Query 038569
Match_columns 362
No_of_seqs 234 out of 1236
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:33:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 3.8E-19 1.3E-23 141.6 6.4 66 280-345 6-71 (83)
2 1x2n_A Homeobox protein pknox1 99.7 2.8E-18 9.5E-23 132.7 6.9 66 280-345 6-71 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 3.6E-18 1.2E-22 131.0 6.2 61 285-345 2-62 (67)
4 1du6_A PBX1, homeobox protein 99.7 1E-17 3.5E-22 126.3 7.3 62 281-342 3-64 (64)
5 1puf_B PRE-B-cell leukemia tra 99.7 1.7E-17 5.9E-22 128.2 6.9 66 282-347 2-67 (73)
6 2lk2_A Homeobox protein TGIF1; 99.7 4.7E-18 1.6E-22 138.1 3.8 60 285-344 9-68 (89)
7 1k61_A Mating-type protein alp 99.7 3.9E-17 1.3E-21 121.7 6.9 59 284-342 1-59 (60)
8 1le8_B Mating-type protein alp 99.7 6E-17 2.1E-21 128.7 8.4 65 281-345 2-66 (83)
9 1mnm_C Protein (MAT alpha-2 tr 99.7 5.7E-17 1.9E-21 129.6 7.6 61 280-340 26-86 (87)
10 1b72_B Protein (PBX1); homeodo 99.7 3.7E-17 1.3E-21 130.2 5.9 65 282-346 2-66 (87)
11 2ecc_A Homeobox and leucine zi 99.6 1.7E-15 5.8E-20 119.7 7.2 60 283-345 5-64 (76)
12 1akh_A Protein (mating-type pr 99.6 1.6E-15 5.3E-20 113.1 6.4 58 280-340 4-61 (61)
13 2k40_A Homeobox expressed in E 99.6 1.9E-15 6.6E-20 114.9 6.4 66 282-350 2-67 (67)
14 1bw5_A ISL-1HD, insulin gene e 99.6 4.2E-15 1.4E-19 112.7 8.2 62 280-344 2-63 (66)
15 2cra_A Homeobox protein HOX-B1 99.5 1.2E-14 3.9E-19 111.6 8.1 61 280-343 6-66 (70)
16 2da2_A Alpha-fetoprotein enhan 99.5 1.2E-14 4E-19 111.3 7.7 62 280-344 6-67 (70)
17 2hdd_A Protein (engrailed home 99.5 7.4E-15 2.5E-19 109.7 6.4 59 280-341 2-60 (61)
18 2da1_A Alpha-fetoprotein enhan 99.5 9.9E-15 3.4E-19 111.7 6.3 62 280-344 6-67 (70)
19 2dmu_A Homeobox protein goosec 99.5 1.1E-14 3.6E-19 111.7 6.3 61 280-343 6-66 (70)
20 2djn_A Homeobox protein DLX-5; 99.5 1.3E-14 4.4E-19 111.3 6.7 61 280-343 6-66 (70)
21 2l7z_A Homeobox protein HOX-A1 99.5 2E-14 6.8E-19 111.4 7.7 65 280-347 6-70 (73)
22 2dmq_A LIM/homeobox protein LH 99.5 7.9E-15 2.7E-19 115.0 5.4 63 280-345 6-68 (80)
23 1ig7_A Homeotic protein MSX-1; 99.5 1.3E-14 4.3E-19 107.2 6.1 57 282-341 1-57 (58)
24 2da3_A Alpha-fetoprotein enhan 99.5 1.2E-14 3.9E-19 113.7 6.1 61 280-343 16-76 (80)
25 2h1k_A IPF-1, pancreatic and d 99.5 1.3E-14 4.3E-19 109.3 6.0 60 280-342 2-61 (63)
26 2dmt_A Homeobox protein BARH-l 99.5 2.2E-14 7.4E-19 112.9 7.6 61 280-343 16-76 (80)
27 2e1o_A Homeobox protein PRH; D 99.5 1.3E-14 4.5E-19 111.3 6.1 60 280-342 6-65 (70)
28 2dms_A Homeobox protein OTX2; 99.5 2E-14 6.7E-19 113.0 7.1 65 280-347 6-70 (80)
29 2vi6_A Homeobox protein nanog; 99.5 2E-14 6.8E-19 107.7 6.7 59 280-341 2-60 (62)
30 1wh5_A ZF-HD homeobox family p 99.5 2.5E-14 8.5E-19 113.3 7.4 63 280-342 16-79 (80)
31 3rkq_A Homeobox protein NKX-2. 99.5 2.3E-14 7.8E-19 105.1 6.5 57 281-340 2-58 (58)
32 1jgg_A Segmentation protein EV 99.5 1.8E-14 6.2E-19 107.3 6.0 57 282-341 2-58 (60)
33 1fjl_A Paired protein; DNA-bin 99.5 1.9E-14 6.3E-19 113.4 6.2 59 280-341 17-75 (81)
34 1ftt_A TTF-1 HD, thyroid trans 99.5 2.6E-14 9E-19 109.2 6.6 63 281-346 2-64 (68)
35 2da4_A Hypothetical protein DK 99.5 6.5E-15 2.2E-19 115.8 3.1 64 280-343 7-71 (80)
36 2kt0_A Nanog, homeobox protein 99.5 6.2E-14 2.1E-18 110.8 7.9 62 280-344 21-82 (84)
37 1nk2_P Homeobox protein VND; h 99.5 3.8E-14 1.3E-18 110.7 6.2 60 280-342 8-67 (77)
38 2dn0_A Zinc fingers and homeob 99.5 6.4E-14 2.2E-18 109.2 7.4 62 281-345 8-69 (76)
39 2m0c_A Homeobox protein arista 99.5 6.4E-14 2.2E-18 108.1 7.3 63 279-344 7-69 (75)
40 1ahd_P Antennapedia protein mu 99.5 2.8E-14 9.4E-19 109.2 5.1 61 281-344 2-62 (68)
41 1yz8_P Pituitary homeobox 2; D 99.5 1.2E-14 4.3E-19 110.8 2.7 62 280-344 2-63 (68)
42 1zq3_P PRD-4, homeotic bicoid 99.5 4E-14 1.4E-18 108.1 5.4 60 281-343 2-61 (68)
43 3a02_A Homeobox protein arista 99.5 7E-14 2.4E-18 104.1 6.4 56 284-342 2-57 (60)
44 2cue_A Paired box protein PAX6 99.5 4.5E-14 1.5E-18 111.1 5.4 61 280-343 6-66 (80)
45 1b8i_A Ultrabithorax, protein 99.4 9.4E-14 3.2E-18 109.7 6.6 61 280-343 19-79 (81)
46 1puf_A HOX-1.7, homeobox prote 99.4 8.8E-14 3E-18 108.6 6.2 60 280-342 12-71 (77)
47 3a01_A Homeodomain-containing 99.4 7.8E-14 2.7E-18 113.1 5.3 65 279-346 15-79 (93)
48 2da5_A Zinc fingers and homeob 99.4 1.6E-13 5.5E-18 106.9 6.7 60 282-344 8-67 (75)
49 2ly9_A Zinc fingers and homeob 99.4 3.1E-13 1E-17 104.4 8.2 61 281-344 6-66 (74)
50 2d5v_A Hepatocyte nuclear fact 99.4 1.7E-13 5.8E-18 120.9 7.2 62 280-344 96-157 (164)
51 2hi3_A Homeodomain-only protei 99.4 1.4E-13 4.7E-18 106.5 5.8 60 281-343 2-62 (73)
52 2ecb_A Zinc fingers and homeob 99.4 3.1E-13 1E-17 109.6 7.8 60 285-347 15-74 (89)
53 3d1n_I POU domain, class 6, tr 99.4 2.1E-13 7.1E-18 119.3 7.3 59 280-341 92-150 (151)
54 2cuf_A FLJ21616 protein; homeo 99.4 1.2E-13 4.2E-18 112.0 5.5 62 280-344 6-82 (95)
55 3a03_A T-cell leukemia homeobo 99.4 1.5E-13 5E-18 101.2 5.3 53 286-341 2-54 (56)
56 1uhs_A HOP, homeodomain only p 99.4 1.7E-13 5.7E-18 105.7 5.7 59 282-343 2-61 (72)
57 2r5y_A Homeotic protein sex co 99.4 2.1E-13 7.2E-18 109.0 6.0 60 280-342 27-86 (88)
58 1wh7_A ZF-HD homeobox family p 99.4 3.3E-13 1.1E-17 107.1 6.4 62 280-342 16-79 (80)
59 3nar_A ZHX1, zinc fingers and 99.4 4.1E-13 1.4E-17 109.2 7.0 61 281-344 25-85 (96)
60 1b72_A Protein (homeobox prote 99.4 2.9E-13 9.9E-18 110.2 5.1 60 280-342 33-92 (97)
61 3nau_A Zinc fingers and homeob 99.4 3.3E-13 1.1E-17 104.0 4.6 51 288-341 11-61 (66)
62 2dmp_A Zinc fingers and homeob 99.4 9.8E-13 3.4E-17 105.9 7.4 58 284-344 16-73 (89)
63 1e3o_C Octamer-binding transcr 99.3 1.1E-12 3.6E-17 116.0 7.3 60 280-342 100-159 (160)
64 1au7_A Protein PIT-1, GHF-1; c 99.3 1.3E-12 4.5E-17 114.0 7.5 60 280-342 86-145 (146)
65 2e19_A Transcription factor 8; 99.3 1.4E-12 4.6E-17 99.3 6.5 55 284-341 6-60 (64)
66 1lfb_A Liver transcription fac 99.3 1.3E-12 4.6E-17 107.6 6.3 65 278-345 6-91 (99)
67 2xsd_C POU domain, class 3, tr 99.3 1.4E-12 4.9E-17 115.9 6.8 62 280-344 98-159 (164)
68 1wi3_A DNA-binding protein SAT 99.3 3.9E-12 1.3E-16 98.8 7.6 63 280-344 6-68 (71)
69 2l9r_A Homeobox protein NKX-3. 99.3 4.4E-12 1.5E-16 98.2 7.3 57 286-345 9-65 (69)
70 2cqx_A LAG1 longevity assuranc 99.3 1.8E-12 6.1E-17 100.7 4.9 59 282-343 9-68 (72)
71 2da6_A Hepatocyte nuclear fact 99.3 1.6E-12 5.5E-17 108.0 4.1 62 279-343 4-86 (102)
72 3l1p_A POU domain, class 5, tr 99.3 2.9E-12 9.9E-17 112.7 5.0 60 280-342 95-154 (155)
73 1x2m_A LAG1 longevity assuranc 99.2 2.1E-11 7.3E-16 93.3 5.7 51 290-342 9-59 (64)
74 2h8r_A Hepatocyte nuclear fact 99.1 7.3E-11 2.5E-15 109.9 6.5 57 280-339 141-218 (221)
75 1mh3_A Maltose binding-A1 home 99.1 4.9E-11 1.7E-15 115.3 4.5 56 282-340 366-421 (421)
76 1ic8_A Hepatocyte nuclear fact 99.1 4.8E-11 1.6E-15 109.1 3.8 59 280-341 114-193 (194)
77 2da7_A Zinc finger homeobox pr 99.0 4.1E-10 1.4E-14 87.7 5.8 46 290-338 14-59 (71)
78 2nzz_A Penetratin conjugated G 97.2 3.4E-05 1.2E-09 53.0 -0.6 33 326-358 1-33 (37)
79 2ys9_A Homeobox and leucine zi 94.3 0.026 8.9E-07 43.7 2.9 45 288-335 13-57 (70)
80 1hlv_A CENP-B, major centromer 77.7 5.4 0.00018 32.1 6.6 49 283-337 3-51 (131)
81 2glo_A Brinker CG9653-PA; prot 73.8 5.4 0.00019 28.2 4.9 48 285-336 3-50 (59)
82 2elh_A CG11849-PA, LD40883P; s 73.4 4.7 0.00016 30.8 4.9 47 282-336 17-63 (87)
83 2p7v_B Sigma-70, RNA polymeras 69.4 4.4 0.00015 29.2 3.7 56 287-346 5-60 (68)
84 1tc3_C Protein (TC3 transposas 68.8 5.7 0.00019 25.5 3.8 43 286-336 4-46 (51)
85 3hug_A RNA polymerase sigma fa 66.7 2.5 8.6E-05 32.4 1.9 49 287-343 37-85 (92)
86 2o8x_A Probable RNA polymerase 66.6 3.5 0.00012 29.3 2.6 50 287-344 15-64 (70)
87 3mzy_A RNA polymerase sigma-H 65.8 2.5 8.5E-05 34.3 1.8 48 287-343 109-156 (164)
88 1tty_A Sigma-A, RNA polymerase 64.0 5.4 0.00018 30.4 3.3 56 287-346 18-73 (87)
89 3c57_A Two component transcrip 62.4 7.3 0.00025 30.3 3.9 49 287-344 27-75 (95)
90 1je8_A Nitrate/nitrite respons 60.3 6.5 0.00022 29.7 3.2 48 287-343 21-68 (82)
91 1x3u_A Transcriptional regulat 58.0 6.1 0.00021 28.8 2.6 48 288-344 17-64 (79)
92 1fse_A GERE; helix-turn-helix 57.8 10 0.00035 27.0 3.8 51 284-343 8-58 (74)
93 1ku3_A Sigma factor SIGA; heli 57.8 6.6 0.00023 28.7 2.7 55 286-344 9-64 (73)
94 2rnj_A Response regulator prot 53.5 6.9 0.00024 29.9 2.3 49 287-344 29-77 (91)
95 1p4w_A RCSB; solution structur 50.9 17 0.00057 28.9 4.2 50 284-342 31-80 (99)
96 1s7o_A Hypothetical UPF0122 pr 46.8 9.8 0.00034 30.9 2.3 49 287-343 22-70 (113)
97 1rp3_A RNA polymerase sigma fa 46.2 8.5 0.00029 33.2 2.0 48 287-342 187-234 (239)
98 1or7_A Sigma-24, RNA polymeras 44.4 9.2 0.00032 32.0 1.9 48 288-343 141-188 (194)
99 1jko_C HIN recombinase, DNA-in 42.2 17 0.00059 23.6 2.7 41 287-335 5-45 (52)
100 3lsg_A Two-component response 40.8 46 0.0016 25.4 5.3 41 292-335 3-43 (103)
101 2xi8_A Putative transcription 40.7 15 0.0005 25.2 2.2 23 314-336 17-39 (66)
102 2jn6_A Protein CGL2762, transp 40.6 33 0.0011 26.1 4.4 45 286-337 4-49 (97)
103 1iuf_A Centromere ABP1 protein 40.5 29 0.001 28.9 4.4 50 282-337 6-62 (144)
104 2r1j_L Repressor protein C2; p 39.3 17 0.00057 25.1 2.3 23 314-336 21-43 (68)
105 3clo_A Transcriptional regulat 39.1 24 0.00083 31.8 4.0 49 286-343 196-244 (258)
106 2q1z_A RPOE, ECF SIGE; ECF sig 38.6 7.4 0.00025 32.4 0.4 47 288-342 136-182 (184)
107 1zug_A Phage 434 CRO protein; 38.5 17 0.00057 25.3 2.2 24 314-337 19-42 (71)
108 3ulq_B Transcriptional regulat 38.2 26 0.00089 27.1 3.5 50 282-340 24-73 (90)
109 3bd1_A CRO protein; transcript 38.2 18 0.00062 26.4 2.4 23 314-336 14-36 (79)
110 1xsv_A Hypothetical UPF0122 pr 37.9 12 0.00042 30.1 1.6 49 287-343 25-73 (113)
111 2rn7_A IS629 ORFA; helix, all 36.5 77 0.0026 24.4 6.0 52 285-337 4-56 (108)
112 1adr_A P22 C2 repressor; trans 35.7 19 0.00066 25.4 2.2 23 314-336 21-43 (76)
113 3qp6_A CVIR transcriptional re 35.4 55 0.0019 29.9 5.8 49 284-341 194-242 (265)
114 3bs3_A Putative DNA-binding pr 35.0 21 0.00073 25.2 2.3 23 314-336 26-48 (76)
115 2b5a_A C.BCLI; helix-turn-heli 34.0 22 0.00076 25.2 2.3 23 314-336 26-48 (77)
116 1r69_A Repressor protein CI; g 33.6 23 0.00078 24.5 2.2 24 314-337 17-40 (69)
117 2k27_A Paired box protein PAX- 32.9 91 0.0031 25.6 6.3 51 285-338 81-138 (159)
118 3b7h_A Prophage LP1 protein 11 32.6 25 0.00084 25.0 2.3 23 314-336 23-45 (78)
119 1l0o_C Sigma factor; bergerat 31.9 9.7 0.00033 32.7 0.0 46 287-340 198-243 (243)
120 3omt_A Uncharacterized protein 31.9 24 0.00082 25.1 2.2 22 314-335 24-45 (73)
121 2wiu_B HTH-type transcriptiona 31.8 30 0.001 25.2 2.8 23 314-336 28-50 (88)
122 2jpc_A SSRB; DNA binding prote 31.6 34 0.0012 23.4 2.9 29 315-343 17-45 (61)
123 1y7y_A C.AHDI; helix-turn-heli 31.5 25 0.00086 24.6 2.2 22 314-335 29-50 (74)
124 3t72_q RNA polymerase sigma fa 30.8 26 0.0009 27.9 2.4 56 287-346 19-74 (99)
125 2a6c_A Helix-turn-helix motif; 30.4 29 0.00099 25.6 2.5 23 314-336 34-56 (83)
126 1hlv_A CENP-B, major centromer 30.1 1.6E+02 0.0055 23.1 7.1 59 280-339 65-130 (131)
127 2iw5_B Protein corest, REST co 29.5 1.8E+02 0.0062 27.0 8.1 75 258-339 106-181 (235)
128 1pdn_C Protein (PRD paired); p 28.7 1.1E+02 0.0039 23.1 5.8 48 284-334 72-126 (128)
129 3kz3_A Repressor protein CI; f 28.6 28 0.00097 25.3 2.1 23 314-336 28-50 (80)
130 2kpj_A SOS-response transcript 28.3 29 0.001 26.1 2.2 23 314-336 25-47 (94)
131 2ef8_A C.ECOT38IS, putative tr 27.5 32 0.0011 24.7 2.2 23 314-336 26-48 (84)
132 2k9q_A Uncharacterized protein 27.5 29 0.001 24.9 2.0 23 314-336 18-40 (77)
133 1k78_A Paired box protein PAX5 27.0 1.5E+02 0.0052 23.8 6.6 50 285-337 88-144 (149)
134 2ict_A Antitoxin HIGA; helix-t 26.4 33 0.0011 25.6 2.2 23 314-336 24-46 (94)
135 2q0o_A Probable transcriptiona 26.3 38 0.0013 29.9 2.9 49 283-340 171-219 (236)
136 2jqq_A Conserved oligomeric go 25.8 68 0.0023 29.2 4.4 37 183-219 82-120 (204)
137 1u78_A TC3 transposase, transp 25.0 77 0.0026 24.9 4.3 44 285-336 4-47 (141)
138 1rzs_A Antirepressor, regulato 24.7 37 0.0012 24.1 2.0 19 314-332 13-31 (61)
139 2w9j_A Signal recognition part 24.6 29 0.001 27.6 1.6 23 175-197 64-86 (91)
140 3f6w_A XRE-family like protein 24.4 39 0.0013 24.4 2.2 23 314-336 30-52 (83)
141 2lfw_A PHYR sigma-like domain; 24.4 33 0.0011 28.3 2.0 53 286-346 92-144 (157)
142 1lmb_3 Protein (lambda repress 24.1 39 0.0013 24.9 2.2 22 314-335 33-54 (92)
143 1l3l_A Transcriptional activat 24.0 52 0.0018 29.0 3.4 49 283-340 169-217 (234)
144 2x48_A CAG38821; archeal virus 23.2 44 0.0015 22.5 2.2 21 314-334 34-54 (55)
145 2k27_A Paired box protein PAX- 23.1 64 0.0022 26.6 3.6 43 286-336 24-66 (159)
146 2izy_A CAMP-dependent protein 22.7 1.1E+02 0.0037 21.9 4.2 28 121-148 3-30 (54)
147 2l49_A C protein; P2 bacteriop 22.6 46 0.0016 24.9 2.4 23 314-336 20-42 (99)
148 3t76_A VANU, transcriptional r 22.6 44 0.0015 25.7 2.3 22 314-335 40-61 (88)
149 1neq_A DNA-binding protein NER 22.4 44 0.0015 24.9 2.2 21 314-334 25-45 (74)
150 3bdn_A Lambda repressor; repre 22.1 88 0.003 27.2 4.4 18 308-325 56-73 (236)
151 3s8q_A R-M controller protein; 21.7 47 0.0016 24.0 2.2 22 314-335 27-48 (82)
152 1pdn_C Protein (PRD paired); p 21.7 96 0.0033 23.6 4.1 42 287-336 17-58 (128)
153 1xc0_A Pardaxin P-4, PA4; BEND 21.7 46 0.0016 21.5 1.8 21 119-139 6-26 (33)
154 1x57_A Endothelial differentia 20.8 50 0.0017 24.4 2.2 23 314-336 29-51 (91)
155 3qq6_A HTH-type transcriptiona 20.7 51 0.0017 24.0 2.2 21 314-334 26-46 (78)
156 3mn2_A Probable ARAC family tr 20.4 1.6E+02 0.0055 22.3 5.2 40 292-335 3-42 (108)
157 3szt_A QCSR, quorum-sensing co 20.3 1.1E+02 0.0039 27.0 4.8 49 283-340 171-219 (237)
158 2ewt_A BLDD, putative DNA-bind 20.2 52 0.0018 22.8 2.1 23 314-336 24-48 (71)
159 2lv7_A Calcium-binding protein 20.1 2.5E+02 0.0086 21.4 6.3 54 281-334 23-80 (100)
160 3fmy_A HTH-type transcriptiona 20.1 78 0.0027 22.7 3.1 41 286-336 9-49 (73)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-19 Score=141.64 Aligned_cols=66 Identities=45% Similarity=0.677 Sum_probs=61.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
+++|+|+.|+++++.+|+.||.+|..+|||+..+|..||..|||+..||.+||+|+|+|.|+++.+
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 577889999999999999999999999999999999999999999999999999999998876543
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.8e-18 Score=132.73 Aligned_cols=66 Identities=44% Similarity=0.746 Sum_probs=62.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
+++|+|+.|+.+++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|++..+
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 467888999999999999999999999999999999999999999999999999999999887654
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.6e-18 Score=130.96 Aligned_cols=61 Identities=44% Similarity=0.760 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
.++||++++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|+++..
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999988754
No 4
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1e-17 Score=126.27 Aligned_cols=62 Identities=34% Similarity=0.556 Sum_probs=58.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
.+++|+.|+.++..+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 56788999999999999999999999999999999999999999999999999999998874
No 5
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=1.7e-17 Score=128.24 Aligned_cols=66 Identities=35% Similarity=0.590 Sum_probs=61.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCch
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQ 347 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~~ 347 (362)
+|+|+.|++++..+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|+.....+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 678899999999999999999999999999999999999999999999999999999888776543
No 6
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-18 Score=138.10 Aligned_cols=60 Identities=42% Similarity=0.622 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
..-||++++.+|++||.+|..+|||++++|..||++|||+.+||+|||+|+|+|.|+++.
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 456999999999999999999999999999999999999999999999999999988654
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=3.9e-17 Score=121.66 Aligned_cols=59 Identities=27% Similarity=0.468 Sum_probs=56.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
+++.|++++..+|+.||..|+.+|||+..+|..||..+||+..||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46789999999999999999999999999999999999999999999999999997764
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.68 E-value=6e-17 Score=128.65 Aligned_cols=65 Identities=25% Similarity=0.396 Sum_probs=58.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
|++++++|+.++..+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|+....
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 44556669999999999999999999999999999999999999999999999999998886543
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.68 E-value=5.7e-17 Score=129.59 Aligned_cols=61 Identities=28% Similarity=0.477 Sum_probs=58.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
.++|+|+.|+++++.+|+.||..|+.+|||+..+|..||..|||+..||.+||+|+|+|.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4677788999999999999999999999999999999999999999999999999999965
No 10
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.67 E-value=3.7e-17 Score=130.21 Aligned_cols=65 Identities=34% Similarity=0.586 Sum_probs=60.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCc
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESV 346 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~ 346 (362)
||+|+.|+++++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 67889999999999999999988999999999999999999999999999999999988876554
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.7e-15 Score=119.72 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 283 KKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 283 rkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
.++++|+++++.+|+.||.. +|||+..+|..||+.|||+..||.+||+|+|.|.|+...+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 45778999999999999999 8999999999999999999999999999999998776544
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.59 E-value=1.6e-15 Score=113.12 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=48.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
+++|+|+.|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46788899999999999999999 79999999999999999999999999999999853
No 13
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=114.89 Aligned_cols=66 Identities=20% Similarity=0.346 Sum_probs=61.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCchhhh
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQFNL 350 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~~~~~ 350 (362)
+|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....+|.+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q~~~ 67 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQFLM 67 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTCCCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhccccC
Confidence 678899999999999999988 999999999999999999999999999999999999888777753
No 14
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=4.2e-15 Score=112.72 Aligned_cols=62 Identities=29% Similarity=0.361 Sum_probs=58.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
+++|+|+.|+.++..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46788999999999999999999 899999999999999999999999999999999877654
No 15
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.2e-14 Score=111.61 Aligned_cols=61 Identities=26% Similarity=0.340 Sum_probs=57.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
+.+|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 46788999999999999999999 89999999999999999999999999999999987754
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=111.30 Aligned_cols=62 Identities=23% Similarity=0.424 Sum_probs=58.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
+++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 46788999999999999999999 899999999999999999999999999999999887654
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.54 E-value=7.4e-15 Score=109.74 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=52.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
.++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 36788999999999999999999 899999999999999999999999999999999766
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.53 E-value=9.9e-15 Score=111.70 Aligned_cols=62 Identities=21% Similarity=0.466 Sum_probs=57.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
+++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 46788999999999999999999 899999999999999999999999999999999877654
No 19
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=111.69 Aligned_cols=61 Identities=20% Similarity=0.395 Sum_probs=56.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
..+|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 46788999999999999999999 89999999999999999999999999999999977643
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=111.34 Aligned_cols=61 Identities=26% Similarity=0.334 Sum_probs=57.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
+.+|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 46788999999999999999988 89999999999999999999999999999999987754
No 21
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.52 E-value=2e-14 Score=111.38 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=60.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCch
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQ 347 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~~ 347 (362)
+.+|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....++
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~ 70 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKLK 70 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhcccC
Confidence 46788999999999999999999 899999999999999999999999999999999888766543
No 22
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.9e-15 Score=114.99 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=58.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
+++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 46788999999999999999999 8999999999999999999999999999999998775443
No 23
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.52 E-value=1.3e-14 Score=107.15 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
+|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 477899999999999999999 899999999999999999999999999999999654
No 24
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=113.75 Aligned_cols=61 Identities=28% Similarity=0.437 Sum_probs=57.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
+++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 36788999999999999999999 89999999999999999999999999999999987754
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.52 E-value=1.3e-14 Score=109.26 Aligned_cols=60 Identities=25% Similarity=0.329 Sum_probs=54.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
+++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 35788999999999999999999 8999999999999999999999999999999997653
No 26
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=112.89 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=57.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
+++|+|+.|+.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 36788899999999999999999 89999999999999999999999999999999987764
No 27
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=1.3e-14 Score=111.27 Aligned_cols=60 Identities=22% Similarity=0.363 Sum_probs=56.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
..+|+|..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 46778899999999999999999 8999999999999999999999999999999997654
No 28
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=2e-14 Score=113.01 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=59.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCch
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQ 347 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~~ 347 (362)
+++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 46788999999999999999999 899999999999999999999999999999999887665543
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.51 E-value=2e-14 Score=107.71 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=51.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
+++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 36788999999999999999999 899999999999999999999999999999999765
No 30
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.51 E-value=2.5e-14 Score=113.30 Aligned_cols=63 Identities=11% Similarity=0.245 Sum_probs=58.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNL-HYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~-H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
++||+|+.|+.+++..|+.+|.. |+.+|||+..+|..||..+||++.||.+||+|+|.+.++.
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 46788999999999999999986 6778999999999999999999999999999999997653
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.50 E-value=2.3e-14 Score=105.15 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=54.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 5788999999999999999988 99999999999999999999999999999999854
No 32
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.50 E-value=1.8e-14 Score=107.27 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=53.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
+|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 467899999999999999999 899999999999999999999999999999999765
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.50 E-value=1.9e-14 Score=113.39 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=55.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
+++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk 75 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhh
Confidence 46788999999999999999999 899999999999999999999999999999999765
No 34
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.50 E-value=2.6e-14 Score=109.15 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=58.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCc
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESV 346 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~ 346 (362)
++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 6788999999999999999999 89999999999999999999999999999999987765543
No 35
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6.5e-15 Score=115.75 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=57.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLH-YNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H-~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
+++|+|+.|+.++..+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 467888999999999999999994 3349999999999999999999999999999999987744
No 36
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=6.2e-14 Score=110.82 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=57.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
+++|+|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999999999999 899999999999999999999999999999999877543
No 37
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.48 E-value=3.8e-14 Score=110.71 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=56.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
+++|+|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 46778889999999999999999 8999999999999999999999999999999997653
No 38
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.4e-14 Score=109.17 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=56.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
..+.|++|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 3455788999999999999999 8999999999999999999999999999999998876554
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.47 E-value=6.4e-14 Score=108.07 Aligned_cols=63 Identities=21% Similarity=0.300 Sum_probs=58.1
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 279 FSKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 279 ~~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.+++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 356788899999999999999999 899999999999999999999999999999999877654
No 40
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.47 E-value=2.8e-14 Score=109.16 Aligned_cols=61 Identities=23% Similarity=0.376 Sum_probs=57.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 5788999999999999999999 899999999999999999999999999999999776543
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.47 E-value=1.2e-14 Score=110.83 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=57.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
+++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 46788999999999999999998 999999999999999999999999999999999776554
No 42
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.46 E-value=4e-14 Score=108.14 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=56.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 5788999999999999999998 99999999999999999999999999999999977643
No 43
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.46 E-value=7e-14 Score=104.08 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
.|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 4678999999999999999 8999999999999999999999999999999997764
No 44
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=4.5e-14 Score=111.08 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=56.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 46788999999999999999998 99999999999999999999999999999999976643
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.45 E-value=9.4e-14 Score=109.70 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=53.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.++|+|+.|+.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 46788999999999999999999 89999999999999999999999999999999987754
No 46
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.45 E-value=8.8e-14 Score=108.64 Aligned_cols=60 Identities=27% Similarity=0.307 Sum_probs=56.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
.++|+|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999 8999999999999999999999999999999997653
No 47
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.43 E-value=7.8e-14 Score=113.08 Aligned_cols=65 Identities=20% Similarity=0.337 Sum_probs=59.1
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCc
Q 038569 279 FSKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESV 346 (362)
Q Consensus 279 ~~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~ 346 (362)
.+++|+|+.|+.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~ 79 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEE 79 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHH
Confidence 357788999999999999999999 89999999999999999999999999999999977765443
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=106.88 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.+++.+|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 355667999999999999999 999999999999999999999999999999999776554
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=104.43 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=56.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.++.|+.|+.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 5678899999999999999999 999999999999999999999999999999999766543
No 50
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.42 E-value=1.7e-13 Score=120.93 Aligned_cols=62 Identities=19% Similarity=0.344 Sum_probs=54.3
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
++||+|+.|+..++.+|+.||.. +|||+..+|..||..+||+..||.+||+|+|+|.|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 46788999999999999999999 799999999999999999999999999999999887643
No 51
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.4e-13 Score=106.50 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=54.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWN-LHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~-~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
..++|+.|+.++..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999998 5 89999999999999999999999999999999876643
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=3.1e-13 Score=109.60 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCch
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQ 347 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~~ 347 (362)
...++.++..+|+.+|.. ++||+..+|..||..|||+..||.+||+|+|.|.++..+...
T Consensus 15 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred hccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 347999999999999999 899999999999999999999999999999998766655544
No 53
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=119.25 Aligned_cols=59 Identities=22% Similarity=0.434 Sum_probs=56.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
++||+|+.|+..+..+|+.||.. +|||+..++..||+.+||+..||.+||+|+|.|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 46778899999999999999999 899999999999999999999999999999999876
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=1.2e-13 Score=112.00 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=57.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTG---------------LDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~Tg---------------Ls~kQI~nWF~N~RrR~kkp~e 344 (362)
+++|+|..|+..+..+|+.||.. +|||+..+|..||+.+| |+..||.+||+|+|+|.|+...
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999 99999999999999999 9999999999999999776543
No 55
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.42 E-value=1.5e-13 Score=101.22 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 46899999999999999 899999999999999999999999999999999765
No 56
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=1.7e-13 Score=105.67 Aligned_cols=59 Identities=17% Similarity=0.306 Sum_probs=54.0
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 282 KKKKGKLPKEARQILFDWWN-LHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~-~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.|+|+.|+.++..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 36788899999999999998 4 79999999999999999999999999999999976643
No 57
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.41 E-value=2.1e-13 Score=109.04 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=53.7
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
.++|+|+.|+.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 46788999999999999999998 9999999999999999999999999999999997764
No 58
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.40 E-value=3.3e-13 Score=107.10 Aligned_cols=62 Identities=11% Similarity=0.237 Sum_probs=55.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYN--WPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~--nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
++||+|+.|+.+++..|+ -|..++. ++||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 467889999999999999 5777544 8999999999999999999999999999999997653
No 59
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.39 E-value=4.1e-13 Score=109.19 Aligned_cols=61 Identities=21% Similarity=0.249 Sum_probs=55.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 281 KKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.+|+|+.|+..+..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 5677899999999999999999 899999999999999999999999999999999887643
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=2.9e-13 Score=110.16 Aligned_cols=60 Identities=22% Similarity=0.333 Sum_probs=53.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
..+|+|+.|+.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 46788999999999999999998 8999999999999999999999999999999997654
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.37 E-value=3.3e-13 Score=104.02 Aligned_cols=51 Identities=29% Similarity=0.429 Sum_probs=48.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 288 LPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 288 lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
-++++...|+..|.. ++||+..++..||..|||+..||.+||+|+|.|.|+
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 489999999999999 899999999999999999999999999999998653
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.8e-13 Score=105.87 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
++.+++.++..+|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 3445899999999999999 899999999999999999999999999999999765543
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.35 E-value=1.1e-12 Score=115.97 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=54.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
++||+|+.|+..+..+|+.+|.. +|||+..++..||+.+||+..||.+||+|+|.|.||.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 46788999999999999999999 9999999999999999999999999999999998774
No 64
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.34 E-value=1.3e-12 Score=113.97 Aligned_cols=60 Identities=22% Similarity=0.437 Sum_probs=54.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
+++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 46778999999999999999999 9999999999999999999999999999999997763
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=99.29 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
.+....+++..+|+.+|.. ++||+..+|..||+.+||+.+||.+||+|+|.|.++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 3456779999999999988 999999999999999999999999999999999665
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.33 E-value=1.3e-12 Score=107.59 Aligned_cols=65 Identities=23% Similarity=0.396 Sum_probs=53.1
Q ss_pred hhccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CChhhHhhhhhhhh
Q 038569 278 EFSKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAES------------------TG---LDQRQINNWFINQR 336 (362)
Q Consensus 278 e~~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~------------------Tg---Ls~kQI~nWF~N~R 336 (362)
..+++|+|..|+..+..+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3457788999999999999999999 899999999999999 88 99999999999999
Q ss_pred hhcCCCCCC
Q 038569 337 KRHWKPSES 345 (362)
Q Consensus 337 rR~kkp~e~ 345 (362)
++.+.....
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 997765543
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.32 E-value=1.4e-12 Score=115.91 Aligned_cols=62 Identities=23% Similarity=0.413 Sum_probs=51.6
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
++||+|+.|+..+..+|+.+|.. +|||+..+|..||+.+||+..||.+||+|+|.|.|+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 46788999999999999999999 999999999999999999999999999999999877654
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=3.9e-12 Score=98.79 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=58.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.+||.|+.|+.+|..+|+..|..- ++||+.+.++.||.+|||+..+|..||+|+|--.+.+..
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~ 68 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCC
Confidence 578899999999999999999985 799999999999999999999999999999998877653
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.30 E-value=4.4e-12 Score=98.15 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCC
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSES 345 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~ 345 (362)
..++..+...|+.+|.. ++||+..+|..||..+||+.+||.+||+|+|.|.|+....
T Consensus 9 ~~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 35788999999999999 9999999999999999999999999999999997776543
No 70
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=1.8e-12 Score=100.69 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=52.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 282 KKKKGKLPKEARQILFDWW-NLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf-~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.|+++.++.++..+|+..| .. ++||+..++..||..+||+..||.+||+|+|.+.|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4556668888999999999 77 99999999999999999999999999999999976654
No 71
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=107.99 Aligned_cols=62 Identities=24% Similarity=0.361 Sum_probs=57.1
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCChhhHhhhhhhhhh
Q 038569 279 FSKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAEST---------------------GLDQRQINNWFINQRK 337 (362)
Q Consensus 279 ~~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~T---------------------gLs~kQI~nWF~N~Rr 337 (362)
.++||.|..|++.+..+|+.+|.. +|||+..+|..||+.+ +|+..+|.+||+|+|+
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 357888999999999999999999 8999999999999999 7999999999999999
Q ss_pred hcCCCC
Q 038569 338 RHWKPS 343 (362)
Q Consensus 338 R~kkp~ 343 (362)
|.++..
T Consensus 81 k~kr~~ 86 (102)
T 2da6_A 81 EEAFRQ 86 (102)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 976653
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.26 E-value=2.9e-12 Score=112.71 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=55.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
++||+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 46788999999999999999988 9999999999999999999999999999999997764
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=2.1e-11 Score=93.26 Aligned_cols=51 Identities=22% Similarity=0.312 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 290 KEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 290 ke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
..+..+|+..|..+ ++||+..++..||+++||+..||.+||+|+|.+.|+.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34689999999543 8999999999999999999999999999999996643
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.10 E-value=7.3e-11 Score=109.87 Aligned_cols=57 Identities=25% Similarity=0.496 Sum_probs=53.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhh
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTG---------------------LDQRQINNWFINQRKR 338 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~Tg---------------------Ls~kQI~nWF~N~RrR 338 (362)
++||.|..|++.++.+|+.||.. +|||+..+|..||+.|| |+..||.|||+|+|++
T Consensus 141 k~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 141 KMRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp -CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 46788999999999999999999 89999999999999998 8999999999999998
Q ss_pred c
Q 038569 339 H 339 (362)
Q Consensus 339 ~ 339 (362)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 4
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.08 E-value=4.9e-11 Score=115.33 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=51.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
++.+..|.+.++..|+++|.. +|||+..+|..||++|||+.+||++||+|+|+|.|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 445667999999999999999 89999999999999999999999999999999965
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.07 E-value=4.8e-11 Score=109.11 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=53.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhh
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTG---------------------LDQRQINNWFINQRKR 338 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~Tg---------------------Ls~kQI~nWF~N~RrR 338 (362)
++||+|..|++.++.+|+.+|.. +|||+..+|..||..++ |+..||.+||+|+|++
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 36788999999999999999999 89999999999999999 9999999999999999
Q ss_pred cCC
Q 038569 339 HWK 341 (362)
Q Consensus 339 ~kk 341 (362)
.+.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 763
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=4.1e-10 Score=87.70 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 038569 290 KEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKR 338 (362)
Q Consensus 290 ke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR 338 (362)
++++.+|+..|.. ||+|+.+++..||..+||+.+.|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6789999999999 999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=97.23 E-value=3.4e-05 Score=52.96 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=23.8
Q ss_pred hhHhhhhhhhhhhcCCCCCCchhhhcccCCCCC
Q 038569 326 RQINNWFINQRKRHWKPSESVQFNLMDSVCGPI 358 (362)
Q Consensus 326 kQI~nWF~N~RrR~kkp~e~~~~~~~d~~~~~~ 358 (362)
+||.+||+|+|.|.||....+....+...+++-
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~~~~~~~~q 33 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDIIQRMHLRQ 33 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTSSSSTTCCT
T ss_pred CCceeccHHHHHHHHHHhHHHHHHHHHHhcccc
Confidence 489999999999988777665555544444433
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.26 E-value=0.026 Score=43.72 Aligned_cols=45 Identities=24% Similarity=0.423 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038569 288 LPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 288 lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~ 335 (362)
.++.-+++|+.+|.. +....+++-..|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 355568899999999 488999999999999999999999999753
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=77.73 E-value=5.4 Score=32.07 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhh
Q 038569 283 KKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRK 337 (362)
Q Consensus 283 rkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~Rr 337 (362)
++|..|+.+.+..+-.++.. ++.++. ..+|+..|++...|..|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhh
Confidence 35678999998888777766 566552 36899999999999999887665
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=73.82 E-value=5.4 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~R 336 (362)
+++++.+.+......+.. ..+.......+|+..|++..+|.+|....+
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 557888887666555444 222112367999999999999999965443
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.43 E-value=4.7 Score=30.84 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=33.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~R 336 (362)
++++.+++.+.+......+.. .. ....+|+.+|++...|.+|....+
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 445678999886555455543 11 256899999999999999985544
No 83
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=69.38 E-value=4.4 Score=29.23 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCc
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESV 346 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~ 346 (362)
.||+..+.+|...|.-.-...+ .-.++|+.+|++...|..+....+++.++.....
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~ 60 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 60 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999998777621000122 3367999999999999999999999998876543
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=68.84 E-value=5.7 Score=25.54 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=30.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~R 336 (362)
..++.+.+..+...+.. .+ ...++|+.+|++...|..|+...+
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 45777776555444443 22 356899999999999999986543
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=66.71 E-value=2.5 Score=32.45 Aligned_cols=49 Identities=10% Similarity=0.165 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.||...+.+|.-.|.. .+ .-.++|+.+|++...|.++...+|+++++..
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3899999999875554 22 3568999999999999999999999987643
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=66.62 E-value=3.5 Score=29.27 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.||+..+.+|...|.. .+ .-.++|+..|++...|.+|....|++.++...
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 4899999999876544 22 24689999999999999999999999887654
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=65.75 E-value=2.5 Score=34.27 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.||+..+.++. .+.. .+ .-.++|+.+|++...|.++...+|+++++..
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 37999999998 4333 33 3467999999999999999999999977643
No 88
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=64.04 E-value=5.4 Score=30.40 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCc
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESV 346 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~ 346 (362)
.||+..+.+|...|.-.-... ..-.++|+.+|++...|..|...+++++++.....
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~----~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP----KTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC----CCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred hCCHHHHHHHHHHHccCCCCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999977765100012 23468999999999999999999999999877654
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=62.39 E-value=7.3 Score=30.26 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.|++..+++|.-.+ + .+ .-.++|+.+|++...|.++..+.|++++....
T Consensus 27 ~Lt~~e~~vl~l~~-~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 27 GLTDQERTLLGLLS-E----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 58999999998763 3 22 33789999999999999999999999877653
No 90
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=60.31 E-value=6.5 Score=29.71 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.|++..+.+|.-++ + .+ .-.++|+.+|++...|.++..+.+++.+...
T Consensus 21 ~Lt~~e~~vl~l~~-~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLIA-Q----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHHT-T----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 48999999997743 2 22 4568999999999999999999999987654
No 91
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=58.00 E-value=6.1 Score=28.83 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 288 LPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 288 lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
||+..+.+|.-++ . .+ .-.++|+.+|++...|..+....+++.+....
T Consensus 17 L~~~e~~vl~l~~-~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 17 LSERERQVLSAVV-A----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HCHHHHHHHHHHT-T----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred CCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 6888888887643 2 22 23589999999999999999999999877653
No 92
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=57.83 E-value=10 Score=27.03 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=40.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
....|++..+.+|..+ .. .+ .-.++|+.+|++...|..++...+++.+...
T Consensus 8 ~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 3456999999999774 22 33 3467999999999999999999999876644
No 93
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=57.82 E-value=6.6 Score=28.67 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC-CCCC
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW-KPSE 344 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k-kp~e 344 (362)
..||+..+.+|...|.-.-...+ .-.++|+.+|++...|..|...++++++ +...
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHHHhcccCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 35899999999877651000122 2358999999999999999999999988 5544
No 94
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=53.48 E-value=6.9 Score=29.90 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSE 344 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e 344 (362)
.|++..+.+|.-+ .. .+.. .++|+.+|++...|.++..+.|++.+....
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 4888999999774 33 3333 479999999999999999999999876543
No 95
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=50.86 E-value=17 Score=28.85 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
....|++..+.+|.-++.- + .-.++|+.+|++...|.++..+.+++..-.
T Consensus 31 ~~~~Lt~re~~Vl~l~~~G-----~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFAEG-----F----LVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSSCCHHHHHHHHHHHHT-----C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCCHHHHHHHHHHHcC-----C----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3567999999999765433 2 237899999999999999999999886443
No 96
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=46.85 E-value=9.8 Score=30.90 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.||+..+.++.-.|.. .+ .-.++|+.+|++...|.+|....|++.++..
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999877655 22 3468999999999999999999999877643
No 97
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=46.18 E-value=8.5 Score=33.16 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
.||+..+.+|.-.|.. .+ .-.++|+.+|++...|..+...+|+++++.
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4899999999877654 33 346799999999999999999999998753
No 98
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=44.44 E-value=9.2 Score=32.04 Aligned_cols=48 Identities=10% Similarity=-0.026 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 288 LPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 288 lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
||+..+.+|.-.+.. .++ -.++|+.+|++...|.++...+|+++++..
T Consensus 141 L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 788899988776544 232 357999999999999999999999987654
No 99
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=42.23 E-value=17 Score=23.57 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~ 335 (362)
+++.+....+...+.. .. ....+|+.+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4565554444444444 21 35689999999999999998643
No 100
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=40.81 E-value=46 Score=25.36 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038569 292 ARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 292 ~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~ 335 (362)
....+..|..+|+..|-++. ..||+.+|+++.++...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~---~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTL---SVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCH---HHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCH---HHHHHHHCcCHHHHHHHHHHH
Confidence 45667788889877755654 468888899999888887654
No 101
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=40.69 E-value=15 Score=25.19 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|..|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 102
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=40.63 E-value=33 Score=26.07 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHhCCChhhHhhhhhhhhh
Q 038569 286 GKLPKEARQILFDWWNLHYNW-PYPTEADKVALAESTGLDQRQINNWFINQRK 337 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~n-PYPs~~eK~~LA~~TgLs~kQI~nWF~N~Rr 337 (362)
++++.+.+......+.. . . .....+|+.+|++..+|.+|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~---~~g----~s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYEN---SDG----ASLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTT---GGG----SCHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHH---cCC----ChHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 56888876555444432 1 1 23678999999999999999865543
No 103
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=40.48 E-value=29 Score=28.88 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=39.1
Q ss_pred CCCCCCCCHHHHHHHHHHH-HHhcCCCCCCHHHHHHHHH----Hh--CCChhhHhhhhhhhhh
Q 038569 282 KKKKGKLPKEARQILFDWW-NLHYNWPYPTEADKVALAE----ST--GLDQRQINNWFINQRK 337 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf-~~H~~nPYPs~~eK~~LA~----~T--gLs~kQI~nWF~N~Rr 337 (362)
+++|..|+-+++..+..|+ .. +|-.+.. .||+ +. +++..+|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~---~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQ---DLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHH---HHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHH---HHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5778899999999999998 55 5655543 4555 77 7899999999887654
No 104
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=39.31 E-value=17 Score=25.06 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 46799999999999999998743
No 105
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=39.15 E-value=24 Score=31.78 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
..||+..+.+|.-.+ + .+ .-.++|+.+|++...|.+...+.|++++...
T Consensus 196 ~~L~~~erevl~L~~-~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 569999999998864 3 22 3468999999999999999999999987754
No 106
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=38.64 E-value=7.4 Score=32.43 Aligned_cols=47 Identities=21% Similarity=0.161 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCC
Q 038569 288 LPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKP 342 (362)
Q Consensus 288 lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp 342 (362)
||+..+.+|.-.+... .+| .++|+.+|++...|.++...+|+++++.
T Consensus 136 L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 136 LPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp SCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 8999999998766553 232 3689999999999999999999998753
No 107
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=38.46 E-value=17 Score=25.33 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.9
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQRK 337 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~Rr 337 (362)
...||+.+|++...|+.|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999988654
No 108
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=38.24 E-value=26 Score=27.07 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 282 KKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 282 krkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
......|++..+++|.-.. + .+ .-.++|+.+|++.+.|.+...+.+++..
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~-~----G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVE-K----GF----TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp -----CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3445679999999997665 3 22 4578999999999999999999988854
No 109
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.17 E-value=18 Score=26.38 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|+.|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46899999999999999998754
No 110
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=37.89 E-value=12 Score=30.12 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.||+..+.++.-.|.. .+ .-.++|+.+|++...|.++...+|++.++..
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 3899999999776554 22 3468999999999999999999999987654
No 111
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=36.50 E-value=77 Score=24.38 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCChhhHhhhhhhhhh
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTE-ADKVALAESTGLDQRQINNWFINQRK 337 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~-~eK~~LA~~TgLs~kQI~nWF~N~Rr 337 (362)
+.+++.+.+...-..+..+- .-|++. .....+|+.+|++..+|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45688888654444443310 012332 35678999999999999999765443
No 112
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.65 E-value=19 Score=25.37 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|+.|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998743
No 113
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=35.45 E-value=55 Score=29.86 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCC
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWK 341 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kk 341 (362)
....|++..+++|.-. .+ . ..-.++|+.+|++.+.|++...|.++|..-
T Consensus 194 ~~~~Lt~re~~vl~~~-~~----G----~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 194 SNMPLSQREYDIFHWM-SR----G----KTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCCHHHHHHHHHH-HT----T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CcCCCCHHHHHHHHHH-Hc----C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3457999999999554 34 2 235689999999999999999999999643
No 114
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=35.01 E-value=21 Score=25.21 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 115
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.98 E-value=22 Score=25.17 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 46799999999999999998754
No 116
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=33.61 E-value=23 Score=24.46 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQRK 337 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~Rr 337 (362)
...||+.+|++...|+.|..+.+.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999887554
No 117
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=32.91 E-value=91 Score=25.61 Aligned_cols=51 Identities=10% Similarity=-0.057 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHh------CCChhhHhhhhhhhhhh
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTEADKVA-LAEST------GLDQRQINNWFINQRKR 338 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~-LA~~T------gLs~kQI~nWF~N~RrR 338 (362)
+.+++.+....+..++.+ +|--+..+-.. |.+.. .++..+|..|+...+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 456788888888888877 56556554333 32221 48999999998765554
No 118
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.56 E-value=25 Score=25.00 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|..|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998865
No 119
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=31.94 E-value=9.7 Score=32.70 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
.||+..+.+|.-.|... -.-.++|+.+|++...|..++..+|+++|
T Consensus 198 ~L~~~~r~vl~l~~~~g--------~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD--------QTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC--------CCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 47888888887755442 34468999999999999999999988864
No 120
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=31.87 E-value=24 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhHhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~ 335 (362)
...||+.+|++...|..|..+.
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4579999999999999999876
No 121
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=31.82 E-value=30 Score=25.19 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|+.|..+.+
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998743
No 122
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=31.57 E-value=34 Score=23.44 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHHHhCCChhhHhhhhhhhhhhcCCCC
Q 038569 315 VALAESTGLDQRQINNWFINQRKRHWKPS 343 (362)
Q Consensus 315 ~~LA~~TgLs~kQI~nWF~N~RrR~kkp~ 343 (362)
.++|+.+|++...|.++..+.+++.+...
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 58999999999999999999999976644
No 123
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=31.45 E-value=25 Score=24.59 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHhCCChhhHhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~ 335 (362)
...||+.+|++...|+.|..+.
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4679999999999999999875
No 124
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=30.84 E-value=26 Score=27.86 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCc
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESV 346 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~ 346 (362)
.||+..+.++.-.|...-..+ -.-.++|+.+|++...|.+....+++++|+.....
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~----~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~ 74 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTD----YTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE 74 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999987765210012 24568999999999999999999999988876543
No 125
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=30.40 E-value=29 Score=25.61 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
..+||+.+|++...|+.|..+.+
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998875
No 126
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=30.06 E-value=1.6e+02 Score=23.08 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=40.8
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhc--CCCCCCHHHHH----HHHHHhCCCh-hhHhhhhhhhhhhc
Q 038569 280 SKKKKKGKLPKEARQILFDWWNLHY--NWPYPTEADKV----ALAESTGLDQ-RQINNWFINQRKRH 339 (362)
Q Consensus 280 ~kkrkr~~lpke~~~iL~~wf~~H~--~nPYPs~~eK~----~LA~~TgLs~-kQI~nWF~N~RrR~ 339 (362)
.+++.+..+..+.-..|..|+.+.. .-| ||...-. .|+...|++. +-=+.|+.+..+|+
T Consensus 65 ~~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 65 CRKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp TCCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 3455566678889999999998754 334 6665544 4566677652 33467999988886
No 127
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=29.54 E-value=1.8e+02 Score=27.02 Aligned_cols=75 Identities=19% Similarity=0.182 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhccchhhhhhhhccCCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-HhCCChhhHhhhhhhhh
Q 038569 258 RETKDNLIRKYGGYISTLKHEFSKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAE-STGLDQRQINNWFINQR 336 (362)
Q Consensus 258 ~eLk~~L~rkys~~i~~lk~e~~kkrkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~-~TgLs~kQI~nWF~N~R 336 (362)
++.-.+|+.++...|..++......+....++.+-..++...+..+=++ . ..||+ .-+=+..||.+.|.|.|
T Consensus 106 kQ~~~~L~~~~~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKD------W-~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 106 KQTNSALKEKLDGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRD------F-QAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp HHHHHHHHHHSTTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSC------H-HHHHHHHSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcC------H-HHHHHHcCCCCHHHHHHHHHHHH
Confidence 3344556666766777777655566778899999998888888875221 2 22333 45689999999999999
Q ss_pred hhc
Q 038569 337 KRH 339 (362)
Q Consensus 337 rR~ 339 (362)
+|.
T Consensus 179 KRl 181 (235)
T 2iw5_B 179 RRF 181 (235)
T ss_dssp TTT
T ss_pred HHh
Confidence 884
No 128
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=28.67 E-value=1.1e+02 Score=23.15 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCC-------ChhhHhhhhhh
Q 038569 284 KKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGL-------DQRQINNWFIN 334 (362)
Q Consensus 284 kr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgL-------s~kQI~nWF~N 334 (362)
++.+++.+....+..++.+ +|.-+..+-.......|+ +...|..|+..
T Consensus 72 ~~~~l~~~~~~~i~~~~~~---~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 72 KPRIATPEIENRIEEYKRS---SPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CCCSSCSTHHHHHHHTTTT---CTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CCCcCCHHHHHHHHHHHHh---CcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 3456788788888888766 566665543333223374 88999998753
No 129
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=28.62 E-value=28 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|+.|..+.+
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 35799999999999999997754
No 130
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=28.35 E-value=29 Score=26.10 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
..+||+.+|++...|+.|..+.+
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 46799999999999999998754
No 131
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=27.54 E-value=32 Score=24.74 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|..|..+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 132
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=27.53 E-value=29 Score=24.92 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|+.|..+.+
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998753
No 133
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=27.00 E-value=1.5e+02 Score=23.77 Aligned_cols=50 Identities=8% Similarity=-0.034 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHH-HHHHh----C--CChhhHhhhhhhhhh
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTEADKVA-LAEST----G--LDQRQINNWFINQRK 337 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~-LA~~T----g--Ls~kQI~nWF~N~Rr 337 (362)
+.+++.+....+..++.+ +|.-+..+-.. |.+.. | ++...|..|+.....
T Consensus 88 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~ 144 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQ---NPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQ 144 (149)
T ss_dssp CSSSCHHHHHHHHHHHHH---CTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC--
T ss_pred CCCCCHHHHHHHHHHHHh---CcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhc
Confidence 456888888889999887 56555544322 22221 5 799999999865444
No 134
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=26.42 E-value=33 Score=25.63 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|+.|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998753
No 135
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=26.30 E-value=38 Score=29.91 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=38.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 283 KKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 283 rkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
.+...|++..+.+|. |+.+ .+ .-.++|+.+|++...|.+...+.|+|..
T Consensus 171 ~~~~~Lt~~e~~vl~-~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 171 NPKQMLSPREMLCLV-WASK----GK----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp CGGGSCCHHHHHHHH-HHHT----TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCHHHHHHHH-HHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 345679999999994 4444 32 3468999999999999999999999864
No 136
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=25.83 E-value=68 Score=29.20 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCch--HHHHHHHHHHHHHhhhhcC
Q 038569 183 ETYCDILVKYKSDLSKPY--DEASSFLNNMETQLSNLCN 219 (362)
Q Consensus 183 e~Yc~~L~kykeEL~kp~--~EA~~Fc~~iE~QL~~L~~ 219 (362)
..|..-|-....-|+.+. .|.+.+++++-..|..+|+
T Consensus 82 l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 82 LEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 457777777777787774 6999999999999999996
No 137
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.02 E-value=77 Score=24.89 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038569 285 KGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 285 r~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...++.+.+..+...+.. .+ ...++|+.+|++...|..|+...+
T Consensus 4 ~~~~s~~~r~~i~~~~~~----G~----s~~~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp SCCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHSGG
T ss_pred cccCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHccc
Confidence 346788877666666544 22 256889999999999999997644
No 138
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.70 E-value=37 Score=24.13 Aligned_cols=19 Identities=21% Similarity=0.574 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChhhHhhhh
Q 038569 314 KVALAESTGLDQRQINNWF 332 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF 332 (362)
...||+.+|+++.-|+.|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 4679999999999999998
No 139
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=24.59 E-value=29 Score=27.64 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=17.6
Q ss_pred CCcccHHHHHHHHHHHHHHHHhc
Q 038569 175 DPELDEFMETYCDILVKYKSDLS 197 (362)
Q Consensus 175 dpELDqFMe~Yc~~L~kykeEL~ 197 (362)
.-+|+.|+..|+.+|.....-|-
T Consensus 64 ~~~l~~F~~~Y~~v~K~~M~~LK 86 (91)
T 2w9j_A 64 LDYFTDFFQSYAEVXKGQIVGLK 86 (91)
T ss_dssp GGGHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHhCCcccc
Confidence 35899999999999998876553
No 140
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=24.41 E-value=39 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
..+||+.+|++...|..|-.+.+
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 35799999999999999998754
No 141
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=24.36 E-value=33 Score=28.31 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcCCCCCCc
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESV 346 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~kkp~e~~ 346 (362)
..||+..+.+|.-.+.. .+ .-.++|+.+|++...|.++...+|+++++.....
T Consensus 92 ~~Lp~~~r~vl~L~~~~----g~----s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~ 144 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAME----GF----SPEDAAYLIEVDTSEVETLVTEALAEIEKQTRAL 144 (157)
T ss_dssp TTSCTTHHHHHTTTSSS----CC----CHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HhCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35888888888654333 22 3468999999999999999999999998876543
No 142
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=24.06 E-value=39 Score=24.92 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~ 335 (362)
...||+.+|++...|..|..+.
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4689999999999999999875
No 143
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=24.02 E-value=52 Score=28.96 Aligned_cols=49 Identities=12% Similarity=0.020 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 283 KKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 283 rkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
.....|++..+.+|.- +.+ .+ .-.++|+.+|++...|.+...|.|+|.-
T Consensus 169 ~~~~~Lt~~e~~vl~~-~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 169 EDAAWLDPKEATYLRW-IAV----GK----TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp ECCCCCCHHHHHHHHH-HTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHH-HHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 3456799999999854 433 32 3468999999999999999999999853
No 144
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.24 E-value=44 Score=22.51 Aligned_cols=21 Identities=14% Similarity=0.434 Sum_probs=18.2
Q ss_pred HHHHHHHhCCChhhHhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFIN 334 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N 334 (362)
..++|+.+|++...|..|+..
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 568999999999999999753
No 145
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.08 E-value=64 Score=26.55 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~R 336 (362)
..++.+.+..+..++... + ...++|+.+|++...|..|+...+
T Consensus 24 ~~~s~e~r~~ii~l~~~G----~----s~~~IA~~lgis~~TV~rwl~r~~ 66 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG----V----RPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT----C----CHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred CCCCHHHHHHHHHHHHcC----C----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468888776666666542 1 346789999999999999987543
No 146
>2izy_A CAMP-dependent protein kinase regulatory subunit II; D/D, RII, PKA, acetylation, transferase, CAMP- binding, phosphorylation, nucleotide-binding; 2.2A {Mus musculus} SCOP: a.31.1.1 PDB: 1l6e_A 1r2a_A 2drn_A 2h9r_A
Probab=22.67 E-value=1.1e+02 Score=21.87 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=14.9
Q ss_pred HHhhCCChHHHHHHHHhhHhccCchhhh
Q 038569 121 QIASHPLYPKLLQAYIDCQKVGASPEIA 148 (362)
Q Consensus 121 ~I~sHPLYp~Ll~Ayi~C~KVgaPpd~~ 148 (362)
+|..+|=++.||..|+.+....-|.|++
T Consensus 3 ~~~ip~~l~~lL~~f~~evlr~qP~Di~ 30 (54)
T 2izy_A 3 HIQIPPGLTELLQGYTVEVLRQQPPDLV 30 (54)
T ss_dssp --CCCTTHHHHHHHHHHHHHHHCCSCHH
T ss_pred ccccCccHHHHHHHHHHHHHHHCCCCHH
Confidence 3445555666666666655555555543
No 147
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.64 E-value=46 Score=24.88 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
...||+.+|++...|..|..+.+
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998854
No 148
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=22.63 E-value=44 Score=25.70 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~ 335 (362)
..+||+.+|++...|..|..++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 4679999999999999999984
No 149
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=22.45 E-value=44 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=18.1
Q ss_pred HHHHHHHhCCChhhHhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFIN 334 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N 334 (362)
-.+||+.+|++...|.+|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 356999999999999999764
No 150
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=22.10 E-value=88 Score=27.19 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHhCCCh
Q 038569 308 YPTEADKVALAESTGLDQ 325 (362)
Q Consensus 308 YPs~~eK~~LA~~TgLs~ 325 (362)
.|+.+.-..||+.+|++.
T Consensus 56 ~p~~~~l~~ia~~l~v~~ 73 (236)
T 3bdn_A 56 ALNAYNAALLAKILKVSV 73 (236)
T ss_dssp CCCHHHHHHTTTTTTSCG
T ss_pred CCCHHHHHHHHHHhCcCH
Confidence 455555555565555554
No 151
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=21.69 E-value=47 Score=23.96 Aligned_cols=22 Identities=27% Similarity=0.221 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhHhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~ 335 (362)
...||+.+|++...|..|-.+.
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 4579999999999999998776
No 152
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=21.66 E-value=96 Score=23.59 Aligned_cols=42 Identities=7% Similarity=0.090 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038569 287 KLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 287 ~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~R 336 (362)
.++.+.+..+..++.. .+ ....+|+.+|++...|..|+...+
T Consensus 17 ~~s~~~r~~i~~~~~~----g~----s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD----GI----RPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5788877666666544 22 246789999999999999987654
No 153
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=21.66 E-value=46 Score=21.47 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHhhCCChHHHHHHHHhhH
Q 038569 119 RAQIASHPLYPKLLQAYIDCQ 139 (362)
Q Consensus 119 Ka~I~sHPLYp~Ll~Ayi~C~ 139 (362)
--+|++.|||.-|+.|--+.+
T Consensus 6 ipkiissplfktllsavgsal 26 (33)
T 1xc0_A 6 IPKIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp HHHHTTTTTHHHHHHHHHHHT
T ss_pred hhHHHccHHHHHHHHHHHHHh
Confidence 358999999999998865443
No 154
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.83 E-value=50 Score=24.43 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N~R 336 (362)
..+||+.+|++...|..|..+.+
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 155
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=20.67 E-value=51 Score=24.04 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChhhHhhhhhh
Q 038569 314 KVALAESTGLDQRQINNWFIN 334 (362)
Q Consensus 314 K~~LA~~TgLs~kQI~nWF~N 334 (362)
...||+.+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457999999999999999987
No 156
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.38 E-value=1.6e+02 Score=22.33 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 038569 292 ARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQ 335 (362)
Q Consensus 292 ~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~ 335 (362)
....+..|...|+..+ ++ -..||+..|+++.++...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~---~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-IT---IEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CC---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CC---HHHHHHHHCCCHHHHHHHHHHH
Confidence 3556778888887666 44 4568888899998888877653
No 157
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=20.32 E-value=1.1e+02 Score=27.02 Aligned_cols=49 Identities=12% Similarity=0.088 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhcC
Q 038569 283 KKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHW 340 (362)
Q Consensus 283 rkr~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~RrR~k 340 (362)
.....||+..+++|.- +.+ .+ .-.++|+.+|++++.|.+-..|.++|..
T Consensus 171 ~~~~~Lt~re~~vl~~-~~~----G~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 171 ESNVRLTARETEMLKW-TAV----GK----TYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp GGGCCCCHHHHHHHHH-HHT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHH-HHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 4456799999999954 444 22 3568999999999999999999998853
No 158
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=20.21 E-value=52 Score=22.81 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=19.7
Q ss_pred HHHHHHHhC--CChhhHhhhhhhhh
Q 038569 314 KVALAESTG--LDQRQINNWFINQR 336 (362)
Q Consensus 314 K~~LA~~Tg--Ls~kQI~nWF~N~R 336 (362)
...||+.+| ++...|+.|..+.+
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 367999999 99999999998753
No 159
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.13 E-value=2.5e+02 Score=21.36 Aligned_cols=54 Identities=6% Similarity=0.124 Sum_probs=40.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhC--CChhhHhhhhhh
Q 038569 281 KKKKKGKLPKEARQILFDWWNLH--YNWPYPTEADKVALAESTG--LDQRQINNWFIN 334 (362)
Q Consensus 281 kkrkr~~lpke~~~iL~~wf~~H--~~nPYPs~~eK~~LA~~Tg--Ls~kQI~nWF~N 334 (362)
..++...++.+....|+.+|..- -.+.|.+..|-..+.+..| ++..+|..+|.-
T Consensus 23 ~~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 23 SEQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp TTCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred hhcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34456678889888898888774 3478899999888888877 566777777653
No 160
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=20.13 E-value=78 Score=22.73 Aligned_cols=41 Identities=10% Similarity=-0.023 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 038569 286 GKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQR 336 (362)
Q Consensus 286 ~~lpke~~~iL~~wf~~H~~nPYPs~~eK~~LA~~TgLs~kQI~nWF~N~R 336 (362)
+.++.+....++.-..- ...+||+.+|++...|+.|-.+.+
T Consensus 9 ~~~~g~~lr~~R~~~gl----------tq~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSL----------TQKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTC----------CHHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCC----------CHHHHHHHhCcCHHHHHHHHcCCC
Confidence 45666666656544222 346799999999999999988764
Done!