Query 038576
Match_columns 411
No_of_seqs 180 out of 2324
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 21:39:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-26 3.6E-31 234.1 21.4 135 236-387 396-531 (606)
2 3t6q_A CD180 antigen; protein- 99.9 6.7E-26 2.3E-30 228.2 25.2 136 3-153 24-163 (606)
3 4eco_A Uncharacterized protein 99.9 5.9E-27 2E-31 236.6 16.6 317 29-387 199-597 (636)
4 3t6q_A CD180 antigen; protein- 99.9 1.5E-25 5.2E-30 225.6 24.7 95 3-98 45-143 (606)
5 3vq2_A TLR4, TOLL-like recepto 99.9 4.2E-25 1.4E-29 222.4 27.9 244 118-387 283-555 (606)
6 2id5_A Lingo-1, leucine rich r 99.9 2.6E-25 9E-30 217.4 25.6 304 2-387 22-330 (477)
7 1o6v_A Internalin A; bacterial 99.9 7.8E-25 2.7E-29 213.4 28.2 316 10-385 64-383 (466)
8 4ecn_A Leucine-rich repeat pro 99.9 2E-25 6.9E-30 230.1 23.5 321 6-385 481-835 (876)
9 4eco_A Uncharacterized protein 99.9 8.6E-26 2.9E-30 228.1 19.5 319 6-370 239-603 (636)
10 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-25 9.8E-30 221.0 22.5 140 2-155 16-160 (549)
11 2z63_A TOLL-like receptor 4, v 99.9 2.2E-25 7.5E-30 222.8 21.1 154 206-386 371-527 (570)
12 4fmz_A Internalin; leucine ric 99.9 8.8E-25 3E-29 204.7 23.3 302 10-385 40-341 (347)
13 2z7x_B TOLL-like receptor 1, v 99.9 1E-24 3.5E-29 215.6 24.3 135 2-155 11-150 (520)
14 3o6n_A APL1; leucine-rich repe 99.9 7.7E-25 2.6E-29 208.5 21.0 303 12-387 43-349 (390)
15 3v47_A TOLL-like receptor 5B a 99.9 1.6E-24 5.3E-29 210.6 23.0 345 2-387 21-405 (455)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.4E-24 4.7E-29 216.0 22.3 352 3-386 38-506 (549)
17 1ziw_A TOLL-like receptor 3; i 99.9 6.9E-24 2.4E-28 216.4 27.8 160 2-176 15-182 (680)
18 4ecn_A Leucine-rich repeat pro 99.9 2.6E-25 8.7E-30 229.3 17.2 327 29-385 441-814 (876)
19 3rgz_A Protein brassinosteroid 99.9 2.5E-25 8.6E-30 229.6 16.4 268 12-300 267-549 (768)
20 1o6v_A Internalin A; bacterial 99.9 1.6E-23 5.6E-28 204.0 28.2 316 11-385 43-361 (466)
21 2z63_A TOLL-like receptor 4, v 99.9 6.4E-24 2.2E-28 212.1 25.7 354 3-386 64-503 (570)
22 1ziw_A TOLL-like receptor 3; i 99.9 7.9E-24 2.7E-28 216.0 26.7 139 3-154 37-182 (680)
23 3rgz_A Protein brassinosteroid 99.9 9.5E-25 3.3E-29 225.3 20.0 336 11-386 197-547 (768)
24 2z7x_B TOLL-like receptor 1, v 99.9 8.2E-24 2.8E-28 209.1 25.5 111 3-132 33-150 (520)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.3E-24 2.8E-28 211.0 25.4 135 2-155 42-181 (562)
26 3oja_B Anopheles plasmodium-re 99.9 5.9E-24 2E-28 213.4 21.0 302 12-386 49-354 (597)
27 4fmz_A Internalin; leucine ric 99.9 2.5E-23 8.6E-28 194.8 23.7 289 3-364 56-344 (347)
28 3j0a_A TOLL-like receptor 5; m 99.9 6.9E-23 2.3E-27 213.6 28.2 339 2-387 15-436 (844)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-23 6.6E-28 202.4 22.4 310 7-386 35-348 (457)
30 3o6n_A APL1; leucine-rich repe 99.9 6E-24 2E-28 202.3 16.8 298 34-405 43-344 (390)
31 3v47_A TOLL-like receptor 5B a 99.9 3.4E-23 1.2E-27 201.2 22.3 324 3-364 42-406 (455)
32 4g8a_A TOLL-like receptor 4; l 99.9 9.1E-23 3.1E-27 206.2 25.4 109 260-386 466-576 (635)
33 2id5_A Lingo-1, leucine rich r 99.9 2.6E-23 8.9E-28 203.2 20.5 280 3-336 44-331 (477)
34 3j0a_A TOLL-like receptor 5; m 99.9 8.1E-23 2.8E-27 213.0 22.9 135 7-153 41-184 (844)
35 4fcg_A Uncharacterized protein 99.9 1.7E-22 5.6E-27 187.6 19.5 137 13-154 80-217 (328)
36 3oja_B Anopheles plasmodium-re 99.9 5.5E-23 1.9E-27 206.3 15.9 281 34-386 49-333 (597)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-21 4E-26 195.4 24.2 145 12-175 29-179 (562)
38 1xku_A Decorin; proteoglycan, 99.9 1.6E-21 5.5E-26 181.2 23.1 288 14-385 31-327 (330)
39 2ft3_A Biglycan; proteoglycan, 99.9 7.9E-22 2.7E-26 183.5 20.4 298 3-385 16-328 (332)
40 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-21 8.5E-26 180.1 21.9 112 3-132 45-159 (332)
41 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-21 6E-26 188.6 20.0 290 3-369 54-354 (457)
42 4g8a_A TOLL-like receptor 4; l 99.9 2.5E-21 8.5E-26 195.6 19.6 139 2-155 42-185 (635)
43 4fcg_A Uncharacterized protein 99.9 1.2E-21 4E-26 181.8 15.4 210 2-299 92-311 (328)
44 1jl5_A Outer protein YOPM; leu 99.9 1.1E-21 3.7E-26 189.9 15.8 86 3-96 23-123 (454)
45 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-21 3.6E-26 181.0 12.4 246 14-338 50-304 (313)
46 1xku_A Decorin; proteoglycan, 99.9 4.6E-20 1.6E-24 171.4 21.9 266 36-388 31-304 (330)
47 3zyj_A Leucine-rich repeat-con 99.8 3.7E-20 1.3E-24 179.0 17.8 232 2-300 54-290 (440)
48 2z80_A TOLL-like receptor 2, v 99.8 4.7E-20 1.6E-24 173.0 18.0 276 11-386 28-310 (353)
49 3zyi_A Leucine-rich repeat-con 99.8 3.2E-20 1.1E-24 180.0 17.3 231 3-300 66-301 (452)
50 1ogq_A PGIP-2, polygalacturona 99.8 5.7E-21 1.9E-25 176.1 10.2 233 5-304 67-306 (313)
51 1jl5_A Outer protein YOPM; leu 99.8 3.4E-19 1.2E-23 172.5 22.7 305 3-385 83-404 (454)
52 2z80_A TOLL-like receptor 2, v 99.8 7.8E-20 2.7E-24 171.5 17.2 261 2-337 42-313 (353)
53 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-19 1.5E-23 177.2 22.9 252 14-385 40-292 (622)
54 3zyi_A Leucine-rich repeat-con 99.8 7.6E-19 2.6E-23 170.3 22.3 121 16-151 56-179 (452)
55 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-19 5.1E-24 164.4 16.1 125 14-150 32-160 (285)
56 3zyj_A Leucine-rich repeat-con 99.8 7.3E-19 2.5E-23 169.8 21.9 121 16-151 45-168 (440)
57 2z66_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 163.5 18.3 234 3-336 19-259 (306)
58 3g06_A SSPH2 (leucine-rich rep 99.8 2.1E-18 7.3E-23 172.2 21.3 244 2-336 51-295 (622)
59 2z66_A Variable lymphocyte rec 99.8 3E-19 1E-23 164.1 12.2 214 2-276 39-261 (306)
60 2xwt_C Thyrotropin receptor; s 99.8 1E-18 3.5E-23 154.5 13.9 82 15-96 32-117 (239)
61 3o53_A Protein LRIM1, AGAP0063 99.8 5.5E-20 1.9E-24 169.8 5.4 263 16-369 12-278 (317)
62 3ogk_B Coronatine-insensitive 99.8 1.7E-20 5.9E-25 188.1 1.3 132 12-152 110-252 (592)
63 2z62_A TOLL-like receptor 4, v 99.8 4.8E-18 1.6E-22 153.6 15.4 138 2-154 18-160 (276)
64 3o53_A Protein LRIM1, AGAP0063 99.8 2.8E-19 9.4E-24 165.1 6.8 246 10-341 30-278 (317)
65 1ozn_A Reticulon 4 receptor; N 99.8 1.8E-17 6.1E-22 150.6 18.5 219 17-300 14-236 (285)
66 3ogk_B Coronatine-insensitive 99.8 2.7E-19 9.4E-24 179.4 7.2 79 16-96 140-232 (592)
67 2xwt_C Thyrotropin receptor; s 99.8 1.4E-17 4.8E-22 147.2 15.7 106 25-146 22-130 (239)
68 3oja_A Leucine-rich immune mol 99.8 1.2E-17 4E-22 163.2 16.4 83 237-337 167-249 (487)
69 1z7x_W Ribonuclease inhibitor; 99.8 3.3E-20 1.1E-24 180.4 -2.2 135 10-154 24-181 (461)
70 1h6u_A Internalin H; cell adhe 99.7 1.9E-17 6.7E-22 152.0 14.6 196 10-305 37-232 (308)
71 2o6q_A Variable lymphocyte rec 99.7 3.2E-17 1.1E-21 147.7 15.6 197 15-275 17-217 (270)
72 4ay9_X Follicle-stimulating ho 99.7 1.1E-16 3.6E-21 149.9 19.2 113 10-137 6-121 (350)
73 3rfs_A Internalin B, repeat mo 99.7 4.9E-17 1.7E-21 146.6 14.8 127 10-150 37-164 (272)
74 4ay9_X Follicle-stimulating ho 99.7 8.9E-17 3E-21 150.4 16.1 229 2-298 20-255 (350)
75 2p1m_B Transport inhibitor res 99.7 5.8E-19 2E-23 177.1 1.0 61 324-389 455-517 (594)
76 2o6q_A Variable lymphocyte rec 99.7 1.8E-16 6.3E-21 142.7 17.4 198 37-300 17-216 (270)
77 1wwl_A Monocyte differentiatio 99.7 6E-18 2.1E-22 155.8 5.8 125 10-151 39-181 (312)
78 3oja_A Leucine-rich immune mol 99.7 2.3E-16 8E-21 153.9 17.2 57 37-96 35-92 (487)
79 1wwl_A Monocyte differentiatio 99.7 2.7E-17 9.4E-22 151.3 9.6 227 6-300 57-307 (312)
80 2ast_B S-phase kinase-associat 99.7 4.8E-18 1.7E-22 158.0 3.7 38 262-300 221-258 (336)
81 2ast_B S-phase kinase-associat 99.7 1.5E-17 5E-22 154.8 6.5 79 14-94 70-152 (336)
82 2p1m_B Transport inhibitor res 99.7 1.3E-18 4.4E-23 174.5 -2.1 132 237-384 395-538 (594)
83 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-18 5E-23 168.7 -1.8 344 14-385 3-406 (461)
84 1p9a_G Platelet glycoprotein I 99.7 7.3E-16 2.5E-20 140.1 16.2 199 10-275 6-207 (290)
85 1h6u_A Internalin H; cell adhe 99.7 4E-16 1.4E-20 143.2 13.8 208 20-341 25-232 (308)
86 2z62_A TOLL-like receptor 4, v 99.7 4.1E-16 1.4E-20 140.9 12.2 132 3-146 40-176 (276)
87 3rfs_A Internalin B, repeat mo 99.6 1.7E-15 6E-20 136.4 14.9 158 3-174 53-214 (272)
88 1p9a_G Platelet glycoprotein I 99.6 4.3E-15 1.5E-19 135.0 17.3 201 31-300 5-206 (290)
89 2ca6_A RAN GTPase-activating p 99.6 4.3E-17 1.5E-21 154.7 2.3 140 4-153 22-197 (386)
90 3m19_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 132.9 14.2 159 2-175 25-189 (251)
91 1h6t_A Internalin B; cell adhe 99.6 3.8E-15 1.3E-19 135.5 13.5 123 10-151 42-164 (291)
92 2v9t_B SLIT homolog 2 protein 99.6 3.3E-15 1.1E-19 130.1 11.7 138 2-154 22-163 (220)
93 4glp_A Monocyte differentiatio 99.6 1.5E-15 5.1E-20 139.6 10.0 221 15-300 65-305 (310)
94 4ezg_A Putative uncharacterize 99.6 5.4E-15 1.8E-19 126.5 12.5 149 10-174 40-190 (197)
95 3m19_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 126.3 15.8 123 14-151 14-139 (251)
96 1h6t_A Internalin B; cell adhe 99.6 1.6E-14 5.4E-19 131.4 13.5 153 3-175 58-210 (291)
97 4ezg_A Putative uncharacterize 99.6 1.4E-14 5E-19 123.8 11.8 135 2-154 55-192 (197)
98 2o6s_A Variable lymphocyte rec 99.6 1.7E-14 5.7E-19 124.5 12.2 134 3-151 19-156 (208)
99 1m9s_A Internalin B; cell inva 99.6 1.3E-14 4.5E-19 144.6 12.7 127 10-155 39-165 (605)
100 1xeu_A Internalin C; cellular 99.6 1.8E-14 6.1E-19 129.0 12.4 151 3-174 31-181 (263)
101 2v70_A SLIT-2, SLIT homolog 2 99.6 1.8E-14 6.1E-19 125.4 11.4 138 2-154 22-164 (220)
102 3e6j_A Variable lymphocyte rec 99.6 2E-14 6.9E-19 125.9 11.3 135 3-153 31-169 (229)
103 4glp_A Monocyte differentiatio 99.5 1.3E-14 4.4E-19 133.3 8.5 228 36-336 64-305 (310)
104 2ca6_A RAN GTPase-activating p 99.5 7.5E-16 2.6E-20 146.1 -0.5 239 7-298 53-339 (386)
105 1m9s_A Internalin B; cell inva 99.5 7.8E-14 2.7E-18 139.0 13.8 154 3-176 55-208 (605)
106 2ell_A Acidic leucine-rich nuc 99.5 4.2E-14 1.4E-18 117.6 9.0 136 12-161 22-165 (168)
107 3goz_A Leucine-rich repeat-con 99.5 3.1E-15 1.1E-19 140.5 1.1 60 239-300 196-264 (362)
108 2xot_A Amphoterin-induced prot 99.5 1.1E-13 3.9E-18 129.7 11.6 142 2-158 29-178 (361)
109 2ell_A Acidic leucine-rich nuc 99.5 1.3E-13 4.6E-18 114.5 9.8 124 5-138 40-165 (168)
110 3e6j_A Variable lymphocyte rec 99.5 6.4E-13 2.2E-17 116.3 13.4 145 16-175 21-169 (229)
111 1xeu_A Internalin C; cellular 99.5 4.7E-13 1.6E-17 119.7 12.8 133 2-156 52-185 (263)
112 1a9n_A U2A', U2A'; complex (nu 99.5 9E-14 3.1E-18 116.5 7.4 133 9-154 14-151 (176)
113 3goz_A Leucine-rich repeat-con 99.4 5.6E-15 1.9E-19 138.8 -0.8 240 7-300 15-295 (362)
114 1w8a_A SLIT protein; signaling 99.4 4E-13 1.4E-17 114.3 10.2 120 17-151 11-134 (192)
115 3cvr_A Invasion plasmid antige 99.4 8.8E-13 3E-17 130.2 13.6 111 15-154 60-171 (571)
116 2v9t_B SLIT homolog 2 protein 99.4 5.1E-13 1.7E-17 116.2 9.9 118 3-133 44-165 (220)
117 2je0_A Acidic leucine-rich nuc 99.4 1.3E-13 4.5E-18 112.1 5.6 125 12-150 15-147 (149)
118 2wfh_A SLIT homolog 2 protein 99.4 1.2E-12 4.1E-17 111.3 10.8 123 17-154 13-137 (193)
119 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.9E-17 110.8 11.3 117 2-133 21-139 (193)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.7E-17 114.1 10.5 118 3-133 44-166 (220)
121 2o6s_A Variable lymphocyte rec 99.4 2.7E-12 9.4E-17 110.5 11.9 131 3-152 40-174 (208)
122 2je0_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 108.2 6.6 113 5-128 33-148 (149)
123 1ds9_A Outer arm dynein; leuci 99.4 1.1E-14 3.7E-19 124.7 -4.3 133 3-149 37-180 (198)
124 3cvr_A Invasion plasmid antige 99.4 5.3E-12 1.8E-16 124.6 13.4 123 2-156 70-193 (571)
125 1w8a_A SLIT protein; signaling 99.3 2.4E-12 8.2E-17 109.4 9.2 117 2-133 19-139 (192)
126 2o6r_A Variable lymphocyte rec 99.3 4E-12 1.4E-16 106.5 10.3 124 16-154 9-135 (177)
127 2xot_A Amphoterin-induced prot 99.3 2.1E-12 7.3E-17 121.0 9.3 129 16-159 20-152 (361)
128 1dce_A Protein (RAB geranylger 99.3 3E-12 1E-16 126.8 10.7 119 15-149 442-566 (567)
129 3sb4_A Hypothetical leucine ri 99.3 4.6E-12 1.6E-16 117.2 7.7 101 262-383 225-327 (329)
130 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 9E-16 101.4 11.1 119 2-135 18-139 (177)
131 1a9n_A U2A', U2A'; complex (nu 99.2 7.2E-12 2.5E-16 104.8 6.6 119 3-132 31-152 (176)
132 1dce_A Protein (RAB geranylger 99.2 2E-11 7E-16 120.8 10.7 112 2-126 452-566 (567)
133 4b8c_D Glucose-repressible alc 99.2 5.5E-12 1.9E-16 128.8 6.6 114 6-134 216-330 (727)
134 2r9u_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 99.5 10.5 109 16-139 14-124 (174)
135 2r9u_A Variable lymphocyte rec 99.2 2.8E-11 9.4E-16 101.0 8.9 93 2-97 23-118 (174)
136 3g39_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 98.9 10.5 108 15-137 10-119 (170)
137 3g39_A Variable lymphocyte rec 99.2 4.5E-11 1.5E-15 99.3 8.9 93 2-97 20-115 (170)
138 4b8c_D Glucose-repressible alc 99.2 2E-11 6.7E-16 124.7 6.6 113 29-156 217-329 (727)
139 3sb4_A Hypothetical leucine ri 99.2 4.9E-10 1.7E-14 103.5 14.8 103 237-360 224-328 (329)
140 1ds9_A Outer arm dynein; leuci 99.1 1.6E-12 5.6E-17 111.0 -5.4 127 10-153 14-150 (198)
141 2ifg_A High affinity nerve gro 99.0 1.4E-09 4.6E-14 101.3 8.8 91 3-96 21-115 (347)
142 4fdw_A Leucine rich hypothetic 98.8 1.7E-07 5.6E-12 88.7 17.7 123 9-151 131-256 (401)
143 2ifg_A High affinity nerve gro 98.8 1.2E-08 4.2E-13 94.8 9.1 102 18-134 12-117 (347)
144 4fs7_A Uncharacterized protein 98.8 2.4E-07 8.1E-12 87.6 16.8 130 234-389 248-378 (394)
145 3e4g_A ATP synthase subunit S, 98.7 1.1E-08 3.9E-13 84.0 4.6 80 15-94 62-149 (176)
146 4fdw_A Leucine rich hypothetic 98.6 6.6E-07 2.3E-11 84.6 15.5 227 4-298 147-379 (401)
147 3e4g_A ATP synthase subunit S, 98.5 4.9E-08 1.7E-12 80.2 4.2 88 240-340 62-154 (176)
148 3un9_A NLR family member X1; l 98.5 1.8E-08 6E-13 94.5 0.6 132 14-154 72-222 (372)
149 4fs7_A Uncharacterized protein 98.5 4.8E-06 1.6E-10 78.6 17.4 123 234-382 271-393 (394)
150 3un9_A NLR family member X1; l 98.5 6E-09 2.1E-13 97.6 -3.0 132 14-155 101-251 (372)
151 1io0_A Tropomodulin; LRR prote 98.3 3.1E-07 1.1E-11 77.0 3.5 112 10-131 32-162 (185)
152 4gt6_A Cell surface protein; l 98.3 8.5E-05 2.9E-09 70.0 20.3 126 9-151 58-190 (394)
153 4gt6_A Cell surface protein; l 98.2 0.00013 4.6E-09 68.6 20.9 107 30-151 57-168 (394)
154 2ra8_A Uncharacterized protein 98.2 1.1E-06 3.9E-11 81.6 6.0 160 6-175 131-317 (362)
155 2ra8_A Uncharacterized protein 98.1 1.8E-06 6E-11 80.3 3.6 139 236-385 169-315 (362)
156 1io0_A Tropomodulin; LRR prote 97.9 3.1E-06 1.1E-10 70.8 2.2 116 30-154 30-162 (185)
157 3rw6_A Nuclear RNA export fact 97.9 1.1E-05 3.6E-10 71.3 4.7 86 33-126 167-257 (267)
158 4h09_A Hypothetical leucine ri 97.8 0.0035 1.2E-07 58.4 20.7 79 10-94 42-123 (379)
159 3rw6_A Nuclear RNA export fact 97.7 1.8E-05 6.2E-10 69.8 4.1 107 30-149 135-257 (267)
160 4h09_A Hypothetical leucine ri 97.5 0.0089 3E-07 55.6 19.4 309 18-385 21-341 (379)
161 3rfe_A Platelet glycoprotein I 96.2 0.0048 1.7E-07 47.8 4.6 54 40-96 12-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 95.0 0.02 6.7E-07 47.7 4.0 13 84-96 98-110 (197)
163 3rfe_A Platelet glycoprotein I 94.9 0.027 9.1E-07 43.6 4.4 51 17-69 11-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 94.3 0.017 5.9E-07 48.0 2.2 82 12-94 39-136 (197)
165 2lz0_A Uncharacterized protein 43.5 19 0.00065 25.8 3.2 36 55-92 16-51 (100)
166 2lz0_A Uncharacterized protein 34.8 49 0.0017 23.5 4.3 48 70-130 6-53 (100)
No 1
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.1e-26 Score=234.07 Aligned_cols=135 Identities=14% Similarity=0.040 Sum_probs=76.0
Q ss_pred cCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCC
Q 038576 236 SNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGD 314 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 314 (411)
..+++|+.|+++++......+ .....+++|+.|++++|...... + ..++.+++|++|++++|.-.......
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~------ 467 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF-D-GIFLGLTSLNTLKMAGNSFKDNTLSN------ 467 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC-T-TTTTTCTTCCEEECTTCEEGGGEECS------
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc-h-hhhcCCCCCCEEECCCCcCCCcchHH------
Confidence 445556666665543222211 12233566666666665433222 2 23456666777777666522211111
Q ss_pred CccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576 315 NYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV 387 (411)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~ 387 (411)
.+..+++|++|++++| .++.++ +... ..+++|++|++++|.-....|..+..+++|++|+++++
T Consensus 468 -----~~~~l~~L~~L~Ls~n-~l~~~~--~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 468 -----VFANTTNLTFLDLSKC-QLEQIS--WGVF-DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp -----CCTTCTTCCEEECTTS-CCCEEC--TTTT-TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred -----hhccCCCCCEEECCCC-cCCccC--hhhh-cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 2335788888888887 455552 1111 34688999999887433334666777888999999633
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=6.7e-26 Score=228.21 Aligned_cols=136 Identities=18% Similarity=0.130 Sum_probs=75.6
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNV 79 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~ 79 (411)
++++|..+.. ++++|++++|.++. +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.+..+++..
T Consensus 24 l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~ 100 (606)
T 3t6q_A 24 LNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA-NPLIFMAETA 100 (606)
T ss_dssp CSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCSEECTTT
T ss_pred cccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC-CcccccChhh
Confidence 4566655543 56666666666665 45666666666666666666644 44566666666666666 3444443333
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEec
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIG 153 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~ 153 (411)
++++++|++|++++|.+.. ..+..+.++++|++|++++|....++ +.+..+++|++|++..+
T Consensus 101 ~~~l~~L~~L~L~~n~i~~------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISS------------IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp TSSCTTCCEEECTTSCCSC------------GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred hcccccccEeeccccCccc------------CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 6666666666666666543 11234455555555555555544331 12223455555555443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=5.9e-27 Score=236.63 Aligned_cols=317 Identities=16% Similarity=0.213 Sum_probs=181.2
Q ss_pred CccccccccCcEEEeeCCcccc------------------chHHhc--CCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 29 MAIIGDLKKLVILALRGSDMEE------------------LAGEIG--QLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 29 ~~~l~~l~~L~~L~L~~~~l~~------------------lp~~i~--~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
|..++++++|++|++++|.++. +|..++ ++++|++|++++|.....+|.. ++++++|++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~ 277 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQL 277 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCE
Confidence 5567888899999999988887 888888 8999999999987767777866 888999999
Q ss_pred EEecccc-cccCccccccccccccchhhccCC------CCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEecCCc-cc
Q 038576 89 LYIGQSP-IQWGKVEGVDGERRNASLDELNNL------SKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIGDSR-EY 158 (411)
Q Consensus 89 L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~~~~-~~ 158 (411)
|++++|. +.+..+| ..++++ ++|++|++++|....+|. .++.+++|++|++..+... .+
T Consensus 278 L~Ls~n~~l~~~~lp-----------~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 278 INVACNRGISGEQLK-----------DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp EECTTCTTSCHHHHH-----------HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred EECcCCCCCccccch-----------HHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 9998887 4310122 444443 777777777777667776 6777777777777766655 55
Q ss_pred cCcCCccceeEEEecCCccccccccccccccc-chhcccCCCccc------------------------------ccc--
Q 038576 159 DAWDGISRISKLKLTNGANICLNEGHIMQLKR-IEDLTSGGDSEA------------------------------LYT-- 205 (411)
Q Consensus 159 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~------------------------------~~~-- 205 (411)
|.+....+++.|++..+....+.. .+..+.. ++.+........ .+.
T Consensus 347 p~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 347 PAFGSEIKLASLNLAYNQITEIPA-NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCCEEEEEESEEECCSSEEEECCT-TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhhCCCCCCCEEECCCCccccccH-hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 544445566666655432221111 1222222 222221111000 011
Q ss_pred -----ccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCC-CC-------CCCcCeEeecC
Q 038576 206 -----SFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSS-TS-------FQNLTTLTVWG 272 (411)
Q Consensus 206 -----~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~-------~~~L~~L~l~~ 272 (411)
.+++|++| ++.++. +..++......+++|++|+++++. +...+... .. +++|+.|++++
T Consensus 426 ~~~~~~~~~L~~L------~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 426 DPTPFKGINVSSI------NLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp CSSCCCCCCEEEE------ECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred ccccccCCCCCEE------ECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcC
Confidence 22344444 444433 223332222345666666666533 22222211 10 11666666666
Q ss_pred CCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCc------CCceeccCCC
Q 038576 273 CHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQ------SLTSFSCSGN 346 (411)
Q Consensus 273 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~~~~~~~ 346 (411)
|. ++.++.......+++|+.|+++++. ++.++. ....+++|+.|+++++. -...+| .
T Consensus 498 N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---~ 560 (636)
T 4eco_A 498 NK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWP---E 560 (636)
T ss_dssp SC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCC---T
T ss_pred Cc-CCccChhhhhccCCCcCEEECCCCC-CCCcCh------------hhhcCCCCCEEECCCCcccccCcccccCh---H
Confidence 54 3344321111256677777776654 444433 23347788888885432 122231 1
Q ss_pred cccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576 347 NCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV 387 (411)
Q Consensus 347 ~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~ 387 (411)
.. ..+++|++|++++| .+..+|..+. ++|+.|++++|
T Consensus 561 ~l-~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 561 GI-TLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp TG-GGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSC
T ss_pred HH-hcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCC
Confidence 11 34688888888886 4577887653 78888888633
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.5e-25 Score=225.64 Aligned_cols=95 Identities=20% Similarity=0.244 Sum_probs=70.4
Q ss_pred CCCC-ChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576 3 LLAL-PSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 3 l~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
++.+ |..|+++.+|++|++++|.++. +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.+..++..
T Consensus 45 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~l~~~ 123 (606)
T 3t6q_A 45 LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ-TGISSIDFI 123 (606)
T ss_dssp CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT-SCCSCGGGS
T ss_pred cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc-cCcccCCcc
Confidence 3444 4568888888888888888776 67788888888888888887754 55678888888888888 466666433
Q ss_pred cccCCCCccEEEeccccccc
Q 038576 79 VISSLSRLEELYIGQSPIQW 98 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~ 98 (411)
.++++++|++|++++|.+..
T Consensus 124 ~~~~l~~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 124 PLHNQKTLESLYLGSNHISS 143 (606)
T ss_dssp CCTTCTTCCEEECCSSCCCC
T ss_pred hhccCCcccEEECCCCcccc
Confidence 37777778888777776654
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.2e-25 Score=222.40 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=153.7
Q ss_pred CCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccc------------------
Q 038576 118 NLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANIC------------------ 179 (411)
Q Consensus 118 ~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~------------------ 179 (411)
.+++|+.+++.++....+| .+..+++|++|++..+....+|.+ ...+++.|++..+....
T Consensus 283 ~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 283 CLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp GGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred cCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence 3455555555555555555 555666777777776666666655 55566666655542111
Q ss_pred ----cc--cccccccccchhcccCCCcc----ccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCC
Q 038576 180 ----LN--EGHIMQLKRIEDLTSGGDSE----ALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMC 249 (411)
Q Consensus 180 ----~~--~~~~~~~~~l~~~~~~~~~~----~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c 249 (411)
.. ...+..++.++.+....... ..+..+++|++| .+.++.-....+......+++|++|++++|
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHL------DFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEE------ECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCee------ECCCCccCCccChhhhhccccCCEEECcCC
Confidence 00 11122233333333222211 134456777777 777765332223244568899999999997
Q ss_pred cCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCe
Q 038576 250 DNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKE 329 (411)
Q Consensus 250 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 329 (411)
......+.....+++|+.|++++|.......+ ..++.+++|+.|++++|. ++.+... .+..+++|++
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~ 501 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQISWG-----------VFDTLHRLQL 501 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSC-CCEECTT-----------TTTTCTTCCE
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCc-CCccChh-----------hhcccccCCE
Confidence 65544444455599999999999865442222 245789999999999986 5555432 2335899999
Q ss_pred eecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCC-CceEEEEecc
Q 038576 330 LNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTP-KLQKVQMSLV 387 (411)
Q Consensus 330 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~-~L~~l~l~~~ 387 (411)
|+++++ .+++++ +... ..+++|++|++++| +++.+|..+..++ +|++|++.+|
T Consensus 502 L~Ls~N-~l~~~~--~~~~-~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 502 LNMSHN-NLLFLD--SSHY-NQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp EECCSS-CCSCEE--GGGT-TTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSC
T ss_pred EECCCC-cCCCcC--HHHc-cCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCC
Confidence 999998 455551 1111 34699999999997 5889998877776 5999999643
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=2.6e-25 Score=217.42 Aligned_cols=304 Identities=21% Similarity=0.218 Sum_probs=231.4
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .++++|++++|.++. +..|.++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|..
T Consensus 22 ~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 98 (477)
T 2id5_A 22 RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLG 98 (477)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTT
T ss_pred CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcc
Confidence 4677887664 589999999999988 57899999999999999999866 67799999999999999 678889877
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCcc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSRE 157 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~ 157 (411)
.++++++|++|++++|.+.. ..+..+.++++|++|++++|....++ ..+..+++|++|++..+....
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 166 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVI------------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCE------------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred cccCCCCCCEEECCCCcccc------------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence 68899999999999998865 34467889999999999999866654 467788999999988554332
Q ss_pred ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576 158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN 237 (411)
Q Consensus 158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~ 237 (411)
++. ..+..+++|+.| .+.++. +..+....+..
T Consensus 167 ~~~-----------------------------------------~~l~~l~~L~~L------~l~~n~-i~~~~~~~~~~ 198 (477)
T 2id5_A 167 IPT-----------------------------------------EALSHLHGLIVL------RLRHLN-INAIRDYSFKR 198 (477)
T ss_dssp CCH-----------------------------------------HHHTTCTTCCEE------EEESCC-CCEECTTCSCS
T ss_pred cCh-----------------------------------------hHhcccCCCcEE------eCCCCc-CcEeChhhccc
Confidence 110 012356778888 887765 55555555678
Q ss_pred CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCcc
Q 038576 238 AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYA 317 (411)
Q Consensus 238 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 317 (411)
+++|++|+++++......++......+|+.|++++|. ++.+ +...+..+++|+.|+++++. ++.+...
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--------- 266 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEGS--------- 266 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSC-CHHHHTTCTTCCEEECCSSC-CCEECTT---------
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCCc-cccc-CHHHhcCccccCeeECCCCc-CCccChh---------
Confidence 8899999999887776655544446689999998874 5555 33456889999999999876 5555432
Q ss_pred CccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEecc
Q 038576 318 AQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMSLV 387 (411)
Q Consensus 318 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~~~ 387 (411)
.+..+++|++|+++++ .+..++ +... ..+++|++|+++++ .+..+|... ..+++|++|++.+|
T Consensus 267 --~~~~l~~L~~L~L~~n-~l~~~~--~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 267 --MLHELLRLQEIQLVGG-QLAVVE--PYAF-RGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp --SCTTCTTCCEEECCSS-CCSEEC--TTTB-TTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred --hccccccCCEEECCCC-ccceEC--HHHh-cCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 2345889999999986 566662 2222 45789999999986 677777643 47889999999544
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=7.8e-25 Score=213.35 Aligned_cols=316 Identities=17% Similarity=0.265 Sum_probs=162.4
Q ss_pred hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
+..+.+|++|++++|.++. ++ ++++++|++|++++|.++.++. ++++++|++|++++ +.++.++. ++++++|++
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~ 138 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN-NQITDIDP--LKNLTNLNR 138 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCSE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC-CCCCCChH--HcCCCCCCE
Confidence 4555666666666665555 32 5556666666666665555544 55666666666665 34555543 555666666
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCcccee
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRIS 168 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~ 168 (411)
|++++|.+.. ...+.++++|+++++.. ....++ .+..+++|+.|++..+.....+.+....+++
T Consensus 139 L~l~~n~l~~--------------~~~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 202 (466)
T 1o6v_A 139 LELSSNTISD--------------ISALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDISVLAKLTNLE 202 (466)
T ss_dssp EEEEEEEECC--------------CGGGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred EECCCCccCC--------------ChhhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCChhhccCCCCC
Confidence 6666555432 12244444555554432 222221 1444555555555444443333333344455
Q ss_pred EEEecCCcccccccccccccccchhcccC---CCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEE
Q 038576 169 KLKLTNGANICLNEGHIMQLKRIEDLTSG---GDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLS 245 (411)
Q Consensus 169 ~L~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~ 245 (411)
.|++..+....... +..++.++.+... +.....+..+++|++| ++.++. +..... ...+++|++|+
T Consensus 203 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L------~l~~n~-l~~~~~--~~~l~~L~~L~ 271 (466)
T 1o6v_A 203 SLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDL------DLANNQ-ISNLAP--LSGLTKLTELK 271 (466)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE------ECCSSC-CCCCGG--GTTCTTCSEEE
T ss_pred EEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEE------ECCCCc-cccchh--hhcCCCCCEEE
Confidence 55544332211110 2222222222211 1111123445566666 666554 333222 34566677777
Q ss_pred ecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccC
Q 038576 246 IFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFS 325 (411)
Q Consensus 246 l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (411)
++++ .+...++.. .+++|+.|++++|. ++.+++ +..+++|+.|++++|. +..+.. ...++
T Consensus 272 l~~n-~l~~~~~~~-~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~ 331 (466)
T 1o6v_A 272 LGAN-QISNISPLA-GLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDISP-------------VSSLT 331 (466)
T ss_dssp CCSS-CCCCCGGGT-TCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCGG-------------GGGCT
T ss_pred CCCC-ccCcccccc-CCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCchh-------------hccCc
Confidence 7664 333333322 36777777776654 333322 4567777777777764 433322 22477
Q ss_pred CCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576 326 ELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 326 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~ 385 (411)
+|+.|++++| .+++++ . . ..+++|++|++.+|. +..++. +..+++|++|++.
T Consensus 332 ~L~~L~l~~n-~l~~~~-~---l-~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVS-S---L-ANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLN 383 (466)
T ss_dssp TCCEEECCSS-CCCCCG-G---G-TTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECC
T ss_pred cCCEeECCCC-ccCCch-h---h-ccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEecc
Confidence 8888888876 455552 1 1 346888888888764 444443 5567888888885
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2e-25 Score=230.10 Aligned_cols=321 Identities=14% Similarity=0.164 Sum_probs=237.1
Q ss_pred CChhhh--ccccCcEEEecCCcCCC--CccccccccCcEEEeeCCc-ccc--chHHhcCCC-------CCCEEecCCCCC
Q 038576 6 LPSSLG--LLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSD-MEE--LAGEIGQLT-------QLRLLNLSKCFE 71 (411)
Q Consensus 6 lp~~l~--~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~-l~~--lp~~i~~l~-------~L~~L~L~~c~~ 71 (411)
+|+.++ ++.+|++|++++|.+.. |..++++++|++|++++|+ ++. +|..+++++ +|++|++++ +.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-Cc
Confidence 898877 99999999999999665 8899999999999999998 884 888777665 999999999 57
Q ss_pred ccccCc--ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCC-CcEE
Q 038576 72 LKVIPP--NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKM-LQRY 148 (411)
Q Consensus 72 ~~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L 148 (411)
+..+|. . ++++++|++|++++|.+.. .+ .++++++|+.|++++|.+..+|..+..+++ |+.|
T Consensus 560 L~~ip~~~~-l~~L~~L~~L~Ls~N~l~~-------------lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 560 LEEFPASAS-LQKMVKLGLLDCVHNKVRH-------------LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGL 624 (876)
T ss_dssp CCBCCCHHH-HTTCTTCCEEECTTSCCCB-------------CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEE
T ss_pred CCccCChhh-hhcCCCCCEEECCCCCccc-------------ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEE
Confidence 779997 5 9999999999999998742 33 788999999999999998899999999999 9999
Q ss_pred EEEecCCccccCcCC-c--cceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccc
Q 038576 149 RILIGDSREYDAWDG-I--SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRR 225 (411)
Q Consensus 149 ~i~~~~~~~~~~~~~-~--~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~ 225 (411)
++..+....+|.+.. . .+++.|+++.+..... + +. +..... ....++|+.| ++.++.
T Consensus 625 ~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~----i---p~---l~~~l~----~~~~~~L~~L------~Ls~N~ 684 (876)
T 4ecn_A 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE----G---RN---ISCSMD----DYKGINASTV------TLSYNE 684 (876)
T ss_dssp ECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT----S---SS---CSSCTT----TCCCCCEEEE------ECCSSC
T ss_pred ECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc----c---cc---chhhhc----cccCCCcCEE------EccCCc
Confidence 999888877777655 2 3488888866432210 0 00 000000 0134578999 888876
Q ss_pred cccccccccccCCCCCcEEEecCCcCCccCCCCCC--------CCCCcCeEeecCCCCCccccchHhhhccccccEEeEc
Q 038576 226 ELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSST--------SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIK 297 (411)
Q Consensus 226 ~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~--------~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 297 (411)
+..++......+++|+.|+++++ .+...+.... .+++|+.|++++|. ++.++.......+++|+.|+++
T Consensus 685 -L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 685 -IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp -CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECC
T ss_pred -CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeC
Confidence 55555544457889999999985 3434333221 12389999998884 5565432111378999999999
Q ss_pred ccccccccccccCCCCCCccCccccccCCCCeeecCCCc-----C-CceeccCCCcccccCCCcceEeecCCCCCccccC
Q 038576 298 VCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQ-----S-LTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSE 371 (411)
Q Consensus 298 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~-----~-l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~ 371 (411)
+|. +..++.. ...+++|+.|++++++ + ...+| ... ..+++|++|++++|. +..+|.
T Consensus 762 ~N~-L~~lp~~------------l~~L~~L~~L~Ls~N~~ls~N~l~~~ip---~~l-~~L~~L~~L~Ls~N~-L~~Ip~ 823 (876)
T 4ecn_A 762 YNC-FSSFPTQ------------PLNSSQLKAFGIRHQRDAEGNRILRQWP---TGI-TTCPSLIQLQIGSND-IRKVDE 823 (876)
T ss_dssp SSC-CSSCCCG------------GGGCTTCCEEECCCCBCTTCCBCCCCCC---TTG-GGCSSCCEEECCSSC-CCBCCS
T ss_pred CCC-CCccchh------------hhcCCCCCEEECCCCCCcccccccccCh---HHH-hcCCCCCEEECCCCC-CCccCH
Confidence 876 5555443 3358999999998743 2 22231 122 457999999999974 588988
Q ss_pred CCCCCCCceEEEEe
Q 038576 372 GELSTPKLQKVQMS 385 (411)
Q Consensus 372 ~~~~~~~L~~l~l~ 385 (411)
.+ .++|+.|+++
T Consensus 824 ~l--~~~L~~LdLs 835 (876)
T 4ecn_A 824 KL--TPQLYILDIA 835 (876)
T ss_dssp CC--CSSSCEEECC
T ss_pred hh--cCCCCEEECC
Confidence 75 3799999997
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.6e-26 Score=228.13 Aligned_cols=319 Identities=12% Similarity=0.139 Sum_probs=239.3
Q ss_pred CChhhh--ccccCcEEEecCCcCCC--CccccccccCcEEEeeCCc-ccc--chHHhcCC------CCCCEEecCCCCCc
Q 038576 6 LPSSLG--LLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSD-MEE--LAGEIGQL------TQLRLLNLSKCFEL 72 (411)
Q Consensus 6 lp~~l~--~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~-l~~--lp~~i~~l------~~L~~L~L~~c~~~ 72 (411)
+|+.++ ++.+|++|++++|.+.. |..++++++|++|++++|+ ++. +|..++++ ++|++|++++ +.+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcC
Confidence 899988 99999999999999766 8899999999999999998 884 89988887 9999999999 577
Q ss_pred cccCc--ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCC-CcEEE
Q 038576 73 KVIPP--NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKM-LQRYR 149 (411)
Q Consensus 73 ~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~-L~~L~ 149 (411)
+.+|. . ++++++|++|++++|.+.+ ..+ .+.++++|++|++++|....+|..+..+++ |++|+
T Consensus 318 ~~ip~~~~-l~~l~~L~~L~L~~N~l~g------------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 318 KTFPVETS-LQKMKKLGMLECLYNQLEG------------KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp SSCCCHHH-HTTCTTCCEEECCSCCCEE------------ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CccCchhh-hccCCCCCEEeCcCCcCcc------------chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 79997 5 9999999999999998864 344 788889999999999998899999999999 99999
Q ss_pred EEecCCccccCcCC---ccceeEEEecCCccccccccccc-------ccccchhcccCCCcc-----ccccccchhhhch
Q 038576 150 ILIGDSREYDAWDG---ISRISKLKLTNGANICLNEGHIM-------QLKRIEDLTSGGDSE-----ALYTSFKNVENGM 214 (411)
Q Consensus 150 i~~~~~~~~~~~~~---~~~l~~L~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~-----~~~~~~~~L~~L~ 214 (411)
++.+....+|++.. ..+++.|++..+.........+. .+..++.+....... ..+..+++|++|
T Consensus 384 Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L- 462 (636)
T 4eco_A 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI- 462 (636)
T ss_dssp CCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEE-
T ss_pred ccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEE-
Confidence 99888877777655 23788998877544332222222 333444443222211 123457899999
Q ss_pred HhhhccccccccccccccccccC-------CCCCcEEEecCCcCCccCCCCCC--CCCCcCeEeecCCCCCccccchHhh
Q 038576 215 EAMMRGINHRRELKQIFKQESSN-------AKDLEKLSIFMCDNLTHLVPSST--SFQNLTTLTVWGCHGMINVLTSSTA 285 (411)
Q Consensus 215 ~~~~~~l~~~~~l~~~~~~~~~~-------~~~L~~L~l~~c~~l~~~~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~ 285 (411)
++.++. +..++...... +++|+.|+++++. +...+.... .+++|+.|++++|... .++. .+
T Consensus 463 -----~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~--~~ 532 (636)
T 4eco_A 463 -----NLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNSFS-KFPT--QP 532 (636)
T ss_dssp -----ECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSCCS-SCCC--GG
T ss_pred -----ECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCCCC-CcCh--hh
Confidence 999876 45555433322 2399999999854 445554433 5899999999998644 4543 35
Q ss_pred hccccccEEeEccccc------ccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEe
Q 038576 286 RSLVRLRQMTIKVCVM------ITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLV 359 (411)
Q Consensus 286 ~~l~~L~~L~l~~c~~------l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~ 359 (411)
..+++|+.|+++++.. ...++. .+..+++|++|+++++. ++.+|.. . +++|++|+
T Consensus 533 ~~l~~L~~L~Ls~N~~ls~N~l~~~~p~------------~l~~l~~L~~L~Ls~N~-l~~ip~~---~---~~~L~~L~ 593 (636)
T 4eco_A 533 LNSSTLKGFGIRNQRDAQGNRTLREWPE------------GITLCPSLTQLQIGSND-IRKVNEK---I---TPNISVLD 593 (636)
T ss_dssp GGCSSCCEEECCSCBCTTCCBCCCCCCT------------TGGGCSSCCEEECCSSC-CCBCCSC---C---CTTCCEEE
T ss_pred hcCCCCCEEECCCCcccccCcccccChH------------HHhcCCCCCEEECCCCc-CCccCHh---H---hCcCCEEE
Confidence 6899999999976542 222222 44569999999999975 5777322 2 38999999
Q ss_pred ecCCCCCcccc
Q 038576 360 VNRCPNMKIFS 370 (411)
Q Consensus 360 i~~C~~l~~~p 370 (411)
+++++ +..+.
T Consensus 594 Ls~N~-l~~~~ 603 (636)
T 4eco_A 594 IKDNP-NISID 603 (636)
T ss_dssp CCSCT-TCEEE
T ss_pred CcCCC-Ccccc
Confidence 99975 44443
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=2.9e-25 Score=220.97 Aligned_cols=140 Identities=21% Similarity=0.216 Sum_probs=93.0
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|++|++++|.++. +..++++++|++|++++|.++.++ ..++++++|++|++++ +.+..++..
T Consensus 16 ~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~ 92 (549)
T 2z81_A 16 SFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD-NHLSSLSSS 92 (549)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCSCCHH
T ss_pred ccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC-CccCccCHH
Confidence 3566776554 577888888877776 566777778888888887777554 4577777888888877 466666665
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCC-cccccCCCCcEEEEEecCC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLP-RDLSFFKMLQRYRILIGDS 155 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~l~~~~~L~~L~i~~~~~ 155 (411)
.++++++|++|++++|.+.... .+..++++++|++|++++|. ...+| ..+..+++|++|++..+..
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~-----------~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLG-----------VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSC-----------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred HhccCCCCcEEECCCCcccccc-----------hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 5777778888888777765311 12455666666666666665 44444 3455666666666665543
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=222.77 Aligned_cols=154 Identities=16% Similarity=0.101 Sum_probs=96.6
Q ss_pred ccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHh
Q 038576 206 SFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSST 284 (411)
Q Consensus 206 ~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 284 (411)
.+++|++| ++.++. +..++.. ...+++|++|+++++......+ .....+++|+.|++++|...... + ..
T Consensus 371 ~~~~L~~L------~l~~n~-l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~ 440 (570)
T 2z63_A 371 GTTSLKYL------DLSFNG-VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-N-GI 440 (570)
T ss_dssp TCSCCCEE------ECCSCS-EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-T-TT
T ss_pred ccCccCEE------ECCCCc-ccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-h-hh
Confidence 34455555 555543 2233222 3566777777777644322212 12334788888888887543332 2 24
Q ss_pred hhccccccEEeEccccccc-ccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCC
Q 038576 285 ARSLVRLRQMTIKVCVMIT-EIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRC 363 (411)
Q Consensus 285 ~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C 363 (411)
+..+++|+.|++++|.-.. .++. .+..+++|++|++++| .+++++ +... ..+++|++|++++|
T Consensus 441 ~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L~l~~n-~l~~~~--~~~~-~~l~~L~~L~l~~n 504 (570)
T 2z63_A 441 FNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQC-QLEQLS--PTAF-NSLSSLQVLNMASN 504 (570)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTS-CCCEEC--TTTT-TTCTTCCEEECCSS
T ss_pred hhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEEECCCC-ccccCC--hhhh-hcccCCCEEeCCCC
Confidence 5678888888888876321 2332 3345899999999998 466661 1121 34699999999997
Q ss_pred CCCccccCC-CCCCCCceEEEEec
Q 038576 364 PNMKIFSEG-ELSTPKLQKVQMSL 386 (411)
Q Consensus 364 ~~l~~~p~~-~~~~~~L~~l~l~~ 386 (411)
++..+|.. +..+++|++|++.+
T Consensus 505 -~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 505 -QLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCS
T ss_pred -cCCCCCHHHhhcccCCcEEEecC
Confidence 57776653 56889999999964
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=8.8e-25 Score=204.72 Aligned_cols=302 Identities=19% Similarity=0.230 Sum_probs=230.7
Q ss_pred hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
+.++.+|++|+++++.+...+.++.+++|++|++++|.++.++. +.++++|++|++++ +.++.++. +..+++|++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~-n~i~~~~~--~~~l~~L~~L 115 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGT-NKITDISA--LQNLTNLREL 115 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCSEE
T ss_pred chhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccC-CcccCchH--HcCCCcCCEE
Confidence 56789999999999999885568999999999999999998887 99999999999999 47888764 8999999999
Q ss_pred EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeE
Q 038576 90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISK 169 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~ 169 (411)
++++|.+.. ...+..+++|+++++++|.....+..+..+++|++|++..+.....+.+....+++.
T Consensus 116 ~l~~n~i~~--------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 116 YLNEDNISD--------------ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYS 181 (347)
T ss_dssp ECTTSCCCC--------------CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred ECcCCcccC--------------chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCE
Confidence 999998753 123889999999999999755555668899999999998777666666555777888
Q ss_pred EEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCC
Q 038576 170 LKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMC 249 (411)
Q Consensus 170 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c 249 (411)
|++..+.... .. .+..+++|+.| .+.++. +..+.. ...+++|++|++++|
T Consensus 182 L~l~~n~l~~--------~~-------------~~~~l~~L~~L------~l~~n~-l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 182 LSLNYNQIED--------IS-------------PLASLTSLHYF------TAYVNQ-ITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp EECTTSCCCC--------CG-------------GGGGCTTCCEE------ECCSSC-CCCCGG--GGGCTTCCEEECCSS
T ss_pred EEccCCcccc--------cc-------------cccCCCcccee------ecccCC-CCCCch--hhcCCcCCEEEccCC
Confidence 8776542111 10 12356788888 888765 444433 457899999999986
Q ss_pred cCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCe
Q 038576 250 DNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKE 329 (411)
Q Consensus 250 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 329 (411)
. +....+ ...+++|+.|++++|. ++.+ .....+++|++|++++|. ++++. ....+++|+.
T Consensus 232 ~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~ 291 (347)
T 4fmz_A 232 K-ITDLSP-LANLSQLTWLEIGTNQ-ISDI---NAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNS 291 (347)
T ss_dssp C-CCCCGG-GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSE
T ss_pred c-cCCCcc-hhcCCCCCEEECCCCc-cCCC---hhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCE
Confidence 4 444444 3348999999999884 4544 246789999999999985 55552 2335899999
Q ss_pred eecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576 330 LNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 330 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~ 385 (411)
|++++|. +...+. ... ..+++|++|++++|+ +..++. ...+++|++|+++
T Consensus 292 L~L~~n~-l~~~~~--~~l-~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 292 LFLNNNQ-LGNEDM--EVI-GGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFA 341 (347)
T ss_dssp EECCSSC-CCGGGH--HHH-HTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSS
T ss_pred EECcCCc-CCCcCh--hHh-hccccCCEEEccCCc-cccccC-hhhhhccceeehh
Confidence 9999985 544411 111 347999999999986 666655 6678999999997
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=215.56 Aligned_cols=135 Identities=20% Similarity=0.245 Sum_probs=105.9
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|++|++++|.++. +..+.++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|..
T Consensus 11 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~ 87 (520)
T 2z7x_B 11 GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH-NKLVKISCH 87 (520)
T ss_dssp CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS-SCCCEEECC
T ss_pred Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC-CceeecCcc
Confidence 4677887766 789999999999887 36788899999999999998866 66788999999999999 578888864
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCC--cEEEEEecCC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKML--QRYRILIGDS 155 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L~i~~~~~ 155 (411)
.+++|++|++++|.+.... .+..++++++|++|++++|.... ..+..+++| +.|++..+..
T Consensus 88 ---~l~~L~~L~L~~N~l~~~~-----------~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 ---PTVNLKHLDLSFNAFDALP-----------ICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp ---CCCCCSEEECCSSCCSSCC-----------CCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ---ccCCccEEeccCCcccccc-----------chhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 8899999999999876411 23678888888888888887554 345566666 7777776544
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=7.7e-25 Score=208.49 Aligned_cols=303 Identities=15% Similarity=0.186 Sum_probs=216.1
Q ss_pred ccccCcEEEecCCcCCC-Cc-cccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 12 LLQNLQTLSLDDCELGD-MA-IIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~-~~-~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
.+.++++|+++++.++. |. .+..+++|++|++++|.++.++. .++++++|++|++++ +.++.++...++++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCE
Confidence 46788899998888887 54 36788889999999988887664 688889999999988 5677776666788899999
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccce
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISRI 167 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l 167 (411)
|++++|.+.. ++ ...+.++++|++|++++|....++. .+..+++|++|++..+.....+ .....++
T Consensus 122 L~L~~n~l~~--l~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L 188 (390)
T 3o6n_A 122 LVLERNDLSS--LP----------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSL 188 (390)
T ss_dssp EECCSSCCCC--CC----------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTC
T ss_pred EECCCCccCc--CC----------HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-ccccccc
Confidence 9998887753 22 2346788889999998888766654 4778888888888766544331 2224455
Q ss_pred eEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576 168 SKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF 247 (411)
Q Consensus 168 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~ 247 (411)
+.+++..+.. ......++|++| ++.++. +..++. ..+++|+.|+++
T Consensus 189 ~~L~l~~n~l------------------------~~~~~~~~L~~L------~l~~n~-l~~~~~---~~~~~L~~L~l~ 234 (390)
T 3o6n_A 189 FHANVSYNLL------------------------STLAIPIAVEEL------DASHNS-INVVRG---PVNVELTILKLQ 234 (390)
T ss_dssp SEEECCSSCC------------------------SEEECCSSCSEE------ECCSSC-CCEEEC---CCCSSCCEEECC
T ss_pred ceeecccccc------------------------cccCCCCcceEE------ECCCCe-eeeccc---cccccccEEECC
Confidence 5555433211 111234578888 888765 444433 356899999999
Q ss_pred CCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576 248 MCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL 327 (411)
Q Consensus 248 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 327 (411)
++. +.+.... ..+++|+.|++++|. ++.+.+ ..+..+++|+.|+++++. ++.++... ..+++|
T Consensus 235 ~n~-l~~~~~l-~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~------------~~l~~L 297 (390)
T 3o6n_A 235 HNN-LTDTAWL-LNYPGLVEVDLSYNE-LEKIMY-HPFVKMQRLERLYISNNR-LVALNLYG------------QPIPTL 297 (390)
T ss_dssp SSC-CCCCGGG-GGCTTCSEEECCSSC-CCEEES-GGGTTCSSCCEEECCSSC-CCEEECSS------------SCCTTC
T ss_pred CCC-CcccHHH-cCCCCccEEECCCCc-CCCcCh-hHccccccCCEEECCCCc-CcccCccc------------CCCCCC
Confidence 854 4444333 348999999999885 444433 346789999999999976 66665433 248999
Q ss_pred CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEecc
Q 038576 328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLV 387 (411)
Q Consensus 328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~ 387 (411)
++|+++++ .++.+|... ..+++|++|++.+| .+..++ ...+++|++|++.+|
T Consensus 298 ~~L~L~~n-~l~~~~~~~----~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 298 KVLDLSHN-HLLHVERNQ----PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CEEECCSS-CCCCCGGGH----HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSS
T ss_pred CEEECCCC-cceecCccc----cccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCC
Confidence 99999997 577763222 34699999999996 477776 456899999999643
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=1.6e-24 Score=210.62 Aligned_cols=345 Identities=15% Similarity=0.162 Sum_probs=232.4
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccc-cc-hHHhcCCCCCCEEecCCCCCccccCc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDME-EL-AGEIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~-~l-p~~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
.++.+|. +. .+|++|++++|.++. +..++++++|++|++++|.+. .+ |..++++++|++|++++ +.+..++.
T Consensus 21 ~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~ 96 (455)
T 3v47_A 21 GLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLET 96 (455)
T ss_dssp CCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT-CTTCEECT
T ss_pred CcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC-CccCccCh
Confidence 4667776 32 789999999999988 788999999999999999886 55 45689999999999999 46776644
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhh--ccCCCCCCEEEEeeccCCcC-Ccc-cccCCCCcEEEEEec
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE--LNNLSKLTSLEILIQDEKTL-PRD-LSFFKMLQRYRILIG 153 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~-~~~-l~~~~~L~~L~i~~~ 153 (411)
..++++++|++|++++|.+.. ..+.. +.++++|++|++++|....+ |.. +..+++|++|++..+
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDG------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBT------------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred hhccCcccCCEEeCCCCCCCc------------cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 449999999999999998864 22233 88999999999999997776 444 788999999999876
Q ss_pred CCccccC-cC-C--ccceeEEEecCCcccccccccc--------cccccchhcccCCCccc-----cc---cccchhhhc
Q 038576 154 DSREYDA-WD-G--ISRISKLKLTNGANICLNEGHI--------MQLKRIEDLTSGGDSEA-----LY---TSFKNVENG 213 (411)
Q Consensus 154 ~~~~~~~-~~-~--~~~l~~L~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~-----~~---~~~~~L~~L 213 (411)
....... .. . ..+++.|++..+.........+ ..+..++.++....... .+ ....+|+.|
T Consensus 165 ~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 6443321 11 1 2567777765543332221111 11122222222111110 00 011445555
Q ss_pred hHhhhcccccccccccc---------ccccc--cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccch
Q 038576 214 MEAMMRGINHRRELKQI---------FKQES--SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTS 282 (411)
Q Consensus 214 ~~~~~~~l~~~~~l~~~---------~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 282 (411)
.+.++...... ..... ...++|+.|+++++......+.....+++|+.|++++|.. +.+++
T Consensus 245 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~- 316 (455)
T 3v47_A 245 ------ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDD- 316 (455)
T ss_dssp ------ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC-CEECT-
T ss_pred ------eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc-cccCh-
Confidence 55444221110 00000 1246899999998654444444445589999999988864 44433
Q ss_pred HhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecC
Q 038576 283 STARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNR 362 (411)
Q Consensus 283 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~ 362 (411)
..+..+++|++|++++|. ++.+... .+..+++|++|+++++ .++.++ +... ..+++|++|++.+
T Consensus 317 ~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~~~--~~~~-~~l~~L~~L~L~~ 380 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNF-LGSIDSR-----------MFENLDKLEVLDLSYN-HIRALG--DQSF-LGLPNLKELALDT 380 (455)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECGG-----------GGTTCTTCCEEECCSS-CCCEEC--TTTT-TTCTTCCEEECCS
T ss_pred hHhcCcccCCEEECCCCc-cCCcChh-----------HhcCcccCCEEECCCC-cccccC--hhhc-cccccccEEECCC
Confidence 245789999999999986 5555432 2335899999999997 566662 2222 3479999999999
Q ss_pred CCCCccccCCC-CCCCCceEEEEecc
Q 038576 363 CPNMKIFSEGE-LSTPKLQKVQMSLV 387 (411)
Q Consensus 363 C~~l~~~p~~~-~~~~~L~~l~l~~~ 387 (411)
+ +++.+|... ..+++|++|++++|
T Consensus 381 N-~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 381 N-QLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp S-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-ccccCCHhHhccCCcccEEEccCC
Confidence 5 688888754 57899999999643
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.4e-24 Score=216.03 Aligned_cols=352 Identities=18% Similarity=0.193 Sum_probs=207.3
Q ss_pred CCCC-ChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCcccc--C
Q 038576 3 LLAL-PSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVI--P 76 (411)
Q Consensus 3 l~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~--~ 76 (411)
++.+ |..|+++.+|++|++++|.++. +..|+++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+ |
T Consensus 38 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~ 116 (549)
T 2z81_A 38 ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVT 116 (549)
T ss_dssp CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT-CCCSSSCSS
T ss_pred cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC-Ccccccchh
Confidence 3444 5679999999999999999988 57899999999999999999977654 99999999999999 466643 4
Q ss_pred cccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc-CCcccccCCCCcEEEEEecCC
Q 038576 77 PNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT-LPRDLSFFKMLQRYRILIGDS 155 (411)
Q Consensus 77 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~~~~L~~L~i~~~~~ 155 (411)
.. ++++++|++|++++|.... .++ ...+.++++|++|++++|.... .|..++.+++|++|++..+..
T Consensus 117 ~~-~~~l~~L~~L~L~~n~~~~-~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 117 SL-FPNLTNLQTLRIGNVETFS-EIR----------RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CS-CTTCTTCCEEEEEESSSCC-EEC----------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred hh-hhccCCccEEECCCCcccc-ccC----------HhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 44 8899999999999987433 222 2467777788888888777443 445555555555555443332
Q ss_pred ccccCcC--CccceeEEEecCCccccc------------------------------------------cccc-------
Q 038576 156 REYDAWD--GISRISKLKLTNGANICL------------------------------------------NEGH------- 184 (411)
Q Consensus 156 ~~~~~~~--~~~~l~~L~~~~~~~~~~------------------------------------------~~~~------- 184 (411)
...+++. ...+++.|++.++.-... ....
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~ 264 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLN 264 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEE
T ss_pred cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccc
Confidence 2222211 122233333222110000 0000
Q ss_pred ------------ccccccch-----------------------------hcc---cCCC--ccccccccchhhhchHhhh
Q 038576 185 ------------IMQLKRIE-----------------------------DLT---SGGD--SEALYTSFKNVENGMEAMM 218 (411)
Q Consensus 185 ------------~~~~~~l~-----------------------------~~~---~~~~--~~~~~~~~~~L~~L~~~~~ 218 (411)
+..+..+. .+. ..+. +....+.+++|++|
T Consensus 265 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L----- 339 (549)
T 2z81_A 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFL----- 339 (549)
T ss_dssp CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEE-----
T ss_pred ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEE-----
Confidence 00000000 000 0000 00011356777888
Q ss_pred ccccccccccccc--cccccCCCCCcEEEecCCcCCccCCC---CCCCCCCcCeEeecCCCCCccccchHhhhccccccE
Q 038576 219 RGINHRRELKQIF--KQESSNAKDLEKLSIFMCDNLTHLVP---SSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQ 293 (411)
Q Consensus 219 ~~l~~~~~l~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 293 (411)
++.++.-...++ ......+++|+.|+++++. +...+. ....+++|+.|++++| .++.++. ....+++|++
T Consensus 340 -~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~L~~ 414 (549)
T 2z81_A 340 -DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD--SCQWPEKMRF 414 (549)
T ss_dssp -ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--CCCCCTTCCE
T ss_pred -EccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCCh--hhcccccccE
Confidence 777766333222 1123567777777777743 322211 1223777777777776 3444432 2355677777
Q ss_pred EeEcccccccccccccCCCCCCc-------cCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCC
Q 038576 294 MTIKVCVMITEIVADEDDEGDNY-------AAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNM 366 (411)
Q Consensus 294 L~l~~c~~l~~~~~~~~~~~~~~-------~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l 366 (411)
|++++|. ++.++..... .+.. .......+++|++|+++++ +++.+|. . ..+++|++|+++++ .+
T Consensus 415 L~Ls~N~-l~~l~~~~~~-~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~-~----~~l~~L~~L~Ls~N-~l 485 (549)
T 2z81_A 415 LNLSSTG-IRVVKTCIPQ-TLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPD-A----SLFPVLLVMKISRN-QL 485 (549)
T ss_dssp EECTTSC-CSCCCTTSCT-TCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCC-G----GGCTTCCEEECCSS-CC
T ss_pred EECCCCC-cccccchhcC-CceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCC-c----ccCccCCEEecCCC-cc
Confidence 7777665 4433221100 0000 0001125788999999986 5777742 1 23689999999986 57
Q ss_pred ccccCC-CCCCCCceEEEEec
Q 038576 367 KIFSEG-ELSTPKLQKVQMSL 386 (411)
Q Consensus 367 ~~~p~~-~~~~~~L~~l~l~~ 386 (411)
..++.. +..+++|+.|++++
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCS
T ss_pred CCcCHHHHhcCcccCEEEecC
Confidence 766654 56789999999963
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=6.9e-24 Score=216.41 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=118.9
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++++|..+. .++++|++++|.++. +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.+..+|..
T Consensus 15 ~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~ 91 (680)
T 1ziw_A 15 KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDK 91 (680)
T ss_dssp CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS-SCCCCCCTT
T ss_pred CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC-CccCccChh
Confidence 4677887665 688899999888887 45688888999999998888855 56688888999999988 578888876
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecCCcc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGDSRE 157 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~ 157 (411)
.++++++|++|++++|.+.. ..+..++++++|++|++++|..... +..++.+++|++|++..+....
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQK------------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCC------------CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred hhccCCCCCEEECCCCccCc------------cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 68888999999998887754 2235678888888888888875544 4456778888888887665443
Q ss_pred ccCc----CCccceeEEEecCCc
Q 038576 158 YDAW----DGISRISKLKLTNGA 176 (411)
Q Consensus 158 ~~~~----~~~~~l~~L~~~~~~ 176 (411)
.+.. ....+++.|++..+.
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCC
T ss_pred cCHHHhhccccccccEEECCCCc
Confidence 3321 124677777776653
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.6e-25 Score=229.32 Aligned_cols=327 Identities=14% Similarity=0.173 Sum_probs=188.6
Q ss_pred CccccccccCcEEEeeCCcccc------------------chHHhc--CCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 29 MAIIGDLKKLVILALRGSDMEE------------------LAGEIG--QLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 29 ~~~l~~l~~L~~L~L~~~~l~~------------------lp~~i~--~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
|..++++++|++|++++|.++. +|..++ ++++|++|++++|.....+|.. ++++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCE
Confidence 4567788899999999988887 888877 8999999999887777788866 888999999
Q ss_pred EEecccc-cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEecCCccccCcCCcc
Q 038576 89 LYIGQSP-IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIGDSREYDAWDGIS 165 (411)
Q Consensus 89 L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~~~~~~~~~~~~~ 165 (411)
|++++|. +....+|...+ .....+..+++|++|++++|.+..+|. .++.+++|+.|+++.+....+|.+....
T Consensus 520 L~Ls~N~~lsg~~iP~~i~----~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~ 595 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWT----RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNV 595 (876)
T ss_dssp EECTTCTTSCHHHHHHHHH----HHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTS
T ss_pred EECcCCCCcccccchHHHH----hhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCC
Confidence 9998886 43101220000 000133455588888888888778888 7888888888888877777777555677
Q ss_pred ceeEEEecCCccccccccccccccc-chhcccCCCccc----cccc--cchhhhchHhhhccccccccccccccc--cc-
Q 038576 166 RISKLKLTNGANICLNEGHIMQLKR-IEDLTSGGDSEA----LYTS--FKNVENGMEAMMRGINHRRELKQIFKQ--ES- 235 (411)
Q Consensus 166 ~l~~L~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~----~~~~--~~~L~~L~~~~~~~l~~~~~l~~~~~~--~~- 235 (411)
+++.|++..+....+.. .+..+.. ++.+....+... .+.. .++|+.| .+.++.-...++.. ..
T Consensus 596 ~L~~L~Ls~N~l~~lp~-~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L------~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV------DFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp EESEEECCSSCCSCCCT-TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEE------ECCSSCTTTTSSSCSSCTT
T ss_pred cceEEECcCCccccchH-HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEE------ECcCCcCCCccccchhhhc
Confidence 88888876643322111 1233333 332221111110 0111 1235566 55555421111110 01
Q ss_pred -cCCCCCcEEEecCCcCCccCCCC-CCCCCCcCeEeecCCCCCccccchHh------hhccccccEEeEccccccccccc
Q 038576 236 -SNAKDLEKLSIFMCDNLTHLVPS-STSFQNLTTLTVWGCHGMINVLTSST------ARSLVRLRQMTIKVCVMITEIVA 307 (411)
Q Consensus 236 -~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~------~~~l~~L~~L~l~~c~~l~~~~~ 307 (411)
...++|+.|+++++. +...+.. ...+++|+.|++++|. ++.++.... .+++++|+.|++++|. ++.++.
T Consensus 669 ~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~ 745 (876)
T 4ecn_A 669 DYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSD 745 (876)
T ss_dssp TCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCG
T ss_pred cccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-CccchH
Confidence 123356666666543 2232221 1135666666666653 334432110 1123366666666654 444443
Q ss_pred ccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecC------CCCCccccCCCCCCCCceE
Q 038576 308 DEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNR------CPNMKIFSEGELSTPKLQK 381 (411)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~------C~~l~~~p~~~~~~~~L~~ 381 (411)
... ...+++|+.|+++++ .++.+|... ..+++|+.|++++ |.-...+|..+..+++|++
T Consensus 746 ~l~----------~~~l~~L~~L~Ls~N-~L~~lp~~l----~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~ 810 (876)
T 4ecn_A 746 DFR----------ATTLPYLSNMDVSYN-CFSSFPTQP----LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810 (876)
T ss_dssp GGS----------TTTCTTCCEEECCSS-CCSSCCCGG----GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCE
T ss_pred Hhh----------hccCCCcCEEEeCCC-CCCccchhh----hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCE
Confidence 221 014677777777775 455553221 3457777777765 3334456666667777777
Q ss_pred EEEe
Q 038576 382 VQMS 385 (411)
Q Consensus 382 l~l~ 385 (411)
|+++
T Consensus 811 L~Ls 814 (876)
T 4ecn_A 811 LQIG 814 (876)
T ss_dssp EECC
T ss_pred EECC
Confidence 7775
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.5e-25 Score=229.64 Aligned_cols=268 Identities=17% Similarity=0.118 Sum_probs=131.9
Q ss_pred ccccCcEEEecCCcCCC--Ccccccc-ccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 12 LLQNLQTLSLDDCELGD--MAIIGDL-KKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~--~~~l~~l-~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
.+.+|++|++++|.++. |..+... ++|++|++++|.++ .+|..++++++|++|++++|.....+|...++++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 56667777777776653 5555543 67777777777666 55666777777777777774333366655466777777
Q ss_pred EEEecccccccCccccccccccccchhhccCCC-CCCEEEEeeccC-CcCCccccc--CCCCcEEEEEecCCc-cccC-c
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLS-KLTSLEILIQDE-KTLPRDLSF--FKMLQRYRILIGDSR-EYDA-W 161 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~-~~~~~~l~~--~~~L~~L~i~~~~~~-~~~~-~ 161 (411)
+|++++|.+.. .+| ..+.+++ +|++|++++|.. ..+|..+.. +++|++|++..+... ..+. +
T Consensus 347 ~L~Ls~n~l~~-~~p-----------~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 347 VLDLSFNEFSG-ELP-----------ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp EEECCSSEEEE-CCC-----------TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred EEeCcCCccCc-ccc-----------HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 77777766554 222 3344443 445555544442 122333322 344444444433222 1111 1
Q ss_pred CCccceeEEEecCCcccccccccccccccchhcccCCCc-----cccccccchhhhchHhhhcccccccccccccccccc
Q 038576 162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDS-----EALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS 236 (411)
Q Consensus 162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~ 236 (411)
....+++.|++..+.........+..++.++.+...... ...+..+++|++| ++.++. +....+....
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L------~L~~N~-l~~~~p~~l~ 487 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL------ILDFND-LTGEIPSGLS 487 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE------ECCSSC-CCSCCCGGGG
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE------EecCCc-ccCcCCHHHh
Confidence 123444444443332211112222333333332211111 1123345566666 666654 2322222334
Q ss_pred CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
.+++|+.|+++++......+.....+++|+.|++++|.....++. .++.+++|+.|++++|.
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSE
T ss_pred cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCc
Confidence 566666666666443323333333366666666666644333322 34556666666666655
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.6e-23 Score=204.02 Aligned_cols=316 Identities=17% Similarity=0.245 Sum_probs=239.2
Q ss_pred hccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576 11 GLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY 90 (411)
Q Consensus 11 ~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~ 90 (411)
..+.+++.|+++++.++..+.+..+++|++|++++|.++.+|. ++++++|++|++++ +.+..++. ++++++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNN-NQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCC-CccccChh--hcCCCCCCEEE
Confidence 3578999999999999885568899999999999999998887 99999999999999 57777775 89999999999
Q ss_pred ecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEE
Q 038576 91 IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKL 170 (411)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L 170 (411)
+++|.+.. ...+.++++|++|++++|....++ .+..+++|+.|.+. +.....+.+....+++.|
T Consensus 119 L~~n~l~~--------------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 119 LFNNQITD--------------IDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKPLANLTTLERL 182 (466)
T ss_dssp CCSSCCCC--------------CGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEE
T ss_pred CCCCCCCC--------------ChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchhhccCCCCCEE
Confidence 99998753 123889999999999999977765 47899999999997 444444556668899999
Q ss_pred EecCCcccccccccccccccchhcccCCC---ccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576 171 KLTNGANICLNEGHIMQLKRIEDLTSGGD---SEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF 247 (411)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~ 247 (411)
++..+..... ..+..++.++.+..... .......+++|++| .+.++. ++.+. ....+++|++|+++
T Consensus 183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L------~l~~n~-l~~~~--~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDEL------SLNGNQ-LKDIG--TLASLTNLTDLDLA 251 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE------ECCSSC-CCCCG--GGGGCTTCSEEECC
T ss_pred ECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEE------ECCCCC-cccch--hhhcCCCCCEEECC
Confidence 9877643322 23445555555543322 22235567888888 888865 44443 24578899999999
Q ss_pred CCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576 248 MCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL 327 (411)
Q Consensus 248 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 327 (411)
++. +.+..+.. .+++|+.|++++|. ++.+++ +..+++|+.|++++|. ++.++. ...+++|
T Consensus 252 ~n~-l~~~~~~~-~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~-------------~~~l~~L 311 (466)
T 1o6v_A 252 NNQ-ISNLAPLS-GLTKLTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDISP-------------ISNLKNL 311 (466)
T ss_dssp SSC-CCCCGGGT-TCTTCSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCGG-------------GGGCTTC
T ss_pred CCc-cccchhhh-cCCCCCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCchh-------------hcCCCCC
Confidence 854 44444433 48999999998875 444433 5788999999999876 554432 2358999
Q ss_pred CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576 328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~ 385 (411)
+.|+++++ .+.+++. . ..+++|++|++.+| .+..++. +..+++|+.|+++
T Consensus 312 ~~L~L~~n-~l~~~~~----~-~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 312 TYLTLYFN-NISDISP----V-SSLTKLQRLFFYNN-KVSDVSS-LANLTNINWLSAG 361 (466)
T ss_dssp SEEECCSS-CCSCCGG----G-GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred CEEECcCC-cCCCchh----h-ccCccCCEeECCCC-ccCCchh-hccCCCCCEEeCC
Confidence 99999998 4666522 1 35799999999997 6777754 6689999999997
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=6.4e-24 Score=212.12 Aligned_cols=354 Identities=15% Similarity=0.112 Sum_probs=223.0
Q ss_pred CCCCC-hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccc--cC
Q 038576 3 LLALP-SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKV--IP 76 (411)
Q Consensus 3 l~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~--~~ 76 (411)
++.+| ..|+++.+|++|++++|.++. +..|+++++|++|++++|.++.++. .++++++|++|++++ +.+.. +|
T Consensus 64 i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp 142 (570)
T 2z63_A 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLP 142 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCC
T ss_pred CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecCh
Confidence 44554 558889999999999999887 5778899999999999998887775 588999999999998 45654 56
Q ss_pred cccccCCCCccEEEecccccccCcccccccc----------------c-cccchhhccCCCCCCEEEEeecc--------
Q 038576 77 PNVISSLSRLEELYIGQSPIQWGKVEGVDGE----------------R-RNASLDELNNLSKLTSLEILIQD-------- 131 (411)
Q Consensus 77 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~----------------~-~~~~~~~l~~l~~L~~L~l~~~~-------- 131 (411)
.. ++++++|++|++++|.+.. ..+..... . ....+..+... +|++++++++.
T Consensus 143 ~~-~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~ 219 (570)
T 2z63_A 143 EY-FSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKT 219 (570)
T ss_dssp GG-GGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHH
T ss_pred hh-hcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhh
Confidence 65 8889999999999887653 11110000 0 00001111111 23444333321
Q ss_pred ---------------------------------------------------CCcCCcccccCCCCcEEEEEecCCccccC
Q 038576 132 ---------------------------------------------------EKTLPRDLSFFKMLQRYRILIGDSREYDA 160 (411)
Q Consensus 132 ---------------------------------------------------~~~~~~~l~~~~~L~~L~i~~~~~~~~~~ 160 (411)
....+..+..+++|+.|++..+....+++
T Consensus 220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~ 299 (570)
T 2z63_A 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299 (570)
T ss_dssp HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCB
T ss_pred hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhh
Confidence 12233445566777888777666666666
Q ss_pred cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccc--cccccCC
Q 038576 161 WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIF--KQESSNA 238 (411)
Q Consensus 161 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~--~~~~~~~ 238 (411)
+....+++.|++..+....+....+..+..+.-.............+++|++| ++.++. +.... ......+
T Consensus 300 ~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L------~l~~n~-l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL------DLSRNG-LSFKGCCSQSDFGT 372 (570)
T ss_dssp CCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEE------ECCSSC-CBEEEEEEHHHHTC
T ss_pred hhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEE------eCcCCc-cCcccccccccccc
Confidence 55422777777766544333332222222222111111111122478899999 998876 33332 2234578
Q ss_pred CCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccC
Q 038576 239 KDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAA 318 (411)
Q Consensus 239 ~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 318 (411)
++|++|+++++... ..++....+++|+.|++++|.. +...+...+..+++|++|++++|. +......
T Consensus 373 ~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---------- 439 (570)
T 2z63_A 373 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG---------- 439 (570)
T ss_dssp SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEE-ESCTTSCTTTTCTTCCEEECTTSC-CEECCTT----------
T ss_pred CccCEEECCCCccc-cccccccccCCCCEEEccCCcc-ccccchhhhhcCCCCCEEeCcCCc-ccccchh----------
Confidence 99999999986433 3332244489999999988754 333232346788999999999986 3333221
Q ss_pred ccccccCCCCeeecCCCcCC-ceeccCCCcccccCCCcceEeecCCCCCccc-cCCCCCCCCceEEEEec
Q 038576 319 QDEIVFSELKELNLSNLQSL-TSFSCSGNNCAFKFPSLERLVVNRCPNMKIF-SEGELSTPKLQKVQMSL 386 (411)
Q Consensus 319 ~~~~~~~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L~~l~l~~ 386 (411)
.+..+++|++|++++|.-. ..+|..- ..+++|++|++++|. +..+ |..+..+++|++|++++
T Consensus 440 -~~~~l~~L~~L~l~~n~l~~~~~p~~~----~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 440 -IFNGLSSLEVLKMAGNSFQENFLPDIF----TELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp -TTTTCTTCCEEECTTCEEGGGEECSCC----TTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCS
T ss_pred -hhhcCCcCcEEECcCCcCccccchhhh----hcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCC
Confidence 2335899999999998633 2343221 346999999999975 5554 66677889999999973
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=7.9e-24 Score=215.98 Aligned_cols=139 Identities=18% Similarity=0.215 Sum_probs=110.2
Q ss_pred CCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576 3 LLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 3 l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
++.+|. .|+++.+|++|++++|.++. +..++++++|++|++++|.++.+|. .++++++|++|++++ +.+..++..
T Consensus 37 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 115 (680)
T 1ziw_A 37 LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS-NSIQKIKNN 115 (680)
T ss_dssp CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCSC
T ss_pred CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC-CccCccChh
Confidence 556665 58999999999999999887 6778999999999999999998887 589999999999999 577888765
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-c--ccCCCCcEEEEEecC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-L--SFFKMLQRYRILIGD 154 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l--~~~~~L~~L~i~~~~ 154 (411)
.++++++|++|++++|.+.. ..+..+.++++|++|++++|....++.. + ..+++|++|++..+.
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSS------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSC------------CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred HccccCCCCEEECCCCcccc------------cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 58999999999999998765 3335667778888888887776555543 2 234667777766544
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9.5e-25 Score=225.34 Aligned_cols=336 Identities=15% Similarity=0.131 Sum_probs=192.9
Q ss_pred hccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 11 GLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
.++.+|++|++++|.++. ++.++++++|++|++++|.++ .+|..++++++|++|++++|.....+|. . .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCE
Confidence 345555555555555554 333556666666666666555 4555566666666666666432223332 2 5566666
Q ss_pred EEecccccccCccccccccccccchhhccCC-CCCCEEEEeeccCC-cCCcccccCCCCcEEEEEecCCc-cccC--cCC
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNL-SKLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGDSR-EYDA--WDG 163 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~i~~~~~~-~~~~--~~~ 163 (411)
|++++|.+.. ..+..+... ++|++|++++|... .+|..++.+++|++|++..+... .++. +..
T Consensus 274 L~L~~n~l~~------------~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~ 341 (768)
T 3rgz_A 274 LSLAENKFTG------------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341 (768)
T ss_dssp EECCSSEEEE------------SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred EECcCCccCC------------ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc
Confidence 6666655543 223444443 66777777776643 55666667777777776655433 2332 333
Q ss_pred ccceeEEEecCCcccccccccccccc-cchhcccCCCccc-----cc--cccchhhhchHhhhccccccccccccccccc
Q 038576 164 ISRISKLKLTNGANICLNEGHIMQLK-RIEDLTSGGDSEA-----LY--TSFKNVENGMEAMMRGINHRRELKQIFKQES 235 (411)
Q Consensus 164 ~~~l~~L~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~-----~~--~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~ 235 (411)
..+++.|++..+.........+..+. .++.++....... .. ..+++|++| .+.++. +....+..+
T Consensus 342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L------~L~~n~-l~~~~p~~l 414 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL------YLQNNG-FTGKIPPTL 414 (768)
T ss_dssp CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE------ECCSSE-EEEECCGGG
T ss_pred CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE------ECCCCc-cccccCHHH
Confidence 56666666655432211111222222 3333322111110 01 125667777 777765 333333344
Q ss_pred cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCC
Q 038576 236 SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDN 315 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 315 (411)
..+++|+.|+++++......+.....+++|+.|++++|.....++. .+..+++|++|++++|.-...++.
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~-------- 484 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIPS-------- 484 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCG--------
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCCH--------
Confidence 6778888888887543333333344478888888888765544432 356788888888888763323333
Q ss_pred ccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576 316 YAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL 386 (411)
Q Consensus 316 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~ 386 (411)
.+..+++|+.|+++++.-...+|..- ..+++|++|++++|.-...+|..+..+++|+.|+++.
T Consensus 485 ----~l~~l~~L~~L~L~~N~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 485 ----GLSNCTNLNWISLSNNRLTGEIPKWI----GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp ----GGGGCTTCCEEECCSSCCCSCCCGGG----GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ----HHhcCCCCCEEEccCCccCCcCChHH----hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 23458899999999876433442221 3468999999999865557888777889999999963
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=8.2e-24 Score=209.07 Aligned_cols=111 Identities=15% Similarity=0.219 Sum_probs=93.1
Q ss_pred CCCCC-hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc--cCc
Q 038576 3 LLALP-SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV--IPP 77 (411)
Q Consensus 3 l~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~--~~~ 77 (411)
++.+| ..|.++.+|++|++++|.++. |..|+++++|++|++++|.++.+|.. .+++|++|++++ +.+.. +|.
T Consensus 33 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~-N~l~~~~~p~ 109 (520)
T 2z7x_B 33 ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSF-NAFDALPICK 109 (520)
T ss_dssp CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCS-SCCSSCCCCG
T ss_pred ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccC-Cccccccchh
Confidence 45565 578999999999999999888 67899999999999999999988876 899999999999 46665 455
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCC--CEEEEeeccC
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKL--TSLEILIQDE 132 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 132 (411)
. ++++++|++|++++|.+.. ..+..+++| +++++++|..
T Consensus 110 ~-~~~l~~L~~L~L~~n~l~~---------------~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 110 E-FGNMSQLKFLGLSTTHLEK---------------SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp G-GGGCTTCCEEEEEESSCCG---------------GGGGGGTTSCEEEEEEEECTT
T ss_pred h-hccCCcceEEEecCcccch---------------hhccccccceeeEEEeecccc
Confidence 5 8999999999999998754 456666777 9999999875
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=8.3e-24 Score=210.96 Aligned_cols=135 Identities=22% Similarity=0.204 Sum_probs=108.2
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|++|++++|.++. +..|+++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|..
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~ 118 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC 118 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC
T ss_pred CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc
Confidence 4677887664 789999999999888 46899999999999999999976 56789999999999999 678888874
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCC--cEEEEEecCC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKML--QRYRILIGDS 155 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L~i~~~~~ 155 (411)
.+++|++|++++|.+... ..+..++++++|++|++++|.... ..+..+++| +.|++..+..
T Consensus 119 ---~l~~L~~L~Ls~N~l~~l-----------~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 ---PMASLRHLDLSFNDFDVL-----------PVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ---CCTTCSEEECCSSCCSBC-----------CCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSC
T ss_pred ---ccccCCEEECCCCCcccc-----------CchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccc
Confidence 899999999999987641 123678889999999999887654 234555666 8888887654
No 26
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.9e-24 Score=213.37 Aligned_cols=302 Identities=15% Similarity=0.187 Sum_probs=199.7
Q ss_pred ccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 12 LLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
.+.++++++++++.+.. | ..+.++++|++|++++|.++.++. .++.+++|++|++++ +.+..++...++.+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCE
Confidence 35678888888888777 4 346778888888888888876654 677888888888888 4677777665778888888
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccce
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISRI 167 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l 167 (411)
|++++|.+.. + ....+.++++|++|++++|.+..+++ .++.+++|++|+++.+.....+ .....++
T Consensus 128 L~L~~n~l~~--l----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L 194 (597)
T 3oja_B 128 LVLERNDLSS--L----------PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSL 194 (597)
T ss_dssp EECCSSCCCC--C----------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTC
T ss_pred EEeeCCCCCC--C----------CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhh
Confidence 8888887653 1 22345778888888888887666554 4677788888887655544321 2224444
Q ss_pred eEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576 168 SKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF 247 (411)
Q Consensus 168 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~ 247 (411)
..|++..+.. .......+|++| .+.++. +..++. ..+++|+.|+++
T Consensus 195 ~~L~l~~n~l------------------------~~l~~~~~L~~L------~ls~n~-l~~~~~---~~~~~L~~L~L~ 240 (597)
T 3oja_B 195 FHANVSYNLL------------------------STLAIPIAVEEL------DASHNS-INVVRG---PVNVELTILKLQ 240 (597)
T ss_dssp SEEECCSSCC------------------------SEEECCTTCSEE------ECCSSC-CCEEEC---SCCSCCCEEECC
T ss_pred hhhhcccCcc------------------------ccccCCchhhee------eccCCc-cccccc---ccCCCCCEEECC
Confidence 4554432111 111234567778 777765 444433 235788888888
Q ss_pred CCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCC
Q 038576 248 MCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSEL 327 (411)
Q Consensus 248 ~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L 327 (411)
++ .+.+.... ..+++|+.|++++|.. +.+.+ ..+..+++|+.|++++|. +..++.... .+|+|
T Consensus 241 ~n-~l~~~~~l-~~l~~L~~L~Ls~N~l-~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~~------------~l~~L 303 (597)
T 3oja_B 241 HN-NLTDTAWL-LNYPGLVEVDLSYNEL-EKIMY-HPFVKMQRLERLYISNNR-LVALNLYGQ------------PIPTL 303 (597)
T ss_dssp SS-CCCCCGGG-GGCTTCSEEECCSSCC-CEEES-GGGTTCSSCCEEECTTSC-CCEEECSSS------------CCTTC
T ss_pred CC-CCCCChhh-ccCCCCCEEECCCCcc-CCCCH-HHhcCccCCCEEECCCCC-CCCCCcccc------------cCCCC
Confidence 85 34444333 3488899999988754 44323 245778889999998865 666544332 38889
Q ss_pred CeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576 328 KELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL 386 (411)
Q Consensus 328 ~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~ 386 (411)
+.|+++++ .+..+|... ..+++|+.|++++| .+..+| ...+++|+.|++++
T Consensus 304 ~~L~Ls~N-~l~~i~~~~----~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 304 KVLDLSHN-HLLHVERNQ----PQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp CEEECCSS-CCCCCGGGH----HHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCS
T ss_pred cEEECCCC-CCCccCccc----ccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeC
Confidence 99999886 466663222 34688999999886 466665 34578888888854
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.5e-23 Score=194.81 Aligned_cols=289 Identities=15% Similarity=0.207 Sum_probs=224.3
Q ss_pred CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS 82 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~ 82 (411)
++.+| .+..+.+|++|++++|.+++.+.+.++++|++|++++|.++.+| .++++++|++|++++ +.+..++. +..
T Consensus 56 i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~-n~i~~~~~--~~~ 130 (347)
T 4fmz_A 56 VASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE-DNISDISP--LAN 130 (347)
T ss_dssp CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT-SCCCCCGG--GTT
T ss_pred cccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC-CcccCchh--hcc
Confidence 45666 48899999999999999998333999999999999999999886 589999999999999 57888876 889
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD 162 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~ 162 (411)
+++|++|++++|.... ....+..+++|++|++++|....++. +..+++|++|++..+.....+.+.
T Consensus 131 l~~L~~L~l~~n~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 196 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLS-------------DLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLA 196 (347)
T ss_dssp CTTCCEEECTTCTTCC-------------CCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGG
T ss_pred CCceeEEECCCCCCcc-------------cccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccccc
Confidence 9999999999996543 23558999999999999998777765 788999999999887776666655
Q ss_pred CccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCc
Q 038576 163 GISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLE 242 (411)
Q Consensus 163 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~ 242 (411)
...+++.+.+..+.... . ..+..+++|++| .+.++. +..+.. ...+++|+
T Consensus 197 ~l~~L~~L~l~~n~l~~--------~-------------~~~~~~~~L~~L------~l~~n~-l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 197 SLTSLHYFTAYVNQITD--------I-------------TPVANMTRLNSL------KIGNNK-ITDLSP--LANLSQLT 246 (347)
T ss_dssp GCTTCCEEECCSSCCCC--------C-------------GGGGGCTTCCEE------ECCSSC-CCCCGG--GTTCTTCC
T ss_pred CCCccceeecccCCCCC--------C-------------chhhcCCcCCEE------EccCCc-cCCCcc--hhcCCCCC
Confidence 57777787775532111 0 013367899999 998876 455444 56899999
Q ss_pred EEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccc
Q 038576 243 KLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEI 322 (411)
Q Consensus 243 ~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 322 (411)
+|+++++ .+..... ...+++|+.|++++| .++++ ..+..+++|+.|++++|. +...... .+.
T Consensus 247 ~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n~-l~~~~~~-----------~l~ 308 (347)
T 4fmz_A 247 WLEIGTN-QISDINA-VKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNNQ-LGNEDME-----------VIG 308 (347)
T ss_dssp EEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCGGGHH-----------HHH
T ss_pred EEECCCC-ccCCChh-HhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCCc-CCCcChh-----------Hhh
Confidence 9999986 4444433 334999999999998 45554 246889999999999986 4444322 233
Q ss_pred ccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCC
Q 038576 323 VFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCP 364 (411)
Q Consensus 323 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~ 364 (411)
.+++|++|++++|+ +++++. . ..+++|++|++.+|+
T Consensus 309 ~l~~L~~L~L~~n~-l~~~~~-~----~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 GLTNLTTLFLSQNH-ITDIRP-L----ASLSKMDSADFANQV 344 (347)
T ss_dssp TCTTCSEEECCSSS-CCCCGG-G----GGCTTCSEESSSCC-
T ss_pred ccccCCEEEccCCc-cccccC-h----hhhhccceeehhhhc
Confidence 58999999999986 666632 2 447999999999974
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=6.9e-23 Score=213.59 Aligned_cols=339 Identities=17% Similarity=0.165 Sum_probs=202.1
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCc-cccc-hHHhcCCCCCCEEecCCCCCccccCc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSD-MEEL-AGEIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~-l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
+++.+|. -..+|++|++++|.++. +..|.++++|++|++++|. +..+ |..++++++|++|++++ +.+..+++
T Consensus 15 ~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p 90 (844)
T 3j0a_A 15 NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHP 90 (844)
T ss_dssp CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECT
T ss_pred CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCH
Confidence 5788887 34789999999999887 7889999999999999994 4466 67799999999999999 56777744
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhh--ccCCCCCCEEEEeeccCCcCC--cccccCCCCcEEEEEec
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE--LNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRILIG 153 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~~~ 153 (411)
..++++++|++|++++|.+.. ..+.. +.++++|++|++++|....++ ..++.+++|++|+++.+
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSD------------AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSS------------CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred hHccCCcccCEeeCcCCCCCc------------ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 459999999999999998764 22233 888999999999999866653 46888999999999876
Q ss_pred CCcccc--CcCCc--cceeEEEecCCccccccccccccccc------chhcccCCC------------------------
Q 038576 154 DSREYD--AWDGI--SRISKLKLTNGANICLNEGHIMQLKR------IEDLTSGGD------------------------ 199 (411)
Q Consensus 154 ~~~~~~--~~~~~--~~l~~L~~~~~~~~~~~~~~~~~~~~------l~~~~~~~~------------------------ 199 (411)
...... ++... .+++.|.+..+.........+..+.. ++.+.....
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 543321 11111 44555555433221111001111100 111100000
Q ss_pred -----------------ccccccc--cchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCC
Q 038576 200 -----------------SEALYTS--FKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSST 260 (411)
Q Consensus 200 -----------------~~~~~~~--~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 260 (411)
....+.. .++|++| ++.++. +..+.......+++|+.|+++++......+....
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L------~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 311 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL------DLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE------ECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT
T ss_pred ccccccccccccccCCCChhhhhccccCCccEE------ECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc
Confidence 0000011 2456666 665544 3344343445666777777776433222222333
Q ss_pred CCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCce
Q 038576 261 SFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTS 340 (411)
Q Consensus 261 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 340 (411)
.+++|+.|++++|.. +.+.+ ..+..+++|+.|+++++. +..+... .+..+++|+.|+++++ .++.
T Consensus 312 ~l~~L~~L~Ls~N~l-~~~~~-~~~~~l~~L~~L~L~~N~-i~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~ 376 (844)
T 3j0a_A 312 GLDNLQVLNLSYNLL-GELYS-SNFYGLPKVAYIDLQKNH-IAIIQDQ-----------TFKFLEKLQTLDLRDN-ALTT 376 (844)
T ss_dssp TCSSCCEEEEESCCC-SCCCS-CSCSSCTTCCEEECCSCC-CCCCCSS-----------CSCSCCCCCEEEEETC-CSCC
T ss_pred CCCCCCEEECCCCCC-CccCH-HHhcCCCCCCEEECCCCC-CCccChh-----------hhcCCCCCCEEECCCC-CCCc
Confidence 466777777766643 33322 234566777777777654 4444322 2234677777777764 3444
Q ss_pred eccCCCcccccCCCcceEeecCCCCCccccCC----------------------CCCCCCceEEEEecc
Q 038576 341 FSCSGNNCAFKFPSLERLVVNRCPNMKIFSEG----------------------ELSTPKLQKVQMSLV 387 (411)
Q Consensus 341 ~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~----------------------~~~~~~L~~l~l~~~ 387 (411)
++ .+++|+.|.+.++ ++..+|.. +..+++|+.|+++++
T Consensus 377 i~--------~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 377 IH--------FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN 436 (844)
T ss_dssp CS--------SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC
T ss_pred cc--------CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCC
Confidence 41 1355666665553 33444331 125677888888633
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.9e-23 Score=202.38 Aligned_cols=310 Identities=16% Similarity=0.150 Sum_probs=202.3
Q ss_pred ChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCc
Q 038576 7 PSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRL 86 (411)
Q Consensus 7 p~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L 86 (411)
+..++++.+|++|++++|.++..+.++.+++|++|++++|.++.+| ++++++|++|++++ +.++.++ ++.+++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~-N~l~~~~---~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDS-NKLTNLD---VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS-SCCSCCC---CTTCTTC
T ss_pred ccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcC-CCCceee---cCCCCcC
Confidence 3467889999999999999998447999999999999999999886 88999999999999 5688775 7899999
Q ss_pred cEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccc
Q 038576 87 EELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISR 166 (411)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~ 166 (411)
++|++++|.+.. -.++++++|++|++++|....++ ++.+++|+.|++..+.....-.+....+
T Consensus 109 ~~L~L~~N~l~~---------------l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~ 171 (457)
T 3bz5_A 109 TYLNCDTNKLTK---------------LDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQ 171 (457)
T ss_dssp CEEECCSSCCSC---------------CCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTT
T ss_pred CEEECCCCcCCe---------------ecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCc
Confidence 999999998764 23788999999999999987764 7789999999987664332223444777
Q ss_pred eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576 167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI 246 (411)
Q Consensus 167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l 246 (411)
++.|++..+.-..+. +..+++|++| .+.++. ++.+ ....+++|+.|++
T Consensus 172 L~~L~ls~n~l~~l~----------------------l~~l~~L~~L------~l~~N~-l~~~---~l~~l~~L~~L~L 219 (457)
T 3bz5_A 172 LTTLDCSFNKITELD----------------------VSQNKLLNRL------NCDTNN-ITKL---DLNQNIQLTFLDC 219 (457)
T ss_dssp CCEEECCSSCCCCCC----------------------CTTCTTCCEE------ECCSSC-CSCC---CCTTCTTCSEEEC
T ss_pred CCEEECCCCccceec----------------------cccCCCCCEE------ECcCCc-CCee---ccccCCCCCEEEC
Confidence 888877654221110 2245667777 776654 3333 2356677777777
Q ss_pred cCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576 247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE 326 (411)
Q Consensus 247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (411)
+++ .+.+. +.. .+++|+.|++++|. ++.++ .+.+++|+.|++.++. ++.+...... ..... ....+++
T Consensus 220 s~N-~l~~i-p~~-~l~~L~~L~l~~N~-l~~~~----~~~l~~L~~L~l~~n~-L~~L~l~~n~-~~~~~--~~~~l~~ 287 (457)
T 3bz5_A 220 SSN-KLTEI-DVT-PLTQLTYFDCSVNP-LTELD----VSTLSKLTTLHCIQTD-LLEIDLTHNT-QLIYF--QAEGCRK 287 (457)
T ss_dssp CSS-CCSCC-CCT-TCTTCSEEECCSSC-CSCCC----CTTCTTCCEEECTTCC-CSCCCCTTCT-TCCEE--ECTTCTT
T ss_pred cCC-ccccc-Ccc-ccCCCCEEEeeCCc-CCCcC----HHHCCCCCEEeccCCC-CCEEECCCCc-cCCcc--ccccccc
Confidence 774 34443 333 37777777777664 34332 2345555555444322 3332211110 00000 1224677
Q ss_pred CCeeecCCCcCCceeccCCCcc----cccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576 327 LKELNLSNLQSLTSFSCSGNNC----AFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL 386 (411)
Q Consensus 327 L~~L~l~~c~~l~~~~~~~~~~----~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~ 386 (411)
|+.|++++|+.+..+|...... ...+++|++|++.++ +++.++ +..+++|+.|++++
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCC
Confidence 7777777777666664321100 023456666666553 455543 45677777777753
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=6e-24 Score=202.34 Aligned_cols=298 Identities=15% Similarity=0.231 Sum_probs=222.9
Q ss_pred ccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccc
Q 038576 34 DLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNAS 112 (411)
Q Consensus 34 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 112 (411)
.+.++++|+++++.++.+|.. +.++++|++|++++ +.+..++...++.+++|++|++++|.+.. ..
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------LP 109 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCC------------CC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCc------------CC
Confidence 468999999999999999876 68899999999999 57888887669999999999999998865 33
Q ss_pred hhhccCCCCCCEEEEeeccCCcCCccc-ccCCCCcEEEEEecCCccccC--cCCccceeEEEecCCcccccccccccccc
Q 038576 113 LDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRILIGDSREYDA--WDGISRISKLKLTNGANICLNEGHIMQLK 189 (411)
Q Consensus 113 ~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~~~~~~~--~~~~~~l~~L~~~~~~~~~~~~~~~~~~~ 189 (411)
+..++++++|++|++++|....+|..+ ..+++|++|++..+.....+. +....+++.|++..+.....
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------- 180 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------- 180 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---------
T ss_pred HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---------
Confidence 467899999999999999998998874 789999999999777655433 34477788887755321110
Q ss_pred cchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEe
Q 038576 190 RIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLT 269 (411)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 269 (411)
....+++|++| .+.++. +..+ ...++|++|+++++. +...+.. . +++|+.|+
T Consensus 181 -------------~~~~l~~L~~L------~l~~n~-l~~~-----~~~~~L~~L~l~~n~-l~~~~~~-~-~~~L~~L~ 232 (390)
T 3o6n_A 181 -------------DLSLIPSLFHA------NVSYNL-LSTL-----AIPIAVEELDASHNS-INVVRGP-V-NVELTILK 232 (390)
T ss_dssp -------------CGGGCTTCSEE------ECCSSC-CSEE-----ECCSSCSEEECCSSC-CCEEECC-C-CSSCCEEE
T ss_pred -------------cccccccccee------eccccc-cccc-----CCCCcceEEECCCCe-eeecccc-c-cccccEEE
Confidence 12356788888 887764 3332 245689999999854 3333322 2 78999999
Q ss_pred ecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCccc
Q 038576 270 VWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCA 349 (411)
Q Consensus 270 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 349 (411)
+++|. +++. ..+..+++|++|+++++. ++.+... .+..+++|++|+++++ .++.++...
T Consensus 233 l~~n~-l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~n-~l~~~~~~~---- 291 (390)
T 3o6n_A 233 LQHNN-LTDT---AWLLNYPGLVEVDLSYNE-LEKIMYH-----------PFVKMQRLERLYISNN-RLVALNLYG---- 291 (390)
T ss_dssp CCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCEEESG-----------GGTTCSSCCEEECCSS-CCCEEECSS----
T ss_pred CCCCC-Cccc---HHHcCCCCccEEECCCCc-CCCcChh-----------HccccccCCEEECCCC-cCcccCccc----
Confidence 99885 4443 356889999999999986 5555332 2335899999999996 688874333
Q ss_pred ccCCCcceEeecCCCCCccccCCCCCCCCceEEEEeccccchhcccCCchhhHHHH
Q 038576 350 FKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSLVDEKLWAWDRDLNTTIQYV 405 (411)
Q Consensus 350 ~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~~c~~l~~~~~~~~~~l~~l 405 (411)
..+++|++|++++| .+..+|..+..+++|++|++.++. +.......+++|+.+
T Consensus 292 ~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~L~~L 344 (390)
T 3o6n_A 292 QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS--IVTLKLSTHHTLKNL 344 (390)
T ss_dssp SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC--CCCCCCCTTCCCSEE
T ss_pred CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc--cceeCchhhccCCEE
Confidence 23699999999997 688888877788999999997332 323334444444443
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.4e-23 Score=201.17 Aligned_cols=324 Identities=19% Similarity=0.237 Sum_probs=221.4
Q ss_pred CCCC-ChhhhccccCcEEEecCCcCCC---CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccc-c-
Q 038576 3 LLAL-PSSLGLLQNLQTLSLDDCELGD---MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKV-I- 75 (411)
Q Consensus 3 l~~l-p~~l~~l~~L~~L~l~~~~l~~---~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~-~- 75 (411)
++.+ |..|+++.+|++|++++|.+.. +..|.++++|++|++++|.++.+ |..++++++|++|++++| .+.. .
T Consensus 42 i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 120 (455)
T 3v47_A 42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVL 120 (455)
T ss_dssp CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHH
T ss_pred cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCC-CCCcccc
Confidence 3444 6779999999999999999764 56799999999999999999865 778999999999999995 5554 2
Q ss_pred CcccccCCCCccEEEecccccccCccccccccccccchhh-ccCCCCCCEEEEeeccCCcC-CcccccC--CCCcEEEEE
Q 038576 76 PPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE-LNNLSKLTSLEILIQDEKTL-PRDLSFF--KMLQRYRIL 151 (411)
Q Consensus 76 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~l~~~--~~L~~L~i~ 151 (411)
+...++++++|++|++++|.+.. ..+.. +.++++|++|++++|....+ +..+..+ .+|+.|++.
T Consensus 121 ~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 121 SGNFFKPLTSLEMLVLRDNNIKK------------IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp HSSTTTTCTTCCEEECCSSBCCS------------CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CcccccCcccCCEEECCCCccCc------------cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 23348899999999999998865 22344 88999999999999986555 3445444 567777766
Q ss_pred ecCCccccCcC----------CccceeEEEecCCcccccccccccc---cccchhcccC-------------CCc--ccc
Q 038576 152 IGDSREYDAWD----------GISRISKLKLTNGANICLNEGHIMQ---LKRIEDLTSG-------------GDS--EAL 203 (411)
Q Consensus 152 ~~~~~~~~~~~----------~~~~l~~L~~~~~~~~~~~~~~~~~---~~~l~~~~~~-------------~~~--~~~ 203 (411)
.+.....+... ...+++.|+++++.........+.. ...++.+... +.. ...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 55444333221 1356777777665322100000000 0111111100 000 000
Q ss_pred cc--ccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccc
Q 038576 204 YT--SFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLT 281 (411)
Q Consensus 204 ~~--~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 281 (411)
+. ..++|++| ++.++. +.......+..+++|++|+++++......+.....+++|+.|++++|. ++.+.+
T Consensus 269 ~~~~~~~~L~~L------~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 340 (455)
T 3v47_A 269 FKGLEASGVKTC------DLSKSK-IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDS 340 (455)
T ss_dssp TGGGTTSCCCEE------ECCSSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECG
T ss_pred cccccccCceEE------EecCcc-ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcCh
Confidence 11 23678999 998876 555555556789999999999865443333344458999999999985 455533
Q ss_pred hHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeec
Q 038576 282 SSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVN 361 (411)
Q Consensus 282 ~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~ 361 (411)
..++.+++|++|++++|. ++.+... .+..+++|++|+++++ .++++|... . ..+++|++|+++
T Consensus 341 -~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~L~~N-~l~~~~~~~--~-~~l~~L~~L~l~ 403 (455)
T 3v47_A 341 -RMFENLDKLEVLDLSYNH-IRALGDQ-----------SFLGLPNLKELALDTN-QLKSVPDGI--F-DRLTSLQKIWLH 403 (455)
T ss_dssp -GGGTTCTTCCEEECCSSC-CCEECTT-----------TTTTCTTCCEEECCSS-CCSCCCTTT--T-TTCTTCCEEECC
T ss_pred -hHhcCcccCCEEECCCCc-ccccChh-----------hccccccccEEECCCC-ccccCCHhH--h-ccCCcccEEEcc
Confidence 346889999999999986 5555332 2345899999999996 677773222 1 346999999999
Q ss_pred CCC
Q 038576 362 RCP 364 (411)
Q Consensus 362 ~C~ 364 (411)
+++
T Consensus 404 ~N~ 406 (455)
T 3v47_A 404 TNP 406 (455)
T ss_dssp SSC
T ss_pred CCC
Confidence 865
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=9.1e-23 Score=206.16 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=75.7
Q ss_pred CCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCc
Q 038576 260 TSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLT 339 (411)
Q Consensus 260 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 339 (411)
..+++|+.|++++|.....+.+. .+..+++|+.|++++|. ++.++.. .+..+++|++|+++++ +++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~~-----------~f~~l~~L~~L~Ls~N-~l~ 531 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSPT-----------AFNSLSSLQVLNMSHN-NFF 531 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECTT-----------TTTTCTTCCEEECTTS-CCC
T ss_pred ccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcChH-----------HHcCCCCCCEEECCCC-cCC
Confidence 34677888888877655544332 35678889999998875 6666443 2345899999999996 677
Q ss_pred eeccCCCcccccCCCcceEeecCCCCCccccC-CCCCC-CCceEEEEec
Q 038576 340 SFSCSGNNCAFKFPSLERLVVNRCPNMKIFSE-GELST-PKLQKVQMSL 386 (411)
Q Consensus 340 ~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~-~~~~~-~~L~~l~l~~ 386 (411)
+++ .... ..+++|++|+++++ ++..++. .+..+ ++|+.|++++
T Consensus 532 ~l~--~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 532 SLD--TFPY-KCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp BCC--CGGG-TTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCC--hhHH-hCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 773 2222 34689999999995 5666554 44445 6899999954
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.6e-23 Score=203.24 Aligned_cols=280 Identities=16% Similarity=0.196 Sum_probs=198.5
Q ss_pred CCCC-ChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576 3 LLAL-PSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 3 l~~l-p~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
++.+ |..|.++.+|++|++++|.++. +..|+++++|++|++++|.++.+|.. ++++++|++|++++ +.+..++..
T Consensus 44 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~ 122 (477)
T 2id5_A 44 IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE-NKIVILLDY 122 (477)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT-SCCCEECTT
T ss_pred cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC-CccccCChh
Confidence 4455 4679999999999999999888 78899999999999999999988865 78999999999999 577777655
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCcc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSRE 157 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~ 157 (411)
.+.++++|++|++++|.+.. ..+..+.++++|++|++++|....++. .+..+++|+.|++..+....
T Consensus 123 ~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 123 MFQDLYNLKSLEVGDNDLVY------------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTTTCTTCCEEEECCTTCCE------------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred HccccccCCEEECCCCccce------------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 59999999999999998865 344678899999999999999888876 47889999999999776654
Q ss_pred ccC--cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccc
Q 038576 158 YDA--WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQES 235 (411)
Q Consensus 158 ~~~--~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~ 235 (411)
.+. +....+++.|++.++.... .+.... ....+|++| ++.++. ++.++...+
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~-------------~~~~~~------~~~~~L~~L------~l~~n~-l~~~~~~~~ 244 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLD-------------TMTPNC------LYGLNLTSL------SITHCN-LTAVPYLAV 244 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCC-------------EECTTT------TTTCCCSEE------EEESSC-CCSCCHHHH
T ss_pred eChhhcccCcccceeeCCCCcccc-------------ccCccc------ccCccccEE------ECcCCc-ccccCHHHh
Confidence 443 2235666666665432221 111110 122367777 777764 555554444
Q ss_pred cCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCC
Q 038576 236 SNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGD 314 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 314 (411)
..+++|+.|+++++. +.... .....+++|+.|++++|. ++.+.+ ..+..+++|+.|+++++. ++.++..
T Consensus 245 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~------ 314 (477)
T 2id5_A 245 RHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-YAFRGLNYLRVLNVSGNQ-LTTLEES------ 314 (477)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSC-CSEECT-TTBTTCTTCCEEECCSSC-CSCCCGG------
T ss_pred cCccccCeeECCCCc-CCccChhhccccccCCEEECCCCc-cceECH-HHhcCcccCCEEECCCCc-CceeCHh------
Confidence 567778888887754 33322 223347778888887764 344323 234667788888887764 5555432
Q ss_pred CccCccccccCCCCeeecCCCc
Q 038576 315 NYAAQDEIVFSELKELNLSNLQ 336 (411)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~c~ 336 (411)
.+..+++|++|++++.+
T Consensus 315 -----~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 -----VFHSVGNLETLILDSNP 331 (477)
T ss_dssp -----GBSCGGGCCEEECCSSC
T ss_pred -----HcCCCcccCEEEccCCC
Confidence 12246778888877754
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=8.1e-23 Score=213.04 Aligned_cols=135 Identities=22% Similarity=0.222 Sum_probs=100.9
Q ss_pred ChhhhccccCcEEEecCCcC-CC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccc-cC-cccc
Q 038576 7 PSSLGLLQNLQTLSLDDCEL-GD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKV-IP-PNVI 80 (411)
Q Consensus 7 p~~l~~l~~L~~L~l~~~~l-~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~-~~-~~~l 80 (411)
|..|.++.+|++|++++|.. .. +..|+++++|++|++++|.+..+ |..++++++|++|++++| .+.. ++ ...+
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccc
Confidence 56789999999999999964 33 67799999999999999998865 778999999999999995 5544 33 2347
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccC--CCCcEEEEEec
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFF--KMLQRYRILIG 153 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~--~~L~~L~i~~~ 153 (411)
+++++|++|++++|.+.. . .....++++++|++|++++|.+..+ +..+..+ ++|+.|.+..+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~-~----------~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRS-L----------YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp SSCSSCCEEEEESCCCCC-C----------CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred cccCCCCEEECCCCcccc-c----------ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 899999999999998764 1 1125688889999999988875433 3344444 55555555543
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=1.7e-22 Score=187.55 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=112.8
Q ss_pred cccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576 13 LQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91 (411)
Q Consensus 13 l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l 91 (411)
..+++.|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|++++ +.+..+|.. ++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR-NPLRALPAS-IASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGG-GGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCC-CccccCcHH-HhcCcCCCEEEC
Confidence 3789999999999999 8889999999999999999999999999999999999999 577788877 999999999999
Q ss_pred cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576 92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 154 (411)
++|.... .+|..... ......+.++++|++|++++|.+..+|..++.+++|++|++..+.
T Consensus 158 ~~n~~~~-~~p~~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 158 RACPELT-ELPEPLAS--TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp EEETTCC-CCCSCSEE--EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred CCCCCcc-ccChhHhh--ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence 9987765 44421111 111233556899999999999988899888889999999887444
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.5e-23 Score=206.32 Aligned_cols=281 Identities=16% Similarity=0.242 Sum_probs=216.4
Q ss_pred ccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccc
Q 038576 34 DLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNAS 112 (411)
Q Consensus 34 ~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 112 (411)
.+.+++.++++++.+..+|.. ++++++|++|++++ +.+..++...++.+++|++|++++|.+.. ..
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRY------------LP 115 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCC------------CC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCC------------CC
Confidence 468999999999999988876 67899999999999 57888876559999999999999999875 33
Q ss_pred hhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccC--cCCccceeEEEecCCcccccccccccccc
Q 038576 113 LDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDA--WDGISRISKLKLTNGANICLNEGHIMQLK 189 (411)
Q Consensus 113 ~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~--~~~~~~l~~L~~~~~~~~~~~~~~~~~~~ 189 (411)
+..++++++|++|++++|.+..+|.. ++.+++|++|+++.+.....+. +....+++.|++..+.....
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------- 186 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------- 186 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------
Confidence 46789999999999999998888887 4889999999999877655442 44477888888765322110
Q ss_pred cchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEe
Q 038576 190 RIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLT 269 (411)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~ 269 (411)
....+++|++| .+.++. +..+ ...++|+.|+++++. +...++.. +++|+.|+
T Consensus 187 -------------~~~~l~~L~~L------~l~~n~-l~~l-----~~~~~L~~L~ls~n~-l~~~~~~~--~~~L~~L~ 238 (597)
T 3oja_B 187 -------------DLSLIPSLFHA------NVSYNL-LSTL-----AIPIAVEELDASHNS-INVVRGPV--NVELTILK 238 (597)
T ss_dssp -------------CGGGCTTCSEE------ECCSSC-CSEE-----ECCTTCSEEECCSSC-CCEEECSC--CSCCCEEE
T ss_pred -------------Chhhhhhhhhh------hcccCc-cccc-----cCCchhheeeccCCc-cccccccc--CCCCCEEE
Confidence 12356788888 887764 3332 345789999999854 43333322 57999999
Q ss_pred ecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCccc
Q 038576 270 VWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCA 349 (411)
Q Consensus 270 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 349 (411)
+++|. ++.. ..+..+++|+.|++++|. +..+... .+..+++|+.|+++++ .+..+|....
T Consensus 239 L~~n~-l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~L~Ls~N-~l~~l~~~~~--- 298 (597)
T 3oja_B 239 LQHNN-LTDT---AWLLNYPGLVEVDLSYNE-LEKIMYH-----------PFVKMQRLERLYISNN-RLVALNLYGQ--- 298 (597)
T ss_dssp CCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCEEESG-----------GGTTCSSCCEEECTTS-CCCEEECSSS---
T ss_pred CCCCC-CCCC---hhhccCCCCCEEECCCCc-cCCCCHH-----------HhcCccCCCEEECCCC-CCCCCCcccc---
Confidence 99885 4443 356889999999999986 5554332 2335899999999996 6888854432
Q ss_pred ccCCCcceEeecCCCCCccccCCCCCCCCceEEEEec
Q 038576 350 FKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMSL 386 (411)
Q Consensus 350 ~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~~ 386 (411)
.+|+|+.|++++| .+..+|..+..+++|+.|++++
T Consensus 299 -~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~ 333 (597)
T 3oja_B 299 -PIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDH 333 (597)
T ss_dssp -CCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCS
T ss_pred -cCCCCcEEECCCC-CCCccCcccccCCCCCEEECCC
Confidence 3699999999997 5778988777899999999973
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.2e-21 Score=195.39 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=114.6
Q ss_pred ccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 12 LLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
.|...++++++++.++. |..+. ++|++|++++|.++.++ ..++++++|++|++++ +.++.++.+.++++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEE
Confidence 34556899999999999 76664 89999999999999776 5799999999999999 57888866669999999999
Q ss_pred EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC--cccccCCCCcEEEEEecCCccccCcCCccce
Q 038576 90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP--RDLSFFKMLQRYRILIGDSREYDAWDGISRI 167 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l 167 (411)
++++|.+.. +| .. .+++|++|++++|....++ ..++.+++|++|+++.+.... .++....++
T Consensus 106 ~Ls~N~l~~--lp-----------~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~L 169 (562)
T 3a79_B 106 DVSHNRLQN--IS-----------CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LDLLPVAHL 169 (562)
T ss_dssp ECTTSCCCE--EC-----------SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TTTGGGTTS
T ss_pred ECCCCcCCc--cC-----------cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cchhhhhhc
Confidence 999998863 33 23 7999999999999977654 689999999999999766543 223333444
Q ss_pred --eEEEecCC
Q 038576 168 --SKLKLTNG 175 (411)
Q Consensus 168 --~~L~~~~~ 175 (411)
+.|++..+
T Consensus 170 ~L~~L~L~~n 179 (562)
T 3a79_B 170 HLSCILLDLV 179 (562)
T ss_dssp CEEEEEEEES
T ss_pred eeeEEEeecc
Confidence 77777654
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.6e-21 Score=181.23 Aligned_cols=288 Identities=14% Similarity=0.163 Sum_probs=193.6
Q ss_pred ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576 14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l 91 (411)
.++++++++++.++. |..+. ++|++|++++|.++.++. .++++++|++|++++ +.+..++...++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEEC
Confidence 378999999988888 66554 689999999999987765 688999999999998 5677774444889999999999
Q ss_pred cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccceeEE
Q 038576 92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISRISKL 170 (411)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L 170 (411)
++|.+.. ++ ..+. ++|++|++++|....++. .+..+++|+.|++..+.......
T Consensus 108 s~n~l~~--l~-----------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------- 162 (330)
T 1xku_A 108 SKNQLKE--LP-----------EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI---------- 162 (330)
T ss_dssp CSSCCSB--CC-----------SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB----------
T ss_pred CCCcCCc--cC-----------hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc----------
Confidence 9988753 22 2222 689999999998777765 36788999999886443321000
Q ss_pred EecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCc
Q 038576 171 KLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCD 250 (411)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~ 250 (411)
....+..+++|++| .+.++. ++.++. ..+++|++|+++++.
T Consensus 163 -----------------------------~~~~~~~l~~L~~L------~l~~n~-l~~l~~---~~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 163 -----------------------------ENGAFQGMKKLSYI------RIADTN-ITTIPQ---GLPPSLTELHLDGNK 203 (330)
T ss_dssp -----------------------------CTTGGGGCTTCCEE------ECCSSC-CCSCCS---SCCTTCSEEECTTSC
T ss_pred -----------------------------ChhhccCCCCcCEE------ECCCCc-cccCCc---cccccCCEEECCCCc
Confidence 00112356777777 777765 444433 234788888888754
Q ss_pred CCccC-CCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCe
Q 038576 251 NLTHL-VPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKE 329 (411)
Q Consensus 251 ~l~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 329 (411)
+... +.....+++|+.|++++|. ++.+++ ..+..+++|+.|++++|. +..++.. ...+++|++
T Consensus 204 -l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~------------l~~l~~L~~ 267 (330)
T 1xku_A 204 -ITKVDAASLKGLNNLAKLGLSFNS-ISAVDN-GSLANTPHLRELHLNNNK-LVKVPGG------------LADHKYIQV 267 (330)
T ss_dssp -CCEECTGGGTTCTTCCEEECCSSC-CCEECT-TTGGGSTTCCEEECCSSC-CSSCCTT------------TTTCSSCCE
T ss_pred -CCccCHHHhcCCCCCCEEECCCCc-CceeCh-hhccCCCCCCEEECCCCc-CccCChh------------hccCCCcCE
Confidence 3333 2233447888899888775 444433 245778889999998875 5555443 234788999
Q ss_pred eecCCCcCCceeccCCCc---ccccCCCcceEeecCCCCCc--cccCCCCCCCCceEEEEe
Q 038576 330 LNLSNLQSLTSFSCSGNN---CAFKFPSLERLVVNRCPNMK--IFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 330 L~l~~c~~l~~~~~~~~~---~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~l~ 385 (411)
|+++++ .++.++..... .....++|+.|++.+.+-.. ..|..+..+++++.++++
T Consensus 268 L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 268 VYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327 (330)
T ss_dssp EECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC-
T ss_pred EECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEec
Confidence 999886 46666321110 00124788889998865321 233445578888888886
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=7.9e-22 Score=183.47 Aligned_cols=298 Identities=16% Similarity=0.178 Sum_probs=197.8
Q ss_pred CCCCChhhhcc------ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccc
Q 038576 3 LLALPSSLGLL------QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKV 74 (411)
Q Consensus 3 l~~lp~~l~~l------~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~ 74 (411)
++.+|..+... .++++++++++.++. |..+. ++|++|++++|.++.++ ..++++++|++|++++ +.++.
T Consensus 16 l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~ 92 (332)
T 2ft3_A 16 LDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN-NKISK 92 (332)
T ss_dssp ---------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCE
T ss_pred cccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC-CccCc
Confidence 45677654433 379999999999988 76663 69999999999999775 4799999999999999 57888
Q ss_pred cCcccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEec
Q 038576 75 IPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIG 153 (411)
Q Consensus 75 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~ 153 (411)
++...++++++|++|++++|.+.. ++ ..+. ++|++|++++|....++.. +..+++|++|++..+
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l~~--l~-----------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHLVE--IP-----------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCCCS--CC-----------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred cCHhHhhCcCCCCEEECCCCcCCc--cC-----------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 855559999999999999998763 33 3333 7899999999998888764 788999999998754
Q ss_pred CCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccc
Q 038576 154 DSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~ 233 (411)
.....+.. ...+..+ +|++| ++.++. ++.++.
T Consensus 158 ~l~~~~~~---------------------------------------~~~~~~l-~L~~L------~l~~n~-l~~l~~- 189 (332)
T 2ft3_A 158 PLENSGFE---------------------------------------PGAFDGL-KLNYL------RISEAK-LTGIPK- 189 (332)
T ss_dssp CCBGGGSC---------------------------------------TTSSCSC-CCSCC------BCCSSB-CSSCCS-
T ss_pred ccccCCCC---------------------------------------cccccCC-ccCEE------ECcCCC-CCccCc-
Confidence 43210000 0001123 67777 777665 444433
Q ss_pred cccCCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCC
Q 038576 234 ESSNAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDE 312 (411)
Q Consensus 234 ~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 312 (411)
..+++|++|+++++. +.... .....+++|+.|++++|. ++.+++ ..+..+++|+.|++++|. ++.++..
T Consensus 190 --~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~~---- 259 (332)
T 2ft3_A 190 --DLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN-GSLSFLPTLRELHLDNNK-LSRVPAG---- 259 (332)
T ss_dssp --SSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSC-CCCCCT-TGGGGCTTCCEEECCSSC-CCBCCTT----
T ss_pred --cccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCcCCh-hHhhCCCCCCEEECCCCc-CeecChh----
Confidence 234788888888743 33333 333447888888888774 444433 245778888888888875 5555442
Q ss_pred CCCccCccccccCCCCeeecCCCcCCceeccCCCc---ccccCCCcceEeecCCCCC--ccccCCCCCCCCceEEEEe
Q 038576 313 GDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNN---CAFKFPSLERLVVNRCPNM--KIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 313 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~---~~~~~~~L~~L~i~~C~~l--~~~p~~~~~~~~L~~l~l~ 385 (411)
...+++|+.|+++++ .++.++..... ....+++|+.|++.+++-. ...|..+..+++|+.+++.
T Consensus 260 --------l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 260 --------LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp --------GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred --------hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 334888888888885 46666321110 0011477888988887633 2233445578888888886
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.5e-21 Score=180.13 Aligned_cols=112 Identities=24% Similarity=0.348 Sum_probs=60.3
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNV 79 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~ 79 (411)
++.+|..+. .+|++|++++|.++. +..++++++|++|++++|.++.+ |..++++++|++|++++ +.++.+|..
T Consensus 45 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~- 120 (332)
T 2ft3_A 45 LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK-NHLVEIPPN- 120 (332)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS-SCCCSCCSS-
T ss_pred ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC-CcCCccCcc-
Confidence 344554442 356666666665555 34555566666666666655544 44555666666666665 355555544
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE 132 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 132 (411)
+. ++|++|++++|.+.. .....+.++++|++|++++|..
T Consensus 121 ~~--~~L~~L~l~~n~i~~------------~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 121 LP--SSLVELRIHDNRIRK------------VPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CC--TTCCEEECCSSCCCC------------CCSGGGSSCSSCCEEECCSCCC
T ss_pred cc--ccCCEEECCCCccCc------------cCHhHhCCCccCCEEECCCCcc
Confidence 22 556666666655542 1123355556666666665554
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.8e-21 Score=188.63 Aligned_cols=290 Identities=17% Similarity=0.162 Sum_probs=203.7
Q ss_pred CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS 82 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~ 82 (411)
++.+| .++++.+|++|++++|.++..+ ++.+++|++|++++|.++.+| ++++++|++|++++ +.++.++ ++.
T Consensus 54 l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~-N~l~~l~---~~~ 125 (457)
T 3bz5_A 54 ITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT-NKLTKLD---VSQ 125 (457)
T ss_dssp CCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS-SCCSCCC---CTT
T ss_pred cccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC-CcCCeec---CCC
Confidence 56677 6899999999999999998843 889999999999999999886 89999999999999 5788775 789
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCccccCc
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSREYDAW 161 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~ 161 (411)
+++|++|++++|.+.. -.++++++|++|++++|. ...+ .+..+++|+.|+++.+....++ +
T Consensus 126 l~~L~~L~l~~N~l~~---------------l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-l 187 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE---------------IDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-V 187 (457)
T ss_dssp CTTCCEEECTTSCCSC---------------CCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC-C
T ss_pred CCcCCEEECCCCccce---------------eccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec-c
Confidence 9999999999998864 247788999999999984 4444 4678899999999888776665 5
Q ss_pred CCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCC
Q 038576 162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDL 241 (411)
Q Consensus 162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L 241 (411)
....+++.|++..+.-... .+..+++|++| ++.++. ++.++ ...+++|
T Consensus 188 ~~l~~L~~L~l~~N~l~~~----------------------~l~~l~~L~~L------~Ls~N~-l~~ip---~~~l~~L 235 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL----------------------DLNQNIQLTFL------DCSSNK-LTEID---VTPLTQL 235 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC----------------------CCTTCTTCSEE------ECCSSC-CSCCC---CTTCTTC
T ss_pred ccCCCCCEEECcCCcCCee----------------------ccccCCCCCEE------ECcCCc-ccccC---ccccCCC
Confidence 5577888888755322111 12356778888 887765 44443 4577888
Q ss_pred cEEEecCCcCCccCCCCCCCCCCcC----------eEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCC
Q 038576 242 EKLSIFMCDNLTHLVPSSTSFQNLT----------TLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDD 311 (411)
Q Consensus 242 ~~L~l~~c~~l~~~~~~~~~~~~L~----------~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 311 (411)
+.|+++++ .+.+.+ ... +++|+ .|++++|.....++ .+.+++|+.|++++|..++.++....
T Consensus 236 ~~L~l~~N-~l~~~~-~~~-l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~- 307 (457)
T 3bz5_A 236 TYFDCSVN-PLTELD-VST-LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAA- 307 (457)
T ss_dssp SEEECCSS-CCSCCC-CTT-CTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTC-
T ss_pred CEEEeeCC-cCCCcC-HHH-CCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCC-
Confidence 88888874 343332 222 55444 45555555554443 25678888888888887777764211
Q ss_pred CCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccc
Q 038576 312 EGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIF 369 (411)
Q Consensus 312 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~ 369 (411)
.+..+ ....+++|+.|+++++ +++.++ - ..+++|+.|+++++ ++..+
T Consensus 308 -~L~~L--~l~~~~~L~~L~L~~N-~l~~l~--l----~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 308 -GITEL--DLSQNPKLVYLYLNNT-ELTELD--V----SHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp -CCSCC--CCTTCTTCCEEECTTC-CCSCCC--C----TTCTTCSEEECCSS-CCCBC
T ss_pred -cceEe--chhhcccCCEEECCCC-cccccc--c----ccCCcCcEEECCCC-CCCCc
Confidence 11111 2334566666666664 455541 1 33688888888773 45443
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=2.5e-21 Score=195.61 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=113.6
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++++|..+. .++++|+|++|.++. +.+|.++++|++|+|++|.|+.+|+ +|+++++|++|+|++ +.++.+|.+
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALG 118 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECGG
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC-CcCCCCCHH
Confidence 4678887664 478999999999988 4679999999999999999998865 588999999999999 578889887
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc--CCcccccCCCCcEEEEEecCC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT--LPRDLSFFKMLQRYRILIGDS 155 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~i~~~~~ 155 (411)
+++++++|++|++++|.+.. .....++++++|++|++++|.+.. .|..++.+++|++|++..+..
T Consensus 119 ~f~~L~~L~~L~Ls~N~l~~------------l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 119 AFSGLSSLQKLVAVETNLAS------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GGTTCTTCCEEECTTSCCCC------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred HhcCCCCCCEEECCCCcCCC------------CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 78999999999999998764 222457888999999999887554 466777888999998876554
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.2e-21 Score=181.80 Aligned_cols=210 Identities=21% Similarity=0.272 Sum_probs=170.6
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
.++.+|..+.++.+|++|++++|.++. |..++++++|++|++++|.++.+|..++++++|++|++++|+....+|.. +
T Consensus 92 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~-~ 170 (328)
T 4fcg_A 92 PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP-L 170 (328)
T ss_dssp CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC-S
T ss_pred CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChh-H
Confidence 467899999999999999999999989 88899999999999999999999999999999999999999889988876 4
Q ss_pred c---------CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576 81 S---------SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 151 (411)
Q Consensus 81 ~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 151 (411)
. .+++|++|++++|.+.. .+..+.++++|++|++++|....+|..+..+++|+.|+++
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~~-------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIRS-------------LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCCC-------------CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred hhccchhhhccCCCCCEEECcCCCcCc-------------chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 4 49999999999998752 3477899999999999999988888888777777777654
Q ss_pred ecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccc
Q 038576 152 IGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIF 231 (411)
Q Consensus 152 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~ 231 (411)
++.....++
T Consensus 238 -----------------------------------------------------------------------~n~~~~~~p 246 (328)
T 4fcg_A 238 -----------------------------------------------------------------------GCTALRNYP 246 (328)
T ss_dssp -----------------------------------------------------------------------TCTTCCBCC
T ss_pred -----------------------------------------------------------------------CCcchhhhH
Confidence 222111111
Q ss_pred cccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccc
Q 038576 232 KQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVC 299 (411)
Q Consensus 232 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 299 (411)
.....+++|++|++++|+.....+.....+++|+.|++++|...+.++. .++.+++|+.+++...
T Consensus 247 -~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 247 -PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVPPH 311 (328)
T ss_dssp -CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECCGG
T ss_pred -HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCCHH
Confidence 1234677788888888777666665555588889999988888887753 4678888888888753
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=1.1e-21 Score=189.92 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=45.1
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC--CccccccccC-------------cEEEeeCCccccchHHhcCCCCCCEEecC
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKL-------------VILALRGSDMEELAGEIGQLTQLRLLNLS 67 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L-------------~~L~L~~~~l~~lp~~i~~l~~L~~L~L~ 67 (411)
+..+|++++++++|++|++++|.+.. |..++++.+| ++|++++|.++.+|.. .++|++|+++
T Consensus 23 l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~ 99 (454)
T 1jl5_A 23 LTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVAS 99 (454)
T ss_dssp -----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECC
T ss_pred hhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEEcc
Confidence 45667777777777777777776543 6666665543 6677776666665542 2566666666
Q ss_pred CCCCccccCcccccCCCCccEEEeccccc
Q 038576 68 KCFELKVIPPNVISSLSRLEELYIGQSPI 96 (411)
Q Consensus 68 ~c~~~~~~~~~~l~~L~~L~~L~l~~~~~ 96 (411)
+ +.++.+|.. +++|++|++++|.+
T Consensus 100 ~-n~l~~lp~~----~~~L~~L~l~~n~l 123 (454)
T 1jl5_A 100 C-NSLTELPEL----PQSLKSLLVDNNNL 123 (454)
T ss_dssp S-SCCSSCCCC----CTTCCEEECCSSCC
T ss_pred C-CcCCccccc----cCCCcEEECCCCcc
Confidence 6 455555532 25566666665554
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.1e-21 Score=180.97 Aligned_cols=246 Identities=14% Similarity=0.166 Sum_probs=153.0
Q ss_pred ccCcEEEecCCcCC---C-CccccccccCcEEEeeC-Cccc-cchHHhcCCCCCCEEecCCCCCcc-ccCcccccCCCCc
Q 038576 14 QNLQTLSLDDCELG---D-MAIIGDLKKLVILALRG-SDME-ELAGEIGQLTQLRLLNLSKCFELK-VIPPNVISSLSRL 86 (411)
Q Consensus 14 ~~L~~L~l~~~~l~---~-~~~l~~l~~L~~L~L~~-~~l~-~lp~~i~~l~~L~~L~L~~c~~~~-~~~~~~l~~L~~L 86 (411)
.+++.|+++++.++ . |..++++++|++|++++ +.+. .+|..++++++|++|++++| .+. .+|.. ++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDF-LSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGG-GGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHH-HhCCCCC
Confidence 46778888888765 3 67788888888888885 6666 67777888888888888884 454 55655 7788888
Q ss_pred cEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC-cCCcccccCC-CCcEEEEEecCCccccCcCCc
Q 038576 87 EELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK-TLPRDLSFFK-MLQRYRILIGDSREYDAWDGI 164 (411)
Q Consensus 87 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~-~L~~L~i~~~~~~~~~~~~~~ 164 (411)
++|++++|.+.. ..+..+.++++|++|++++|.+. .+|..+..+. +|+.|++..+...
T Consensus 128 ~~L~Ls~N~l~~------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-------- 187 (313)
T 1ogq_A 128 VTLDFSYNALSG------------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT-------- 187 (313)
T ss_dssp CEEECCSSEEES------------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE--------
T ss_pred CEEeCCCCccCC------------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee--------
Confidence 888888887764 34467777888888888887755 6677777776 7777776522211
Q ss_pred cceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEE
Q 038576 165 SRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKL 244 (411)
Q Consensus 165 ~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L 244 (411)
. .. ...+..++ |++| ++.++. +.......+..+++|+.|
T Consensus 188 ----~-----------------------~~------~~~~~~l~-L~~L------~Ls~N~-l~~~~~~~~~~l~~L~~L 226 (313)
T 1ogq_A 188 ----G-----------------------KI------PPTFANLN-LAFV------DLSRNM-LEGDASVLFGSDKNTQKI 226 (313)
T ss_dssp ----E-----------------------EC------CGGGGGCC-CSEE------ECCSSE-EEECCGGGCCTTSCCSEE
T ss_pred ----c-----------------------cC------ChHHhCCc-ccEE------ECcCCc-ccCcCCHHHhcCCCCCEE
Confidence 0 00 00011223 6777 776654 343334344567777777
Q ss_pred EecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcccccc
Q 038576 245 SIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVF 324 (411)
Q Consensus 245 ~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 324 (411)
+++++.. ...++....+++|++|++++|.....+ + ..+..+++|+.|+++++.-...++.. . .+
T Consensus 227 ~L~~N~l-~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p-~~l~~l~~L~~L~Ls~N~l~~~ip~~-~------------~l 290 (313)
T 1ogq_A 227 HLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTL-P-QGLTQLKFLHSLNVSFNNLCGEIPQG-G------------NL 290 (313)
T ss_dssp ECCSSEE-CCBGGGCCCCTTCCEEECCSSCCEECC-C-GGGGGCTTCCEEECCSSEEEEECCCS-T------------TG
T ss_pred ECCCCce-eeecCcccccCCCCEEECcCCcccCcC-C-hHHhcCcCCCEEECcCCcccccCCCC-c------------cc
Confidence 7776433 222222333677777777766543333 2 23466777777777776522233221 1 36
Q ss_pred CCCCeeecCCCcCC
Q 038576 325 SELKELNLSNLQSL 338 (411)
Q Consensus 325 ~~L~~L~l~~c~~l 338 (411)
++|+.|++++.+.+
T Consensus 291 ~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 291 QRFDVSAYANNKCL 304 (313)
T ss_dssp GGSCGGGTCSSSEE
T ss_pred cccChHHhcCCCCc
Confidence 66666666665543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=4.6e-20 Score=171.36 Aligned_cols=266 Identities=16% Similarity=0.189 Sum_probs=155.6
Q ss_pred ccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchhh
Q 038576 36 KKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE 115 (411)
Q Consensus 36 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 115 (411)
.++++++++++.++.+|..+. ++|++|++++ +.++.++...++++++|++|++++|.+.. ..+..
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~ 95 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISK------------ISPGA 95 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCC------------BCTTT
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCe------------eCHHH
Confidence 367777777777777765443 5677777777 46666665447777777777777776654 23466
Q ss_pred ccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcc
Q 038576 116 LNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLT 195 (411)
Q Consensus 116 l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (411)
+.++++|++|++++|....+|..+. ++|++|++..+.....+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~------------------------------------ 137 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVR------------------------------------ 137 (330)
T ss_dssp TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBC------------------------------------
T ss_pred hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccC------------------------------------
Confidence 7777777777777777666666553 67777777533322100
Q ss_pred cCCCccccccccchhhhchHhhhcccccccccc-ccccccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCC
Q 038576 196 SGGDSEALYTSFKNVENGMEAMMRGINHRRELK-QIFKQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCH 274 (411)
Q Consensus 196 ~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~-~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~ 274 (411)
...+..+++|++| ++.++..-. .........+++|++|+++++. +...+... +++|+.|++++|.
T Consensus 138 -----~~~~~~l~~L~~L------~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~--~~~L~~L~l~~n~ 203 (330)
T 1xku_A 138 -----KSVFNGLNQMIVV------ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNK 203 (330)
T ss_dssp -----HHHHTTCTTCCEE------ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSC
T ss_pred -----HhHhcCCccccEE------ECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc--cccCCEEECCCCc
Confidence 0012245666666 666654211 1222234566777777777643 33332221 4677777777664
Q ss_pred CCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCC
Q 038576 275 GMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPS 354 (411)
Q Consensus 275 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 354 (411)
++.+.+ ..+..+++|+.|+++++. ++.+... .+..+++|++|+++++ .++.+|..- ..+++
T Consensus 204 -l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~-----------~~~~l~~L~~L~L~~N-~l~~lp~~l----~~l~~ 264 (330)
T 1xku_A 204 -ITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNG-----------SLANTPHLRELHLNNN-KLVKVPGGL----ADHKY 264 (330)
T ss_dssp -CCEECT-GGGTTCTTCCEEECCSSC-CCEECTT-----------TGGGSTTCCEEECCSS-CCSSCCTTT----TTCSS
T ss_pred -CCccCH-HHhcCCCCCCEEECCCCc-CceeChh-----------hccCCCCCCEEECCCC-cCccCChhh----ccCCC
Confidence 444322 235667777777777765 4444321 2234677777777776 455553222 23577
Q ss_pred cceEeecCCCCCccccCCCC-------CCCCceEEEEeccc
Q 038576 355 LERLVVNRCPNMKIFSEGEL-------STPKLQKVQMSLVD 388 (411)
Q Consensus 355 L~~L~i~~C~~l~~~p~~~~-------~~~~L~~l~l~~~c 388 (411)
|++|++.++ .+..++...+ ..++|+.+++.+|.
T Consensus 265 L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 265 IQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 777777774 4666654332 23566777775443
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=3.7e-20 Score=178.96 Aligned_cols=232 Identities=17% Similarity=0.233 Sum_probs=146.7
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .++++|++++|.++. +..|.++++|++|++++|.++.++ ..+.++++|++|++++ +.++.++..
T Consensus 54 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 130 (440)
T 3zyj_A 54 NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNG 130 (440)
T ss_dssp CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS-SCCSSCCTT
T ss_pred CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC-CcCCeeCHh
Confidence 3566776654 577888888888776 567778888888888888777654 4577788888888888 577777766
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCc-ccccCCCCcEEEEEecCCc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPR-DLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~l~~~~~L~~L~i~~~~~~ 156 (411)
.+..+++|++|++++|.+.. .....+.++++|++|+++++. ...++. .+..+++|++|++..+...
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIES------------IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCE------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred HhhccccCceeeCCCCcccc------------cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 67788888888888877653 223567777888888887743 444444 3566777777777644444
Q ss_pred cccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576 157 EYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS 236 (411)
Q Consensus 157 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~ 236 (411)
.++++. .+++|++| ++.++. +..+....+.
T Consensus 199 ~~~~~~-------------------------------------------~l~~L~~L------~Ls~N~-l~~~~~~~~~ 228 (440)
T 3zyj_A 199 EIPNLT-------------------------------------------PLIKLDEL------DLSGNH-LSAIRPGSFQ 228 (440)
T ss_dssp SCCCCT-------------------------------------------TCSSCCEE------ECTTSC-CCEECTTTTT
T ss_pred cccccC-------------------------------------------CCcccCEE------ECCCCc-cCccChhhhc
Confidence 333222 34566666 666653 4444444455
Q ss_pred CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
.+++|++|+++++....-.......+++|+.|++++| .++.++. ..+..+++|+.|++.+++
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPH-DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCT-TTTSSCTTCCEEECCSSC
T ss_pred cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccCh-hHhccccCCCEEEcCCCC
Confidence 6666777777664322222222333666777777665 3444422 234556677777766654
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=4.7e-20 Score=172.99 Aligned_cols=276 Identities=20% Similarity=0.132 Sum_probs=166.8
Q ss_pred hccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccE
Q 038576 11 GLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEE 88 (411)
Q Consensus 11 ~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~ 88 (411)
..|....+.+.+++.++. |..+. ++|++|++++|.++.+|. .++++++|++|++++ +.++.++...++++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS-NGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCC-CccCccCHhhcCCCCCCCE
Confidence 345566667777777777 65554 478888888888887765 577888888888888 4677776555788888888
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEecCCccccCcCCccc
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIGDSREYDAWDGISR 166 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~~~~~~~~~~~~~~ 166 (411)
|++++|.+.. .....+.++++|++|++++|....+|. .+..+++|++|++..+.
T Consensus 105 L~Ls~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------ 160 (353)
T 2z80_A 105 LDLSYNYLSN------------LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------ 160 (353)
T ss_dssp EECCSSCCSS------------CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS------------
T ss_pred EECCCCcCCc------------CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc------------
Confidence 8888887753 222447778888888888887777765 45667777777665332
Q ss_pred eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576 167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI 246 (411)
Q Consensus 167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l 246 (411)
.+..+.......+++|++|++
T Consensus 161 -----------------------------------------------------------~~~~~~~~~~~~l~~L~~L~l 181 (353)
T 2z80_A 161 -----------------------------------------------------------TFTKIQRKDFAGLTFLEELEI 181 (353)
T ss_dssp -----------------------------------------------------------SCCEECTTTTTTCCEEEEEEE
T ss_pred -----------------------------------------------------------cccccCHHHccCCCCCCEEEC
Confidence 122222222234455556666
Q ss_pred cCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576 247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE 326 (411)
Q Consensus 247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (411)
+++......+.....+++|++|++++|. ++.+ +......+++|+.|+++++. ++........ .....+.
T Consensus 182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~--------~~~~~~~ 250 (353)
T 2z80_A 182 DASDLQSYEPKSLKSIQNVSHLILHMKQ-HILL-LEIFVDVTSSVECLELRDTD-LDTFHFSELS--------TGETNSL 250 (353)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSC-STTH-HHHHHHHTTTEEEEEEESCB-CTTCCCC--------------CCCC
T ss_pred CCCCcCccCHHHHhccccCCeecCCCCc-cccc-hhhhhhhcccccEEECCCCc-cccccccccc--------cccccch
Confidence 5543222222233336677777777665 3443 23344557788888887765 4443221111 1122455
Q ss_pred CCeeecCCCcCCceeccC--CCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEec
Q 038576 327 LKELNLSNLQSLTSFSCS--GNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMSL 386 (411)
Q Consensus 327 L~~L~l~~c~~l~~~~~~--~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~~ 386 (411)
++.+++.++. +.+.... +... ..+++|++|+++++ ++..+|.+. ..+++|++|++.+
T Consensus 251 l~~l~L~~~~-l~~~~l~~l~~~l-~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 251 IKKFTFRNVK-ITDESLFQVMKLL-NQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CCEEEEESCB-CCHHHHHHHHHHH-HTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhcccccccc-ccCcchhhhHHHH-hcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeC
Confidence 6666666652 3221000 0001 24578888888885 677788765 5788888888853
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=3.2e-20 Score=179.98 Aligned_cols=231 Identities=17% Similarity=0.202 Sum_probs=132.3
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNV 79 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~ 79 (411)
++.+|..+. .++++|++++|.++. +..|.++++|++|++++|.++.++ ..+.++++|++|++++ +.++.++...
T Consensus 66 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~ 142 (452)
T 3zyi_A 66 LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSGA 142 (452)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTTT
T ss_pred cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC-CcCCccChhh
Confidence 455565443 467777777777666 456667777777777777666554 4566677777777777 4566666555
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCc-ccccCCCCcEEEEEecCCcc
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPR-DLSFFKMLQRYRILIGDSRE 157 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~-~l~~~~~L~~L~i~~~~~~~ 157 (411)
++.+++|++|++++|.+.. .....+.++++|++|++++|. ...++. .+..+++|+.|+++.+....
T Consensus 143 ~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIES------------IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSSCTTCCEEECCSCCCCE------------ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred hcccCCCCEEECCCCCcce------------eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 6667777777777776543 222456666777777776633 444443 34556666666665444332
Q ss_pred ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576 158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN 237 (411)
Q Consensus 158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~ 237 (411)
++.+ ..+++|++| ++.++. +..+....+..
T Consensus 211 ~~~~-------------------------------------------~~l~~L~~L------~Ls~N~-l~~~~~~~~~~ 240 (452)
T 3zyi_A 211 MPNL-------------------------------------------TPLVGLEEL------EMSGNH-FPEIRPGSFHG 240 (452)
T ss_dssp CCCC-------------------------------------------TTCTTCCEE------ECTTSC-CSEECGGGGTT
T ss_pred cccc-------------------------------------------cccccccEE------ECcCCc-CcccCcccccC
Confidence 2222 234556666 666554 44444444456
Q ss_pred CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 238 AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 238 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
+++|++|+++++......+.....+++|+.|++++| .++.++. ..+..+++|+.|++.+++
T Consensus 241 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPH-DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TSSTTCTTCCEEECCSSC
T ss_pred ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccCh-HHhccccCCCEEEccCCC
Confidence 666666666664322222222333666666666665 3444422 234556666666666553
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=5.7e-21 Score=176.09 Aligned_cols=233 Identities=21% Similarity=0.179 Sum_probs=180.3
Q ss_pred CCChhhhccccCcEEEecC-CcCCC--CccccccccCcEEEeeCCccc-cchHHhcCCCCCCEEecCCCCCcc-ccCccc
Q 038576 5 ALPSSLGLLQNLQTLSLDD-CELGD--MAIIGDLKKLVILALRGSDME-ELAGEIGQLTQLRLLNLSKCFELK-VIPPNV 79 (411)
Q Consensus 5 ~lp~~l~~l~~L~~L~l~~-~~l~~--~~~l~~l~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~c~~~~-~~~~~~ 79 (411)
.+|..++++.+|++|++++ |.+.. |..++++++|++|++++|.++ .+|..++++++|++|++++| .+. .+|..
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~- 144 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPS- 144 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGG-
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChH-
Confidence 5899999999999999996 77765 888999999999999999998 88889999999999999994 566 66766
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCC-CCCEEEEeeccCC-cCCcccccCCCCcEEEEEecCCcc
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLS-KLTSLEILIQDEK-TLPRDLSFFKMLQRYRILIGDSRE 157 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~i~~~~~~~ 157 (411)
++.+++|++|++++|.+.. ..+..+.+++ +|++|++++|... .+|..+..++ |+.|+++.+....
T Consensus 145 ~~~l~~L~~L~L~~N~l~~------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISG------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp GGGCTTCCEEECCSSCCEE------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred HhcCCCCCeEECcCCcccC------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 8999999999999999875 4457888888 9999999999855 6777777776 9998876332110
Q ss_pred ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576 158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN 237 (411)
Q Consensus 158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~ 237 (411)
. ....+..+++|++| ++.++.-....+. ...
T Consensus 212 ~-----------------------------------------~~~~~~~l~~L~~L------~L~~N~l~~~~~~--~~~ 242 (313)
T 1ogq_A 212 D-----------------------------------------ASVLFGSDKNTQKI------HLAKNSLAFDLGK--VGL 242 (313)
T ss_dssp C-----------------------------------------CGGGCCTTSCCSEE------ECCSSEECCBGGG--CCC
T ss_pred c-----------------------------------------CCHHHhcCCCCCEE------ECCCCceeeecCc--ccc
Confidence 0 00112356788888 8888763222322 457
Q ss_pred CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccc
Q 038576 238 AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITE 304 (411)
Q Consensus 238 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 304 (411)
+++|++|+++++......+.....+++|+.|++++|.....++.. ..+++|+.+++.+++.+..
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSSEEES
T ss_pred cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC---ccccccChHHhcCCCCccC
Confidence 899999999986543344444455899999999998655555432 7789999999998875543
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=3.4e-19 Score=172.45 Aligned_cols=305 Identities=15% Similarity=0.124 Sum_probs=171.8
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
++.+|.. ..+|++|++++|.++. |.. ..+|++|++++|.++.+|.. .++|++|++++ +.++.+| + ++
T Consensus 83 l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~-n~l~~lp-~-~~ 150 (454)
T 1jl5_A 83 LSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN-NQLEKLP-E-LQ 150 (454)
T ss_dssp CSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS-SCCSSCC-C-CT
T ss_pred cccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcC-CCCCCCc-c-cC
Confidence 4455542 3578888888888777 433 36778888888777765432 15778888877 4666677 3 77
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCc
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAW 161 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~ 161 (411)
++++|++|++++|.+.. +| .. ..+|++|++++|....+| .++.+++|++|++..+....++.+
T Consensus 151 ~l~~L~~L~l~~N~l~~--lp-----------~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~ 213 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKK--LP-----------DL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL 213 (454)
T ss_dssp TCTTCCEEECCSSCCSC--CC-----------CC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC
T ss_pred CCCCCCEEECCCCcCcc--cC-----------CC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC
Confidence 78888888887776642 22 11 136666666666665555 456666666666665555444433
Q ss_pred CCccceeEEEecCCcccccccccccccccchhcccCCCccc-cccccchhhhchHhhhccccccccccccccccccCCCC
Q 038576 162 DGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEA-LYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKD 240 (411)
Q Consensus 162 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~ 240 (411)
..+++.|++.++....+. .+..++.++.+........ .....++|++| ++.++. ++.++. .+++
T Consensus 214 --~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L------~l~~N~-l~~l~~----~~~~ 278 (454)
T 1jl5_A 214 --PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPDLPPSLEAL------NVRDNY-LTDLPE----LPQS 278 (454)
T ss_dssp --CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCSCCTTCCEE------ECCSSC-CSCCCC----CCTT
T ss_pred --cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccccccccCEE------ECCCCc-ccccCc----ccCc
Confidence 345666666554322222 2334444444432222111 01134678888 887765 444433 3478
Q ss_pred CcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcc
Q 038576 241 LEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQD 320 (411)
Q Consensus 241 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 320 (411)
|++|+++++. +.+.+.. .++|+.|++++|. ++.++ ...++|+.|+++++. +..++.
T Consensus 279 L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N~-l~~i~-----~~~~~L~~L~Ls~N~-l~~lp~------------- 334 (454)
T 1jl5_A 279 LTFLDVSENI-FSGLSEL---PPNLYYLNASSNE-IRSLC-----DLPPSLEELNVSNNK-LIELPA------------- 334 (454)
T ss_dssp CCEEECCSSC-CSEESCC---CTTCCEEECCSSC-CSEEC-----CCCTTCCEEECCSSC-CSCCCC-------------
T ss_pred CCEEECcCCc-cCcccCc---CCcCCEEECcCCc-CCccc-----CCcCcCCEEECCCCc-cccccc-------------
Confidence 8888888743 4433221 3678888887764 33332 112578888888765 444432
Q ss_pred ccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCc--cccCCCCCC-------------CCceEEEEe
Q 038576 321 EIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMK--IFSEGELST-------------PKLQKVQMS 385 (411)
Q Consensus 321 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~-------------~~L~~l~l~ 385 (411)
.+++|+.|+++++ .++.+|. . +++|++|+++++.--. .+|.++..+ ++|+.|+++
T Consensus 335 --~~~~L~~L~L~~N-~l~~lp~---~----l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 335 --LPPRLERLIASFN-HLAEVPE---L----PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp --CCTTCCEEECCSS-CCSCCCC---C----CTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------
T ss_pred --cCCcCCEEECCCC-ccccccc---h----hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECC
Confidence 1577888888776 5666632 2 4778888887754222 345544433 677777775
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=7.8e-20 Score=171.47 Aligned_cols=261 Identities=16% Similarity=0.164 Sum_probs=183.6
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|++|++++|.++. + ..+.++++|++|++++|.++.++ ..++++++|++|++++ +.++.++..
T Consensus 42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~ 118 (353)
T 2z80_A 42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSS 118 (353)
T ss_dssp TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHH
T ss_pred Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHh
Confidence 4678888765 489999999999998 4 47999999999999999999774 5699999999999999 688899887
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCC-cccccCCCCcEEEEEecCCc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLP-RDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~l~~~~~L~~L~i~~~~~~ 156 (411)
.++++++|++|++++|.+.. ++ ....+.++++|++|++++|. ...++ ..+..+++|++|++..+...
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~--l~---------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKT--LG---------ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSS--SC---------SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred HhCCCccCCEEECCCCCCcc--cC---------chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 78999999999999998763 11 11368889999999999984 55554 46788899999999866544
Q ss_pred cccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576 157 EYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS 236 (411)
Q Consensus 157 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~ 236 (411)
.... ..+..+++|++| ++.++. +..++.....
T Consensus 188 ~~~~-----------------------------------------~~l~~l~~L~~L------~l~~n~-l~~~~~~~~~ 219 (353)
T 2z80_A 188 SYEP-----------------------------------------KSLKSIQNVSHL------ILHMKQ-HILLLEIFVD 219 (353)
T ss_dssp EECT-----------------------------------------TTTTTCSEEEEE------EEECSC-STTHHHHHHH
T ss_pred ccCH-----------------------------------------HHHhccccCCee------cCCCCc-cccchhhhhh
Confidence 2100 011245667777 776655 3444433334
Q ss_pred CCCCCcEEEecCCcCCccCCC----CCCCCCCcCeEeecCCCCCcccc--chHhhhccccccEEeEcccccccccccccC
Q 038576 237 NAKDLEKLSIFMCDNLTHLVP----SSTSFQNLTTLTVWGCHGMINVL--TSSTARSLVRLRQMTIKVCVMITEIVADED 310 (411)
Q Consensus 237 ~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 310 (411)
.+++|+.|+++++. +..... .....+.++.++++++..-..-. ....+..+++|+.|+++++. ++.++...
T Consensus 220 ~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~- 296 (353)
T 2z80_A 220 VTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGI- 296 (353)
T ss_dssp HTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTT-
T ss_pred hcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHH-
Confidence 57888888888753 322211 11225667788887764322100 01235678888888888875 66554432
Q ss_pred CCCCCccCccccccCCCCeeecCCCcC
Q 038576 311 DEGDNYAAQDEIVFSELKELNLSNLQS 337 (411)
Q Consensus 311 ~~~~~~~~~~~~~~~~L~~L~l~~c~~ 337 (411)
+..+++|++|++++++-
T Consensus 297 ----------~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 297 ----------FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp ----------TTTCTTCCEEECCSSCB
T ss_pred ----------HhcCCCCCEEEeeCCCc
Confidence 23478888888888753
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=4.3e-19 Score=177.21 Aligned_cols=252 Identities=20% Similarity=0.164 Sum_probs=163.3
Q ss_pred ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
.++++|+++++.++. |..+. ++|++|++++|.++.+|. .+++|++|++++ +.++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSG-NQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECS-CCCSCCCC----CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCC-CcCCcCCC----CCCCCCEEECc
Confidence 479999999999998 77665 799999999999998887 678999999999 57888886 67999999999
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL 172 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~ 172 (411)
+|.+.. ++ . .+++|+.|++++|.+..+|.. +++|++|+++.+....++.. +
T Consensus 110 ~N~l~~--l~-----------~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~--~-------- 160 (622)
T 3g06_A 110 SNPLTH--LP-----------A---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL--P-------- 160 (622)
T ss_dssp SCCCCC--CC-----------C---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC--C--------
T ss_pred CCcCCC--CC-----------C---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc--c--------
Confidence 998753 22 2 568899999999998888864 48899998876654433321 2
Q ss_pred cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCC
Q 038576 173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l 252 (411)
.+|+.| .+.++. ++.++ ..+++|+.|+++++ .+
T Consensus 161 -----------------------------------~~L~~L------~L~~N~-l~~l~----~~~~~L~~L~Ls~N-~l 193 (622)
T 3g06_A 161 -----------------------------------SELCKL------WAYNNQ-LTSLP----MLPSGLQELSVSDN-QL 193 (622)
T ss_dssp -----------------------------------TTCCEE------ECCSSC-CSCCC----CCCTTCCEEECCSS-CC
T ss_pred -----------------------------------CCCCEE------ECCCCC-CCCCc----ccCCCCcEEECCCC-CC
Confidence 344444 444433 33333 23456666666653 23
Q ss_pred ccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeec
Q 038576 253 THLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNL 332 (411)
Q Consensus 253 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 332 (411)
..++.. +++|+.|++++|. ++.++ ..+++|+.|++++|. ++.++. .+++|+.|++
T Consensus 194 ~~l~~~---~~~L~~L~L~~N~-l~~l~-----~~~~~L~~L~Ls~N~-L~~lp~---------------~l~~L~~L~L 248 (622)
T 3g06_A 194 ASLPTL---PSELYKLWAYNNR-LTSLP-----ALPSGLKELIVSGNR-LTSLPV---------------LPSELKELMV 248 (622)
T ss_dssp SCCCCC---CTTCCEEECCSSC-CSSCC-----CCCTTCCEEECCSSC-CSCCCC---------------CCTTCCEEEC
T ss_pred CCCCCc---cchhhEEECcCCc-ccccC-----CCCCCCCEEEccCCc-cCcCCC---------------CCCcCcEEEC
Confidence 332221 4566666665543 33332 123566666666553 444331 2456666666
Q ss_pred CCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEEEEe
Q 038576 333 SNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 333 ~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~l~ 385 (411)
+++ .++.+|. . +++|+.|++++| .+..+|..+..+++|+.|+++
T Consensus 249 s~N-~L~~lp~---~----~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 249 SGN-RLTSLPM---L----PSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp CSS-CCSCCCC---C----CTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECC
T ss_pred CCC-CCCcCCc---c----cccCcEEeCCCC-CCCcCCHHHhhccccCEEEec
Confidence 664 4555522 1 356666666664 455666555566666666664
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=7.6e-19 Score=170.30 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=71.1
Q ss_pred CcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
.+.++.++..++. |..+. +++++|++++|.++.+ |..++++++|++|++++ +.+..++...+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCC-CccCCcChhhccCcccCCEEECCC
Confidence 3455666555665 54443 4667777777766654 34566677777777766 456666544466667777777766
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEE
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL 151 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~ 151 (411)
|.+.. .....+.++++|++|++++|.+..++. .+..+++|++|++.
T Consensus 133 n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 133 NWLTV------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp SCCSB------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCc------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence 66543 222445666666666666666555544 34445555555543
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.5e-19 Score=164.35 Aligned_cols=125 Identities=22% Similarity=0.263 Sum_probs=59.8
Q ss_pred ccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576 14 QNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY 90 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~ 90 (411)
.+|++|++++|.++. +..+.++++|++|++++|.++.+ |..++++++|++|++++|..++.++...+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355555555555554 23455555555555555555543 334555555555555553334444333355555555555
Q ss_pred ecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEE
Q 038576 91 IGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRI 150 (411)
Q Consensus 91 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i 150 (411)
+++|.+.. ..+..+.++++|++|++++|....++.. +..+++|++|++
T Consensus 112 l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 112 LDRCGLQE------------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CTTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcCCE------------ECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 55554432 1223444555555555555544444332 333444444443
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=7.3e-19 Score=169.84 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=69.5
Q ss_pred CcEEEecCCcCCC-CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
.+.++.++..++. |..+. .++++|++++|.++.++ ..++++++|++|++++ +.+..++...+.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS-SCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC-CcCCccChhhccCCccCCEEECCC
Confidence 3455555555555 54443 46666666666666543 4466666666666666 456666544466666666666666
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEE
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRIL 151 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~ 151 (411)
|.+.. .....+..+++|++|++++|.+..++. .+..+++|++|++.
T Consensus 122 n~l~~------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~ 168 (440)
T 3zyj_A 122 NRLTT------------IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168 (440)
T ss_dssp SCCSS------------CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CcCCe------------eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence 65543 122345666666666666666555544 34455555555543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=3.6e-19 Score=163.53 Aligned_cols=234 Identities=18% Similarity=0.177 Sum_probs=121.2
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC-Cc-cccccccCcEEEeeCCccccc---hHHhcCCCCCCEEecCCCCCccccCc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD-MA-IIGDLKKLVILALRGSDMEEL---AGEIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~-~~-~l~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
++.+|..+. .+|++|++++|.++. +. .++++++|++|++++|.++.+ |..+..+++|++|++++ +.+..+|.
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~ 95 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSS 95 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS-CSEEEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC-CccccChh
Confidence 445554433 456666666666655 32 355666666666666655533 44555566666666666 35555555
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCc
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~ 156 (411)
. +..+++|++|++++|.+.. + .....+.++++|++|++++|.....+ ..+..+
T Consensus 96 ~-~~~l~~L~~L~l~~n~l~~--~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-------------- 149 (306)
T 2z66_A 96 N-FLGLEQLEHLDFQHSNLKQ--M---------SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-------------- 149 (306)
T ss_dssp E-EETCTTCCEEECTTSEEES--S---------TTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC--------------
T ss_pred h-cCCCCCCCEEECCCCcccc--c---------ccchhhhhccCCCEEECCCCcCCccchhhcccC--------------
Confidence 4 5566666666666665532 0 01134555555666665555433221 223333
Q ss_pred cccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccccc
Q 038576 157 EYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESS 236 (411)
Q Consensus 157 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~ 236 (411)
++|++| .+.++.-.....+....
T Consensus 150 ---------------------------------------------------~~L~~L------~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 150 ---------------------------------------------------SSLEVL------KMAGNSFQENFLPDIFT 172 (306)
T ss_dssp ---------------------------------------------------TTCCEE------ECTTCEEGGGEECSCCT
T ss_pred ---------------------------------------------------cCCCEE------ECCCCccccccchhHHh
Confidence 444444 44444321112222334
Q ss_pred CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCc
Q 038576 237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNY 316 (411)
Q Consensus 237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 316 (411)
.+++|++|+++++.-....+.....+++|+.|++++|. ++.++.. .+..+++|+.|+++++. +......
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~-------- 241 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQ-------- 241 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTSC-CCBCSSS--------
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChh-hccCcccCCEeECCCCC-CcccCHH--------
Confidence 56667777776643222222233336777777776664 3333222 24566777777777765 3333221
Q ss_pred cCcccccc-CCCCeeecCCCc
Q 038576 317 AAQDEIVF-SELKELNLSNLQ 336 (411)
Q Consensus 317 ~~~~~~~~-~~L~~L~l~~c~ 336 (411)
.+..+ ++|+.|++++++
T Consensus 242 ---~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 242 ---ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ---SCCCCCTTCCEEECTTCC
T ss_pred ---HHHhhhccCCEEEccCCC
Confidence 11234 367777777654
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=2.1e-18 Score=172.21 Aligned_cols=244 Identities=19% Similarity=0.132 Sum_probs=165.1
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
.++.+|..+. .+|++|++++|.++. |. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|.
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~l~~--- 118 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-NPLTHLPA--- 118 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-CCCCCCCC---
T ss_pred CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-CcCCCCCC---
Confidence 4678888776 799999999999998 55 57899999999999999887 789999999999 67888876
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA 160 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~ 160 (411)
.+++|++|++++|.+.. +| . .+++|++|++++|.+..+|. .+.+|+.|.+..+....++
T Consensus 119 -~l~~L~~L~L~~N~l~~--lp-----------~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~- 177 (622)
T 3g06_A 119 -LPSGLCKLWIFGNQLTS--LP-----------V---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP- 177 (622)
T ss_dssp -CCTTCCEEECCSSCCSC--CC-----------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC-
T ss_pred -CCCCcCEEECCCCCCCc--CC-----------C---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc-
Confidence 57899999999998763 32 2 24889999999999888875 3578999998877666555
Q ss_pred cCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCC
Q 038576 161 WDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKD 240 (411)
Q Consensus 161 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~ 240 (411)
..+.++..|++..+... +++ ...++|+.| .+.++. ++.++. .+++
T Consensus 178 -~~~~~L~~L~Ls~N~l~--------~l~---------------~~~~~L~~L------~L~~N~-l~~l~~----~~~~ 222 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLA--------SLP---------------TLPSELYKL------WAYNNR-LTSLPA----LPSG 222 (622)
T ss_dssp -CCCTTCCEEECCSSCCS--------CCC---------------CCCTTCCEE------ECCSSC-CSSCCC----CCTT
T ss_pred -ccCCCCcEEECCCCCCC--------CCC---------------CccchhhEE------ECcCCc-ccccCC----CCCC
Confidence 22455556655442111 000 012456666 666543 333332 3466
Q ss_pred CcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCcc
Q 038576 241 LEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQD 320 (411)
Q Consensus 241 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 320 (411)
|+.|+++++ .+..++ ..+++|+.|++++| .++.++. .+++|+.|++++|. ++.++..
T Consensus 223 L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~-L~~lp~~------------ 279 (622)
T 3g06_A 223 LKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQ-LTRLPES------------ 279 (622)
T ss_dssp CCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CCSCCGG------------
T ss_pred CCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCC-CCcCCHH------------
Confidence 777777663 344433 22566777777665 3444432 45667777776654 5544432
Q ss_pred ccccCCCCeeecCCCc
Q 038576 321 EIVFSELKELNLSNLQ 336 (411)
Q Consensus 321 ~~~~~~L~~L~l~~c~ 336 (411)
+..+++|+.|++++++
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 2236667777777654
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=3e-19 Score=164.06 Aligned_cols=214 Identities=19% Similarity=0.151 Sum_probs=159.5
Q ss_pred CCCCCChh-hhccccCcEEEecCCcCCC----CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccC
Q 038576 2 HLLALPSS-LGLLQNLQTLSLDDCELGD----MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIP 76 (411)
Q Consensus 2 ~l~~lp~~-l~~l~~L~~L~l~~~~l~~----~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~ 76 (411)
.++.+|.. |.++.+|++|++++|.++. +..+..+++|++|++++|.++.+|..+..+++|++|++++ +.+..++
T Consensus 39 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~ 117 (306)
T 2z66_A 39 KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMS 117 (306)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTT-SEEESST
T ss_pred ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCC-Ccccccc
Confidence 35678865 7999999999999999875 4667789999999999999999998899999999999999 6788776
Q ss_pred c-ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc--CCcccccCCCCcEEEEEec
Q 038576 77 P-NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT--LPRDLSFFKMLQRYRILIG 153 (411)
Q Consensus 77 ~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~i~~~ 153 (411)
. ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.... +|..+..+++|++|+++.+
T Consensus 118 ~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 118 EFSVFLSLRNLIYLDISHTHTRV------------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEE------------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred cchhhhhccCCCEEECCCCcCCc------------cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 4 448899999999999998765 344678899999999999998654 6778888899999887644
Q ss_pred CCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccc
Q 038576 154 DSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ 233 (411)
Q Consensus 154 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~ 233 (411)
.....+ ...+..+++|++| ++.++. +..+...
T Consensus 186 ~l~~~~-----------------------------------------~~~~~~l~~L~~L------~L~~N~-l~~~~~~ 217 (306)
T 2z66_A 186 QLEQLS-----------------------------------------PTAFNSLSSLQVL------NMSHNN-FFSLDTF 217 (306)
T ss_dssp CCCEEC-----------------------------------------TTTTTTCTTCCEE------ECTTSC-CSBCCSG
T ss_pred CcCCcC-----------------------------------------HHHhcCCCCCCEE------ECCCCc-cCccChh
Confidence 322110 0012245677777 777765 4444443
Q ss_pred cccCCCCCcEEEecCCcCCccCCCCCCCCC-CcCeEeecCCCCC
Q 038576 234 ESSNAKDLEKLSIFMCDNLTHLVPSSTSFQ-NLTTLTVWGCHGM 276 (411)
Q Consensus 234 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~L~l~~c~~l 276 (411)
....+++|+.|+++++......+.....++ +|+.|++++|+..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 445678888888887543333332333353 7888888777543
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=1e-18 Score=154.52 Aligned_cols=82 Identities=18% Similarity=0.236 Sum_probs=38.1
Q ss_pred cCcEEEecCCcCCC-C-ccccccccCcEEEeeCCc-cccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEE
Q 038576 15 NLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSD-MEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELY 90 (411)
Q Consensus 15 ~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~-l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~ 90 (411)
+|++|++++|.++. + ..++++++|++|++++|+ ++.++. .++++++|++|++++|+.++.++...+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44555555554444 2 234444555555555543 444433 3444455555555443344444433344445555555
Q ss_pred eccccc
Q 038576 91 IGQSPI 96 (411)
Q Consensus 91 l~~~~~ 96 (411)
+++|.+
T Consensus 112 l~~n~l 117 (239)
T 2xwt_C 112 IFNTGL 117 (239)
T ss_dssp EEEECC
T ss_pred CCCCCC
Confidence 544443
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=5.5e-20 Score=169.81 Aligned_cols=263 Identities=13% Similarity=0.080 Sum_probs=165.4
Q ss_pred CcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 16 LQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 16 L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
++..+++++.+.. + ..+..+++|++|++++|.++.++ ..++++++|++|++++ +.+...+. +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT-SCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC-CcCCcchh--hhhcCCCCEEECc
Confidence 4455555555544 2 33445667888888888777554 5677888888888888 45665554 7788888888888
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL 172 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~ 172 (411)
+|.+.. +...++|++|++++|.+..++.. .+++|++|+++.+.....+.
T Consensus 89 ~n~l~~-----------------l~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~------------ 137 (317)
T 3o53_A 89 NNYVQE-----------------LLVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRD------------ 137 (317)
T ss_dssp SSEEEE-----------------EEECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGG------------
T ss_pred CCcccc-----------------ccCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccc------------
Confidence 876632 22347788888887776665543 35667777665443321110
Q ss_pred cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccc-cCCCCCcEEEecCCcC
Q 038576 173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQES-SNAKDLEKLSIFMCDN 251 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~-~~~~~L~~L~l~~c~~ 251 (411)
..+..+++|++| +++++. +..+..... ..+++|++|+++++.
T Consensus 138 -----------------------------~~~~~l~~L~~L------~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~- 180 (317)
T 3o53_A 138 -----------------------------LDEGCRSRVQYL------DLKLNE-IDTVNFAELAASSDTLEHLNLQYNF- 180 (317)
T ss_dssp -----------------------------BCTGGGSSEEEE------ECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred -----------------------------hhhhccCCCCEE------ECCCCC-CCcccHHHHhhccCcCCEEECCCCc-
Confidence 011245677777 777765 444333222 367888888888854
Q ss_pred CccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeee
Q 038576 252 LTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELN 331 (411)
Q Consensus 252 l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 331 (411)
+........ +++|+.|++++|. ++.+++. +..+++|+.|+++++. ++.++... ..+++|+.|+
T Consensus 181 l~~~~~~~~-l~~L~~L~Ls~N~-l~~l~~~--~~~l~~L~~L~L~~N~-l~~l~~~~------------~~l~~L~~L~ 243 (317)
T 3o53_A 181 IYDVKGQVV-FAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK-LVLIEKAL------------RFSQNLEHFD 243 (317)
T ss_dssp CCEEECCCC-CTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC-CCEECTTC------------CCCTTCCEEE
T ss_pred Ccccccccc-cccCCEEECCCCc-CCcchhh--hcccCcccEEECcCCc-ccchhhHh------------hcCCCCCEEE
Confidence 444444433 8889999998874 5555432 5778999999999875 66665432 3478899999
Q ss_pred cCCCcCCceeccCCCcccccCCCcceEeecCCCCCccc
Q 038576 332 LSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIF 369 (411)
Q Consensus 332 l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~ 369 (411)
+++++-.... ..... ..+++|+.+++.+++.++..
T Consensus 244 l~~N~~~~~~--~~~~~-~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 244 LRGNGFHCGT--LRDFF-SKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CTTCCCBHHH--HHHHH-HTCHHHHHHHHHHHHHHHSS
T ss_pred ccCCCccCcC--HHHHH-hccccceEEECCCchhccCC
Confidence 9987533121 11111 34578888888877666543
No 62
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.7e-20 Score=188.12 Aligned_cols=132 Identities=12% Similarity=0.064 Sum_probs=85.9
Q ss_pred ccccCcEEEecCCcCCC--Cccccc-cc-cCcEEEeeCCc-cc--cchHHhcCCCCCCEEecCCCCCccccCc----ccc
Q 038576 12 LLQNLQTLSLDDCELGD--MAIIGD-LK-KLVILALRGSD-ME--ELAGEIGQLTQLRLLNLSKCFELKVIPP----NVI 80 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~~--~~~l~~-l~-~L~~L~L~~~~-l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~----~~l 80 (411)
++.+|++|++++|.+++ +..+.. ++ +|++|++++|. +. .++..+.++++|++|++++| .+.+... ...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHH
Confidence 67778888888777665 455554 33 48888888774 33 34444557788888888885 3332211 124
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEe
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 152 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~ 152 (411)
..+++|++|+++++.+.. + ........+.++++|++|++.+|....++..+..+++|++|.+..
T Consensus 189 ~~~~~L~~L~L~~n~~~~--~------~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAK--I------SPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHCCCCCEEECTTCCCSS--C------CHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred hcCCCccEEEeeccCCCc--c------CHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 567788888887776641 0 001233445677888888888887777777777788888888763
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=4.8e-18 Score=153.60 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=110.1
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++++|..+. .+|++|++++|.++. +..+.++++|++|++++|.++.++. .++++++|++|++++ +.++.++..
T Consensus 18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALG 94 (276)
T ss_dssp CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT-CCCCEECTT
T ss_pred CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC-CccCccChh
Confidence 4567787664 479999999999888 4478889999999999998887765 688899999999999 577777765
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc--CCcccccCCCCcEEEEEecC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT--LPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~i~~~~ 154 (411)
.+.++++|++|++++|.+.. .....+.++++|++|++++|.... +|..+..+++|++|+++.+.
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLAS------------LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCC------------STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hhcCCccccEEECCCCCccc------------cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 58899999999999988764 222457888999999999988665 57778888888888876443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=2.8e-19 Score=165.13 Aligned_cols=246 Identities=14% Similarity=0.099 Sum_probs=164.0
Q ss_pred hhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 10 LGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
+..+.+|++|++++|.++. +..++++++|++|++++|.++..++ ++.+++|++|++++ +.++.++ ..++|+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~-n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN-NYVQELL-----VGPSIE 102 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS-SEEEEEE-----ECTTCC
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC-Ccccccc-----CCCCcC
Confidence 4456799999999999988 4689999999999999999987665 89999999999999 5677655 348999
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccc
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISR 166 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~ 166 (411)
+|++++|.+.. .....+++|++|++++|....++. .+..+++|++|+++.+.....+..
T Consensus 103 ~L~l~~n~l~~---------------~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----- 162 (317)
T 3o53_A 103 TLHAANNNISR---------------VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA----- 162 (317)
T ss_dssp EEECCSSCCSE---------------EEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG-----
T ss_pred EEECCCCccCC---------------cCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH-----
Confidence 99999998865 222346889999999999877755 677789999998875443321100
Q ss_pred eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576 167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI 246 (411)
Q Consensus 167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l 246 (411)
.....+++|++| +++++. ++.++. ...+++|++|++
T Consensus 163 -----------------------------------~~~~~l~~L~~L------~L~~N~-l~~~~~--~~~l~~L~~L~L 198 (317)
T 3o53_A 163 -----------------------------------ELAASSDTLEHL------NLQYNF-IYDVKG--QVVFAKLKTLDL 198 (317)
T ss_dssp -----------------------------------GGGGGTTTCCEE------ECTTSC-CCEEEC--CCCCTTCCEEEC
T ss_pred -----------------------------------HHhhccCcCCEE------ECCCCc-Cccccc--ccccccCCEEEC
Confidence 001134566666 666655 444432 124677777777
Q ss_pred cCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576 247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE 326 (411)
Q Consensus 247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (411)
+++ .+...++....+++|+.|++++|. ++.++. .+..+++|+.|++++++-....... ....+++
T Consensus 199 s~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~~~-----------~~~~~~~ 263 (317)
T 3o53_A 199 SSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEK--ALRFSQNLEHFDLRGNGFHCGTLRD-----------FFSKNQR 263 (317)
T ss_dssp CSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECT--TCCCCTTCCEEECTTCCCBHHHHHH-----------HHHTCHH
T ss_pred CCC-cCCcchhhhcccCcccEEECcCCc-ccchhh--HhhcCCCCCEEEccCCCccCcCHHH-----------HHhcccc
Confidence 764 333443334346777777776663 444432 2456677777777776522111111 2223666
Q ss_pred CCeeecCCCcCCcee
Q 038576 327 LKELNLSNLQSLTSF 341 (411)
Q Consensus 327 L~~L~l~~c~~l~~~ 341 (411)
|+.|++.+++.++..
T Consensus 264 L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 264 VQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred ceEEECCCchhccCC
Confidence 777776655555444
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.8e-17 Score=150.58 Aligned_cols=219 Identities=14% Similarity=0.130 Sum_probs=160.1
Q ss_pred cEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccc
Q 038576 17 QTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQS 94 (411)
Q Consensus 17 ~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~ 94 (411)
++++.+++.++. |..+ .++|++|+++++.++.++. .++++++|++|++++ +.++.++...++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCC
Confidence 678898888888 6544 4699999999999997774 589999999999999 5788885555999999999999999
Q ss_pred c-cccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecCCccccCcCCccceeEEEe
Q 038576 95 P-IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKL 172 (411)
Q Consensus 95 ~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~ 172 (411)
. +.. ..+..+..+++|++|++++|....+ +..+..+++|++|++..+.....+.
T Consensus 91 ~~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------ 146 (285)
T 1ozn_A 91 AQLRS------------VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD------------ 146 (285)
T ss_dssp TTCCC------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred CCccc------------cCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH------------
Confidence 7 543 2347788999999999999987776 4557788999999886444331110
Q ss_pred cCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCC
Q 038576 173 TNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNL 252 (411)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l 252 (411)
..+..+++|++| ++.++. ++.++...+..+++|++|+++++...
T Consensus 147 -----------------------------~~~~~l~~L~~L------~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 147 -----------------------------DTFRDLGNLTHL------FLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp -----------------------------TTTTTCTTCCEE------ECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------hHhccCCCccEE------ECCCCc-ccccCHHHhcCccccCEEECCCCccc
Confidence 012356778888 887764 55555545567788888888875433
Q ss_pred ccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 253 THLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 253 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
...+.....+++|+.|++++|. ++.++ ...+..+++|+.|++++++
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANN-LSALP-TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-CSCCC-HHHHTTCTTCCEEECCSSC
T ss_pred ccCHhHccCcccccEeeCCCCc-CCcCC-HHHcccCcccCEEeccCCC
Confidence 3223334447888888888774 44443 3346778888888888775
No 66
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=2.7e-19 Score=179.39 Aligned_cols=79 Identities=25% Similarity=0.392 Sum_probs=41.8
Q ss_pred CcEEEecCCc-CCC---CccccccccCcEEEeeCCcccc-----chHHhcCCCCCCEEecCCCCCcc-----ccCccccc
Q 038576 16 LQTLSLDDCE-LGD---MAIIGDLKKLVILALRGSDMEE-----LAGEIGQLTQLRLLNLSKCFELK-----VIPPNVIS 81 (411)
Q Consensus 16 L~~L~l~~~~-l~~---~~~l~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~c~~~~-----~~~~~~l~ 81 (411)
|++|++++|. +.. +....++++|++|++++|.+++ ++....++++|++|+++++ .+. .++. .+.
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~-~~~ 217 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLET-IAR 217 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHH-HHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHH-HHh
Confidence 6666666665 222 2223356666666666665541 3334455666666666663 332 2222 134
Q ss_pred CCCCccEEEeccccc
Q 038576 82 SLSRLEELYIGQSPI 96 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~ 96 (411)
.+++|++|++++|.+
T Consensus 218 ~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCCEEECSSCBG
T ss_pred hCCCCcEEeccCccH
Confidence 566666666666544
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.4e-17 Score=147.21 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=76.9
Q ss_pred cCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc-cccccCcc
Q 038576 25 ELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ-SPIQWGKV 101 (411)
Q Consensus 25 ~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~-~~~~~~~~ 101 (411)
.++. |. +. .+|++|++++|.++.+|. .++++++|++|++++|..++.++...+.++++|++|++++ |.+..
T Consensus 22 ~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--- 95 (239)
T 2xwt_C 22 DIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--- 95 (239)
T ss_dssp SCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE---
T ss_pred CccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE---
Confidence 3666 54 43 388889999888887776 5788888999999885448888775588888888888887 66653
Q ss_pred ccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCc
Q 038576 102 EGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQ 146 (411)
Q Consensus 102 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~ 146 (411)
.....+.++++|++|++++|....+|. +..+++|+
T Consensus 96 ---------i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 96 ---------IDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTD 130 (239)
T ss_dssp ---------ECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCC
T ss_pred ---------cCHHHhCCCCCCCEEeCCCCCCccccc-cccccccc
Confidence 223567778888888888887766665 44555554
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=1.2e-17 Score=163.19 Aligned_cols=83 Identities=13% Similarity=0.100 Sum_probs=50.7
Q ss_pred CCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCc
Q 038576 237 NAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNY 316 (411)
Q Consensus 237 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 316 (411)
.+++|+.|+++++. +.+.++... +++|+.|++++|. ++.+++. +..+++|+.|+++++. +..++...
T Consensus 167 ~l~~L~~L~Ls~N~-l~~~~~~~~-l~~L~~L~Ls~N~-l~~~~~~--~~~l~~L~~L~Ls~N~-l~~lp~~l------- 233 (487)
T 3oja_A 167 SSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSNK-LAFMGPE--FQSAAGVTWISLRNNK-LVLIEKAL------- 233 (487)
T ss_dssp GTTTCCEEECTTSC-CCEEECCCC-CTTCCEEECCSSC-CCEECGG--GGGGTTCSEEECTTSC-CCEECTTC-------
T ss_pred hCCcccEEecCCCc-ccccccccc-CCCCCEEECCCCC-CCCCCHh--HcCCCCccEEEecCCc-Ccccchhh-------
Confidence 56677777777643 444433333 7777777777664 4444332 4667777888777765 55554322
Q ss_pred cCccccccCCCCeeecCCCcC
Q 038576 317 AAQDEIVFSELKELNLSNLQS 337 (411)
Q Consensus 317 ~~~~~~~~~~L~~L~l~~c~~ 337 (411)
..+++|+.|++++++-
T Consensus 234 -----~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 234 -----RFSQNLEHFDLRGNGF 249 (487)
T ss_dssp -----CCCTTCCEEECTTCCB
T ss_pred -----ccCCCCCEEEcCCCCC
Confidence 2367777777777653
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=3.3e-20 Score=180.37 Aligned_cols=135 Identities=22% Similarity=0.290 Sum_probs=78.8
Q ss_pred hhccccCcEEEecCCcCCC------CccccccccCcEEEeeCCcccc-chHH-hcCCC----CCCEEecCCCCCcc----
Q 038576 10 LGLLQNLQTLSLDDCELGD------MAIIGDLKKLVILALRGSDMEE-LAGE-IGQLT----QLRLLNLSKCFELK---- 73 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~------~~~l~~l~~L~~L~L~~~~l~~-lp~~-i~~l~----~L~~L~L~~c~~~~---- 73 (411)
+..+++|++|++++|.+++ +..+..+++|++|++++|.+.+ .+.. ...++ +|++|++++| .++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence 5667777777777777663 3445566777777777777663 2222 23344 5777777774 444
Q ss_pred -ccCcccccCCCCccEEEecccccccCccccccccccccchhh-ccCCCCCCEEEEeeccCCc-----CCcccccCCCCc
Q 038576 74 -VIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDE-LNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQ 146 (411)
Q Consensus 74 -~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~ 146 (411)
.++.. +.++++|++|++++|.+.. ..+ ...... ....++|++|++++|.... ++..+..+++|+
T Consensus 103 ~~l~~~-l~~~~~L~~L~Ls~n~i~~-~~~-------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 103 GVLSST-LRTLPTLQELHLSDNLLGD-AGL-------QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp HHHHHH-TTSCTTCCEEECCSSBCHH-HHH-------HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHH-HccCCceeEEECCCCcCch-HHH-------HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence 23433 6677777777777776543 000 001111 1224567777777776443 234455667777
Q ss_pred EEEEEecC
Q 038576 147 RYRILIGD 154 (411)
Q Consensus 147 ~L~i~~~~ 154 (411)
+|+++.+.
T Consensus 174 ~L~L~~n~ 181 (461)
T 1z7x_W 174 ELTVSNND 181 (461)
T ss_dssp EEECCSSB
T ss_pred EEECcCCC
Confidence 77776544
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.9e-17 Score=151.99 Aligned_cols=196 Identities=21% Similarity=0.236 Sum_probs=132.7
Q ss_pred hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
+.++.+|++|++++|.++..+.+..+++|++|++++|.++.++. ++++++|++|++++ +.++.++. +..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSG-NPLKNVSA--IAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCS-CCCSCCGG--GTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccC-CcCCCchh--hcCCCCCCEE
Confidence 45677888888888888774467788888888888888887776 88888888888888 45777653 7888888888
Q ss_pred EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeE
Q 038576 90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISK 169 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~ 169 (411)
++++|.+.. ...+..+++|++|++++|....++. +..+++|+.|+++
T Consensus 113 ~l~~n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~------------------ 159 (308)
T 1h6u_A 113 DLTSTQITD--------------VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG------------------ 159 (308)
T ss_dssp ECTTSCCCC--------------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC------------------
T ss_pred ECCCCCCCC--------------chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEcc------------------
Confidence 888887643 1237777888888888777666554 5555666666554
Q ss_pred EEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCC
Q 038576 170 LKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMC 249 (411)
Q Consensus 170 L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c 249 (411)
++. +..+.. ...+++|++|+++++
T Consensus 160 -----------------------------------------------------~n~-l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 160 -----------------------------------------------------NAQ-VSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp -----------------------------------------------------SSC-CCCCGG--GTTCTTCCEEECCSS
T ss_pred -----------------------------------------------------CCc-CCCChh--hcCCCCCCEEECCCC
Confidence 321 222222 235666777777764
Q ss_pred cCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccc
Q 038576 250 DNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEI 305 (411)
Q Consensus 250 ~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 305 (411)
.+.+..+.. .+++|+.|++++|. ++++++ +..+++|+.|++++++ +...
T Consensus 184 -~l~~~~~l~-~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 184 -KISDISPLA-SLPNLIEVHLKNNQ-ISDVSP---LANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp -CCCCCGGGG-GCTTCCEEECTTSC-CCBCGG---GTTCTTCCEEEEEEEE-EECC
T ss_pred -ccCcChhhc-CCCCCCEEEccCCc-cCcccc---ccCCCCCCEEEccCCe-eecC
Confidence 333433333 37788888887764 444432 5778888888888876 4443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=3.2e-17 Score=147.70 Aligned_cols=197 Identities=18% Similarity=0.260 Sum_probs=138.2
Q ss_pred cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
+.++++++++.++. |..+. .++++|++++|.++.+|. .++++++|++|++++ +.++.++..++..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECC
Confidence 46788888888777 65554 578888888888887765 577888888888888 57777777656788888888888
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccCcCCccceeEEE
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDAWDGISRISKLK 171 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~ 171 (411)
+|.+.. .....+..+++|++|++++|....++.. +..+++|++|+++.+....++..
T Consensus 94 ~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------- 151 (270)
T 2o6q_A 94 DNKLQA------------LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG---------- 151 (270)
T ss_dssp SSCCCC------------CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT----------
T ss_pred CCcCCc------------CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh----------
Confidence 887754 2235567788888888888887666653 56788888888764443321110
Q ss_pred ecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcC
Q 038576 172 LTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDN 251 (411)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~ 251 (411)
.+..+++|++| .+.++. +..++...+..+++|++|+++++ .
T Consensus 152 -------------------------------~~~~l~~L~~L------~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~ 192 (270)
T 2o6q_A 152 -------------------------------VFDKLTSLKEL------RLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-Q 192 (270)
T ss_dssp -------------------------------TTTTCTTCCEE------ECCSSC-CSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred -------------------------------HccCCccccee------EecCCc-CcEeChhHhccCCCcCEEECCCC-c
Confidence 12245677777 777764 55555545567889999999885 4
Q ss_pred CccCCC-CCCCCCCcCeEeecCCCC
Q 038576 252 LTHLVP-SSTSFQNLTTLTVWGCHG 275 (411)
Q Consensus 252 l~~~~~-~~~~~~~L~~L~l~~c~~ 275 (411)
+...++ ....+++|+.|++++|+-
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 193 LKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCCHHHhccccCCCEEEecCCCe
Confidence 444443 234488999999988763
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=1.1e-16 Score=149.86 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=73.7
Q ss_pred hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
+..|.. ++++-++++++. |..+ ..++++|++++|+|+.+|. .++++++|++|++++|...+.+|.+++.++++++
T Consensus 6 ~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp SSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred ccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 344543 566777777777 6555 2577788888888777775 3677888888888875445666666577777766
Q ss_pred E-EEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc
Q 038576 88 E-LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR 137 (411)
Q Consensus 88 ~-L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 137 (411)
+ +.+..|.+.. ..+..+..+++|+++++++|.+..++.
T Consensus 83 ~~l~~~~N~l~~------------l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 83 EIRIEKANNLLY------------INPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp EEEEEEETTCCE------------ECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred hhhcccCCcccc------------cCchhhhhccccccccccccccccCCc
Confidence 5 3444555543 223566777777777777777665554
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=4.9e-17 Score=146.60 Aligned_cols=127 Identities=21% Similarity=0.362 Sum_probs=81.8
Q ss_pred hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
+.++.+|+.|+++++.++.++.++.+++|++|++++|.++.++ .++++++|++|++++ +.++.++...++.+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTG-NQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCC-CccCccChhHhcCCcCCCEE
Confidence 4566677777777777766556677777777777777776654 566777777777777 46666665556677777777
Q ss_pred EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEE
Q 038576 90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRI 150 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i 150 (411)
++++|.+.. .....+.++++|++|++++|....++.. +..+++|+.|++
T Consensus 115 ~L~~n~l~~------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 115 VLVENQLQS------------LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp ECTTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ECCCCcCCc------------cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 777776653 2224456666777777776665555443 244455555444
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=8.9e-17 Score=150.38 Aligned_cols=229 Identities=16% Similarity=0.141 Sum_probs=165.3
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccc-cchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDME-ELAG-EIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~-~lp~-~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
+++++|..+. .++++|+|++|.++. + ..|.++++|++|+|++|.+. .+|. .+.++++|+++...+++.++.++.
T Consensus 20 ~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 4788998773 689999999999998 5 56899999999999999875 5664 478899988876666589999987
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeec-cCCcCCcc-cccC-CCCcEEEEEecC
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ-DEKTLPRD-LSFF-KMLQRYRILIGD 154 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~-l~~~-~~L~~L~i~~~~ 154 (411)
++++.+++|++|++++|.+.. .....+....++..+++..+ ....++.. +..+ ..++.|++..+.
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKH------------LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSS------------CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred hhhhhcccccccccccccccc------------CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence 779999999999999998864 12234445566778888664 35555543 2333 356666665443
Q ss_pred CccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccccccccccccccc
Q 038576 155 SREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQE 234 (411)
Q Consensus 155 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~ 234 (411)
...++...+ ...+|++| .+.++..++.++...
T Consensus 166 i~~i~~~~f------------------------------------------~~~~L~~l------~l~~~n~l~~i~~~~ 197 (350)
T 4ay9_X 166 IQEIHNSAF------------------------------------------NGTQLDEL------NLSDNNNLEELPNDV 197 (350)
T ss_dssp CCEECTTSS------------------------------------------TTEEEEEE------ECTTCTTCCCCCTTT
T ss_pred ccCCChhhc------------------------------------------cccchhHH------hhccCCcccCCCHHH
Confidence 332221111 23467777 777777777777766
Q ss_pred ccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcc
Q 038576 235 SSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKV 298 (411)
Q Consensus 235 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 298 (411)
+..+++|+.|+++++ .++.+++. . +.+|++|.+.++..++.++. +..+++|+.+++.+
T Consensus 198 f~~l~~L~~LdLs~N-~l~~lp~~-~-~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 FHGASGPVILDISRT-RIHSLPSY-G-LENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TTTEECCSEEECTTS-CCCCCCSS-S-CTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred hccCcccchhhcCCC-CcCccChh-h-hccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 677888888888874 56555443 2 78888888888888888754 47788888888864
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=5.8e-19 Score=177.09 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=33.4
Q ss_pred cCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcc--ccCCCCCCCCceEEEEecccc
Q 038576 324 FSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKI--FSEGELSTPKLQKVQMSLVDE 389 (411)
Q Consensus 324 ~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~--~p~~~~~~~~L~~l~l~~~c~ 389 (411)
+++|+.|++++|. +++. .....+..+++|++|++++|+- .. +......+++|++|+++ +|+
T Consensus 455 ~~~L~~L~L~~~~-i~~~--~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~-~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDL--GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMS-SCS 517 (594)
T ss_dssp CTTCCEEEEESCC-SSHH--HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEE-SSC
T ss_pred chhccEeeccCCC-CcHH--HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeee-CCC
Confidence 5566666666654 3221 0001112368888888888764 32 11122346788888886 554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=1.8e-16 Score=142.67 Aligned_cols=198 Identities=15% Similarity=0.224 Sum_probs=119.9
Q ss_pred cCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccccchhhc
Q 038576 37 KLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDEL 116 (411)
Q Consensus 37 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 116 (411)
+.++++++++.++.+|..+. +++++|++++ +.+..++...++++++|++|++++|.+.. .....+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------i~~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQT------------LPAGIF 81 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCSC------------CCTTTT
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccCe------------eChhhh
Confidence 56777777777777765443 5677777777 46666665457777777777777776653 122445
Q ss_pred cCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcc
Q 038576 117 NNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLT 195 (411)
Q Consensus 117 ~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~ 195 (411)
.++++|++|++++|....++.. +..+++|++|++..+.....+.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------------------- 126 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP----------------------------------- 126 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-----------------------------------
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-----------------------------------
Confidence 6677777777777776666543 4567777777765333221110
Q ss_pred cCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCC-CCCCCCCcCeEeecCCC
Q 038576 196 SGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVP-SSTSFQNLTTLTVWGCH 274 (411)
Q Consensus 196 ~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~c~ 274 (411)
..+..+++|++| ++.++. ++.++...+..+++|++|+++++. +...++ ....+++|+.|++++|
T Consensus 127 ------~~~~~l~~L~~L------~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N- 191 (270)
T 2o6q_A 127 ------RVFDSLTKLTYL------SLGYNE-LQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN- 191 (270)
T ss_dssp ------TTTTTCTTCCEE------ECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-
T ss_pred ------HHhCcCcCCCEE------ECCCCc-CCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-
Confidence 012245667777 776654 455554444566777777777643 333332 2333677777777766
Q ss_pred CCccccchHhhhccccccEEeEcccc
Q 038576 275 GMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 275 ~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
.++.+++ ..+..+++|+.|++.+++
T Consensus 192 ~l~~~~~-~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 192 QLKRVPE-GAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred cCCcCCH-HHhccccCCCEEEecCCC
Confidence 3444433 234567777777777654
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=6e-18 Score=155.77 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=77.9
Q ss_pred hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc--cchHHhc-------CCCCCCEEecCCCCCcc-ccCcc
Q 038576 10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME--ELAGEIG-------QLTQLRLLNLSKCFELK-VIPPN 78 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~--~lp~~i~-------~l~~L~~L~L~~c~~~~-~~~~~ 78 (411)
++...+|++|++++|.+ . |..+... |++|+++++.+. .+|..+. ++++|++|++++| .+. .+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHH
Confidence 34556677777777777 4 5555443 777777777664 4555444 6777777777774 444 45554
Q ss_pred cc-cCCCCccEEEecccccccCccccccccccccchhhccCC-----CCCCEEEEeeccCCcCC-cccccCCCCcEEEEE
Q 038576 79 VI-SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL-----SKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL 151 (411)
Q Consensus 79 ~l-~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~ 151 (411)
++ +.+++|++|++++|.+.. . +..+..+ ++|++|++++|.+..++ ..++.+++|++|+++
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~------------~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 181 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWAT------------R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSS------------S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC
T ss_pred HHHhcCCCccEEEccCCCCcc------------h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC
Confidence 21 677777777777776654 1 2333333 67777777777766555 456666677766665
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=2.3e-16 Score=153.94 Aligned_cols=57 Identities=28% Similarity=0.403 Sum_probs=29.1
Q ss_pred cCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccccc
Q 038576 37 KLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI 96 (411)
Q Consensus 37 ~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~ 96 (411)
+|++|++++|.++.++ ..++++++|++|++++ +.+...++ ++.+++|++|++++|.+
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l 92 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYV 92 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT-SCCEEEEE--CTTCTTCCEEECCSSEE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC-CCCCCCcc--cccCCCCCEEEecCCcC
Confidence 5555555555555432 3455555555555555 33443332 45555555555555544
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.70 E-value=2.7e-17 Score=151.34 Aligned_cols=227 Identities=16% Similarity=0.131 Sum_probs=140.4
Q ss_pred CChhhhccccCcEEEecCCcCCC---Ccccc-------ccccCcEEEeeCCccc-cchHHh--cCCCCCCEEecCCCCCc
Q 038576 6 LPSSLGLLQNLQTLSLDDCELGD---MAIIG-------DLKKLVILALRGSDME-ELAGEI--GQLTQLRLLNLSKCFEL 72 (411)
Q Consensus 6 lp~~l~~l~~L~~L~l~~~~l~~---~~~l~-------~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~c~~~ 72 (411)
+|..+... |++|++++|.++. +..+. ++++|++|++++|.++ .+|..+ +.+++|++|++++ +.+
T Consensus 57 ~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l 133 (312)
T 1wwl_A 57 DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSW 133 (312)
T ss_dssp CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBC
T ss_pred cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCC
Confidence 46665554 7777777777643 33333 5777777777777776 566654 6777777777777 456
Q ss_pred cccCcccccCC-----CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc---CCccc--ccC
Q 038576 73 KVIPPNVISSL-----SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT---LPRDL--SFF 142 (411)
Q Consensus 73 ~~~~~~~l~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~~l--~~~ 142 (411)
..+|.. ++.+ ++|++|++++|.+.. ..+..+.++++|++|++++|.... ++..+ ..+
T Consensus 134 ~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 134 ATRDAW-LAELQQWLKPGLKVLSIAQAHSLN------------FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp SSSSSH-HHHHHTTCCTTCCEEEEESCSCCC------------CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred cchhHH-HHHHHHhhcCCCcEEEeeCCCCcc------------chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 665543 5555 777777777777654 333667777777777777776332 23333 567
Q ss_pred CCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhcccc
Q 038576 143 KMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGIN 222 (411)
Q Consensus 143 ~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~ 222 (411)
++|++|++..+.....+.. . ......+++|++| +++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~------------------------------~--------~~~~~~l~~L~~L------~Ls 236 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGV------------------------------C--------SALAAARVQLQGL------DLS 236 (312)
T ss_dssp TTCCEEECTTSCCCCHHHH------------------------------H--------HHHHHTTCCCSEE------ECT
T ss_pred CCCCEEECCCCcCcchHHH------------------------------H--------HHHHhcCCCCCEE------ECC
Confidence 7777777754332210000 0 0001234677777 777
Q ss_pred ccccccccc-cccccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 223 HRRELKQIF-KQESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 223 ~~~~l~~~~-~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
++. +.... ......+++|++|+++++. ++..+... +++|+.|++++|. ++.++. ...+++|++|++++++
T Consensus 237 ~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~p~---~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 237 HNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--PAKLSVLDLSYNR-LDRNPS---PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--CSEEEEEECCSSC-CCSCCC---TTTSCEEEEEECTTCT
T ss_pred CCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--cCCceEEECCCCC-CCCChh---HhhCCCCCEEeccCCC
Confidence 765 33322 2233456888999998853 44443332 3789999998874 555532 5778999999998865
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=4.8e-18 Score=158.03 Aligned_cols=38 Identities=18% Similarity=0.166 Sum_probs=17.2
Q ss_pred CCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 262 FQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 262 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
+++|+.|++++|..+++... ..+..+++|++|++++|.
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCT
T ss_pred CCCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCC
Confidence 45555555555543333211 123444555555555553
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=1.5e-17 Score=154.78 Aligned_cols=79 Identities=20% Similarity=0.175 Sum_probs=39.3
Q ss_pred ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccc--cchHHhcCCCCCCEEecCCCCCcc-ccCcccccCCCCccEE
Q 038576 14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELK-VIPPNVISSLSRLEEL 89 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~-~~~~~~l~~L~~L~~L 89 (411)
.++++|+++++.+.. +..+..+++|++|++++|.++ .+|..+.++++|++|++++|. +. ..+.. ++++++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~-l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNT-LAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHH-HTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHH-HhcCCCCCEE
Confidence 455555555555444 333444555555555555544 144445555555555555532 32 22222 4455555555
Q ss_pred Eeccc
Q 038576 90 YIGQS 94 (411)
Q Consensus 90 ~l~~~ 94 (411)
++++|
T Consensus 148 ~L~~~ 152 (336)
T 2ast_B 148 NLSGC 152 (336)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 55555
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=1.3e-18 Score=174.54 Aligned_cols=132 Identities=12% Similarity=0.081 Sum_probs=76.1
Q ss_pred CCCCCcEEEec-----CCcCCccCCC------CCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEccccccccc
Q 038576 237 NAKDLEKLSIF-----MCDNLTHLVP------SSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEI 305 (411)
Q Consensus 237 ~~~~L~~L~l~-----~c~~l~~~~~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 305 (411)
.+++|++|+++ +|+.++..+. ....+++|+.|++++ .+++.........+++|+.|++++|. +...
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~ 471 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDL 471 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHH
Confidence 57888888888 4555553221 122377888888865 45544333333447888888888876 3222
Q ss_pred ccccCCCCCCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEE
Q 038576 306 VADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQM 384 (411)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l 384 (411)
.... -...+++|++|++++|+. ++. .....+..+++|++|++++|+.-..-...+ ..+|+|+...+
T Consensus 472 ~~~~----------l~~~~~~L~~L~L~~n~~-~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~ 538 (594)
T 2p1m_B 472 GMHH----------VLSGCDSLRKLEIRDCPF-GDK--ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI 538 (594)
T ss_dssp HHHH----------HHHHCTTCCEEEEESCSC-CHH--HHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEE
T ss_pred HHHH----------HHhcCCCcCEEECcCCCC-cHH--HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 1110 012478999999999874 332 111111346899999999987522111111 24577765555
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=1.5e-18 Score=168.72 Aligned_cols=344 Identities=16% Similarity=0.144 Sum_probs=181.2
Q ss_pred ccCcEEEecCCcCCC--C-ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCcccc-CcccccCCC
Q 038576 14 QNLQTLSLDDCELGD--M-AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVI-PPNVISSLS 84 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~--~-~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~-~~~~l~~L~ 84 (411)
++|++|+++++.+++ . ..+..+++|++|++++|.++ .++..+..+++|++|++++| .+.+. +..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHh
Confidence 467888888888776 2 33677888888888888776 45667778888888888884 45443 222233454
Q ss_pred ----CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-Cccc-----ccCCCCcEEEEEecC
Q 038576 85 ----RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDL-----SFFKMLQRYRILIGD 154 (411)
Q Consensus 85 ----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l-----~~~~~L~~L~i~~~~ 154 (411)
+|++|++++|.+.... ....+..+.++++|++|++++|..... +..+ ...++|++|++..+.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~--------~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAG--------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp STTCCCCEEECTTSCCBGGG--------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred hCCCceeEEEccCCCCCHHH--------HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 6888888888765300 012356777888888888888764321 1111 224578888887554
Q ss_pred Ccccc-----C-cCCccceeEEEecCCccccccccccc-----ccccchhcccC---CCc------cccccccchhhhch
Q 038576 155 SREYD-----A-WDGISRISKLKLTNGANICLNEGHIM-----QLKRIEDLTSG---GDS------EALYTSFKNVENGM 214 (411)
Q Consensus 155 ~~~~~-----~-~~~~~~l~~L~~~~~~~~~~~~~~~~-----~~~~l~~~~~~---~~~------~~~~~~~~~L~~L~ 214 (411)
..... . +....+++.|++.++.........+. ....++.+... +.. ...+..+++|++|
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L- 232 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL- 232 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE-
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE-
Confidence 33211 1 11146777777766432110000010 01123332221 111 0123345777777
Q ss_pred Hhhhccccccccccccc-----cccccCCCCCcEEEecCCcCCcc-----CCCCCCCCCCcCeEeecCCCCCccccchHh
Q 038576 215 EAMMRGINHRRELKQIF-----KQESSNAKDLEKLSIFMCDNLTH-----LVPSSTSFQNLTTLTVWGCHGMINVLTSST 284 (411)
Q Consensus 215 ~~~~~~l~~~~~l~~~~-----~~~~~~~~~L~~L~l~~c~~l~~-----~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 284 (411)
++.++. +.+.. ......+++|++|++++|. +.. +......+++|+.|++++|. +++......
T Consensus 233 -----~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l 304 (461)
T 1z7x_W 233 -----ALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLL 304 (461)
T ss_dssp -----ECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHH
T ss_pred -----eccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHH
Confidence 777764 33221 1112346778888887763 322 12222236777777777763 333222111
Q ss_pred hh----ccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCceeccC--CCcccccCCCcceE
Q 038576 285 AR----SLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLTSFSCS--GNNCAFKFPSLERL 358 (411)
Q Consensus 285 ~~----~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~~~~~~~~~~L~~L 358 (411)
.. ..++|++|++++|. ++..... ..+.....+++|++|+++++ .+.+.... ........++|++|
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~-l~~~~~~-------~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCS-FTAACCS-------HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSC-CBGGGHH-------HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred HHHhccCCccceeeEcCCCC-CchHHHH-------HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEE
Confidence 11 22577777777765 3322100 00112233566777777765 34432000 00000013567777
Q ss_pred eecCCCCCc-----cccCCCCCCCCceEEEEe
Q 038576 359 VVNRCPNMK-----IFSEGELSTPKLQKVQMS 385 (411)
Q Consensus 359 ~i~~C~~l~-----~~p~~~~~~~~L~~l~l~ 385 (411)
++++| .+. .+|..+...++|++|+++
T Consensus 376 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~ 406 (461)
T 1z7x_W 376 WLADC-DVSDSSCSSLAATLLANHSLRELDLS 406 (461)
T ss_dssp ECTTS-CCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred ECCCC-CCChhhHHHHHHHHHhCCCccEEECC
Confidence 77665 344 445444456667776665
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=7.3e-16 Score=140.12 Aligned_cols=199 Identities=18% Similarity=0.130 Sum_probs=137.8
Q ss_pred hhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 10 LGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
++++.+++.++++++.++. |..+. +++++|++++|.++.+ |..+.++++|++|++++ +.++.++. .+.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccC--CCCCCcCC
Confidence 6778889999999999888 76664 6899999999998866 45688999999999999 67888876 47899999
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCccccCcCCccc
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSREYDAWDGISR 166 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~~~~~~~~~~ 166 (411)
+|++++|.+.. .+..+..+++|++|++++|.+..++. .+..+++|++|++..+.....+.
T Consensus 81 ~L~Ls~N~l~~-------------l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~------ 141 (290)
T 1p9a_G 81 TLDLSHNQLQS-------------LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP------ 141 (290)
T ss_dssp EEECCSSCCSS-------------CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT------
T ss_pred EEECCCCcCCc-------------CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh------
Confidence 99999998752 33567788899999999988777764 46777888888775333221111
Q ss_pred eeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEe
Q 038576 167 ISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSI 246 (411)
Q Consensus 167 l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l 246 (411)
..+..+++|+.| ++.++. ++.++...+..+++|+.|++
T Consensus 142 -----------------------------------~~~~~l~~L~~L------~L~~N~-l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 142 -----------------------------------GLLTPTPKLEKL------SLANNN-LTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp -----------------------------------TTTTTCTTCCEE------ECTTSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred -----------------------------------hhcccccCCCEE------ECCCCc-CCccCHHHhcCcCCCCEEEC
Confidence 011234566666 666654 45555444455667777777
Q ss_pred cCCcCCccCCCCCCCCCCcCeEeecCCCC
Q 038576 247 FMCDNLTHLVPSSTSFQNLTTLTVWGCHG 275 (411)
Q Consensus 247 ~~c~~l~~~~~~~~~~~~L~~L~l~~c~~ 275 (411)
+++ .+...+......++|+.+++.+++-
T Consensus 180 ~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 180 QEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 663 3334433333355666666665543
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=4e-16 Score=143.23 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=153.7
Q ss_pred EecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccC
Q 038576 20 SLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWG 99 (411)
Q Consensus 20 ~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 99 (411)
.+..+.+.+......+++|++|+++++.++.+| .+..+++|++|++++ +.+..++. +..+++|++|++++|.+..
T Consensus 25 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~-n~i~~~~~--~~~l~~L~~L~L~~n~l~~- 99 (308)
T 1h6u_A 25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKD-NQITDLAP--LKNLTKITELELSGNPLKN- 99 (308)
T ss_dssp HTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG--GTTCCSCCEEECCSCCCSC-
T ss_pred HhCCCCcCceecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccC-CcCCCChh--HccCCCCCEEEccCCcCCC-
Confidence 444555555455667889999999999998887 588999999999999 57888876 8899999999999998753
Q ss_pred ccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccc
Q 038576 100 KVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANIC 179 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~ 179 (411)
...+..+++|++|++++|....++. +..+++|++|++.
T Consensus 100 -------------~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~---------------------------- 137 (308)
T 1h6u_A 100 -------------VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLD---------------------------- 137 (308)
T ss_dssp -------------CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECC----------------------------
T ss_pred -------------chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECC----------------------------
Confidence 2467888889999998887766654 5566666666553
Q ss_pred cccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCCCC
Q 038576 180 LNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVPSS 259 (411)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 259 (411)
++. +..+.. ...+++|+.|+++++ .+....+ .
T Consensus 138 -------------------------------------------~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l 169 (308)
T 1h6u_A 138 -------------------------------------------LNQ-ITNISP--LAGLTNLQYLSIGNA-QVSDLTP-L 169 (308)
T ss_dssp -------------------------------------------SSC-CCCCGG--GGGCTTCCEEECCSS-CCCCCGG-G
T ss_pred -------------------------------------------CCc-cCcCcc--ccCCCCccEEEccCC-cCCCChh-h
Confidence 221 122211 346789999999986 4555544 3
Q ss_pred CCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCcCCc
Q 038576 260 TSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQSLT 339 (411)
Q Consensus 260 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 339 (411)
..+++|+.|++++|. ++++++ +..+++|++|++++|. +..+.. ...+++|+.|++++++ ++
T Consensus 170 ~~l~~L~~L~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~-l~~~~~-------------l~~l~~L~~L~l~~N~-i~ 230 (308)
T 1h6u_A 170 ANLSKLTTLKADDNK-ISDISP---LASLPNLIEVHLKNNQ-ISDVSP-------------LANTSNLFIVTLTNQT-IT 230 (308)
T ss_dssp TTCTTCCEEECCSSC-CCCCGG---GGGCTTCCEEECTTSC-CCBCGG-------------GTTCTTCCEEEEEEEE-EE
T ss_pred cCCCCCCEEECCCCc-cCcChh---hcCCCCCCEEEccCCc-cCcccc-------------ccCCCCCCEEEccCCe-ee
Confidence 449999999998885 555533 5889999999999986 655542 2348999999999975 44
Q ss_pred ee
Q 038576 340 SF 341 (411)
Q Consensus 340 ~~ 341 (411)
..
T Consensus 231 ~~ 232 (308)
T 1h6u_A 231 NQ 232 (308)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=4.1e-16 Score=140.87 Aligned_cols=132 Identities=27% Similarity=0.338 Sum_probs=108.7
Q ss_pred CCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcc
Q 038576 3 LLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 3 l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
++.+|. .+.++.+|++|++++|.++. +..+.++++|++|++++|.++.++ ..++++++|++|++++ +.+..++..
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~ 118 (276)
T 2z62_A 40 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENF 118 (276)
T ss_dssp CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-SCCCCSTTC
T ss_pred ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC-CCccccCch
Confidence 455554 78999999999999999988 457999999999999999999766 5689999999999999 577777765
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQ 146 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~ 146 (411)
.++.+++|++|++++|.+.... .+..+.++++|++|++++|....++. .+..+.+|+
T Consensus 119 ~~~~l~~L~~L~l~~n~l~~~~-----------l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 119 PIGHLKTLKELNVAHNLIQSFK-----------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (276)
T ss_dssp CCTTCTTCCEEECCSSCCCCCC-----------CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred hcccCCCCCEEECcCCccceec-----------CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc
Confidence 5899999999999999886411 34788999999999999998777653 444455555
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=1.7e-15 Score=136.41 Aligned_cols=158 Identities=22% Similarity=0.397 Sum_probs=128.1
Q ss_pred CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
++.++ .+..+.+|++|++++|.++.++.++++++|++|++++|.++.++.. ++++++|++|++++ +.++.++...++
T Consensus 53 i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~ 130 (272)
T 3rfs_A 53 IKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFD 130 (272)
T ss_dssp CCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTT
T ss_pred ccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhc
Confidence 34444 5889999999999999998877899999999999999999977654 78999999999999 578888877689
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecCCccccC
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGDSREYDA 160 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~~~~~~~ 160 (411)
.+++|++|++++|.+.. .....+.++++|++|++++|.+..++.. +..+++|++|++..+.....+.
T Consensus 131 ~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQS------------LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp TCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCCCCEEECCCCccCc------------cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 99999999999998864 3335578999999999999998877765 5789999999998776554443
Q ss_pred --cCCccceeEEEecC
Q 038576 161 --WDGISRISKLKLTN 174 (411)
Q Consensus 161 --~~~~~~l~~L~~~~ 174 (411)
+....+++.|++.+
T Consensus 199 ~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHD 214 (272)
T ss_dssp TTTTTCTTCCEEECCS
T ss_pred HHHhCCcCCCEEEccC
Confidence 22355555555543
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=4.3e-15 Score=135.04 Aligned_cols=201 Identities=15% Similarity=0.125 Sum_probs=143.7
Q ss_pred cccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccccc
Q 038576 31 IIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRN 110 (411)
Q Consensus 31 ~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 110 (411)
.+++++++++++++++.++.+|..+. +++++|++++ +.+..++...+..+++|++|++++|.+.. +
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~--------- 70 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTK--L--------- 70 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTT-SCCSEEEGGGGTTCTTCCEEECTTSCCCE--E---------
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCC-CcCCccCHHHhhcCCCCCEEECCCCccCc--c---------
Confidence 36778999999999999999987765 6899999999 67888866669999999999999998753 2
Q ss_pred cchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCccccccccccccccc
Q 038576 111 ASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKR 190 (411)
Q Consensus 111 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 190 (411)
.....+++|++|++++|.+..+|..+..+++|++|++..+.....+.
T Consensus 71 ---~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~------------------------------ 117 (290)
T 1p9a_G 71 ---QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL------------------------------ 117 (290)
T ss_dssp ---ECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCS------------------------------
T ss_pred ---cCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCH------------------------------
Confidence 22268899999999999999999888888999999887444331110
Q ss_pred chhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEecCCcCCccCCC-CCCCCCCcCeEe
Q 038576 191 IEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIFMCDNLTHLVP-SSTSFQNLTTLT 269 (411)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~ 269 (411)
..+..+++|++| .+.++. ++.++...+..+++|+.|+++++ .+...++ ....+++|+.|+
T Consensus 118 -----------~~~~~l~~L~~L------~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 118 -----------GALRGLGELQEL------YLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp -----------STTTTCTTCCEE------ECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEE
T ss_pred -----------HHHcCCCCCCEE------ECCCCC-CCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEE
Confidence 012345677777 777754 55555544556777888888774 3444443 223477788888
Q ss_pred ecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 270 VWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 270 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
+++|. ++.++. .+...++|+.|++.+++
T Consensus 179 L~~N~-l~~ip~--~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 179 LQENS-LYTIPK--GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCSSC-CCCCCT--TTTTTCCCSEEECCSCC
T ss_pred CCCCc-CCccCh--hhcccccCCeEEeCCCC
Confidence 87664 445433 23445677777777654
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=4.3e-17 Score=154.67 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=95.6
Q ss_pred CCCChhhhccccCcEEEecCCcCCC--C----ccccccccCcEEEeeCCccc----cchHHh-------cCCCCCCEEec
Q 038576 4 LALPSSLGLLQNLQTLSLDDCELGD--M----AIIGDLKKLVILALRGSDME----ELAGEI-------GQLTQLRLLNL 66 (411)
Q Consensus 4 ~~lp~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~~L~~L~L~~~~l~----~lp~~i-------~~l~~L~~L~L 66 (411)
..++..+..+.+|++|++++|.++. + ..+..+++|++|++++|.+. .+|..+ .++++|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 4567778888899999999988776 3 33667889999999887443 344444 68889999999
Q ss_pred CCCCCccc-----cCcccccCCCCccEEEecccccccCccccccccccccchhhccCC---------CCCCEEEEeeccC
Q 038576 67 SKCFELKV-----IPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL---------SKLTSLEILIQDE 132 (411)
Q Consensus 67 ~~c~~~~~-----~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~~~~ 132 (411)
++| .+.. ++.. +..+++|++|++++|.+.. ..+ ......+..+ ++|++|++++|.+
T Consensus 102 s~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~-~~~-------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 102 SDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGP-QAG-------AKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp CSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHH-HHH-------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred CCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCH-HHH-------HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 984 5554 4544 7788999999999887743 000 0112233334 7888888888875
Q ss_pred C--cCC---cccccCCCCcEEEEEec
Q 038576 133 K--TLP---RDLSFFKMLQRYRILIG 153 (411)
Q Consensus 133 ~--~~~---~~l~~~~~L~~L~i~~~ 153 (411)
. .++ ..+..+++|++|++..+
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4 333 34556777888777533
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=3.3e-15 Score=132.94 Aligned_cols=159 Identities=22% Similarity=0.375 Sum_probs=128.8
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .++++|++++|.++. +..+.++++|++|++++|.++.++. .+.++++|++|++++ +.++.++..
T Consensus 25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 101 (251)
T 3m19_A 25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLG 101 (251)
T ss_dssp CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTT
T ss_pred CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC-CcccccChh
Confidence 4677887765 589999999999888 5678999999999999999986654 478999999999999 678888877
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEecCCcc
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIGDSRE 157 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~~~~~ 157 (411)
.++.+++|++|++++|.+.. .....+..+++|++|++++|.+..++. .+..+++|++|++..+....
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKS------------LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred HhcccCCCCEEEcCCCcCCC------------cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 68899999999999998764 223557889999999999999888877 57788999999998887665
Q ss_pred ccC--cCCccceeEEEecCC
Q 038576 158 YDA--WDGISRISKLKLTNG 175 (411)
Q Consensus 158 ~~~--~~~~~~l~~L~~~~~ 175 (411)
.+. +....+++.|++.++
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSC
T ss_pred cCHHHHhCCCCCCEEEeeCC
Confidence 553 334677777777553
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=3.8e-15 Score=135.48 Aligned_cols=123 Identities=19% Similarity=0.270 Sum_probs=90.0
Q ss_pred hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
+.++.+|++|++++|.++..+.++.+++|++|++++|.++.++. ++++++|++|++++ +.++.++. ++.+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE-NKVKDLSS--LKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCGGG--GTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC-CcCCCChh--hccCCCCCEE
Confidence 45677888888888887775557778888888888888887766 77888888888888 56777664 7788888888
Q ss_pred EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576 90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 151 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 151 (411)
++++|.+.. ...+..+++|++|++++|....+ ..+..+++|+.|+++
T Consensus 118 ~L~~n~i~~--------------~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 164 (291)
T 1h6t_A 118 SLEHNGISD--------------INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLE 164 (291)
T ss_dssp ECTTSCCCC--------------CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECC
T ss_pred ECCCCcCCC--------------ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEcc
Confidence 888887642 24566777788888877776655 445566666666554
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=3.3e-15 Score=130.07 Aligned_cols=138 Identities=19% Similarity=0.305 Sum_probs=117.2
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|+.|++++|.++. +..|..+++|++|++++|.++.+ |..+.++++|++|++++ +.++.+|..
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~ 98 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKS 98 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHh
Confidence 3677887665 689999999999988 45789999999999999999966 67799999999999999 688899888
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGD 154 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~ 154 (411)
++..+++|++|++++|.+.. ..+..+..+++|++|++++|.+..++.. +..+++|+.|++..+.
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINC------------LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCCCCCEEECCCCCCCE------------eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 78899999999999998875 3447788999999999999998887764 7778899999887444
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=139.56 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=114.0
Q ss_pred cCcEEEecCCcCCC--C---ccccccccCcEEEeeCCccc-cchHHh--cCCCCCCEEecCCCCCccc-cC---cccccC
Q 038576 15 NLQTLSLDDCELGD--M---AIIGDLKKLVILALRGSDME-ELAGEI--GQLTQLRLLNLSKCFELKV-IP---PNVISS 82 (411)
Q Consensus 15 ~L~~L~l~~~~l~~--~---~~l~~l~~L~~L~L~~~~l~-~lp~~i--~~l~~L~~L~L~~c~~~~~-~~---~~~l~~ 82 (411)
.++.+.+.++.+.. . ..+..+++|++|++++|.+. ..|..+ +++++|++|++++| .+.. .+ ...+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhh
Confidence 35556666555443 1 11223345666666666665 344444 56666666666663 3332 11 111335
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc---C--CcccccCCCCcEEEEEecCCcc
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT---L--PRDLSFFKMLQRYRILIGDSRE 157 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~--~~~l~~~~~L~~L~i~~~~~~~ 157 (411)
+++|++|++++|.+.. ..+..+..+++|++|++++|.... + +..+..+++|++|+++.+....
T Consensus 144 ~~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPA------------FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp CSCCCEEEEECCSSCC------------CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred ccCCCEEEeeCCCcch------------hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence 6666666666666543 223555666666666666665322 1 1222456666666665433221
Q ss_pred ccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccC
Q 038576 158 YDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSN 237 (411)
Q Consensus 158 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~ 237 (411)
.+.. . ......+++|++| +++++. +....+.....
T Consensus 212 l~~~------------------------------~--------~~l~~~l~~L~~L------~Ls~N~-l~~~~p~~~~~ 246 (310)
T 4glp_A 212 PTGV------------------------------C--------AALAAAGVQPHSL------DLSHNS-LRATVNPSAPR 246 (310)
T ss_dssp HHHH------------------------------H--------HHHHHHTCCCSSE------ECTTSC-CCCCCCSCCSS
T ss_pred hHHH------------------------------H--------HHHHhcCCCCCEE------ECCCCC-CCccchhhHHh
Confidence 1100 0 0001234566666 666655 33332212222
Q ss_pred ---CCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccc
Q 038576 238 ---AKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 238 ---~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 300 (411)
+++|++|+++++ .++..+... +++|+.|++++|. ++.++. ...+++|+.|++++++
T Consensus 247 ~~~~~~L~~L~Ls~N-~l~~lp~~~--~~~L~~L~Ls~N~-l~~~~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 CMWSSALNSLNLSFA-GLEQVPKGL--PAKLRVLDLSSNR-LNRAPQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCTTCCCEECCSS-CCCSCCSCC--CSCCSCEECCSCC-CCSCCC---TTSCCCCSCEECSSTT
T ss_pred ccCcCcCCEEECCCC-CCCchhhhh--cCCCCEEECCCCc-CCCCch---hhhCCCccEEECcCCC
Confidence 367888888774 344433322 4788888887764 444322 3667888888888765
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=5.4e-15 Score=126.47 Aligned_cols=149 Identities=18% Similarity=0.262 Sum_probs=123.9
Q ss_pred hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc-cCcccccCCCCccE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV-IPPNVISSLSRLEE 88 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~l~~L~~L~~ 88 (411)
..++.+|++|++++|.+++.+.+..+++|++|++++|.++.++ .+..+++|++|++++ +.+.. .+.. ++.+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~-l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPN-LSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCC-CTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChh-hcCCCCCCE
Confidence 4678899999999999998337899999999999999887765 688999999999999 46665 4554 899999999
Q ss_pred EEecccccccCccccccccccccchhhccCCCCCCEEEEeecc-CCcCCcccccCCCCcEEEEEecCCccccCcCCccce
Q 038576 89 LYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRILIGDSREYDAWDGISRI 167 (411)
Q Consensus 89 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l 167 (411)
|++++|.+.. ..+..+..+++|++|++++|. ...++ .+..+++|++|++..+....++.+....++
T Consensus 117 L~Ls~n~i~~------------~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L 183 (197)
T 4ezg_A 117 LDISHSAHDD------------SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKL 183 (197)
T ss_dssp EECCSSBCBG------------GGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSC
T ss_pred EEecCCccCc------------HhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCC
Confidence 9999998865 456888999999999999998 77776 688899999999988777666655557777
Q ss_pred eEEEecC
Q 038576 168 SKLKLTN 174 (411)
Q Consensus 168 ~~L~~~~ 174 (411)
+.|++.+
T Consensus 184 ~~L~l~~ 190 (197)
T 4ezg_A 184 NQLYAFS 190 (197)
T ss_dssp CEEEECB
T ss_pred CEEEeeC
Confidence 7777754
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.58 E-value=3.5e-14 Score=126.27 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=93.5
Q ss_pred ccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEe
Q 038576 14 QNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYI 91 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l 91 (411)
.+.++++++++.++. |..+. .++++|++++|.++.++. .++++++|++|++++ +.+..++...+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-CcCCccCHhHhccCCcCCEEEC
Confidence 467889999988888 76665 589999999998886654 588899999999999 5777777666888999999999
Q ss_pred cccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEE
Q 038576 92 GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRIL 151 (411)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~ 151 (411)
++|.+.. ..+..+..+++|++|++++|.+..++.. +..+++|+.|++.
T Consensus 91 ~~n~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 139 (251)
T 3m19_A 91 ANNQLAS------------LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139 (251)
T ss_dssp TTSCCCC------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcccc------------cChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence 9988764 2335667788888888888877766654 3445555555543
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1.6e-14 Score=131.37 Aligned_cols=153 Identities=24% Similarity=0.350 Sum_probs=130.9
Q ss_pred CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS 82 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~ 82 (411)
++.+| .+..+.+|++|++++|.++....+.++++|++|++++|.++.+|. ++++++|++|++++ +.+..++. +..
T Consensus 58 i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~-n~i~~~~~--l~~ 132 (291)
T 1h6t_A 58 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH-NGISDING--LVH 132 (291)
T ss_dssp CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT-SCCCCCGG--GGG
T ss_pred cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC-CcCCCChh--hcC
Confidence 45565 488999999999999999993339999999999999999998765 89999999999999 57888753 889
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD 162 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~ 162 (411)
+++|++|++++|.+.. ...+..+++|++|++++|....++. +..+++|++|+++.+....++.+.
T Consensus 133 l~~L~~L~l~~n~l~~--------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~ 197 (291)
T 1h6t_A 133 LPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA 197 (291)
T ss_dssp CTTCCEEECCSSCCCC--------------CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT
T ss_pred CCCCCEEEccCCcCCc--------------chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhc
Confidence 9999999999998753 2678899999999999999888776 889999999999988877777766
Q ss_pred CccceeEEEecCC
Q 038576 163 GISRISKLKLTNG 175 (411)
Q Consensus 163 ~~~~l~~L~~~~~ 175 (411)
...+++.|++.++
T Consensus 198 ~l~~L~~L~l~~n 210 (291)
T 1h6t_A 198 GLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCSEEEEEEE
T ss_pred cCCCCCEEECcCC
Confidence 6888888887653
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.57 E-value=1.4e-14 Score=123.76 Aligned_cols=135 Identities=20% Similarity=0.300 Sum_probs=115.5
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCcccc-chHHhcCCCCCCEEecCCCCCccc-cCccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEE-LAGEIGQLTQLRLLNLSKCFELKV-IPPNV 79 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~ 79 (411)
.++.+| .+..+.+|++|++++|.++.++.+..+++|++|++++|.++. .|..++.+++|++|++++| .+.. .+..
T Consensus 55 ~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~- 131 (197)
T 4ezg_A 55 NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTK- 131 (197)
T ss_dssp CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHH-
T ss_pred CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHH-
Confidence 356778 789999999999999988887789999999999999999984 6778999999999999994 6665 4444
Q ss_pred ccCCCCccEEEecccc-cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576 80 ISSLSRLEELYIGQSP-IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 154 (411)
++.+++|++|++++|. +.. ...+..+++|++|++++|....++ .+..+++|++|++..+.
T Consensus 132 l~~l~~L~~L~L~~n~~i~~--------------~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 132 INTLPKVNSIDLSYNGAITD--------------IMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp HTTCSSCCEEECCSCTBCCC--------------CGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred HhhCCCCCEEEccCCCCccc--------------cHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 8999999999999997 532 246889999999999999988876 77899999999998655
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.7e-14 Score=124.48 Aligned_cols=134 Identities=24% Similarity=0.383 Sum_probs=97.7
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNV 79 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~ 79 (411)
++.+|..+ ..+|++|++++|.++. +..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.++.++...
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~ 95 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGV 95 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC-CcCCccCHhH
Confidence 45566544 3478888888888777 34567888888888888888877654 57788888888888 5677777665
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEE
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRIL 151 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~ 151 (411)
++.+++|++|++++|.+.. .....+.++++|++|++++|.+..++.. +..+++|++|++.
T Consensus 96 ~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQS------------LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp TTTCTTCCEEECCSSCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred hcCccCCCEEEcCCCcCcc------------cCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEec
Confidence 6788888888888887754 2224567788888888888877666654 5667777777765
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=1.3e-14 Score=144.64 Aligned_cols=127 Identities=18% Similarity=0.249 Sum_probs=102.6
Q ss_pred hhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 10 LGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
+.++.+|+.|++++|.+..++.++.+++|++|+|++|.+..++. +..+++|++|+|++ +.+..++. +..+++|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~--l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE-NKIKDLSS--LKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCTT--STTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC-CCCCCChh--hccCCCCCEE
Confidence 56788899999999888885578888999999999998888776 88899999999998 57777764 8889999999
Q ss_pred EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCC
Q 038576 90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDS 155 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~ 155 (411)
++++|.+.. +..+..+++|+.|++++|.+..+ ..+..+++|+.|+++.+..
T Consensus 115 ~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 115 SLEHNGISD--------------INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp ECTTSCCCC--------------CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC
T ss_pred EecCCCCCC--------------CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC
Confidence 999888743 24578888899999988887776 5677788888888764443
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.8e-14 Score=128.98 Aligned_cols=151 Identities=21% Similarity=0.279 Sum_probs=127.3
Q ss_pred CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS 82 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~ 82 (411)
+++++ .+.++.+|++|++++|.++..+.++.+++|++|++++|.++.++. ++++++|++|++++ +.++.+|. +..
T Consensus 31 i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N~l~~l~~--~~~ 105 (263)
T 1xeu_A 31 VTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-NRLKNLNG--IPS 105 (263)
T ss_dssp TTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCSCCTT--CCC
T ss_pred ccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-CccCCcCc--ccc
Confidence 45566 678999999999999999985588999999999999999998887 99999999999999 68888886 445
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD 162 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~ 162 (411)
++|++|++++|.+.. ...+.++++|++|++++|.+..++ .+..+++|+.|+++.+.....+.+.
T Consensus 106 -~~L~~L~L~~N~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~ 169 (263)
T 1xeu_A 106 -ACLSRLFLDNNELRD--------------TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNTGGLT 169 (263)
T ss_dssp -SSCCEEECCSSCCSB--------------SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBCTTST
T ss_pred -CcccEEEccCCccCC--------------ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcchHHhc
Confidence 999999999998753 246889999999999999988875 6788999999999887776665555
Q ss_pred CccceeEEEecC
Q 038576 163 GISRISKLKLTN 174 (411)
Q Consensus 163 ~~~~l~~L~~~~ 174 (411)
...+++.|++.+
T Consensus 170 ~l~~L~~L~l~~ 181 (263)
T 1xeu_A 170 RLKKVNWIDLTG 181 (263)
T ss_dssp TCCCCCEEEEEE
T ss_pred cCCCCCEEeCCC
Confidence 577788887755
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.56 E-value=1.8e-14 Score=125.43 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=108.7
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-C--ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-M--AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~--~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
.++.+|..+. ..+++|++++|.++. + ..|..+++|++|++++|.++.++. .++++++|++|++++ +.++.++.
T Consensus 22 ~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 98 (220)
T 2v70_A 22 KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-NRLENVQH 98 (220)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCCCCG
T ss_pred CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-CccCccCH
Confidence 3567776654 356889999988877 3 347888899999999998887765 688899999999998 67888877
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecC
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~ 154 (411)
..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+..+ |..+..+++|+.|++..+.
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITC------------VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCC------------BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCCcCCCEEECCCCcCCe------------ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 778889999999999988765 3346778888899999998887776 5667788888888876443
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=2e-14 Score=125.93 Aligned_cols=135 Identities=24% Similarity=0.338 Sum_probs=96.4
Q ss_pred CCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCccc
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNV 79 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~ 79 (411)
++.+|..+. .+|++|++++|.++. +..+.++++|++|++++|.++.+|.. ++.+++|++|++++ +.++.++...
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAV 107 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-CcCCccChhH
Confidence 566676554 678888888887776 56677778888888888877777644 57778888888887 5677777665
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc-ccccCCCCcEEEEEec
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRILIG 153 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~i~~~ 153 (411)
+..+++|++|++++|.+.. .+..+..+++|++|++++|.+..++. .+..+++|+.|++..+
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~-------------lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTE-------------LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTCTTCCEEECCSSCCCS-------------CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hCcchhhCeEeccCCcccc-------------cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 6778888888888777652 33566777788888888777766664 3566777777776533
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=133.28 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=154.5
Q ss_pred ccCcEEEeeCCccc--cchH--HhcCCCCCCEEecCCCCCccccCcccc--cCCCCccEEEecccccccCcccccccccc
Q 038576 36 KKLVILALRGSDME--ELAG--EIGQLTQLRLLNLSKCFELKVIPPNVI--SSLSRLEELYIGQSPIQWGKVEGVDGERR 109 (411)
Q Consensus 36 ~~L~~L~L~~~~l~--~lp~--~i~~l~~L~~L~L~~c~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 109 (411)
..++.+.++++.+. .+.. ....+++|++|++++|......|.. + ..+++|++|++++|.+.. ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~-~~~~------ 135 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVSWAT-GRSW------ 135 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCCCSS-TTSS------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeecccccc-hhhh------
Confidence 46788999988775 2222 1224577999999996444455655 5 899999999999998764 1110
Q ss_pred ccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCccccccccccccc
Q 038576 110 NASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQL 188 (411)
Q Consensus 110 ~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~ 188 (411)
.....+..+++|++|++++|....++ ..++.+++|++|+++.+.......
T Consensus 136 -~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------------------- 186 (310)
T 4glp_A 136 -LAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG---------------------------- 186 (310)
T ss_dssp -HHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH----------------------------
T ss_pred -hHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh----------------------------
Confidence 01134567999999999999977766 567889999999998776431000
Q ss_pred ccchhcccCCCccccccccchhhhchHhhhccccccccccccccc---cccCCCCCcEEEecCCcCCccC-CCCCCCC--
Q 038576 189 KRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQ---ESSNAKDLEKLSIFMCDNLTHL-VPSSTSF-- 262 (411)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~---~~~~~~~L~~L~l~~c~~l~~~-~~~~~~~-- 262 (411)
+.... ....+++|++| .++++. ++.+... ....+++|++|+++++. +.+. +.....+
T Consensus 187 -----~~~~~----~~~~l~~L~~L------~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 187 -----LMAAL----CPHKFPAIQNL------ALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMW 249 (310)
T ss_dssp -----HHTTS----CTTSSCCCCSC------BCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCC
T ss_pred -----hhHHH----hhhcCCCCCEE------ECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccC
Confidence 00000 01256789999 998875 4433321 12467999999999854 4443 3222224
Q ss_pred -CCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCCeeecCCCc
Q 038576 263 -QNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELKELNLSNLQ 336 (411)
Q Consensus 263 -~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 336 (411)
++|++|++++|. ++.++.. -+++|+.|+++++. ++.++. ...+++|+.|++++.+
T Consensus 250 ~~~L~~L~Ls~N~-l~~lp~~----~~~~L~~L~Ls~N~-l~~~~~-------------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAG-LEQVPKG----LPAKLRVLDLSSNR-LNRAPQ-------------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSC-CCSCCSC----CCSCCSCEECCSCC-CCSCCC-------------TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCC-CCchhhh----hcCCCCEEECCCCc-CCCCch-------------hhhCCCccEEECcCCC
Confidence 799999998875 5566432 24899999999986 665533 1248999999999864
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=7.5e-16 Score=146.09 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=149.0
Q ss_pred ChhhhccccCcEEEecCCcCCC-----Ccc-------ccccccCcEEEeeCCcccc-----chHHhcCCCCCCEEecCCC
Q 038576 7 PSSLGLLQNLQTLSLDDCELGD-----MAI-------IGDLKKLVILALRGSDMEE-----LAGEIGQLTQLRLLNLSKC 69 (411)
Q Consensus 7 p~~l~~l~~L~~L~l~~~~l~~-----~~~-------l~~l~~L~~L~L~~~~l~~-----lp~~i~~l~~L~~L~L~~c 69 (411)
+..+.++++|++|++++|.+.. |.. +..+++|++|++++|.+.. +|..+.++++|++|++++|
T Consensus 53 ~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 53 SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 3457789999999999986442 333 3688999999999999885 7888999999999999995
Q ss_pred CCccccCccc----ccCC---------CCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC---
Q 038576 70 FELKVIPPNV----ISSL---------SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK--- 133 (411)
Q Consensus 70 ~~~~~~~~~~----l~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--- 133 (411)
.+...+... +..+ ++|++|++++|.+....++ .....+..+++|++|++++|.+.
T Consensus 133 -~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~~l~~~~~L~~L~L~~n~l~~~g 203 (386)
T 2ca6_A 133 -GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK--------EWAKTFQSHRLLHTVKMVQNGIRPEG 203 (386)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH--------HHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred -CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH--------HHHHHHHhCCCcCEEECcCCCCCHhH
Confidence 555332211 3344 8999999999988631222 22356778999999999999866
Q ss_pred ---cCCcccccCCCCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchh
Q 038576 134 ---TLPRDLSFFKMLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNV 210 (411)
Q Consensus 134 ---~~~~~l~~~~~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L 210 (411)
-.+..+..+++|++|+++.+.... .+...+. ..+..+++|
T Consensus 204 ~~~l~~~~l~~~~~L~~L~Ls~n~l~~-------------------------------~g~~~l~------~~l~~~~~L 246 (386)
T 2ca6_A 204 IEHLLLEGLAYCQELKVLDLQDNTFTH-------------------------------LGSSALA------IALKSWPNL 246 (386)
T ss_dssp HHHHHHTTGGGCTTCCEEECCSSCCHH-------------------------------HHHHHHH------HHGGGCTTC
T ss_pred HHHHHHHHhhcCCCccEEECcCCCCCc-------------------------------HHHHHHH------HHHccCCCc
Confidence 233367788899998886443210 0000000 012245667
Q ss_pred hhchHhhhccccccccccccc----cccc--cCCCCCcEEEecCCcCCc----cCCCCC-CCCCCcCeEeecCCCCCccc
Q 038576 211 ENGMEAMMRGINHRRELKQIF----KQES--SNAKDLEKLSIFMCDNLT----HLVPSS-TSFQNLTTLTVWGCHGMINV 279 (411)
Q Consensus 211 ~~L~~~~~~~l~~~~~l~~~~----~~~~--~~~~~L~~L~l~~c~~l~----~~~~~~-~~~~~L~~L~l~~c~~l~~~ 279 (411)
++| .++++. +.... .... ..+++|++|++++|.... ..+... ..+++|+.|++++|..-...
T Consensus 247 ~~L------~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 247 REL------GLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CEE------ECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CEE------ECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 777 777665 33221 1111 236777777777754322 122221 22677777777776543322
Q ss_pred c-chHhhhccccccEEeEcc
Q 038576 280 L-TSSTARSLVRLRQMTIKV 298 (411)
Q Consensus 280 ~-~~~~~~~l~~L~~L~l~~ 298 (411)
+ .......+++++.+++..
T Consensus 320 ~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 320 DVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHHHHHHHTCCEECC
T ss_pred hHHHHHHHHhhhcCcchhhh
Confidence 1 123344456666555544
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=7.8e-14 Score=139.03 Aligned_cols=154 Identities=23% Similarity=0.346 Sum_probs=132.7
Q ss_pred CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS 82 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~ 82 (411)
+..+| .+..+.+|+.|+|++|.+.....+..+++|++|+|++|.+..+| .++.+++|++|++++ +.+..++. +..
T Consensus 55 i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~--l~~ 129 (605)
T 1m9s_A 55 IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH-NGISDING--LVH 129 (605)
T ss_dssp CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT-SCCCCCGG--GGG
T ss_pred CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC-CCCCCCcc--ccC
Confidence 45566 58999999999999999998334999999999999999999877 689999999999999 57887764 899
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccCcC
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDAWD 162 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~~~ 162 (411)
+++|+.|++++|.+.. ...+..+++|+.|++++|.+..+++ +..+++|+.|+++.+....++.+.
T Consensus 130 l~~L~~L~Ls~N~l~~--------------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~ 194 (605)
T 1m9s_A 130 LPQLESLYLGNNKITD--------------ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALA 194 (605)
T ss_dssp CTTCSEEECCSSCCCC--------------CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT
T ss_pred CCccCEEECCCCccCC--------------chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChHHc
Confidence 9999999999998753 2678899999999999999887766 889999999999988877777777
Q ss_pred CccceeEEEecCCc
Q 038576 163 GISRISKLKLTNGA 176 (411)
Q Consensus 163 ~~~~l~~L~~~~~~ 176 (411)
.+.+|+.|++..+.
T Consensus 195 ~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 195 GLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCSEEECCSEE
T ss_pred cCCCCCEEEccCCc
Confidence 78889999887643
No 106
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=4.2e-14 Score=117.61 Aligned_cols=136 Identities=18% Similarity=0.263 Sum_probs=113.2
Q ss_pred ccccCcEEEecCCcCC--C-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc-cCcccccCCCCcc
Q 038576 12 LLQNLQTLSLDDCELG--D-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV-IPPNVISSLSRLE 87 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~--~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~l~~L~~L~ 87 (411)
...+|++|++++|.++ . +..+..+++|++|++++|.++.+ ..++.+++|++|++++ +.+.. +|. .+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGLDM-LAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCCCH-HHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHHHH-HHhhCCCCC
Confidence 3478999999999988 4 77789999999999999999987 6789999999999999 46666 554 377799999
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEEEecCCccccCc
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRILIGDSREYDAW 161 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i~~~~~~~~~~~ 161 (411)
+|++++|.+.. + ..+..+..+++|++|++++|....++. .+..+++|++|++..+.....++.
T Consensus 99 ~L~Ls~N~l~~--~---------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 99 HLNLSGNKLKD--I---------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EEECBSSSCCS--S---------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EEeccCCccCc--c---------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99999998864 1 123678899999999999999888887 678899999999987776655543
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.49 E-value=3.1e-15 Score=140.52 Aligned_cols=60 Identities=13% Similarity=0.027 Sum_probs=30.7
Q ss_pred CCCcEEEecCCcCCcc-----CCCCCCC-CCCcCeEeecCCCCCccccc---hHhhhccccccEEeEcccc
Q 038576 239 KDLEKLSIFMCDNLTH-----LVPSSTS-FQNLTTLTVWGCHGMINVLT---SSTARSLVRLRQMTIKVCV 300 (411)
Q Consensus 239 ~~L~~L~l~~c~~l~~-----~~~~~~~-~~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~c~ 300 (411)
++|++|+++++. +.. +...... .++|+.|++++|. +++.+. ......+++|+.|++++|.
T Consensus 196 ~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 196 ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 467777776643 222 1111111 3467777776663 433322 1223556777777777765
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=1.1e-13 Score=129.73 Aligned_cols=142 Identities=20% Similarity=0.246 Sum_probs=116.4
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--Ccccc-ccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIG-DLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~-~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
.++.+|..+. ..+++|++++|.++. +..+. ++++|++|++++|.++.++. .+.++++|++|++++ +.++.++.
T Consensus 29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 105 (361)
T 2xot_A 29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDE 105 (361)
T ss_dssp CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECT
T ss_pred CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC-CcCCcCCH
Confidence 4677887665 468999999999988 45566 89999999999999997764 588999999999999 67888887
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc----ccCCCCcEEEEEec
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL----SFFKMLQRYRILIG 153 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~i~~~ 153 (411)
..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.+..+|..+ ..+++|+.|++..+
T Consensus 106 ~~~~~l~~L~~L~L~~N~i~~------------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 106 FLFSDLQALEVLLLYNNHIVV------------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCE------------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred HHhCCCcCCCEEECCCCcccE------------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence 778999999999999998865 34477889999999999999988888765 46889999998866
Q ss_pred CCccc
Q 038576 154 DSREY 158 (411)
Q Consensus 154 ~~~~~ 158 (411)
....+
T Consensus 174 ~l~~l 178 (361)
T 2xot_A 174 KLKKL 178 (361)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 65533
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.47 E-value=1.3e-13 Score=114.49 Aligned_cols=124 Identities=23% Similarity=0.211 Sum_probs=105.2
Q ss_pred CCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCcccc-chHHhcCCCCCCEEecCCCCCccccCc-ccccC
Q 038576 5 ALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEE-LAGEIGQLTQLRLLNLSKCFELKVIPP-NVISS 82 (411)
Q Consensus 5 ~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~L~~c~~~~~~~~-~~l~~ 82 (411)
.+|..+..+.+|++|++++|.++....+..+++|++|++++|.++. +|..++++++|++|++++ +.++.++. ..+..
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~ 118 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG-NKLKDISTLEPLKK 118 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS-SSCCSSGGGGGGSS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC-CccCcchhHHHHhc
Confidence 7888889999999999999998887788899999999999999996 788888899999999999 57888762 33899
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD 138 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 138 (411)
+++|++|++++|.+.. ++. .....+..+++|++|++++|....+|..
T Consensus 119 l~~L~~L~l~~N~l~~--~~~-------~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 119 LECLKSLDLFNCEVTN--LND-------YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CSCCCEEECCSSGGGT--STT-------HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCCCEEEeeCCcCcc--hHH-------HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9999999999998864 110 0014788999999999999998877754
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=6.4e-13 Score=116.32 Aligned_cols=145 Identities=21% Similarity=0.257 Sum_probs=122.1
Q ss_pred CcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
-+.++.+++.++. |..+. ++|++|++++|.++.+ |..++++++|++|++++ +.++.++...+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCC
Confidence 5678999988888 76554 8999999999999976 56789999999999999 678999877689999999999999
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC--cCCccceeEEE
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA--WDGISRISKLK 171 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~--~~~~~~l~~L~ 171 (411)
|.+.. .....+..+++|++|++++|.+..+|..+..+++|++|++..+....++. +....+++.|+
T Consensus 98 N~l~~------------l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 98 NQLTV------------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp SCCCC------------CCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCc------------cChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 98864 23356789999999999999999999999999999999999887766654 33367777777
Q ss_pred ecCC
Q 038576 172 LTNG 175 (411)
Q Consensus 172 ~~~~ 175 (411)
+.++
T Consensus 166 l~~N 169 (229)
T 3e6j_A 166 LFGN 169 (229)
T ss_dssp CTTS
T ss_pred eeCC
Confidence 7553
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=4.7e-13 Score=119.72 Aligned_cols=133 Identities=23% Similarity=0.277 Sum_probs=114.8
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
.++.+| .+..+.+|++|++++|.++. ++ +.++++|++|++++|.++.+|.... ++|++|++++ +.++.++. +
T Consensus 52 ~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~-N~l~~~~~--l 124 (263)
T 1xeu_A 52 NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDN-NELRDTDS--L 124 (263)
T ss_dssp CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCS-SCCSBSGG--G
T ss_pred Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccC-CccCCChh--h
Confidence 356777 78999999999999999999 44 9999999999999999998876433 9999999999 58888764 8
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 156 (411)
+.+++|++|++++|.+.. ...+..+++|++|++++|.+..+ ..+..+++|+.|++..+...
T Consensus 125 ~~l~~L~~L~Ls~N~i~~--------------~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKS--------------IVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTCTTCCEEECTTSCCCB--------------CGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred cCcccccEEECCCCcCCC--------------ChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence 999999999999998853 24688899999999999998777 67788999999999876544
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9e-14 Score=116.54 Aligned_cols=133 Identities=16% Similarity=0.151 Sum_probs=112.0
Q ss_pred hhhccccCcEEEecCCcCCCCccccccc-cCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCcc
Q 038576 9 SLGLLQNLQTLSLDDCELGDMAIIGDLK-KLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLE 87 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~l~~~~~l~~l~-~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~ 87 (411)
.+.++.+|++|++++|.++..+.+..+. +|++|++++|.++.+ ..++.+++|++|++++ +.++.+|...++.+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCCC
Confidence 3567889999999999998844566655 999999999999988 5789999999999999 688899877568999999
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc----cccCCCCcEEEEEecC
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD----LSFFKMLQRYRILIGD 154 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----l~~~~~L~~L~i~~~~ 154 (411)
+|++++|.+.. ++ ....+..+++|++|++++|....+|.. +..+++|+.|++..+.
T Consensus 92 ~L~L~~N~i~~--~~---------~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVE--LG---------DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCC--GG---------GGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCc--ch---------hhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999998852 22 123788999999999999998888875 7889999999877544
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=5.6e-15 Score=138.78 Aligned_cols=240 Identities=15% Similarity=0.097 Sum_probs=138.1
Q ss_pred ChhhhccccCcEEEecCCcCCC--C----ccccccc-cCcEEEeeCCccccc-hHHhcCC-----CCCCEEecCCCCCcc
Q 038576 7 PSSLGLLQNLQTLSLDDCELGD--M----AIIGDLK-KLVILALRGSDMEEL-AGEIGQL-----TQLRLLNLSKCFELK 73 (411)
Q Consensus 7 p~~l~~l~~L~~L~l~~~~l~~--~----~~l~~l~-~L~~L~L~~~~l~~l-p~~i~~l-----~~L~~L~L~~c~~~~ 73 (411)
|..+....+|++|++++|.+++ + ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++| .++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~ 93 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLS 93 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCC
Confidence 3334455568888888888776 3 5566777 888888888887743 4444443 88888888884 566
Q ss_pred ccCccc----ccCC-CCccEEEecccccccCccccccccccccchhhccCC-CCCCEEEEeeccCC-----cCCcccccC
Q 038576 74 VIPPNV----ISSL-SRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNL-SKLTSLEILIQDEK-----TLPRDLSFF 142 (411)
Q Consensus 74 ~~~~~~----l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~-----~~~~~l~~~ 142 (411)
..+... +..+ ++|++|++++|.+.. ..+ ......+..+ ++|++|++++|.+. .++..+..+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~-------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSS-KSS-------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGG-SCH-------HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCc-HHH-------HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 554332 3344 788888888887754 000 0112234443 57888888888755 233333444
Q ss_pred C-CCcEEEEEecCCccccCcCCccceeEEEecCCcccccccccccccccchhcccCCCcccccccc-chhhhchHhhhcc
Q 038576 143 K-MLQRYRILIGDSREYDAWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSF-KNVENGMEAMMRG 220 (411)
Q Consensus 143 ~-~L~~L~i~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~~~~~~~ 220 (411)
+ +|++|+++.+...... ...+. ..+..+ ++|++| +
T Consensus 166 ~~~L~~L~Ls~n~l~~~~----------------------------~~~l~---------~~l~~~~~~L~~L------~ 202 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKN----------------------------CAELA---------KFLASIPASVTSL------D 202 (362)
T ss_dssp CTTCCEEECTTSCGGGSC----------------------------HHHHH---------HHHHTSCTTCCEE------E
T ss_pred CccccEeeecCCCCchhh----------------------------HHHHH---------HHHHhCCCCCCEE------E
Confidence 4 7777776533321000 00000 001123 478888 8
Q ss_pred ccccccccc-----cccccccCCCCCcEEEecCCcCCccCC-----CCCCCCCCcCeEeecCCC--CCccccch---Hhh
Q 038576 221 INHRRELKQ-----IFKQESSNAKDLEKLSIFMCDNLTHLV-----PSSTSFQNLTTLTVWGCH--GMINVLTS---STA 285 (411)
Q Consensus 221 l~~~~~l~~-----~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~~~~~~L~~L~l~~c~--~l~~~~~~---~~~ 285 (411)
++++. +.+ +........++|++|+++++. +.... .....+++|+.|++++|. .++.-... ...
T Consensus 203 Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~ 280 (362)
T 3goz_A 203 LSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF 280 (362)
T ss_dssp CTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS
T ss_pred CCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHh
Confidence 88776 443 222111224689999999854 33221 122347889999998885 12111000 123
Q ss_pred hccccccEEeEcccc
Q 038576 286 RSLVRLRQMTIKVCV 300 (411)
Q Consensus 286 ~~l~~L~~L~l~~c~ 300 (411)
..+++|+.|+++++.
T Consensus 281 ~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 281 PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTCCEEEEECTTSCB
T ss_pred ccCCceEEEecCCCc
Confidence 456778888888765
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=4e-13 Score=114.25 Aligned_cols=120 Identities=21% Similarity=0.303 Sum_probs=60.3
Q ss_pred cEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH--hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 17 QTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE--IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 17 ~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~--i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
++++++++.++. |..+.. +|++|++++|.++.++.. ++++++|++|++++ +.++.++...++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCC
Confidence 455555555555 433322 555555555555544432 45555555555555 344444333355555555555555
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEE
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRIL 151 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~ 151 (411)
|.+.. ..+..+..+++|++|++++|.+..+ |..+..+++|++|++.
T Consensus 88 N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 88 NKIKE------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CCCCE------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CcCCc------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 55543 1223345555555555555554433 3344555555555554
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=8.8e-13 Score=130.17 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=79.4
Q ss_pred cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
+|++|++++|.++. |..+. ++|++|++++|.++.+| +.+++|++|++++ +.++.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACD-NRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC--CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccC-CCCCCcch--hhc--CCCEEECCC
Confidence 78888888888877 55453 67888888888888777 5578888888888 46777775 444 888888888
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecC
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~ 154 (411)
|.+.. +| . .+++|+.|++++|.+..+|. .+++|+.|+++.+.
T Consensus 130 N~l~~--lp-----------~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 130 NQLTM--LP-----------E---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SCCSC--CC-----------C---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred CcCCC--CC-----------C---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC
Confidence 87653 22 2 56778888888887766665 45666666665333
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.42 E-value=5.1e-13 Score=116.16 Aligned_cols=118 Identities=17% Similarity=0.285 Sum_probs=102.7
Q ss_pred CCCCCh-hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576 3 LLALPS-SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 3 l~~lp~-~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
++.+|. .|..+.+|++|++++|.++. +..|.++++|++|++++|.++.+|.. +..+++|++|++++ +.++.++..
T Consensus 44 i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~ 122 (220)
T 2v9t_B 44 IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVD 122 (220)
T ss_dssp CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHH
Confidence 455654 68999999999999999988 78899999999999999999988876 68899999999999 688888766
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK 133 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 133 (411)
.+..+++|++|++++|.+.. .....+..+++|+++++++|...
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQT------------IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSC------------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred HcCCCCCCCEEECCCCcCCE------------ECHHHHhCCCCCCEEEeCCCCcC
Confidence 69999999999999999875 33356888999999999998743
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.3e-13 Score=112.12 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=105.3
Q ss_pred ccccCcEEEecCCcCC--C-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc-cCcccccCCCCcc
Q 038576 12 LLQNLQTLSLDDCELG--D-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV-IPPNVISSLSRLE 87 (411)
Q Consensus 12 ~l~~L~~L~l~~~~l~--~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~-~~~~~l~~L~~L~ 87 (411)
...+|+.|++++|.++ . +..++.+++|++|++++|.++.+ ..++++++|++|++++ +.+.. +|.. ++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVL-AEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHH-HHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHH-hhhCCCCC
Confidence 3478999999999988 4 77889999999999999999987 6789999999999999 56766 5543 77899999
Q ss_pred EEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc----ccccCCCCcEEEE
Q 038576 88 ELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR----DLSFFKMLQRYRI 150 (411)
Q Consensus 88 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~i 150 (411)
+|++++|.+.. + ..+..+..+++|++|++++|....++. .+..+++|+.|++
T Consensus 92 ~L~ls~N~i~~--~---------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 92 HLNLSGNKIKD--L---------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTSCCCS--H---------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEECCCCcCCC--h---------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999998764 1 123778999999999999999888776 5778899998865
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=111.33 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=97.4
Q ss_pred cEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccc
Q 038576 17 QTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSP 95 (411)
Q Consensus 17 ~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~ 95 (411)
++++++++.++. |..+. .+|++|++++|.++.+|..+.++++|++|++++ +.++.++...+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCc
Confidence 678888888887 65543 588888888888888888888888888888888 67888876668888888888888888
Q ss_pred cccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-cccCCCCcEEEEEecC
Q 038576 96 IQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRILIGD 154 (411)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~i~~~~ 154 (411)
+.. ..+..+..+++|++|++++|.+..++.. +..+++|+.|++..+.
T Consensus 90 l~~------------i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRC------------IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCB------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCE------------eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 764 3335678888888888888888777764 6678888888887544
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.4e-12 Score=110.85 Aligned_cols=117 Identities=26% Similarity=0.340 Sum_probs=100.7
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNV 79 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~ 79 (411)
.++.+|..+. .+|++|++++|.++. |..+.++++|++|++++|.++.++. .+.++++|++|++++ +.++.++...
T Consensus 21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~ 97 (193)
T 2wfh_A 21 GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRT 97 (193)
T ss_dssp CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTT
T ss_pred CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHH
Confidence 4677887664 589999999999998 8899999999999999999997764 589999999999999 6888888777
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK 133 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 133 (411)
+..+++|++|++++|.+.. .....+..+++|+.+++.+|...
T Consensus 98 f~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISV------------VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTCTTCCEEECCSSCCCB------------CCTTTTTTCTTCCEEECCSSCEE
T ss_pred hCCCCCCCEEECCCCCCCe------------eChhhhhcCccccEEEeCCCCee
Confidence 9999999999999998864 22356888999999999988643
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=114.08 Aligned_cols=118 Identities=15% Similarity=0.220 Sum_probs=101.3
Q ss_pred CCCCC--hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCc
Q 038576 3 LLALP--SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 3 l~~lp--~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
++.++ ..|.++.+|++|++++|.++. +..|.++++|++|++++|.++.++. .++.+++|++|++++ +.+..++.
T Consensus 44 l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 122 (220)
T 2v70_A 44 FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGN 122 (220)
T ss_dssp CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCT
T ss_pred CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECH
Confidence 44553 348999999999999999998 4589999999999999999997765 488999999999999 67888865
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK 133 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 133 (411)
..+..+++|++|++++|.+.. ..+..+..+++|++|++++|...
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITT------------VAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCC------------BCTTTTTTCTTCCEEECCSCCEE
T ss_pred hHcCCCccCCEEECCCCcCCE------------ECHHHhcCCCCCCEEEecCcCCc
Confidence 559999999999999999875 34578889999999999998743
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=2.7e-12 Score=110.47 Aligned_cols=131 Identities=22% Similarity=0.302 Sum_probs=107.8
Q ss_pred CCCCChh-hhccccCcEEEecCCcCCC-C-ccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576 3 LLALPSS-LGLLQNLQTLSLDDCELGD-M-AIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 3 l~~lp~~-l~~l~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
++.+|.. +.++.+|++|++++|.++. + ..+..+++|++|++++|.++.+|.. ++++++|++|++++ +.++.++..
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~ 118 (208)
T 2o6s_A 40 LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDG 118 (208)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHh
Confidence 4566654 7899999999999999988 4 5578999999999999999988765 68999999999999 688888877
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEe
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILI 152 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~ 152 (411)
.+..+++|++|++++|.+.. .....+.++++|+++++++|... +.+++|+.|.++.
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~------------~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKS------------VPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWI 174 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSC------------CCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHH
T ss_pred HhccCCcCCEEECCCCccce------------eCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHH
Confidence 68899999999999998764 22355788999999999998543 3456677766543
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=5.9e-13 Score=108.23 Aligned_cols=113 Identities=22% Similarity=0.207 Sum_probs=95.2
Q ss_pred CCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCcccc-chHHhcCCCCCCEEecCCCCCccccC--ccccc
Q 038576 5 ALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEE-LAGEIGQLTQLRLLNLSKCFELKVIP--PNVIS 81 (411)
Q Consensus 5 ~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~-lp~~i~~l~~L~~L~L~~c~~~~~~~--~~~l~ 81 (411)
.+|..+..+.+|++|++++|.++....++.+++|++|++++|.++. +|..++++++|++|++++ +.++.++ .. ++
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~-N~i~~~~~~~~-~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEP-LK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-SCCCSHHHHGG-GG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-CcCCChHHHHH-Hh
Confidence 7888889999999999999998887788999999999999999996 888888899999999999 5788764 44 89
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEe
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEIL 128 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 128 (411)
.+++|++|++++|.+.. ++. .....+..+++|++|+++
T Consensus 111 ~l~~L~~L~l~~N~l~~--~~~-------~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTN--LND-------YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTCGGGG--STT-------HHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCCcccc--hHH-------HHHHHHHHCCCcccccCC
Confidence 99999999999998864 110 001468889999998764
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=1.1e-14 Score=124.70 Aligned_cols=133 Identities=18% Similarity=0.243 Sum_probs=104.8
Q ss_pred CCCCChhhhccccCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccC
Q 038576 3 LLALPSSLGLLQNLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISS 82 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~ 82 (411)
++.+|..+.++.+|++|++++|.++..+.+..+++|++|++++|.++.+|..++.+++|++|++++ +.++.+| . +..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~-~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-G-IEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-H-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-c-ccc
Confidence 566777889999999999999988883388888999999999998888888888888999999998 5777777 3 788
Q ss_pred CCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcc-----------cccCCCCcEEE
Q 038576 83 LSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-----------LSFFKMLQRYR 149 (411)
Q Consensus 83 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----------l~~~~~L~~L~ 149 (411)
+++|++|++++|.+.. ++ ....+..+++|+++++++|.....++. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~i~~--~~---------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITN--WG---------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCC--HH---------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCcCCc--hh---------HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8999999999988753 11 124678889999999998875443221 56778888775
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=5.3e-12 Score=124.59 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=102.4
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
.++.+|..+. .+|++|++++|.++. | +.+++|++|++++|.++.+|. +.+ +|++|++++ +.++.+|.
T Consensus 70 ~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~-N~l~~lp~--- 137 (571)
T 3cvr_A 70 NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN-NQLTMLPE--- 137 (571)
T ss_dssp CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS-SCCSCCCC---
T ss_pred CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC-CcCCCCCC---
Confidence 4567887663 789999999999998 6 567999999999999999988 665 999999999 67888886
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 156 (411)
.+++|++|++++|.+.. +| . .+++|++|++++|.+..+|. +. ++|+.|+++.+...
T Consensus 138 -~l~~L~~L~Ls~N~l~~--lp-----------~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 138 -LPALLEYINADNNQLTM--LP-----------E---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp -CCTTCCEEECCSSCCSC--CC-----------C---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS
T ss_pred -cCccccEEeCCCCccCc--CC-----------C---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC
Confidence 68999999999998863 22 2 57899999999999888888 54 88898888755433
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2.4e-12 Score=109.37 Aligned_cols=117 Identities=24% Similarity=0.371 Sum_probs=101.6
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-Cc--cccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MA--IIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPP 77 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~ 77 (411)
.++.+|..+.. +|++|++++|.++. +. .++.+++|++|++++|.++.+ |..++++++|++|++++ +.++.++.
T Consensus 19 ~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 95 (192)
T 1w8a_A 19 GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISN 95 (192)
T ss_dssp CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECS
T ss_pred CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCH
Confidence 46788877654 99999999999988 43 489999999999999999976 67899999999999999 68888887
Q ss_pred ccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCC
Q 038576 78 NVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEK 133 (411)
Q Consensus 78 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 133 (411)
..++.+++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 96 ~~~~~l~~L~~L~L~~N~l~~------------~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 96 KMFLGLHQLKTLNLYDNQISC------------VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSSTTCTTCCEEECCSSCCCE------------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred HHhcCCCCCCEEECCCCcCCe------------eCHHHhhcCCCCCEEEeCCCCcc
Confidence 778999999999999999875 34578889999999999998754
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=4e-12 Score=106.48 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=67.9
Q ss_pred CcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
.+.++++++.++. |..+. ++|++|++++|.++.+|.. ++++++|++|++++ +.++.++...++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCC
Confidence 3455666655555 43322 4566666666666555433 45566666666666 355555554455666666666666
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc-ccCCCCcEEEEEecC
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRILIGD 154 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~i~~~~ 154 (411)
|.+.. .....+..+++|++|++++|.+..+|... ..+++|++|++..+.
T Consensus 86 N~l~~------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQS------------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCC------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccc------------cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 65543 12233455666666666666655555542 445666666665443
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=2.1e-12 Score=121.03 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=105.4
Q ss_pred CcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHH-hc-CCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGE-IG-QLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~-~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
-+.++.+++.++. |..+. ..+++|++++|.++.++.. +. ++++|++|++++ +.+..++...+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCEEECC
Confidence 3689999999988 76554 4689999999999988765 55 899999999999 68888887669999999999999
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC-CcccccCCCCcEEEEEecCCcccc
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRILIGDSREYD 159 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~i~~~~~~~~~ 159 (411)
+|.+.. .....+.++++|++|++++|.+..+ +..+..+++|++|++..+....++
T Consensus 97 ~N~l~~------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 97 SNHLHT------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SSCCCE------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCcCCc------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 998864 2335688899999999999997776 456778899999988766655444
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=3e-12 Score=126.78 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=100.0
Q ss_pred cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
.|++|++++|.++. |. ++.+++|++|++++|.++.+|..++++++|++|++++ +.++.+| . ++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~-l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-G-VANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-G-GTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-c-cCCCCCCcEEECCC
Confidence 58899999999888 54 8999999999999999999999999999999999999 6788888 4 89999999999999
Q ss_pred cccccCccccccccccccc-hhhccCCCCCCEEEEeeccCCcCCccc----ccCCCCcEEE
Q 038576 94 SPIQWGKVEGVDGERRNAS-LDELNNLSKLTSLEILIQDEKTLPRDL----SFFKMLQRYR 149 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~ 149 (411)
|.+.. .. +..++.+++|+.|++++|.+..+|+.. ..+++|+.|+
T Consensus 518 N~l~~------------~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQ------------SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCS------------SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCC------------CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 98865 22 578889999999999999877776643 2367888774
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=4.6e-12 Score=117.19 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=61.9
Q ss_pred CCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCCCC-eeecCCCcCCce
Q 038576 262 FQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSELK-ELNLSNLQSLTS 340 (411)
Q Consensus 262 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~ 340 (411)
+++|+.+++.++. ++.++. ....++++|+.|++.+. ++.+... .+..+++|+ .+.+.+ +++.
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~-~aF~~~~~L~~l~l~~n--i~~I~~~-----------aF~~~~~L~~~l~l~~--~l~~ 287 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPD-FTFAQKKYLLKIKLPHN--LKTIGQR-----------VFSNCGRLAGTLELPA--SVTA 287 (329)
T ss_dssp CTTCCEEECTTBC-CCEECT-TTTTTCTTCCEEECCTT--CCEECTT-----------TTTTCTTCCEEEEECT--TCCE
T ss_pred cCCCeEEECCCCC-cceecH-hhhhCCCCCCEEECCcc--cceehHH-----------HhhCChhccEEEEEcc--cceE
Confidence 5667777776543 555533 34566777777777663 5555332 344567777 777776 6666
Q ss_pred eccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEE
Q 038576 341 FSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQ 383 (411)
Q Consensus 341 ~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~ 383 (411)
+ ...+. .+|++|++|++.+ ++++.++... ..+++|+.|+
T Consensus 288 I--~~~aF-~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 I--EFGAF-MGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp E--CTTTT-TTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred E--chhhh-hCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 6 22222 4577888887765 4677776643 3677777765
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.6e-11 Score=101.44 Aligned_cols=119 Identities=20% Similarity=0.346 Sum_probs=98.5
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|++|++++|.++. +..++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.++.++..
T Consensus 18 ~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~ 94 (177)
T 2o6r_A 18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNG 94 (177)
T ss_dssp CCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHH
Confidence 3667776554 689999999999888 45678999999999999999988765 68999999999999 688888877
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcC
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTL 135 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 135 (411)
.++.+++|++|++++|.+.. .....+..+++|+++++++|.....
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~------------~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKS------------VPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSC------------CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred HhhCCcccCEEECcCCcceE------------eCHHHhcCCcccCEEEecCCCeecc
Confidence 67899999999999998864 2224568899999999999976543
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=7.2e-12 Score=104.81 Aligned_cols=119 Identities=17% Similarity=0.226 Sum_probs=96.4
Q ss_pred CCCCChhhhccc-cCcEEEecCCcCCCCccccccccCcEEEeeCCccccchHHh-cCCCCCCEEecCCCCCccccCc-cc
Q 038576 3 LLALPSSLGLLQ-NLQTLSLDDCELGDMAIIGDLKKLVILALRGSDMEELAGEI-GQLTQLRLLNLSKCFELKVIPP-NV 79 (411)
Q Consensus 3 l~~lp~~l~~l~-~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~l~~lp~~i-~~l~~L~~L~L~~c~~~~~~~~-~~ 79 (411)
++.+|. +..+. +|++|++++|.++..+.++.+++|++|++++|.++.+|..+ +.+++|++|++++ +.++.+|. ..
T Consensus 31 l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~ 108 (176)
T 1a9n_A 31 IPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDP 108 (176)
T ss_dssp CCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGGG
T ss_pred CchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC-CcCCcchhhHh
Confidence 456654 55555 99999999999888778899999999999999999888654 8999999999999 57888886 23
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccC
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDE 132 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 132 (411)
++.+++|++|++++|.+.. ++. .....+..+++|+.++++.+..
T Consensus 109 l~~l~~L~~L~l~~N~i~~--~~~-------~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 109 LASLKSLTYLCILRNPVTN--KKH-------YRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GGGCTTCCEEECCSSGGGG--STT-------HHHHHHHHCTTCSEETTEECCH
T ss_pred hhcCCCCCEEEecCCCCCC--cHh-------HHHHHHHHCCccceeCCCcCCH
Confidence 8899999999999998753 220 0012478899999999998863
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=2e-11 Score=120.83 Aligned_cols=112 Identities=21% Similarity=0.211 Sum_probs=95.3
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCcccc--Ccc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVI--PPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~--~~~ 78 (411)
.++.+|. ++++.+|++|++++|.++. |..++++++|++|++++|.++.+| .++++++|++|++++ +.++.+ |..
T Consensus 452 ~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~ 528 (567)
T 1dce_A 452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQP 528 (567)
T ss_dssp CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGG
T ss_pred CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHH
Confidence 4677887 9999999999999999999 899999999999999999999998 899999999999999 688888 665
Q ss_pred cccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEE
Q 038576 79 VISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLE 126 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 126 (411)
++.+++|++|++++|.+.. ++. .....+..+++|+.|+
T Consensus 529 -l~~l~~L~~L~L~~N~l~~--~~~-------~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 529 -LVSCPRLVLLNLQGNSLCQ--EEG-------IQERLAEMLPSVSSIL 566 (567)
T ss_dssp -GGGCTTCCEEECTTSGGGG--SSS-------CTTHHHHHCTTCSEEE
T ss_pred -HhcCCCCCEEEecCCcCCC--Ccc-------HHHHHHHHCcccCccC
Confidence 9999999999999998864 220 1223344578888875
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=5.5e-12 Score=128.77 Aligned_cols=114 Identities=26% Similarity=0.240 Sum_probs=87.2
Q ss_pred CChhhhccccCcEEEecCCcCCC-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCC
Q 038576 6 LPSSLGLLQNLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLS 84 (411)
Q Consensus 6 lp~~l~~l~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~ 84 (411)
.|..+..+..|++|+|++|.+.. +..+.++++|++|+|++|.++.+|..++++++|++|+|++ +.++.+|.. ++.|+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAE-LGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSS-GGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChh-hcCCC
Confidence 35667788888888888888877 7777788888888888888888888888888888888888 567788876 78888
Q ss_pred CccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc
Q 038576 85 RLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT 134 (411)
Q Consensus 85 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 134 (411)
+|++|++++|.+.. .+..++++++|++|++++|.+..
T Consensus 294 ~L~~L~L~~N~l~~-------------lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 294 QLKYFYFFDNMVTT-------------LPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp TCSEEECCSSCCCC-------------CCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCEEECCCCCCCc-------------cChhhhcCCCccEEeCCCCccCC
Confidence 88888888887652 33568888888888888887553
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.23 E-value=4.8e-11 Score=99.52 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=89.6
Q ss_pred CcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 16 LQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 16 L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
-+.++++++.++. |..+. .+|++|++++|.++.+ |..++++++|++|++++ +.++.+|..++.++++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCC
Confidence 4789999999888 76664 7999999999999977 55688999999999999 689999887678999999999999
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCccc
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL 139 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l 139 (411)
|.+.. .....+..+++|++|++++|.+...+..+
T Consensus 91 N~l~~------------l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 91 NHLKS------------IPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp SCCCC------------CCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred Cccce------------eCHHHhccccCCCEEEeCCCCcccccccH
Confidence 98864 22245888999999999999877665533
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=2.8e-11 Score=100.99 Aligned_cols=93 Identities=24% Similarity=0.414 Sum_probs=83.9
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|++|++++|.++. +..|.++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+|..
T Consensus 23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~ 99 (174)
T 2r9u_A 23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRG 99 (174)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHH
Confidence 4678888775 799999999999988 67899999999999999999999876 58999999999999 789999987
Q ss_pred cccCCCCccEEEecccccc
Q 038576 79 VISSLSRLEELYIGQSPIQ 97 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~ 97 (411)
.+..+++|++|++++|.+.
T Consensus 100 ~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTCTTCSEEECCSSCBC
T ss_pred HhccccCCCEEEeCCCCcc
Confidence 7899999999999999875
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.22 E-value=5.3e-11 Score=98.86 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=89.0
Q ss_pred cCcEEEecCCcCCC-CccccccccCcEEEeeCCccccc-hHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 15 NLQTLSLDDCELGD-MAIIGDLKKLVILALRGSDMEEL-AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 15 ~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
..++++++++.++. |..+. .+|++|++++|.++.+ |..++++++|++|++++ +.++.+|..++..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECC
Confidence 46789999999988 76663 7899999999999977 55688999999999999 68889988767899999999999
Q ss_pred ccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc
Q 038576 93 QSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR 137 (411)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 137 (411)
+|.+.. .....+.++++|++|++++|.+...+.
T Consensus 87 ~N~l~~------------~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKS------------IPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCC------------CCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCE------------eCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 998864 223568889999999999987655443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=4.5e-11 Score=99.31 Aligned_cols=93 Identities=26% Similarity=0.418 Sum_probs=83.5
Q ss_pred CCCCCChhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCCCCccccCcc
Q 038576 2 HLLALPSSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 2 ~l~~lp~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
.++.+|..+. .+|++|++++|.++. +..|.++++|++|++++|+++.+|.. +.++++|++|++++ +.++.++..
T Consensus 20 ~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~ 96 (170)
T 3g39_A 20 SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRG 96 (170)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT
T ss_pred CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHH
Confidence 4678887764 799999999999988 67799999999999999999988875 68999999999999 689999887
Q ss_pred cccCCCCccEEEecccccc
Q 038576 79 VISSLSRLEELYIGQSPIQ 97 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~~ 97 (411)
++..+++|++|++++|.+.
T Consensus 97 ~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 97 AFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTTCTTCCEEECCSSCBC
T ss_pred HhcCCCCCCEEEeCCCCCC
Confidence 7999999999999999875
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2e-11 Score=124.69 Aligned_cols=113 Identities=19% Similarity=0.120 Sum_probs=98.6
Q ss_pred CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecccccccCccccccccc
Q 038576 29 MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGER 108 (411)
Q Consensus 29 ~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 108 (411)
+..+..+.+|++|+|++|.+..+|..+.++++|++|+|++ +.++.+|.. ++.+++|++|++++|.+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~---------- 284 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAE-IKNLSNLRVLDLSHNRLTS---------- 284 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGG-GGGGTTCCEEECTTSCCSS----------
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChh-hhCCCCCCEEeCcCCcCCc----------
Confidence 5678889999999999999999999999999999999999 578899977 8999999999999999863
Q ss_pred cccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCc
Q 038576 109 RNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSR 156 (411)
Q Consensus 109 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~ 156 (411)
.+..++++++|++|++++|.+..+|..++.+++|+.|++..+...
T Consensus 285 ---lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 285 ---LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ---CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred ---cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 347889999999999999999999999999999999999877654
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=4.9e-10 Score=103.52 Aligned_cols=103 Identities=11% Similarity=0.017 Sum_probs=69.9
Q ss_pred CCCCCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhcccccc-EEeEcccccccccccccCCCCC
Q 038576 237 NAKDLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLR-QMTIKVCVMITEIVADEDDEGD 314 (411)
Q Consensus 237 ~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~ 314 (411)
.+++|+++++.++. +.... .....+++|+++++.++ ++.++. ....++++|+ .+++.+ .++.+...
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-~aF~~~~~L~~~l~l~~--~l~~I~~~------ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-RVFSNCGRLAGTLELPA--SVTAIEFG------ 291 (329)
T ss_dssp HCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECT-TTTTTCTTCCEEEEECT--TCCEECTT------
T ss_pred hcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehH-HHhhCChhccEEEEEcc--cceEEchh------
Confidence 37889999998643 43333 23445889999999875 777744 3467889999 999987 46666443
Q ss_pred CccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEee
Q 038576 315 NYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVV 360 (411)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i 360 (411)
.+..+++|+.+++.. .+++.++ ..+. .++++|+.|+.
T Consensus 292 -----aF~~c~~L~~l~l~~-n~i~~I~--~~aF-~~~~~L~~ly~ 328 (329)
T 3sb4_A 292 -----AFMGCDNLRYVLATG-DKITTLG--DELF-GNGVPSKLIYK 328 (329)
T ss_dssp -----TTTTCTTEEEEEECS-SCCCEEC--TTTT-CTTCCCCEEEC
T ss_pred -----hhhCCccCCEEEeCC-CccCccc--hhhh-cCCcchhhhcc
Confidence 445688999999866 4678872 2222 45777877753
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.08 E-value=1.6e-12 Score=110.99 Aligned_cols=127 Identities=21% Similarity=0.252 Sum_probs=99.4
Q ss_pred hhccccCcEEEecCCcCCC--------CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCccccc
Q 038576 10 LGLLQNLQTLSLDDCELGD--------MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~--------~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
+.....++.++++++.+.. +..++.+++|++|++++|.++.+| .++++++|++|++++ +.++.+|.. +.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~-~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGR-NLIKKIENL-DA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEE-EEECSCSSH-HH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCC-CCcccccch-hh
Confidence 3344555555555555443 337889999999999999999888 888999999999999 578888864 77
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCc--ccccCCCCcEEEEEec
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR--DLSFFKMLQRYRILIG 153 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~i~~~ 153 (411)
.+++|++|++++|.+.. ...+..+++|++|++++|.+..++. .+..+++|++|++..+
T Consensus 91 ~~~~L~~L~L~~N~l~~--------------l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS--------------LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHCSEEEEEEEECCC--------------HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCcCCEEECcCCcCCc--------------CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 78999999999998753 2367788899999999998877654 6778899999988644
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=1.4e-09 Score=101.26 Aligned_cols=91 Identities=26% Similarity=0.272 Sum_probs=52.0
Q ss_pred CCCCChhhhccccCcEEEecC-CcCCC-C-ccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcc
Q 038576 3 LLALPSSLGLLQNLQTLSLDD-CELGD-M-AIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPN 78 (411)
Q Consensus 3 l~~lp~~l~~l~~L~~L~l~~-~~l~~-~-~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~ 78 (411)
++.+|. |..+.+|++|+|++ |.++. + ..|+++++|++|+|++|.|+.+|+ .|+++++|++|+|++ +.+..+|..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHH
Confidence 455665 66666666666664 55555 2 445666666666666666664433 355666666666666 455555554
Q ss_pred cccCCCCccEEEeccccc
Q 038576 79 VISSLSRLEELYIGQSPI 96 (411)
Q Consensus 79 ~l~~L~~L~~L~l~~~~~ 96 (411)
.+..++ |++|++.+|.+
T Consensus 99 ~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp TTCSCC-CCEEECCSSCC
T ss_pred HcccCC-ceEEEeeCCCc
Confidence 343343 66666666554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.81 E-value=1.7e-07 Score=88.73 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=79.6
Q ss_pred hhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCC
Q 038576 9 SLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSR 85 (411)
Q Consensus 9 ~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~ 85 (411)
.|.++ +|+.+.+..+ ++. ...|.++ +|+.+.+.. .++.++ ..+.+|++|+.+++.+ +.++.++..++. ..+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT-TCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC-CcceEechhhEe-ecc
Confidence 36665 6888888765 444 3455553 688888876 555554 3477888888888887 578888777665 578
Q ss_pred ccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576 86 LEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 151 (411)
Q Consensus 86 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 151 (411)
|+.+.+..+ +.. + ....+.++++|+.+++..+ ...+......-.+|+.+.+.
T Consensus 205 L~~l~lp~~-l~~--I----------~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp 256 (401)
T 4fdw_A 205 IEEVLLPVT-LKE--I----------GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP 256 (401)
T ss_dssp CSEEECCTT-CCE--E----------CTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE
T ss_pred cCEEEeCCc-hhe--e----------hhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC
Confidence 888888654 221 2 2366777788888887653 33333332223677877774
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.80 E-value=1.2e-08 Score=94.78 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=78.1
Q ss_pred EEEecCC-cCCC-CccccccccCcEEEeeC-Cccccch-HHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEecc
Q 038576 18 TLSLDDC-ELGD-MAIIGDLKKLVILALRG-SDMEELA-GEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQ 93 (411)
Q Consensus 18 ~L~l~~~-~l~~-~~~l~~l~~L~~L~L~~-~~l~~lp-~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~ 93 (411)
.++.+++ .++. |. +..+.+|++|+|++ |.++.+| ..++++++|++|+|++ +.+..++...|..+++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCC
Confidence 4688887 7888 77 88888999999986 8888776 4588899999999998 578888776688899999999998
Q ss_pred cccccCccccccccccccchhhccCCCCCCEEEEeeccCCc
Q 038576 94 SPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT 134 (411)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 134 (411)
|.+.. ++ ...+..+. |+.|++.+|.+..
T Consensus 90 N~l~~--~~----------~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALES--LS----------WKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSC--CC----------STTTCSCC-CCEEECCSSCCCC
T ss_pred Cccce--eC----------HHHcccCC-ceEEEeeCCCccC
Confidence 88764 22 13344444 8888888776543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.76 E-value=2.4e-07 Score=87.63 Aligned_cols=130 Identities=15% Similarity=0.056 Sum_probs=67.6
Q ss_pred cccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCC
Q 038576 234 ESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEG 313 (411)
Q Consensus 234 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 313 (411)
....+..++.+.+.... ..-.......++.++.+...... + +......+.+|+.+.+.+ .++.+...
T Consensus 248 ~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~----i-~~~~F~~~~~L~~i~l~~--~i~~I~~~----- 314 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVI----V-PEKTFYGCSSLTEVKLLD--SVKFIGEE----- 314 (394)
T ss_dssp TTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSE----E-CTTTTTTCTTCCEEEECT--TCCEECTT-----
T ss_pred cccccccceeEEcCCCc-ceeeccccccccccceeccCcee----e-cccccccccccccccccc--ccceechh-----
Confidence 33456677777765421 11111122225566666554321 1 122345567777777753 24444322
Q ss_pred CCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEecccc
Q 038576 314 DNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMSLVDE 389 (411)
Q Consensus 314 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~~~c~ 389 (411)
.+..+++|+.+++.+ +++.+ ...+. .+|.+|+.+.+.. .++.+.... ..+++|+++.+..+..
T Consensus 315 ------aF~~c~~L~~i~lp~--~v~~I--~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~~~ 378 (394)
T 4fs7_A 315 ------AFESCTSLVSIDLPY--LVEEI--GKRSF-RGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKRLE 378 (394)
T ss_dssp ------TTTTCTTCCEECCCT--TCCEE--CTTTT-TTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGGGG
T ss_pred ------hhcCCCCCCEEEeCC--cccEE--hHHhc-cCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCCCE
Confidence 334567777777753 46666 12222 4567777777754 366665543 3667788887753433
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.69 E-value=1.1e-08 Score=84.00 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=34.2
Q ss_pred cCcEEEecCCcCCC--CccccccccCcEEEeeCC-cccc-chHHhcCC----CCCCEEecCCCCCccccCcccccCCCCc
Q 038576 15 NLQTLSLDDCELGD--MAIIGDLKKLVILALRGS-DMEE-LAGEIGQL----TQLRLLNLSKCFELKVIPPNVISSLSRL 86 (411)
Q Consensus 15 ~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~-~l~~-lp~~i~~l----~~L~~L~L~~c~~~~~~~~~~l~~L~~L 86 (411)
.|+.||+++|.+++ ...+..+++|++|+|++| .+++ --..++.+ ++|++|++++|..+++-.-..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44455555544444 344444444555555444 2431 11223322 2344444444444444332224444444
Q ss_pred cEEEeccc
Q 038576 87 EELYIGQS 94 (411)
Q Consensus 87 ~~L~l~~~ 94 (411)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=6.6e-07 Score=84.59 Aligned_cols=227 Identities=11% Similarity=0.090 Sum_probs=150.3
Q ss_pred CCCC-hhhhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccccCcccc
Q 038576 4 LALP-SSLGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKVIPPNVI 80 (411)
Q Consensus 4 ~~lp-~~l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l 80 (411)
+.++ ..|.++ +|+.+.+.+ .++. ...|.++.+|+.+++.+++++.++.....+.+|+.+.+.. .++.++..++
T Consensus 147 ~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF 222 (401)
T 4fdw_A 147 KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAF 222 (401)
T ss_dssp CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTT
T ss_pred cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHh
Confidence 3444 236665 699999986 5665 5779999999999999999999987755579999999985 4889988889
Q ss_pred cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEEecCCcccc
Q 038576 81 SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRILIGDSREYD 159 (411)
Q Consensus 81 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~~~~~~~~~ 159 (411)
..+++|+.+++..+- . .+. ...+.+ .+|+.+.+.. ....++ ..+..|++|+.+.+..+.....
T Consensus 223 ~~~~~L~~l~l~~~l-~--~I~----------~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~- 286 (401)
T 4fdw_A 223 LKTSQLKTIEIPENV-S--TIG----------QEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD- 286 (401)
T ss_dssp TTCTTCCCEECCTTC-C--EEC----------TTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC-
T ss_pred hCCCCCCEEecCCCc-c--Ccc----------cccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC-
Confidence 999999999998752 2 122 245555 6899999954 344443 4567899999999873321100
Q ss_pred CcCCccceeEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCC
Q 038576 160 AWDGISRISKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAK 239 (411)
Q Consensus 160 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~ 239 (411)
....+ ....+.+|++|+.+ .+.+ +++.+....+..++
T Consensus 287 ------------------------------~~~~I-----~~~aF~~c~~L~~l------~l~~--~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 287 ------------------------------PEAMI-----HPYCLEGCPKLARF------EIPE--SIRILGQGLLGGNR 323 (401)
T ss_dssp ------------------------------TTCEE-----CTTTTTTCTTCCEE------CCCT--TCCEECTTTTTTCC
T ss_pred ------------------------------cccEE-----CHHHhhCCccCCeE------EeCC--ceEEEhhhhhcCCC
Confidence 00000 01123466777777 7763 36666666667788
Q ss_pred CCcEEEecCCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhcc-ccccEEeEcc
Q 038576 240 DLEKLSIFMCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSL-VRLRQMTIKV 298 (411)
Q Consensus 240 ~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~ 298 (411)
+|+.+.+.. ++.... .....+ +|+.+.+.++.. ..+.... ...+ .+++.|.+..
T Consensus 324 ~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~-~~l~~~~-F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 324 KVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTP-PQVFEKV-WYGFPDDITVIRVPA 379 (401)
T ss_dssp SCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSC-CBCCCSS-CCCSCTTCCEEEECG
T ss_pred CccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCC-ccccccc-ccCCCCCccEEEeCH
Confidence 888888853 233222 223336 889998877643 3332222 2334 3677787765
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.53 E-value=4.9e-08 Score=80.23 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=47.6
Q ss_pred CCcEEEecCCcCCc-cCCCCCCCCCCcCeEeecCCCCCccccchHhhhc----cccccEEeEcccccccccccccCCCCC
Q 038576 240 DLEKLSIFMCDNLT-HLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARS----LVRLRQMTIKVCVMITEIVADEDDEGD 314 (411)
Q Consensus 240 ~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----l~~L~~L~l~~c~~l~~~~~~~~~~~~ 314 (411)
+|++|++++|.... ++... ..+++|+.|++++|..+++..... +.. .++|++|++++|.++++.....
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~----- 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKGIIA----- 134 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHHHHH-----
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHHHHH-----
Confidence 46677777665322 22222 236677777777777666643222 222 2456777777766655542211
Q ss_pred CccCccccccCCCCeeecCCCcCCce
Q 038576 315 NYAAQDEIVFSELKELNLSNLQSLTS 340 (411)
Q Consensus 315 ~~~~~~~~~~~~L~~L~l~~c~~l~~ 340 (411)
...+++|++|++++|+.+++
T Consensus 135 ------L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 ------LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp ------GGGCTTCCEEEEESCTTCCC
T ss_pred ------HhcCCCCCEEECCCCCCCCc
Confidence 12356666666666666655
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.49 E-value=1.8e-08 Score=94.48 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=56.9
Q ss_pred ccCcEEEecCCcCCC--Cccccc-----cccCcEEEeeCCcccc--chHHhcCCCCCCEEecCCCCCccccCcccc----
Q 038576 14 QNLQTLSLDDCELGD--MAIIGD-----LKKLVILALRGSDMEE--LAGEIGQLTQLRLLNLSKCFELKVIPPNVI---- 80 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~--~~~l~~-----l~~L~~L~L~~~~l~~--lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l---- 80 (411)
.+|+.|++++|.++. ...+.. ..+|++|++++|.++. +......+++|++|++++| .+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 355566666655544 222221 1455566665555541 1111223445555555553 3333221111
Q ss_pred -cCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc-----CCcccccCCCCcEEEEEecC
Q 038576 81 -SSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 81 -~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~i~~~~ 154 (411)
...++|++|++++|.+.... .......+...++|++|++++|.+.. ++..+...++|+.|+++.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~--------~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAG--------VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHH--------HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHH--------HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 23455555555555543200 00122333445555555555554321 12233444555555555443
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=4.8e-06 Score=78.60 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=74.8
Q ss_pred cccCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCC
Q 038576 234 ESSNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEG 313 (411)
Q Consensus 234 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 313 (411)
....++.++.+...... .. ......+.+|+.+.+... ++.++. ....++.+|+.+++.+ .++.+...
T Consensus 271 ~F~~~~~l~~~~~~~~~-i~--~~~F~~~~~L~~i~l~~~--i~~I~~-~aF~~c~~L~~i~lp~--~v~~I~~~----- 337 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI-VP--EKTFYGCSSLTEVKLLDS--VKFIGE-EAFESCTSLVSIDLPY--LVEEIGKR----- 337 (394)
T ss_dssp TTTTCTTCCEEEECSSE-EC--TTTTTTCTTCCEEEECTT--CCEECT-TTTTTCTTCCEECCCT--TCCEECTT-----
T ss_pred ccccccccceeccCcee-ec--cccccccccccccccccc--cceech-hhhcCCCCCCEEEeCC--cccEEhHH-----
Confidence 34566777777665321 11 112223778888888643 666643 3456788899888853 25555332
Q ss_pred CCccCccccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCCCCCCCceEE
Q 038576 314 DNYAAQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGELSTPKLQKV 382 (411)
Q Consensus 314 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l 382 (411)
.+..+.+|+.+.+.. +++.+ ...+. .+|++|+++.+.. .++.+.......++|+.+
T Consensus 338 ------aF~~c~~L~~i~lp~--~l~~I--~~~aF-~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 338 ------SFRGCTSLSNINFPL--SLRKI--GANAF-QGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp ------TTTTCTTCCEECCCT--TCCEE--CTTTB-TTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred ------hccCCCCCCEEEECc--cccEe--hHHHh-hCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 344678888888864 47777 22222 5688899988854 355555455567777765
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=6e-09 Score=97.63 Aligned_cols=132 Identities=14% Similarity=0.175 Sum_probs=96.8
Q ss_pred ccCcEEEecCCcCCC--Cccc-cccccCcEEEeeCCccccc-----hHHh-cCCCCCCEEecCCCCCcccc-----Cccc
Q 038576 14 QNLQTLSLDDCELGD--MAII-GDLKKLVILALRGSDMEEL-----AGEI-GQLTQLRLLNLSKCFELKVI-----PPNV 79 (411)
Q Consensus 14 ~~L~~L~l~~~~l~~--~~~l-~~l~~L~~L~L~~~~l~~l-----p~~i-~~l~~L~~L~L~~c~~~~~~-----~~~~ 79 (411)
.+|++|++++|.+++ ...+ ..+.+|++|++++|.++.. ...+ ...++|++|++++| .+++. +..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~- 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG- 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH-
Confidence 699999999999877 3333 3568999999999998732 2233 35789999999995 56553 322
Q ss_pred ccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCc-----CCcccccCCCCcEEEEEecC
Q 038576 80 ISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKT-----LPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 80 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~i~~~~ 154 (411)
+...++|++|++++|.+....+ ......+...++|++|++++|.+.. ++..+...++|++|+++.+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~--------~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGL--------ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHH--------HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HhcCCCcCEEeCCCCCCCcHHH--------HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5789999999999998754011 1234667778899999999998653 33445567899999987655
Q ss_pred C
Q 038576 155 S 155 (411)
Q Consensus 155 ~ 155 (411)
.
T Consensus 251 i 251 (372)
T 3un9_A 251 L 251 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=3.1e-07 Score=77.00 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=66.6
Q ss_pred hhccccCcEEEecCC-cCCC--C----ccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCcccc--
Q 038576 10 LGLLQNLQTLSLDDC-ELGD--M----AIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVI-- 75 (411)
Q Consensus 10 l~~l~~L~~L~l~~~-~l~~--~----~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~-- 75 (411)
+.....|++|++++| .+.+ . ..+...++|++|+|++|.+. .+...+...++|++|++++ +.+.+-
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHH
Confidence 455677777777777 6655 1 33445677777777777765 2344555667777777777 345442
Q ss_pred ---CcccccCCCCccEEEe--cccccccCccccccccccccchhhccCCCCCCEEEEeecc
Q 038576 76 ---PPNVISSLSRLEELYI--GQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQD 131 (411)
Q Consensus 76 ---~~~~l~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 131 (411)
... +...++|++|++ ++|.+... +.......+...++|++|++++|.
T Consensus 111 ~~l~~~-L~~n~~L~~L~L~~~~N~i~~~--------g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 111 LALVEA-LQSNTSLIELRIDNQSQPLGNN--------VEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHG-GGGCSSCCEEECCCCSSCCCHH--------HHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHH-HHhCCCceEEEecCCCCCCCHH--------HHHHHHHHHHhCCCcCEEeccCCC
Confidence 222 556667777777 66665430 001223444455667777776664
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.27 E-value=8.5e-05 Score=69.96 Aligned_cols=126 Identities=9% Similarity=0.077 Sum_probs=86.1
Q ss_pred hhhccc-cCcEEEecCCcCCC--CccccccccCcEEEeeCC---ccccchH-HhcCCCCCCEEecCCCCCccccCccccc
Q 038576 9 SLGLLQ-NLQTLSLDDCELGD--MAIIGDLKKLVILALRGS---DMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVIS 81 (411)
Q Consensus 9 ~l~~l~-~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~---~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~ 81 (411)
.|.++. .|+.+.+... ++. ...|.++.+|+.+.+..+ .++.+.. .+..+.+|+.+.+.. .++.++..++.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhhh
Confidence 477774 5999999753 555 577889999999999875 3666654 477888999888765 47778777788
Q ss_pred CCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEE
Q 038576 82 SLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRIL 151 (411)
Q Consensus 82 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~ 151 (411)
.+.+|+.+.+...... + ....+..+.+|+.+.+..+ ...+........+|+.+.+-
T Consensus 135 ~c~~L~~i~lp~~~~~---I----------~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip 190 (394)
T 4gt6_A 135 HCEELDTVTIPEGVTS---V----------ADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIP 190 (394)
T ss_dssp TCTTCCEEECCTTCCE---E----------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEEC
T ss_pred hhcccccccccceeee---e----------cccceecccccccccccce-eeEeccccccccceeEEEEC
Confidence 9999999998654321 1 2256677778888877543 22233322234567777663
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.24 E-value=0.00013 Score=68.58 Aligned_cols=107 Identities=13% Similarity=0.141 Sum_probs=65.7
Q ss_pred cccccc-ccCcEEEeeCCccccch-HHhcCCCCCCEEecCCC--CCccccCcccccCCCCccEEEecccccccCcccccc
Q 038576 30 AIIGDL-KKLVILALRGSDMEELA-GEIGQLTQLRLLNLSKC--FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVD 105 (411)
Q Consensus 30 ~~l~~l-~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~c--~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 105 (411)
..|.++ ..|+.+.+-.+ ++.+. .++.++.+|+.+.+..+ ..++.++..++..+.+|+.+.+..+-. .
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~---~----- 127 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVT---E----- 127 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCS---E-----
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccc---e-----
Confidence 445555 35788877654 55554 34778888888887652 346777776678888888776654321 1
Q ss_pred ccccccchhhccCCCCCCEEEEeeccCCcCC-cccccCCCCcEEEEE
Q 038576 106 GERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRIL 151 (411)
Q Consensus 106 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~i~ 151 (411)
-....+..+.+|+.+.+.... ..+. ..+..+.+|+.+.+.
T Consensus 128 -----I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 128 -----IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp -----ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECC
T ss_pred -----ehhhhhhhhccccccccccee-eeecccceeccccccccccc
Confidence 122556777788888875432 2222 234566777777653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=1.1e-06 Score=81.59 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=90.9
Q ss_pred CChhhhccccCcEEEecCCcCC----------C-CccccccccCcEEEeeCCccccchHHhcCCCCCCEEecCCCCCccc
Q 038576 6 LPSSLGLLQNLQTLSLDDCELG----------D-MAIIGDLKKLVILALRGSDMEELAGEIGQLTQLRLLNLSKCFELKV 74 (411)
Q Consensus 6 lp~~l~~l~~L~~L~l~~~~l~----------~-~~~l~~l~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~c~~~~~ 74 (411)
+++++.++.+|+.|.+.+.... + ...+..+++|+.|+++++.-..++. + .+++|++|++..|. +..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~ 207 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPD 207 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCH
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CCh
Confidence 4456778889999988765322 1 1334567899999998873223443 3 37889999998753 332
Q ss_pred cCcccc--cCCCCccEEEecccc--cccCccccccccccccchhhc--cCCCCCCEEEEeeccCCc-CCccc---ccCCC
Q 038576 75 IPPNVI--SSLSRLEELYIGQSP--IQWGKVEGVDGERRNASLDEL--NNLSKLTSLEILIQDEKT-LPRDL---SFFKM 144 (411)
Q Consensus 75 ~~~~~l--~~L~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~-~~~~l---~~~~~ 144 (411)
-....+ ..+++|++|+++.+. ... .. ........+ ..+++|++|++.+|.... .+..+ ..+++
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~-~~------~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~ 280 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGF-DG------DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQ 280 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTC-CS------CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGG
T ss_pred HHHHHHHHccCCCCcEEEEecccccccc-ch------hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCC
Confidence 221113 378899999886421 110 00 000111112 357889999998876432 11112 24788
Q ss_pred CcEEEEEecCCcc-----ccCc-CCccceeEEEecCC
Q 038576 145 LQRYRILIGDSRE-----YDAW-DGISRISKLKLTNG 175 (411)
Q Consensus 145 L~~L~i~~~~~~~-----~~~~-~~~~~l~~L~~~~~ 175 (411)
|++|+++.+.... +... ....+++.|++..+
T Consensus 281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 9999987554332 1111 12467778877554
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.06 E-value=1.8e-06 Score=80.28 Aligned_cols=139 Identities=17% Similarity=0.090 Sum_probs=81.9
Q ss_pred cCCCCCcEEEecCCcCCccCCCCCCCCCCcCeEeecCCCCCccccchHh-hhccccccEEeEcccccccccccccCCCCC
Q 038576 236 SNAKDLEKLSIFMCDNLTHLVPSSTSFQNLTTLTVWGCHGMINVLTSST-ARSLVRLRQMTIKVCVMITEIVADEDDEGD 314 (411)
Q Consensus 236 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 314 (411)
..+|+|++|.++++..+. +.+ .. .++|+.|++..|.. ..-..... ...+|+|+.|+|..+.+... . ..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~~~~~~~~--~---~~~~ 239 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYG--F---DGDM 239 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEECBCGGGT--C---CSCG
T ss_pred hcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEeccccccc--c---chhH
Confidence 578999999998864332 223 23 89999999987753 32211111 23789999999964321100 0 0000
Q ss_pred CccCc--cccccCCCCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCcc-----ccCCCCCCCCceEEEEe
Q 038576 315 NYAAQ--DEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKI-----FSEGELSTPKLQKVQMS 385 (411)
Q Consensus 315 ~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~-----~p~~~~~~~~L~~l~l~ 385 (411)
..+.. ....||+|+.|.+.+|..-...+. ....+..+|+|++|+++. +.+.. ++.++..+++|+.|++.
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~-~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE-MFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHH-HHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHH-HHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECC
Confidence 00000 113589999999998753221100 000002359999999976 45664 44444467999999996
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.92 E-value=3.1e-06 Score=70.80 Aligned_cols=116 Identities=14% Similarity=0.089 Sum_probs=82.6
Q ss_pred ccccccccCcEEEeeCC-ccc-----cchHHhcCCCCCCEEecCCCCCccccCc----ccccCCCCccEEEecccccccC
Q 038576 30 AIIGDLKKLVILALRGS-DME-----ELAGEIGQLTQLRLLNLSKCFELKVIPP----NVISSLSRLEELYIGQSPIQWG 99 (411)
Q Consensus 30 ~~l~~l~~L~~L~L~~~-~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~~~----~~l~~L~~L~~L~l~~~~~~~~ 99 (411)
..+...+.|++|++++| .+. .+...+...++|++|+|++| .+.+-.. ..+...++|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34567789999999999 886 35566788899999999995 5654221 1255678999999999987541
Q ss_pred ccccccccccccchhhccCCCCCCEEEE--eeccCCc-----CCcccccCCCCcEEEEEecC
Q 038576 100 KVEGVDGERRNASLDELNNLSKLTSLEI--LIQDEKT-----LPRDLSFFKMLQRYRILIGD 154 (411)
Q Consensus 100 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l--~~~~~~~-----~~~~l~~~~~L~~L~i~~~~ 154 (411)
. .......+...+.|++|++ ++|.+.. +...+...++|++|++..+.
T Consensus 109 g--------~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 G--------ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp H--------HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred H--------HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 1 1134566777889999999 7776443 33445567889999886443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.1e-05 Score=71.31 Aligned_cols=86 Identities=22% Similarity=0.310 Sum_probs=58.4
Q ss_pred cccccCcEEEeeCCccccc---hHHhcCCCCCCEEecCCCCCccccCcccccCCC--CccEEEecccccccCcccccccc
Q 038576 33 GDLKKLVILALRGSDMEEL---AGEIGQLTQLRLLNLSKCFELKVIPPNVISSLS--RLEELYIGQSPIQWGKVEGVDGE 107 (411)
Q Consensus 33 ~~l~~L~~L~L~~~~l~~l---p~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~--~L~~L~l~~~~~~~~~~~~~~~~ 107 (411)
.++++|++|+|++|.++.+ |..++.+++|++|+|++ +.+..+.. +..+. +|++|++++|++.. .++..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~-~~~~~--- 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE--LDKIKGLKLEELWLDGNSLCD-TFRDQ--- 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG--GGGGTTSCCSEEECTTSTTGG-GCSSH---
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh--hhhcccCCcceEEccCCcCcc-ccCcc---
Confidence 4678899999999988754 45667889999999998 67776632 44444 89999999988754 22200
Q ss_pred ccccchhhccCCCCCCEEE
Q 038576 108 RRNASLDELNNLSKLTSLE 126 (411)
Q Consensus 108 ~~~~~~~~l~~l~~L~~L~ 126 (411)
..-....+..+++|+.|+
T Consensus 240 -~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 240 -STYISAIRERFPKLLRLD 257 (267)
T ss_dssp -HHHHHHHHHHCTTCCEES
T ss_pred -hhHHHHHHHHCcccCeEC
Confidence 001124567777887776
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.77 E-value=0.0035 Score=58.39 Aligned_cols=79 Identities=6% Similarity=0.127 Sum_probs=54.5
Q ss_pred hhccccCcEEEecCCcCCC--CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCc
Q 038576 10 LGLLQNLQTLSLDDCELGD--MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRL 86 (411)
Q Consensus 10 l~~l~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L 86 (411)
+....+|+.+.+.. .++. ...|.++.+|+.+++..+ ++.+.. .+.++ +|+.+.+-. .++.++..++.. .+|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG-TDL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT-CCC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceecc-CCc
Confidence 45567888888864 3444 466888999999999654 666654 35566 577777654 477777765655 479
Q ss_pred cEEEeccc
Q 038576 87 EELYIGQS 94 (411)
Q Consensus 87 ~~L~l~~~ 94 (411)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 99888654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.74 E-value=1.8e-05 Score=69.84 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=74.2
Q ss_pred ccccccccCcE--EEeeCCccccchH----HhcCCCCCCEEecCCCCCccccCc--ccccCCCCccEEEecccccccCcc
Q 038576 30 AIIGDLKKLVI--LALRGSDMEELAG----EIGQLTQLRLLNLSKCFELKVIPP--NVISSLSRLEELYIGQSPIQWGKV 101 (411)
Q Consensus 30 ~~l~~l~~L~~--L~L~~~~l~~lp~----~i~~l~~L~~L~L~~c~~~~~~~~--~~l~~L~~L~~L~l~~~~~~~~~~ 101 (411)
+.+...+.|+. ++++.|....++. ...++++|+.|+|++ +.+..++. ..++.+++|+.|++++|.+.. +
T Consensus 135 s~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~ 211 (267)
T 3rw6_A 135 KGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E 211 (267)
T ss_dssp TTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G
T ss_pred HHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCC--c
Confidence 34556666766 6677775554433 225799999999999 67776542 235689999999999998864 1
Q ss_pred ccccccccccchhhccCCCCCCEEEEeeccCCc-CC-------cccccCCCCcEEE
Q 038576 102 EGVDGERRNASLDELNNLSKLTSLEILIQDEKT-LP-------RDLSFFKMLQRYR 149 (411)
Q Consensus 102 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~-------~~l~~~~~L~~L~ 149 (411)
.....+..+ +|++|++.+|.... +| ..+..+++|+.|+
T Consensus 212 ---------~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 212 ---------RELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ---------GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ---------hhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 122334444 89999999998543 33 2356789999885
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.51 E-value=0.0089 Score=55.58 Aligned_cols=309 Identities=10% Similarity=0.110 Sum_probs=158.6
Q ss_pred EEEecCCc-CCC------CccccccccCcEEEeeCCccccchH-HhcCCCCCCEEecCCCCCccccCcccccCCCCccEE
Q 038576 18 TLSLDDCE-LGD------MAIIGDLKKLVILALRGSDMEELAG-EIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEEL 89 (411)
Q Consensus 18 ~L~l~~~~-l~~------~~~l~~l~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L 89 (411)
+|.++|.+ +.+ .+++....+|+.+.+.. .++.++. ++.+|.+|+.+.+.. .++.++..++..+ +|+.+
T Consensus 21 ~l~i~g~g~~~~~~~~~~~~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i 96 (379)
T 4h09_A 21 VLTISGTGAMPDYTKIANIPWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSY 96 (379)
T ss_dssp EEEEEESEECCCCSSGGGSTTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEE
T ss_pred eEEEEeeeecccccccccccccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceE
Confidence 45666653 322 45677778999999975 4666654 488999999999975 4888888878887 68888
Q ss_pred EecccccccCccccccccccccchhhccCCCCCCEEEEeeccCCcCCcccccCCCCcEEEEEecCCccccC--cCCccce
Q 038576 90 YIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRILIGDSREYDA--WDGISRI 167 (411)
Q Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~i~~~~~~~~~~--~~~~~~l 167 (411)
.+..+-. .+. ...+.. .+|+.+.+.... ..+........++....+. ........ +.....+
T Consensus 97 ~~~~~l~---~I~----------~~aF~~-~~L~~i~lp~~~-~~i~~~~F~~~~l~~~~~~-~~v~~i~~~~f~~~~~l 160 (379)
T 4h09_A 97 TGMERVK---KFG----------DYVFQG-TDLDDFEFPGAT-TEIGNYIFYNSSVKRIVIP-KSVTTIKDGIGYKAENL 160 (379)
T ss_dssp EECTTCC---EEC----------TTTTTT-CCCSEEECCTTC-CEECTTTTTTCCCCEEEEC-TTCCEECSCTTTTCTTC
T ss_pred ECCceee---Eec----------cceecc-CCcccccCCCcc-ccccccccccceeeeeecc-ceeeccccchhcccccc
Confidence 7754421 111 123333 368888775432 1222221222345555442 11111111 1112233
Q ss_pred eEEEecCCcccccccccccccccchhcccCCCccccccccchhhhchHhhhccccccccccccccccccCCCCCcEEEec
Q 038576 168 SKLKLTNGANICLNEGHIMQLKRIEDLTSGGDSEALYTSFKNVENGMEAMMRGINHRRELKQIFKQESSNAKDLEKLSIF 247 (411)
Q Consensus 168 ~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~~~~~~~l~~~~~l~~~~~~~~~~~~~L~~L~l~ 247 (411)
................... ....... ......+..+..+ .+.. ....+.......+.+|+.+.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~~~------~~~~--~~~~i~~~~f~~~~~l~~i~~~ 225 (379)
T 4h09_A 161 EKIEVSSNNKNYVAENYVL-YNKNKTI------LESYPAAKTGTEF------TIPS--TVKTVTAYGFSYGKNLKKITIT 225 (379)
T ss_dssp CEEEECTTCSSEEEETTEE-EETTSSE------EEECCTTCCCSEE------ECCT--TCCEECTTTTTTCSSCSEEECC
T ss_pred cccccccccceeeccccee-cccccce------ecccccccccccc------cccc--ceeEEeecccccccccceeeec
Confidence 3332211111000000000 0000000 0001111222222 2211 1222222233456777777775
Q ss_pred CCcCCccCC-CCCCCCCCcCeEeecCCCCCccccchHhhhccccccEEeEcccccccccccccCCCCCCccCccccccCC
Q 038576 248 MCDNLTHLV-PSSTSFQNLTTLTVWGCHGMINVLTSSTARSLVRLRQMTIKVCVMITEIVADEDDEGDNYAAQDEIVFSE 326 (411)
Q Consensus 248 ~c~~l~~~~-~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 326 (411)
. .+.... .....+.+|+.+.+... ++.+.. .....+.+|+.+.+.. .++.+... .+..+++
T Consensus 226 ~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~--~i~~i~~~-----------aF~~c~~ 287 (379)
T 4h09_A 226 S--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYA--KVKTVPYL-----------LCSGCSN 287 (379)
T ss_dssp T--TCCEECTTTTTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECC--CCSEECTT-----------TTTTCTT
T ss_pred c--ceeEEccccccCCccceEEEcCCC--ccEeCc-cccceeehhccccccc--cceecccc-----------ccccccc
Confidence 3 221111 12223778888888543 555533 3456778888888854 24444322 3446788
Q ss_pred CCeeecCCCcCCceeccCCCcccccCCCcceEeecCCCCCccccCCC-CCCCCceEEEEe
Q 038576 327 LKELNLSNLQSLTSFSCSGNNCAFKFPSLERLVVNRCPNMKIFSEGE-LSTPKLQKVQMS 385 (411)
Q Consensus 327 L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~l~ 385 (411)
|+.+.+.+. .++.+ ...+. .+|.+|+.+.+.. .++.+.... ..+.+|+++.+.
T Consensus 288 L~~i~l~~~-~i~~I--~~~aF-~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDNS-AIETL--EPRVF-MDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCT-TCCEE--CTTTT-TTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccc-cccee--hhhhh-cCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 999988753 46777 22222 5688999998854 577776543 366788888774
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.0048 Score=47.84 Aligned_cols=54 Identities=19% Similarity=0.348 Sum_probs=36.1
Q ss_pred EEEeeCCccc--cchHHhcCCCCCCEEecCCCCCccccCcccccCCCCccEEEeccccc
Q 038576 40 ILALRGSDME--ELAGEIGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIGQSPI 96 (411)
Q Consensus 40 ~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~~~~~ 96 (411)
+++.++..++ .+|..+. ++|++|+|++ +.++.++.+++..+++|++|++++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5566666665 6664332 3577777777 677777776677777777777777764
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.96 E-value=0.02 Score=47.70 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=6.5
Q ss_pred CCccEEEeccccc
Q 038576 84 SRLEELYIGQSPI 96 (411)
Q Consensus 84 ~~L~~L~l~~~~~ 96 (411)
+.|++|++++|.+
T Consensus 98 ~tL~~L~L~~N~I 110 (197)
T 1pgv_A 98 PSLRVLNVESNFL 110 (197)
T ss_dssp SSCCEEECCSSBC
T ss_pred CccCeEecCCCcC
Confidence 4455555555544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.90 E-value=0.027 Score=43.58 Aligned_cols=51 Identities=18% Similarity=0.196 Sum_probs=37.4
Q ss_pred cEEEecCCcCC--C-CccccccccCcEEEeeCCccccchHH-hcCCCCCCEEecCCC
Q 038576 17 QTLSLDDCELG--D-MAIIGDLKKLVILALRGSDMEELAGE-IGQLTQLRLLNLSKC 69 (411)
Q Consensus 17 ~~L~l~~~~l~--~-~~~l~~l~~L~~L~L~~~~l~~lp~~-i~~l~~L~~L~L~~c 69 (411)
.+++-++.+++ . |..+. .+|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 36777777776 5 54432 4688888888888888764 567888888888884
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.31 E-value=0.017 Score=48.03 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=55.8
Q ss_pred ccccCcEEEecCC-cCCC------CccccccccCcEEEeeCCccc-----cchHHhcCCCCCCEEecCCCCCccccCcc-
Q 038576 12 LLQNLQTLSLDDC-ELGD------MAIIGDLKKLVILALRGSDME-----ELAGEIGQLTQLRLLNLSKCFELKVIPPN- 78 (411)
Q Consensus 12 ~l~~L~~L~l~~~-~l~~------~~~l~~l~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~c~~~~~~~~~- 78 (411)
+-..|+.|+|+++ .+.+ -..+..-..|+.|+|++|.+. .+...+..-+.|++|+|+. +.+.+-...
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHHH
Confidence 3467888999885 6665 244556678999999988876 3555666678899999988 566543221
Q ss_pred ---cccCCCCccEEEeccc
Q 038576 79 ---VISSLSRLEELYIGQS 94 (411)
Q Consensus 79 ---~l~~L~~L~~L~l~~~ 94 (411)
++..=+.|++|+++++
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 1344456888888754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.47 E-value=19 Score=25.76 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=16.5
Q ss_pred hcCCCCCCEEecCCCCCccccCcccccCCCCccEEEec
Q 038576 55 IGQLTQLRLLNLSKCFELKVIPPNVISSLSRLEELYIG 92 (411)
Q Consensus 55 i~~l~~L~~L~L~~c~~~~~~~~~~l~~L~~L~~L~l~ 92 (411)
|.+|.+|+.+.+-. .++.+...++..+.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEc
Confidence 44444444444443 2444444444455555555443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=34.83 E-value=49 Score=23.50 Aligned_cols=48 Identities=6% Similarity=-0.032 Sum_probs=33.5
Q ss_pred CCccccCcccccCCCCccEEEecccccccCccccccccccccchhhccCCCCCCEEEEeec
Q 038576 70 FELKVIPPNVISSLSRLEELYIGQSPIQWGKVEGVDGERRNASLDELNNLSKLTSLEILIQ 130 (411)
Q Consensus 70 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 130 (411)
..++.+...++..+++|+.+.+..+-.. -....|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v~~-------------Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNIGL-------------LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTSSC-------------CCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCchhe-------------EcHHHHhccCCccEEEEcCC
Confidence 4567777777889999999988765321 12266777788888877653
Done!