Citrus Sinensis ID: 038569

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MDELLYGTLHSTSVDYSLQQQQQEAALGNMVSWGSYQNNNNNNNNNNDDDDDDDNIEAYGGEHEIGNISAVYGSEPEQMGSGNNSSSSSDAASSLMVAVAEIQRNNTTSSEEQVSSAIRAQIASHPLYPKLLQAYIDCQKVGASPEIANVLDDIRREGDVSNRNWVVSSCCWGADPELDEFMETYCDILVKYKSDLSKPYDEASSFLNNMETQLSNLCNVVSRSHGSDEADPGGSWEEDLSGGETEVSECFRMPPVDRETKDNLIRKYGGYISTLKHEFSKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQFNLMDSVCGPIVIND
ccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHcHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHccccccccccc
***LLYGTLHSTSVD********************************************************************************************************AQIASHPLYPKLLQAYIDCQKVGASPEIANVLDDIRREGDVSNRNWVVSSCCWGADPELDEFMETYCDILVKYKSDLSKPYDEASSFLNNMETQL**LC**VS****************************************NLIRKYGGYIS*******************RQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQFNLMDSVCGP*V***
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDELLYGTLHSTSVDYSLQQQQQEAALGNMVSWGSYQNNNNNNNNNNDDDDDDDNIEAYGGEHEIGNISAVYGSEPEQMGSGNNSSSSSDAASSLMVAVAEIQRNNTTSSEEQVSSAIRAQIASHPLYPKLLQAYIDCQKVGASPEIANVLDDIRREGDVSNRNWVVSSCCWGADPELDEFMETYCDILVKYKSDLSKPYDEASSFLNNMETQLSNLCNVVSRSHGSDEADPGGSWEEDLSGGETEVSECFRMPPVDRETKDNLIRKYGGYISTLKHEFSKKKKKGKLPKEARQILFDWWNLHYNWPYPTEADKVALAESTGLDQRQINNWFINQRKRHWKPSESVQFNLMDSVCGPIVIND

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Homeobox protein knotted-1-like 1 Probable transcription factor that may be involved in shoot formation during early embryogenesis.probableQ9FP29
Homeobox protein knotted-1-like 6 Plays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.probableQ84JS6

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1PUF, chain B
Confidence level:very confident
Coverage over the Query: 282-347
View the alignment between query and template
View the model in PyMOL