Query 038576
Match_columns 411
No_of_seqs 180 out of 2324
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 12:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.4E-24 3E-29 231.1 18.1 57 325-385 475-531 (968)
2 PLN00113 leucine-rich repeat r 99.9 3.4E-24 7.4E-29 228.0 18.3 343 5-385 203-579 (968)
3 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.5E-27 217.2 20.6 315 6-370 580-910 (1153)
4 PLN03210 Resistant to P. syrin 99.9 1.3E-22 2.8E-27 216.9 20.8 315 3-368 601-945 (1153)
5 KOG4194 Membrane glycoprotein 99.9 5.9E-24 1.3E-28 197.6 3.1 339 10-385 98-447 (873)
6 KOG4194 Membrane glycoprotein 99.8 3.6E-22 7.8E-27 185.8 3.8 334 16-387 80-426 (873)
7 KOG0444 Cytoskeletal regulator 99.8 5.5E-22 1.2E-26 186.1 -6.2 324 2-387 43-372 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 1.3E-20 2.8E-25 176.9 -3.5 155 4-172 93-252 (1255)
9 KOG0472 Leucine-rich repeat pr 99.8 3E-21 6.5E-26 172.4 -8.9 353 6-388 60-539 (565)
10 KOG0618 Serine/threonine phosp 99.7 6.3E-20 1.4E-24 179.4 -3.8 260 121-410 242-510 (1081)
11 KOG0472 Leucine-rich repeat pr 99.6 1.3E-17 2.8E-22 149.3 -4.0 166 3-172 126-304 (565)
12 KOG0618 Serine/threonine phosp 99.6 8.2E-17 1.8E-21 157.8 -1.4 340 11-391 42-464 (1081)
13 PRK15387 E3 ubiquitin-protein 99.6 2.1E-14 4.5E-19 144.4 14.9 252 14-385 201-453 (788)
14 KOG4658 Apoptotic ATPase [Sign 99.5 5.6E-15 1.2E-19 151.4 5.5 127 236-371 714-847 (889)
15 KOG4658 Apoptotic ATPase [Sign 99.5 7.6E-15 1.6E-19 150.5 5.5 298 13-372 544-866 (889)
16 PRK15387 E3 ubiquitin-protein 99.5 1.4E-13 3E-18 138.5 13.5 244 2-336 212-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.5 3.5E-13 7.6E-18 136.3 12.8 117 14-155 178-295 (754)
18 PRK15370 E3 ubiquitin-protein 99.5 2E-13 4.2E-18 138.1 9.6 128 2-156 189-317 (754)
19 KOG0617 Ras suppressor protein 99.4 3.5E-15 7.5E-20 119.0 -5.9 136 10-158 29-165 (264)
20 KOG0617 Ras suppressor protein 99.4 5.6E-15 1.2E-19 117.8 -5.1 141 2-156 44-186 (264)
21 KOG4237 Extracellular matrix p 99.3 1.7E-14 3.6E-19 129.3 -5.3 138 3-154 58-199 (498)
22 KOG4341 F-box protein containi 99.3 1.8E-14 4E-19 130.0 -6.3 309 14-384 138-459 (483)
23 cd00116 LRR_RI Leucine-rich re 99.2 3E-12 6.5E-17 119.2 0.8 38 262-300 220-261 (319)
24 cd00116 LRR_RI Leucine-rich re 99.2 5.3E-12 1.1E-16 117.6 0.7 77 19-97 3-94 (319)
25 PF14580 LRR_9: Leucine-rich r 99.1 2.7E-11 5.9E-16 100.5 3.2 128 10-150 15-147 (175)
26 KOG4237 Extracellular matrix p 99.1 6.9E-12 1.5E-16 112.8 -3.5 117 2-131 78-199 (498)
27 KOG4341 F-box protein containi 99.0 1.6E-11 3.5E-16 111.3 -4.3 285 36-391 138-439 (483)
28 PF14580 LRR_9: Leucine-rich r 98.8 4.6E-09 9.9E-14 87.3 4.3 110 9-128 36-148 (175)
29 KOG3207 Beta-tubulin folding c 98.8 2.3E-09 5E-14 98.0 2.1 108 11-130 118-232 (505)
30 KOG0532 Leucine-rich repeat (L 98.8 8.3E-10 1.8E-14 104.0 -1.1 137 3-156 110-247 (722)
31 KOG2120 SCF ubiquitin ligase, 98.7 2.7E-10 5.9E-15 99.1 -5.2 85 36-131 185-271 (419)
32 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.5E-13 69.7 3.6 59 36-95 1-60 (61)
33 COG4886 Leucine-rich repeat (L 98.6 1.8E-08 4E-13 96.7 3.2 145 11-159 113-271 (394)
34 KOG0532 Leucine-rich repeat (L 98.6 9.9E-10 2.2E-14 103.5 -5.4 135 3-154 87-222 (722)
35 PLN03150 hypothetical protein; 98.6 1.6E-07 3.5E-12 94.8 8.5 82 16-98 420-504 (623)
36 COG4886 Leucine-rich repeat (L 98.5 7E-08 1.5E-12 92.6 4.6 194 18-278 97-292 (394)
37 KOG2120 SCF ubiquitin ligase, 98.5 2.2E-09 4.8E-14 93.5 -5.5 59 85-154 186-245 (419)
38 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.4E-12 64.8 3.5 56 14-69 1-59 (61)
39 KOG1259 Nischarin, modulator o 98.5 2.3E-08 4.9E-13 87.4 -0.9 135 10-161 280-417 (490)
40 KOG3207 Beta-tubulin folding c 98.4 2.5E-08 5.5E-13 91.3 -1.5 134 9-154 141-282 (505)
41 KOG1259 Nischarin, modulator o 98.4 7.9E-08 1.7E-12 84.1 1.5 58 114-172 301-359 (490)
42 PLN03150 hypothetical protein; 98.4 8.6E-07 1.9E-11 89.6 7.3 91 5-96 433-527 (623)
43 PF12799 LRR_4: Leucine Rich r 98.2 1.7E-06 3.7E-11 54.1 4.2 40 36-76 1-40 (44)
44 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3E-12 90.9 -1.6 128 12-156 70-199 (414)
45 KOG1909 Ran GTPase-activating 98.1 6.5E-07 1.4E-11 80.1 1.0 248 9-300 25-309 (382)
46 PF12799 LRR_4: Leucine Rich r 98.1 4.4E-06 9.5E-11 52.3 3.9 40 14-53 1-41 (44)
47 PRK15386 type III secretion pr 98.1 1.7E-05 3.7E-10 74.2 8.9 133 207-385 51-185 (426)
48 KOG3665 ZYG-1-like serine/thre 98.1 2E-06 4.4E-11 86.9 2.9 125 14-152 122-259 (699)
49 PRK15386 type III secretion pr 97.9 3.3E-05 7.3E-10 72.4 8.4 119 236-391 49-169 (426)
50 KOG0531 Protein phosphatase 1, 97.9 3.5E-06 7.6E-11 81.3 0.6 108 10-135 91-201 (414)
51 KOG2982 Uncharacterized conser 97.9 9.5E-06 2.1E-10 71.3 2.9 101 17-130 48-156 (418)
52 KOG1859 Leucine-rich repeat pr 97.7 6.6E-07 1.4E-11 87.2 -7.2 111 8-133 181-292 (1096)
53 KOG1859 Leucine-rich repeat pr 97.7 2E-06 4.3E-11 84.0 -4.1 90 70-174 174-263 (1096)
54 KOG1947 Leucine rich repeat pr 97.7 4.6E-06 9.9E-11 82.2 -1.7 36 58-93 187-223 (482)
55 KOG1947 Leucine rich repeat pr 97.7 6E-06 1.3E-10 81.4 -1.3 42 290-341 402-443 (482)
56 KOG3665 ZYG-1-like serine/thre 97.6 3.7E-05 7.9E-10 78.0 3.2 112 12-131 146-261 (699)
57 KOG2982 Uncharacterized conser 97.6 2.4E-05 5.1E-10 68.9 1.5 94 263-370 173-266 (418)
58 KOG2739 Leucine-rich acidic nu 97.5 3.9E-05 8.4E-10 66.4 1.8 82 12-96 41-128 (260)
59 KOG4579 Leucine-rich repeat (L 97.5 7.8E-06 1.7E-10 63.6 -2.9 62 33-96 50-112 (177)
60 KOG1644 U2-associated snRNP A' 97.5 0.00026 5.7E-09 59.0 5.7 103 36-151 42-148 (233)
61 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.2E-09 59.2 5.0 105 15-129 43-149 (233)
62 KOG4579 Leucine-rich repeat (L 97.3 2.3E-05 5E-10 61.0 -2.3 103 35-151 26-131 (177)
63 KOG2123 Uncharacterized conser 97.1 1.5E-05 3.4E-10 69.3 -5.0 83 12-96 17-100 (388)
64 KOG1909 Ran GTPase-activating 97.0 0.00026 5.7E-09 63.7 1.3 155 9-175 53-251 (382)
65 KOG2123 Uncharacterized conser 96.8 6.2E-05 1.3E-09 65.7 -4.3 100 35-149 18-123 (388)
66 PF13306 LRR_5: Leucine rich r 96.8 0.0044 9.6E-08 48.9 6.5 104 8-129 6-112 (129)
67 COG5238 RNA1 Ran GTPase-activa 96.6 0.001 2.2E-08 58.1 1.9 141 9-154 25-196 (388)
68 PF00560 LRR_1: Leucine Rich R 96.6 0.001 2.2E-08 34.6 1.1 21 37-57 1-21 (22)
69 KOG2739 Leucine-rich acidic nu 96.3 0.0018 3.9E-08 56.3 1.5 110 32-154 39-154 (260)
70 KOG3864 Uncharacterized conser 95.7 0.0014 3E-08 54.8 -1.8 69 236-305 122-192 (221)
71 KOG3864 Uncharacterized conser 95.3 0.0025 5.4E-08 53.3 -1.6 34 59-92 151-184 (221)
72 PF13504 LRR_7: Leucine rich r 95.1 0.015 3.3E-07 27.9 1.4 15 37-51 2-16 (17)
73 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.7E-07 30.4 0.7 21 15-35 1-22 (22)
74 KOG0473 Leucine-rich repeat pr 93.6 0.0026 5.7E-08 54.3 -5.1 87 9-97 37-124 (326)
75 PF13306 LRR_5: Leucine rich r 93.4 0.26 5.5E-06 38.7 6.1 103 30-150 6-110 (129)
76 COG5238 RNA1 Ran GTPase-activa 92.2 0.099 2.1E-06 46.1 2.3 156 8-175 52-252 (388)
77 smart00369 LRR_TYP Leucine-ric 90.3 0.21 4.6E-06 26.8 1.7 18 36-53 2-19 (26)
78 smart00370 LRR Leucine-rich re 90.3 0.21 4.6E-06 26.8 1.7 18 36-53 2-19 (26)
79 smart00369 LRR_TYP Leucine-ric 88.5 0.4 8.6E-06 25.7 1.9 22 58-80 1-22 (26)
80 smart00370 LRR Leucine-rich re 88.5 0.4 8.6E-06 25.7 1.9 22 58-80 1-22 (26)
81 smart00367 LRR_CC Leucine-rich 87.9 0.36 7.8E-06 26.0 1.4 16 325-340 2-17 (26)
82 PF13516 LRR_6: Leucine Rich r 80.2 0.79 1.7E-05 24.0 0.6 14 36-49 2-15 (24)
83 KOG0473 Leucine-rich repeat pr 68.3 0.18 3.8E-06 43.5 -5.8 62 9-70 60-122 (326)
84 smart00364 LRR_BAC Leucine-ric 63.2 3.9 8.5E-05 22.0 0.8 15 38-52 4-18 (26)
85 smart00365 LRR_SD22 Leucine-ri 62.9 5.6 0.00012 21.4 1.4 12 37-48 3-14 (26)
86 smart00368 LRR_RI Leucine rich 58.9 6.7 0.00014 21.4 1.3 13 15-27 3-15 (28)
87 KOG3763 mRNA export factor TAP 47.1 4.8 0.0001 39.5 -0.8 65 236-300 215-281 (585)
88 KOG3763 mRNA export factor TAP 39.8 17 0.00038 35.7 1.7 62 34-97 216-283 (585)
89 KOG4308 LRR-containing protein 36.8 1.3 2.8E-05 43.5 -6.5 131 15-154 145-301 (478)
90 KOG4308 LRR-containing protein 23.2 4.5 9.7E-05 39.8 -5.4 118 6-133 164-303 (478)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.4e-24 Score=231.06 Aligned_cols=57 Identities=19% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576 325 SELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 325 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~ 385 (411)
++|+.|+++++.....+|. .. ..+++|+.|++++|.-...+|..+..+++|++|+++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~---~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 531 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPR---KL-GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLS 531 (968)
T ss_pred ccceEEECcCCccCCccCh---hh-hhhhccCEEECcCCcceeeCChHHcCccCCCEEECC
Confidence 4556666665532222211 11 235777778887765555677666677888888886
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=3.4e-24 Score=228.02 Aligned_cols=343 Identities=19% Similarity=0.150 Sum_probs=204.3
Q ss_pred CCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576 5 ALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 5 ~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
.+|..++++.+|++|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. +.
T Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~ 281 (968)
T PLN00113 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IF 281 (968)
T ss_pred cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-Hh
Confidence 468888999999999999998775 788889999999999999887 67888999999999999986444556665 78
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC-CcCCcccccCCCCcEEEEEecCCc-ccc
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE-KTLPRDLSFFKMLQRYRILIGDSR-EYD 159 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~i~~~~~~-~~~ 159 (411)
.+++|++|++++|.+.. ..+..+.++++|+.|++++|.. ..+|..+..+++|+.|.+..+... ..|
T Consensus 282 ~l~~L~~L~Ls~n~l~~------------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 282 SLQKLISLDLSDNSLSG------------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred hccCcCEEECcCCeecc------------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 88999999998888765 3335666677777777776663 345555666777777777655433 223
Q ss_pred CcC-CccceeEEEecCCcccccccccccccccchhcccCCCc-----cccccccchhhhchHhhhcccccccc-------
Q 038576 160 AWD-GISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDS-----EALYTSFKNVENGMEAMMRGINHRRE------- 226 (411)
Q Consensus 160 ~~~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~L~~L~~~~~~~l~~~~~------- 226 (411)
.+. ...+++.|++..+.........+..+..+..+....+. ...+..+++|+.| .+.++.-
T Consensus 350 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L------~L~~n~l~~~~p~~ 423 (968)
T PLN00113 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV------RLQDNSFSGELPSE 423 (968)
T ss_pred hHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE------ECcCCEeeeECChh
Confidence 222 24555555554432211111111111111111110000 0012234444444 4444331
Q ss_pred ----------------ccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhcccc
Q 038576 227 ----------------LKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVR 290 (411)
Q Consensus 227 ----------------l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 290 (411)
+..........+++|+.|++++|......+.... .++|+.|++++|...... + ..+..+++
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~-~-~~~~~l~~ 500 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAV-P-RKLGSLSE 500 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCcc-C-hhhhhhhc
Confidence 1211111223455666666665543333332222 456666666666443332 2 13456677
Q ss_pred ccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcccc
Q 038576 291 LRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFS 370 (411)
Q Consensus 291 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p 370 (411)
|+.|++++|.-...++.. +..+++|+.|+++++.-...+|..- ..+++|++|++++|.-...+|
T Consensus 501 L~~L~Ls~N~l~~~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDE------------LSSCKKLVSLDLSHNQLSGQIPASF----SEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred cCEEECcCCcceeeCChH------------HcCccCCCEEECCCCcccccCChhH----hCcccCCEEECCCCcccccCC
Confidence 777777776533333332 2347888888888875333332111 235888888888876655788
Q ss_pred CCCCCCCCceEEEEe
Q 038576 371 EGELSTPKLQKVQMS 385 (411)
Q Consensus 371 ~~~~~~~~L~~l~l~ 385 (411)
..+..+++|+.++++
T Consensus 565 ~~l~~l~~L~~l~ls 579 (968)
T PLN00113 565 KNLGNVESLVQVNIS 579 (968)
T ss_pred hhHhcCcccCEEecc
Confidence 777778888888886
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.2e-22 Score=217.23 Aligned_cols=315 Identities=22% Similarity=0.256 Sum_probs=165.9
Q ss_pred CChhhhcc-ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCC
Q 038576 6 LPSSLGLL-QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSL 83 (411)
Q Consensus 6 lp~~l~~l-~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L 83 (411)
+|..+..+ .+||.|++.++.++. |..+ ...+|+.|+++++.+..+|..+..+++|++|++++|+.++.+|. ++.+
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l 656 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMA 656 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccC
Confidence 34444443 346666666665555 5444 35677777777777777777777777777777777666777764 6677
Q ss_pred CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCc-cccCc
Q 038576 84 SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSR-EYDAW 161 (411)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~-~~~~~ 161 (411)
++|++|++++|.... ..+..+.++++|+.|++++|. ...+|..+ .+++|+.|.+..+... .+|+.
T Consensus 657 ~~Le~L~L~~c~~L~------------~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 657 TNLETLKLSDCSSLV------------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CcccEEEecCCCCcc------------ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc
Confidence 777777777776444 334667777777777777764 55566554 5677777777654321 22221
Q ss_pred CCccceeEEEecCCcccccccccccccccchhcccC----------CCccc--cccccchhhhchHhhhccccccccccc
Q 038576 162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSG----------GDSEA--LYTSFKNVENGMEAMMRGINHRRELKQ 229 (411)
Q Consensus 162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~--~~~~~~~L~~L~~~~~~~l~~~~~l~~ 229 (411)
..++..|++.++....+... ..++.+..+... ..... ....+++|++| .+.+++.+..
T Consensus 724 --~~nL~~L~L~~n~i~~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L------~Ls~n~~l~~ 793 (1153)
T PLN03210 724 --STNISWLDLDETAIEEFPSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL------FLSDIPSLVE 793 (1153)
T ss_pred --cCCcCeeecCCCcccccccc--ccccccccccccccchhhccccccccchhhhhccccchhe------eCCCCCCccc
Confidence 33455555443221111100 001111111000 00000 01122455555 5555544444
Q ss_pred cccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccccccc
Q 038576 230 IFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADE 309 (411)
Q Consensus 230 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 309 (411)
++.. ...+++|+.|++++|..+..++.... +++|+.|++++|..++.++. ..++|+.|+++++. +++++..
T Consensus 794 lP~s-i~~L~~L~~L~Ls~C~~L~~LP~~~~-L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n~-i~~iP~s- 864 (1153)
T PLN03210 794 LPSS-IQNLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRTG-IEEVPWW- 864 (1153)
T ss_pred cChh-hhCCCCCCEEECCCCCCcCeeCCCCC-ccccCEEECCCCCccccccc-----cccccCEeECCCCC-CccChHH-
Confidence 4332 34455555555555555544433332 55555555555555544321 12455555555532 4444332
Q ss_pred CCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcccc
Q 038576 310 DDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFS 370 (411)
Q Consensus 310 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p 370 (411)
...+++|+.|++++|++++.+|.... .+++|+.+++++|.++..++
T Consensus 865 -----------i~~l~~L~~L~L~~C~~L~~l~~~~~----~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 865 -----------IEKFSNLSFLDMNGCNNLQRVSLNIS----KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -----------HhcCCCCCEEECCCCCCcCccCcccc----cccCCCeeecCCCccccccc
Confidence 22366677777777776666643322 24666666777776666543
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.3e-22 Score=216.94 Aligned_cols=315 Identities=20% Similarity=0.274 Sum_probs=208.1
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCC-ccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGS-DMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
++.+|..+ ...+|+.|++.++.+.. +..+..+++|++|+++++ .+..+|. ++.+++|++|++++|..+..+|.. +
T Consensus 601 l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i 677 (1153)
T PLN03210 601 LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-I 677 (1153)
T ss_pred CCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-h
Confidence 45666665 45778888888877777 677777778888888776 4556663 677778888888877777777766 7
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCcccc
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSREYD 159 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~~~~ 159 (411)
+.+++|++|++++|.... .+| ..+ ++++|+.|++++|. ...+|. ...+|+.|.+..+....+|
T Consensus 678 ~~L~~L~~L~L~~c~~L~-~Lp-----------~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLE-ILP-----------TGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFP 741 (1153)
T ss_pred hccCCCCEEeCCCCCCcC-ccC-----------CcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccc
Confidence 777888888887775443 222 222 56677777777765 333332 2356667776655555555
Q ss_pred CcCCccceeEEEecCCccc------------------ccccccccccccchhcccCCCccccccccchhhhchHhhhccc
Q 038576 160 AWDGISRISKLKLTNGANI------------------CLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGI 221 (411)
Q Consensus 160 ~~~~~~~l~~L~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l 221 (411)
......++..|.+..+... .++...+.++..+..+ ...++++++|+.| .+
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l------P~si~~L~~L~~L------~L 809 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL------PSSIQNLHKLEHL------EI 809 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc------ChhhhCCCCCCEE------EC
Confidence 4433444444444321110 0111111111111111 1134578999999 99
Q ss_pred cccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccc
Q 038576 222 NHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVM 301 (411)
Q Consensus 222 ~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 301 (411)
.+|..++.++... .+++|++|++++|..+..++.. .++|+.|+++++ .++.++. .+..+++|+.|++.+|++
T Consensus 810 s~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 810 ENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred CCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCC
Confidence 9999888877643 7899999999999888765543 578999999886 5666643 468899999999999999
Q ss_pred ccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCc---------ccccCCCcceEeecCCCCCcc
Q 038576 302 ITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNN---------CAFKFPSLERLVVNRCPNMKI 368 (411)
Q Consensus 302 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---------~~~~~~~L~~L~i~~C~~l~~ 368 (411)
++.++.... .+++|+.+++++|++++.++..... ....+|+...+.+.+|.++..
T Consensus 882 L~~l~~~~~------------~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 882 LQRVSLNIS------------KLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred cCccCcccc------------cccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 998876443 4899999999999999877332210 001245556667788877764
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=5.9e-24 Score=197.61 Aligned_cols=339 Identities=18% Similarity=0.232 Sum_probs=232.8
Q ss_pred hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
|.++.+|+.+++..|.++. |...+...+|+.|+|.+|.|..+. ..+..++.||.|||+. +.+..+|...+.+=.+++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIK 176 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCce
Confidence 4455555555555555555 333333344555555555555443 2355566666666666 566666655455566677
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc-ccCCCCcEEEEEecCCcc--ccCcCCc
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRILIGDSRE--YDAWDGI 164 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~~~~--~~~~~~~ 164 (411)
+|++++|.|+. .....|..+.+|.+|.++.|++..+|... ..+++|+.|++..+.... +-.|.++
T Consensus 177 ~L~La~N~It~------------l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 177 KLNLASNRITT------------LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred EEeeccccccc------------cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 77777776654 33467777888899999999988888754 458999999887665432 3445557
Q ss_pred cceeEEEecCCcccccccccccccccchhcccCCCcc-----ccccccchhhhchHhhhccccccccccccccccccCCC
Q 038576 165 SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSE-----ALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAK 239 (411)
Q Consensus 165 ~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~ 239 (411)
.+++.|.+..+....+.+|.+-++.+++.++-+.+.. ..+.++..|+.| +++.+. ++.+......-++
T Consensus 245 ~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L------~lS~Na-I~rih~d~Wsftq 317 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL------DLSYNA-IQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh------ccchhh-hheeecchhhhcc
Confidence 7888888888777888899888888888887554433 256678899999 988865 6666665666789
Q ss_pred CCcEEEecCCcCCccCCCC-CCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccC
Q 038576 240 DLEKLSIFMCDNLTHLVPS-STSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAA 318 (411)
Q Consensus 240 ~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 318 (411)
+|+.|++++ +.+..+.+. ...+..|+.|.++++. +..+ ....+..+.+|+.|++.++. +...+++...
T Consensus 318 kL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l-~e~af~~lssL~~LdLr~N~-ls~~IEDaa~------- 386 (873)
T KOG4194|consen 318 KLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNS-IDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIEDAAV------- 386 (873)
T ss_pred cceeEeccc-cccccCChhHHHHHHHhhhhcccccc-hHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEecchh-------
Confidence 999999997 555444432 2336788999998764 5554 33456788999999999865 5555444333
Q ss_pred ccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576 319 QDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 319 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~ 385 (411)
.+.++++|+.|.+.+ +++++++ ..++ .++++||.|++.+ +.+.++....+..-.|++|.++
T Consensus 387 -~f~gl~~LrkL~l~g-Nqlk~I~--krAf-sgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 387 -AFNGLPSLRKLRLTG-NQLKSIP--KRAF-SGLEALEHLDLGD-NAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred -hhccchhhhheeecC-ceeeecc--hhhh-ccCcccceecCCC-Ccceeecccccccchhhhhhhc
Confidence 566799999999999 5799983 4444 6789999999998 4577665544444499999883
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.6e-22 Score=185.83 Aligned_cols=334 Identities=15% Similarity=0.190 Sum_probs=201.5
Q ss_pred CcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 16 LQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 16 L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
.+.|++++|.+.+ +..|.++++|+.+.+..|.++.+|...+...+|+.|+|.+ +.+.++....++.++.|+.||++.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhh
Confidence 4557777777666 5566677777777777777777776666666677777777 566666655566777777777777
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCC--ccceeEE
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDG--ISRISKL 170 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~--~~~l~~L 170 (411)
|.+.. ++ ...+..-.++++|++++|+++.+-. .+..+.+|-.|.+..+.....|-..+ +.+++.|
T Consensus 159 N~is~--i~----------~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 159 NLISE--IP----------KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred chhhc--cc----------CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 76653 22 2445555567777777776555433 34555666667776666665554433 5555555
Q ss_pred EecCCcccccccccccccccchhcccCCC---c--cccccccchhhhchHhhhccccccccccccccccccCCCCCcEEE
Q 038576 171 KLTNGANICLNEGHIMQLKRIEDLTSGGD---S--EALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLS 245 (411)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~--~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~ 245 (411)
++..+..--.+-..+++++.++.+.-+-+ . ...+..+.++++| ++..+. ++.+.....-.++.|+.|+
T Consensus 227 dLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l------~L~~N~-l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 227 DLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL------NLETNR-LQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee------ecccch-hhhhhcccccccchhhhhc
Confidence 55332222223335555555554432111 1 1134455666666 665544 4444443445667777777
Q ss_pred ecCCcCCccC-CCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccccc
Q 038576 246 IFMCDNLTHL-VPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVF 324 (411)
Q Consensus 246 l~~c~~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (411)
+++ +.+... +..+...++|+.|+++++ .++.+++ ..+..+.+|+.|.++++. +..+-.. .+..+
T Consensus 300 lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e~-----------af~~l 364 (873)
T KOG4194|consen 300 LSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSHNS-IDHLAEG-----------AFVGL 364 (873)
T ss_pred cch-hhhheeecchhhhcccceeEecccc-ccccCCh-hHHHHHHHhhhhcccccc-hHHHHhh-----------HHHHh
Confidence 776 333221 122233677888888665 4555533 345667788888887754 5544321 45578
Q ss_pred CCCCeeecCCCcCCceeccCCCccc-ccCCCcceEeecCCCCCccccCC-CCCCCCceEEEEecc
Q 038576 325 SELKELNLSNLQSLTSFSCSGNNCA-FKFPSLERLVVNRCPNMKIFSEG-ELSTPKLQKVQMSLV 387 (411)
Q Consensus 325 ~~L~~L~l~~c~~l~~~~~~~~~~~-~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~l~~~ 387 (411)
.+|++|++++- .+... ....+.+ .++|+|++|++.+ ++++.+|.. +..++.|++|++.+|
T Consensus 365 ssL~~LdLr~N-~ls~~-IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 365 SSLHKLDLRSN-ELSWC-IEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhhhhcCcCC-eEEEE-EecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 99999999984 45444 2222211 2579999999999 789999864 447899999999544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=5.5e-22 Score=186.08 Aligned_cols=324 Identities=18% Similarity=0.261 Sum_probs=200.8
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.+..+|+.++.|.+|+.|+++.|++.. -..+..++.||.++++.|++. .+|..|.++..|..|+||+ +.++++|.+
T Consensus 43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~ 121 (1255)
T KOG0444|consen 43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTN 121 (1255)
T ss_pred hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch-hhhhhcchh
Confidence 356788888888888888888888777 666778888888888888776 7888899999999999999 789999987
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREY 158 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~ 158 (411)
+..-.++-.|++++|+|.. ||. .-+.++..|-.|+++.|+...+|+.+..+.+|++|.++.+....+
T Consensus 122 -LE~AKn~iVLNLS~N~Iet--IPn----------~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 122 -LEYAKNSIVLNLSYNNIET--IPN----------SLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred -hhhhcCcEEEEcccCcccc--CCc----------hHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH
Confidence 8888899999999998863 443 566788888899999999999999988899999998875543322
Q ss_pred cCc--CCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576 159 DAW--DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS 236 (411)
Q Consensus 159 ~~~--~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~ 236 (411)
.-- ..+.++..|+++.... .+.++ .+++..+.+|..+ +++.+. +..++. ..-
T Consensus 189 QLrQLPsmtsL~vLhms~TqR------------Tl~N~------Ptsld~l~NL~dv------DlS~N~-Lp~vPe-cly 242 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQR------------TLDNI------PTSLDDLHNLRDV------DLSENN-LPIVPE-CLY 242 (1255)
T ss_pred HHhcCccchhhhhhhcccccc------------hhhcC------CCchhhhhhhhhc------cccccC-CCcchH-HHh
Confidence 100 0011111111111000 00000 0112233444444 444322 222221 112
Q ss_pred CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc-cccccccccCCCCCC
Q 038576 237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV-MITEIVADEDDEGDN 315 (411)
Q Consensus 237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~-~l~~~~~~~~~~~~~ 315 (411)
.+++|..|++++ +.++.+.-....+.+|+.|.++.+ +++.+|. .+-.++.|+.|.+.++. ..+.++.
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrN-QLt~LP~--avcKL~kL~kLy~n~NkL~FeGiPS-------- 310 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRN-QLTVLPD--AVCKLTKLTKLYANNNKLTFEGIPS-------- 310 (1255)
T ss_pred hhhhhheeccCc-CceeeeeccHHHHhhhhhhccccc-hhccchH--HHhhhHHHHHHHhccCcccccCCcc--------
Confidence 445555555554 233322222222555555555544 3333321 23445555555554433 1122222
Q ss_pred ccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576 316 YAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV 387 (411)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~ 387 (411)
++..+..|+.+...+ ++++-+ ++.. ..|++|++|.+. |+.+-++|+++..+|-|+.|++..|
T Consensus 311 ----GIGKL~~Levf~aan-N~LElV---PEgl-cRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 311 ----GIGKLIQLEVFHAAN-NKLELV---PEGL-CRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred ----chhhhhhhHHHHhhc-cccccC---chhh-hhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCC
Confidence 334456666666665 344444 2222 568999999884 5889999999999999999999744
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=1.3e-20 Score=176.91 Aligned_cols=155 Identities=22% Similarity=0.342 Sum_probs=123.0
Q ss_pred CCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccccc
Q 038576 4 LALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 4 ~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
.-+|..+-++..|.+|+|+.|.++. |..+...+++-+|+|+.|+|..+|.. +-+++.|-+|+||+ +.+..+|+. +.
T Consensus 93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ-~R 170 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQ-IR 170 (1255)
T ss_pred CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHH-HH
Confidence 3468888888899999999999888 88888888999999999999988876 45888899999998 788888887 88
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc--CCcCCcccccCCCCcEEEEEecCCcccc
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD--EKTLPRDLSFFKMLQRYRILIGDSREYD 159 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~l~~~~~L~~L~i~~~~~~~~~ 159 (411)
+|.+|+.|++++|++.. .++..+..+++|+.|++++.. ...+|..+..+.+|..++++.++....|
T Consensus 171 RL~~LqtL~Ls~NPL~h------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNH------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred HHhhhhhhhcCCChhhH------------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 89999999999988766 566777778888888888765 6778888888888888888766666555
Q ss_pred CcCC-ccceeEEEe
Q 038576 160 AWDG-ISRISKLKL 172 (411)
Q Consensus 160 ~~~~-~~~l~~L~~ 172 (411)
+... ..+++.|++
T Consensus 239 ecly~l~~LrrLNL 252 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNL 252 (1255)
T ss_pred HHHhhhhhhheecc
Confidence 5433 334444444
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.76 E-value=3e-21 Score=172.36 Aligned_cols=353 Identities=19% Similarity=0.189 Sum_probs=203.3
Q ss_pred CChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCC
Q 038576 6 LPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLS 84 (411)
Q Consensus 6 lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~ 84 (411)
+-+.+.++..|.+|++.+|.+.+ |+.++.+..++.|+.+++++..+|..++.+.+|+.|+.++ +.+.++|++ ++.+-
T Consensus 60 l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~-i~~~~ 137 (565)
T KOG0472|consen 60 LREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDS-IGRLL 137 (565)
T ss_pred ccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCch-HHHHh
Confidence 33445555566666666666555 6666666666666666666666666666666666666666 455555555 55565
Q ss_pred CccEEEecccccccCcccccccc------------ccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEe
Q 038576 85 RLEELYIGQSPIQWGKVEGVDGE------------RRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 152 (411)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~ 152 (411)
.|+.++..+|++.. +|+.... ...+.++..-+++.|++++...|..+.+|+.++.+.+|..|.+..
T Consensus 138 ~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 138 DLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 66655555555542 2221110 111344555557888888888888889999999999999999988
Q ss_pred cCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccc----cccccchhhhchHhhhcccccccccc
Q 038576 153 GDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEA----LYTSFKNVENGMEAMMRGINHRRELK 228 (411)
Q Consensus 153 ~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~~~~~~~l~~~~~l~ 228 (411)
+.....|++.+++.+.+++...+..-.++..+..++..+..++-.-+... -.-.+.+|+.| +++++. +.
T Consensus 216 Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL------DlSNN~-is 288 (565)
T KOG0472|consen 216 NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL------DLSNND-IS 288 (565)
T ss_pred cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh------cccCCc-cc
Confidence 88888898888888888877554333344444444444443332211111 11234566667 666654 44
Q ss_pred ccccccccCCCCCcEEEecCCcCC-------------------c-----cCCC-----------CCC------CCCCcCe
Q 038576 229 QIFKQESSNAKDLEKLSIFMCDNL-------------------T-----HLVP-----------SST------SFQNLTT 267 (411)
Q Consensus 229 ~~~~~~~~~~~~L~~L~l~~c~~l-------------------~-----~~~~-----------~~~------~~~~L~~ 267 (411)
.++. ..+++ +|+.|.+.+.+-- + ++.. ... ...+.|.
T Consensus 289 ~Lp~-sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 289 SLPY-SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred cCCc-ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 4433 22344 5555555543211 0 0000 000 1113344
Q ss_pred EeecCCCCCccccc------------------------------------------------hHhhhccccccEEeEccc
Q 038576 268 LTVWGCHGMINVLT------------------------------------------------SSTARSLVRLRQMTIKVC 299 (411)
Q Consensus 268 L~l~~c~~l~~~~~------------------------------------------------~~~~~~l~~L~~L~l~~c 299 (411)
|++++ ..++++|. ...+..+++|..|+++++
T Consensus 367 L~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 367 LDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred hcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 44332 12222221 112455677777777775
Q ss_pred ccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccC---------------------CCcccccCCCcceE
Q 038576 300 VMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCS---------------------GNNCAFKFPSLERL 358 (411)
Q Consensus 300 ~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~---------------------~~~~~~~~~~L~~L 358 (411)
. +.+++.+.+. +-.|+.|+++.- ..+.+|.. ...+ .+..+|.+|
T Consensus 446 ~-Ln~LP~e~~~------------lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l-~nm~nL~tL 510 (565)
T KOG0472|consen 446 L-LNDLPEEMGS------------LVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGL-KNMRNLTTL 510 (565)
T ss_pred h-hhhcchhhhh------------hhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHh-hhhhhccee
Confidence 5 6777665544 666777777753 33332210 0111 345788889
Q ss_pred eecCCCCCccccCCCCCCCCceEEEEeccc
Q 038576 359 VVNRCPNMKIFSEGELSTPKLQKVQMSLVD 388 (411)
Q Consensus 359 ~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c 388 (411)
++.+ +.+..+|..++.+.+|++|++.+|-
T Consensus 511 DL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 511 DLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccCC-CchhhCChhhccccceeEEEecCCc
Confidence 8887 6788899988999999999997553
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.74 E-value=6.3e-20 Score=179.36 Aligned_cols=260 Identities=15% Similarity=0.167 Sum_probs=153.8
Q ss_pred CCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCC-ccceeEEEecCCcccccccccccccccchhcccCCC
Q 038576 121 KLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDG-ISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGD 199 (411)
Q Consensus 121 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (411)
+|++++++.+....+|.++..+.+|+.+.+..+.....+.-.. ..+++.|....+. +..-.....+...+..++-.-+
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc
Confidence 7889999999988899888889999988877665543332111 2222222211100 0000001111111111111100
Q ss_pred ccc-----ccccc-chhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCC
Q 038576 200 SEA-----LYTSF-KNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGC 273 (411)
Q Consensus 200 ~~~-----~~~~~-~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c 273 (411)
... .+... ..|..| +.+... +...+..+...++.|+.|.+.+..-.+...|....+++||.|+++++
T Consensus 321 ~L~~lp~~~l~v~~~~l~~l------n~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTL------NVSSNK-LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred cccccchHHHhhhhHHHHHH------hhhhcc-ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 000 00001 123444 333332 34444444467788999999884444555565556999999999887
Q ss_pred CCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCC
Q 038576 274 HGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFP 353 (411)
Q Consensus 274 ~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 353 (411)
. +..+ +.+.+.+++.|+.|+++++. ++.++.... .+++|++|...+ +.+..+| .. ...+
T Consensus 394 r-L~~f-pas~~~kle~LeeL~LSGNk-L~~Lp~tva------------~~~~L~tL~ahs-N~l~~fP-e~----~~l~ 452 (1081)
T KOG0618|consen 394 R-LNSF-PASKLRKLEELEELNLSGNK-LTTLPDTVA------------NLGRLHTLRAHS-NQLLSFP-EL----AQLP 452 (1081)
T ss_pred c-cccC-CHHHHhchHHhHHHhcccch-hhhhhHHHH------------hhhhhHHHhhcC-Cceeech-hh----hhcC
Confidence 3 5554 66788999999999999976 888886543 489999998887 4577764 11 2358
Q ss_pred CcceEeecCCCCCccccCCCCCC-CCceEEEEeccccc-hhcccCCchhhHHHHHHhhc
Q 038576 354 SLERLVVNRCPNMKIFSEGELST-PKLQKVQMSLVDEK-LWAWDRDLNTTIQYVYLKIK 410 (411)
Q Consensus 354 ~L~~L~i~~C~~l~~~p~~~~~~-~~L~~l~l~~~c~~-l~~~~~~~~~~l~~l~i~~~ 410 (411)
.|+.++++ |+++..+-.....+ |+|++|++++|-.. +.+..++.+..+....++.+
T Consensus 453 qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 453 QLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cceEEecc-cchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999995 47787533222224 89999999877632 24444555555555555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=1.3e-17 Score=149.35 Aligned_cols=166 Identities=24% Similarity=0.370 Sum_probs=96.8
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
+..+|++++++..|..++..+|.++. |+++.++..|..|++.+++++.+|+..-+++.|++|+... +-++.+|.+ ++
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg 203 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LG 203 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hc
Confidence 34456666666666666666666555 5555555555555555555555544433355555555544 344555544 45
Q ss_pred CCCCccEEEecccccccCcccccccc-----------ccccchhh-ccCCCCCCEEEEeeccCCcCCcccccCCCCcEEE
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGE-----------RRNASLDE-LNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYR 149 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~-----------~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~ 149 (411)
.+.+|+.|++..|.+.. +|..-+- .....+.+ .+++.++..|++..|...++|.++..+++|.+|+
T Consensus 204 ~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLD 281 (565)
T ss_pred chhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhc
Confidence 55555555554444331 2211100 00022334 4488999999999999999999999999999999
Q ss_pred EEecCCccccCcCCccceeEEEe
Q 038576 150 ILIGDSREYDAWDGISRISKLKL 172 (411)
Q Consensus 150 i~~~~~~~~~~~~~~~~l~~L~~ 172 (411)
++.+.....|--.+--.+..|.+
T Consensus 282 lSNN~is~Lp~sLgnlhL~~L~l 304 (565)
T KOG0472|consen 282 LSNNDISSLPYSLGNLHLKFLAL 304 (565)
T ss_pred ccCCccccCCcccccceeeehhh
Confidence 99877665554433224444443
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=8.2e-17 Score=157.84 Aligned_cols=340 Identities=19% Similarity=0.183 Sum_probs=193.7
Q ss_pred hccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 11 GLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
.++.+|+.|++++|.+.. |..+..+.+|+.|.++.|.+...|.+++++.+|++|.|.+ +....+|.+ +..+.+|++|
T Consensus 42 ~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~-~~~lknl~~L 119 (1081)
T KOG0618|consen 42 EKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPAS-ISELKNLQYL 119 (1081)
T ss_pred hheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchh-HHhhhccccc
Confidence 344456666666666666 6666666666666666666666666666666666666665 566666665 6666666666
Q ss_pred EecccccccCccccccccc--------------------------------cccchhhccCCCCCCEEEEeeccCCcCCc
Q 038576 90 YIGQSPIQWGKVEGVDGER--------------------------------RNASLDELNNLSKLTSLEILIQDEKTLPR 137 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 137 (411)
++++|.+.. +|.+.... ....+.++.++.. .+++..|.+.. .
T Consensus 120 dlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~ 193 (1081)
T KOG0618|consen 120 DLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--L 193 (1081)
T ss_pred ccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--h
Confidence 666665432 22222110 0111222222222 36666655431 1
Q ss_pred ccccC--------------------CCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccC
Q 038576 138 DLSFF--------------------KMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSG 197 (411)
Q Consensus 138 ~l~~~--------------------~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~ 197 (411)
.+..+ ++++.|....+..........+..++.++++++.-..+. .++..|..+..+...
T Consensus 194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNAN 272 (1081)
T ss_pred hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEeccc
Confidence 11112 233333333333332222233566666666654444444 556666666655543
Q ss_pred CCccc----cccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCC---------------
Q 038576 198 GDSEA----LYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPS--------------- 258 (411)
Q Consensus 198 ~~~~~----~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--------------- 258 (411)
.+... -....++|+.| .+..+. +.+++... ..++.|++|++.. +++..++..
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l------~~~~ne-l~yip~~l-e~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSL------SAAYNE-LEYIPPFL-EGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVS 343 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHH------Hhhhhh-hhhCCCcc-cccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhh
Confidence 33221 12344566666 555543 55555422 4567777777765 333222221
Q ss_pred -----------CCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576 259 -----------STSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL 327 (411)
Q Consensus 259 -----------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 327 (411)
...++.|+.|.+.++.--.+.+ ..+.++..|+.|+++++. +.+++.. ....++.|
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyNr-L~~fpas-----------~~~kle~L 409 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYNR-LNSFPAS-----------KLRKLEEL 409 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccch--hhhccccceeeeeecccc-cccCCHH-----------HHhchHHh
Confidence 1124455666665554333322 246789999999999965 7777654 33468899
Q ss_pred CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEeccccch
Q 038576 328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKL 391 (411)
Q Consensus 328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c~~l 391 (411)
++|.+++ ++|+.+|-.. ..++.|++|...+ +.+..+|+ +..+|.|+.++++ |+++
T Consensus 410 eeL~LSG-NkL~~Lp~tv----a~~~~L~tL~ahs-N~l~~fPe-~~~l~qL~~lDlS--~N~L 464 (1081)
T KOG0618|consen 410 EELNLSG-NKLTTLPDTV----ANLGRLHTLRAHS-NQLLSFPE-LAQLPQLKVLDLS--CNNL 464 (1081)
T ss_pred HHHhccc-chhhhhhHHH----HhhhhhHHHhhcC-Cceeechh-hhhcCcceEEecc--cchh
Confidence 9999999 5799884221 3478999998877 67889994 7789999999994 6666
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=2.1e-14 Score=144.39 Aligned_cols=252 Identities=20% Similarity=0.169 Sum_probs=155.7
Q ss_pred ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
..-..|+++++.++. |+.+. .+|+.|++.+|+++.+|.. .++|++|++++ +.++.+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~-N~LtsLP~l----p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSG-NQLTSLPVL----PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecC-CccCcccCc----ccccceeecc
Confidence 456678899888888 77665 4789999999988888753 57889999988 578888752 4688888888
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL 172 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~ 172 (411)
+|.+.. ++ . -..+|+.|++++|....+|.. .++|+.|+++.+....+|..
T Consensus 271 ~N~L~~--Lp-----------~---lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l----------- 320 (788)
T PRK15387 271 SNPLTH--LP-----------A---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL----------- 320 (788)
T ss_pred CCchhh--hh-----------h---chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC-----------
Confidence 887642 21 1 124677888888887777753 46788888775544422221
Q ss_pred cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCC
Q 038576 173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l 252 (411)
..+|+.| .+.++. ++.++. ..++|+.|++++ +.+
T Consensus 321 ----------------------------------p~~L~~L------~Ls~N~-L~~LP~----lp~~Lq~LdLS~-N~L 354 (788)
T PRK15387 321 ----------------------------------PSELCKL------WAYNNQ-LTSLPT----LPSGLQELSVSD-NQL 354 (788)
T ss_pred ----------------------------------ccccccc------ccccCc-cccccc----cccccceEecCC-Ccc
Confidence 1234455 554433 333322 224667777766 444
Q ss_pred ccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeec
Q 038576 253 THLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNL 332 (411)
Q Consensus 253 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 332 (411)
..++.. .++|+.|+++++ .++.++. ..++|+.|+++++. ++.++. ..++|+.|++
T Consensus 355 s~LP~l---p~~L~~L~Ls~N-~L~~LP~-----l~~~L~~LdLs~N~-Lt~LP~---------------l~s~L~~LdL 409 (788)
T PRK15387 355 ASLPTL---PSELYKLWAYNN-RLTSLPA-----LPSGLKELIVSGNR-LTSLPV---------------LPSELKELMV 409 (788)
T ss_pred CCCCCC---Ccccceehhhcc-ccccCcc-----cccccceEEecCCc-ccCCCC---------------cccCCCEEEc
Confidence 444332 456666666554 3444432 13467777776654 444432 1356777777
Q ss_pred CCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576 333 SNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 333 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~ 385 (411)
+++ .++++|.. +.+|+.|++.+ +.+..+|..+..+++|+.|+++
T Consensus 410 S~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 410 SGN-RLTSLPML-------PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLE 453 (788)
T ss_pred cCC-cCCCCCcc-------hhhhhhhhhcc-CcccccChHHhhccCCCeEECC
Confidence 774 45555321 24566677766 4566777666666777777775
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.53 E-value=5.6e-15 Score=151.42 Aligned_cols=127 Identities=21% Similarity=0.346 Sum_probs=81.4
Q ss_pred cCCCCCcEEEecCCcCCccCCCC-----CC-CCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccccccc
Q 038576 236 SNAKDLEKLSIFMCDNLTHLVPS-----ST-SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADE 309 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~~l~~~~~~-----~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 309 (411)
..+++|++|.|.+|...+..... .. .|+++..+.+.+|...++.. +....|+|+.|.+.+|..++++....
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccCCCHH
Confidence 57788888888888765322110 11 16677777888888877753 34567888888888888887776654
Q ss_pred CCCCCCccCccccccCCCCee-ecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccC
Q 038576 310 DDEGDNYAAQDEIVFSELKEL-NLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSE 371 (411)
Q Consensus 310 ~~~~~~~~~~~~~~~~~L~~L-~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~ 371 (411)
... .........|.++..+ .+.+.+.+..+-+.+. .++.|+.+.+..||+++.+|.
T Consensus 791 k~~--~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l----~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 791 KAL--LELKELILPFNKLEGLRMLCSLGGLPQLYWLPL----SFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred HHh--hhcccEEecccccccceeeecCCCCceeEeccc----CccchhheehhcCcccccCcc
Confidence 330 1111124456666666 4666666666622232 247788999999888887765
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.52 E-value=7.6e-15 Score=150.49 Aligned_cols=298 Identities=22% Similarity=0.272 Sum_probs=172.0
Q ss_pred cccCcEEEecCCc--CCC--CccccccccCcEEEeeCC-ccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 13 LQNLQTLSLDDCE--LGD--MAIIGDLKKLVILALRGS-DMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 13 l~~L~~L~l~~~~--l~~--~~~l~~l~~L~~L~L~~~-~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
+..|+.|-+.++. +.. ...|..++.|++||+++| .+..+|..|+++.+||||++++ +.+.++|.+ +++|..|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~-l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSG-LGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchH-HHHHHhhh
Confidence 4467777777775 444 233667778888888876 5667787788888888888877 677777777 77778888
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC---CcCCcccccCCCCcEEEEEecCCccccCcCCc
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE---KTLPRDLSFFKMLQRYRILIGDSREYDAWDGI 164 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~ 164 (411)
+|++..+.... ..+.....+.+|++|.+..... ......+..+.+|+.+.+...+.....+..+.
T Consensus 622 ~Lnl~~~~~l~------------~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~ 689 (889)
T KOG4658|consen 622 YLNLEVTGRLE------------SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGM 689 (889)
T ss_pred eeccccccccc------------cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhh
Confidence 88777665432 2235555577777777765431 11122233445555555443322101111111
Q ss_pred cceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccc---ccc-ccC-CC
Q 038576 165 SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIF---KQE-SSN-AK 239 (411)
Q Consensus 165 ~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~---~~~-~~~-~~ 239 (411)
.++..+... ..+.+ .... ........+.+|+.| .+.+|...+... ... ... |+
T Consensus 690 ~~L~~~~~~---------l~~~~-~~~~------~~~~~~~~l~~L~~L------~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 690 TRLRSLLQS---------LSIEG-CSKR------TLISSLGSLGNLEEL------SILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred HHHHHHhHh---------hhhcc-cccc------eeecccccccCcceE------EEEcCCCchhhcccccccchhhhHH
Confidence 111111100 00000 0000 011123356788888 888877543211 111 122 67
Q ss_pred CCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEe-----------Ecccccccccccc
Q 038576 240 DLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMT-----------IKVCVMITEIVAD 308 (411)
Q Consensus 240 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~-----------l~~c~~l~~~~~~ 308 (411)
++.++.+.+|.......+... .|+|+.|.+..|..++++.+ ....+..++.+. +.+...+.++..
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~f-~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~- 823 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLLF-APHLTSLSLVSCRLLEDIIP--KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW- 823 (889)
T ss_pred HHHHHHhhccccccccchhhc-cCcccEEEEecccccccCCC--HHHHhhhcccEEecccccccceeeecCCCCceeEe-
Confidence 788888888877776665544 78999999999988887533 334444444322 222222222222
Q ss_pred cCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCC-CCCccccCC
Q 038576 309 EDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRC-PNMKIFSEG 372 (411)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C-~~l~~~p~~ 372 (411)
....+++|+.+.+..||++... |.+.++.+.+| +.+..+|..
T Consensus 824 -----------~~l~~~~l~~~~ve~~p~l~~~-----------P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 824 -----------LPLSFLKLEELIVEECPKLGKL-----------PLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred -----------cccCccchhheehhcCcccccC-----------ccccccceeccccceeecCCc
Confidence 2223666888888888877776 78888888887 777777764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.4e-13 Score=138.51 Aligned_cols=244 Identities=19% Similarity=0.135 Sum_probs=159.2
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
.++.+|..+.. +|+.|++++|.++. |.. .++|++|++++|.++.+|.. .++|+.|++++ +.+..+|..
T Consensus 212 ~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~-N~L~~Lp~l-- 280 (788)
T PRK15387 212 GLTTLPDCLPA--HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFS-NPLTHLPAL-- 280 (788)
T ss_pred CCCcCCcchhc--CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccC-Cchhhhhhc--
Confidence 46788988764 89999999999998 542 47999999999999988853 46899999999 578888752
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA 160 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~ 160 (411)
..+|+.|++++|.+.. +| . .+++|+.|++++|.+..+|.. ..+|+.|.+..+....+|.
T Consensus 281 --p~~L~~L~Ls~N~Lt~--LP-----------~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~ 339 (788)
T PRK15387 281 --PSGLCKLWIFGNQLTS--LP-----------V---LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPT 339 (788)
T ss_pred --hhhcCEEECcCCcccc--cc-----------c---cccccceeECCCCccccCCCC---cccccccccccCccccccc
Confidence 3678899999998753 22 2 246799999999988887753 3467778777666555554
Q ss_pred cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCC
Q 038576 161 WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKD 240 (411)
Q Consensus 161 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~ 240 (411)
+ +.+++.|+++++.-. .++. ...+|+.| .+.++. +..++. .+++
T Consensus 340 l--p~~Lq~LdLS~N~Ls--------~LP~---------------lp~~L~~L------~Ls~N~-L~~LP~----l~~~ 383 (788)
T PRK15387 340 L--PSGLQELSVSDNQLA--------SLPT---------------LPSELYKL------WAYNNR-LTSLPA----LPSG 383 (788)
T ss_pred c--ccccceEecCCCccC--------CCCC---------------CCccccee------hhhccc-cccCcc----cccc
Confidence 2 345566665442111 1100 12345566 655533 444332 2356
Q ss_pred CcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcc
Q 038576 241 LEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQD 320 (411)
Q Consensus 241 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 320 (411)
|+.|+++++ .+..++.. .++|+.|++++|. ++.++. .+.+|+.|+++++. ++.++...
T Consensus 384 L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~-LssIP~-----l~~~L~~L~Ls~Nq-Lt~LP~sl----------- 441 (788)
T PRK15387 384 LKELIVSGN-RLTSLPVL---PSELKELMVSGNR-LTSLPM-----LPSGLLSLSVYRNQ-LTRLPESL----------- 441 (788)
T ss_pred cceEEecCC-cccCCCCc---ccCCCEEEccCCc-CCCCCc-----chhhhhhhhhccCc-ccccChHH-----------
Confidence 777777763 44443332 4577777777764 444432 13466777777654 55555432
Q ss_pred ccccCCCCeeecCCCc
Q 038576 321 EIVFSELKELNLSNLQ 336 (411)
Q Consensus 321 ~~~~~~L~~L~l~~c~ 336 (411)
..+++|+.|++++.+
T Consensus 442 -~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 -IHLSSETTVNLEGNP 456 (788)
T ss_pred -hhccCCCeEECCCCC
Confidence 236777777777754
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.47 E-value=3.5e-13 Score=136.30 Aligned_cols=117 Identities=21% Similarity=0.309 Sum_probs=86.6
Q ss_pred ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
.+...|++++++++. |..+. .+|+.|++++|+++.+|..+. .+|++|++++ +.++.+|.. + ..+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~-l--~~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANS-NQLTSIPAT-L--PDTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCC-CccccCChh-h--hccccEEECc
Confidence 456788998888888 66554 478999999998888887664 5899999998 578888865 3 3478999999
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCC
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDS 155 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~ 155 (411)
+|.+.. +| ..+. .+|+.|++++|.+..+|..+. .+|+.|+++.+..
T Consensus 250 ~N~L~~--LP-----------~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 250 INRITE--LP-----------ERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred CCccCc--CC-----------hhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCcc
Confidence 887752 33 3332 478889998888877877653 5788888765443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2e-13 Score=138.12 Aligned_cols=128 Identities=18% Similarity=0.296 Sum_probs=99.0
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
+++.+|..+. .+|+.|++++|.++. |..+. .+|++|++++|.++.+|..+. .+|+.|++++ +.+..+|.. +
T Consensus 189 ~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~-N~L~~LP~~-l 260 (754)
T PRK15370 189 GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI-NRITELPER-L 260 (754)
T ss_pred CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC-CccCcCChh-H
Confidence 5678887765 489999999999998 76554 599999999999999987664 4799999999 578889876 4
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 156 (411)
. .+|+.|++++|.+.. +| ..+. .+|+.|++++|.+..+|..+. .+|+.|++..+...
T Consensus 261 ~--s~L~~L~Ls~N~L~~--LP-----------~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 261 P--SALQSLDLFHNKISC--LP-----------ENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred h--CCCCEEECcCCccCc--cc-----------cccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccc
Confidence 3 589999999988753 33 3332 479999999999888876542 46777777644433
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=3.5e-15 Score=118.98 Aligned_cols=136 Identities=26% Similarity=0.325 Sum_probs=103.1
Q ss_pred hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
+-++.+...|-++.|+++. |+.+..+.+|+.|++.+|.++++|..++.+++|+.|+++- +.+..+|.+ ++.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprg-fgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRG-FGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccc-cCCCchhhh
Confidence 3456778888899999888 8888999999999999999999999999999999999887 788888888 899999999
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccc
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREY 158 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~ 158 (411)
||+.+|......+ ++.+-.+..|+.|.++.|.+..+|+.++.+++||.|.+..++..+.
T Consensus 107 ldltynnl~e~~l-----------pgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 107 LDLTYNNLNENSL-----------PGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred hhccccccccccC-----------CcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC
Confidence 9998887754233 3555555666666666666666666666666666666655544433
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=5.6e-15 Score=117.78 Aligned_cols=141 Identities=23% Similarity=0.359 Sum_probs=122.7
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCc-cccCccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFEL-KVIPPNV 79 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~-~~~~~~~ 79 (411)
+++.+|..+..+.+|+.|++++|++++ |.+++.+++|+.|++.-|++..+|..++.++.|+.||+.+++-- ..+|..
T Consensus 44 Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgn- 122 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGN- 122 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcc-
Confidence 466789999999999999999999999 99999999999999999999999999999999999999994332 234655
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 156 (411)
+-.++.|+-|+++.|.+. -.+.+++++++|+-|.+..|...++|..++.+..|+.|+|..+...
T Consensus 123 ff~m~tlralyl~dndfe-------------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFE-------------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhHHHHHHHHHhcCCCcc-------------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 678889999999988764 3558999999999999999999999999999999999999855544
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=1.7e-14 Score=129.32 Aligned_cols=138 Identities=17% Similarity=0.259 Sum_probs=112.8
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNV 79 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~ 79 (411)
++.+|..+.. .-..++|..|+|+. +..|+.+++||.|||+.|.|+.| |.+|..+++|-.|-+-++++++++|.++
T Consensus 58 L~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 4556655432 45678999999999 57899999999999999999966 6779999999988888779999999999
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecC
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGD 154 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~ 154 (411)
+++|.+|+.|.+..|.+.- .....+..+++|..|.+..|.+..++. .+..+..++.+++..+.
T Consensus 136 F~gL~slqrLllNan~i~C------------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINC------------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhHHHHHHHhcChhhhcc------------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 9999999999999887653 344788899999999999998887777 56677777777765433
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.33 E-value=1.8e-14 Score=130.02 Aligned_cols=309 Identities=18% Similarity=0.210 Sum_probs=184.7
Q ss_pred ccCcEEEecCCc-CCC--Cc-cccccccCcEEEeeCC-ccc--cchHHhcCCCCCCEEecCCCCCccccCcc-cccCCCC
Q 038576 14 QNLQTLSLDDCE-LGD--MA-IIGDLKKLVILALRGS-DME--ELAGEIGQLTQLRLLNLSKCFELKVIPPN-VISSLSR 85 (411)
Q Consensus 14 ~~L~~L~l~~~~-l~~--~~-~l~~l~~L~~L~L~~~-~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~-~l~~L~~ 85 (411)
..||.|+++|+. ... .. ...++++++.|++.+| +++ .+-..-..+.+|++|++..|..+++.... ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357777888876 333 22 2346778888888887 555 23333346788888888888777766432 3446788
Q ss_pred ccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCcc
Q 038576 86 LEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGIS 165 (411)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~ 165 (411)
|+++++++|.... + +.+..-...+..++.+...+|.....-. +.. ..++ ..
T Consensus 218 L~~lNlSwc~qi~----~------~gv~~~~rG~~~l~~~~~kGC~e~~le~-l~~---------~~~~---------~~ 268 (483)
T KOG4341|consen 218 LKYLNLSWCPQIS----G------NGVQALQRGCKELEKLSLKGCLELELEA-LLK---------AAAY---------CL 268 (483)
T ss_pred HHHhhhccCchhh----c------CcchHHhccchhhhhhhhcccccccHHH-HHH---------Hhcc---------Ch
Confidence 8888888875322 0 0111222223334444333432111100 000 0000 00
Q ss_pred ceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccc-ccCCCCCcEE
Q 038576 166 RISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQE-SSNAKDLEKL 244 (411)
Q Consensus 166 ~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~-~~~~~~L~~L 244 (411)
.+..+++. .|..+.+.+... .-.++..|+.| ..++|..+++..... ....++|+.|
T Consensus 269 ~i~~lnl~-------------~c~~lTD~~~~~----i~~~c~~lq~l------~~s~~t~~~d~~l~aLg~~~~~L~~l 325 (483)
T KOG4341|consen 269 EILKLNLQ-------------HCNQLTDEDLWL----IACGCHALQVL------CYSSCTDITDEVLWALGQHCHNLQVL 325 (483)
T ss_pred Hhhccchh-------------hhccccchHHHH----HhhhhhHhhhh------cccCCCCCchHHHHHHhcCCCceEEE
Confidence 11111111 222222221100 11257889999 999998877644332 3577999999
Q ss_pred EecCCcCCc--cCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccc
Q 038576 245 SIFMCDNLT--HLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEI 322 (411)
Q Consensus 245 ~l~~c~~l~--~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 322 (411)
.++.|..++ ++......++.|+.+++..|..+.+--..+...+++.|+.|.+++|..+++... ..+....-
T Consensus 326 ~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi-------~~l~~~~c 398 (483)
T KOG4341|consen 326 ELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI-------RHLSSSSC 398 (483)
T ss_pred eccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh-------hhhhhccc
Confidence 999999873 445556679999999999998887753445567899999999999987665521 11111223
Q ss_pred ccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCC--CCCCCCceEEEE
Q 038576 323 VFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEG--ELSTPKLQKVQM 384 (411)
Q Consensus 323 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~--~~~~~~L~~l~l 384 (411)
....|..+.+++||.+.+- ..++. ..|++||.+++.+|..+..-+.. ..++|+++...+
T Consensus 399 ~~~~l~~lEL~n~p~i~d~--~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDA--TLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccceeeecCCCCchHH--HHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 4678999999999988775 33333 56899999999999988754321 225666655444
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.20 E-value=3e-12 Score=119.20 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=19.0
Q ss_pred CCCcCeEeecCCCCCccccchHhhhc----cccccEEeEcccc
Q 038576 262 FQNLTTLTVWGCHGMINVLTSSTARS----LVRLRQMTIKVCV 300 (411)
Q Consensus 262 ~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~ 300 (411)
+++|+.|++++|. +++......... .+.|++|++.+|.
T Consensus 220 ~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 220 LKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 5666666666653 332212122222 2566666666664
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.17 E-value=5.3e-12 Score=117.57 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=43.1
Q ss_pred EEecCCcCCC---CccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccc-------cCcccccCC
Q 038576 19 LSLDDCELGD---MAIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKV-------IPPNVISSL 83 (411)
Q Consensus 19 L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~-------~~~~~l~~L 83 (411)
|+|..+.+.. ...+..+.+|++|+++++.++ .++..+...++|++|+++++ .+.. ++.. +..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~-l~~~ 80 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQG-LTKG 80 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHH-HHhc
Confidence 4555555542 344455566777777777663 34455556666777777663 2221 1222 4556
Q ss_pred CCccEEEecccccc
Q 038576 84 SRLEELYIGQSPIQ 97 (411)
Q Consensus 84 ~~L~~L~l~~~~~~ 97 (411)
++|++|++++|.+.
T Consensus 81 ~~L~~L~l~~~~~~ 94 (319)
T cd00116 81 CGLQELDLSDNALG 94 (319)
T ss_pred CceeEEEccCCCCC
Confidence 67777777666553
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=2.7e-11 Score=100.53 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=54.3
Q ss_pred hhccccCcEEEecCCcCCCCcccc-ccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAIIG-DLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~l~-~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
+.+...++.|+|+|+.++..+.++ .+.+|+.|++++|.++.++ .+..+++|++|++++ +.+++++......+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 455667899999999999866776 5789999999999999885 578899999999999 7899987652346999999
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEE
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRI 150 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i 150 (411)
|++++|.+.. ......+..+++|+.|++.+|.....+. .+..+++|+.|+-
T Consensus 93 L~L~~N~I~~-----------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISD-----------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---S-----------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCC-----------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 9999998853 1345778889999999999998655443 3567889998864
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=6.9e-12 Score=112.77 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=99.3
Q ss_pred CCCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeC-CccccchHH-hcCCCCCCEEecCCCCCccccC
Q 038576 2 HLLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRG-SDMEELAGE-IGQLTQLRLLNLSKCFELKVIP 76 (411)
Q Consensus 2 ~l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~-~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~ 76 (411)
.|+.+|+ .|+.+++||+|||+.|.|+. |..|.++..|-.|-+.+ |+|+.+|.. |++|..|+.|.+.- +.+.-++
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchh
Confidence 3677885 49999999999999999988 89999999999998888 799999975 88999999999988 5777777
Q ss_pred cccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc
Q 038576 77 PNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD 131 (411)
Q Consensus 77 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 131 (411)
..++..+++|..|.+..|.+.. .....+..+..++++++..+.
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~------------i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQS------------ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHHHhhhcchhcccchhhhh------------hccccccchhccchHhhhcCc
Confidence 7779999999999999987753 223577888888888887665
No 27
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.98 E-value=1.6e-11 Score=111.26 Aligned_cols=285 Identities=18% Similarity=0.183 Sum_probs=181.7
Q ss_pred ccCcEEEeeCCccc---cchHHhcCCCCCCEEecCCCCCccccCc-ccccCCCCccEEEecccccccCcccccccccccc
Q 038576 36 KKLVILALRGSDME---ELAGEIGQLTQLRLLNLSKCFELKVIPP-NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNA 111 (411)
Q Consensus 36 ~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 111 (411)
-.|+.|.++|+.-. .+-....+++++++|++.+|.++++-.. .+-..++.|+++++..|.... + .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT----------~-~ 206 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT----------D-V 206 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH----------H-H
Confidence 46888899888322 4444556889999999999887776532 113468889999998865322 0 2
Q ss_pred chh-hccCCCCCCEEEEeeccCCc---CCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccc
Q 038576 112 SLD-ELNNLSKLTSLEILIQDEKT---LPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQ 187 (411)
Q Consensus 112 ~~~-~l~~l~~L~~L~l~~~~~~~---~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ 187 (411)
..+ --..+++|.+++++||.... +..-...+.+++.+... +|....
T Consensus 207 ~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k----------------------GC~e~~-------- 256 (483)
T KOG4341|consen 207 SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK----------------------GCLELE-------- 256 (483)
T ss_pred HHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc----------------------cccccc--------
Confidence 222 33467888888888876221 11111223333333222 111111
Q ss_pred cccchhcccCCCccccccccchhhhchHhhhccccccccccccccc-cccCCCCCcEEEecCCcCCccCC--CCCCCCCC
Q 038576 188 LKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ-ESSNAKDLEKLSIFMCDNLTHLV--PSSTSFQN 264 (411)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~-~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~ 264 (411)
++.+.... ..+..+.++ ++.+|..+++.... ....+..|+.|+.++|....+.. ....+.++
T Consensus 257 le~l~~~~---------~~~~~i~~l------nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 257 LEALLKAA---------AYCLEILKL------NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred HHHHHHHh---------ccChHhhcc------chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 01111110 134456666 77788777664422 12467889999999998874432 23345899
Q ss_pred cCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCcee---
Q 038576 265 LTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSF--- 341 (411)
Q Consensus 265 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~--- 341 (411)
|+.+.+.+|...++..-.....+.+.|+.+++.+|....+-.. ......+|.|+.|.++.|..+++-
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL----------~sls~~C~~lr~lslshce~itD~gi~ 391 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL----------ASLSRNCPRLRVLSLSHCELITDEGIR 391 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH----------hhhccCCchhccCChhhhhhhhhhhhh
Confidence 9999999999999887667778899999999999875444311 112346899999999999877764
Q ss_pred --ccCCCcccccCCCcceEeecCCCCCcccc-CCCCCCCCceEEEEeccccch
Q 038576 342 --SCSGNNCAFKFPSLERLVVNRCPNMKIFS-EGELSTPKLQKVQMSLVDEKL 391 (411)
Q Consensus 342 --~~~~~~~~~~~~~L~~L~i~~C~~l~~~p-~~~~~~~~L~~l~l~~~c~~l 391 (411)
.... .....|+.+.+.+|+.+.+-. +.....+.|+.+++. .|...
T Consensus 392 ~l~~~~----c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~-~~q~v 439 (483)
T KOG4341|consen 392 HLSSSS----CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELI-DCQDV 439 (483)
T ss_pred hhhhcc----ccccccceeeecCCCCchHHHHHHHhhCcccceeeee-chhhh
Confidence 1111 234789999999999887522 234568899998886 66655
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=4.6e-09 Score=87.27 Aligned_cols=110 Identities=25% Similarity=0.343 Sum_probs=54.8
Q ss_pred hhh-ccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHh-cCCCCCCEEecCCCCCccccCc-ccccCCCC
Q 038576 9 SLG-LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKCFELKVIPP-NVISSLSR 85 (411)
Q Consensus 9 ~l~-~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~ 85 (411)
.++ .+.+|+.|++++|.++..+.+..++.|++|++++|+++.+...+ ..+++|++|++++ +.+.++.. ..++.+++
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPK 114 (175)
T ss_dssp S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT
T ss_pred chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCC
Confidence 455 47899999999999999778999999999999999999886655 4699999999999 67776642 22778999
Q ss_pred ccEEEecccccccCccccccccccccchhhccCCCCCCEEEEe
Q 038576 86 LEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEIL 128 (411)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 128 (411)
|+.|++.+|++.. . + .--...+..+|+|+.||-.
T Consensus 115 L~~L~L~~NPv~~-~-~-------~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 115 LRVLSLEGNPVCE-K-K-------NYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TT-GGGG-S-T-------THHHHHHHH-TT-SEETTE
T ss_pred cceeeccCCcccc-h-h-------hHHHHHHHHcChhheeCCE
Confidence 9999999998754 1 1 1123455678888888754
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.3e-09 Score=97.98 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=70.5
Q ss_pred hccccCcEEEecCCcCCC-C--ccccccccCcEEEeeCCccc---cchHHhcCCCCCCEEecCCCCCccccCcc-cccCC
Q 038576 11 GLLQNLQTLSLDDCELGD-M--AIIGDLKKLVILALRGSDME---ELAGEIGQLTQLRLLNLSKCFELKVIPPN-VISSL 83 (411)
Q Consensus 11 ~~l~~L~~L~l~~~~l~~-~--~~l~~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~~~~~~~~~-~l~~L 83 (411)
+++..||...|.++.+.. + .....|++++.||+++|-+. .+-..+..+++|+.|+++. +.+...-.+ .-..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~-Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS-NRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc-ccccCCccccchhhh
Confidence 466778888888888766 3 36677888888888888555 3444566788888888888 444433221 12357
Q ss_pred CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeec
Q 038576 84 SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ 130 (411)
Q Consensus 84 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 130 (411)
++|+.|.++.|.+.+- .+..-+..+|+|..|.+..|
T Consensus 197 ~~lK~L~l~~CGls~k-----------~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWK-----------DVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhheEEeccCCCCHH-----------HHHHHHHhCCcHHHhhhhcc
Confidence 7888888888877660 11133345566666666665
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=8.3e-10 Score=104.02 Aligned_cols=137 Identities=25% Similarity=0.376 Sum_probs=112.6
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
+..+|..++++..|.+++|+.|.+.. |..++.+ -|+.|.+++|+++.+|..++.+.+|..|+.+. +.+..+|+. ++
T Consensus 110 ~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq-l~ 186 (722)
T KOG0532|consen 110 IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ-LG 186 (722)
T ss_pred ceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH-hh
Confidence 55678888888888888888888888 7777766 48888888888888888888888888888888 578888877 88
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 156 (411)
.+.+|+.|.+..|.+. ..+.++..| .|..||++.|+...+|-.+..|+.|+.|-+..+...
T Consensus 187 ~l~slr~l~vrRn~l~-------------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLE-------------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hHHHHHHHHHhhhhhh-------------hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 8888888888888765 355777755 489999999999999999999999999988755443
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.7e-10 Score=99.07 Aligned_cols=85 Identities=26% Similarity=0.190 Sum_probs=54.5
Q ss_pred ccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccch
Q 038576 36 KKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASL 113 (411)
Q Consensus 36 ~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 113 (411)
..|++|||+...|+ .+...+..|.+|+.|.+.+ ..+.+--...|++=.+|+.++++.|.-.. ..+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t----------~n~~~ 253 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFT----------ENALQ 253 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccc----------hhHHH
Confidence 35778888887776 5555667777778777777 34433222226677778888887775321 11333
Q ss_pred hhccCCCCCCEEEEeecc
Q 038576 114 DELNNLSKLTSLEILIQD 131 (411)
Q Consensus 114 ~~l~~l~~L~~L~l~~~~ 131 (411)
--+.++..|..|+++||.
T Consensus 254 ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 254 LLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHhhhhHhhcCchHhh
Confidence 456677778888888775
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.72 E-value=1.1e-08 Score=69.70 Aligned_cols=59 Identities=29% Similarity=0.447 Sum_probs=40.8
Q ss_pred ccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576 36 KKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP 95 (411)
Q Consensus 36 ~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~ 95 (411)
++|++|++++|+++.+|. .+..+++|++|++++ +.++.++.+++..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356777777777776664 466677777777776 56677766667777777777777765
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.62 E-value=1.8e-08 Score=96.66 Aligned_cols=145 Identities=27% Similarity=0.318 Sum_probs=68.6
Q ss_pred hccccCcEEEecCCcCCC-Cccccccc-cCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 11 GLLQNLQTLSLDDCELGD-MAIIGDLK-KLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
.+...++.|++.++.+.+ ++...... +|+.|+++++.+..+|..++.+++|+.|++++ +.+.++|.. .+.+++|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~-~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKL-LSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhh-hhhhhhhhh
Confidence 334455555555555555 44444442 55555555555555555555555555555555 455555543 235555555
Q ss_pred EEecccccccCcccccccc-----------c-cccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576 89 LYIGQSPIQWGKVEGVDGE-----------R-RNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~-----------~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 156 (411)
|+++++.+.. ++..... . ....+..+.++.++..+.+..+....++..++.+.+++.|++..+...
T Consensus 191 L~ls~N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 191 LDLSGNKISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eeccCCcccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc
Confidence 5555555431 1110000 0 002233444444444444444444444444455555555555544444
Q ss_pred ccc
Q 038576 157 EYD 159 (411)
Q Consensus 157 ~~~ 159 (411)
.++
T Consensus 269 ~i~ 271 (394)
T COG4886 269 SIS 271 (394)
T ss_pred ccc
Confidence 333
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=9.9e-10 Score=103.49 Aligned_cols=135 Identities=24% Similarity=0.328 Sum_probs=108.8
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
+..+|..+..|..|..+.+..|.+.. |..++++..|.+|+++.|.+..+|..+..|+ |+.|-+++ ++++.+|.. ++
T Consensus 87 ~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~-ig 163 (722)
T KOG0532|consen 87 FSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEE-IG 163 (722)
T ss_pred cccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcc-cc
Confidence 45678888888888888888888888 8888888888888888888888888888887 88888888 788888887 88
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 154 (411)
.+..|.+||.+.|.+. ..+..++.+.+|+.+.+..|....+|..+. .-.|.+|+++-+.
T Consensus 164 ~~~tl~~ld~s~nei~-------------slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQ-------------SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred cchhHHHhhhhhhhhh-------------hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCc
Confidence 8888888888888765 356888888888888888888888888876 4456777776333
No 35
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=1.6e-07 Score=94.83 Aligned_cols=82 Identities=24% Similarity=0.365 Sum_probs=41.8
Q ss_pred CcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 16 LQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 16 L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
++.|+|+++.+.. |..++++++|++|+|++|.+. .+|..++++++|+.|++++|.....+|.. ++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 4445555555443 445555555555555555554 45555555555555555553323344443 5555555555555
Q ss_pred cccccc
Q 038576 93 QSPIQW 98 (411)
Q Consensus 93 ~~~~~~ 98 (411)
+|.+.+
T Consensus 499 ~N~l~g 504 (623)
T PLN03150 499 GNSLSG 504 (623)
T ss_pred CCcccc
Confidence 555443
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=7e-08 Score=92.65 Aligned_cols=194 Identities=20% Similarity=0.313 Sum_probs=137.9
Q ss_pred EEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCC-CCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576 18 TLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLT-QLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP 95 (411)
Q Consensus 18 ~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~-~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~ 95 (411)
.++..++.+.. ...+..+..+..|++..+.++.+|...+.+. +|+.|++++ +.+..+|.. ++.+++|+.|+++.|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~-~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSP-LRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhh-hhccccccccccCCch
Confidence 57888887744 6667777899999999999999999888885 999999999 799999755 8999999999999999
Q ss_pred cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCC
Q 038576 96 IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNG 175 (411)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~ 175 (411)
+.. .+.....++.|+.++++++....+|..+.....|+++.+..+.....+.
T Consensus 175 l~~-------------l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--------------- 226 (394)
T COG4886 175 LSD-------------LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS--------------- 226 (394)
T ss_pred hhh-------------hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch---------------
Confidence 863 3344448899999999999999999877677779999887443111000
Q ss_pred cccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccC
Q 038576 176 ANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHL 255 (411)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 255 (411)
....+.++..+ .+.+.. +... ......+++++.|++++ +.+...
T Consensus 227 ---------------------------~~~~~~~l~~l------~l~~n~-~~~~-~~~~~~l~~l~~L~~s~-n~i~~i 270 (394)
T COG4886 227 ---------------------------SLSNLKNLSGL------ELSNNK-LEDL-PESIGNLSNLETLDLSN-NQISSI 270 (394)
T ss_pred ---------------------------hhhhccccccc------ccCCce-eeec-cchhccccccceecccc-cccccc
Confidence 01133444444 433332 2221 11234667788888887 344444
Q ss_pred CCCCCCCCCcCeEeecCCCCCcc
Q 038576 256 VPSSTSFQNLTTLTVWGCHGMIN 278 (411)
Q Consensus 256 ~~~~~~~~~L~~L~l~~c~~l~~ 278 (411)
..... +.+++.|+++++.....
T Consensus 271 ~~~~~-~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 271 SSLGS-LTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccc-cCccCEEeccCcccccc
Confidence 44333 78888888887765443
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.2e-09 Score=93.53 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=29.9
Q ss_pred CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecC
Q 038576 85 RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~ 154 (411)
.||++|++...++. .....-+..+.+|+.+.+.+.. .+.+...++.-.+|+.|+++.++
T Consensus 186 Rlq~lDLS~s~it~-----------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV-----------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeH-----------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 46666666655533 0122344455566666666555 33333445555556665555443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=1.1e-07 Score=64.77 Aligned_cols=56 Identities=27% Similarity=0.443 Sum_probs=50.8
Q ss_pred ccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCC
Q 038576 14 QNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKC 69 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c 69 (411)
++|++|++++|.++. +..|.++++|++|++++|.++.+++ .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 378999999999998 4789999999999999999998875 6899999999999995
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.46 E-value=2.3e-08 Score=87.44 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=107.0
Q ss_pred hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
+.-.+.|+.+|+++|.++. -.++.-.+.+|.|+++.|++..+-. +..+++|+.||+++ +.+..+... =.++-|.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gw-h~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSG-NLLAECVGW-HLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeeccc-chhHhhhhh-HhhhcCEee
Confidence 4445678899999999888 6777778999999999999887754 88899999999999 677776533 458889999
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC--CcccccCCCCcEEEEEecCCccccCc
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL--PRDLSFFKMLQRYRILIGDSREYDAW 161 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~l~~~~~L~~L~i~~~~~~~~~~~ 161 (411)
|.+++|.+ ....++.++-+|..|++.+|++..+ ...+++++.|+++.+..+.....++.
T Consensus 357 L~La~N~i--------------E~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 357 LKLAQNKI--------------ETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eehhhhhH--------------hhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 99999876 4457788888999999999885544 34678999999998887665544443
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.5e-08 Score=91.32 Aligned_cols=134 Identities=17% Similarity=0.186 Sum_probs=97.7
Q ss_pred hhhccccCcEEEecCCcCCC----CccccccccCcEEEeeCCccccchHH--hcCCCCCCEEecCCCCCccccCcccccC
Q 038576 9 SLGLLQNLQTLSLDDCELGD----MAIIGDLKKLVILALRGSDMEELAGE--IGQLTQLRLLNLSKCFELKVIPPNVISS 82 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~L~~c~~~~~~~~~~l~~ 82 (411)
-...|.+++.|||+.|-+.. ....+.+++|+.|+++.|++...-.+ -..+.+|+.|.++.|.--..--...+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 46789999999999998776 25566899999999999987633221 2367899999999985432222223568
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC--cccccCCCCcEEEEEecC
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~~~~ 154 (411)
+++|+.|++.+|.... ........+..|++|++++|....++ ..++.++.|+.|.++.+.
T Consensus 221 fPsl~~L~L~~N~~~~------------~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIIL------------IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred CCcHHHhhhhcccccc------------eecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 8999999999995322 22345556778999999999877666 345677888888776444
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=7.9e-08 Score=84.10 Aligned_cols=58 Identities=22% Similarity=0.225 Sum_probs=27.2
Q ss_pred hhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCC-ccceeEEEe
Q 038576 114 DELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDG-ISRISKLKL 172 (411)
Q Consensus 114 ~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~-~~~l~~L~~ 172 (411)
++++-+|+++.|+++.|.+..+.. +..+++|++|+++++.......|.. +.++..|.+
T Consensus 301 ESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 444444555555555555444332 4445555555555444444444433 334444433
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=8.6e-07 Score=89.58 Aligned_cols=91 Identities=22% Similarity=0.370 Sum_probs=78.6
Q ss_pred CCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576 5 ALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 5 ~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
.+|..++++.+|+.|+|++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~ 511 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA-LG 511 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH-Hh
Confidence 578899999999999999999886 778999999999999999998 78999999999999999997666688876 55
Q ss_pred C-CCCccEEEeccccc
Q 038576 82 S-LSRLEELYIGQSPI 96 (411)
Q Consensus 82 ~-L~~L~~L~l~~~~~ 96 (411)
. ..++..+++.+|..
T Consensus 512 ~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 512 GRLLHRASFNFTDNAG 527 (623)
T ss_pred hccccCceEEecCCcc
Confidence 4 45677888877753
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=1.7e-06 Score=54.15 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=24.7
Q ss_pred ccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccC
Q 038576 36 KKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIP 76 (411)
Q Consensus 36 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~ 76 (411)
++|++|++++|.|+++|+.+++|++|++|++++ +.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCc
Confidence 356667777776666666666777777777776 3555554
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=1.4e-07 Score=90.95 Aligned_cols=128 Identities=23% Similarity=0.326 Sum_probs=95.4
Q ss_pred ccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576 12 LLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY 90 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~ 90 (411)
.+..++.++++.+.+.. ...++.+.+|..|++.++.|..+...+..+++|++|++++ +.++.+.. +..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc--hhhccchhhhe
Confidence 45666667777777777 5667888888888888888887766577888888888888 78888775 77888888888
Q ss_pred ecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCc
Q 038576 91 IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~ 156 (411)
+.+|.+. ....+..+..|+.+++++|....+... ...+.+++.+.+..+...
T Consensus 147 l~~N~i~--------------~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLIS--------------DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcch--------------hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 8888873 335566678888888888887666553 356777777777644433
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.14 E-value=6.5e-07 Score=80.05 Aligned_cols=248 Identities=16% Similarity=0.111 Sum_probs=149.0
Q ss_pred hhhccccCcEEEecCCcCCC------CccccccccCcEEEeeCC---ccc-cchHH-------hcCCCCCCEEecCCCCC
Q 038576 9 SLGLLQNLQTLSLDDCELGD------MAIIGDLKKLVILALRGS---DME-ELAGE-------IGQLTQLRLLNLSKCFE 71 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~l~~------~~~l~~l~~L~~L~L~~~---~l~-~lp~~-------i~~l~~L~~L~L~~c~~ 71 (411)
.+..+..+.+++++||.+.. -+.+.+.++|+.-+++.- +.. .+|.. +..+++|++|+||+|..
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 34567889999999999765 255667788999888874 333 55553 34677999999999533
Q ss_pred ccccCc---ccccCCCCccEEEecccccccCcccccccc--ccccchhhccCCCCCCEEEEeeccCCcCCc-----cccc
Q 038576 72 LKVIPP---NVISSLSRLEELYIGQSPIQWGKVEGVDGE--RRNASLDELNNLSKLTSLEILIQDEKTLPR-----DLSF 141 (411)
Q Consensus 72 ~~~~~~---~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~l~~ 141 (411)
-...+. ..|+++.+|++|.+.+|.+.. .--...+. .........++-++||.+....|+....+. .+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 222221 237789999999999997643 00000000 001133445667789999998888655443 3556
Q ss_pred CCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccc
Q 038576 142 FKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGI 221 (411)
Q Consensus 142 ~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l 221 (411)
.+.|+.+.+..+.... +++.-+ ...+..+++|+.| ++
T Consensus 184 ~~~leevr~~qN~I~~-------------------------------eG~~al------~eal~~~~~LevL------dl 220 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRP-------------------------------EGVTAL------AEALEHCPHLEVL------DL 220 (382)
T ss_pred ccccceEEEecccccC-------------------------------chhHHH------HHHHHhCCcceee------ec
Confidence 6788888876444220 000000 0023467888888 88
Q ss_pred cccccccc---cccccccCCCCCcEEEecCCcCCccC-CC----CCCCCCCcCeEeecCCCCCccccc--hHhhhccccc
Q 038576 222 NHRRELKQ---IFKQESSNAKDLEKLSIFMCDNLTHL-VP----SSTSFQNLTTLTVWGCHGMINVLT--SSTARSLVRL 291 (411)
Q Consensus 222 ~~~~~l~~---~~~~~~~~~~~L~~L~l~~c~~l~~~-~~----~~~~~~~L~~L~l~~c~~l~~~~~--~~~~~~l~~L 291 (411)
.++..-.. ........+++|++|++++|..-..- .. .....|+|+.|.+.+|..-.+-.. ...+...|.|
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 87653221 11222357788888888887543111 10 112377888888887765333110 1123446778
Q ss_pred cEEeEcccc
Q 038576 292 RQMTIKVCV 300 (411)
Q Consensus 292 ~~L~l~~c~ 300 (411)
+.|++++|.
T Consensus 301 ~kLnLngN~ 309 (382)
T KOG1909|consen 301 EKLNLNGNR 309 (382)
T ss_pred HHhcCCccc
Confidence 888888776
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=4.4e-06 Score=52.27 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=34.3
Q ss_pred ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH
Q 038576 14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG 53 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~ 53 (411)
++|++|++++|.+++ ++.++++++|++|++++|.+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999999999 7779999999999999999987754
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=1.7e-05 Score=74.25 Aligned_cols=133 Identities=23% Similarity=0.289 Sum_probs=74.4
Q ss_pred cchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhh
Q 038576 207 FKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTAR 286 (411)
Q Consensus 207 ~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 286 (411)
+.+++.| .+.+| .++.++. -.++|++|.+++|.++...+... .++|+.|++++|..++.++
T Consensus 51 ~~~l~~L------~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------ 111 (426)
T PRK15386 51 ARASGRL------YIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ 111 (426)
T ss_pred hcCCCEE------EeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------
Confidence 4667777 77777 4666552 34568888888887776554332 4578888888887665442
Q ss_pred ccccccEEeEccc--ccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCC
Q 038576 287 SLVRLRQMTIKVC--VMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCP 364 (411)
Q Consensus 287 ~l~~L~~L~l~~c--~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~ 364 (411)
++|+.|++.+. ..+..+ -++|+.|.+.+....... ..+... -++|++|.|.+|.
T Consensus 112 --~sLe~L~L~~n~~~~L~~L------------------PssLk~L~I~~~n~~~~~-~lp~~L---PsSLk~L~Is~c~ 167 (426)
T PRK15386 112 --ESVRSLEIKGSATDSIKNV------------------PNGLTSLSINSYNPENQA-RIDNLI---SPSLKTLSLTGCS 167 (426)
T ss_pred --cccceEEeCCCCCcccccC------------------cchHhheecccccccccc-cccccc---CCcccEEEecCCC
Confidence 45777776532 122222 235666665432211111 011111 1567777777776
Q ss_pred CCccccCCCCCCCCceEEEEe
Q 038576 365 NMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 365 ~l~~~p~~~~~~~~L~~l~l~ 385 (411)
.+. +|..+ +++|+.|.+.
T Consensus 168 ~i~-LP~~L--P~SLk~L~ls 185 (426)
T PRK15386 168 NII-LPEKL--PESLQSITLH 185 (426)
T ss_pred ccc-Ccccc--cccCcEEEec
Confidence 443 44433 5677777764
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.06 E-value=2e-06 Score=86.94 Aligned_cols=125 Identities=24% Similarity=0.282 Sum_probs=91.3
Q ss_pred ccCcEEEecCCc-CCC--Cccccc-cccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 14 QNLQTLSLDDCE-LGD--MAIIGD-LKKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 14 ~~L~~L~l~~~~-l~~--~~~l~~-l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
.+||+|+++|.. +.. +..++. +|.|+.|.+.|-.+. +.-....++++|..||+|+ .+++.+. + +++|++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~-G-IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLS-G-ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcH-H-HhccccHH
Confidence 578999999876 433 555664 699999999987654 4455567899999999999 6788873 4 89999999
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-------cccCCCCcEEEEEe
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-------LSFFKMLQRYRILI 152 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------l~~~~~L~~L~i~~ 152 (411)
.|.+.+-.+.. .....++-+|++|+.||++.......+.. -..+++|+.|+.++
T Consensus 199 ~L~mrnLe~e~-----------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 199 VLSMRNLEFES-----------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHhccCCCCCc-----------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 99887766532 14567888899999999987664333321 13477888888763
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=3.3e-05 Score=72.35 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=80.9
Q ss_pred cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCC
Q 038576 236 SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDN 315 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 315 (411)
..+++++.|++++| .+..++. ..++|+.|.+.+|..++.++. . + .++|++|++.+|.++..+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~-L--P~nLe~L~Ls~Cs~L~sL---------- 110 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-S-I--PEGLEKLTVCHCPEISGL---------- 110 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-h-h--hhhhhheEccCccccccc----------
Confidence 34688999999998 6666552 145799999999999887743 1 1 468999999999877655
Q ss_pred ccCccccccCCCCeeecCC--CcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEeccccch
Q 038576 316 YAAQDEIVFSELKELNLSN--LQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKL 391 (411)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c~~l 391 (411)
-+.|+.|++.. |..+..+ .++|+.|.+.++......+.....+++|+.|.+. +|...
T Consensus 111 --------P~sLe~L~L~~n~~~~L~~L----------PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is-~c~~i 169 (426)
T PRK15386 111 --------PESVRSLEIKGSATDSIKNV----------PNGLTSLSINSYNPENQARIDNLISPSLKTLSLT-GCSNI 169 (426)
T ss_pred --------ccccceEEeCCCCCcccccC----------cchHhheeccccccccccccccccCCcccEEEec-CCCcc
Confidence 34577777753 2233333 2688999886544322211112357899999997 67654
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=3.5e-06 Score=81.30 Aligned_cols=108 Identities=26% Similarity=0.330 Sum_probs=90.7
Q ss_pred hhccccCcEEEecCCcCCCCcc-ccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAI-IGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~-l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
+..+++|.+|++.+|.++.... +..+.+|++|++++|.|+.+. .+..++.|+.|++++ +.+..+.. +..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~--~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDISG--LESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheecc-CcchhccC--Cccchhhhc
Confidence 6778999999999999999555 899999999999999999874 477888899999999 78888875 778999999
Q ss_pred EEecccccccCccccccccccccchhh--ccCCCCCCEEEEeeccCCcC
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDE--LNNLSKLTSLEILIQDEKTL 135 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~ 135 (411)
+++++|.+.. + .. +..+.+++.+.+.++....+
T Consensus 167 l~l~~n~i~~--i------------e~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 167 LDLSYNRIVD--I------------ENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred ccCCcchhhh--h------------hhhhhhhccchHHHhccCCchhcc
Confidence 9999998753 1 22 57788888888888765544
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=9.5e-06 Score=71.28 Aligned_cols=101 Identities=25% Similarity=0.373 Sum_probs=62.5
Q ss_pred cEEEecCCcCCC---Ccccc-ccccCcEEEeeCCccc---cchHHhcCCCCCCEEecCCCCCccccCcccc-cCCCCccE
Q 038576 17 QTLSLDDCELGD---MAIIG-DLKKLVILALRGSDME---ELAGEIGQLTQLRLLNLSKCFELKVIPPNVI-SSLSRLEE 88 (411)
Q Consensus 17 ~~L~l~~~~l~~---~~~l~-~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l-~~L~~L~~ 88 (411)
..|.+.++.+.. ...|+ .++.++.|||.+|.|+ ++...+.+|+.|+.|+++.| .+...-.. + ..+.+|+.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~-lp~p~~nl~~ 125 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKS-LPLPLKNLRV 125 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCcccc-CcccccceEE
Confidence 355555665554 23343 3578888888888776 56666778888888888874 33321111 2 25568888
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeec
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ 130 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 130 (411)
+.+.++...|. ..-..+..+|++++++++.|
T Consensus 126 lVLNgT~L~w~-----------~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWT-----------QSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChh-----------hhhhhhhcchhhhhhhhccc
Confidence 88888877660 11244556666666666544
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=6.6e-07 Score=87.23 Aligned_cols=111 Identities=25% Similarity=0.237 Sum_probs=85.7
Q ss_pred hhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCc
Q 038576 8 SSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRL 86 (411)
Q Consensus 8 ~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L 86 (411)
+++.-+..|+.|+|+.|++++...+..+++|++|||+.|.+..+|.. ...+. |+.|.+++ +.++.+-. |.+|.+|
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL~g--ie~LksL 256 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTLRG--IENLKSL 256 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhhhh--HHhhhhh
Confidence 45666778999999999998877888899999999999988877753 23344 99999999 78888764 8899999
Q ss_pred cEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576 87 EELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK 133 (411)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 133 (411)
+.||+++|-+.. -..+.-+..+..|+.|.+.||...
T Consensus 257 ~~LDlsyNll~~-----------hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYNLLSE-----------HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHhhhhc-----------chhhhHHHHHHHHHHHhhcCCccc
Confidence 999999987643 022345556667888888887643
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.70 E-value=2e-06 Score=84.03 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCccccCcccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEE
Q 038576 70 FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYR 149 (411)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~ 149 (411)
+.++.+... +.-+++|++||+++|.+.. ...+..+++|++||+++|....+|..-..-..|+.|.
T Consensus 174 N~L~~mD~S-Lqll~ale~LnLshNk~~~--------------v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 174 NRLVLMDES-LQLLPALESLNLSHNKFTK--------------VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhHHhHHHH-HHHHHHhhhhccchhhhhh--------------hHHHHhcccccccccccchhccccccchhhhhheeee
Confidence 556666555 6677788888888877642 2467777788888888877777765322223377777
Q ss_pred EEecCCccccCcCCccceeEEEecC
Q 038576 150 ILIGDSREYDAWDGISRISKLKLTN 174 (411)
Q Consensus 150 i~~~~~~~~~~~~~~~~l~~L~~~~ 174 (411)
+.++...+.-+...+.++..|+++.
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhH
Confidence 7766655444433344444444433
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.70 E-value=4.6e-06 Score=82.24 Aligned_cols=36 Identities=25% Similarity=0.277 Sum_probs=18.5
Q ss_pred CCCCCEEecCCCCCccccC-cccccCCCCccEEEecc
Q 038576 58 LTQLRLLNLSKCFELKVIP-PNVISSLSRLEELYIGQ 93 (411)
Q Consensus 58 l~~L~~L~L~~c~~~~~~~-~~~l~~L~~L~~L~l~~ 93 (411)
+++|+.|.+.+|..+.+.. ......+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 5556666666555555421 11144556666666654
No 55
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.67 E-value=6e-06 Score=81.39 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=24.5
Q ss_pred cccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCcee
Q 038576 290 RLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSF 341 (411)
Q Consensus 290 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 341 (411)
.++.|++..|...+........ .....++.+++.+|+.+...
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~----------~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLA----------DSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred ccceEecccCccccccchHHHh----------hhhhccccCCccCcccccch
Confidence 3777777777655444322111 01566777777777776665
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=3.7e-05 Score=77.97 Aligned_cols=112 Identities=19% Similarity=0.263 Sum_probs=81.1
Q ss_pred ccccCcEEEecCCcCCC---CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccC-cccccCCCCcc
Q 038576 12 LLQNLQTLSLDDCELGD---MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIP-PNVISSLSRLE 87 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~-~~~l~~L~~L~ 87 (411)
.++.||.|.++|-.+.. .....++++|+.||+++++++.+ .+++++++||.|.+.+ -.+..-. -..+-.|++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCC
Confidence 45899999999977655 34456789999999999999988 7799999999999987 4444322 11266899999
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD 131 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 131 (411)
.||++........ .-...-.+--..+|+||.||.+++.
T Consensus 224 vLDIS~~~~~~~~------~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 224 VLDISRDKNNDDT------KIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred eeeccccccccch------HHHHHHHHhcccCccccEEecCCcc
Confidence 9999987643300 0000112333458999999999876
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=2.4e-05 Score=68.87 Aligned_cols=94 Identities=18% Similarity=0.221 Sum_probs=51.4
Q ss_pred CCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceec
Q 038576 263 QNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFS 342 (411)
Q Consensus 263 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 342 (411)
+.+++++...|.-..-.-......-||++..+.+..|+ +++....... -.+|.+-.|.+.. .++.+|.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~s----------e~~p~~~~LnL~~-~~idswa 240 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGS----------EPFPSLSCLNLGA-NNIDSWA 240 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccC----------CCCCcchhhhhcc-cccccHH
Confidence 45666666666443222222334567888888887777 5555443322 2466666666665 3566652
Q ss_pred cCCCcccccCCCcceEeecCCCCCcccc
Q 038576 343 CSGNNCAFKFPSLERLVVNRCPNMKIFS 370 (411)
Q Consensus 343 ~~~~~~~~~~~~L~~L~i~~C~~l~~~p 370 (411)
+..+. -.||+|..|++..-|-...+.
T Consensus 241 -svD~L-n~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 241 -SVDAL-NGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred -HHHHH-cCCchhheeeccCCccccccc
Confidence 21121 346778777777765444443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=3.9e-05 Score=66.43 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=41.2
Q ss_pred ccccCcEEEecCCcCCCCccccccccCcEEEeeCC--ccc-cchHHhcCCCCCCEEecCCCCCcccc---CcccccCCCC
Q 038576 12 LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGS--DME-ELAGEIGQLTQLRLLNLSKCFELKVI---PPNVISSLSR 85 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~--~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~---~~~~l~~L~~ 85 (411)
.+..|+.|++.++.++....+-.+++|++|.++.| ++. .++..+.++++|++|++++ ++++.+ +. +..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP--LKELEN 117 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch--hhhhcc
Confidence 34455555555555554444455556666666655 333 4444444456666666665 344332 21 344555
Q ss_pred ccEEEeccccc
Q 038576 86 LEELYIGQSPI 96 (411)
Q Consensus 86 L~~L~l~~~~~ 96 (411)
|..|++..|..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 55555555543
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.47 E-value=7.8e-06 Score=63.57 Aligned_cols=62 Identities=16% Similarity=0.346 Sum_probs=29.4
Q ss_pred cccccCcEEEeeCCccccchHHhc-CCCCCCEEecCCCCCccccCcccccCCCCccEEEeccccc
Q 038576 33 GDLKKLVILALRGSDMEELAGEIG-QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI 96 (411)
Q Consensus 33 ~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~ 96 (411)
....+|...+|++|.+...|..+. +.+....|++++ +.+.++|.+ +..++.|+.++++.|++
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSLNLRFNPL 112 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhcccccCcc
Confidence 334444444555555554444433 233445555554 445555544 44555555555554443
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00026 Score=58.97 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=57.6
Q ss_pred ccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchhh
Q 038576 36 KKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE 115 (411)
Q Consensus 36 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 115 (411)
.+...+|++.|.+..++ .+..++.|.+|.+++ +.++++....-.-+++|+.|.+.+|.+.. ......
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~-----------l~dl~p 108 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQE-----------LGDLDP 108 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhh-----------hhhcch
Confidence 35566666666555443 255666667776666 56666655533345567777776666532 123345
Q ss_pred ccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEEE
Q 038576 116 LNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRIL 151 (411)
Q Consensus 116 l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i~ 151 (411)
+..+++|++|.+-+|....-+. .+..+++|+.|+..
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence 5566666666666665333221 23455666666543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.42 E-value=0.00024 Score=59.20 Aligned_cols=105 Identities=21% Similarity=0.330 Sum_probs=81.2
Q ss_pred cCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhc-CCCCCCEEecCCCCCccccCc-ccccCCCCccEEEec
Q 038576 15 NLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIG-QLTQLRLLNLSKCFELKVIPP-NVISSLSRLEELYIG 92 (411)
Q Consensus 15 ~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~-~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~L~~L~l~ 92 (411)
+...+||++|.+...+.|..++.|.+|.+..|+|+.+.+.+. .+++|+.|.+.+ +.+.++.+ .-+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeec
Confidence 456789999998888888899999999999999998877776 467899999999 56666532 116789999999999
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEee
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILI 129 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 129 (411)
+|++.. .-. --.-.+..+++|+.||...
T Consensus 122 ~Npv~~-k~~--------YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEH-KKN--------YRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhc-ccC--------ceeEEEEecCcceEeehhh
Confidence 998754 100 1123456789999999865
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.28 E-value=2.3e-05 Score=61.01 Aligned_cols=103 Identities=19% Similarity=0.231 Sum_probs=84.7
Q ss_pred cccCcEEEeeCCccccchH---HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCcccccccccccc
Q 038576 35 LKKLVILALRGSDMEELAG---EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNA 111 (411)
Q Consensus 35 l~~L~~L~L~~~~l~~lp~---~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 111 (411)
...+..++|+.|.+..++. .+...++|...++++ +.++++|..+-.+.+.+..+++++|.+. .
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neis-------------d 91 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEIS-------------D 91 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhh-------------h
Confidence 4567889999997775554 455677888889999 7999999885567779999999999886 3
Q ss_pred chhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576 112 SLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 151 (411)
Q Consensus 112 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 151 (411)
.+.++..++.|+.+++..|.+...|..+..+.++-.|+.-
T Consensus 92 vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 92 VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 5688999999999999999999999888777777777654
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=1.5e-05 Score=69.32 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=64.9
Q ss_pred ccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCc-ccccCCCCccEEE
Q 038576 12 LLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPP-NVISSLSRLEELY 90 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~-~~l~~L~~L~~L~ 90 (411)
.+.+.+.|+..||++.+.....+++.|++|.|+-|+|+.+.+ +..|++|+.|+|+. +.+.++.. .-+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHh
Confidence 356778889999998887777888899999999998887743 77888999999988 67777653 1256788888888
Q ss_pred eccccc
Q 038576 91 IGQSPI 96 (411)
Q Consensus 91 l~~~~~ 96 (411)
+..|+-
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 877753
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.01 E-value=0.00026 Score=63.75 Aligned_cols=155 Identities=19% Similarity=0.225 Sum_probs=92.7
Q ss_pred hhhccccCcEEEecCCc---CCC--C-------ccccccccCcEEEeeCCccc--c---chHHhcCCCCCCEEecCCCCC
Q 038576 9 SLGLLQNLQTLSLDDCE---LGD--M-------AIIGDLKKLVILALRGSDME--E---LAGEIGQLTQLRLLNLSKCFE 71 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~---l~~--~-------~~l~~l~~L~~L~L~~~~l~--~---lp~~i~~l~~L~~L~L~~c~~ 71 (411)
.+.+-++|+..++++-. +.. | +.+..+++|++||||.|-|. . +-..+..+..|++|.|.+|.
T Consensus 53 ~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G- 131 (382)
T KOG1909|consen 53 VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG- 131 (382)
T ss_pred HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-
Confidence 35556678888877643 222 3 22345668888888888554 2 22346678888888888863
Q ss_pred ccccCcc-------------cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc----
Q 038576 72 LKVIPPN-------------VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT---- 134 (411)
Q Consensus 72 ~~~~~~~-------------~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---- 134 (411)
+...... .+++-+.|+.+..++|....+... .....+...+.|+.+.++.|.+..
T Consensus 132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~--------~~A~~~~~~~~leevr~~qN~I~~eG~~ 203 (382)
T KOG1909|consen 132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGAT--------ALAEAFQSHPTLEEVRLSQNGIRPEGVT 203 (382)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHH--------HHHHHHHhccccceEEEecccccCchhH
Confidence 2211111 144567788888888765431111 334566667788888888776321
Q ss_pred -CCcccccCCCCcEEEEEecCCcc---------ccCcCCccceeEEEecCC
Q 038576 135 -LPRDLSFFKMLQRYRILIGDSRE---------YDAWDGISRISKLKLTNG 175 (411)
Q Consensus 135 -~~~~l~~~~~L~~L~i~~~~~~~---------~~~~~~~~~l~~L~~~~~ 175 (411)
+...+..+++|+.|++..+.... ++.| ..++.+++.+|
T Consensus 204 al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~---~~L~El~l~dc 251 (382)
T KOG1909|consen 204 ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW---PHLRELNLGDC 251 (382)
T ss_pred HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc---chheeeccccc
Confidence 22335678888888887665432 3333 35677776664
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=6.2e-05 Score=65.67 Aligned_cols=100 Identities=22% Similarity=0.324 Sum_probs=78.8
Q ss_pred cccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchh
Q 038576 35 LKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLD 114 (411)
Q Consensus 35 l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 114 (411)
+.+.+.|+.-||.+.++. .+.+|+.|++|.|+- ++++.+.. +..|++|+.|+|..|.|.. ..-+.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSv-NkIssL~p--l~rCtrLkElYLRkN~I~s-----------ldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSV-NKISSLAP--LQRCTRLKELYLRKNCIES-----------LDELE 82 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeec-cccccchh--HHHHHHHHHHHHHhccccc-----------HHHHH
Confidence 567788899999998773 467999999999999 78999876 8999999999999998742 24467
Q ss_pred hccCCCCCCEEEEeeccCC-cCC-----cccccCCCCcEEE
Q 038576 115 ELNNLSKLTSLEILIQDEK-TLP-----RDLSFFKMLQRYR 149 (411)
Q Consensus 115 ~l~~l~~L~~L~l~~~~~~-~~~-----~~l~~~~~L~~L~ 149 (411)
.+.++++|+.|.+..|... .-+ ..+.-+++|++|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7889999999999887622 111 1245678888885
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.76 E-value=0.0044 Score=48.94 Aligned_cols=104 Identities=14% Similarity=0.244 Sum_probs=60.0
Q ss_pred hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCC
Q 038576 8 SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLS 84 (411)
Q Consensus 8 ~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~ 84 (411)
..|.++.+|+.+.+.. .++. ...|.++.+|+.+.+.++ +..++. .+.++++++.+.+.+ .+..++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 3478888999999875 4555 466788888999998875 666654 367787899998865 56666666677889
Q ss_pred CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEee
Q 038576 85 RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILI 129 (411)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 129 (411)
+|+.+++..+ +.. -....+.+. +|+.+.+..
T Consensus 82 ~l~~i~~~~~-~~~------------i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN-ITE------------IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT--BE------------EHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc-ccE------------EchhhhcCC-CceEEEECC
Confidence 9999988654 221 122556666 777777654
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.62 E-value=0.001 Score=58.15 Aligned_cols=141 Identities=18% Similarity=0.237 Sum_probs=90.7
Q ss_pred hhhccccCcEEEecCCcCCC--Cc----cccccccCcEEEeeCC---ccc-cchH-------HhcCCCCCCEEecCCCCC
Q 038576 9 SLGLLQNLQTLSLDDCELGD--MA----IIGDLKKLVILALRGS---DME-ELAG-------EIGQLTQLRLLNLSKCFE 71 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~l~~--~~----~l~~l~~L~~L~L~~~---~l~-~lp~-------~i~~l~~L~~L~L~~c~~ 71 (411)
.+..+..+..++||||.+.. .. .+.+-.+|+.-+++.- +.. .+|. .+-+|++|+..+||+|..
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34457788899999999876 33 3445578888877763 222 3443 456889999999999655
Q ss_pred ccccCcc---cccCCCCccEEEecccccccCccccccccccc------cchhhccCCCCCCEEEEeeccCCcCCcc----
Q 038576 72 LKVIPPN---VISSLSRLEELYIGQSPIQWGKVEGVDGERRN------ASLDELNNLSKLTSLEILIQDEKTLPRD---- 138 (411)
Q Consensus 72 ~~~~~~~---~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~---- 138 (411)
-...|.. .|++-+.|++|.+++|..-. +. +.+.. +.-+...+-|.|+.+....|+....+..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp--~a---G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGP--IA---GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCc--cc---hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 4444432 36788899999999886532 11 11111 2223345667889988888886666543
Q ss_pred -cccCCCCcEEEEEecC
Q 038576 139 -LSFFKMLQRYRILIGD 154 (411)
Q Consensus 139 -l~~~~~L~~L~i~~~~ 154 (411)
+....+|+.+.|..+.
T Consensus 180 ~l~sh~~lk~vki~qNg 196 (388)
T COG5238 180 LLESHENLKEVKIQQNG 196 (388)
T ss_pred HHHhhcCceeEEeeecC
Confidence 2334577777776444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.60 E-value=0.001 Score=34.62 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=12.6
Q ss_pred cCcEEEeeCCccccchHHhcC
Q 038576 37 KLVILALRGSDMEELAGEIGQ 57 (411)
Q Consensus 37 ~L~~L~L~~~~l~~lp~~i~~ 57 (411)
+|++|++++|+++.+|+.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.30 E-value=0.0018 Score=56.29 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=73.1
Q ss_pred ccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCC--ccccCcccccCCCCccEEEecccccccCcccccccccc
Q 038576 32 IGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFE--LKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERR 109 (411)
Q Consensus 32 l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~--~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 109 (411)
...+.+|+.|++.++.++.+. .+-.|++|++|.++.++. ...++.- ..++++|+++++++|.+.. .
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~---l------- 106 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD---L------- 106 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc---c-------
Confidence 445677888888887766442 355788999999999622 3333332 4567999999999998852 1
Q ss_pred ccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEEEecC
Q 038576 110 NASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRILIGD 154 (411)
Q Consensus 110 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i~~~~ 154 (411)
.....+..+++|..|++..|.....-. .+.-+++|..|+-....
T Consensus 107 -stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 107 -STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred -cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 445677778888889988887444321 23345777777654333
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.0014 Score=54.82 Aligned_cols=69 Identities=14% Similarity=0.252 Sum_probs=43.5
Q ss_pred cCCCCCcEEEecCCcCCccCC--CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccc
Q 038576 236 SNAKDLEKLSIFMCDNLTHLV--PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEI 305 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~~l~~~~--~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 305 (411)
..++.++.|.+.+|..+.++- -.....++|+.|+|++|+.+++. ....+..+++|+.|.+.+.+.+...
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhch
Confidence 455666677777776663321 11123678888888888888776 3445677777777777776544333
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.0025 Score=53.30 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=15.5
Q ss_pred CCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 59 TQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 59 ~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
++|+.|++++|..+++-....+.++++|+.|++.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 4444555554444444433334444444444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.05 E-value=0.015 Score=27.94 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=5.6
Q ss_pred cCcEEEeeCCccccc
Q 038576 37 KLVILALRGSDMEEL 51 (411)
Q Consensus 37 ~L~~L~L~~~~l~~l 51 (411)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344455555444443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.78 E-value=0.013 Score=30.41 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=16.8
Q ss_pred cCcEEEecCCcCCC-Ccccccc
Q 038576 15 NLQTLSLDDCELGD-MAIIGDL 35 (411)
Q Consensus 15 ~L~~L~l~~~~l~~-~~~l~~l 35 (411)
+|++|++++|.++. |+.|+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 58999999999988 7667653
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.63 E-value=0.0026 Score=54.34 Aligned_cols=87 Identities=14% Similarity=0.070 Sum_probs=69.6
Q ss_pred hhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 9 SLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
.+......+.||++.+.+.. -..|+-++.|..||++.+.+..+|..++.+..++.+++.. ++....|.+ .+++++++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s-~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKS-QKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCcc-ccccCCcc
Confidence 45666778888888888777 5667777888888888888888888888888888888777 678888877 88888888
Q ss_pred EEEecccccc
Q 038576 88 ELYIGQSPIQ 97 (411)
Q Consensus 88 ~L~l~~~~~~ 97 (411)
+++..++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888887653
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.38 E-value=0.26 Score=38.67 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=51.4
Q ss_pred ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccc
Q 038576 30 AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGER 108 (411)
Q Consensus 30 ~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 108 (411)
..|.++.+|+.+.+.. .+..++. .+.++++|+.+.+.+ .+..++..++..+++++.+.+..+.. .
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~~~-~---------- 71 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPNNLK-S---------- 71 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETSTT--E----------
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeeccccccccccccccc-c----------
Confidence 3466677888888775 4555554 366777888888876 37777776677887888888865321 1
Q ss_pred cccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEE
Q 038576 109 RNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRI 150 (411)
Q Consensus 109 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i 150 (411)
.....+..+++|+.+.+..+ ...++. .+..+ +++.+.+
T Consensus 72 --i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 72 --IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp --E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred --cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEE
Confidence 12245566777777777543 222322 23333 5665544
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.17 E-value=0.099 Score=46.10 Aligned_cols=156 Identities=18% Similarity=0.205 Sum_probs=94.2
Q ss_pred hhhhccccCcEEEecCCcC---CC--C-------ccccccccCcEEEeeCCccc-cch----HHhcCCCCCCEEecCCCC
Q 038576 8 SSLGLLQNLQTLSLDDCEL---GD--M-------AIIGDLKKLVILALRGSDME-ELA----GEIGQLTQLRLLNLSKCF 70 (411)
Q Consensus 8 ~~l~~l~~L~~L~l~~~~l---~~--~-------~~l~~l~~L~~L~L~~~~l~-~lp----~~i~~l~~L~~L~L~~c~ 70 (411)
..+.+-.+|+..++++-.. .+ + +.+-+|++|+..+|+.|-|. ..| ..|++-+.|.+|.+++|
T Consensus 52 ~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn- 130 (388)
T COG5238 52 NVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN- 130 (388)
T ss_pred HHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-
Confidence 3456667888888877532 22 2 34557888888888888655 332 35677788888888885
Q ss_pred CccccCccc-------------ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC--
Q 038576 71 ELKVIPPNV-------------ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-- 135 (411)
Q Consensus 71 ~~~~~~~~~-------------l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-- 135 (411)
.+.-+..+- .+.-|.|+.+....|.+..+... .....+..-..|.++.+..|.+..-
T Consensus 131 GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~--------~~a~~l~sh~~lk~vki~qNgIrpegv 202 (388)
T COG5238 131 GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE--------LSAALLESHENLKEVKIQQNGIRPEGV 202 (388)
T ss_pred CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH--------HHHHHHHhhcCceeEEeeecCcCcchh
Confidence 443322111 23457788888888765431111 1223344446788888888764321
Q ss_pred ----CcccccCCCCcEEEEEecCCcc---------ccCcCCccceeEEEecCC
Q 038576 136 ----PRDLSFFKMLQRYRILIGDSRE---------YDAWDGISRISKLKLTNG 175 (411)
Q Consensus 136 ----~~~l~~~~~L~~L~i~~~~~~~---------~~~~~~~~~l~~L~~~~~ 175 (411)
--.+..+++|+.|++..+..+. .++|.. +++|.+.+|
T Consensus 203 ~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~---lrEL~lnDC 252 (388)
T COG5238 203 TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL---LRELRLNDC 252 (388)
T ss_pred HHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch---hhhccccch
Confidence 1123567889999988765432 345533 566666554
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.34 E-value=0.21 Score=26.82 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=8.9
Q ss_pred ccCcEEEeeCCccccchH
Q 038576 36 KKLVILALRGSDMEELAG 53 (411)
Q Consensus 36 ~~L~~L~L~~~~l~~lp~ 53 (411)
++|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555554444
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.34 E-value=0.21 Score=26.82 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=8.9
Q ss_pred ccCcEEEeeCCccccchH
Q 038576 36 KKLVILALRGSDMEELAG 53 (411)
Q Consensus 36 ~~L~~L~L~~~~l~~lp~ 53 (411)
++|++|++++|.++.+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555554444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.46 E-value=0.4 Score=25.72 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=15.0
Q ss_pred CCCCCEEecCCCCCccccCcccc
Q 038576 58 LTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 58 l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
+++|++|++++ +.++.+|.+++
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 45677778777 57777776533
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.46 E-value=0.4 Score=25.72 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=15.0
Q ss_pred CCCCCEEecCCCCCccccCcccc
Q 038576 58 LTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 58 l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
+++|++|++++ +.++.+|.+++
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHHHc
Confidence 45677778777 57777776533
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.85 E-value=0.36 Score=25.97 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=8.0
Q ss_pred CCCCeeecCCCcCCce
Q 038576 325 SELKELNLSNLQSLTS 340 (411)
Q Consensus 325 ~~L~~L~l~~c~~l~~ 340 (411)
|+|++|++++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 4455555555554443
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.18 E-value=0.79 Score=23.99 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=6.1
Q ss_pred ccCcEEEeeCCccc
Q 038576 36 KKLVILALRGSDME 49 (411)
Q Consensus 36 ~~L~~L~L~~~~l~ 49 (411)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=68.26 E-value=0.18 Score=43.54 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=51.6
Q ss_pred hhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCC
Q 038576 9 SLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCF 70 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~ 70 (411)
.|..+..+..|+++.+.+.. |.+++....++.+++..|+.+..|.++++.++++++++.++.
T Consensus 60 n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred chHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 35556677788888888877 888888889999999888888889889999999999988854
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.15 E-value=3.9 Score=22.04 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=6.5
Q ss_pred CcEEEeeCCccccch
Q 038576 38 LVILALRGSDMEELA 52 (411)
Q Consensus 38 L~~L~L~~~~l~~lp 52 (411)
|++|++++|.++.+|
T Consensus 4 L~~L~vs~N~Lt~LP 18 (26)
T smart00364 4 LKELNVSNNQLTSLP 18 (26)
T ss_pred cceeecCCCccccCc
Confidence 444444444444443
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.91 E-value=5.6 Score=21.44 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=5.6
Q ss_pred cCcEEEeeCCcc
Q 038576 37 KLVILALRGSDM 48 (411)
Q Consensus 37 ~L~~L~L~~~~l 48 (411)
+|+.|++++|+|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444444
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.91 E-value=6.7 Score=21.43 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=6.5
Q ss_pred cCcEEEecCCcCC
Q 038576 15 NLQTLSLDDCELG 27 (411)
Q Consensus 15 ~L~~L~l~~~~l~ 27 (411)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.10 E-value=4.8 Score=39.47 Aligned_cols=65 Identities=18% Similarity=0.114 Sum_probs=34.3
Q ss_pred cCCCCCcEEEecCCc--CCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 236 SNAKDLEKLSIFMCD--NLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~--~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
..++.+..+.+++.. .++.........|+|+.|+|+++....+......--+..-|++|-+.+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 466777777776622 22344444445777888888777322111111111223456677777665
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=39.84 E-value=17 Score=35.73 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=29.4
Q ss_pred ccccCcEEEeeCCccc---cchHHhcCCCCCCEEecCCCC-CccccCcccccC--CCCccEEEecccccc
Q 038576 34 DLKKLVILALRGSDME---ELAGEIGQLTQLRLLNLSKCF-ELKVIPPNVISS--LSRLEELYIGQSPIQ 97 (411)
Q Consensus 34 ~l~~L~~L~L~~~~l~---~lp~~i~~l~~L~~L~L~~c~-~~~~~~~~~l~~--L~~L~~L~l~~~~~~ 97 (411)
+.+.+..+.++.|++. .+......-++|+.|+|+++. .+...+ + +.+ ...|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-e-l~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-E-LDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-h-hhhhcCCCHHHeeecCCccc
Confidence 3455556666666444 222223345666666666631 222211 1 332 234556666666553
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.80 E-value=1.3 Score=43.52 Aligned_cols=131 Identities=24% Similarity=0.256 Sum_probs=68.9
Q ss_pred cCcEEEecCCcCCC------CccccccccCcEEEeeCCccc-----cchHHhc----CCCCCCEEecCCCCCcc----cc
Q 038576 15 NLQTLSLDDCELGD------MAIIGDLKKLVILALRGSDME-----ELAGEIG----QLTQLRLLNLSKCFELK----VI 75 (411)
Q Consensus 15 ~L~~L~l~~~~l~~------~~~l~~l~~L~~L~L~~~~l~-----~lp~~i~----~l~~L~~L~L~~c~~~~----~~ 75 (411)
.+++|.+..|.++. ...+....+++.++++.|.+. .++..+. ...++++|++++|.-.. .+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 45566677776554 244555677777777777552 2223333 46667777777753221 11
Q ss_pred CcccccCCCC-ccEEEecccccccCccccccccccccchhhccCC-CCCCEEEEeeccCCc-----CCcccccCCCCcEE
Q 038576 76 PPNVISSLSR-LEELYIGQSPIQWGKVEGVDGERRNASLDELNNL-SKLTSLEILIQDEKT-----LPRDLSFFKMLQRY 148 (411)
Q Consensus 76 ~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L 148 (411)
. .++...++ +..+++..|.+... +.....+.+..+ ..++++++..|.+.. +...+..++.++.+
T Consensus 225 ~-~~l~~~~~~~~el~l~~n~l~d~--------g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l 295 (478)
T KOG4308|consen 225 D-EVLASGESLLRELDLASNKLGDV--------GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEEL 295 (478)
T ss_pred H-HHHhccchhhHHHHHHhcCcchH--------HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHh
Confidence 1 12444455 55577766655320 111223444444 566777777665332 22334455666776
Q ss_pred EEEecC
Q 038576 149 RILIGD 154 (411)
Q Consensus 149 ~i~~~~ 154 (411)
.+..+.
T Consensus 296 ~l~~n~ 301 (478)
T KOG4308|consen 296 SLSNNP 301 (478)
T ss_pred hcccCc
Confidence 666444
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.17 E-value=4.5 Score=39.78 Aligned_cols=118 Identities=22% Similarity=0.194 Sum_probs=78.5
Q ss_pred CChhhhccccCcEEEecCCcCCC------Ccccc----ccccCcEEEeeCCccc-----cchHHhcCCCC-CCEEecCCC
Q 038576 6 LPSSLGLLQNLQTLSLDDCELGD------MAIIG----DLKKLVILALRGSDME-----ELAGEIGQLTQ-LRLLNLSKC 69 (411)
Q Consensus 6 lp~~l~~l~~L~~L~l~~~~l~~------~~~l~----~l~~L~~L~L~~~~l~-----~lp~~i~~l~~-L~~L~L~~c 69 (411)
+.+.+....+++.++++.|.+.. +..+. ...++++|.+.+|.++ .+-..+...+. ++.|++..
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~- 242 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS- 242 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-
Confidence 34556667888888998887532 23344 4678999999998766 12234555555 77788887
Q ss_pred CCcccc-----CcccccCC-CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576 70 FELKVI-----PPNVISSL-SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK 133 (411)
Q Consensus 70 ~~~~~~-----~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 133 (411)
+.+.+. ... +..+ ..+++++++.|.+..... ......+..+++++.+.+..+...
T Consensus 243 n~l~d~g~~~L~~~-l~~~~~~l~~l~l~~nsi~~~~~--------~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPC-LSVLSETLRVLDLSRNSITEKGV--------RDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cCcchHHHHHHHHH-hcccchhhhhhhhhcCCccccch--------HHHHHHHhhhHHHHHhhcccCccc
Confidence 455433 222 4455 677899999998765222 255677788888899998887643
Done!