 293 (353)
T ss_dssp -SSS-EEEEEEEECTSS
T ss_pred cCceeecccceEcCCCC
Confidence 44555655 56666655
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.31 E-value=11 Score=32.48 Aligned_cols=110 Identities=6% Similarity=0.027 Sum_probs=64.1
Q ss_pred cccEEEEEEec-CeEEEEecCCeEEEEEcCcch-----hhhhcccc-ccccEEEEEEecCCeEEEEeCCCeEEEEEcccc
Q 038568 142 WDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYK-----CLESVNKA-HEDAVNAVVVSDNGVVYTGSADGRIRVWERSVV 214 (357)
Q Consensus 142 ~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 214 (357)
...+..+.+.+ ..++.++.+|.+.. ....++ ........ ....+.++.+.+++.++.++..|.+....-.
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~-- 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDG-- 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCC--
Confidence 45678888887 55666667776544 333333 12222111 2245888999988888888888887765421
Q ss_pred ccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 038568 215 DHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
....+.......-....+.+.|.++++.+++ +.+|.|.-|
T Consensus 357 ------G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 ------GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred ------CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 1122222211223456788998777665555 567776554
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.25 E-value=3.6 Score=30.61 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=24.6
Q ss_pred ccEEEEEEec--------CeEEEEecCCeEEEEEcCc
Q 038568 143 DAVSDLVVKQ--------GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 143 ~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~ 171 (357)
..+.+++|+| -+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4789999999 4788899999999998653
No 450
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.08 E-value=6.4 Score=31.58 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=62.9
Q ss_pred eEEEEecC-CCEEEEEecCCe-EEEEecccCCceeeeeeccC-CccceEEEeecCceEEEecCC-----CeEEEeeCCCC
Q 038568 238 NALALNGD-GSLLFSGGCDRW-IVVWERERDHRMVFAEALWG-HTGALLCLINVGDLLASGSAD-----RTVRIWQRGKE 309 (357)
Q Consensus 238 ~~~~~~~~-~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~d-----g~i~vw~~~~~ 309 (357)
..++|+|. .+-++.+-.-|+ ..++|....+.+.......+ |-..--+++.++.+|++.-.| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 35677773 345555555554 57888887766544432221 211123345555566655443 78999999965
Q ss_pred cceeeeeeecCCcCceEEEEEeeCCC
Q 038568 310 NCYRCMAFLEGHEKPVKSLVAISSSS 335 (357)
Q Consensus 310 ~~~~~~~~~~~h~~~v~~~~~~~~~~ 335 (357)
++.+.++..|.-.-..+.|.+|++
T Consensus 151 --fqrvgE~~t~GiGpHev~lm~DGr 174 (366)
T COG3490 151 --FQRVGEFSTHGIGPHEVTLMADGR 174 (366)
T ss_pred --cceecccccCCcCcceeEEecCCc
Confidence 677888999988888999999998
No 451
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.95 E-value=11 Score=32.10 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccc-cccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEee
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAH-EDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLV 231 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 231 (357)
..++.+..+|.|.-.|..+++.+....... ...+..-....+|.++.++.++.+..+|.+ .....-...
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~----------~G~~~W~~~ 138 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDAS----------TGTLVWSRN 138 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECC----------CCcEEEEEe
Confidence 677777889999999999888665441111 123333333348899999999988888875 222333322
Q ss_pred ccc-cceeEEEEecCCCEEEEEecCCeEEEEecccCCcee
Q 038568 232 KHR-STVNALALNGDGSLLFSGGCDRWIVVWERERDHRMV 270 (357)
Q Consensus 232 ~~~-~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 270 (357)
... -.+..-..-.++ .+..++.++.+...|..+++...
T Consensus 139 ~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W 177 (370)
T COG1520 139 VGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKW 177 (370)
T ss_pred cCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEE
Confidence 222 011111122233 34444467888888877776543
No 452
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=89.56 E-value=19 Score=34.12 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=42.4
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccc-------cEEEEEEec-----------------CCeEEEEeCCCeEEE
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHED-------AVNAVVVSD-----------------NGVVYTGSADGRIRV 208 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~-----------------~~~l~~~~~d~~i~i 208 (357)
+.++.++.++.|.-.|.++|+.+.++...... ....+.+.. +++++.++.|+.+.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 78888888999999999999988776321110 012222221 236888889999999
Q ss_pred EEcccc
Q 038568 209 WERSVV 214 (357)
Q Consensus 209 ~d~~~~ 214 (357)
.|.+++
T Consensus 275 LDA~TG 280 (764)
T TIGR03074 275 LDADTG 280 (764)
T ss_pred EECCCC
Confidence 998743
No 453
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.34 E-value=5.8 Score=27.80 Aligned_cols=63 Identities=5% Similarity=0.178 Sum_probs=40.3
Q ss_pred EEe--cceEEEeeCC-ceEEEeccCC--------ccccceeccccCCCCceEEEEEec---C--c--eEEeecCCeEEEE
Q 038568 36 AVH--NSLLYAASLN-EINVFDLISD--------YSHVDTFSNDLSSSGSVKSITFHI---T--K--IFTAHQDCKIRVW 97 (357)
Q Consensus 36 ~~s--~~~l~t~~~d-~i~iw~~~~~--------~~~~~~~~~~~~~~~~v~~l~~~~---~--~--l~~~~~d~~i~vw 97 (357)
.|. ..-|+.++.. +|.|.+. .. ...+..+. -...|++|+--+ + . |+.|+ ...+..|
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~p-h~~~~~~~~~~~~i~~LN----in~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNP-HERGQRTGRQDSDISFLN----INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECC-CccccccccccCceeEEE----CCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 455 4456777766 9999987 42 22344444 567888886543 2 2 55555 4689999
Q ss_pred ecCCccc
Q 038568 98 KITASRQ 104 (357)
Q Consensus 98 d~~~~~~ 104 (357)
|+.....
T Consensus 79 DV~~N~d 85 (136)
T PF14781_consen 79 DVENNSD 85 (136)
T ss_pred EcccCch
Confidence 9987653
No 454
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=88.70 E-value=14 Score=31.43 Aligned_cols=191 Identities=18% Similarity=0.147 Sum_probs=103.1
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhhccccccccEEEEEEe----cCC-e--EEEEeC-C---CeEEEEEccccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVNAVVVS----DNG-V--VYTGSA-D---GRIRVWERSVVDHNKERK 221 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~-~--l~~~~~-d---~~i~i~d~~~~~~~~~~~ 221 (357)
.+++....++-+.+||+. |+.++.+. ...++.+..- -++ . |++++. + ..|++|.+... .
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~------~ 138 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD------T 138 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT------T
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC------C
Confidence 678888888999999985 66666652 2233333332 133 2 555443 2 57999988621 0
Q ss_pred cceeeee----EeeccccceeEEEEe--c-CCC-EEEEEecCCeEEEEecccCCc----eeeeeeccCCccceEEEeecC
Q 038568 222 SRHMLVT----TLVKHRSTVNALALN--G-DGS-LLFSGGCDRWIVVWERERDHR----MVFAEALWGHTGALLCLINVG 289 (357)
Q Consensus 222 ~~~~~~~----~~~~~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~ 289 (357)
.....+. .+......++.+++- + +|. +.++...+|.+..|.+..... ...++.+.. ...+-.+..+.
T Consensus 139 g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDD 217 (381)
T PF02333_consen 139 GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDD 217 (381)
T ss_dssp TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEET
T ss_pred CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEec
Confidence 0111110 011122346677763 3 344 667788899999998863221 123344432 33566666665
Q ss_pred c--eEEEecCCCeEEEeeCCCCc--ceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 290 D--LLASGSADRTVRIWQRGKEN--CYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
. .|+.+-++--|+-|+.+... ..+.+....+ ....|-.|+.-.... ..+++|+|.-.+++..+||
T Consensus 218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~---g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSD---GKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CC---C-EEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCC---CCeEEEEEcCCCCeEEEEe
Confidence 5 89999999888888876432 2233433332 446788898876542 2345667766778888875
No 455
>PLN02153 epithiospecifier protein
Probab=88.28 E-value=14 Score=31.06 Aligned_cols=53 Identities=4% Similarity=-0.096 Sum_probs=28.3
Q ss_pred CeEEEEecccCCceeeeee---ccCCccceEEEeecCceEEEecCC--------------CeEEEeeCCCC
Q 038568 256 RWIVVWERERDHRMVFAEA---LWGHTGALLCLINVGDLLASGSAD--------------RTVRIWQRGKE 309 (357)
Q Consensus 256 g~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~vw~~~~~ 309 (357)
..+.+||+.+.+=. .+.. .........++...+.+++.|+.. +.+..+|+.+.
T Consensus 217 ~~v~~yd~~~~~W~-~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 217 NAVQFFDPASGKWT-EVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred CceEEEEcCCCcEE-eccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 45888998765421 2211 111122233445555677777742 25778888765
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.03 E-value=17 Score=31.45 Aligned_cols=150 Identities=10% Similarity=0.001 Sum_probs=81.5
Q ss_pred EEEEEEecCCeEEEEeCCCeEE-EEEccccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecc
Q 038568 186 VNAVVVSDNGVVYTGSADGRIR-VWERSVVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERE 264 (357)
Q Consensus 186 v~~~~~~~~~~l~~~~~d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 264 (357)
...+...+++.++..+..|.+. -||-- ....+.. -......++.+.+.+++..++++ .+|.+.. ...
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G--------~~~W~~~--~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d 308 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPG--------QPYWQPH--NRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKG 308 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCC--------CcceEEe--cCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecC
Confidence 3445556777555555555443 34321 0001111 12234568899999998877665 5665443 333
Q ss_pred cCCcee--eeeecc--CCccceEEEeecCc-eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCC
Q 038568 265 RDHRMV--FAEALW--GHTGALLCLINVGD-LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASN 339 (357)
Q Consensus 265 ~~~~~~--~~~~~~--~~~~~v~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 339 (357)
.+.... .+.... .....+..+.+.++ .++.++..|.+... ...++.++.......-......+.|.++++
T Consensus 309 ~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~---- 383 (398)
T PLN00033 309 TGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKK---- 383 (398)
T ss_pred CCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCc----
Confidence 332110 111111 12234777777665 77777788866665 355555554433333456788999988775
Q ss_pred CeEEEEEcCCCCeEEec
Q 038568 340 GIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 340 ~~~~l~s~~~dg~v~~w 356 (357)
.++ .+.+|.|.-|
T Consensus 384 ---g~~-~G~~G~il~~ 396 (398)
T PLN00033 384 ---GFV-LGNDGVLLRY 396 (398)
T ss_pred ---eEE-EeCCcEEEEe
Confidence 444 4568887655
No 457
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.86 E-value=11 Score=32.54 Aligned_cols=37 Identities=3% Similarity=-0.141 Sum_probs=29.9
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
...+.+++.+| .+.++...=|.|.++|+.++..++.+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW 345 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW 345 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh
Confidence 34578899999 56666666699999999999988887
No 458
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.67 E-value=28 Score=33.67 Aligned_cols=102 Identities=12% Similarity=0.177 Sum_probs=61.3
Q ss_pred EEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCCeEEEeeCCCCcceeeeeee-
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKENCYRCMAFL- 318 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~- 318 (357)
.+..|-..++++| ....+++||+-..+.+.. ..+..-...|..+.+....++.|..--.+.++..+... ..+..+
T Consensus 939 ~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk-~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~--n~l~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRK-CELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED--NQLIVFA 1014 (1205)
T ss_pred eEEeccCCEEEEe-cccEEEEeeCChHHHHhh-hhhccCceEEEEEeecceEEEEeeccceEEEEEEecCC--CeEEEEe
Confidence 4566755566555 566899999976553321 12222456788888888888888876667666555432 122222
Q ss_pred -cCCcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeE
Q 038568 319 -EGHEKPVKSLVAISSSSSASNGIVSIGSGSLNGEI 353 (357)
Q Consensus 319 -~~h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v 353 (357)
..-...|+++.+-..+ -++.+..=|.+
T Consensus 1015 dD~~pR~Vt~~~~lD~~--------tvagaDrfGNi 1042 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELLDYD--------TVAGADRFGNI 1042 (1205)
T ss_pred CCCccceeeEEEEecCC--------ceeeccccCcE
Confidence 2234557777776665 36655554544
No 459
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.51 E-value=12 Score=29.21 Aligned_cols=99 Identities=9% Similarity=0.099 Sum_probs=61.3
Q ss_pred EEEEEEecCCe--EEEEeCCCeEEEEEccccccccccccceeeeeEeec----cccceeEEEEecCCCEEEEEecCCeEE
Q 038568 186 VNAVVVSDNGV--VYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVK----HRSTVNALALNGDGSLLFSGGCDRWIV 259 (357)
Q Consensus 186 v~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~ 259 (357)
-+.++|+.+.+ .++-+.+-+|.-||.......-. ....+..++. .....-.++...+|++.++.-..++|.
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCccccc---CcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence 35678876663 55666777887788431111101 1111222221 111223456677888888888899999
Q ss_pred EEecccCCceeeeeeccCCccceEEEeecCc
Q 038568 260 VWERERDHRMVFAEALWGHTGALLCLINVGD 290 (357)
Q Consensus 260 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 290 (357)
..|..+++.+..+.. ....+++++|-+.
T Consensus 237 ~~dp~tGK~L~eikl---Pt~qitsccFgGk 264 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKL---PTPQITSCCFGGK 264 (310)
T ss_pred EECCCCCcEEEEEEc---CCCceEEEEecCC
Confidence 999999996655443 4677899999876
No 460
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.17 E-value=12 Score=28.81 Aligned_cols=155 Identities=12% Similarity=0.066 Sum_probs=83.6
Q ss_pred EEEEec-CeEEEEecCCeEEEEEcCc--chhhhhccccccccEEEEEEecCC-eEEEEeCC---C---eEEEE-Eccccc
Q 038568 147 DLVVKQ-GLMYSVSWDRSFKIWNASN--YKCLESVNKAHEDAVNAVVVSDNG-VVYTGSAD---G---RIRVW-ERSVVD 215 (357)
Q Consensus 147 ~~~~~~-~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d---~---~i~i~-d~~~~~ 215 (357)
.++-.+ +.|+.+...+.|.+|++.+ .+.+.++ ..-+.|..+.++..| ++++--.+ . .+|+| +.+...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTF--STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEE--cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 334444 6666667778899999883 3344555 455889999999888 67765332 2 55664 233111
Q ss_pred ccccc---------------ccce--eeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc-e---eee--
Q 038568 216 HNKER---------------KSRH--MLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR-M---VFA-- 272 (357)
Q Consensus 216 ~~~~~---------------~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~---~~~-- 272 (357)
..... .... -.+.++ .-..++.+++..|-..-|+.|+ ++.+.+|.+..... . ..+
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEec
Confidence 00000 0000 111112 2345678888888433455554 45699998864432 0 000
Q ss_pred -eec-cCCc-cceEEEeecCceEEEecCCCeEEEeeC
Q 038568 273 -EAL-WGHT-GALLCLINVGDLLASGSADRTVRIWQR 306 (357)
Q Consensus 273 -~~~-~~~~-~~v~~~~~~~~~l~~~~~dg~i~vw~~ 306 (357)
..+ .-|. .....+++.++++|..+.. .++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 011 1111 2246677778888887754 4666544
No 461
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.47 E-value=9.1 Score=26.85 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=58.3
Q ss_pred CeEEEEecCCeEEEEEcCcch--------hhhhccccccccEEEEEEec---CC-e-EEEEeCCCeEEEEEccccccccc
Q 038568 153 GLMYSVSWDRSFKIWNASNYK--------CLESVNKAHEDAVNAVVVSD---NG-V-VYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~---~~-~-l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
..|+.++.-|.|.|++..... .+..+ .....|++++--+ +. + ++.-+....+..||+..
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~------ 82 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN------ 82 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc------
Confidence 567788888999999876432 22232 4566777776543 22 2 44444556899999871
Q ss_pred cccceeeeeEeeccccceeEEEEec---CCCEEEEEecCCeEEEEecccCC
Q 038568 220 RKSRHMLVTTLVKHRSTVNALALNG---DGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 220 ~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
.... .++.-...|+++.+-. ...-|+..+.+-.|.-||....+
T Consensus 83 ---N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 ---NSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred ---Cchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 1111 1222345677776643 12234444445667777766443
No 462
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.40 E-value=4.9 Score=36.50 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=38.0
Q ss_pred cCCCEEEEEecCCeEEEEeccc----CCceeee-----------eecc--------CCccceE--EEee----cCceEEE
Q 038568 244 GDGSLLFSGGCDRWIVVWERER----DHRMVFA-----------EALW--------GHTGALL--CLIN----VGDLLAS 294 (357)
Q Consensus 244 ~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~-----------~~~~--------~~~~~v~--~~~~----~~~~l~~ 294 (357)
++...++.+..||.+....... +...... ..+. ....... .+.. ..+++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666888888999988887764 1111110 0000 0012222 2323 2339999
Q ss_pred ecCCCeEEEeeCCCCcc
Q 038568 295 GSADRTVRIWQRGKENC 311 (357)
Q Consensus 295 ~~~dg~i~vw~~~~~~~ 311 (357)
-+.|+.+|+||+.+++.
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999854
No 463
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=86.20 E-value=2.5 Score=20.12 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.6
Q ss_pred ceEEEeecCceEEEecCCCeEEEee
Q 038568 281 ALLCLINVGDLLASGSADRTVRIWQ 305 (357)
Q Consensus 281 ~v~~~~~~~~~l~~~~~dg~i~vw~ 305 (357)
.|.+++..+.+++++.+-+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 4778888888999999999999984
No 464
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=85.98 E-value=8.5 Score=35.82 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=81.2
Q ss_pred eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeE
Q 038568 85 IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSF 164 (357)
Q Consensus 85 l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i 164 (357)
+..++.++.+.++.-..+........... .....+.++.+++..+..|.-||++
T Consensus 550 ic~gtq~ssisissss~~s~ke~~~~~~s--------------------------pe~~~v~~l~~ss~Slgagl~dgt~ 603 (925)
T KOG3522|consen 550 ICLGTQTSSISISSSSLDSIKEVTSEPPS--------------------------PEHESVKLLLFSSGSLGAGLIDGTL 603 (925)
T ss_pred ccccCccceeEEeeccCCcccceeccCCC--------------------------CchhhhhhhhccccccccCccCCcc
Confidence 67778888888887653332222222211 3345677777777667777777776
Q ss_pred EEEEcCc-----chhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEeeccccceeE
Q 038568 165 KIWNASN-----YKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTLVKHRSTVNA 239 (357)
Q Consensus 165 ~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 239 (357)
-.+--.. +++-..+ .....++...++..| ++.++.+|.|.++...+ ...... ......|...|++
T Consensus 604 a~y~rap~gSwd~ep~~~~-~~g~lPvrsla~~ed--~~was~gG~V~vi~~tt------~~~~~~-leahqee~~~Vth 673 (925)
T KOG3522|consen 604 AVYGRAPSGSWDGEPNISI-PTGSLPVRSLAFQED--FVWASEGGCVHVIPSTT------FIRSWD-LEAHQEEAHSVTH 673 (925)
T ss_pred ccccCCCCCCCCCCCcccc-ccCCccccchhhhhc--eeeeecCCceEEEechh------ccccch-hHHHHhhcceEEE
Confidence 6543211 0111111 223445666666544 66778899999998762 111111 1222345678999
Q ss_pred EEEecCCCEEEEEecCCeEEEEeccc
Q 038568 240 LALNGDGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 240 ~~~~~~~~~l~~~~~dg~i~vwd~~~ 265 (357)
+.+...+-+++..+.| .++.++..+
T Consensus 674 m~~~~~gVwvafasG~-~~rlfhtet 698 (925)
T KOG3522|consen 674 MLYLDNGVWVAFASGD-EERLFHTET 698 (925)
T ss_pred EEeeCCceEEEEcCCC-EEEEecccc
Confidence 9988776665555444 455555543
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.72 E-value=12 Score=33.99 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=41.1
Q ss_pred CeEEEEeCCCeEEEEEccccccccccc-----cce---eeeeE--------eeccccceeEEEEec----CCCEEEEEec
Q 038568 195 GVVYTGSADGRIRVWERSVVDHNKERK-----SRH---MLVTT--------LVKHRSTVNALALNG----DGSLLFSGGC 254 (357)
Q Consensus 195 ~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~---~~~~~--------~~~~~~~v~~~~~~~----~~~~l~~~~~ 254 (357)
..++.+..||.+..............- ... ..+.. .......+..+++++ +..+|++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 368888899999888876311000000 000 00000 001123345556655 6679999999
Q ss_pred CCeEEEEecccCCcee
Q 038568 255 DRWIVVWERERDHRMV 270 (357)
Q Consensus 255 dg~i~vwd~~~~~~~~ 270 (357)
|+.+|+||+.++..+.
T Consensus 239 D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 239 DHTLRIWSLETGQCLA 254 (547)
T ss_dssp TSEEEEEETTTTCEEE
T ss_pred CCeEEEEECCCCeEEE
Confidence 9999999999988643
No 466
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.72 E-value=21 Score=30.20 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=8.4
Q ss_pred CeEEEEEcCcch
Q 038568 162 RSFKIWNASNYK 173 (357)
Q Consensus 162 g~i~iwd~~~~~ 173 (357)
..+..||..+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888887643
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.61 E-value=20 Score=29.94 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=15.7
Q ss_pred cCCCEEEEEecCC----eEEEEecccCC
Q 038568 244 GDGSLLFSGGCDR----WIVVWERERDH 267 (357)
Q Consensus 244 ~~~~~l~~~~~dg----~i~vwd~~~~~ 267 (357)
.++++.+.|+.++ .+.+||+++.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCe
Confidence 3567777777654 35688887653
No 468
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.60 E-value=14 Score=28.34 Aligned_cols=29 Identities=7% Similarity=0.260 Sum_probs=19.1
Q ss_pred cccEEEEEEec-CCeEEEEeCCCeEEEEEcc
Q 038568 183 EDAVNAVVVSD-NGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 183 ~~~v~~~~~~~-~~~l~~~~~d~~i~i~d~~ 212 (357)
..++.+++.-| .|.|++|+. +.+.+|.+.
T Consensus 134 ~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~ 163 (215)
T PF14761_consen 134 SEPPLCIACCPVTGNLLVGCG-NKLVLFTLK 163 (215)
T ss_pred CCCCCEEEecCCCCCEEEEcC-CEEEEEEEE
Confidence 34556666665 346776654 688899886
No 469
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=85.57 E-value=3 Score=38.56 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=86.3
Q ss_pred EEEec-CeEEEEecCCeEEEEEcCcch---hhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccc
Q 038568 148 LVVKQ-GLMYSVSWDRSFKIWNASNYK---CLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSR 223 (357)
Q Consensus 148 ~~~~~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 223 (357)
..-++ ..+..|+.++.+.++.-..+. ............+.++.+++. .+..|.-||++-.|--.... ...
T Consensus 542 ~~as~~PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~-Slgagl~dgt~a~y~rap~g-----Swd 615 (925)
T KOG3522|consen 542 TQASPHPTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG-SLGAGLIDGTLAVYGRAPSG-----SWD 615 (925)
T ss_pred cccCCCCcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc-ccccCccCCccccccCCCCC-----CCC
Confidence 33344 677888899999998765222 222222334455666666543 34555556666554322100 001
Q ss_pred eeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCc--eEEEecCCCeE
Q 038568 224 HMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGD--LLASGSADRTV 301 (357)
Q Consensus 224 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i 301 (357)
.++...+.....+|.+.++..| ++-++.+|.|.++...+............|...|+++.+.+. +++-.+.| .+
T Consensus 616 ~ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~ 691 (925)
T KOG3522|consen 616 GEPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EE 691 (925)
T ss_pred CCCccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EE
Confidence 1122333344567888888765 566778999999998876544344444556778899988887 33333323 45
Q ss_pred EEeeCCC
Q 038568 302 RIWQRGK 308 (357)
Q Consensus 302 ~vw~~~~ 308 (357)
++++.++
T Consensus 692 rlfhtet 698 (925)
T KOG3522|consen 692 RLFHTET 698 (925)
T ss_pred EEecccc
Confidence 5555443
No 470
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.55 E-value=39 Score=32.37 Aligned_cols=200 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred cccccEEEEEEec-CeEEEEecCCeEEEEEcCcchhhhhccc-cccccEEEEEEe-------cCCeEEEEeCCCeEEEEE
Q 038568 140 EHWDAVSDLVVKQ-GLMYSVSWDRSFKIWNASNYKCLESVNK-AHEDAVNAVVVS-------DNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 140 ~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~-------~~~~l~~~~~d~~i~i~d 210 (357)
|..+.+..++.-. .....+..++....-+.-.......+ . ....+|..|+|. +...++..-....+.|+.
T Consensus 35 Gesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w-~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~ 113 (765)
T PF10214_consen 35 GESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAW-SIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILR 113 (765)
T ss_pred CCCCCeeEEEEecccccccccccccccccCCCCcccccee-EcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEE
Q ss_pred ------ccccccccccccceeeeeEeecccc--ceeEEEEec-CCCEEEEEecCCeEEEEec--ccCCceeeeeeccCCc
Q 038568 211 ------RSVVDHNKERKSRHMLVTTLVKHRS--TVNALALNG-DGSLLFSGGCDRWIVVWER--ERDHRMVFAEALWGHT 279 (357)
Q Consensus 211 ------~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~-~~~~l~~~~~dg~i~vwd~--~~~~~~~~~~~~~~~~ 279 (357)
+.........-........-....+ +...++|+| +.+.||+....|.-.||++ ..............+.
T Consensus 114 p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~ 193 (765)
T PF10214_consen 114 PEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNIS 193 (765)
T ss_pred cccccccccccCCccccccceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCC
Q ss_pred cce------E----EEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEeeCCCCCCCCeEEEEE
Q 038568 280 GAL------L----CLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAISSSSSASNGIVSIGS 346 (357)
Q Consensus 280 ~~v------~----~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~l~s 346 (357)
+.+ . .+.|.++ .|+.++... +.++|+++...... -........|.++.-+|... ...+++|
T Consensus 194 gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~-l~~~~~~~~IlDv~~~~~~~----~~~FiLT 266 (765)
T PF10214_consen 194 GSIIFDPEELSNWKRILWVSDSNRLLVCNRSK-LMLIDFESNWQTEY-LVTAKTWSWILDVKRSPDNP----SHVFILT 266 (765)
T ss_pred ccccCCCcccCcceeeEecCCCCEEEEEcCCc-eEEEECCCCCccch-hccCCChhheeeEEecCCcc----ceEEEEe
No 471
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.51 E-value=28 Score=29.90 Aligned_cols=40 Identities=8% Similarity=-0.101 Sum_probs=19.9
Q ss_pred EEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCC
Q 038568 258 IVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSAD 298 (357)
Q Consensus 258 i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 298 (357)
+.+||.++.+ ......+..-.....++...+.+++.|+..
T Consensus 314 ~e~yd~~~~~-W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGK-WQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCc-ccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 4578877643 212222221112234556666777777754
No 472
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.43 E-value=23 Score=28.96 Aligned_cols=219 Identities=13% Similarity=0.103 Sum_probs=113.0
Q ss_pred eeEEEEe-cceEEEeeCC--ceEEEeccC------Cc-cccceecccc--CCCCceEEEEEecC--------------ce
Q 038568 32 ISCLAVH-NSLLYAASLN--EINVFDLIS------DY-SHVDTFSNDL--SSSGSVKSITFHIT--------------KI 85 (357)
Q Consensus 32 i~~~~~s-~~~l~t~~~d--~i~iw~~~~------~~-~~~~~~~~~~--~~~~~v~~l~~~~~--------------~l 85 (357)
-+.|+|+ +..+.++... ...+||. . .. ..+-++.... ......+.+.|+.. .+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg-~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVG-NPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecC-CcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 4678888 6667766655 9999998 4 11 1122222101 12346778888732 16
Q ss_pred EEeecCCeEEEEecCCccce--eeeeecCccccceeeeecCCCeEEEeccccccccccccc-EEEEEEec----CeEEEE
Q 038568 86 FTAHQDCKIRVWKITASRQH--QLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDA-VSDLVVKQ----GLMYSV 158 (357)
Q Consensus 86 ~~~~~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~----~~l~~~ 158 (357)
+.+++||+|.-|...-.... ........ ..... -..+++.. ++|+.+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~--------------------------s~~gavYkGLAi~~~~~~~~LYaa 157 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDA--------------------------SQQGNVYKGLAVGPTGGGDYLYAA 157 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEcc--------------------------CCCcceeeeeEEeecCCCceEEEe
Confidence 88899999999986433220 00110000 11112 22344332 344433
Q ss_pred -ecCCeEEEEEcCcchhh--hhccc----ccccc--E------EEEEE---ecCC-eEEEEeCCCeEEEEEccccccccc
Q 038568 159 -SWDRSFKIWNASNYKCL--ESVNK----AHEDA--V------NAVVV---SDNG-VVYTGSADGRIRVWERSVVDHNKE 219 (357)
Q Consensus 159 -~~dg~i~iwd~~~~~~~--~~~~~----~~~~~--v------~~~~~---~~~~-~l~~~~~d~~i~i~d~~~~~~~~~ 219 (357)
-..++|.++|-.-.+.. ..+.. ..-.+ | .-+.+ .++. .=+.|..-|.|-+||..
T Consensus 158 dF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~------- 230 (336)
T TIGR03118 158 NFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN------- 230 (336)
T ss_pred ccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-------
Confidence 45788999985422211 01100 00000 1 01111 1122 12344445788899875
Q ss_pred cccceeeeeEee--ccccceeEEEEec------CCCEEEEEecCCeEEEEecccCCceeeeeeccCCccc---eEEEeec
Q 038568 220 RKSRHMLVTTLV--KHRSTVNALALNG------DGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGA---LLCLINV 288 (357)
Q Consensus 220 ~~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---v~~~~~~ 288 (357)
...++++. +.-...+.|+..| .+.+|+---.||+|..||..+++.+-.+....++.-. .+.+.|.
T Consensus 231 ----G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fG 306 (336)
T TIGR03118 231 ----GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFG 306 (336)
T ss_pred ----CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeC
Confidence 44555543 2234456777755 4667776667999999999988755444443333322 2555554
No 473
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=83.43 E-value=25 Score=29.34 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=27.2
Q ss_pred CeEEEEec-----CCeEEEEEcCcch--hhhhccccccccEEEEEEecCC-eEEEEeCCCe----EEEEEcc
Q 038568 153 GLMYSVSW-----DRSFKIWNASNYK--CLESVNKAHEDAVNAVVVSDNG-VVYTGSADGR----IRVWERS 212 (357)
Q Consensus 153 ~~l~~~~~-----dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~d~~----i~i~d~~ 212 (357)
.+.+.|+. ...+..||+.+.+ .+..+ . ........+..-++ ..+.|+.++. +..||++
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p-~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF-P-GEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCC-C-CCCCCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 55555553 2457888887643 22222 1 11111122222344 4666665532 4577765
No 474
>PLN02193 nitrile-specifier protein
Probab=83.34 E-value=33 Score=30.58 Aligned_cols=64 Identities=8% Similarity=0.020 Sum_probs=36.5
Q ss_pred CCCEEEEEecC----CeEEEEecccCCceeeeeec---cCCccceEEEeecCceEEEecCC--------------CeEEE
Q 038568 245 DGSLLFSGGCD----RWIVVWERERDHRMVFAEAL---WGHTGALLCLINVGDLLASGSAD--------------RTVRI 303 (357)
Q Consensus 245 ~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~v 303 (357)
++++++.++.+ ..+.+||+.+.+- ...... ........++...+.+++.|+.+ +.+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 56677777655 4589999886542 122111 11112223445556677777753 24788
Q ss_pred eeCCCC
Q 038568 304 WQRGKE 309 (357)
Q Consensus 304 w~~~~~ 309 (357)
+|+.+.
T Consensus 407 ~D~~t~ 412 (470)
T PLN02193 407 LDTETL 412 (470)
T ss_pred EEcCcC
Confidence 888875
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.11 E-value=32 Score=30.30 Aligned_cols=58 Identities=19% Similarity=0.085 Sum_probs=36.5
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeee--eec-c-CCccceEEEeecCce
Q 038568 234 RSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFA--EAL-W-GHTGALLCLINVGDL 291 (357)
Q Consensus 234 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~-~-~~~~~v~~~~~~~~~ 291 (357)
-...+.|+|.|++++|++--..|.|++++..+....... ... . ......+.++++|++
T Consensus 29 L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345688999999987777655799999986544321111 111 1 124567888887664
No 476
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=82.67 E-value=29 Score=29.57 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=40.0
Q ss_pred EcCcchhhhhccccccccEEE-----EEEecCC-e-EEEEeCCCe--EEEEEccccccccccccceeeeeEeeccc-cce
Q 038568 168 NASNYKCLESVNKAHEDAVNA-----VVVSDNG-V-VYTGSADGR--IRVWERSVVDHNKERKSRHMLVTTLVKHR-STV 237 (357)
Q Consensus 168 d~~~~~~~~~~~~~~~~~v~~-----~~~~~~~-~-l~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v 237 (357)
|..+|..+..+ ......... =+|.++| + |+.+..||. +.+.|+. ..+ +..+.... ...
T Consensus 16 D~~TG~~VtrL-T~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~----------t~~-i~QLTdg~g~~~ 83 (386)
T PF14583_consen 16 DPDTGHRVTRL-TPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLA----------TGE-ITQLTDGPGDNT 83 (386)
T ss_dssp -TTT--EEEE--S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETT----------T-E-EEE---SS-B-T
T ss_pred CCCCCceEEEe-cCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcc----------cCE-EEECccCCCCCc
Confidence 55566665555 222222222 2456777 4 555555665 5555554 222 22222222 223
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecccCCce
Q 038568 238 NALALNGDGSLLFSGGCDRWIVVWERERDHRM 269 (357)
Q Consensus 238 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 269 (357)
....++|+.+.++-...+..|+-.|+++.+..
T Consensus 84 ~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 84 FGGFLSPDDRALYYVKNGRSLRRVDLDTLEER 115 (386)
T ss_dssp TT-EE-TTSSEEEEEETTTEEEEEETTT--EE
T ss_pred cceEEecCCCeEEEEECCCeEEEEECCcCcEE
Confidence 35667788888766656678999999887654
No 477
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=82.58 E-value=23 Score=28.27 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=47.8
Q ss_pred cccccEEEEEEec---------CeEEEEecCCeEEEEEcCcchhhhhccccccccEE---EEEEe-cCCeEEEEeCCCeE
Q 038568 140 EHWDAVSDLVVKQ---------GLMYSVSWDRSFKIWNASNYKCLESVNKAHEDAVN---AVVVS-DNGVVYTGSADGRI 206 (357)
Q Consensus 140 ~~~~~v~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~---~~~~~-~~~~l~~~~~d~~i 206 (357)
.+...|+|++--. ..|+.|..+|.|.|.|......+..+ .-..-++. .-.+. -|.++++++.||.|
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~-~lpsvPv~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQV-QLPSVPVFISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEE-ecCCCceEEEEEeeeeccceEEEEEeCCCEE
Confidence 4456788887543 68999999999999999877766665 22222221 11233 34479999999999
Q ss_pred EEE
Q 038568 207 RVW 209 (357)
Q Consensus 207 ~i~ 209 (357)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 864
No 478
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=82.49 E-value=54 Score=32.48 Aligned_cols=185 Identities=17% Similarity=0.236 Sum_probs=99.3
Q ss_pred CCeEEEEEcCcchhhhhccccccccEEEEEEe---c----CC---eEEEEeC---------CCeEEEEEcccccccccc-
Q 038568 161 DRSFKIWNASNYKCLESVNKAHEDAVNAVVVS---D----NG---VVYTGSA---------DGRIRVWERSVVDHNKER- 220 (357)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~---~----~~---~l~~~~~---------d~~i~i~d~~~~~~~~~~- 220 (357)
...|.+....+++.+..+.......+.+++.. . .+ +|++|.. -|.+.+||+-..-++...
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP 1082 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP 1082 (1366)
T ss_pred cceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCC
Confidence 34566666666666555533333444444432 1 12 4666643 488999997521111110
Q ss_pred ccceeeeeE-eeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEeecCceEEEecCCC
Q 038568 221 KSRHMLVTT-LVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLINVGDLLASGSADR 299 (357)
Q Consensus 221 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg 299 (357)
....+.... .+..+++|..++= -+| +|+++ ....|.+|+++....+.... +..-...+.++..-.++|+.|.--.
T Consensus 1083 ~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~-~GqKI~v~~l~r~~~ligVa-FiD~~~yv~s~~~vknlIl~gDV~k 1158 (1366)
T KOG1896|consen 1083 FTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSS-QGQKIIVRKLDRDSELIGVA-FIDLPLYVHSMKVVKNLILAGDVMK 1158 (1366)
T ss_pred cccceeeeeehhhcccceEEEEE-ecc-EEEEc-cCcEEEEEEeccCCcceeeE-EeccceeEEehhhhhhheehhhhhh
Confidence 111111111 1234566766653 355 45554 34569999995444332221 2222334455555566888888777
Q ss_pred eEEEeeCCCCcceeeeeeecC--CcCceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 300 TVRIWQRGKENCYRCMAFLEG--HEKPVKSLVAISSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 300 ~i~vw~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
.|.+....... ..+..+.. ..-.+.++.|--++. ...++.+..|+.|++|
T Consensus 1159 sisfl~fqeep--~rlsL~srd~~~l~v~s~EFLVdg~-----~L~flvsDa~rNi~vy 1210 (1366)
T KOG1896|consen 1159 SISFLGFQEEP--YRLSLLSRDFEPLNVYSTEFLVDGS-----NLSFLVSDADRNIHVY 1210 (1366)
T ss_pred ceEEEEEccCc--eEEEEeecCCchhhceeeeeEEcCC-----eeEEEEEcCCCcEEEE
Confidence 78877766531 22222221 223477888887764 3578888899999875
No 479
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=82.23 E-value=34 Score=29.95 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.7
Q ss_pred ceEEEEEeeCCCCCCCCeEEEEEcCCCCeEEecC
Q 038568 324 PVKSLVAISSSSSASNGIVSIGSGSLNGEIKVWD 357 (357)
Q Consensus 324 ~v~~~~~~~~~~~~~~~~~~l~s~~~dg~v~~wd 357 (357)
.|.++...+..+ .|++...+|.|.+||
T Consensus 191 ~I~~v~~d~~r~-------~ly~l~~~~~Iq~w~ 217 (422)
T PF08801_consen 191 KIVQVAVDPSRR-------LLYTLTSDGSIQVWD 217 (422)
T ss_dssp -EEEEEEETTTT-------EEEEEESSE-EEEEE
T ss_pred ceeeEEecCCcC-------EEEEEeCCCcEEEEE
Confidence 388999988887 999999999999996
No 480
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.06 E-value=14 Score=36.16 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=23.9
Q ss_pred cccEEEEEEec--CeEEEEecCCeEEEEEcCc
Q 038568 142 WDAVSDLVVKQ--GLMYSVSWDRSFKIWNASN 171 (357)
Q Consensus 142 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 171 (357)
......++|++ .+++.+...|.|+++-...
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccc
Confidence 34556778888 9999999999999997543
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.71 E-value=37 Score=30.12 Aligned_cols=75 Identities=17% Similarity=0.063 Sum_probs=47.7
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEec---------ccCCceeeeeec--------cCCccceEEEeecCc-----eE
Q 038568 235 STVNALALNGDGSLLFSGGCDRWIVVWER---------ERDHRMVFAEAL--------WGHTGALLCLINVGD-----LL 292 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~---------~~~~~~~~~~~~--------~~~~~~v~~~~~~~~-----~l 292 (357)
-.|..+..++.|..++..+.+|.+.++=. ++++.....+++ ....-.+...+|+|+ .|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 34778888999999999999995544321 122221111111 011223456678776 67
Q ss_pred EEecCCCeEEEeeCCCC
Q 038568 293 ASGSADRTVRIWQRGKE 309 (357)
Q Consensus 293 ~~~~~dg~i~vw~~~~~ 309 (357)
..-..|+.||+||....
T Consensus 184 ~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEEecCcEEEEEecCCc
Confidence 88888999999999865
No 482
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.88 E-value=4.7 Score=19.23 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=17.3
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEE
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVW 261 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vw 261 (357)
...++++++|+++++=+.+..|.+|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777776667777654
No 483
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=80.65 E-value=12 Score=23.94 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=24.1
Q ss_pred cceeEEEEecCCCEEEEEec-CCeEEEEeccc
Q 038568 235 STVNALALNGDGSLLFSGGC-DRWIVVWERER 265 (357)
Q Consensus 235 ~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~ 265 (357)
...+.|.++|++++|.+++. .+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 45678999999998877664 68899997653
No 484
>PRK10115 protease 2; Provisional
Probab=79.55 E-value=56 Score=30.83 Aligned_cols=111 Identities=9% Similarity=0.035 Sum_probs=58.4
Q ss_pred ccEEEEEEec--CeEEEEec-C----CeEEEEEcCcchhhhhccccccccEEEEEEecCC-eEEEEeC-C-----CeEEE
Q 038568 143 DAVSDLVVKQ--GLMYSVSW-D----RSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNG-VVYTGSA-D-----GRIRV 208 (357)
Q Consensus 143 ~~v~~~~~~~--~~l~~~~~-d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~-d-----~~i~i 208 (357)
-.+..+.++| ++|+.+.. + -.|++.|+.+++.+... .... -..++|.+|+ .|+.... + ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 3466777888 55554332 2 35889999888644332 1111 1458999887 3443332 2 35666
Q ss_pred EEccccccccccccceeeeeEeecccccee-EEEEecCCCEEEEEec---CCeEEEEecc
Q 038568 209 WERSVVDHNKERKSRHMLVTTLVKHRSTVN-ALALNGDGSLLFSGGC---DRWIVVWERE 264 (357)
Q Consensus 209 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~vwd~~ 264 (357)
+++. +.......+.. ....... ....+.++++++..+. ++.+.+++..
T Consensus 204 h~lg------t~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 204 HTIG------TPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EECC------CChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 6765 22112223322 2122222 3333447777665543 4578888853
No 485
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.50 E-value=2.8 Score=20.68 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=20.8
Q ss_pred CeEEEEecCCeEEEEEcCcchhhhh
Q 038568 153 GLMYSVSWDRSFKIWNASNYKCLES 177 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~~~~ 177 (357)
..++.++.+|.+..+|.++++.+..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 4688888999999999988877654
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.17 E-value=34 Score=28.08 Aligned_cols=195 Identities=16% Similarity=0.105 Sum_probs=94.0
Q ss_pred CeEEEEecCCeEEEEEcCcchh-----hhhccccc-cccEEEEEEecC--C-e-EEEEeCCCeEEEEEccccccccccc-
Q 038568 153 GLMYSVSWDRSFKIWNASNYKC-----LESVNKAH-EDAVNAVVVSDN--G-V-VYTGSADGRIRVWERSVVDHNKERK- 221 (357)
Q Consensus 153 ~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-~~~v~~~~~~~~--~-~-l~~~~~d~~i~i~d~~~~~~~~~~~- 221 (357)
..++.+++||+|.-|...-... ...+.... ...-..+++... + + .++--..++|.+||-..........
T Consensus 101 a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F 180 (336)
T TIGR03118 101 SRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF 180 (336)
T ss_pred eeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence 3468889999999998543222 11121111 222334555432 2 3 4455568899999865211100000
Q ss_pred -cc-----ee--eeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCccceEEEe-------
Q 038568 222 -SR-----HM--LVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHTGALLCLI------- 286 (357)
Q Consensus 222 -~~-----~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~------- 286 (357)
.. .. -+.. .+..-.|+...-.++.+.=+.|..-|.|-+||+.-. .+..+ ...+.-..-..++
T Consensus 181 ~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~-as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 181 IDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRV-ASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred cCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEe-ccCCcccCCceeeeChhhhC
Confidence 00 00 0000 011112222222334333444555678999998733 21111 1112222223333
Q ss_pred -ecCceEEEecCCCeEEEeeCCCCcceeeeeeecCC---cCceEEEEEeeCCCCCCCCeEEEEEcCCC
Q 038568 287 -NVGDLLASGSADRTVRIWQRGKENCYRCMAFLEGH---EKPVKSLVAISSSSSASNGIVSIGSGSLN 350 (357)
Q Consensus 287 -~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 350 (357)
+++++|+---.||+|..||..+++..-.+....++ ...++.|.|............+++.|-.|
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~d 325 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDD 325 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCC
Confidence 34557777777999999999987433333332222 13467888876544333334455555443
No 487
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.67 E-value=54 Score=32.45 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.7
Q ss_pred ecCCCEEEEEecCCeEEEEecccCC
Q 038568 243 NGDGSLLFSGGCDRWIVVWERERDH 267 (357)
Q Consensus 243 ~~~~~~l~~~~~dg~i~vwd~~~~~ 267 (357)
++++..++++..||.+..||...++
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~ 267 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGK 267 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCc
Confidence 7789999999999999999998764
No 488
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=78.11 E-value=2.8 Score=21.82 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=22.0
Q ss_pred eEEEEecCCeEEEEEcCcchhhhhcc
Q 038568 154 LMYSVSWDRSFKIWNASNYKCLESVN 179 (357)
Q Consensus 154 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 179 (357)
.++.++.+|.|.-.|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 46677899999999999999888773
No 489
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=77.49 E-value=8.1 Score=19.99 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=19.3
Q ss_pred CcCceEEEEEeeCCCCCCCCeEEEEEcCCC--CeEEec
Q 038568 321 HEKPVKSLVAISSSSSASNGIVSIGSGSLN--GEIKVW 356 (357)
Q Consensus 321 h~~~v~~~~~~~~~~~~~~~~~~l~s~~~d--g~v~~w 356 (357)
....-....|+||++ .++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk------~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGK------YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSS------EEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCC------EEEEEecCCCCCCcCEE
Confidence 345667889999998 345555566 666665
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.02 E-value=9.9 Score=35.03 Aligned_cols=108 Identities=17% Similarity=0.258 Sum_probs=60.7
Q ss_pred CCCceEEEEEecCc--eEEeecCCeEEEEecCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEE
Q 038568 71 SSGSVKSITFHITK--IFTAHQDCKIRVWKITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDL 148 (357)
Q Consensus 71 ~~~~v~~l~~~~~~--l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 148 (357)
....++++.-+|.+ ++.+..||.|++|++...+..... ....+-..+
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~-------------------------------~~~~p~~nl 61 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKIC-------------------------------EEAKPKENL 61 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhh-------------------------------hhcCCccce
Confidence 44567788888987 999999999999998755432111 111233345
Q ss_pred EEecCeEEEEecCCeEEEEEcCcchhhhhcc--ccccccEEEEEEecCCeEEEEeCCCeEEEEE
Q 038568 149 VVKQGLMYSVSWDRSFKIWNASNYKCLESVN--KAHEDAVNAVVVSDNGVVYTGSADGRIRVWE 210 (357)
Q Consensus 149 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d 210 (357)
.|...-|++...|..+.-|.- .|...+.+. ........++...|..+-++|.--|.|.-+|
T Consensus 62 v~tnhgl~~~tsdrr~la~~~-dgvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~d 124 (1636)
T KOG3616|consen 62 VFTNHGLVTATSDRRALAWKE-DGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFD 124 (1636)
T ss_pred eeeccceEEEeccchhheeec-cCcchhhccccchhhhhccceecCchhhhhhhhhccceeeeh
Confidence 555555777777888877863 343333331 1222334455555544333333333333333
No 491
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=75.66 E-value=61 Score=29.20 Aligned_cols=203 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred cceeEEEEe-cc--eEEEee--CC-ceEEEeccCCccccceeccccCCCCceEEEEEecC------------ceEEee--
Q 038568 30 MIISCLAVH-NS--LLYAAS--LN-EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT------------KIFTAH-- 89 (357)
Q Consensus 30 ~~i~~~~~s-~~--~l~t~~--~d-~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~------------~l~~~~-- 89 (357)
...+++++- .. +|+.|+ .| .+.-|.. ...+.+..+. .-+||.+++..+. .|++++
T Consensus 256 ~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~-~~l~~~~~~~----N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~ 330 (504)
T PF10433_consen 256 SIASSLTYLKNGGDYLFVGSEFGDSQLLQISL-SNLEVLDSLP----NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGA 330 (504)
T ss_dssp S-ESEEEEESTT--EEEEEESSS-EEEEEEES-ESEEEEEEE--------SEEEEEEE-TSSSSS-------EEEEEESS
T ss_pred ChhheEEEEcCCCEEEEEEEecCCcEEEEEeC-CCcEEEEecc----CcCCccceEEeccccCCCCcccccceEEEEECc
Q ss_pred -cCCeEEEEecCCccc--eeeeeecCccccceeeeecC--CCeEEEecccccccccc-----cccEEEEEEec-----Ce
Q 038568 90 -QDCKIRVWKITASRQ--HQLVSTLPTVKDRLIRSVLP--NNYVTVRRHKKRLWLEH-----WDAVSDLVVKQ-----GL 154 (357)
Q Consensus 90 -~d~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-----~~ 154 (357)
.+|.+++..-.-+-. ......++............ ..++.+........... ...+..+.... ..
T Consensus 331 g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~T 410 (504)
T PF10433_consen 331 GKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPT 410 (504)
T ss_dssp GGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-E
T ss_pred CCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCC
Q ss_pred EEEEec---------CCeEEEEEcCcchhhhhccccccccEEEEEEecCCeEEEEeCCCeEEEEEcccccccccccccee
Q 038568 155 MYSVSW---------DRSFKIWNASNYKCLESVNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHM 225 (357)
Q Consensus 155 l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 225 (357)
|+++.. ...|++.+...++....+ ....+..-..+...+++++.+..++.+..+.+. .......
T Consensus 411 l~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w-~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~------~~~~~~~ 483 (504)
T PF10433_consen 411 LAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEW-KPPAGSIIVAASINDPQVLVALSGGELVYFELD------DNKISVS 483 (504)
T ss_dssp EEEEEETTTEEEEEESSEEEEEESSSTSEEEEE-E-TTS---SEEEESSSEEEEEE-TTEEEEEEEE------TTEEEEE
T ss_pred eEEEEcCCCeEEEEecCeEEEEECCCCeEEEEE-eCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEE------CCceeee
Q ss_pred ee-eEeeccccceeEEEEec
Q 038568 226 LV-TTLVKHRSTVNALALNG 244 (357)
Q Consensus 226 ~~-~~~~~~~~~v~~~~~~~ 244 (357)
.. .........|.|+...|
T Consensus 484 ~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 484 DNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EE----EE-SS-EEEEE---
T ss_pred eeccccccCCCceEEEEeCC
No 492
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=74.92 E-value=45 Score=27.25 Aligned_cols=51 Identities=10% Similarity=0.287 Sum_probs=33.1
Q ss_pred ceEEEeccCCccccceeccccCCCCceEEEEEecC-ceEEee-------cCCeEEEEecCCcc
Q 038568 49 EINVFDLISDYSHVDTFSNDLSSSGSVKSITFHIT-KIFTAH-------QDCKIRVWKITASR 103 (357)
Q Consensus 49 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~l~~~~-------~d~~i~vwd~~~~~ 103 (357)
.|++||. ++.+ ...+.. +-.+.|++|.|..+ .|+.++ ....+..||+.+..
T Consensus 17 ~lC~yd~-~~~q-W~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 17 GLCLYDT-DNSQ-WSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEEEC-CCCE-eecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 8999998 5533 333322 26679999999844 444333 35568889987664
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=73.62 E-value=44 Score=26.58 Aligned_cols=138 Identities=14% Similarity=0.155 Sum_probs=69.0
Q ss_pred EEEEEcCcchhhhhccccccccEEEEEEecCCe-EEEEeC-C--CeEEEEEccccccccccccceeee-eEeecccccee
Q 038568 164 FKIWNASNYKCLESVNKAHEDAVNAVVVSDNGV-VYTGSA-D--GRIRVWERSVVDHNKERKSRHMLV-TTLVKHRSTVN 238 (357)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~v~ 238 (357)
-.+||+.+++... +.......+.+-.+.+||. +.+|+. + ..+++++..... ........ ..+. ....-.
T Consensus 48 s~~yD~~tn~~rp-l~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~----~~~~w~e~~~~m~-~~RWYp 121 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSD----GTCDWTESPNDMQ-SGRWYP 121 (243)
T ss_pred EEEEecCCCcEEe-ccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCC----CCCCceECccccc-CCCccc
Confidence 3478887765322 2123333444455678895 555554 2 457888764200 00011111 1111 222333
Q ss_pred EEEEecCCCEEEEEecCCe-EEEEecccC-Cceeee---e----eccCCccceEEEeecCceEEEecCCCeEEEeeCCCC
Q 038568 239 ALALNGDGSLLFSGGCDRW-IVVWERERD-HRMVFA---E----ALWGHTGALLCLINVGDLLASGSADRTVRIWQRGKE 309 (357)
Q Consensus 239 ~~~~~~~~~~l~~~~~dg~-i~vwd~~~~-~~~~~~---~----~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vw~~~~~ 309 (357)
....-|||+.|+.|+.+.- ..+|.-... ...... . .....-.+...+..++++++.+..+. .|||..+.
T Consensus 122 T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 122 TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 4555679999998887643 444443211 111111 1 11122345566777788888887765 46677766
No 494
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=73.48 E-value=7.5 Score=20.35 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=16.0
Q ss_pred CCCEEEEEecCCeEEEEeccc
Q 038568 245 DGSLLFSGGCDRWIVVWERER 265 (357)
Q Consensus 245 ~~~~l~~~~~dg~i~vwd~~~ 265 (357)
.+..++.++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356899999999999999763
No 495
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=72.99 E-value=24 Score=29.11 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=43.8
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecccCCceeeeeeccCCc-------cceEEEeecCceEEEecCCCeEEEeeC
Q 038568 237 VNALALNGDGSLLFSGGCDRWIVVWERERDHRMVFAEALWGHT-------GALLCLINVGDLLASGSADRTVRIWQR 306 (357)
Q Consensus 237 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~l~~~~~dg~i~vw~~ 306 (357)
++++...++|.+|++.-.-..|.+.|.++++.+ ..+.+.. ....+...+.+++-.+..++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~---W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKII---WRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEE---EEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 567777889999999988899999998888743 3333321 111222223335555667778888876
No 496
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=72.95 E-value=22 Score=30.75 Aligned_cols=159 Identities=14% Similarity=0.094 Sum_probs=83.8
Q ss_pred ccccccEEEEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeeeEe-ec-ccccee-EEEEecCCCEEEEEecCC
Q 038568 180 KAHEDAVNAVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVTTL-VK-HRSTVN-ALALNGDGSLLFSGGCDR 256 (357)
Q Consensus 180 ~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~-~~~~v~-~~~~~~~~~~l~~~~~dg 256 (357)
......+..+-..|+++.+-.-....+.++++... ....+.+... .+ ....|+ .+..-..|.-+++++.||
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r------~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKR------SLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred CCCccchHhhEECCCCCEEEEecCCeEEEEeeccc------ccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 44556778888999995332233367888887621 1111111111 11 001122 222233566788889999
Q ss_pred eEEEE-ecccCCcee--eeeeccCCccceEEEeecCc--eEEEecCCCeEEEeeCCCCcceeeeeeecCCcCceEEEEEe
Q 038568 257 WIVVW-ERERDHRMV--FAEALWGHTGALLCLINVGD--LLASGSADRTVRIWQRGKENCYRCMAFLEGHEKPVKSLVAI 331 (357)
Q Consensus 257 ~i~vw-d~~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~h~~~v~~~~~~ 331 (357)
-|.-| |.+.+.... .++.+.-...++..+....+ -+++-...|.+.++..... +.+-. ..--+.+.-++++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~---~~lL~-~~~~~~~~~~~~S 366 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSE---KLLLF-ERAYQAPQLVAMS 366 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccC---cceeh-hhhhcCcceeeeC
Confidence 88776 555443221 11222222233444444333 6777788888888876554 22221 1122356678899
Q ss_pred eCCCCCCCCeEEEEEcCCCCeEEec
Q 038568 332 SSSSSASNGIVSIGSGSLNGEIKVW 356 (357)
Q Consensus 332 ~~~~~~~~~~~~l~s~~~dg~v~~w 356 (357)
|.+. +|++-. .|.++++
T Consensus 367 p~~~-------~Ll~e~-~gki~~~ 383 (733)
T COG4590 367 PNQA-------YLLSED-QGKIRLA 383 (733)
T ss_pred cccc-------hheeec-CCceEEE
Confidence 9987 776543 4556553
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=72.70 E-value=12 Score=19.58 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=19.5
Q ss_pred cceEEEee-CC-ceEEEeccCCccccceecc
Q 038568 39 NSLLYAAS-LN-EINVFDLISDYSHVDTFSN 67 (357)
Q Consensus 39 ~~~l~t~~-~d-~i~iw~~~~~~~~~~~~~~ 67 (357)
+++|+++. .+ .|.++|. .+++.+..+..
T Consensus 3 ~~~lyv~~~~~~~v~~id~-~~~~~~~~i~v 32 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT-ATNKVIATIPV 32 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC-CCCeEEEEEEC
Confidence 45555555 34 9999999 88777777663
No 498
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.45 E-value=42 Score=25.85 Aligned_cols=100 Identities=9% Similarity=-0.020 Sum_probs=51.0
Q ss_pred CeEEEEec--CCeEEEEEcCcchhhhhccccccccEE--EEEEecCCeEEEEeCCCeEEEEEccccccccccccceeeee
Q 038568 153 GLMYSVSW--DRSFKIWNASNYKCLESVNKAHEDAVN--AVVVSDNGVVYTGSADGRIRVWERSVVDHNKERKSRHMLVT 228 (357)
Q Consensus 153 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~--~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 228 (357)
.++.+.+. ...|++||+.+++.+...... ...+. .+.-..+....-.-.+|.-..+|.++ .+.+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t----------~~~lg 125 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT----------LEELG 125 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHH----------hhhhc
Confidence 34444443 346999999988876654222 11111 11112222233345677778888772 22222
Q ss_pred EeeccccceeEEEEecCCCEEEEEecCCeEEEEecccC
Q 038568 229 TLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERD 266 (357)
Q Consensus 229 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 266 (357)
.+. ..+.=+.++ .|+..|+.++....++.-|.++-
T Consensus 126 ~~~-y~GeGWgLt--~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 126 RFS-YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred ccc-cCCcceeee--cCCcceEeeCCceEEEecCHHHh
Confidence 221 122234443 35555777666667777776543
No 499
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.21 E-value=45 Score=25.69 Aligned_cols=116 Identities=9% Similarity=-0.032 Sum_probs=63.4
Q ss_pred Cccc--eeEEEEe-cceEEEee--CC-ceEEEeccCCccccceeccc--cCCCCceEEEEEecCc-eEEeecCCeEEEEe
Q 038568 28 HHMI--ISCLAVH-NSLLYAAS--LN-EINVFDLISDYSHVDTFSND--LSSSGSVKSITFHITK-IFTAHQDCKIRVWK 98 (357)
Q Consensus 28 h~~~--i~~~~~s-~~~l~t~~--~d-~i~iw~~~~~~~~~~~~~~~--~~~~~~v~~l~~~~~~-l~~~~~d~~i~vwd 98 (357)
|... -..+.+. |.++.+.+ .. .|++||+ .+++.+..-... .-..+.|+ -..+. ..-.-.+|...++|
T Consensus 42 hDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L-~~gq~~~s~~l~~~~~FgEGit---~~gd~~y~LTw~egvaf~~d 117 (262)
T COG3823 42 HDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDL-TTGQEIFSEKLAPDTVFGEGIT---KLGDYFYQLTWKEGVAFKYD 117 (262)
T ss_pred CchhhhhcceeeeCCEEEEeccccccceeEEEec-cCceEEEEeecCCcccccccee---eccceEEEEEeccceeEEEC
Confidence 5443 3456666 76676666 33 9999999 877766544321 00111111 11233 22334567777888
Q ss_pred cCCccceeeeeecCccccceeeeecCCCeEEEecccccccccccccEEEEEEecCeEEEEecCCeEEEEEcCcchhhhhc
Q 038568 99 ITASRQHQLVSTLPTVKDRLIRSVLPNNYVTVRRHKKRLWLEHWDAVSDLVVKQGLMYSVSWDRSFKIWNASNYKCLESV 178 (357)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 178 (357)
.++-+....+ ...+.=+.++.....|+.+....+++.-|.++...+.++
T Consensus 118 ~~t~~~lg~~-------------------------------~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 118 ADTLEELGRF-------------------------------SYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred hHHhhhhccc-------------------------------ccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceE
Confidence 7766544333 223344556666644555555567777777765555444
No 500
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=70.80 E-value=1.2e+02 Score=30.36 Aligned_cols=142 Identities=11% Similarity=0.094 Sum_probs=74.9
Q ss_pred CeEEEEec---------CCeEEEEEcCc-----chhhh-----h-ccccccccEEEEEEecCCeEEEEeCCCeEEEEEcc
Q 038568 153 GLMYSVSW---------DRSFKIWNASN-----YKCLE-----S-VNKAHEDAVNAVVVSDNGVVYTGSADGRIRVWERS 212 (357)
Q Consensus 153 ~~l~~~~~---------dg~i~iwd~~~-----~~~~~-----~-~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~i~d~~ 212 (357)
.+++.|.. -|.+.++|+-. +++.. . +....++.|..++ .-+|+|+++ ...+|.+|+++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G~l~~~-~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRGHLLSS-QGQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEE-EeccEEEEc-cCcEEEEEEec
Confidence 57777753 58899999743 22221 1 1234556666665 346777665 45689999984
Q ss_pred ccccccccccceeeeeEeeccccceeEEEEecCCCEEEEEecCCeEEEEecccCCc-eeeeeeccCCccceEEEee--cC
Q 038568 213 VVDHNKERKSRHMLVTTLVKHRSTVNALALNGDGSLLFSGGCDRWIVVWERERDHR-MVFAEALWGHTGALLCLIN--VG 289 (357)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~--~~ 289 (357)
. .. ....+. +.. -++.-.....=.++|+.|.--..|.+.-.+.... +..+. -....-.+.+..| ++
T Consensus 1125 r-----~~--~ligVa-FiD--~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~s-rd~~~l~v~s~EFLVdg 1193 (1366)
T KOG1896|consen 1125 R-----DS--ELIGVA-FID--LPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLS-RDFEPLNVYSTEFLVDG 1193 (1366)
T ss_pred c-----CC--cceeeE-Eec--cceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEee-cCCchhhceeeeeEEcC
Confidence 1 00 111111 111 1222222222345777777767777766653321 11111 1111223444444 34
Q ss_pred c--eEEEecCCCeEEEeeCC
Q 038568 290 D--LLASGSADRTVRIWQRG 307 (357)
Q Consensus 290 ~--~l~~~~~dg~i~vw~~~ 307 (357)
. .++++..|+.|+++-..
T Consensus 1194 ~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1194 SNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred CeeEEEEEcCCCcEEEEEeC
Confidence 3 89999999999998664
Done!