Query 038571
Match_columns 321
No_of_seqs 123 out of 153
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:33:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038571.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038571hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 2.3E-20 8E-25 146.5 5.3 84 35-127 1-84 (86)
2 3sjm_A Telomeric repeat-bindin 98.2 1.9E-06 6.5E-11 64.5 5.2 51 36-107 9-60 (64)
3 1ity_A TRF1; helix-turn-helix, 98.1 5.1E-06 1.7E-10 62.3 6.9 54 33-107 5-59 (69)
4 1w0t_A Telomeric repeat bindin 98.1 5.9E-06 2E-10 59.0 6.1 49 38-107 2-51 (53)
5 2d9a_A B-MYB, MYB-related prot 98.0 8.5E-06 2.9E-10 59.3 5.1 52 34-107 4-55 (60)
6 2elk_A SPCC24B10.08C protein; 98.0 2.3E-05 7.9E-10 57.1 7.1 48 38-106 9-56 (58)
7 2roh_A RTBP1, telomere binding 97.9 4.1E-05 1.4E-09 64.4 9.5 57 33-107 26-82 (122)
8 1guu_A C-MYB, MYB proto-oncoge 97.9 9.5E-06 3.3E-10 57.4 4.8 48 38-107 3-50 (52)
9 1x41_A Transcriptional adaptor 97.9 2.1E-05 7.1E-10 57.6 6.3 50 36-107 6-55 (60)
10 2dim_A Cell division cycle 5-l 97.9 1.8E-05 6.2E-10 59.3 5.3 52 34-107 5-56 (70)
11 1gvd_A MYB proto-oncogene prot 97.8 1.7E-05 5.8E-10 56.1 4.1 48 37-106 2-49 (52)
12 2yus_A SWI/SNF-related matrix- 97.8 6E-05 2.1E-09 58.6 6.8 49 34-105 14-62 (79)
13 2din_A Cell division cycle 5-l 97.7 8.8E-05 3E-09 55.0 7.2 51 36-110 7-57 (66)
14 2yum_A ZZZ3 protein, zinc fing 97.7 7.4E-05 2.5E-09 56.6 6.5 58 34-108 4-61 (75)
15 2juh_A Telomere binding protei 97.6 0.00012 3.9E-09 61.6 7.4 59 32-108 11-69 (121)
16 2ckx_A NGTRF1, telomere bindin 97.6 8.2E-05 2.8E-09 58.5 5.3 50 40-107 2-51 (83)
17 2aje_A Telomere repeat-binding 97.5 8.5E-05 2.9E-09 60.9 5.1 84 31-150 6-89 (105)
18 2cjj_A Radialis; plant develop 97.5 0.00019 6.6E-09 57.5 6.6 58 38-114 8-65 (93)
19 2cqq_A RSGI RUH-037, DNAJ homo 97.5 0.00033 1.1E-08 53.6 7.1 52 37-108 7-58 (72)
20 2cu7_A KIAA1915 protein; nucle 97.4 0.00033 1.1E-08 52.8 6.9 51 35-108 6-56 (72)
21 2cqr_A RSGI RUH-043, DNAJ homo 97.4 0.00011 3.7E-09 56.5 3.8 53 37-108 17-69 (73)
22 2llk_A Cyclin-D-binding MYB-li 97.3 0.00045 1.5E-08 53.1 6.3 49 35-107 20-68 (73)
23 2k9n_A MYB24; R2R3 domain, DNA 97.1 0.00052 1.8E-08 55.1 4.7 47 39-107 2-48 (107)
24 1gv2_A C-MYB, MYB proto-oncoge 97.0 0.00055 1.9E-08 54.5 3.9 48 37-106 3-50 (105)
25 3osg_A MYB21; transcription-DN 96.8 0.0013 4.4E-08 54.4 5.1 50 34-106 7-56 (126)
26 2k9n_A MYB24; R2R3 domain, DNA 96.7 0.0036 1.2E-07 50.2 6.8 49 37-108 52-100 (107)
27 1h8a_C AMV V-MYB, MYB transfor 96.7 0.0015 5.2E-08 53.8 4.7 50 36-107 25-74 (128)
28 3osg_A MYB21; transcription-DN 96.6 0.0027 9.2E-08 52.4 5.3 50 36-108 60-109 (126)
29 1gv2_A C-MYB, MYB proto-oncoge 96.3 0.0042 1.4E-07 49.3 4.7 48 37-107 55-102 (105)
30 3zqc_A MYB3; transcription-DNA 96.2 0.0013 4.5E-08 54.6 1.4 48 38-107 2-49 (131)
31 2ltp_A Nuclear receptor corepr 95.1 0.00087 3E-08 52.8 0.0 52 35-109 13-64 (89)
32 1h89_C C-MYB, MYB proto-oncoge 96.0 0.0062 2.1E-07 51.8 4.5 50 36-107 56-105 (159)
33 1h89_C C-MYB, MYB proto-oncoge 95.5 0.0022 7.5E-08 54.6 -0.1 49 37-107 5-53 (159)
34 3zqc_A MYB3; transcription-DNA 95.5 0.008 2.7E-07 49.8 3.3 50 36-108 52-101 (131)
35 1h8a_C AMV V-MYB, MYB transfor 95.4 0.01 3.5E-07 48.8 3.7 49 36-107 77-125 (128)
36 1wgx_A KIAA1903 protein; MYB D 95.0 0.022 7.6E-07 43.8 4.0 52 38-108 8-59 (73)
37 1ign_A Protein (RAP1); RAP1,ye 93.6 0.039 1.3E-06 51.3 3.3 55 37-108 7-61 (246)
38 2eqr_A N-COR1, N-COR, nuclear 93.6 0.17 5.9E-06 36.8 6.1 48 33-103 7-54 (61)
39 1x58_A Hypothetical protein 49 91.3 0.27 9.3E-06 36.7 4.7 51 37-107 7-57 (62)
40 2iw5_B Protein corest, REST co 89.3 0.55 1.9E-05 43.4 5.9 47 35-104 130-176 (235)
41 2xag_B REST corepressor 1; ami 83.1 1.9 6.6E-05 43.5 6.6 44 36-102 378-421 (482)
42 1ug2_A 2610100B20RIK gene prod 80.4 19 0.00064 28.9 10.1 65 28-112 23-87 (95)
43 3hm5_A DNA methyltransferase 1 79.5 3.4 0.00012 33.0 5.6 56 39-113 31-87 (93)
44 4iej_A DNA methyltransferase 1 52.3 26 0.00091 27.9 5.5 56 39-113 31-87 (93)
45 1fex_A TRF2-interacting telome 51.4 14 0.00047 26.7 3.5 52 39-104 3-55 (59)
46 3fga_D Shugoshin-like 1; PP2A, 39.8 43 0.0015 23.6 4.3 31 266-296 3-41 (47)
47 4eef_G F-HB80.4, designed hema 37.5 3.3 0.00011 31.9 -1.8 45 38-101 20-64 (74)
48 1txp_A HnRNP C, heterogeneous 28.0 33 0.0011 21.7 2.0 17 294-310 9-25 (28)
49 2kwv_A RAD30 homolog B, DNA po 27.6 7 0.00024 27.7 -1.3 17 136-152 9-25 (48)
50 3zbh_A ESXA; unknown function, 27.6 1.8E+02 0.006 21.1 6.7 25 296-320 61-85 (99)
51 2lr8_A CAsp8-associated protei 32.8 13 0.00046 28.2 0.0 56 37-113 13-68 (70)
52 4ioe_A Secreted protein ESXB; 23.6 2.1E+02 0.0072 20.6 6.7 24 298-321 63-86 (93)
53 3gwk_C SAG1039, putative uncha 23.2 2.2E+02 0.0077 20.8 6.5 26 296-321 60-85 (98)
54 2dt7_A Splicing factor 3A subu 21.9 57 0.0019 21.7 2.4 21 100-120 10-30 (38)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.80 E-value=2.3e-20 Score=146.53 Aligned_cols=84 Identities=26% Similarity=0.545 Sum_probs=72.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH
Q 038571 35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKR 114 (321)
Q Consensus 35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~ 114 (321)
++|.++||.+||++||+++++++..|..+. ....+|++||+.|..+||+||+.||+.||+||...||+|++
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~---------~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSK---------SNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSS---------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccc---------cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999988886532 23579999999999999999999999999999999999999
Q ss_pred HHhhhhccccccc
Q 038571 115 WESQMKEEKQSFW 127 (321)
Q Consensus 115 wEr~~~~~~~SYW 127 (321)
+++.++.+.-+||
T Consensus 72 ~~~~sG~~~~~yf 84 (86)
T 2ebi_A 72 HDRGNGSAKMSYY 84 (86)
T ss_dssp CCCCCCCCCCCCC
T ss_pred hcccCCCCCCCCC
Confidence 9986633334454
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.18 E-value=1.9e-06 Score=64.46 Aligned_cols=51 Identities=20% Similarity=0.434 Sum_probs=39.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLV 107 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~ 107 (321)
.+...||..|-..|+++.... | . -.|..|+.++ ++ .|++.||++||.||+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~------G--------~----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKY------G--------E----GNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHcc------C--------C----CchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 345679999999999986532 1 1 1799999864 23 5999999999999975
No 3
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.14 E-value=5.1e-06 Score=62.31 Aligned_cols=54 Identities=22% Similarity=0.404 Sum_probs=43.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHH
Q 038571 33 SKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLV 107 (321)
Q Consensus 33 ~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~ 107 (321)
.++.+...||..|-..|+++.... | . .+|..|+.++- + .|++.||+.+|.|++.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~---~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKY------G--------E----GNWSKILLHYK---FNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHH------C--------S----SCHHHHHHHSC---CSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH------C--------C----CcHHHHHHHcC---cCCCCHHHHHHHHHHHcC
Confidence 355667889999999999986532 1 1 18999999873 4 7999999999999986
No 4
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.10 E-value=5.9e-06 Score=58.95 Aligned_cols=49 Identities=22% Similarity=0.380 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHH
Q 038571 38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLV 107 (321)
Q Consensus 38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~ 107 (321)
...||..|-..|+++.... | . ..|..|+.++ ++ .|++.||+.+|.||+.
T Consensus 2 r~~WT~eEd~~L~~~v~~~------G--------~----~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKY------G--------E----GNWSKILLHY---KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C--------c----CCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence 4689999999999986532 1 1 2899999987 34 5999999999999974
No 5
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.97 E-value=8.5e-06 Score=59.32 Aligned_cols=52 Identities=29% Similarity=0.440 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
+.-....||..|-..|+++.... | . .+|..|+.+|- .|++.||+.+|.|++.
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQF------G--------Q----QDWKFLASHFP----NRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHT------C--------T----TCHHHHHHHCS----SSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh------C--------C----CCHHHHHHHcc----CCCHHHHHHHHHHHcC
Confidence 34556789999999999986532 1 1 28999999974 5999999999999763
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.95 E-value=2.3e-05 Score=57.13 Aligned_cols=48 Identities=23% Similarity=0.533 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571 38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL 106 (321)
Q Consensus 38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl 106 (321)
...||..|-..|+++.... | . ..|..||.++ |..|++.||+.+|.|++
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G--------~----~~W~~IA~~~---~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G--------L----GNWADIADYV---GNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T--------T----TCHHHHHHHH---CSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C--------c----CCHHHHHHHH---CCCCCHHHHHHHHHHHc
Confidence 3569999999999986522 1 0 2899999988 33699999999999864
No 7
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.95 E-value=4.1e-05 Score=64.42 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=44.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 33 SKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 33 ~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
+++.....||..|...|+++.... .. -+|..|+......=-.|+.+||++||.||+.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~----G~--------------g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk 82 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHL----GT--------------GRWRDVKFRAFENVHHRTYVDLKDKWKTLVH 82 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHH----SS--------------SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH----CC--------------CChHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 456667899999999999986632 11 1899999975421137999999999999986
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.95 E-value=9.5e-06 Score=57.35 Aligned_cols=48 Identities=35% Similarity=0.649 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
...||..|-..|+++.... | . ..|..||.++- .|++.||+.+|.|++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN------G--------T----DDWKVIANYLP----NRTDVQCQHRWQKVLN 50 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH------C--------S----SCHHHHHHTST----TCCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHh------C--------C----CCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 5689999999999987632 1 1 17999999974 6999999999999873
No 9
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.91 E-value=2.1e-05 Score=57.58 Aligned_cols=50 Identities=22% Similarity=0.467 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
-....||..|-..|+++.... +. ..|..||.++- .|++.||+.+|.|++.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~--------------G~----~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDC--------------GF----GNWQDVANQMC----TKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHT--------------CT----TCHHHHHHHHT----TSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHH--------------Cc----CcHHHHHHHhC----CCCHHHHHHHHHHHcc
Confidence 345689999999999986521 10 28999999993 5999999999998764
No 10
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.8e-05 Score=59.33 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
+.-+...||..|-..|+.+.... | . ..|..|+.+|- .|++.||+.+|.|.+.
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKY------G--------K----NQWSRIASLLH----RKSAKQCKARWYEWLD 56 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHT------C--------S----SCHHHHHHHST----TCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------C--------c----CCHHHHHHHhc----CCCHHHHHHHHHHHcC
Confidence 34566799999999999886532 1 1 28999999985 6999999999999764
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.81 E-value=1.7e-05 Score=56.14 Aligned_cols=48 Identities=33% Similarity=0.541 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL 106 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl 106 (321)
+...||..|-..|+++.... | . ..|..|+.+|- .|++.||+.+|.|.+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~------G--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKY------G--------P----KRWSVIAKHLK----GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHH------C--------T----TCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHH------C--------c----ChHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 35689999999999986532 1 1 16999999973 699999999999876
No 12
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.75 E-value=6e-05 Score=58.57 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=39.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 038571 34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNL 105 (321)
Q Consensus 34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NL 105 (321)
.......||..|.+.|+++.... + ..|..||.++- .|++.||+.+|.+|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~--------------G-----~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMY--------------K-----DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHS--------------S-----SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHh--------------C-----CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 34456799999999999986521 1 17999999984 59999999999987
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.73 E-value=8.8e-05 Score=54.95 Aligned_cols=51 Identities=24% Similarity=0.537 Sum_probs=40.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFR 110 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYK 110 (321)
-....||..|-..|+++... .+ .+|..||. +- | |++.||+.+|.+++..-.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~--------------~g-----~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKL--------------MP-----TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHH--------------CT-----TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH--------------cC-----CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHh
Confidence 44568999999999998331 11 28999999 53 5 999999999999998643
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=7.4e-05 Score=56.59 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
+.-....||..|-..|+++.... ..+ .. ...+|..||.++- .|+..||+.+|.|++..
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~----g~~-----~~----~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKY----PPE-----EV----ESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHS----CCC-----SC----HHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh----CCC-----CC----CcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 34456789999999999986522 110 00 1148999999984 59999999999887753
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.64 E-value=0.00012 Score=61.59 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 32 RSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 32 ~~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
..++.....||..|...|+++.... .. -+|..|+......--.|+.+||++||.||+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~----G~--------------G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHL----GT--------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHH----GG--------------GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHH----CC--------------CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3456667799999999999986632 11 18999999875422379999999999999973
No 16
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=97.58 E-value=8.2e-05 Score=58.50 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 40 RWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 40 ~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
.||..|...|+.+.... +. -+|..|+..-...=-.|+.+||++||.||+.
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~--------------g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk 51 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GT--------------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 51 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CS--------------SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CC--------------CCcHHHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 69999999999986632 11 1899999863211127999999999999987
No 17
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=97.54 E-value=8.5e-05 Score=60.93 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Q 038571 31 DRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFR 110 (321)
Q Consensus 31 ~~~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYK 110 (321)
...++.....||..|...|+++.... .. -+|..|+......=-.|+.+||++||.||+..-
T Consensus 6 ~~~~rr~r~~WT~EEd~~L~~gV~k~----G~--------------g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~- 66 (105)
T 2aje_A 6 EDPQRRIRRPFSVAEVEALVQAVEKL----GT--------------GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA- 66 (105)
T ss_dssp ---CCCCCCSCCHHHHHHHHHHHHHH----CS--------------SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT-
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHh----CC--------------CChHHHHHHhccccCCCCHHHHHHHHHHHHhhc-
Confidence 34466677899999999999986632 11 189999985421003699999999999999721
Q ss_pred HHHHHHhhhhcccccccccCHHHHhhcCCCCCchHHHHHH
Q 038571 111 KIKRWESQMKEEKQSFWVMRNESRKQMKLPGYFDREVYDV 150 (321)
Q Consensus 111 kVr~wEr~~~~~~~SYW~M~~~eRke~~LP~~Fd~EVyda 150 (321)
.+++..|+..-+|..|-.-|-++
T Consensus 67 -----------------~~~p~~~rg~~~P~~~l~rv~~~ 89 (105)
T 2aje_A 67 -----------------KISPQQRRGEPVPQELLNRVLNA 89 (105)
T ss_dssp -----------------TCCTTTTTCCSCCCHHHHHHHHH
T ss_pred -----------------cCCcccccCCCCCHHHHHHHHHH
Confidence 12333466778888776666653
No 18
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.50 E-value=0.00019 Score=57.54 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH
Q 038571 38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIKR 114 (321)
Q Consensus 38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr~ 114 (321)
...||..|-..|+++-...... . ..+|..||.++- .|+.+||+.+|.+|+.+.+.|..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~------------~---~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~ies 65 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKD------------T---PDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIES 65 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTT------------C---TTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC------------C---CchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhhc
Confidence 4579999999999986632111 1 249999999984 49999999999999998777743
No 19
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.45 E-value=0.00033 Score=53.62 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
..+.||..|-..|+++...... + . ..+|+.||+++ | |++.||+.+|..|..+
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~----~--------t---~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPG----G--------T---PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCT----T--------C---TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCC----C--------C---CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 3567999999999998763321 1 1 24999999997 4 9999999999999876
No 20
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.45 E-value=0.00033 Score=52.82 Aligned_cols=51 Identities=16% Similarity=0.328 Sum_probs=41.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
.-....||..|-..|+++.... + .+|..|+.+|- .|+..||+.+|.+++..
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~--------------G-----~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKF--------------G-----RRWTKISKLIG----SRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHT--------------C-----SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHH--------------C-----cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 3456789999999999976521 1 18999999884 59999999999998874
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.40 E-value=0.00011 Score=56.49 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
....||..|-..|+++....- .+ ...+|..||.++- .|+..||+.+|.+|+.|
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g----~~-----------~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYP----RG-----------SSDCWDKIARCVP----SKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSC----SS-----------SHHHHHHHGGGCS----SSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcC----CC-----------CCchHHHHHHHcC----CCCHHHHHHHHHHHHHc
Confidence 446799999999999866321 00 1259999999884 59999999999999865
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.31 E-value=0.00045 Score=53.07 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
.-....||..|-..|+++.... | .+|..||.+| | |+.+||+.+|..|..
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~------G-------------~kW~~IA~~l---g--Rt~~q~knRw~~L~~ 68 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKH------G-------------NDWATIGAAL---G--RSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHH------S-------------SCHHHHHHHH---T--SCHHHHHHHHHHCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C-------------CCHHHHHHHh---C--CCHHHHHHHHHHHHH
Confidence 3456789999999999986532 1 2799999998 4 999999999988753
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.07 E-value=0.00052 Score=55.14 Aligned_cols=47 Identities=28% Similarity=0.497 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
..||..|-..|+.+.... | . ..|..|+.+|- .|++.||+.+|.|.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~------g--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRY------G--------A----KDWIRISQLMI----TRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHH------C--------S----SCHHHHHHHTT----TSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHH------C--------C----CCHHHHhhhcC----CCCHHHHHHHHHHHHc
Confidence 579999999999986532 1 1 17999999984 6999999999998664
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.96 E-value=0.00055 Score=54.46 Aligned_cols=48 Identities=31% Similarity=0.526 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL 106 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl 106 (321)
+...||..|-..|+.+.... | . ..|..|+.+|- .|++.||+.+|.|.+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~------g--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKY------G--------P----KRWSVIAKHLK----GRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHH------C--------T----TCHHHHHTTST----TCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHh------C--------C----CcHHHHhhhhc----CCCHHHHHHHHHhcc
Confidence 35689999999999886522 1 1 16999999873 699999999999965
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.82 E-value=0.0013 Score=54.36 Aligned_cols=50 Identities=32% Similarity=0.561 Sum_probs=40.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 038571 34 KTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLL 106 (321)
Q Consensus 34 r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl 106 (321)
+..+...||..|-..|+.+.... | ..|..|+.+|- .|++.||+.+|.|.+
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~------G-------------~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQH------G-------------SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHH------T-------------TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 45567789999999999887632 1 17999998864 699999999999976
No 26
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.71 E-value=0.0036 Score=50.18 Aligned_cols=49 Identities=29% Similarity=0.580 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
....||..|-..|+.+.... + .+|..|+.+|- .|+.+||+.+|.+|+..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~--------------G-----~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEY--------------G-----PKWNKISKFLK----NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHT--------------C-----SCHHHHHHHHS----SSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHh--------------C-----cCHHHHHHHCC----CCCHHHHHHHHHHHHhh
Confidence 46789999999999976532 1 28999999883 59999999999999875
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.70 E-value=0.0015 Score=53.79 Aligned_cols=50 Identities=30% Similarity=0.531 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
-....||..|-..|+.+.... | . ..|..|+.+|- .|++.||+.+|.|++.
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~------g--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKY------G--------P----KRWSDIAKHLK----GRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHT------C--------S----CCHHHHHHHSS----SCCHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHH------C--------C----CCHHHHHHHhc----CCcHHHHHHHHHHhcc
Confidence 345789999999999876521 1 1 16999999874 6999999999999763
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.56 E-value=0.0027 Score=52.40 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
-....||..|-..|+.+.... | .+|..|+.++- .|+..||+.+|.+|+..
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEY------G-------------RQWAIIAKFFP----GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHHTTST----TCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 345689999999999986533 1 17999998763 59999999999999874
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.30 E-value=0.0042 Score=49.30 Aligned_cols=48 Identities=17% Similarity=0.479 Sum_probs=39.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
....||..|-..|+.+.... | .+|..|+.++- .|+..||+.+|.+|+.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHH------S-------------SCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred cccCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 45789999999999986532 1 27999998762 5999999999999875
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.21 E-value=0.0013 Score=54.55 Aligned_cols=48 Identities=29% Similarity=0.488 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
.+.||..|-..|+.+.... | . ..|..|+.+|- .|++.||+.+|.|.+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~------g--------~----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKEN------G--------P----QNWPRITSFLP----NRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHH------C--------S----CCGGGGTTSCT----TSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHh------C--------c----CCHHHHHHHHC----CCCHHHHHHHHhhccC
Confidence 4679999999999876532 1 0 16999998873 6999999999999764
No 31
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.14 E-value=0.00087 Score=52.77 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=41.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Q 038571 35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDF 109 (321)
Q Consensus 35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dY 109 (321)
.-....||..|-..||++.... + .+|..||.+|- .|+..||+.+|.|++..+
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~--------------G-----~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEH--------------G-----RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 3345689999999999886532 1 27999999985 599999999999988754
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.96 E-value=0.0062 Score=51.82 Aligned_cols=50 Identities=30% Similarity=0.482 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
-....||..|-..|+.+.... | . ..|..||.+|- .|++.||+.+|.|++.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~------g--------~----~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY------G--------P----KRWSVIAKHLK----GRIGKQCRERWHNHLN 105 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------C--------S----CCHHHHHHTST----TCCHHHHHHHHHHTTC
T ss_pred cCCCCCChHHHHHHHHHHHHh------C--------c----ccHHHHHHHcC----CCCHHHHHHHHHHHhC
Confidence 346789999999999886532 1 1 16999999873 6999999999998763
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.53 E-value=0.0022 Score=54.63 Aligned_cols=49 Identities=35% Similarity=0.647 Sum_probs=9.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
....||..|-..|+.+.... + ...|..|+.+|- .|++.||+.+|.|.+.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~--------------g----~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~l~ 53 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQN--------------G----TDDWKVIANYLP----NRTDVQCQHRWQKVLN 53 (159)
T ss_dssp ------------------------------------------------------------CHHHHHHTTTC
T ss_pred CCCCCCHHHHHHHHHHHHHh--------------C----CCCHHHHHHHcC----CCCHHHHHHHHHHccC
Confidence 35679999999999875421 0 127999999984 5999999999999764
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=95.52 E-value=0.008 Score=49.78 Aligned_cols=50 Identities=18% Similarity=0.414 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
-....||..|-..|+.+.... + .+|..|+.++- .|+..||+.+|.+++..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~--------------G-----~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKL--------------G-----SKWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHS--------------C-----SCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred ccCCCCCHHHHHHHHHHHHHH--------------C-----cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 345689999999999875421 1 27999998764 59999999999998863
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.44 E-value=0.01 Score=48.79 Aligned_cols=49 Identities=16% Similarity=0.478 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
-....||..|-..|+.+.... | .+|..|+.++- .|+..||+.+|.+|+.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~------G-------------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRL------G-------------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C-------------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred cccccCCHHHHHHHHHHHHHH------C-------------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 345789999999999986532 1 28999998763 5999999999999875
No 36
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.96 E-value=0.022 Score=43.81 Aligned_cols=52 Identities=17% Similarity=0.344 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
...||..|...|.++....... . ..+|+.||+++- .|++.+|+.+|.-|...
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~------------t---p~rWe~IA~~V~----gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKH------------K---PGFWSEVAAAVG----SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSS------------S---SSHHHHHHHHTT----TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCC------------C---ccHHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 4579999999999986633211 1 249999999874 39999999999888543
No 37
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.61 E-value=0.039 Score=51.27 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=40.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVD 108 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~d 108 (321)
....||..|=..|+++.+..-.+ | . ....|..||.+|- .|+.+||+.+|.++|..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~----r-------~--ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTR----R-------T--THTLYDEISHYVP----NHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGG----T-------T--CSHHHHHHTTTST----TSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcC----c-------c--ccccHHHHHHHcC----CCCHHHHHHHHHHHHhh
Confidence 34589999999999987753221 1 0 0125999999876 69999999999998753
No 38
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.57 E-value=0.17 Score=36.77 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=37.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHH
Q 038571 33 SKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWG 103 (321)
Q Consensus 33 ~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~ 103 (321)
..++....||..|...|+++.... | ..|..|+.++- .|+..||...|-
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~------g-------------k~w~~Ia~~l~----~rt~~~~v~~Yy 54 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQH------P-------------KNFGLIASYLE----RKSVPDCVLYYY 54 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHS------T-------------TCHHHHHHHCT----TSCHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHh------C-------------CCHHHHHHHcC----CCCHHHHHHHHH
Confidence 344677899999999999986632 1 17999997764 699999998774
No 39
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=91.26 E-value=0.27 Score=36.75 Aligned_cols=51 Identities=20% Similarity=0.415 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
....||..|.-.|++..... + .+|..|...-. .=-.|+...-++||.||+.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~--------------G-----~~W~~I~~~y~-f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTM--------------G-----NHWNSILWSFP-FQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHH--------------C-----SCHHHHHHHSC-CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHH--------------h-----HhHHHHHHhCC-CccCcccchHHHHHHHHHh
Confidence 45689999999999986532 1 18999985321 1127999999999999985
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=89.30 E-value=0.55 Score=43.36 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=37.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHH
Q 038571 35 TARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGN 104 (321)
Q Consensus 35 ~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~N 104 (321)
.....+||..|.+.|+++-+.. |+ .|..|+..+- .|+..||+.-|-|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kY------GK-------------DW~~IAk~Vg----TKT~~QcKnfY~~ 176 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKY------GR-------------DFQAISDVIG----NKSVVQVKNFFVN 176 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHH------SS-------------CHHHHHHHHS----SCCHHHHHHHHHH
T ss_pred CccCCCCCHHHHHHHHHHHHHH------Cc-------------CHHHHHHHcC----CCCHHHHHHHHHH
Confidence 3456799999999999986632 11 6999999874 6999999998853
No 41
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=83.07 E-value=1.9 Score=43.46 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=35.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHH
Q 038571 36 ARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRW 102 (321)
Q Consensus 36 ~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW 102 (321)
....+||..|++.|+++.+.. |+ -|..|+..+. .|+..||+.-+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y------Gk-------------dw~~IA~~Vg----TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY------GR-------------DFQAISDVIG----NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------TT-------------CHHHHHHHHS----SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH------Cc-------------CHHHHHHHhC----CCCHHHHHHHH
Confidence 457899999999999987632 11 6999999975 79999999754
No 42
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=80.36 E-value=19 Score=28.93 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 038571 28 NTDDRSKTARNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLV 107 (321)
Q Consensus 28 ~~~~~~r~~R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~ 107 (321)
+.+-.......--||+.|=.+++.+-++. | . ....|..|+..+. +|+++|-..|..-|+.
T Consensus 23 N~~~~s~Ge~VvlWTRe~DR~IL~~cQ~~------G------~----s~~tFa~iA~~L~----Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 23 NSKVSSTGEKVVLWTREADRVILTMCQEQ------G------A----QPHTFSVISQQLG----NKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCCCCCCCSSSCHHHHHHHHHHHHHT------T------S----CTTTHHHHHHHHS----SCCHHHHHHHHHHHHH
T ss_pred cceecCCCCEEEEeccccCHHHHHHHHhc------C------C----ChhHHHHHHHHHc----cCCHHHHHHHHHHHHH
Confidence 34455667778899999998888876621 1 0 1248999999986 7999999999999999
Q ss_pred HHHHH
Q 038571 108 DFRKI 112 (321)
Q Consensus 108 dYKkV 112 (321)
=|.+-
T Consensus 83 Lf~~~ 87 (95)
T 1ug2_A 83 LFHTA 87 (95)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88763
No 43
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=79.51 E-value=3.4 Score=32.96 Aligned_cols=56 Identities=14% Similarity=0.274 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHHH
Q 038571 39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGV-NRRPVQCRKRWGNLLVDFRKIK 113 (321)
Q Consensus 39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv-~Rs~~QCr~KW~NLl~dYKkVr 113 (321)
+.||..||--|++.-+.-+ .+|-.|+++..-.+. .||..+-+.++-.++....+.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fd-------------------lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD-------------------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-------------------TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC-------------------CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7999999999998755322 389999999865543 6999999999999988777665
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=52.34 E-value=26 Score=27.87 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=43.8
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHh-CCCCChHHHHHHHHHHHHHHHHHH
Q 038571 39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQY-GVNRRPVQCRKRWGNLLVDFRKIK 113 (321)
Q Consensus 39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~-Gv~Rs~~QCr~KW~NLl~dYKkVr 113 (321)
+.||..||--|...-+.-+ .+|-.|.++-.-. ...|+..+-+.++=.++...-+++
T Consensus 31 ~~WT~eETd~LfdLc~~fd-------------------lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-------------------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-------------------TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC-------------------CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 6899999999998765332 3899999986433 347999999999988888766665
No 45
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=51.45 E-value=14 Score=26.66 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHH-HHHHhCCCCChHHHHHHHHH
Q 038571 39 PRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVAS-YCKQYGVNRRPVQCRKRWGN 104 (321)
Q Consensus 39 p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~-~c~~~Gv~Rs~~QCr~KW~N 104 (321)
-.+|..|=.+|+...++.... ++ ...+ ...|+.+++ .+ -.|+..+||++|-+
T Consensus 3 ~~FT~edD~~L~~~v~~~~~~--~~----~~~G----n~iwk~la~~~~----~~HtwqSwRdRy~k 55 (59)
T 1fex_A 3 IAFTDADDVAILTYVKENARS--PS----SVTG----NALWKAMEKSSL----TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCHHHHHHHHHHHHHTCCS--TT----TTTS----SHHHHHHHHSCS----SSCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccc--cC----CCcc----HHHHHHHHHhHC----CCCCHHHHHHHHHH
Confidence 368999999999987754321 11 1222 359999988 33 37999999999976
No 46
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=39.81 E-value=43 Score=23.59 Aligned_cols=31 Identities=39% Similarity=0.395 Sum_probs=24.2
Q ss_pred HHHHHHhhhhhHHHHHHHH--------hhhhhhhhHHHH
Q 038571 266 LLFKVLERNSSMLNTQLEA--------QNINCQLDREQK 296 (321)
Q Consensus 266 ~lievLern~~ml~aQLEA--------Qn~n~qlDReqr 296 (321)
-+++-..-|++||+--||+ |.+-.||-||++
T Consensus 3 t~LK~~Q~NNr~LalALe~Ek~Kvr~Aq~~ILqLkrE~q 41 (47)
T 3fga_D 3 TLLKNYQDNNKMLVLALENEKSKVKEAQDIILQLRKECY 41 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677899999998876 677778888876
No 47
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=37.52 E-value=3.3 Score=31.93 Aligned_cols=45 Identities=24% Similarity=0.508 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHH
Q 038571 38 NPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKR 101 (321)
Q Consensus 38 ~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~K 101 (321)
...||..|-..|-++.+..... . .++|+.|++.+- .|++.+|+..
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~------------t---pdRWekIA~~Vp----GKT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKD------------T---PDRWKKVAQYVK----GRTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSS------------C---CSSSTTTGGGSC----SSCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCC------------C---CcHHHHHHHHcC----CCCHHHHHHH
Confidence 5679999999998887643211 1 259999998764 3999999864
No 48
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=27.97 E-value=33 Score=21.73 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.9
Q ss_pred HHHHHhhhHHHHHHHHH
Q 038571 294 EQKKEHSDNLIAAMNKL 310 (321)
Q Consensus 294 eqrkdq~~~LiavL~kL 310 (321)
-|.|...|+|+..|+++
T Consensus 9 tQIK~kvDsLLe~Le~~ 25 (28)
T 1txp_A 9 TQIKQKVDSLLENLEKI 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 47999999999999875
No 49
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=27.59 E-value=7 Score=27.71 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.1
Q ss_pred hcCCCCCchHHHHHHHH
Q 038571 136 QMKLPGYFDREVYDVLD 152 (321)
Q Consensus 136 e~~LP~~Fd~EVydaLd 152 (321)
-..||.+.|.|||.+|=
T Consensus 9 ~~~lP~~VD~eVF~~LP 25 (48)
T 2kwv_A 9 LQALPEGVDQEVFKQLP 25 (48)
T ss_dssp TTSSCTTCCGGGTTTSC
T ss_pred cccCCCCCCHHHHHHCc
Confidence 35899999999997763
No 50
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=27.58 E-value=1.8e+02 Score=21.12 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=21.0
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhc
Q 038571 296 KKEHSDNLIAAMNKLTDALLRIGNK 320 (321)
Q Consensus 296 rkdq~~~LiavL~kLadAl~rIADK 320 (321)
=+.....++.+|+.|+..|.++|++
T Consensus 61 ~~~~~~~~~~~L~~i~~~L~~~a~~ 85 (99)
T 3zbh_A 61 LRPSFEKMAVLLNEVGQQLHNSATI 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678999999999999999986
No 51
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=32.82 E-value=13 Score=28.24 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhhhhhcccccccccccCCCCcchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHH
Q 038571 37 RNPRWTRQETIVLIQGKRVVEDRIRGFRTSTSAFRSDHSEPKWDSVASYCKQYGVNRRPVQCRKRWGNLLVDFRKIK 113 (321)
Q Consensus 37 R~p~WT~~EtLvLI~akre~e~r~~~~r~~~~~~~s~~~~~kW~~Vs~~c~~~Gv~Rs~~QCr~KW~NLl~dYKkVr 113 (321)
..--||+.|=.+++.+-++ + | +....|..||..+ +|+++|-..+..-|+.=|++-+
T Consensus 13 ~vvlWTReeDR~IL~~cq~---~---G----------~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQK---R---G----------PSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3456888887766654331 1 1 1124899999877 4999999999999999988754
No 52
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=23.61 E-value=2.1e+02 Score=20.62 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=19.9
Q ss_pred HhhhHHHHHHHHHHHHHHHhhhcC
Q 038571 298 EHSDNLIAAMNKLTDALLRIGNKL 321 (321)
Q Consensus 298 dq~~~LiavL~kLadAl~rIADKL 321 (321)
.....++..|+.++..|.+||+++
T Consensus 63 ~~~~~~~~~L~~i~~~L~~~A~~~ 86 (93)
T 4ioe_A 63 QAMQQYIPILEGISTDLKRIADKF 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999863
No 53
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=23.17 E-value=2.2e+02 Score=20.80 Aligned_cols=26 Identities=8% Similarity=0.289 Sum_probs=21.5
Q ss_pred HHHhhhHHHHHHHHHHHHHHHhhhcC
Q 038571 296 KKEHSDNLIAAMNKLTDALLRIGNKL 321 (321)
Q Consensus 296 rkdq~~~LiavL~kLadAl~rIADKL 321 (321)
=+.....++.+|+.++..|.+||+++
T Consensus 60 ~~~~~~~~~~~L~~i~~~L~~~a~~~ 85 (98)
T 3gwk_C 60 LSPKITEFAQLLEDINQQLLKVADII 85 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999863
No 54
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.93 E-value=57 Score=21.74 Aligned_cols=21 Identities=10% Similarity=0.365 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 038571 100 KRWGNLLVDFRKIKRWESQMK 120 (321)
Q Consensus 100 ~KW~NLl~dYKkVr~wEr~~~ 120 (321)
+-|++.+..+|.||++.++.+
T Consensus 10 ~~f~~FY~rlk~Ike~Hrr~P 30 (38)
T 2dt7_A 10 NEFAEFYNRLKQIKEFHRKHP 30 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHHHHHhCC
Confidence 359999999999999999864
Done!