BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038577
(860 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 157/592 (26%), Positives = 266/592 (44%), Gaps = 93/592 (15%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
SS++ +A SPDG + + +++ N + ++ V + FSP+G+ IA
Sbjct: 16 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 75
Query: 112 TG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
+ K V++W G +L++TL + V + +SPD + S D V+L+
Sbjct: 76 SDDKTVKLWNRNG--------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127
Query: 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKI 230
+L + T L GH SV G FS D +T I + + D + W +G++
Sbjct: 128 NGQL--LQT-----LTGHSSSVWGVAFSPDGQT-----IASASDDKTVKLWN---RNGQL 172
Query: 231 DETMEDSEPPSPGTPERRVKKWGLLRKDD---FSQAPSKVTACDYHRG--LDMVVVGFSN 285
+T+ WG+ D + A T ++R L + G S+
Sbjct: 173 LQTLTGHSS----------SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345
V G+ PD I S S +K T ++N G +L Q L
Sbjct: 223 SVRGVAFSPDGQTI--ASASDDK-TVKLWNRNG--------QLLQTLT------------ 259
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
GH VN +A+ PD Q +A+ +DD VK+W +G T T H+++V + F + +
Sbjct: 260 -GHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 317
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF-VSLASDQSGEVICAGTLDSFEIFVWSM 464
+ SAS D TV+ W+ ++ +T T SS + V+ + D G+ I + + D + +W+
Sbjct: 318 IASASDDKTVKLWNR-NGQHLQTLTGHSSSVWGVAFSPD--GQTIASAS-DDKTVKLWN- 372
Query: 465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLT 524
+ G+LL L+GH V G+ FSP T+AS+S DKTV+LWN G+ H+ V
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 431
Query: 525 VVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSS---- 579
V + PD + +A ++ D + W+ NG+L+ T+ G + G D ++ A++S
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 580 ------SGKCFTTL----------CYSADGSYILAGGSSKYICMYDVADQVL 615
+G+ TL +S DG I + K + +++ Q+L
Sbjct: 491 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 542
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 143/529 (27%), Positives = 242/529 (45%), Gaps = 82/529 (15%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
SS++ +A SPDG + + +++ N + ++ V + FSP+G+ IA
Sbjct: 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 157
Query: 112 TG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
+ K V++W G +L++TL + V + +SPD + S D V+L+
Sbjct: 158 SDDKTVKLWNRNG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 209
Query: 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKT------DKVNRIYTIARDCYMFSWGFS 224
+L + T L GH SV G FS D +T DK +++ R+ + +
Sbjct: 210 NGQL--LQT-----LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN--RNGQLLQ-TLT 259
Query: 225 GNDGKIDETM--EDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVG 282
G+ ++ D + + + ++ VK W + + L + G
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLW------------------NRNGQLLQTLTG 301
Query: 283 FSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWL---------VFGCA--KLGQL 331
S+ V+G+ PD I S S +K T ++N G L V+G A GQ
Sbjct: 302 HSSSVWGVAFSPDGQTI--ASASDDK-TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQT 358
Query: 332 L--------VWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF 382
+ V W +L+ GH V +A+SPD Q +A+ +DD VK+W +G
Sbjct: 359 IASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 417
Query: 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT----PSSRQFV 438
T T H+++V + F ++ ++ SAS D TV+ W+ RN + T SS + V
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGV 473
Query: 439 SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD 498
+ + D G+ I + + D + +W+ + G+LL L+GH V G+ FSP T+AS+S D
Sbjct: 474 AFSPD--GQTIASAS-DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 529
Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
KTV+LWN G+ H+ V V + PDG+ +A ++ D + W+
Sbjct: 530 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 181/378 (47%), Gaps = 62/378 (16%)
Query: 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337
+ G S+ V+G+ PD I S S +K T ++N G +L Q L
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTI--ASASDDK-TVKLWNRNG--------QLLQTLT---- 95
Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL 397
GH V +A+SPD Q +A+ +DD VK+W +G T T H+++V +
Sbjct: 96 ---------GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV 145
Query: 398 HFMANNHSLLSASLDGTVRAWDLFRYRN---FRTFTTPSSRQF-VSLASDQSGEVICAGT 453
F + ++ SAS D TV+ W+ RN +T T SS + V+ + D G+ I + +
Sbjct: 146 AFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVWGVAFSPD--GQTIASAS 199
Query: 454 LDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV 513
D + +W+ + G+LL L+GH V G+ FSP T+AS+S DKTV+LWN G+
Sbjct: 200 -DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 256
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDR 572
H+ V V +RPDG+ +A ++ D + W+ NG+L+ T+ G + G D
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 573 RSAANSS----------SGKCFTTL----------CYSADGSYILAGGSSKYICMYDVAD 612
++ A++S +G+ TL +S DG I + K + +++
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG 375
Query: 613 QVLLRRFQITHNLSLDGV 630
Q+L + H+ S+ GV
Sbjct: 376 QLL--QTLTGHSSSVRGV 391
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 148/289 (51%), Gaps = 37/289 (12%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+ H V +A+SPD Q +A+ +DD VK+W +G T T H+++V + F + +
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTT----PSSRQFVSLASDQSGEVICAGTLDSFEIFV 461
+ SAS D TV+ W+ RN + T SS + V+ + D G+ I + + D + +
Sbjct: 72 IASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPD--GQTIASAS-DDKTVKL 124
Query: 462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD 521
W+ + G+LL L+GH V G+ FSP T+AS+S DKTV+LWN G+ H+
Sbjct: 125 WN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSS 182
Query: 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581
V V + PDG+ +A ++ D + W+ NG+L+ T+ G +SSS
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTG-----------------HSSSV 224
Query: 582 KCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGV 630
+ + +S DG I + K + +++ Q+L + H+ S++GV
Sbjct: 225 RG---VAFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHSSSVNGV 268
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 23/164 (14%)
Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
L H V G+ FSP T+AS+S DKTV+LWN G+ H+ V V + PDG+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 533 QLACSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSS----------SG 581
+A ++ D + W+ NG+L+ T+ G + G D ++ A++S +G
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 129
Query: 582 KCFTTL----------CYSADGSYILAGGSSKYICMYDVADQVL 615
+ TL +S DG I + K + +++ Q+L
Sbjct: 130 QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 173
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 35 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 92
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 153 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 209
Query: 472 ILSGHEGPVHGLV-FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + P V FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 210 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 269
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 270 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 305
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 113 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 172
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 173 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 232
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 233 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 290
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 291 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 89
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 90 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 131
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 132 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 176
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 177 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 235 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 266
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 267 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 313
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 314 TENIIASAALENDKTIKLW 332
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 102
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 103 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 151
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 152 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 183
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 241
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 242 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 302 HTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 14/124 (11%)
Query: 95 PVNAILFSPNGKYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLADC-NDKVTALNWSPD 152
PV+A+ F+ +G I + L +IW + + + ++TL D N V+ + +SP+
Sbjct: 175 PVSAVHFNRDGSLIVSSSYDGLCRIW-------DTASGQCLKTLIDDDNPPVSFVKFSPN 227
Query: 153 SNYLLVGSKDLAVRLF-YVKEK-LKGI--HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR 208
Y+L + D ++L+ Y K K LK H N+ + + + SV G + V D +
Sbjct: 228 GKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF-SVTGGKWIVSGSEDNLVY 286
Query: 209 IYTI 212
I+ +
Sbjct: 287 IWNL 290
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 90
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 151 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 207
Query: 472 ILSGHEGPVHGLV-FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + P V FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 267
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 268 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 303
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 111 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 170
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 231 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 288
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 289 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 87
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 88 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 129
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 130 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 174
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 175 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 233 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 264
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 265 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 312 TENIIASAALENDKTIKLW 330
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 100
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 101 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 149
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 150 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 181
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 239
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 240 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 300 HTDVVISTACHPTENIIASAALENDKTIKLW 330
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ + L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 71
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 188
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 212 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL- 269
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 270 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L+ TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 68
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 69 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 110
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + +C+ L + +
Sbjct: 111 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 245
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ + VS + D +++W+++T ++ L GH V P
Sbjct: 246 NFSVTGGKWIVSGSEDN-------------MVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 293 TENIIASAALENDKTIKLW 311
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 138/334 (41%), Gaps = 62/334 (18%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 81
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I +
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVS--- 127
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK---VTACD 271
G DE+ V+ W + P+ V+A
Sbjct: 128 -------------GSFDES---------------VRIWDVKTGMCLKTLPAHSDPVSAVH 159
Query: 272 YHRGLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQ 330
++R ++V +G+ ++ C+ L+ ++ F+ G +++ A L
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDN 217
Query: 331 LL-VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVT 386
L +W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 387 FTEHTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 278 LQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 11/279 (3%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHY 349
+ P++ L+ + +++ F+ G WL A KL + +W + GH
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHK 68
Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
++ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR 468
S D +VR WD+ + +T P+ VS ++ G +I + + D +W +G+
Sbjct: 129 SFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ 185
Query: 469 LLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
L L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 528 R---PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 6/214 (2%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 212 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 269
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLD 540
+ K V+ HT V++ P +A + L+
Sbjct: 270 QTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/393 (19%), Positives = 151/393 (38%), Gaps = 90/393 (22%)
Query: 117 QIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKG 176
Q+ R F K +A + TLA V+++ +SP+ +L S D ++++ G
Sbjct: 4 QMGRGSEFVKPNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------G 54
Query: 177 IHTNK-PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME 235
+ K + GH+ + +S D N + + + D + W S GK +T++
Sbjct: 55 AYDGKFEKTISGHKLGISDVAWSSDS-----NLLVSASDDKTLKIWDVS--SGKCLKTLK 107
Query: 236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD 295
+ V C+++ +++V G + ++ +
Sbjct: 108 GHS--------------------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVN 353
C+ L + ++ FN G+ L+ + G +W+ + LK V+
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVS 199
Query: 354 CLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413
+ +SP+ + + DN +K+W S G C T+T H N
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE-------------------- 239
Query: 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL 473
+Y F F+ G+ I +G+ D+ +++W+++T ++ L
Sbjct: 240 --------KYCIFANFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKL 278
Query: 474 SGHEGPVHGLVFSPTNATLASSSW--DKTVRLW 504
GH V PT +AS++ DKT++L+
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/323 (20%), Positives = 134/323 (41%), Gaps = 54/323 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 81
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 130
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 131 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 162
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 220
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 390 HTNAVTALHFMANNHSLLSASLD 412
HT+ V + + + SA+L+
Sbjct: 281 HTDVVISTACHPTENIIASAALE 303
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 11/279 (3%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHY 349
+ P++ L+ + +++ F+ G WL A KL + +W + GH
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHK 68
Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
++ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR 468
S D +VR WD+ + +T P+ VS ++ G +I + + D +W +G+
Sbjct: 129 SFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ 185
Query: 469 LLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
L L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 528 R---PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 6/214 (2%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 212 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 269
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLD 540
+ K V+ HT V++ P +A + L+
Sbjct: 270 QTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 76/392 (19%), Positives = 150/392 (38%), Gaps = 90/392 (22%)
Query: 117 QIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKG 176
Q+ R F K +A + TLA V+++ +SP+ +L S D ++++ G
Sbjct: 4 QMGRGSEFVKPNYALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------G 54
Query: 177 IHTNK-PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME 235
+ K + GH+ + +S D N + + + D + W S GK +T++
Sbjct: 55 AYDGKFEKTISGHKLGISDVAWSSDS-----NLLVSASDDKTLKIWDVS--SGKCLKTLK 107
Query: 236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD 295
+ V C+++ +++V G + ++ +
Sbjct: 108 GHS--------------------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVN 353
C+ L + ++ FN G+ L+ + G +W+ + LK V+
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVS 199
Query: 354 CLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413
+ +SP+ + + DN +K+W S G C T+T H N
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE-------------------- 239
Query: 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL 473
+Y F F+ G+ I +G+ D+ +++W+++T ++ L
Sbjct: 240 --------KYCIFANFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKL 278
Query: 474 SGHEGPVHGLVFSPTNATLASSSW--DKTVRL 503
GH V PT +AS++ DKT++L
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKL 310
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/323 (20%), Positives = 134/323 (41%), Gaps = 54/323 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 81
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 130
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 131 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 162
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 220
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 390 HTNAVTALHFMANNHSLLSASLD 412
HT+ V + + + SA+L+
Sbjct: 281 HTDVVISTACHPTENIIASAALE 303
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 74
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 191
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 215 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 272
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 273 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 71
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 72 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 113
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 114 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 159 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 217 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 248
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 249 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 296 TENIIASAALENDKTIKLW 314
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 84
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 85 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 133
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 134 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 165
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 223
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 131/279 (46%), Gaps = 11/279 (3%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHY 349
+ P++ L+ + +++ F+ G WL A KL + +W + GH
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKL--IKIWGAYDGKFEKTISGHK 68
Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
++ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S
Sbjct: 69 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 128
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR 468
S D +VR WD+ + +T P+ VS ++ G +I + + D +W +G+
Sbjct: 129 SFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQ 185
Query: 469 LLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY 527
L L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 528 R---PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 246 NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 151
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 212 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 269
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 270 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/393 (19%), Positives = 151/393 (38%), Gaps = 90/393 (22%)
Query: 117 QIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKG 176
Q+ R F K +A + TLA V+++ +SP+ +L S D ++++ G
Sbjct: 4 QMGRGSEFVKPNYALKF--TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIW-------G 54
Query: 177 IHTNK-PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETME 235
+ K + GH+ + +S D N + + + D + W S GK +T++
Sbjct: 55 AYDGKFEKTISGHKLGISDVAWSSDS-----NLLVSASDDKTLKIWDVS--SGKCLKTLK 107
Query: 236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD 295
+ V C+++ +++V G + ++ +
Sbjct: 108 GHS--------------------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVN 353
C+ L + ++ FN G+ L+ + G +W+ + LK V+
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVS 199
Query: 354 CLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413
+ +SP+ + + DN +K+W S G C T+T H N
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE-------------------- 239
Query: 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL 473
+Y F F+ G+ I +G+ D+ +++W+++T ++ L
Sbjct: 240 --------KYCIFANFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKL 278
Query: 474 SGHEGPVHGLVFSPTNATLASSSW--DKTVRLW 504
GH V PT +AS++ DKT++LW
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 81
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 130
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 131 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 162
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 220
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 28 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 85
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 146 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 202
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 203 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 262
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 263 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 298
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 106 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 165
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 166 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 225
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 226 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 283
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 284 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 82
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 83 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 124
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 125 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 169
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 170 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 228 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 259
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 260 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 306
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 307 TENIIASAALENDKTIKLW 325
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 95
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 96 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 144
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 145 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 176
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 234
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 235 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 295 HTDVVISTACHPTENIIASAALENDKTIKLW 325
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 74
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 191
Query: 472 ILSGHEGPVHGLV-FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + P V FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 215 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 272
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 273 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 71
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 72 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 113
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 114 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 159 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 217 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 248
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 249 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 296 TENIIASAALENDKTIKLW 314
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 84
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 85 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 133
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 134 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 165
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 223
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 16 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 73
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 134 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 190
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 191 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 250
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 251 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 286
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 94 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 153
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 154 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 213
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 214 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 271
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 272 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 70
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 71 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 112
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 113 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 157
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 158 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 216 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 247
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 248 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 294
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 295 TENIIASAALENDKTIKLW 313
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 83
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 84 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 132
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 133 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 164
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 222
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 223 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 283 HTDVVISTACHPTENIIASAALENDKTIKLW 313
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 7 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 64
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 125 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 181
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 182 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 241
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 242 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 277
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 85 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 144
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 145 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 204
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 205 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 262
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 263 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 61
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 62 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 103
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 104 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 148
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 149 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 206
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 207 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 238
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 239 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 285
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 286 TENIIASAALENDKTIKLW 304
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 74
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 75 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 123
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 124 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 155
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 213
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 214 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 274 HTDVVISTACHPTENIIASAALENDKTIKLW 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 10 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 67
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 128 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 184
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 185 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 244
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 245 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 280
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 88 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 147
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 148 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 207
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 208 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 265
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 266 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 64
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 65 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 106
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 107 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 151
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 152 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 209
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 210 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 241
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 242 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 288
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 289 TENIIASAALENDKTIKLW 307
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 77
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 78 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 126
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 127 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 158
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 216
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 217 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 277 HTDVVISTACHPTENIIASAALENDKTIKLW 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 68
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 185
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 209 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 266
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 267 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 65
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 66 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 107
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 108 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 153 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 242
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 243 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 290 TENIIASAALENDKTIKLW 308
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 78
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 79 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 127
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 128 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 159
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 217
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 17 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 74
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 191
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 192 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 251
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 287
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 95 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 154
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 155 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 214
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 215 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 272
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 273 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 71
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 72 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 113
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 114 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 158
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 159 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 217 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 248
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 249 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 296 TENIIASAALENDKTIKLW 314
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 84
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 85 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 133
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 134 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 165
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 223
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLW 314
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 12 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 69
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 130 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 186
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 187 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 246
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 247 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 282
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 90 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 149
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 150 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 209
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 210 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 267
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 268 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 66
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 67 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 108
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 109 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 153
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 154 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 212 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 243
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 244 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 290
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 291 TENIIASAALENDKTIKLW 309
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 79
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 80 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 128
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 129 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 160
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 218
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 219 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 279 HTDVVISTACHPTENIIASAALENDKTIKLW 309
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 130/276 (47%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 11 PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 68
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ + +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 129 ESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 185
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D T++LW+ +GK H ++ +
Sbjct: 186 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 245
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 281
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 89 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 208
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ + +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 209 AATLDN-TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL- 266
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 267 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/379 (19%), Positives = 145/379 (38%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 65
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 66 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 107
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + C+ L + +
Sbjct: 108 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 152
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 153 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 242
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ G+ I +G+ D+ +++W+++T ++ L GH V P
Sbjct: 243 NFSV------------TGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 290 TENIIASAALENDKTIKLW 308
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 138/331 (41%), Gaps = 56/331 (16%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 78
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I + +
Sbjct: 79 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVSGSF 127
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274
D + W GK +T+ P V+A ++R
Sbjct: 128 DESVRIWDV--KTGKCLKTLPAHSDP--------------------------VSAVHFNR 159
Query: 275 GLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQLL- 332
++V +G+ ++ C+ L+ ++ F+ G +++ A L L
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL--AATLDNTLK 217
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389
+W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 390 HTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLW 308
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 129/276 (46%), Gaps = 11/276 (3%)
Query: 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDV 352
P++ + L+ + +++ F+ G WL A KL + +W + GH +
Sbjct: 14 PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKL--IKIWGAYDGKFEKTISGHKLGI 71
Query: 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412
+ +A+S DS LL + +DD +K+W VSSG C T H+N V +F ++ ++S S D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+VR WD+ +T P+ VS ++ G +I + + D +W +G+ L
Sbjct: 132 ESVRIWDVKTGMCLKTL--PAHSDPVSAVHFNRDGSLIVSSSYDGL-CRIWDTASGQCLK 188
Query: 472 ILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-- 528
L + PV + FSP + +++ D ++LW+ +GK H ++ +
Sbjct: 189 TLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFS 248
Query: 529 -PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
G+ + + D ++ W+ E++ ++G D+
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDV 284
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 8/222 (3%)
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390
L +W+ S + +GH V C ++P S L+ +G+ D V++W V +G C T H
Sbjct: 92 LKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAH 151
Query: 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
++ V+A+HF + ++S+S DG R WD + +T + + +G+ I
Sbjct: 152 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 211
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLV--FSPTNAT-LASSSWDKTVRLWNVF 507
A TLD+ ++ +W G+ L +GH+ + + FS T + S S D V +WN+
Sbjct: 212 AATLDN-DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL- 269
Query: 508 EGKGSVESFP-HTHDVLTVVYRPDGRQLACSTL--DGQIHFW 546
+ K V+ HT V++ P +A + L D I W
Sbjct: 270 QTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 72/379 (18%), Positives = 144/379 (37%), Gaps = 88/379 (23%)
Query: 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK-PFLLLGHR 189
+ L+ TLA V+++ +SP+ +L S D ++++ G + K + GH+
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW-------GAYDGKFEKTISGHK 68
Query: 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249
+ +S D N + + + D + W S GK +T++
Sbjct: 69 LGISDVAWSSDS-----NLLVSASDDKTLKIWDVSS--GKCLKTLKGHS----------- 110
Query: 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309
+ V C+++ +++V G + ++ + +C+ L + +
Sbjct: 111 ---------------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPV 155
Query: 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATG 367
+ FN G+ L+ + G +W+ + LK V+ + +SP+ + +
Sbjct: 156 SAVHFNRDGS-LIVSSSYDGLCRIWD-TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
DN +K+W S G C T+T H N +Y F
Sbjct: 214 TLDNDLKLWDYSKGKCLKTYTGHKNE----------------------------KYCIFA 245
Query: 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487
F+ + VS + D +++W+++T ++ L GH V P
Sbjct: 246 NFSVTGGKWIVSGSEDN-------------MVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 488 TNATLASSSW--DKTVRLW 504
T +AS++ DKT++LW
Sbjct: 293 TENIIASAALENDKTIKLW 311
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 136/333 (40%), Gaps = 60/333 (18%)
Query: 96 VNAILFSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V+++ FSPNG+++A + KL++IW + K E +T++ ++ + WS DSN
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-------KTISGHKLGISDVAWSSDSN 81
Query: 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
L+ S D ++++ V K + T L GH + V C F+ + N I +
Sbjct: 82 LLVSASDDKTLKIWDVSSG-KCLKT-----LKGHSNYVFCCNFN-----PQSNLIVS--- 127
Query: 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK---VTACD 271
G DE+ V+ W + P+ V+A
Sbjct: 128 -------------GSFDES---------------VRIWDVKTGMCLKTLPAHSDPVSAVH 159
Query: 272 YHRGLDMVVVGFSNGVFGLYQMPDFVCIH-LLSISREKITTAVFNELGNWLVFGCAKLGQ 330
++R ++V +G+ ++ C+ L+ ++ F+ G +++
Sbjct: 160 FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-ND 218
Query: 331 LLVWEWRSESYILKQQGHYFDVNCLAYS---PDSQLLATGADDNKVKVWTVSSGFCFVTF 387
L +W++ + GH + C+ + + + +G++DN V +W + +
Sbjct: 219 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKL 278
Query: 388 TEHTNAVTALHFMANNHSLLSASL--DGTVRAW 418
HT+ V + + + SA+L D T++ W
Sbjct: 279 QGHTDVVISTACHPTENIIASAALENDKTIKLW 311
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 27/257 (10%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
+ + +SPD + LATGA+D +++W + + + H + +L + + L+S S
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
D TVR WDL + T + V++ S G+ I AG+LD + VW +TG L++
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAV-SPGDGKYIAAGSLDR-AVRVWDSETGFLVE 243
Query: 472 IL-------SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES--------- 515
L +GH+ V+ +VF+ ++ S S D++V+LWN+ +S
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE 303
Query: 516 ---FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD------ISGG 566
H VL+V + + + D + FWD +G + ++G R+ ++ G
Sbjct: 304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363
Query: 567 RLMTDRRSAANSSSGKC 583
+ + + SG C
Sbjct: 364 SSLGPEYNVFATGSGDC 380
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 23/165 (13%)
Query: 480 VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL 539
+ + FSP LA+ + D+ +R+W++ K + H D+ ++ Y P G +L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 540 DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYS-ADGSYILA 598
D + WD G+ T+ I G TT+ S DG YI A
Sbjct: 186 DRTVRIWDLRTGQCSLTLS----IEDG-----------------VTTVAVSPGDGKYIAA 224
Query: 599 GGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAG 643
G + + ++D L+ R + N S G D + S T G
Sbjct: 225 GSLDRAVRVWDSETGFLVERLD-SENESGTGHKDSVYSVVFTRDG 268
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/306 (19%), Positives = 120/306 (39%), Gaps = 71/306 (23%)
Query: 96 VNAILFSPNGKYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
+ ++ FSP+GK++A G +L++IW ++ +++ L + +L++ P +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW-------DIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 155 YLLVGSKDLAVRLFYVKEKL--------KGIHT------NKPFLLLGHRDSVVGCFFS-- 198
L+ GS D VR++ ++ G+ T + ++ G D V + S
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 199 --VDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR 256
+ ++ D N T +D ++S F+ D + G+ +R VK W L
Sbjct: 239 GFLVERLDSENESGTGHKDS-VYSVVFT----------RDGQSVVSGSLDRSVKLWNLQN 287
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
++ S + + P+ + I + +V
Sbjct: 288 ANNKSDS----------------------------KTPNSGTCEVTYIGHKDFVLSVATT 319
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV------NCLAYSPDSQLLATGADD 370
+ + +K +L W+ +S + +L QGH V N + P+ + ATG+ D
Sbjct: 320 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 379
Query: 371 NKVKVW 376
K ++W
Sbjct: 380 CKARIW 385
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
+S HT V V + DG LA + + + +G L+ + D + + +
Sbjct: 59 KSLDHTSVVCCVKFSNDGEYLA-TGCNKTTQVYRVSDGSLVARLSD--DSAANKDPENLN 115
Query: 574 SAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ 620
++++ SS ++C+S DG ++ G + I ++D+ ++ ++ Q
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ 162
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
+W+ + GH DV L+ +PD++L +GA D K+W V G C TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
+ A+ F N ++ + S D T R +DL + T++ + S++ +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
G D F VW +L+GH+ V L + +A+ SWD +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
T H + A+H+ ++ LLSAS DG + WD + SS ++ A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
G + G LD+ ++++KT R+ L+GH G + F N + +SS D T
Sbjct: 109 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTC 166
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
LW++ G+ + HT DV+++ PD R D WD G T G
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
DI+ +C+ +G+ G ++D+ ADQ L+
Sbjct: 227 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 262
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
S D +I + S + +++G + L DD N + + ++ G L
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 33/281 (11%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH + + + DS+LL + + D K+ +W + ++ V + + +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 406 LLSASLDGTVRAWDL-FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF---- 460
+ LD ++L R N R SR+ +G + C LD +I
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRV-----SRELAG----HTGYLSCCRFLDDNQIVTSSG 162
Query: 461 -----VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
+W ++TG+ +GH G V L +P S + D + +LW+V EG
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG---------G 566
H D+ + + P+G A + D +D + + T I G G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
RL+ A C AD + +LAG ++ C+
Sbjct: 283 RLLL-----AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
+W+ + GH DV L+ +PD++L +GA D K+W V G C TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
+ A+ F N ++ + S D T R +DL + T++ + S++ +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
G D F VW +L+GH+ V L + +A+ SWD +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 115/289 (39%), Gaps = 37/289 (12%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
T H + A+H+ ++ L+SAS DG + WD + SS ++ A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSF-EIFVWSMKTG--RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVR 502
G + G LD+ I+ + G R+ L+GH G + F N + SS D T
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCA 167
Query: 503 LWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR- 561
LW++ G+ + HT DV+++ PD R D WD G T G
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 562 DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRFQ 620
DI+ +C+ +G+ G ++D+ ADQ L+
Sbjct: 228 DINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM---- 262
Query: 621 ITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
S D +I + S + +++G + L DD N + + ++ G L
Sbjct: 263 ---TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 33/281 (11%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH + + + DS+LL + + D K+ +W + ++ V + + +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 406 LLSASLDGTVRAWDL-FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF---- 460
+ LD ++L R N R SR+ +G + C LD +I
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRV-----SRELAG----HTGYLSCCRFLDDNQIVTSSG 162
Query: 461 -----VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
+W ++TG+ +GH G V L +P S + D + +LW+V EG
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG---------G 566
H D+ + + P+G A + D +D + + T I G G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
RL+ A C AD + +LAG ++ C+
Sbjct: 283 RLLL-----AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
+W+ + GH DV L+ +PD++L +GA D K+W V G C TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
+ A+ F N ++ + S D T R +DL + T++ + S++ +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
G D F VW +L+GH+ V L + +A+ SWD +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
T H + A+H+ ++ LLSAS DG + WD + SS ++ A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
G + G LD+ ++++KT R+ L+GH G + F N + +SS D T
Sbjct: 109 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTC 166
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
LW++ G+ + HT DV+++ PD R D WD G T G
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
DI+ +C+ +G+ G ++D+ ADQ L+
Sbjct: 227 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 262
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
S D +I + S + +++G + L DD N + + ++ G L
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 33/281 (11%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH + + + DS+LL + + D K+ +W + ++ V + + +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 406 LLSASLDGTVRAWDL-FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF---- 460
+ LD ++L R N R SR+ +G + C LD +I
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRV-----SRELAG----HTGYLSCCRFLDDNQIVTSSG 162
Query: 461 -----VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
+W ++TG+ +GH G V L +P S + D + +LW+V EG
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG---------G 566
H D+ + + P+G A + D +D + + T I G G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
RL+ A C AD + +LAG ++ C+
Sbjct: 283 RLLL-----AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
+W+ + GH DV L+ +PD++L +GA D K+W V G C TFT H +
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
+ A+ F N ++ + S D T R +DL + T++ + S++ +SG ++ A
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
G D F VW +L+GH+ V L + +A+ SWD +++WN
Sbjct: 299 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 118/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
T H + A+H+ ++ L+SAS DG + WD + SS ++ A S
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 119
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
G + G LD+ ++++KT R+ L+GH G + F N + +SS D T
Sbjct: 120 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTC 177
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
LW++ G+ + HT DV+++ PD R D WD G T G
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
DI+ +C+ +G+ G ++D+ ADQ L+
Sbjct: 238 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 273
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
S D +I + S + +++G + L DD N + + ++ G L
Sbjct: 274 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 319
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 33/281 (11%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH + + + DS+LL + + D K+ +W + ++ V + + +
Sbjct: 63 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 122
Query: 406 LLSASLDGTVRAWDL-FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF---- 460
+ LD ++L R N R SR+ +G + C LD +I
Sbjct: 123 VACGGLDNICSIYNLKTREGNVRV-----SRELAG----HTGYLSCCRFLDDNQIVTSSG 173
Query: 461 -----VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
+W ++TG+ +GH G V L +P S + D + +LW+V EG
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 233
Query: 516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG---------G 566
H D+ + + P+G A + D +D + + T I G G
Sbjct: 234 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 293
Query: 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
RL+ A C AD + +LAG ++ C+
Sbjct: 294 RLLL-----AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 329
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
+W+ + GH DV L+ +PD++L +GA D K+W V G C TFT H +
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR-QFVSLASDQSGEVICA 451
+ A+ F N ++ + S D T R +DL + T++ + S++ +SG ++ A
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505
G D F VW +L+GH+ V L + +A+ SWD +++WN
Sbjct: 288 G-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445
T H + A+H+ ++ L+SAS DG + WD + SS ++ A S
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPS 108
Query: 446 GEVICAGTLDSFEIFVWSMKTG----RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
G + G LD+ ++++KT R+ L+GH G + F N + SS D T
Sbjct: 109 GNYVACGGLDNI-CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTC 166
Query: 502 RLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561
LW++ G+ + HT DV+++ PD R D WD G T G
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 562 -DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV-ADQVLLRRF 619
DI+ +C+ +G+ G ++D+ ADQ L+
Sbjct: 227 SDINA---------------------ICFFPNGNAFATGSDDATCRLFDLRADQELM--- 262
Query: 620 QITHNLSLDGVIDFLNSKNMTEAGPMDLI--DDDNSDTEEGVEKQTRGKL 667
S D +I + S + +++G + L DD N + + ++ G L
Sbjct: 263 ----TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 106/281 (37%), Gaps = 33/281 (11%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH + + + DS+LL + + D K+ +W + ++ V + + +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 406 LLSASLDGTVRAWDL-FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF---- 460
+ LD ++L R N R SR+ +G + C LD +I
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRV-----SRELAG----HTGYLSCCRFLDDNQIVTSSG 162
Query: 461 -----VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
+W ++TG+ +GH G V L +P S + D + +LW+V EG
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF 222
Query: 516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG---------G 566
H D+ + + P+G A + D +D + + T I G G
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282
Query: 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607
RL+ A C AD + +LAG ++ C+
Sbjct: 283 RLLL-----AGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 79/182 (43%), Gaps = 10/182 (5%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS--QLLATGADDNKVKVWTVSSGFCFVT 386
G +W+ S + GH DV CL +P +G D K VW + SG C
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235
Query: 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-- 444
F H + V ++ + + + S S D T R +DL R R S + AS
Sbjct: 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDL---RADREVAIYSKESIIFGASSVDF 292
Query: 445 --SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVR 502
SG ++ AG D + I VW + G + IL GHE V L SP S SWD T+R
Sbjct: 293 SLSGRLLFAGYND-YTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351
Query: 503 LW 504
+W
Sbjct: 352 VW 353
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 113/251 (45%), Gaps = 26/251 (10%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNC-----LAYSPDSQLLATGADDNKVKVWTVS---- 379
G+++VW+ S+ ++ H + C AY+P +A G DNK V+ ++
Sbjct: 86 GKVIVWD----SFTTNKE-HAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKN 140
Query: 380 --SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF 437
+ HTN ++A F ++ +L+AS DGT WD+ + ++F +
Sbjct: 141 ENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL 200
Query: 438 -VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS 496
+ LA ++G +G D + VW M++G+ + HE V+ + + P+ AS S
Sbjct: 201 CLDLAPSETGNTFVSGGCDK-KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 497 WDKTVRLWNVFEGKGSVESFPHTHDVL-----TVVYRPDGRQLACSTLDGQIHFWDPLNG 551
D T RL+++ + E ++ + + +V + GR L D I+ WD L G
Sbjct: 260 DDATCRLYDL---RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316
Query: 552 ELMYTIEGRRD 562
+ + G +
Sbjct: 317 SRVSILFGHEN 327
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 149/345 (43%), Gaps = 29/345 (8%)
Query: 227 DGKIDETMEDSEPPSPGTPERRVKKW--GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS 284
+ K++E E+ P +R K+W K S S VT +H ++V
Sbjct: 69 ESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASE 128
Query: 285 NGVFGL--YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI 342
+ + Y+ DF L + + F+ G L+ C+ + +W+++ I
Sbjct: 129 DATIKVWDYETGDFE--RTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECI 185
Query: 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN 402
GH +V+ ++ P+ + + + D +K+W V +G+C TFT H V + +
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 403 NHSLLSASLDGTVRAW---------DLFRYRNFR---TFTTPSSRQFVSLA-------SD 443
+ S S D TVR W +L +R+ ++ SS +S A S
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 444 QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL 503
+ G + +G+ D I +W + TG L L GH+ V G++F + S + DKT+R+
Sbjct: 306 KPGPFLLSGSRDK-TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 504 WNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
W+ ++ K +++ H H V ++ + + ++D + W+
Sbjct: 365 WD-YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 25/279 (8%)
Query: 300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP 359
+ LS R +T +F+ + + +V ++ + VW++ + + +GH V +++
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMV-SASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 160
Query: 360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419
+LLA+ + D +K+W C T H + V+++ M N ++SAS D T++ W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 420 LFRYRNFRTFTTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478
+ +TFT R++V + +Q G +I + + D + VW + T L H
Sbjct: 221 VQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSNDQ-TVRVWVVATKECKAELREHRH 277
Query: 479 PVHGLVFSP-------TNAT-------------LASSSWDKTVRLWNVFEGKGSVESFPH 518
V + ++P + AT L S S DKT+++W+V G + H
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 337
Query: 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557
+ V V++ G+ + D + WD N M T+
Sbjct: 338 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 116/293 (39%), Gaps = 47/293 (16%)
Query: 339 ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
E Y L GH V + + P ++ + ++D +KVW +G T HT++V +
Sbjct: 100 EKYAL--SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 157
Query: 399 FMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458
F + L S S D T++ WD + RT S++ +G+ I + + D
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSASRDK-T 215
Query: 459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH 518
I +W ++TG + +GH V + + +AS S D+TVR+W V + E H
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Query: 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS 578
H V + + P+ + S G +
Sbjct: 276 RHVVECISWAPESSYSSISEATG---------------------------------SETK 302
Query: 579 SSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVI 631
SGK G ++L+G K I M+DV+ + L + H+ + GV+
Sbjct: 303 KSGK---------PGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVL 345
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 116/305 (38%), Gaps = 74/305 (24%)
Query: 96 VNAILFSPNGKYIAVGTGKL-VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN 154
V I F +GK +A + + +++W GF E IRT+ + V++++ P+ +
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGF-------ECIRTMHGHDHNVSSVSIMPNGD 205
Query: 155 YLLVGSKDLAVRLFYV------------KEKLKGIHTNKPFLLLG--HRDSVVGCFFSVD 200
+++ S+D ++++ V +E ++ + N+ L+ D V +
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 201 KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET----MEDSEPPSP----GTPERRVKKW 252
K+ R + +C SW + I E + S P P G+ ++ +K W
Sbjct: 266 KECKAELREHRHVVEC--ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Query: 253 GLLRKDDFSQAPSKVTACDYHRGLD-MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITT 311
D G+ M +VG N V G+
Sbjct: 324 ------------------DVSTGMCLMTLVGHDNWVRGV--------------------- 344
Query: 312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN 371
+F+ G + CA L VW+++++ + H V L + + + TG+ D
Sbjct: 345 -LFHSGGK-FILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 372 KVKVW 376
VKVW
Sbjct: 403 TVKVW 407
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 123/270 (45%), Gaps = 10/270 (3%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
GH V + S D Q +G+ D ++++W +++G F HT V ++ F +N +
Sbjct: 428 GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQI 487
Query: 407 LSASLDGTVRAWD-LFRYRNFRTFTTPSSRQFVS---LASDQSGEVICAGTLDSFEIFVW 462
+SAS D T++ W+ L + + R +VS + + I + + D + VW
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-TVKVW 546
Query: 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDV 522
++ +L L+GH G V + SP + AS D V LW++ EGK + S +
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK-KLYSLEANSVI 605
Query: 523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK 582
+ + P+ R C+ + I WD + ++ + + D+ D A +
Sbjct: 606 HALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDL--KVDLKAEAEKADNSGPAATKRKV 662
Query: 583 CF-TTLCYSADGSYILAGGSSKYICMYDVA 611
+ T+L +SADGS + +G + I ++ +
Sbjct: 663 IYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 29/168 (17%)
Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
L+GH V +V S S SWD +RLW++ G + HT DVL+V + D R
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 533 QLACSTLDGQIHFWDPLNGELMYTI----EGRRD------ISGGRLMTDRRSAANSSSGK 582
Q+ ++ D I W+ L GE YTI EG RD S L SA+ + K
Sbjct: 486 QIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 583 CF------------------TTLCYSADGSYILAGGSSKYICMYDVAD 612
+ +T+ S DGS +GG + ++D+A+
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 55 ICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGK 114
+ +AVSPDG+ + ++ +L L+ + ++A+ FSPN ++ T
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEH 623
Query: 115 LVQIWRSPGFKKEVFAFELIRTLADCNDKV---------------TALNWSPDSNYLLVG 159
++IW + + +L L +K T+LNWS D + L G
Sbjct: 624 GIKIWD---LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680
Query: 160 SKDLAVRLFYV 170
D +R++ +
Sbjct: 681 YTDGVIRVWGI 691
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 127/274 (46%), Gaps = 20/274 (7%)
Query: 344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN 403
+ +GH V+ +A S + + + D+ +++W + +G C F HT V ++ F +N
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 404 HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS---LASDQSGEVICAGTLDSFEIF 460
++S D +R W++ + T + + +VS + VI +G D+ +
Sbjct: 122 RQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNL-VK 179
Query: 461 VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTH 520
VW + TGRL+ L GH V + SP + ASS D RLW++ +G+ ++
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE-ALSEMAAGA 238
Query: 521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS 580
+ + + P+ R C+ + I +D N +++ +E + G + +
Sbjct: 239 PINQICFSPN-RYWMCAATEKGIRIFDLENKDII--VELAPEHQGSKKIVP--------- 286
Query: 581 GKCFTTLCYSADGSYILAGGSSKYICMYDVADQV 614
+C ++ +SADGS + +G + I ++ V++
Sbjct: 287 -ECV-SIAWSADGSTLYSGYTDNVIRVWGVSENA 318
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 47/259 (18%)
Query: 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532
L GH V + S S+SWD ++RLWN+ G+ + HT DVL+V + PD R
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD 592
Q+ D + W+ + GE M+T+ A++ C S D
Sbjct: 123 QIVSGGRDNALRVWN-VKGECMHTLS---------------RGAHTDWVSCV-RFSPSLD 165
Query: 593 GSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDN 652
I++GG + ++D+A L+ L G +++ S ++ G + D
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLV--------TDLKGHTNYVTSVTVSPDGSLCASSD-- 215
Query: 653 SDTEEGVEK---QTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
++GV + T+G+ ++ P I C +P AAT +G+ ++
Sbjct: 216 ---KDGVARLWDLTKGEALSEMAAGAP------INQICF--SPNRYWMCAATEKGIRIFD 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
++ D+ +++ PE
Sbjct: 265 LENK------DIIVELAPE 277
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 36/334 (10%)
Query: 185 LLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGT 244
L GHR V + + + ++ + +RD + SWG + + S S G
Sbjct: 9 LTGHRGWVTS--LACPQTPETATKVVSTSRDKTLLSWGPNPD--------RHSSECSYGL 58
Query: 245 PERRVKKWGLLRKD-DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS 303
P+RR++ D S + + + L L+ + + C +
Sbjct: 59 PDRRLEGHSAFVSDVALSNNGNFAVSASWDHSLR------------LWNLQNGQCQYKFL 106
Query: 304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES-YILKQQGHYFDVNCLAYSP--D 360
+ + + F+ +V G + L VW + E + L + H V+C+ +SP D
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSG-GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLD 165
Query: 361 SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420
+ ++ +G DN VKVW +++G HTN VT++ + S+ DG R WDL
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Query: 421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV 480
+ + + + ++ +CA T IF K ++++ H+G
Sbjct: 226 TKGEALSEMAAGAPINQICFSPNR--YWMCAATEKGIRIFDLENKD-IIVELAPEHQGSK 282
Query: 481 H------GLVFSPTNATLASSSWDKTVRLWNVFE 508
+ +S +TL S D +R+W V E
Sbjct: 283 KIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR 91
N V V DL + VT ++ + + VSPDG+ + D++ +L L +
Sbjct: 176 NLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMA 235
Query: 92 FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELI-------RTLADCNDKV 144
P+N I FSPN ++ T K ++I+ + + EL + + +C
Sbjct: 236 AGAPINQICFSPNRYWMCAATEKGIRIFD---LENKDIIVELAPEHQGSKKIVPEC---- 288
Query: 145 TALNWSPDSNYLLVGSKDLAVRLFYVKE 172
++ WS D + L G D +R++ V E
Sbjct: 289 VSIAWSADGSTLYSGYTDNVIRVWGVSE 316
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
+GH V LA S LL + + D + W ++ G +F H++ V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
A+ LSAS D T+R WD+ ++ F S +S+ D+ +I +G+ D I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
VW++K G+ L L GH V + P + T+ S+ DK V+ WN+ + +
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
+ H ++ T+ PDG +A + DG+I W+ + MYT+ + ++ +R
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
+AA ++ K F+ +L +SADG + AG + I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
++ V
Sbjct: 311 RVWQV 315
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
GH V + A S+SWDKT+RLW+V G+ H DV++V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
+ D I W + G+ + T+ G D +S R++ + ++ +S +
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
I++ G+ K + ++ L +FQI DF+ N +T + LI
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
D E + K Y L + L +P AAT G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
+D ++ D D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
+SNI + SPDGT + + ++ NL ++ + + V ++ FSPN ++A
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 112 TGKLVQIWR-SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
T ++++ P + + E +L WS D L G D +R++ V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
+GH V LA S LL + + D + W ++ G +F H++ V
Sbjct: 8 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 67
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
A+ LSAS D T+R WD+ ++ F S +S+ D+ +I +G+ D I
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 125
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
VW++K G+ L L GH V + P + T+ S+ DK V+ WN+ + +
Sbjct: 126 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 184
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
+ H ++ T+ PDG +A + DG+I W+ + MYT+ + ++ +R
Sbjct: 185 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 244
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
+AA ++ K F+ +L +SADG + AG + I
Sbjct: 245 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 606 CMYDV 610
++ V
Sbjct: 305 RVWQV 309
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
GH V + A S+SWDKT+RLW+V G+ H DV++V +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 116
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
+ D I W + G+ + T+ G D +S R++ + ++ +S +
Sbjct: 117 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 162
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
I++ G+ K + ++ L +FQI DF+ N +T + LI
Sbjct: 163 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 206
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
D E + K Y L + L +P AAT G+ V+S
Sbjct: 207 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 258
Query: 710 IDESFIFDPTDLDIDVTPE 728
+D ++ D D+ PE
Sbjct: 259 LDPQYLVD------DLRPE 271
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
+SNI + SPDGT + + ++ NL ++ + + V ++ FSPN ++A
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 249
Query: 112 TGKLVQIWR-SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
T ++++ P + + E +L WS D L G D +R++ V
Sbjct: 250 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
+GH V LA S LL + + D + W ++ G +F H++ V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
A+ LSAS D T+R WD+ ++ F S +S+ D+ +I +G+ D I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
VW++K G+ L L GH V + P + T+ S+ DK V+ WN+ + +
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
+ H ++ T+ PDG +A + DG+I W+ + MYT+ + ++ +R
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
+AA ++ K F+ +L +SADG + AG + I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
++ V
Sbjct: 311 RVWQV 315
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
GH V + A S+SWDKT+RLW+V G+ H DV++V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
+ D I W + G+ + T+ G D +S R++ + ++ +S +
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
I++ G+ K + ++ L +FQI DF+ N +T + LI
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
D E + K Y L + L +P AAT G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
+D ++ D D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
+SNI + SPDGT + + ++ NL ++ + + V ++ FSPN ++A
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 112 TGKLVQIWR-SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
T ++++ P + + E +L WS D L G D +R++ V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 131/305 (42%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
+GH V LA S LL + + D + W ++ G +F H++ V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
A+ LSAS D T+R WD+ ++ F S +S+ D+ +I +G+ D I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
VW++K G+ L L GH V + P + T+ S+ DK V+ WN+ + +
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
+ H ++ T+ PDG +A + DG+I W+ + MYT+ + ++ +R
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
+AA ++ K F+ +L +SADG + AG + I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
++ V
Sbjct: 311 RVWQV 315
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
GH V + A S+SWDKT+RLW+V G+ H DV++V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
+ D I W + G+ + T+ G D +S R++ + ++ +S +
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
I++ G+ K + ++ L +FQI DF+ N +T + LI
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
D E + K Y L + L +P AAT G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
+D ++ D D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
+SNI + SPDGT + + ++ NL ++ + + V ++ FSPN ++A
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 112 TGKLVQIWR-SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
T ++++ P + + E A +L WS D L G D +R++ V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/303 (24%), Positives = 130/303 (42%), Gaps = 43/303 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
+GH V LA S LL + + D + W ++ G +F H++ V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
A+ LSAS D T+R WD+ ++ F S +S+ D+ +I +G+ D I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
VW++K G+ L L GH V + P + T+ S+ DK V+ WN+ + +
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
+ H ++ T+ PDG +A + DG+I W+ + MYT+ + ++ +R
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
+AA ++ K F+ +L +SADG + AG + I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMY 608
++
Sbjct: 311 RVW 313
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 49/259 (18%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534
GH V + A S+SWDKT+RLW+V G+ H DV++V +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 535 ACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
+ D I W + G+ + T+ G D +S R++ + ++ +S +
Sbjct: 123 ISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT------------- 168
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFL----NSKNMTEAGPMDLID 649
I++ G+ K + ++ L +FQI DF+ N +T + LI
Sbjct: 169 --IISAGNDKMVKAWN------LNQFQIE--------ADFIGHNSNINTLTASPDGTLIA 212
Query: 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709
D E + K Y L + L +P AAT G+ V+S
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA--------QDEVFSLAFSPNRYWLAAATATGIKVFS 264
Query: 710 IDESFIFDPTDLDIDVTPE 728
+D ++ D D+ PE
Sbjct: 265 LDPQYLVD------DLRPE 277
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
+SNI + SPDGT + + ++ NL ++ + + V ++ FSPN ++A
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 112 TGKLVQIWR-SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF 168
T ++++ P + + E +L WS D L G D +R++
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 37/252 (14%)
Query: 150 SPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKT------ 203
+ D Y L S D +RL+ V T + F+ GH+ V+ +DKK
Sbjct: 74 TADGAYALSASWDKTLRLWDVATG----ETYQRFV--GHKSDVMSV--DIDKKASMIISG 125
Query: 204 --DKVNRIYTIARDCYMFSWGFSGNDGKI-----DETMEDSEPPSPGTPERRVKKWGLLR 256
DK +++TI C G + ++ ++ +DS ++ VK W L +
Sbjct: 126 SRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 257 ---KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAV 313
+ DF S + ++ +G L+ + ++ LS +++++ +
Sbjct: 186 FQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDEVFSLA 244
Query: 314 FNELGNWLVFGCAKL-------GQLLVWEWRSE--SYILKQQGHYFDVNCLAYSPDSQLL 364
F+ WL A Q LV + R E Y + H LA+S D Q L
Sbjct: 245 FSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAV---SLAWSADGQTL 301
Query: 365 ATGADDNKVKVW 376
G DN ++VW
Sbjct: 302 FAGYTDNVIRVW 313
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 114/296 (38%), Gaps = 74/296 (25%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH V+ + S D Q +G+ D +++W +++G F HT V ++ F ++N
Sbjct: 60 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 119
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
++S S D T++ W+ +C T+
Sbjct: 120 IVSGSRDKTIKLWNTLG--------------------------VCKYTVQD--------- 144
Query: 466 TGRLLDILSGHEGPVHGLVFSP--TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523
H V + FSP +N + S WDK V++WN+ K HT +
Sbjct: 145 --------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 196
Query: 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR---------------------- 561
TV PDG A DGQ WD G+ +YT++G
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSI 256
Query: 562 ---DISGGRLMTDRRSAANSSSGKC----FTTLCYSADGSYILAGGSSKYICMYDV 610
D+ G ++ + + S+S K T+L +SADG + AG + + ++ V
Sbjct: 257 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
G L +W+ + + + GH DV +A+S D++ + +G+ D +K+W + G C T
Sbjct: 85 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQ 143
Query: 389 E--HTNAVTALHFMAN--NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ 444
+ H+ V+ + F N N ++S D V+ W+L + +T + ++
Sbjct: 144 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSP 202
Query: 445 SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW 504
G + +G D + +W + G+ L L G + ++ L FSP L +++ ++++W
Sbjct: 203 DGSLCASGGKDG-QAMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIW 259
Query: 505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL----DGQIHF 545
+ EGK V+ +V++ + + Q C++L DGQ F
Sbjct: 260 D-LEGKIIVDELK--QEVISTSSKAEPPQ--CTSLAWSADGQTLF 299
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFK 93
V V +L K T + + + + VSPDG+ + ++ + +L+ L+ +
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 94 YPVNAILFSPNGKYIAVGTGKLVQIWRSPG------FKKEVFAFELIRTLADCNDKVTAL 147
+NA+ FSPN ++ TG ++IW G K+EV + C T+L
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC----TSL 289
Query: 148 NWSPDSNYLLVGSKDLAVRLFYV 170
WS D L G D VR++ V
Sbjct: 290 AWSADGQTLFAGYTDNLVRVWQV 312
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
GH +N + SPD L A+G D + +W ++ G T + + + AL F N + L
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPNRYWL 248
Query: 407 LSASLDGTVRAWDL--------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458
+A+ +++ WDL + T + Q SLA G+ + AG D+
Sbjct: 249 CAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL- 306
Query: 459 IFVWSMKTG 467
+ VW + G
Sbjct: 307 VRVWQVTIG 315
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381
G+++V E + E + LA+S D Q L G DN V+VW V+ G
Sbjct: 263 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 114/296 (38%), Gaps = 74/296 (25%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH V+ + S D Q +G+ D +++W +++G F HT V ++ F ++N
Sbjct: 83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ 142
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
++S S D T++ W+ +C T+
Sbjct: 143 IVSGSRDKTIKLWNTLG--------------------------VCKYTVQD--------- 167
Query: 466 TGRLLDILSGHEGPVHGLVFSP--TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523
H V + FSP +N + S WDK V++WN+ K HT +
Sbjct: 168 --------ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN 219
Query: 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR---------------------- 561
TV PDG A DGQ WD G+ +YT++G
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSI 279
Query: 562 ---DISGGRLMTDRRSAANSSSGKC----FTTLCYSADGSYILAGGSSKYICMYDV 610
D+ G ++ + + S+S K T+L +SADG + AG + + ++ V
Sbjct: 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 107/225 (47%), Gaps = 18/225 (8%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
G L +W+ + + + GH DV +A+S D++ + +G+ D +K+W + G C T
Sbjct: 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQ 166
Query: 389 E--HTNAVTALHFMAN--NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ 444
+ H+ V+ + F N N ++S D V+ W+L + +T + ++
Sbjct: 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKTNHIGHTGYLNTVTVSP 225
Query: 445 SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW 504
G + +G D + +W + G+ L L G + ++ L FSP L +++ ++++W
Sbjct: 226 DGSLCASGGKDG-QAMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAAT-GPSIKIW 282
Query: 505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL----DGQIHF 545
+ EGK V+ +V++ + + Q C++L DGQ F
Sbjct: 283 D-LEGKIIVDELK--QEVISTSSKAEPPQ--CTSLAWSADGQTLF 322
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFK 93
V V +L K T + + + + VSPDG+ + ++ + +L+ L+ +
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 94 YPVNAILFSPNGKYIAVGTGKLVQIWRSPG------FKKEVFAFELIRTLADCNDKVTAL 147
+NA+ FSPN ++ TG ++IW G K+EV + C T+L
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC----TSL 312
Query: 148 NWSPDSNYLLVGSKDLAVRLFYV 170
WS D L G D VR++ V
Sbjct: 313 AWSADGQTLFAGYTDNLVRVWQV 335
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
GH +N + SPD L A+G D + +W ++ G T + + + AL F N + L
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDIINALCFSPNRYWL 271
Query: 407 LSASLDGTVRAWDL--------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458
+A+ +++ WDL + T + Q SLA G+ + AG D+
Sbjct: 272 CAAT-GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL- 329
Query: 459 IFVWSMKTG 467
+ VW + G
Sbjct: 330 VRVWQVTIG 338
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381
G+++V E + E + LA+S D Q L G DN V+VW V+ G
Sbjct: 286 GKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 105/239 (43%), Gaps = 19/239 (7%)
Query: 325 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSGF 382
C+ ++ +W+ + + H VNC ++ S LLATG++D +K+W ++
Sbjct: 682 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Query: 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS 442
C T HTN+V F ++ L S S DGT+R WD+ R N R S
Sbjct: 742 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV-RSANERKSINVKRFFLSSEDP 800
Query: 443 DQSGEVI---CAGTLDSFEIFVWSMK---------TGRLLDILSGHEGPVHGLVFSPTN- 489
+ EVI C+ + D +I V + +G L +I +GH + FSP +
Sbjct: 801 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 860
Query: 490 -ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
A +A S + V LWN+ + H V V++ PDG ++ D I W+
Sbjct: 861 LAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 62/320 (19%)
Query: 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLAT 366
E + AV N G L+ G K GQ+ Y+ + Q V+C SP + +A
Sbjct: 941 ETMVLAVDNIRGLQLIAG--KTGQI--------DYLPEAQ-----VSCCCLSPHLEYVAF 985
Query: 367 GADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL------ 420
G +D +K+ + + F + H AV + F A+ +L+S+S D ++ W+
Sbjct: 986 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1045
Query: 421 ---FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
+ F + +S + D GT + VW++ TGR+ + H+
Sbjct: 1046 FLQAHQETVKDFRLLQDSRLLSWSFD--------GT-----VKVWNVITGRIERDFTCHQ 1092
Query: 478 GPVHGLVFSPTNATLASSSWDKTVRLWN------VFEGKGSVESFPHTHDVLTVVYRPDG 531
G V S +S+S DKT ++W+ + E KG H V + DG
Sbjct: 1093 GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG------HNGCVRCSAFSLDG 1146
Query: 532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA 591
LA +G+I W+ +G+L++ S + + +A + G T +C+S
Sbjct: 1147 ILLATGDDNGEIRIWNVSDGQLLH--------SCAPISVEEGTATH---GGWVTDVCFSP 1195
Query: 592 DGSYILAGGSSKYICMYDVA 611
D +++ G Y+ ++VA
Sbjct: 1196 DSKTLVSAGG--YLKWWNVA 1213
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%)
Query: 357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416
+S D Q +A+ D ++V+ +G + H + V F +++ + + S D V+
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 689
Query: 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH 476
WD + T+ S + +++S ++ A + F + +W + + + GH
Sbjct: 690 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 749
Query: 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
V+ FSP + LAS S D T+RLW+V
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 121/560 (21%), Positives = 211/560 (37%), Gaps = 104/560 (18%)
Query: 101 FSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLV- 158
FS + YIA + K V+IW S K L+ T + +++V +++ SN+LL+
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLA 724
Query: 159 -GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY 217
GS D ++L+ + +K + GH +SV C FS D + + + + D
Sbjct: 725 TGSNDFFLKLWDLNQK------ECRNTMFGHTNSVNHCRFSPDDEL-----LASCSADGT 773
Query: 218 MFSWGF-SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL 276
+ W S N+ K VK++ L +D V C +
Sbjct: 774 LRLWDVRSANERK----------------SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 277 DMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335
D ++V N V + D LL+ I +T + + + L Q V
Sbjct: 818 DKIIVAAKNKVL----LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 873
Query: 336 WRSESY--ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV-----SSGFCF---- 384
W +S + +GH V+ + +SPD T +DD ++VW +S
Sbjct: 874 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 933
Query: 385 -VTFTEHTNAVTA------LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF-------- 429
V F E+ V A L +A + + V L + + F
Sbjct: 934 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK 993
Query: 430 --TTPSSRQFVSLASDQS----------GEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
P++R F S + G+ + + + DS I VW+ +TG + L H+
Sbjct: 994 IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV-IQVWNWQTGDYV-FLQAHQ 1051
Query: 478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS 537
V ++ L S S+D TV++WNV G+ + H VL+ D + + +
Sbjct: 1052 ETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597
+ D W + +L+ + + +G C +S DG +
Sbjct: 1111 SADKTAKIW---SFDLLSPLHELKGHNG-----------------CVRCSAFSLDGILLA 1150
Query: 598 AGGSSKYICMYDVADQVLLR 617
G + I +++V+D LL
Sbjct: 1151 TGDDNGEIRIWNVSDGQLLH 1170
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 34/251 (13%)
Query: 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI 449
HT+AV F + + S D T++ F + + + + + + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQ-----------VFKAETGEKLLDIKAHEDEVLC 669
Query: 450 CA-GTLDSF--------EIFVWSMKTGRLLDILSGHEGPVHGLVFS--PTNATLASSSWD 498
CA + DS+ ++ +W TG+L+ H V+ F+ + LA+ S D
Sbjct: 670 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 729
Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
++LW++ + + F HT+ V + PD LA + DG + WD + +
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD------VRSAN 783
Query: 559 GRRDISGGRLMTDRRSAANSSS--GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616
R+ I+ R KC + +SADG I+ +K + ++D+ LL
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK-VLLFDIHTSGLL 839
Query: 617 RRFQITHNLSL 627
H+ ++
Sbjct: 840 AEIHTGHHSTI 850
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-----VTF 387
+W + S + + +GH V C A+S D LLATG D+ ++++W VS G ++
Sbjct: 1118 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1177
Query: 388 TE----HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT 431
E H VT + F ++ +L+SA G ++ W++ + +TF T
Sbjct: 1178 EEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1223
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG 531
++ H V+ FS +AS DKT++++ G+ ++ H +VL + D
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 532 RQLACSTLDGQIHFWDPLNGELMYTIE 558
+A + D ++ WD G+L++T +
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYD 703
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 17/242 (7%)
Query: 321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTV 378
+ C+ ++ +W + + H VNC ++ S LLATG+ D +K+W +
Sbjct: 677 FIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 379 SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV 438
+ C T HTN+V F ++ L S S DGT++ WD ++ + F+
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINV--KQFFL 794
Query: 439 SLASDQSG-EVI---CAGTLDSF--------EIFVWSMKTGRLL-DILSGHEGPVHGLVF 485
+L Q EVI C+ + D +IF++ + T LL +I +GH + F
Sbjct: 795 NLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDF 854
Query: 486 SPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHF 545
SP N + V LWN + H V V++ PDG S+ D I
Sbjct: 855 SPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRL 914
Query: 546 WD 547
W+
Sbjct: 915 WE 916
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 36/269 (13%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
V+C SP Q +A G ++ +++ + + F + +H V + F A+ +L+S+S
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 412 DGTVRAWD------LF---RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW 462
D ++ W+ +F + F + + +S + D GT + VW
Sbjct: 1030 DAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFD--------GT-----VKVW 1076
Query: 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDV 522
++ TG H+G V S +S+S DKT ++W+ E H V
Sbjct: 1077 NIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCV 1136
Query: 523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK 582
+ D LA +G+I W+ NGEL++ L ++ G
Sbjct: 1137 RCSAFSVDSTLLATGDDNGEIRIWNVSNGELLH------------LCAPLSEEGAATHGG 1184
Query: 583 CFTTLCYSADGSYILAGGSSKYICMYDVA 611
T LC+S DG +++ G YI ++V
Sbjct: 1185 WVTDLCFSPDGKMLISAGG--YIKWWNVV 1211
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLAT 366
+ + A F+E G + C L V++ + +L+ + H +V C A+S D + +AT
Sbjct: 622 DAVYHACFSEDGQ-RIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIAT 680
Query: 367 GADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF 426
+ D KVK+W +G T+ EH+ V HF ++H LL A+
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT---------------- 724
Query: 427 RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS 486
G+ D F + +W + + + GH V+ FS
Sbjct: 725 -------------------------GSSDCF-LKLWDLNQKECRNTMFGHTNSVNHCRFS 758
Query: 487 PTNATLASSSWDKTVRLWN 505
P + LAS S D T++LW+
Sbjct: 759 PDDKLLASCSADGTLKLWD 777
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 99/487 (20%), Positives = 169/487 (34%), Gaps = 82/487 (16%)
Query: 61 SPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKY--PVNAILFSPNGKYIAVGTGKL-VQ 117
S DG ++ +N + ++H +L + + + FSP V + V+
Sbjct: 813 SADGARIMVAAKN-KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVE 871
Query: 118 IWRSPGFKKEVFAFELIRTLADCNDK---VTALNWSPDSNYLLVGSKDLAVRLFYVKEKL 174
+W + K +ADC V + +SPD + L S D +RL+ K+
Sbjct: 872 LWNTDSRSK----------VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVC 921
Query: 175 KGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETM 234
K N +L D V + N + +A D +G G+ID
Sbjct: 922 K----NSAVMLKQEVDVVF-----------QENEVMVLAVDHIRRLQLINGRTGQIDYLT 966
Query: 235 EDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP 294
E ++V+ C L + G NG + ++
Sbjct: 967 E-----------------------------AQVSCCCLSPHLQYIAFGDENGAIEILELV 997
Query: 295 DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC 354
+ ++ + F L+ + ++ VW W+ + I +GH V
Sbjct: 998 NNRIFQSRFQHKKTVWHIQFTADEKTLI-SSSDDAEIQVWNWQLDKCIF-LRGHQETVKD 1055
Query: 355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT 414
+S+LL+ D VKVW + +G F H V + + S S D T
Sbjct: 1056 FRLLKNSRLLSWSFD-GTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKT 1114
Query: 415 VRAWD---LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD 471
+ W L R S+ S + A D+ EI +W++ G LL
Sbjct: 1115 AKIWSFDLLLPLHELRGHNGCVRCSAFSVDS-----TLLATGDDNGEIRIWNVSNGELLH 1169
Query: 472 IL--------SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523
+ + H G V L FSP L S+ ++ WNV G+ S + + ++
Sbjct: 1170 LCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNGTNLK 1227
Query: 524 TVVYRPD 530
+ PD
Sbjct: 1228 KIHVSPD 1234
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG 531
++ H V+ FS +AS DKT++++ G+ +E H +VL + D
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 532 RQLACSTLDGQIHFWDPLNGELMYT 556
R +A ++D ++ W+ + GEL++T
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHT 700
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 23/243 (9%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
GH+ + +SP + L V++W S H + V + F + S
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466
L++S D T+R W+ T + ++ Q +V+ E+ V ++
Sbjct: 904 LTSSDDQTIRLWE-----------TKKVCKNSAVMLKQEVDVV----FQENEVMVLAVDH 948
Query: 467 GRLLDILSGHEGPVHGLV--------FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPH 518
R L +++G G + L SP +A + + + + + F H
Sbjct: 949 IRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQH 1008
Query: 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS 578
V + + D + L S+ D +I W+ + ++ + + RL+ + R + S
Sbjct: 1009 KKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWS 1068
Query: 579 SSG 581
G
Sbjct: 1069 FDG 1071
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 83/232 (35%), Gaps = 58/232 (25%)
Query: 442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501
S+ + G + ++F +TG L + HE V FS + +A+ S DK V
Sbjct: 630 SEDGQRIASCGADKTLQVF--KAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 502 RLWNVFEGK----------------------------GSVES----------------FP 517
++WN G+ GS + F
Sbjct: 688 KIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFG 747
Query: 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAAN 577
HT+ V + PD + LA + DG + WD + R+ I+ + +
Sbjct: 748 HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSA------NERKSINVKQFFLNLEDPQE 801
Query: 578 SSS--GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSL 627
KC + +SADG+ I+ +K I ++D+ LL H+ ++
Sbjct: 802 DMEVIVKCCS---WSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTI 849
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 9/201 (4%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
GH V CL Y D +++ TG+ D+ V+VW V++G T H AV LH NN +
Sbjct: 171 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMM 226
Query: 407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466
++ S D ++ WD+ + + D + I + + D I VW+ T
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR-TIKVWNTST 285
Query: 467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVV 526
+ L+GH+ + L + + + S S D T+RLW++ G+ H+ L
Sbjct: 286 CEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRC 341
Query: 527 YRPDGRQLACSTLDGQIHFWD 547
R D +++ DG+I WD
Sbjct: 342 IRFDNKRIVSGAYDGKIKVWD 362
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 98/234 (41%), Gaps = 15/234 (6%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
V CL Y D Q + +G DN +K+W ++ C T HT +V L + + +++ S
Sbjct: 136 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSS 191
Query: 412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG---R 468
D TVR WD+ T + L + V C+ I VW M +
Sbjct: 192 DSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNNGMMVTCS---KDRSIAVWDMASPTDIT 247
Query: 469 LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR 528
L +L GH V+ + F + + S+S D+T+++WN + H + + YR
Sbjct: 248 LRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 529 PDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK 582
R + + D I WD G + +EG ++ ++R + + GK
Sbjct: 306 --DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 357
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
VW + ++ GH + CL Y +L+ +G+ DN +++W + G C H
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDL 420
V + F +N ++S + DG ++ WDL
Sbjct: 338 LVRCIRF--DNKRIVSGAYDGKIKVWDL 363
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 105/239 (43%), Gaps = 19/239 (7%)
Query: 325 CAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSGF 382
C+ ++ +W+ + + H VNC ++ S LLATG++D +K+W ++
Sbjct: 675 CSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Query: 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS 442
C T HTN+V F ++ L S S DGT+R WD+ R N R S
Sbjct: 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV-RSANERKSINVKRFFLSSEDP 793
Query: 443 DQSGEVI---CAGTLDSFEIFVWSMK---------TGRLLDILSGHEGPVHGLVFSPTN- 489
+ EVI C+ + D +I V + +G L +I +GH + FSP +
Sbjct: 794 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH 853
Query: 490 -ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547
A +A S + V LWN+ + H V V++ PDG ++ D I W+
Sbjct: 854 LAVIALSQY--CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 76/320 (23%), Positives = 134/320 (41%), Gaps = 62/320 (19%)
Query: 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLAT 366
E + AV N G L+ G K GQ+ Y+ + Q V+C SP + +A
Sbjct: 934 ETMVLAVDNIRGLQLIAG--KTGQI--------DYLPEAQ-----VSCCCLSPHLEYVAF 978
Query: 367 GADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL------ 420
G +D +K+ + + F + H AV + F A+ +L+S+S D ++ W+
Sbjct: 979 GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV 1038
Query: 421 ---FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
+ F + +S + D GT + VW++ TGR+ + H+
Sbjct: 1039 FLQAHQETVKDFRLLQDSRLLSWSFD--------GT-----VKVWNVITGRIERDFTCHQ 1085
Query: 478 GPVHGLVFSPTNATLASSSWDKTVRLWN------VFEGKGSVESFPHTHDVLTVVYRPDG 531
G V S +S+S DKT ++W+ + E KG H V + DG
Sbjct: 1086 GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG------HNGCVRCSAFSLDG 1139
Query: 532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA 591
LA +G+I W+ +G+L++ S + + +A + G T +C+S
Sbjct: 1140 ILLATGDDNGEIRIWNVSDGQLLH--------SCAPISVEEGTATH---GGWVTDVCFSP 1188
Query: 592 DGSYILAGGSSKYICMYDVA 611
D +++ G Y+ ++VA
Sbjct: 1189 DSKTLVSAGG--YLKWWNVA 1206
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%)
Query: 357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416
+S D Q +A+ D ++V+ +G + H + V F +++ + + S D V+
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682
Query: 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH 476
WD + T+ S + +++S ++ A + F + +W + + + GH
Sbjct: 683 IWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742
Query: 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
V+ FSP + LAS S D T+RLW+V
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 121/560 (21%), Positives = 211/560 (37%), Gaps = 104/560 (18%)
Query: 101 FSPNGKYIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLV- 158
FS + YIA + K V+IW S K L+ T + +++V +++ SN+LL+
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGK-------LVHTYDEHSEQVNCCHFTNKSNHLLLA 717
Query: 159 -GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY 217
GS D ++L+ + +K + GH +SV C FS D + + + + D
Sbjct: 718 TGSNDFFLKLWDLNQK------ECRNTMFGHTNSVNHCRFSPDDEL-----LASCSADGT 766
Query: 218 MFSWGF-SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL 276
+ W S N+ K VK++ L +D V C +
Sbjct: 767 LRLWDVRSANERK----------------SINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 277 DMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335
D ++V N V + D LL+ I +T + + + L Q V
Sbjct: 811 DKIIVAAKNKVL----LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL 866
Query: 336 WRSESY--ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV-----SSGFCF---- 384
W +S + +GH V+ + +SPD T +DD ++VW +S
Sbjct: 867 WNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926
Query: 385 -VTFTEHTNAVTA------LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF-------- 429
V F E+ V A L +A + + V L + + F
Sbjct: 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK 986
Query: 430 --TTPSSRQFVSLASDQS----------GEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
P++R F S + G+ + + + DS I VW+ +TG + L H+
Sbjct: 987 IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSV-IQVWNWQTGDYV-FLQAHQ 1044
Query: 478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS 537
V ++ L S S+D TV++WNV G+ + H VL+ D + + +
Sbjct: 1045 ETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597
+ D W + +L+ + + +G C +S DG +
Sbjct: 1104 SADKTAKIW---SFDLLSPLHELKGHNG-----------------CVRCSAFSLDGILLA 1143
Query: 598 AGGSSKYICMYDVADQVLLR 617
G + I +++V+D LL
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLH 1163
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 101/251 (40%), Gaps = 34/251 (13%)
Query: 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI 449
HT+AV F + + S D T++ F + + + + + + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQ-----------VFKAETGEKLLDIKAHEDEVLC 662
Query: 450 CA-GTLDSF--------EIFVWSMKTGRLLDILSGHEGPVHGLVFS--PTNATLASSSWD 498
CA + DS+ ++ +W TG+L+ H V+ F+ + LA+ S D
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSND 722
Query: 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
++LW++ + + F HT+ V + PD LA + DG + WD + +
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD------VRSAN 776
Query: 559 GRRDISGGRLMTDRRSAANSSS--GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616
R+ I+ R KC + +SADG I+ +K + ++D+ LL
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADGDKIIVAAKNK-VLLFDIHTSGLL 832
Query: 617 RRFQITHNLSL 627
H+ ++
Sbjct: 833 AEIHTGHHSTI 843
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-----VTF 387
+W + S + + +GH V C A+S D LLATG D+ ++++W VS G ++
Sbjct: 1111 IWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISV 1170
Query: 388 TE----HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT 431
E H VT + F ++ +L+SA G ++ W++ + +TF T
Sbjct: 1171 EEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT 1216
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%)
Query: 472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG 531
++ H V+ FS +AS DKT++++ G+ ++ H +VL + D
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 532 RQLACSTLDGQIHFWDPLNGELMYTIE 558
+A + D ++ WD G+L++T +
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYD 696
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 43/305 (14%)
Query: 346 QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-----GFCFVTFTEHTNAVTALHF 399
+GH V LA S LL + + D + W ++ G +F H++ V
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
A+ LSAS D T+R WD+ ++ F S S+ D+ I +G+ D I
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVXSVDIDKKASXIISGSRDK-TI 131
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPT------NATLASSSWDKTVRLWNVFEGKGSV 513
VW++K G+ L L GH V + P + T+ S+ DK V+ WN+ + +
Sbjct: 132 KVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEA 190
Query: 514 ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRR 573
+ H ++ T+ PDG +A + DG+I W+ + YT+ + ++ +R
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRY 250
Query: 574 --SAANSSSGKCFT--------------------------TLCYSADGSYILAGGSSKYI 605
+AA ++ K F+ +L +SADG + AG + I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 606 CMYDV 610
++ V
Sbjct: 311 RVWQV 315
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 108/281 (38%), Gaps = 49/281 (17%)
Query: 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512
TL S+++ K G + GH V + A S+SWDKT+RLW+V G+
Sbjct: 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 100
Query: 513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD-ISGGRLMTD 571
H DV +V + + D I W + G+ + T+ G D +S R++ +
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVI 631
++ +S + I++ G+ K + ++ L +FQI
Sbjct: 160 EKADDDSVT---------------IISAGNDKXVKAWN------LNQFQIE--------A 190
Query: 632 DFL----NSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKC 687
DF+ N +T + LI D E + K Y L +
Sbjct: 191 DFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--------QDEVFS 242
Query: 688 LKIAPTGRNFVAATTEGVLVYSIDESFIFDPTDLDIDVTPE 728
L +P AAT G+ V+S+D ++ D D+ PE
Sbjct: 243 LAFSPNRYWLAAATATGIKVFSLDPQYLVD------DLRPE 277
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG 111
+SNI + SPDGT + + ++ NL + + + V ++ FSPN ++A
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAA 255
Query: 112 TGKLVQIWR-SPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170
T ++++ P + + E +L WS D L G D +R++ V
Sbjct: 256 TATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 137/310 (44%), Gaps = 37/310 (11%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
+ CL + + + +G+DDN +KVW+ +G C T HT V + N ++S S
Sbjct: 122 ITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGST 177
Query: 412 DGTVRAWDLFRYRNFRT-FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL 470
D T++ W+ T + S+ + + L + + +G+ D+ + VW ++TG+ L
Sbjct: 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR----VVSGSRDA-TLRVWDIETGQCL 232
Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRP 529
+L GH V + + + S ++D V++W+ E + + + HT+ V ++ +
Sbjct: 233 HVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQF-- 287
Query: 530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS---------- 579
DG + +LD I WD G ++T+ G + ++ G + D + ++
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347
Query: 580 SGKCFTTL-----------CYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLD 628
+G+C TL C + ++++ + ++D+ +R +
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407
Query: 629 GVIDFLNSKN 638
GV+ + + N
Sbjct: 408 GVVWRIRASN 417
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNA 393
+E ++ GH +V L ++PD + LA+G +DN V VW + G TFT+H A
Sbjct: 230 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 289
Query: 394 VTALHFMANNHSLLS---ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS-LASDQSGEVI 449
V A+ + ++L+ + D +R W++ S Q S L S E+I
Sbjct: 290 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI 347
Query: 450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
++ +W T + L GH V L SP AT+AS++ D+T+RLW FE
Sbjct: 348 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 116/286 (40%), Gaps = 16/286 (5%)
Query: 271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKL 328
D+ G +++ V N V+ L+ + LL + + E I++ + + GN+L G +
Sbjct: 123 DWSSG-NVLAVALDNSVY-LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS- 179
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV-TF 387
++ +W+ + + + H V L++ +S +L++G+ + V V T
Sbjct: 180 AEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR----YRNFRTFTT-PSSRQFVSLAS 442
+ H+ V L + + L S D V W + +TFT + + V+
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW--DKT 500
QS + G I +W++ +G L + H V +++SP L S
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQ 356
Query: 501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
+ +W E HT VL++ PDG +A + D + W
Sbjct: 357 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 368 ADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN 425
A DN V +W+ SSG + + ++++ ++ + L + V+ WD+ + +
Sbjct: 133 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 192
Query: 426 FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILSGHEGPVHGLV 484
R T+ S+R + S I + S I ++ + LSGH V GL
Sbjct: 193 LRNMTSHSAR----VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 248
Query: 485 FSPTNATLASSSWDKTVRLWNVFEGKGS---VESF-PHTHDVLTVVYRPDGRQLACS--- 537
++P LAS D V +W G+G +++F H V V + P + +
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDI 563
T D I W+ +G + ++ +
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQV 334
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK 582
L +V G LA + LD ++ W +G+++ ++ + G+
Sbjct: 119 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP------------------GE 159
Query: 583 CFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF 619
+++ + +G+Y+ G SS + ++DV Q LR
Sbjct: 160 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 196
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNA 393
+E ++ GH +V L ++PD + LA+G +DN V VW + G TFT+H A
Sbjct: 219 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 278
Query: 394 VTALHFMANNHSLLS---ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS-LASDQSGEVI 449
V A+ + ++L+ + D +R W++ S Q S L S E+I
Sbjct: 279 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI 336
Query: 450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
++ +W T + L GH V L SP AT+AS++ D+T+RLW FE
Sbjct: 337 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 368 ADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN 425
A DN V +W+ SSG + + ++++ ++ + L + V+ WD+ + +
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181
Query: 426 FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILSGHEGPVHGLV 484
R T+ S+R + S I + S I ++ + LSGH V GL
Sbjct: 182 LRNMTSHSAR----VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237
Query: 485 FSPTNATLASSSWDKTVRLWNVFEGKGS---VESF-PHTHDVLTVVYRPDGRQLACS--- 537
++P LAS D V +W G+G +++F H V V + P + +
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDI 563
T D I W+ +G + ++ +
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQV 323
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 124/299 (41%), Gaps = 52/299 (17%)
Query: 86 VLHRVRFKYP---VNAILFSPNGKYIAVGTGKL-VQIWRSPGFKKEVFAFELIRTLADCN 141
+L ++ + P ++++ + G Y+AVGT VQ+W +V + +R + +
Sbjct: 137 ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW-------DVQQQKRLRNMTSHS 189
Query: 142 DKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDK 201
+V +L+W +S L GS+ + V+ + T L GH V G ++ D
Sbjct: 190 ARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-----LSGHSQEVCGLRWAPDG 242
Query: 202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS 261
+ ++ S GND ++ P +PG G + F+
Sbjct: 243 R--------------HLAS---GGNDNLVNVW-----PSAPGEG-------GWVPLQTFT 273
Query: 262 QAPSKVTA---CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG 318
Q V A C + + G S+ ++ + C+ + + ++ + +++
Sbjct: 274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY 332
Query: 319 NWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
L+ G QL++W++ + + + + +GH V L SPD +A+ A D +++W
Sbjct: 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK 582
L +V G LA + LD ++ W +G+++ ++ + G+
Sbjct: 108 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP------------------GE 148
Query: 583 CFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF 619
+++ + +G+Y+ G SS + ++DV Q LR
Sbjct: 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 132/302 (43%), Gaps = 31/302 (10%)
Query: 319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV 378
N+++ G A + V++ ++ ++L+ GH V L Y+ +L +G+ D V+VW +
Sbjct: 133 NYVITG-ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190
Query: 379 SSGFCFVTFTEHTNAVTALHFM--ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ 436
G C F H + V L + N +++ S D T+ W L P
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-----------PKE-- 237
Query: 437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS 496
S D E D +F + + +L GH V + S + S S
Sbjct: 238 --SSVPDHGEE------HDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS 287
Query: 497 WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYT 556
+D T+ +W+V + K HT + + +Y + ++ +++D I WD NGELMYT
Sbjct: 288 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 347
Query: 557 IEGRRDISGGRLMTDR--RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQV 614
++G + G ++D+ SAA S + + YS SY S+ I + V+D +
Sbjct: 348 LQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSDNI 405
Query: 615 LL 616
L+
Sbjct: 406 LV 407
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNA 393
+E ++ GH +V L ++PD + LA+G +DN V VW + G TFT+H A
Sbjct: 139 AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA 198
Query: 394 VTALHFMANNHSLLS---ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS-LASDQSGEVI 449
V A+ + ++L+ + D +R W++ S Q S L S E+I
Sbjct: 199 VKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELI 256
Query: 450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
++ +W T + L GH V L SP AT+AS++ D+T+RLW FE
Sbjct: 257 SGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 14/206 (6%)
Query: 368 ADDNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRN 425
A DN V +W+ SSG + + ++++ ++ + L + V+ WD+ + +
Sbjct: 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101
Query: 426 FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLV 484
R T+ S+R + S I + S I ++ + LSGH V GL
Sbjct: 102 LRNMTSHSAR----VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 157
Query: 485 FSPTNATLASSSWDKTVRLWNVFEGKGS---VESF-PHTHDVLTVVYRPDGRQLACS--- 537
++P LAS D V +W G+G +++F H V V + P + +
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 538 TLDGQIHFWDPLNGELMYTIEGRRDI 563
T D I W+ +G + ++ +
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQV 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 124/299 (41%), Gaps = 52/299 (17%)
Query: 86 VLHRVRFKYP---VNAILFSPNGKYIAVGTGKL-VQIWRSPGFKKEVFAFELIRTLADCN 141
+L ++ + P ++++ + G Y+AVGT VQ+W +V + +R + +
Sbjct: 57 ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW-------DVQQQKRLRNMTSHS 109
Query: 142 DKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDK 201
+V +L+W +S L GS+ + V+ + T L GH V G ++ D
Sbjct: 110 ARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-----LSGHSQEVCGLRWAPDG 162
Query: 202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS 261
+ ++ S GND ++ P +PG G + F+
Sbjct: 163 R--------------HLAS---GGNDNLVNVW-----PSAPGEG-------GWVPLQTFT 193
Query: 262 QAPSKVTA---CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG 318
Q V A C + + G S+ ++ + C+ + + ++ + +++
Sbjct: 194 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHY 252
Query: 319 NWLVFGCA-KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
L+ G QL++W++ + + + + +GH V L SPD +A+ A D +++W
Sbjct: 253 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
K FS +V D+H V+ +G L+ V + + ++ + F
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
NW++ G ++ V+ + + ++ + H + +A P + +G+DD VK+W
Sbjct: 66 RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
+ + TF H + V + F + S S LD TV+ W L + T TT
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
R +V + + D I +W +T + L GH V VF PT +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 347 GHYFDVNCLAYSP--DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH 404
G VN + Y P D + T +DD +K+W + C T H + V+ F
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE--VICAGTLDSFEIF 460
++S S DGT++ W+ Y+ +T R + +A+ +G I +G + F +
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPTGRKNYIASGFDNGFTVL 298
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 53/239 (22%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
G++ +W + ++ + Q V + + G+DD +++V+ ++G V F
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448
H + + ++ +LS S D TV+ W+ + N + A +Q+ E
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WEN-------------NWALEQTFE- 137
Query: 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVF 507
GHE V + F+P + +T AS D+TV++W++
Sbjct: 138 --------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 508 EGKGSVESFPHT----HDVLTVVYR--PDGRQLACSTLDGQIHFWDPLNGELMYTIEGR 560
+ S +F T V V Y PD + ++ D I WD + T+EG
Sbjct: 172 Q---STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 91/275 (33%)
Query: 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK--------------GIHT 179
+R++ V A + N+++VGS D +R+F K +H
Sbjct: 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP 107
Query: 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE- 238
KP++L G D V +++W N+ +++T E E
Sbjct: 108 TKPYVLSGSDDLTVK-----------------------LWNWE---NNWALEQTFEGHEH 141
Query: 239 --------PPSP-----GTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN 285
P P G +R VK W L + P+ RG++ V
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLTTGQERGVNYV------ 190
Query: 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345
Y +PD ++++ S + + +W+++++S +
Sbjct: 191 ---DYYPLPD--KPYMITASDDL---------------------TIKIWDYQTKSCVATL 224
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380
+GH +V+ + P ++ +G++D +K+W S+
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
K FS +V D+H V+ +G L+ V + + ++ + F
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
NW++ G ++ V+ + + ++ + H + +A P + +G+DD VK+W
Sbjct: 66 RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
+ + TF H + V + F + S S LD TV+ W L + T TT
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
R +V + + D I +W +T + L GH V VF PT +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 347 GHYFDVNCLAYSP--DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH 404
G VN + Y P D + T +DD +K+W + C T H + V+ F
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE--VICAGTLDSFEIF 460
++S S DGT++ W+ Y+ +T R + +A+ +G I +G + F +
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPTGRKNYIASGFDNGFTVL 298
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 53/239 (22%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
G++ +W + ++ + Q V + + G+DD +++V+ ++G V F
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448
H + + ++ +LS S D TV+ W+ + N + A +Q+ E
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WEN-------------NWALEQTFE- 137
Query: 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVF 507
GHE V + F+P + +T AS D+TV++W++
Sbjct: 138 --------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 508 EGKGSVESFPHT----HDVLTVVYR--PDGRQLACSTLDGQIHFWDPLNGELMYTIEGR 560
+ S +F T V V Y PD + ++ D I WD + T+EG
Sbjct: 172 Q---STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 91/275 (33%)
Query: 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK--------------GIHT 179
+R++ V A + N+++VGS D +R+F K +H
Sbjct: 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP 107
Query: 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE- 238
KP++L G D V +++W N+ +++T E E
Sbjct: 108 TKPYVLSGSDDLTVK-----------------------LWNWE---NNWALEQTFEGHEH 141
Query: 239 --------PPSP-----GTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN 285
P P G +R VK W L + P+ RG++ V
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLTTGQERGVNYV------ 190
Query: 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345
Y +PD ++++ S + + +W+++++S +
Sbjct: 191 ---DYYPLPD--KPYMITASDDL---------------------TIKIWDYQTKSCVATL 224
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380
+GH +V+ + P ++ +G++D +K+W S+
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
K FS +V D+H V+ +G L+ V + + ++ + F
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
NW++ G ++ V+ + + ++ + H + +A P + +G+DD VK+W
Sbjct: 66 RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
+ + TF H + V + F + S S LD TV+ W L + T TT
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
R +V + + D I +W +T + L GH V VF PT +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 80/195 (41%), Gaps = 26/195 (13%)
Query: 352 VNCLAYSP--DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409
VN + Y P D + T +DD +K+W + C T H + V+ F ++S
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE--VICAGTLDSFEIFVWSMKTG 467
S DGT++ W+ Y+ +T R + +A+ +G I +G + F + + G
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPTGRKNYIASGFDNGFTV----LSLG 301
Query: 468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK----------GSVESFP 517
LS PV LV+S AS + +R E GSV+ FP
Sbjct: 302 NDEPTLS--LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFP 359
Query: 518 HTHDVLTVVYRPDGR 532
++ + P+GR
Sbjct: 360 Q-----SLAHSPNGR 369
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 50/275 (18%), Positives = 100/275 (36%), Gaps = 91/275 (33%)
Query: 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK--------------GIHT 179
+R++ V A + N+++VGS D +R+F K +H
Sbjct: 48 VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP 107
Query: 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE- 238
KP++L G D V +++W N+ +++T E E
Sbjct: 108 TKPYVLSGSDDLTVK-----------------------LWNWE---NNWALEQTFEGHEH 141
Query: 239 --------PPSP-----GTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN 285
P P G +R VK W L + P+ RG++ V
Sbjct: 142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLTTGQERGVNYV------ 190
Query: 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345
Y +PD ++++ S + + +W+++++S +
Sbjct: 191 ---DYYPLPD--KPYMITASDDL---------------------TIKIWDYQTKSCVATL 224
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380
+GH +V+ + P ++ +G++D +K+W S+
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 53/239 (22%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
G++ +W + ++ + Q V + + G+DD +++V+ ++G V F
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448
H + + ++ +LS S D TV+ W+ + N + A +Q+ E
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WEN-------------NWALEQTFE- 137
Query: 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVF 507
GHE V + F+P + +T AS D+TV++W++
Sbjct: 138 --------------------------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 508 EGKGSVESFPHT----HDVLTVVYR--PDGRQLACSTLDGQIHFWDPLNGELMYTIEGR 560
+ S +F T V V Y PD + ++ D I WD + T+EG
Sbjct: 172 Q---STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 123/288 (42%), Gaps = 30/288 (10%)
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
V++ ++ ++L+ GH V L Y+ +L +G+ D V+VW + G C F H +
Sbjct: 146 VYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNS 204
Query: 393 AVTALHFM--ANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450
V L + N +++ S D T+ W L P S D E
Sbjct: 205 TVRCLDIVEYKNIKYIVTGSRDNTLHVWKL-----------PKE----SSVPDHGEE--- 246
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK 510
D +F + + +L GH V + S + S S+D T+ +W+V + K
Sbjct: 247 ---HDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXK 301
Query: 511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMT 570
HT + + +Y + ++ ++ D I WD NGEL YT++G + G ++
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS 361
Query: 571 DR--RSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616
D+ SAA S + + YS SY S+ I + V+D +L+
Sbjct: 362 DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSDNILV 407
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 126/319 (39%), Gaps = 43/319 (13%)
Query: 185 LLGHRDSVVGCF-----FSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKI-DETMEDSE 238
L GH SV+ C + + DK R+Y ++ SG+DG +
Sbjct: 117 LRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQ--LSGHDGGVWALKYAHGG 174
Query: 239 PPSPGTPERRVKKWGLLR---KDDFSQAPSKVTACDY--HRGLDMVVVGFSNGVFGLYQM 293
G+ +R V+ W + + F S V D ++ + +V G + ++++
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 294 P------------DFVCI--------HLLSISR-EKITTAVFNELGNWLVFGCAKLGQLL 332
P D+ + + + + R + + GN +V G L+
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYD-NTLI 293
Query: 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392
VW+ + GH + Y + + + + D +++W + +G T HT
Sbjct: 294 VWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTA 353
Query: 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRY-RNFRTFTTPSSRQFVSLASDQSGEVICA 451
V L ++ L+SA+ DG++R WD Y R F T S SD ++ +
Sbjct: 354 LVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN---ILVS 408
Query: 452 GTLDSFEIFVWSMKTGRLL 470
G+ + F I+ ++++G+L+
Sbjct: 409 GSENQFNIY--NLRSGKLV 425
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 103/253 (40%), Gaps = 6/253 (2%)
Query: 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE 316
K FS +V D+H V+ +G ++ V + + ++ + F
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 317 LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376
NW++ G ++ V+ + + ++ + H + +A P + +G+DD VK+W
Sbjct: 66 RKNWIIVGSDDF-RIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 377 TVSSGFCF-VTFTEHTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSS 434
+ + TF H + V + F + S S LD TV+ W L + T TT
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 435 R--QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492
R +V + + D I +W +T + L GH V VF PT +
Sbjct: 185 RGVNYVDYYPLPDKPYMITAS-DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPII 243
Query: 493 ASSSWDKTVRLWN 505
S S D T+++WN
Sbjct: 244 ISGSEDGTLKIWN 256
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 26/200 (13%)
Query: 347 GHYFDVNCLAYSP--DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH 404
G VN + Y P D + T +DD +K+W + C T H + V+ F
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE--VICAGTLDSFEIFVW 462
++S S DGT++ W+ Y+ +T R + +A+ +G I +G + F +
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWC-IATHPTGRKNYIASGFDNGFTV--- 297
Query: 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK----------GS 512
+ G LS PV LV+S AS + +R E GS
Sbjct: 298 -LSLGNDEPTLS--LDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354
Query: 513 VESFPHTHDVLTVVYRPDGR 532
V+ FP ++ + P+GR
Sbjct: 355 VDVFPQ-----SLAHSPNGR 369
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 92/239 (38%), Gaps = 53/239 (22%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
G++ +W + ++ + Q V + + G+DD +++V+ ++G V F
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94
Query: 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448
H + + ++ +LS S D TV+ W+ + N
Sbjct: 95 AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN---WEN----------------------- 128
Query: 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVF 507
W+++ GHE V + F+P + +T AS D+TV++W++
Sbjct: 129 ------------NWALE-----QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 508 EGKGSVESFPHT----HDVLTVVYR--PDGRQLACSTLDGQIHFWDPLNGELMYTIEGR 560
+ S +F T V V Y PD + ++ D I WD + T+EG
Sbjct: 172 Q---STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/285 (18%), Positives = 105/285 (36%), Gaps = 94/285 (32%)
Query: 127 EVFAFEL---IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK-------- 175
E++ +E +R++ V A + N+++VGS D +R+F K
Sbjct: 38 EIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP 97
Query: 176 ------GIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGK 229
+H KP++L G D V +++W N+
Sbjct: 98 DYIRSIAVHPTKPYVLSGSDDLTVK-----------------------LWNWE---NNWA 131
Query: 230 IDETMEDSE---------PPSP-----GTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG 275
+++T E E P P G +R VK W L + P+ RG
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-----STPNFTLTTGQERG 186
Query: 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335
++ V Y +PD ++++ S + + +W+
Sbjct: 187 VNYV---------DYYPLPD--KPYMITASDDLT---------------------IKIWD 214
Query: 336 WRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380
++++S + +GH +V+ + P ++ +G++D +K+W S+
Sbjct: 215 YQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 107/246 (43%), Gaps = 31/246 (12%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411
V CLA+S D + TG ++ ++++W +G H + ++ + + ++S +
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV 169
Query: 412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL---------DSF----- 457
+ W++ + F + A + SG+ G+L D F
Sbjct: 170 ENVTILWNVISGTVMQHFELKETGGSSINAENHSGD----GSLGVDVEWVDDDKFVIPGP 225
Query: 458 --EIFVWSMK----TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG 511
IFV+ + TG+L+ GH GP+ L F+ TN L S+S D T+R+W+ G
Sbjct: 226 KGAIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS 281
Query: 512 SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD-PLNGELMYTIEGRRDISGGRLMT 570
+ H+ +++ + D + ++CS +DG + W N L +I I GR+
Sbjct: 282 QNCFYGHSQSIVSASWVGDDKVISCS-MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340
Query: 571 DRRSAA 576
D + A
Sbjct: 341 DGQKYA 346
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388
G + V++ ++ K GH+ ++ L ++ ++LL + +DD +++W +G F
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420
H+ ++ + ++ ++ ++S S+DG+VR W L
Sbjct: 287 GHSQSIVSASWVGDD-KVISCSMDGSVRLWSL 317
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 36/240 (15%)
Query: 381 GFCFVTFTEHTNAVTALHF----MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS--- 433
G F H +A+ ++ + N+ ++++ SLD V+ W ++R+ R S
Sbjct: 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW---KWRDERLDLQWSLEG 78
Query: 434 -SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHG--LVFSPTNA 490
VS+ + + + +LD+ I +W ++ G+ I S GPV L FSP +
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDA-HIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQ 135
Query: 491 TLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550
LA+ + V ++ V GK +L++ Y PDG+ LA +DG I+ +D
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT 195
Query: 551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610
G+L++T+EG +L +S D ++ YI +YDV
Sbjct: 196 GKLLHTLEGH--------------------AMPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 444 QSGEVICAGTLDSFEIFVWSMKTGRLLDI---LSGHEGPVHGLVFSPTNATLASSSWDKT 500
++ E + G+LD + VW + RL D+ L GH+ V + S T ASSS D
Sbjct: 46 ENSETVVTGSLDDL-VKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103
Query: 501 VRLWNVFEGK--GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558
+RLW++ GK S+++ P D T+ + PD + LA T G+++ + +G+ Y+++
Sbjct: 104 IRLWDLENGKQIKSIDAGP--VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRR 618
R GK ++ YS DG Y+ +G I ++D+A LL
Sbjct: 162 TR--------------------GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHT 201
Query: 619 FQ 620
+
Sbjct: 202 LE 203
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 2/197 (1%)
Query: 351 DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS 410
D LA+SPDSQ LATG KV ++ V SG + + ++ + + L S +
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183
Query: 411 LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL 470
+DG + +D+ + T + SL +++ + D + I ++ ++ L
Sbjct: 184 IDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLA 241
Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530
LSGH V + F P + SSS DK+V++W+V F H V V Y +
Sbjct: 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN 301
Query: 531 GRQLACSTLDGQIHFWD 547
G ++ D +IH +D
Sbjct: 302 GSKIVSVGDDQEIHIYD 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 89/203 (43%), Gaps = 4/203 (1%)
Query: 360 DSQLLATGADDNKVKVWTVSSGFCFVTFT--EHTNAVTALHFMANNHSLLSASLDGTVRA 417
+S+ + TG+ D+ VKVW + ++ H V ++ S+SLD +R
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477
WDL + ++ + +LA + + GT ++ ++ +++G+ L
Sbjct: 107 WDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGT-HVGKVNIFGVESGKKEYSLDTRG 164
Query: 478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS 537
+ + +SP LAS + D + ++++ GK H + ++ + PD + L +
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTA 224
Query: 538 TLDGQIHFWDPLNGELMYTIEGR 560
+ DG I +D + L T+ G
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGH 247
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
+GH + L +SPDSQLL T +DD +K++ V T + H + V + F ++
Sbjct: 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262
Query: 406 LLSASLDGTVRAWDLFRYRNFRTF 429
+S+S D +V+ WD+ TF
Sbjct: 263 FVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 76/176 (43%), Gaps = 17/176 (9%)
Query: 28 SPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVL 87
S + + + DL K + + +A SPD +L T + + +
Sbjct: 98 SSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 88 HRV--RFKYPVNAILFSPNGKYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKV 144
+ + R K+ + +I +SP+GKY+A G ++ I+ ++ +L+ TL +
Sbjct: 158 YSLDTRGKF-ILSIAYSPDGKYLASGAIDGIINIF-------DIATGKLLHTLEGHAMPI 209
Query: 145 TALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD 200
+L +SPDS L+ S D ++++ V+ H N L GH V+ F D
Sbjct: 210 RSLTFSPDSQLLVTASDDGYIKIYDVQ------HANLAGTLSGHASWVLNVAFCPD 259
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 138/305 (45%), Gaps = 35/305 (11%)
Query: 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF 350
+ D VC L K+ + + NW+V ++ G+L+VW + + Q+ H
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIV-SASQDGRLIVW-----NALTSQKTHAI 104
Query: 351 DVNC-----LAYSPDSQLLATGADDNKVKVWTVSS-----GFCFVT--FTEHTNAVTALH 398
++C A++P+ Q +A G D+ ++ +SS G V+ T H ++
Sbjct: 105 KLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164
Query: 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTT--PS--SRQFVSLASDQ-SGEVICAG 452
++ + + L++ S D T WD+ + F + PS + +SL+ + + + +G
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 453 TLDSFEIFVWSMK-TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG 511
+ D+ + +W ++ T R + GHEG ++ + F P + S D T RL+++ G
Sbjct: 225 SCDT-TVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH- 282
Query: 512 SVESF---PHTHD-----VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563
++ + P +D V +V + GR L +G + WD L E++ + ++
Sbjct: 283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNS 342
Query: 564 SGGRL 568
GR+
Sbjct: 343 HEGRI 347
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 347 GHYFDVNCLAY-SPDSQLLATGADDNKVKVWTVS-SGFCFVTFTEHTNAVTALHFMANNH 404
GH DV L+ S ++ + +G+ D V++W + + T+ H + ++ F +
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ------FVSLASDQSGEVICAGTLDSFE 458
+ S DGT R +D+ + + R S+A SG ++ AG + +
Sbjct: 263 RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-YSNGD 321
Query: 459 IFVWSMKTGRLL----DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG 509
+VW ++ + + HEG + L S + L + SWDK +++W F G
Sbjct: 322 CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW-AFSG 375
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/353 (20%), Positives = 129/353 (36%), Gaps = 54/353 (15%)
Query: 135 RTLADCNDKVTALNWSPDSNYLLVGSKD--LAVRLFYVKEKLKGIHTNKPFLLLGHRDSV 192
RTL + KV +L+W+P+ N+++ S+D L V +K I + P+ V
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW--------V 111
Query: 193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGN-DGKIDETMEDSEPPSPGTPERRVKK 251
+ C F+ + ++ + + C +F+ + DG + P RV
Sbjct: 112 MECAFAPNGQSVACGGLDSA---CSIFNLSSQADRDGNM--------------PVSRVLT 154
Query: 252 WGLLRKDDFSQAPSKVTACDYHRG-----LDMVVVGFSNGVFGLYQMPDFVCIHLLSISR 306
P + T G L V G +FG + P +LS+S
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFG-SEFPSGHTADVLSLSI 213
Query: 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLA 365
+ +F + C +L W+ R S ++ GH D+N + + PD Q
Sbjct: 214 NSLNANMF------ISGSCDTTVRL--WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFG 265
Query: 366 TGADDNKVKVWTVSSGFCFVTFTEHTN-------AVTALHFMANNHSLLSASLDGTVRAW 418
TG+DD +++ + +G + + VT++ F + L + +G W
Sbjct: 266 TGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW 325
Query: 419 DLFRYR---NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR 468
D N T + L G +C G+ D + +W+ R
Sbjct: 326 DTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-NLKIWAFSGHR 377
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 9/203 (4%)
Query: 313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ---QGHYFDVNCLAYSPDSQLLATGAD 369
+N G L+ C ++ +W +S+I K +GH V +A+SP LA+ +
Sbjct: 23 AWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 370 DNKVKVWTVSSG--FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
D +W + C T H N V ++ + + + L + S D +V W++ +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 428 TFTTPSS--RQFVSLASDQSGEVICAGTLD-SFEIFVWSMKTGRLLDILSGHEGPVHGLV 484
+ +S + + S E++ + + D + +++ L GHE V L
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 485 FSPTNATLASSSWDKTVRLWNVF 507
F P+ LAS S D+TVR+W +
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQY 224
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 12/202 (5%)
Query: 355 LAYSPDSQLLATGADDNKVKVWTVS--SGFCFVTFTE-HTNAVTALHFMANNHSLLSASL 411
LA++P LLA+ D ++++W S C +E H V + + + L SAS
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 412 DGTVRAWDLFRYRNFRTFTT--PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG-- 467
D T W + +F TT + S+A SG ++ + D ++VW +
Sbjct: 82 DATTCIWKKNQ-DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK-SVWVWEVDEEDE 139
Query: 468 -RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD--VLT 524
+ +L+ H V +V+ P+ LAS+S+D TV+L+ E + H+ V +
Sbjct: 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 199
Query: 525 VVYRPDGRQLACSTLDGQIHFW 546
+ + P G++LA + D + W
Sbjct: 200 LAFDPSGQRLASCSDDRTVRIW 221
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 47 LPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLH-----CHVVLHRVRFKYPVNAILF 101
+P S +A +P GT L + ++R C VL + V + +
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSE-GHQRTVRKVAW 69
Query: 102 SPNGKYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS 160
SP G Y+A + IW KK FE + TL ++V ++ W+P N L S
Sbjct: 70 SPCGNYLASASFDATTCIW-----KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 124
Query: 161 KDLAVRLFYVKEK 173
+D +V ++ V E+
Sbjct: 125 RDKSVWVWEVDEE 137
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 427 RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL--DILS-GHEGPVHGL 483
R P SR + LA + +G ++ + D I +W + + +LS GH+ V +
Sbjct: 10 RVPAHPDSRCWF-LAWNPAGTLLASCGGDR-RIRIWGTEGDSWICKSVLSEGHQRTVRKV 67
Query: 484 VFSPTNATLASSSWDKTVRLW----NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL 539
+SP LAS+S+D T +W + FE ++E H ++V +V + P G LA +
Sbjct: 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG--HENEVKSVAWAPSGNLLATCSR 125
Query: 540 DGQIHFWD 547
D + W+
Sbjct: 126 DKSVWVWE 133
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 345 QQGHYFDVNCLAYSP-DSQLLATGADDNKVKVW 376
Q H DVNC+A++P + LLA+ +DD +V W
Sbjct: 299 HQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 40/231 (17%)
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSS-----RQFVS-LASDQSGEVICAGTLDSFEI 459
L+S S D TV W L+ F P FVS LA Q + + D +
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK-TL 100
Query: 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF-EGK-GSVESFP 517
+W ++TG GH+ V+ + FSP N + S+ ++ ++LWN+ E K S E
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 518 HTHDVLTVVYRPDGRQ----------LACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR 567
H+ V V Y P + A DG++ W+ N ++ YT +
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHE------ 213
Query: 568 LMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRR 618
S N L S +G YI GG K + ++D+ + +R
Sbjct: 214 ------SNVNH--------LSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 82/205 (40%), Gaps = 11/205 (5%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406
GH V+ LA S ++ + + D +++W + +G + F H + V ++ F +N +
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466
LSA + ++ W++ F + + +VS S + A + F + S+
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR-YSPIMKSANKVQPFAPYFASVGW 192
Query: 467 GRLLDI----------LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF 516
L + HE V+ L SP +A+ DK + +W++ F
Sbjct: 193 DGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF 252
Query: 517 PHTHDVLTVVYRPDGRQLACSTLDG 541
+ + + P + +A T G
Sbjct: 253 DAGSTINQIAFNPKLQWVAVGTDQG 277
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 48 PVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKY 107
P+ S+N V P + +V + R N + + + VN + SPNGKY
Sbjct: 172 PIMKSAN----KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKY 227
Query: 108 IAV-GTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVR 166
IA G K + IW ++ + D + + ++P ++ VG+ D V+
Sbjct: 228 IATGGKDKKLLIW-------DILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT-DQGVK 279
Query: 167 LF 168
+F
Sbjct: 280 IF 281
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 14/247 (5%)
Query: 281 VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340
VG NG+ +Y + + ++ + ++ +N ++ ++ G + + R +
Sbjct: 151 VGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIAN 207
Query: 341 Y-ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF 399
+ I QGH +V LA+ D LA+G +DN V++W S T T H AV A+ +
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267
Query: 400 MANNHSLLS---ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA-SDQSGEVICAGTLD 455
+LL+ ++D + W+ R T + Q SL S S E++
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNA--ATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFP 325
Query: 456 SFEIFVWSMKTGRL---LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512
+ +WS + L +DI H+ V SP L++++ D+ ++ W V++G
Sbjct: 326 DNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Query: 513 VESFPHT 519
P T
Sbjct: 385 KRPIPIT 391
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 11/201 (5%)
Query: 370 DNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMANNHSLLSASL-DGTVRAWDLFRYRNFR 427
+ V VW SG + T+ + V ++ + +++ S LS L +G V +D+ R
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKW-SHDGSFLSVGLGNGLVDIYDVESQTKLR 170
Query: 428 TFTTPSSR-QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS 486
T +R +S +G + ++ + + + G L GH V GL +
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIG----TLQGHSSEVCGLAWR 226
Query: 487 PTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS---TLDGQI 543
LAS D V++W+ H V V + P L + T+D QI
Sbjct: 227 SDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQI 286
Query: 544 HFWDPLNGELMYTIEGRRDIS 564
HFW+ G + T++ ++
Sbjct: 287 HFWNAATGARVNTVDAGSQVT 307
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
+SY + Q+ FD LA+ P +A G+ + +W + F+ +
Sbjct: 108 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS 167
Query: 394 VTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ--FVSLASDQSGEVIC 450
+T L F N + ++S++GT R D F+ R F + + F SL S ++
Sbjct: 168 ITGLKFNPLNTNQFYASSMEGTTRLQD-FKGNILRVFASSDTINIWFCSLDVSASSRMVV 226
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEG 509
G D+ + G+ L L H+ V + +P + LA++S D+TV++W++ +
Sbjct: 227 TG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 284
Query: 510 KGSVE---SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
+G S PH H V + PDG +L + +I +
Sbjct: 285 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 324
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
+SY + Q+ FD LA+ P +A G+ + +W + F+ +
Sbjct: 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS 166
Query: 394 VTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ--FVSLASDQSGEVIC 450
+T L F N + ++S++GT R D F+ R F + + F SL S ++
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQD-FKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEG 509
G D+ + G+ L L H+ V + +P + LA++S D+TV++W++ +
Sbjct: 226 TG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283
Query: 510 KGSVE---SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
+G S PH H V + PDG +L + +I +
Sbjct: 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 97/220 (44%), Gaps = 15/220 (6%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
+SY + Q+ FD LA+ P +A G+ + +W + F+ +
Sbjct: 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS 166
Query: 394 VTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ--FVSLASDQSGEVIC 450
+T L F N + ++S++GT R D F+ R F + + F SL S ++
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRLQD-FKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEG 509
G D+ + G+ L L H+ V + +P + LA++S D+TV++W++ +
Sbjct: 226 TG--DNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283
Query: 510 KGSVE---SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546
+G S PH H V + PDG +L + +I +
Sbjct: 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530
+I H + L F P+ L SSS D +++W+V +G H V +
Sbjct: 130 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 189
Query: 531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR------LMTDRRSAANSSSGKCF 584
GR + ++LDG I W+ G ++T + + G + TDR+ S+S K
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK-- 247
Query: 585 TTLCYSADGSYILAGGSSKYICMYDV 610
L + G Y++AG S I +++V
Sbjct: 248 NNLEFGTYGKYVIAGHVSGVITVHNV 273
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
Q H ++ L + P + L + + D ++K+W+V G T H VT + + +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 406 LLSASLDGTVRAWDLFRYRNFRTF 429
+LSASLDGT+R W+ TF
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTF 216
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 445 SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW 504
SGE + + + D ++ +WS+K G L GH V + + S+S D T+RLW
Sbjct: 147 SGEALISSSQD-MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 471 DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530
+I H + L F P+ L SSS D +++W+V +G H V +
Sbjct: 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDR 192
Query: 531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGR------LMTDRRSAANSSSGKCF 584
GR + ++LDG I W+ G ++T + + G + TDR+ S+S K
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK-- 250
Query: 585 TTLCYSADGSYILAGGSSKYICMYDV 610
L + G Y++AG S I +++V
Sbjct: 251 NNLEFGTYGKYVIAGHVSGVITVHNV 276
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405
Q H ++ L + P + L + + D ++K+W+V G T H VT + + +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 406 LLSASLDGTVRAWDLFRYRNFRTF 429
+LSASLDGT+R W+ TF
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTF 219
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 445 SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW 504
SGE + + + D ++ +WS+K G L GH V + + S+S D T+RLW
Sbjct: 150 SGEALISSSQD-MQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 74/337 (21%), Positives = 126/337 (37%), Gaps = 77/337 (22%)
Query: 371 NKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT 428
N V+TV G T +TEH++ T + + S + G VR WD + +
Sbjct: 37 NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 96
Query: 429 FTTPS-SRQFVSLASDQSGEVICA---GTLDSFEIFVW-------------------SMK 465
T P S ++ D + I A G +F++ K
Sbjct: 97 TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK 156
Query: 466 TGRLLDILSGH--------EGP--------------VHGLVFSPTNATLASSSWDKTVRL 503
R I+SG EGP VH + ++P + AS+ D T+ L
Sbjct: 157 PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVL 216
Query: 504 WNVFEGK-------GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYT 556
+N +G S+++ H+ V + + PDG ++A ++ D I W+ ++ T
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT 276
Query: 557 IE-GRR--DISGGRLMTDRRSAANSSSG--------------------KCFTTLCYSADG 593
I G R D G + T + + S++G K T L SADG
Sbjct: 277 IPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGV 630
+ + + +I +D++ + R F H + G+
Sbjct: 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 68/161 (42%), Gaps = 48/161 (29%)
Query: 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVS-SGFCFVTFTEHTNAVTALHFMANNHSLLS 408
++ +C+A S D Q +A G D+KV V+ +S + V H +T++ F +NN + L
Sbjct: 449 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF-SNNGAFL- 506
Query: 409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF---VWSMK 465
+A+DQS +VI ++FE+ W+
Sbjct: 507 -------------------------------VATDQSRKVIPYSVANNFELAHTNSWTFH 535
Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
T + V + +SP N LA+ S D +V +WN+
Sbjct: 536 TAK-----------VACVSWSPDNVRLATGSLDNSVIVWNM 565
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA------ 401
H V C+++SPD+ LATG+ DN V VW ++ ++H + H M+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP------SDHPIIIKGAHAMSSVNSVI 588
Query: 402 --NNHSLLSASLDGTVRAWDL 420
N +++SA D ++ W++
Sbjct: 589 WLNETTIVSAGQDSNIKFWNV 609
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-------HTNAVTALHFMANNH 404
V+ + Y+PD L A+ D + ++ G F + H+ +V L + +
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM 464
+ SAS D T++ W++ + +T + + L + + + + + + F FV +
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV-NP 311
Query: 465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523
+ G + + GH + L S TL S+ + + W++ G S FP H +
Sbjct: 312 ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFPDVHATM 369
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 43/160 (26%)
Query: 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS----------------------- 379
LK H V L +SPD +A+ + D +K+W V+
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Query: 380 --------SGFCFVTFTE------------HTNAVTALHFMANNHSLLSASLDGTVRAWD 419
S F+ F H A+TAL A+ +L SA +G + +WD
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWD 352
Query: 420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
+ + R F + + + G++ D ++
Sbjct: 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 96 VNAILFSPNGKYIAV--GTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS 153
V+++ ++P+G A G G +V G K VF + ++ +A V L WSPD
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWSPDG 251
Query: 154 NYLLVGSKDLAVRLFYV 170
+ S D ++++ V
Sbjct: 252 TKIASASADKTIKIWNV 268
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 13/144 (9%)
Query: 43 KTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYP--VNAIL 100
K +P+ S N +A+S D F+ ++ + H L V +P + ++
Sbjct: 441 KLTEVPI--SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 498
Query: 101 FSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS 160
FS NG ++ V T + ++ P F + KV ++WSPD+ L GS
Sbjct: 499 FSNNGAFL-VATDQSRKV--IPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555
Query: 161 KDLAVRLFYVKEK------LKGIH 178
D +V ++ + + +KG H
Sbjct: 556 LDNSVIVWNMNKPSDHPIIIKGAH 579
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 4/161 (2%)
Query: 355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT 414
LA SPDS++ + D + VW + + F HT+ + + + L + LD T
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS 474
VR+WDL R + S Q SL +GE + G ++S + V + L
Sbjct: 207 VRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVG-MESSNVEVLHVNKPDKYQ-LH 262
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515
HE V L F+ S+ D + W G +S
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS 303
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380
+ F C G + VW+ +++ + + QGH +C+ S D L TG DN V+ W +
Sbjct: 155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 381 G 381
G
Sbjct: 215 G 215
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 95/257 (36%), Gaps = 33/257 (12%)
Query: 359 PDSQLLATGADDNKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDGTVR 416
PD L G + + + +W +++ + T A AL ++ S DG +
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 417 AWDLFR---YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL 473
WDL R F+ T +S + +++D G + G LD+ + W ++ GR L
Sbjct: 167 VWDLHNQTLVRQFQGHTDGAS--CIDISND--GTKLWTGGLDN-TVRSWDLREGRQLQ-Q 220
Query: 474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQ 533
+ L + PT LA V + +V + + H VL++ + G+
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK-PDKYQLHLHESCVLSLKFAYCGKW 279
Query: 534 LACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593
+ D ++ W R G + + S++ S S D
Sbjct: 280 FVSTGKDNLLNAW--------------RTPYGASIFQSKESSSVLSCD-------ISVDD 318
Query: 594 SYILAGGSSKYICMYDV 610
YI+ G K +Y+V
Sbjct: 319 KYIVTGSGDKKATVYEV 335
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 403 NHSLLSASLDGTVRAWDL------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456
N LLSAS D T+ WD+ R + + T + +A E + D
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 457 FEIFVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGS 512
++ +W + T + + H V+ L F+P + LA+ S DKTV LW++ K
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 513 VESFP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
+ SF H ++ V + P LA S D ++H WD
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 58/108 (53%), Gaps = 7/108 (6%)
Query: 322 VFG-CAKLGQLLVWEWRSESYILKQQ---GHYFDVNCLAYSPDSQ-LLATGADDNKVKVW 376
+FG A +L++W+ R+ + H +VNCL+++P S+ +LATG+ D V +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 377 TVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR 422
+ + +F H + + + + +N ++L++S D + WDL +
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 403 NHSLLSASLDGTVRAWDL------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456
N LLSAS D T+ WD+ R + + T + +A E + D
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 457 FEIFVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGS 512
++ +W + T + + H V+ L F+P + LA+ S DKTV LW++ K
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 513 VESFP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
+ SF H ++ V + P LA S D ++H WD
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 322 VFGCAKLGQ-LLVWEWRSESYILKQQ---GHYFDVNCLAYSPDSQ-LLATGADDNKVKVW 376
+FG Q L++W+ R+ + H +VNCL+++P S+ +LATG+ D V +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 377 TVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR 422
+ + +F H + + + + +N ++L++S D + WDL +
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 403 NHSLLSASLDGTVRAWDL------FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456
N LLSAS D T+ WD+ R + + T + +A E + D
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 457 FEIFVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGS 512
++ +W + T + + H V+ L F+P + LA+ S DKTV LW++ K
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 513 VESFP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
+ SF H ++ V + P LA S D ++H WD
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 322 VFGCAKLGQ-LLVWEWRSESYILKQQ---GHYFDVNCLAYSPDSQ-LLATGADDNKVKVW 376
+FG Q L++W+ R+ + H +VNCL+++P S+ +LATG+ D V +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 377 TVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR 422
+ + +F H + + + + +N ++L++S D + WDL +
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 47/174 (27%)
Query: 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-------CFVTFTEHTNAV 394
+L + H + +A+ P + LLA G+ D+ V +W H N V
Sbjct: 51 VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110
Query: 395 TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454
+ + + + L + S D +V W+ +D+SGE
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWE----------------------TDESGE------- 141
Query: 455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508
+E + +L H V +++ P+ A LASSS+D TVR+W ++
Sbjct: 142 -EYE----------CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 86 VLHRVRFKYPVNAILFSPNGKYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKV 144
VL K + ++ + P+ +A G+ V IW F +L+ + ++V
Sbjct: 51 VLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV 110
Query: 145 TALNWSPDSNYLLVGSKDLAVRLFYVKE 172
+ WS D YL S+D +V ++ E
Sbjct: 111 KGVAWSNDGYYLATCSRDKSVWIWETDE 138
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 95 PVNAILFSPNGKYIAVGT-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS 153
V + +S +G Y+A + K V IW + +E +E I L + + V + W P
Sbjct: 109 EVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE---YECISVLQEHSQDVKHVIWHPSE 165
Query: 154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA 213
L S D VR++ K +L GH +V F KT+ V R+ + +
Sbjct: 166 ALLASSSYDDTVRIW----KDYDDDWECVAVLNGHEGTVWSSDFD---KTEGVFRLCSGS 218
Query: 214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK--WGL 254
D + W + G+D + D+ E P +R+V WG
Sbjct: 219 DDSTVRVWKYMGDD-EDDQQEWVCEAILPDVHKRQVYNVAWGF 260
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 7/100 (7%)
Query: 327 KLGQLLVWEWRSE----SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG 381
+GQL +W++R + S IL G ++C+ P+ Q ++ATG D + +W V G
Sbjct: 210 SIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
Query: 382 FCFVTFTE-HTNAVTALHFMANN-HSLLSASLDGTVRAWD 419
V+ + H + +HF +N L + S DG++ WD
Sbjct: 270 TMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 322 VFGCAKLGQ-LLVWEWRSESYILKQQ---GHYFDVNCLAYSPDSQ-LLATGADDNKVKVW 376
+FG Q L++W+ RS + H +VNCL+++P S+ +LATG+ D V +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 377 TVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR 422
+ + +F H + + + + +N ++L++S D + WDL +
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 406 LLSASLDGTVRAWDLF------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
LLSAS D T+ WD+ + + +T T + ++ E + D ++
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKL 252
Query: 460 FVW---SMKTGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVES 515
+W S T + + H V+ L F+P + LA+ S DKTV LW++ K + S
Sbjct: 253 MIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS 312
Query: 516 FP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
F H ++ V + P LA S D +++ WD
Sbjct: 313 FESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 406 LLSASLDGTVRAWDLF------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
LLSAS D TV WD+ + + + T S +A E + D ++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 460 FVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVES 515
+W + T + ++ H V+ L F+P + LA+ S DKTV LW++ K + +
Sbjct: 255 MIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 516 FP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
F H ++ V + P LA S D +++ WD
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 75/181 (41%), Gaps = 18/181 (9%)
Query: 390 HTNAVTALHFMANNHSLL-SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448
H +V + + ++ + S+S D T++ WD + F + ++ +
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVF 507
+ A ++ + +K+G IL GH + + +SP + LA++S D V+LW+V
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 508 EGKG--------------SVESFPHTHD--VLTVVYRPDGRQLACSTLDGQIHFWDPLNG 551
G +VES H+ V + + DG L D ++ W+ NG
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 552 E 552
E
Sbjct: 278 E 278
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 363 LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN-NHSLLSASLDGTVRAWDLF 421
L+A G KV++ + SG C H + A+ + ++ L +AS D V+ WD+
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 422 RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH 481
R SG C TLD K+ + + H G V+
Sbjct: 218 R---------------------ASG---CLITLDQHN----GKKSQAVESANTAHNGKVN 249
Query: 482 GLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF 516
GL F+ L + D +RLWN G+ ++ ++
Sbjct: 250 GLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNY 284
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337
+V VG L + C H+L R++I ++ ++++ + ++ +W+ R
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 338 SESYIL---------KQQG-------HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381
S L K Q H VN L ++ D L T DN++++W S+G
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 406 LLSASLDGTVRAWDLF------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459
LLSAS D TV WD+ + + + T S +A E + D ++
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKL 254
Query: 460 FVWSMK---TGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWNVFEGKGSVES 515
+W + T + ++ H V+ L F+P + LA+ S DKTV LW++ K + +
Sbjct: 255 XIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT 314
Query: 516 FP-HTHDVLTVVYRPDGRQ-LACSTLDGQIHFWD 547
F H ++ V + P LA S D +++ WD
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 96/250 (38%), Gaps = 30/250 (12%)
Query: 318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVW 376
G +LV K G R + + GH V +A+ P + ++A+G++D V VW
Sbjct: 57 GAFLVLPLGKTG-------RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
Query: 377 TVSSGFC-------FVTFTEHTN--AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427
+ G +T HT + A H A N LLSA D + WD+
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGXDNVILVWDVGTGAAVL 168
Query: 428 TF---TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG--PVHG 482
T P + V + D G +IC D + K + + HEG PVH
Sbjct: 169 TLGPDVHPDTIYSVDWSRD--GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHA 226
Query: 483 LVFSPTN--ATLASSSWDKTVRLWNV--FEGKGSVESFPHTHDVLTVVYRPDGRQL-ACS 537
+ S T S ++ V LW+ E S++ + VL + PD + C
Sbjct: 227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCG 286
Query: 538 TLDGQIHFWD 547
D I +++
Sbjct: 287 KGDSSIRYFE 296
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 87/221 (39%), Gaps = 23/221 (10%)
Query: 347 GHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFC-------FVTFTEHTN--AVTA 396
GH V +A+ P + ++A+G++D V VW + G +T HT + A
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 397 LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF---TTPSSRQFVSLASDQSGEVICAGT 453
H A N LLSA D + WD+ T P + V + D G +IC
Sbjct: 139 WHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD--GALICTSC 195
Query: 454 LDSFEIFVWSMKTGRLLDILSGHEG--PVHGLVFSPTN--ATLASSSWDKTVRLWNV--F 507
D + K + + HEG PVH + S T S ++ V LW+
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHL 255
Query: 508 EGKGSVESFPHTHDVLTVVYRPDGRQL-ACSTLDGQIHFWD 547
E S++ + VL + PD + C D I +++
Sbjct: 256 EEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFE 296
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFS-PTNAT-LASSSWDKTVRLWNVFEGK--- 510
+ +IF +T +L+D L+GHEGPV + ++ P T LAS S+D V +W G+
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91
Query: 511 -----------GSVESFPHTHDVLTVVYRPDGR 532
SV+ PH + L +V DG+
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFS-PTNAT-LASSSWDKTVRLWNVFEGK--- 510
+ +IF +T +L+D L+GHEGPV + ++ P T LAS S+D V +W G+
Sbjct: 34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 93
Query: 511 -----------GSVESFPHTHDVLTVVYRPDGR 532
SV+ PH + L +V DG+
Sbjct: 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFS-PTNAT-LASSSWDKTVRLWNVFEGKGSV 513
+ +IF +T +L+D L+GHEGPV + ++ P T LAS S+D V +W G+ S
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ 91
Query: 514 ESFP--HTHDVLTVVYRPD--GRQLACSTLDGQI 543
+ H+ V +V + P G L ++ DG++
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV 125
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFS-PTNAT-LASSSWDKTVRLWNVFEGKGSV 513
+ +IF +T +L+D L+GHEGPV + ++ P T LAS S+D V +W G+ S
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQ 91
Query: 514 ESFP--HTHDVLTVVYRPD--GRQLACSTLDGQI 543
+ H+ V +V + P G L ++ DG++
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV 125
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFS-PTNAT-LASSSWDKTVRLWNVFEGK--- 510
+ +IF +T +L+D L+GHEGPV + ++ P T LAS S+D V +W G+
Sbjct: 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ 91
Query: 511 -----------GSVESFPHTHDVLTVVYRPDGR 532
SV+ PH + L +V DG+
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA-NNHS 405
GH +V L++ ++ +G+ D KVW G H +V ++ + +
Sbjct: 102 GHQGNVCSLSFQD--GVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENK 157
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465
L+AS D T++ W + +TF+ + LA G I ++
Sbjct: 158 FLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLV--DXH 213
Query: 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG 509
TG +L GHE V+ + P N + S D+TVR+W+ G
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLP-NGDIVSCGEDRTVRIWSKENG 256
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 406 LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV-SLASDQSGEVICAGTLDSF--EIFVW 462
+ S S DGTVR W + + + + F+ S+ D E++ G D+ + ++
Sbjct: 32 VASVSRDGTVRLWS--KDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLF 89
Query: 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLW 504
+ L L GH+G V L F + + S SWDKT ++W
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVW 129
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 57 RIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVGTGKL 115
+AV DG F+ + + ++ H VL + V I PNG ++ G +
Sbjct: 189 HLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRT 247
Query: 116 VQIW-RSPGFKKEVFAFELIRTLADCNDKVTALNWSPD---SNYLLVGSKDLAVRLF 168
V+IW + G K+V I WS D + ++VGS D VR+F
Sbjct: 248 VRIWSKENGSLKQVITLPAISI------------WSVDCXSNGDIIVGSSDNLVRIF 292
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV---VLHRVRFKYPVNAILFSPNGK 106
E + + I +PD ++T ++ + L L +R + ++PN K
Sbjct: 50 EHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 109
Query: 107 YIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAV 165
AVG+G +++ I F++E + V +L+W P+S L GS D
Sbjct: 110 KFAVGSGSRVISICY---FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166
Query: 166 RLF--YVKE 172
R+F Y+KE
Sbjct: 167 RIFSAYIKE 175
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 60/162 (37%), Gaps = 52/162 (32%)
Query: 352 VNCLAYSPDS---QLLATGADDNKVKVWTVSSGFCFVTFTE--HTNAVTALHFMANNHSL 406
+ CL++SP + L G+ N V+ W V + + HT V + + + +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466
+AS D T + WDL SS Q + +A
Sbjct: 102 FTASCDKTAKMWDL------------SSNQAIQIAQ------------------------ 125
Query: 467 GRLLDILSGHEGPVHGL--VFSPTNATLASSSWDKTVRLWNV 506
H+ PV + + +P + + + SWDKT++ W+
Sbjct: 126 ---------HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 470 LDILSGHEGPVHGLVFSPTNAT---LASSSWDKTVRLWNVFEGKGSVESFP-----HTHD 521
+++ S + + L FSP L + SW VR W V + S ++ P HT
Sbjct: 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEV---QDSGQTIPKAQQMHTGP 88
Query: 522 VLTVVYRPDGRQLACSTLDGQIHFWD 547
VL V + DG ++ ++ D WD
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWD 114
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV--VYRPDGRQ 533
H GPV + +S + + ++S DKT ++W++ + +++ H V T+ + P+
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 534 LACSTLDGQIHFWDPLNGELMYTIE 558
+ + D + FWD + M ++
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQ 168
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV---VLHRVRFKYPVNAILFSPNGK 106
E + + + +PD ++T ++ + L L +R + ++PN K
Sbjct: 50 EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK 109
Query: 107 YIAVGTG-KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAV 165
AVG+G +++ I F++E + V +L+W P+S L GS D
Sbjct: 110 KFAVGSGSRVISICY---FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166
Query: 166 RLF--YVKE 172
R+F Y+KE
Sbjct: 167 RIFSAYIKE 175
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 16/188 (8%)
Query: 431 TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNA 490
T R + ++ G+++ + + DS VW G L L GH G + +
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDS-SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 491 TLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLD------GQIH 544
+ S D +++LW+V G+ V ++ V V + P G + LD G I+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQ-CVATWKSPVPVKRVEFSPCGNYF-LAILDNVMKNPGSIN 145
Query: 545 FWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKY 604
++ + + + +++T A + +G +S G YI+AG
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG-------WSTKGKYIIAGHKDGK 198
Query: 605 ICMYDVAD 612
I YDV++
Sbjct: 199 ISKYDVSN 206
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/160 (18%), Positives = 65/160 (40%), Gaps = 12/160 (7%)
Query: 356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-HTNAVTALHFMANNHSLLSASLDGT 414
+S + + G D K+ + VS+ + +V + H +++ + F + +++S D
Sbjct: 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
Query: 415 VRAWDLFRYRNFRTFTTPSS---------RQFVSLASDQSGEVICAGTLDS--FEIFVWS 463
D+ + + + T ++F+ L Q + + + + FE +
Sbjct: 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301
Query: 464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL 503
+ + GH GP++ + SP + AS D +RL
Sbjct: 302 KIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/90 (21%), Positives = 40/90 (44%)
Query: 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN 402
+K GH + + Y+ + LL + + D+ VW +G T HT + ++
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTP 432
++ S D +++ WD+ + T+ +P
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSP 115
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI-AVGTGKLVQIWRSPGFKK----EVF 129
RCH +NL YPVN+I FSP K++ G+ ++ W KK F
Sbjct: 239 RCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Query: 130 AFELIRTLADCNDKVTALNWSPDS 153
+ + +A C+D + L S D+
Sbjct: 293 NEDSVVKIA-CSDNILCLATSDDT 315
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI-AVGTGKLVQIWRSPGFKK----EVF 129
RCH +NL YPVN+I FSP K++ G+ ++ W KK F
Sbjct: 239 RCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Query: 130 AFELIRTLADCNDKVTALNWSPDS 153
+ + +A C+D + L S D+
Sbjct: 293 NEDSVVKIA-CSDNILCLATSDDT 315
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI-AVGTGKLVQIWRSPGFKK----EVF 129
RCH +NL YPVN+I FSP K++ G+ ++ W KK F
Sbjct: 239 RCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Query: 130 AFELIRTLADCNDKVTALNWSPDS 153
+ + +A C+D + L S D+
Sbjct: 293 NEDSVVKIA-CSDNILCLATSDDT 315
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI-AVGTGKLVQIWRSPGFKK----EVF 129
RCH +NL YPVN+I FSP K++ G+ ++ W KK F
Sbjct: 239 RCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
Query: 130 AFELIRTLADCNDKVTALNWSPDS 153
+ + +A C+D + L S D+
Sbjct: 293 NEDSVVKIA-CSDNILCLATSDDT 315
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 296 FVCIHLLSISREKITTAVFNELGNW-------LVFGCAKLGQLLVWEWRSESYILKQQGH 348
F C++ L +E +F NW LVF ++ ++E S+ I Q
Sbjct: 43 FKCVNSL---KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS- 98
Query: 349 YFDVNC------LAYSPDSQ----LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
Y D + A++ DS LLA +++ + C + H NA+ L
Sbjct: 99 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 158
Query: 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS--GEVICAGTLD 455
F + + LLS S D +R W++ F + L++D GE I + +D
Sbjct: 159 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 218
Query: 456 SFEIFVWSMKTGRLLDIL 473
+ +W + + R+++ +
Sbjct: 219 -HSLKLWRINSKRMMNAI 235
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 24/205 (11%)
Query: 363 LLATGADDNKVKVWTVS------SGFCFVTFTEHTNAVTALHFMANNHSLL----SASLD 412
+LA+G ++ ++ +W ++ S + +T + ++V + +A N SL SA
Sbjct: 128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS 187
Query: 413 GTVRAWDLFRYRNF--RTFTTPSS--RQFVSLAS---DQSGEVICA-GTLDSFEIFVWSM 464
WDL + ++T+P+S +Q +S+ S V A G+ + I +W +
Sbjct: 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDL 247
Query: 465 KTGR--LLDILSGHEGPVHGLVFSPTNA-TLASSSWDKTVRLWNVFEGKGSVESFPHTHD 521
+ L + GH+ + L + + L SS D TV LWN E + FP +
Sbjct: 248 RNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP-ESAEQLSQFPARGN 306
Query: 522 -VLTVVYRPDGRQL-ACSTLDGQIH 544
+ P+ L AC++ D +I
Sbjct: 307 WCFKTKFAPEAPDLFACASFDNKIE 331
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH---FMAN 402
QG F ++ L DSQ AT D ++VW V++ C +T +
Sbjct: 253 QGGIFALSWL----DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 308
Query: 403 NHSLLSASLDGTVRAWDLFRYRNFRTFT 430
N ++S SLDGT+ ++L +T +
Sbjct: 309 NGRIISLSLDGTLNFYELGHDEVLKTIS 336
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH---FMAN 402
QG F ++ L DSQ AT D ++VW V++ C +T +
Sbjct: 253 QGGIFALSWL----DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 308
Query: 403 NHSLLSASLDGTVRAWDLFRYRNFRTFT 430
N ++S SLDGT+ ++L +T +
Sbjct: 309 NGRIISLSLDGTLNFYELGHDEVLKTIS 336
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 296 FVCIHLLSISREKITTAVFNELGNW-------LVFGCAKLGQLLVWEWRSESYILKQQGH 348
F C++ L +E +F NW LVF ++ ++E S+ I Q
Sbjct: 7 FKCVNSL---KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS- 62
Query: 349 YFDVNC------LAYSPDSQ----LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
Y D + A++ DS LLA +++ + C + H NA+ L
Sbjct: 63 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 122
Query: 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS--GEVICAGTLD 455
F + + LLS S D +R W++ F + L++D GE I + +D
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 182
Query: 456 SFEIFVWSMKTGRLLDIL 473
+ +W + + R+++ +
Sbjct: 183 H-SLKLWRINSKRMMNAI 199
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 296 FVCIHLLSISREKITTAVFNELGNW-------LVFGCAKLGQLLVWEWRSESYILKQQGH 348
F C++ L +E +F NW LVF ++ ++E S+ I Q
Sbjct: 6 FKCVNSL---KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS- 61
Query: 349 YFDVNC------LAYSPDSQ----LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
Y D + A++ DS LLA +++ + C + H NA+ L
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS--GEVICAGTLD 455
F + + LLS S D +R W++ F + L++D GE I + +D
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 456 SFEIFVWSMKTGRLLDIL 473
+ +W + + R+++ +
Sbjct: 182 H-SLKLWRINSKRMMNAI 198
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 296 FVCIHLLSISREKITTAVFNELGNW-------LVFGCAKLGQLLVWEWRSESYILKQQGH 348
F C++ L +E +F NW LVF ++ ++E S+ I Q
Sbjct: 2 FKCVNSL---KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS- 57
Query: 349 YFDVNC------LAYSPDSQ----LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
Y D + A++ DS LLA +++ + C + H NA+ L
Sbjct: 58 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 117
Query: 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS--GEVICAGTLD 455
F + + LLS S D +R W++ F + L++D GE I + +D
Sbjct: 118 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 177
Query: 456 SFEIFVWSMKTGRLLDIL 473
+ +W + + R+++ +
Sbjct: 178 H-SLKLWRINSKRMMNAI 194
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 25/198 (12%)
Query: 296 FVCIHLLSISREKITTAVFNELGNW-------LVFGCAKLGQLLVWEWRSESYILKQQGH 348
F C++ L +E +F NW LVF ++ ++E S+ I Q
Sbjct: 6 FKCVNSL---KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQS- 61
Query: 349 YFDVNC------LAYSPDSQ----LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398
Y D + A++ DS LLA +++ + C + H NA+ L
Sbjct: 62 YVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELK 121
Query: 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS--GEVICAGTLD 455
F + + LLS S D +R W++ F + L++D GE I + +D
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD 181
Query: 456 SFEIFVWSMKTGRLLDIL 473
+ +W + + R+++ +
Sbjct: 182 H-SLKLWRINSKRMMNAI 198
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 510 KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557
+ S+ F H+ V+++ + G L + DG++ FWD E + T+
Sbjct: 282 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506
H V L F+ + TL S+ WD +R W+V
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 510 KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557
+ S+ F H+ V+++ + G L + DG++ FWD E + T+
Sbjct: 292 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVF 323
P K+T+ D LD +++G NG +Y I R+++++ + L F
Sbjct: 98 PGKITSIDTDASLDWMLIGLQNGSMIVYD-----------IDRDQLSSFKLDNLQKSSFF 146
Query: 324 GCAKLGQLLVWEW 336
A+L ++ +W
Sbjct: 147 PAARLSPIVSIQW 159
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 124 FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK 173
++++ ++ RT +D + VT ++W+P SN ++ S+D R YV EK
Sbjct: 38 YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD---RNAYVYEK 84
>pdb|1OZ7|B Chain B, Crystal Structure Of Echicetin From The Venom Of Indian
Saw- Scaled Viper (Echis Carinatus) At 2.4 Resolution
Length = 123
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR 435
W+V G+C+ F E N A F H DG L +RN + S
Sbjct: 6 WSVYEGYCYKVFKERMNWADAEKFCTKQHK------DGH-----LVSFRNSKEVDFVISL 54
Query: 436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN 489
F L +D ++ G D + W G LD + H ++ T+
Sbjct: 55 AFPMLKND----LVWIGLTDYWRDCNWEWSDGAQLD-YKAWDNERHCFIYKNTD 103
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTE 641
+Y + G+ KY+ + + +Q++ R+++ NLS++ VI NSKN+ +
Sbjct: 493 AYTRSLGAEKYLVVVNFKEQMM--RYKLPDNLSIEKVIIDSNSKNVVK 538
>pdb|3PEH|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Plasmodium Falciparum, Pfl1070c In The Presence Of
A Thienopyrimidine Derivative
pdb|3PEH|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Plasmodium Falciparum, Pfl1070c In The Presence Of
A Thienopyrimidine Derivative
pdb|3PEJ|A Chain A, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Plasmodium Falciparum, Pfl1070c In The Presence Of
Macbecin
pdb|3PEJ|B Chain B, Crystal Structure Of The N-Terminal Domain Of An Hsp90
From Plasmodium Falciparum, Pfl1070c In The Presence Of
Macbecin
Length = 281
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 17/90 (18%)
Query: 125 KKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFL 184
+KEVF ELI AD +K+ L+ S +S +L K L +R I NK
Sbjct: 46 QKEVFLRELISNAADALEKIRFLSLSDES--VLGEEKKLEIR----------ISANKEKN 93
Query: 185 LLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214
+L D+ +G K D +N + TIA+
Sbjct: 94 ILSITDTGIGM-----TKVDLINNLGTIAK 118
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS----ESYILKQQGHYFDVNCLAYSP 359
+ + K+T A FN +WL+ + + +W+ R+ SYI + H VN ++P
Sbjct: 201 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI-AEMPHEKPVNAAYFNP 259
Query: 360 -DSQLLATGADDNKVKVWT 377
DS L T N+++V++
Sbjct: 260 TDSTKLLTTDQRNEIRVYS 278
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 11/201 (5%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
+SY L + FD V L + P +A G+ + +W V + F+ +A
Sbjct: 60 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDA 119
Query: 394 VTALHF-MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG 452
+T + F N + L +S+ G D F + F S + D S
Sbjct: 120 ITGMKFNQFNTNQLFVSSIRGATTLRD-FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLA 178
Query: 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLW---NVFE 508
T DS + G + H+ V F+P + +A+SS D TV+LW N+ +
Sbjct: 179 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD 238
Query: 509 GKGSVESFPHTHDVLTVVYRP 529
+ PH V + P
Sbjct: 239 KNSYIAEMPHEKPVNAAYFNP 259
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 76/201 (37%), Gaps = 11/201 (5%)
Query: 339 ESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWT--VSSGFCFVTFTEHTNA 393
+SY L + FD V L + P +A G+ + +W V + F+ +A
Sbjct: 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDA 120
Query: 394 VTALHF-MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG 452
+T + F N + L +S+ G D F + F S + D S
Sbjct: 121 ITGMKFNQFNTNQLFVSSIRGATTLRD-FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLA 179
Query: 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLW---NVFE 508
T DS + G + H+ V F+P + +A+SS D TV+LW N+ +
Sbjct: 180 TGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD 239
Query: 509 GKGSVESFPHTHDVLTVVYRP 529
+ PH V + P
Sbjct: 240 KNSYIAEMPHEKPVNAAYFNP 260
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS----ESYILKQQGHYFDVNCLAYSP 359
+ + K+T A FN +WL+ + + +W+ R+ SYI + H VN ++P
Sbjct: 202 LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYI-AEMPHEKPVNAAYFNP 260
Query: 360 -DSQLLATGADDNKVKVWT 377
DS L T N+++V++
Sbjct: 261 TDSTKLLTTDQRNEIRVYS 279
>pdb|2OJH|A Chain A, The Structure Of Putative Tolb From Agrobacterium
Tumefaciens
Length = 297
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 146 ALNWSPDSNYLLVGSKDLAVRL 167
A NWSPD YLL+ S+ L RL
Sbjct: 46 APNWSPDGKYLLLNSEGLLYRL 67
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 329 GQLLVWE-WRSESYILKQQGHYFD---VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF 384
G + +WE ES ++ + Y V L+ D +G D VKVW +S
Sbjct: 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL 174
Query: 385 VTFTEHTNAVTALHFMANNHSL-LSASLDGTVRAWD 419
++ H++ V + ++ LS DG + WD
Sbjct: 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|2VLC|A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
pdb|2VLC|B Chain B, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
Length = 570
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 528 RPDGRQLACSTL-DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTT 586
R GR C + DG+ + +P+ ++ + D++ +L T RR S+GKC TT
Sbjct: 319 RISGRNGLCVRVRDGKYNNGNPIQ---LWPCKQNSDVN--QLWTLRRDGTIRSNGKCLTT 373
Query: 587 LCYSADGSYIL 597
YSA G Y++
Sbjct: 374 NGYSA-GDYVM 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,437,190
Number of Sequences: 62578
Number of extensions: 1145015
Number of successful extensions: 4022
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2770
Number of HSP's gapped (non-prelim): 585
length of query: 860
length of database: 14,973,337
effective HSP length: 107
effective length of query: 753
effective length of database: 8,277,491
effective search space: 6232950723
effective search space used: 6232950723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)