Query 038577
Match_columns 860
No_of_seqs 1174 out of 4588
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 12:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038577.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038577hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0291 WD40-repeat-containing 100.0 2E-121 4E-126 910.2 89.3 840 1-857 3-855 (893)
2 KOG0306 WD40-repeat-containing 100.0 4.1E-72 8.9E-77 558.0 58.1 758 3-858 8-859 (888)
3 KOG0319 WD40-repeat-containing 100.0 1.6E-69 3.5E-74 539.6 58.5 721 2-853 9-767 (775)
4 KOG1539 WD repeat protein [Gen 100.0 3.1E-61 6.6E-66 486.6 60.2 717 63-857 45-909 (910)
5 KOG0319 WD40-repeat-containing 100.0 2E-58 4.4E-63 460.4 45.5 534 16-612 66-620 (775)
6 KOG0318 WD40 repeat stress pro 100.0 8.6E-54 1.9E-58 410.2 63.2 537 3-613 4-562 (603)
7 KOG0291 WD40-repeat-containing 100.0 7.6E-51 1.6E-55 406.5 71.3 563 56-722 18-623 (893)
8 KOG0318 WD40 repeat stress pro 100.0 1.6E-49 3.5E-54 380.9 57.5 519 18-611 65-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 3E-50 6.5E-55 402.0 54.5 522 62-718 32-671 (888)
10 KOG0271 Notchless-like WD40 re 100.0 5.2E-52 1.1E-56 381.9 31.3 339 131-547 105-479 (480)
11 KOG0271 Notchless-like WD40 re 100.0 3.8E-52 8.2E-57 382.8 28.6 326 47-419 110-479 (480)
12 KOG1408 WD40 repeat protein [F 100.0 1.4E-45 2.9E-50 365.8 44.8 561 8-615 32-717 (1080)
13 KOG1408 WD40 repeat protein [F 100.0 2.6E-43 5.6E-48 349.7 39.3 510 17-550 83-714 (1080)
14 KOG0272 U4/U6 small nuclear ri 100.0 1.9E-43 4.2E-48 330.4 24.0 283 304-609 173-458 (459)
15 KOG1063 RNA polymerase II elon 100.0 7.6E-40 1.6E-44 325.1 50.8 562 20-611 22-699 (764)
16 KOG0272 U4/U6 small nuclear ri 100.0 9.5E-43 2.1E-47 325.7 24.1 283 262-547 173-458 (459)
17 KOG1539 WD repeat protein [Gen 100.0 5.3E-40 1.1E-44 333.1 44.2 481 23-550 124-649 (910)
18 KOG0276 Vesicle coat complex C 100.0 4.6E-39 1E-43 315.3 42.4 468 50-711 11-490 (794)
19 KOG0286 G-protein beta subunit 100.0 7.6E-40 1.7E-44 291.4 33.1 291 45-377 48-343 (343)
20 KOG0286 G-protein beta subunit 100.0 1.4E-39 3E-44 289.8 33.2 290 180-505 46-343 (343)
21 KOG0315 G-protein beta subunit 100.0 8.8E-40 1.9E-44 283.9 30.6 282 277-562 11-301 (311)
22 KOG2106 Uncharacterized conser 100.0 1.7E-37 3.8E-42 296.6 49.3 516 17-610 70-625 (626)
23 KOG0315 G-protein beta subunit 100.0 2.5E-39 5.4E-44 281.1 32.3 291 65-400 11-309 (311)
24 KOG0279 G protein beta subunit 100.0 5.1E-39 1.1E-43 284.5 33.6 301 297-611 6-313 (315)
25 KOG0296 Angio-associated migra 100.0 3.7E-38 7.9E-43 289.6 34.0 331 257-611 57-398 (399)
26 KOG0279 G protein beta subunit 100.0 6.7E-38 1.5E-42 277.4 33.1 296 341-711 7-313 (315)
27 KOG2106 Uncharacterized conser 100.0 2.5E-35 5.4E-40 281.9 51.0 538 56-710 69-625 (626)
28 KOG0273 Beta-transducin family 100.0 1.5E-37 3.2E-42 295.0 33.0 324 262-611 176-523 (524)
29 KOG0273 Beta-transducin family 100.0 1.8E-37 3.9E-42 294.4 32.7 322 50-421 176-523 (524)
30 KOG0296 Angio-associated migra 100.0 6.4E-37 1.4E-41 281.5 34.1 330 134-507 57-398 (399)
31 KOG1063 RNA polymerase II elon 100.0 6.9E-36 1.5E-40 297.1 43.9 559 8-611 50-763 (764)
32 KOG0310 Conserved WD40 repeat- 100.0 4.5E-35 9.7E-40 280.2 37.1 467 249-856 11-483 (487)
33 KOG0292 Vesicle coat complex C 100.0 1.9E-34 4.2E-39 294.0 43.4 498 50-611 7-518 (1202)
34 KOG0276 Vesicle coat complex C 100.0 5.2E-34 1.1E-38 280.0 43.8 458 13-548 14-489 (794)
35 KOG0295 WD40 repeat-containing 100.0 3.3E-36 7.1E-41 276.6 23.6 291 297-610 99-405 (406)
36 KOG0263 Transcription initiati 100.0 5.8E-36 1.3E-40 303.8 26.9 279 261-553 375-653 (707)
37 KOG0292 Vesicle coat complex C 100.0 9.3E-33 2E-37 281.8 49.9 462 14-538 11-547 (1202)
38 KOG0295 WD40 repeat-containing 100.0 7.5E-36 1.6E-40 274.2 24.4 306 133-548 100-405 (406)
39 KOG2048 WD40 repeat protein [G 100.0 1.4E-32 2.9E-37 273.6 49.2 501 51-614 24-551 (691)
40 KOG0645 WD40 repeat protein [G 100.0 2.2E-34 4.9E-39 253.9 32.4 290 45-379 7-311 (312)
41 KOG2048 WD40 repeat protein [G 100.0 4.1E-32 8.8E-37 270.2 52.4 454 92-615 24-509 (691)
42 KOG0285 Pleiotropic regulator 100.0 2.8E-35 6.1E-40 269.4 26.1 294 129-465 139-439 (460)
43 KOG0284 Polyadenylation factor 100.0 1.1E-36 2.3E-41 283.8 17.1 283 306-610 96-379 (464)
44 KOG0284 Polyadenylation factor 100.0 1.5E-36 3.3E-41 282.8 16.8 283 263-548 95-379 (464)
45 KOG0263 Transcription initiati 100.0 1.8E-35 3.9E-40 300.3 23.8 282 298-613 370-651 (707)
46 KOG0265 U5 snRNP-specific prot 100.0 4.5E-34 9.8E-39 255.9 27.0 288 298-609 39-336 (338)
47 KOG0265 U5 snRNP-specific prot 100.0 1.1E-33 2.3E-38 253.5 28.8 291 181-505 39-336 (338)
48 KOG0645 WD40 repeat protein [G 100.0 1.3E-32 2.8E-37 242.8 33.3 290 133-507 6-311 (312)
49 KOG0285 Pleiotropic regulator 100.0 8.5E-34 1.8E-38 259.7 26.4 287 258-549 145-439 (460)
50 KOG0293 WD40 repeat-containing 100.0 1.2E-33 2.6E-38 263.7 24.0 301 130-509 213-515 (519)
51 KOG0293 WD40 repeat-containing 100.0 1.4E-33 3.1E-38 263.1 23.8 286 92-422 223-514 (519)
52 cd00200 WD40 WD40 domain, foun 100.0 4E-32 8.6E-37 277.8 36.9 287 300-609 3-289 (289)
53 cd00200 WD40 WD40 domain, foun 100.0 1.6E-31 3.4E-36 273.4 38.4 285 260-547 5-289 (289)
54 KOG0282 mRNA splicing factor [ 100.0 5.4E-34 1.2E-38 272.2 18.4 288 257-547 207-503 (503)
55 KOG0266 WD40 repeat-containing 100.0 3.7E-32 8E-37 287.9 34.4 287 261-549 156-454 (456)
56 KOG0266 WD40 repeat-containing 100.0 6.8E-32 1.5E-36 285.8 33.3 283 306-611 159-454 (456)
57 KOG0316 Conserved WD40 repeat- 100.0 6.9E-32 1.5E-36 232.9 26.6 285 343-709 11-297 (307)
58 PLN00181 protein SPA1-RELATED; 100.0 2.1E-30 4.5E-35 297.3 42.5 313 285-610 457-792 (793)
59 KOG0316 Conserved WD40 repeat- 100.0 2.9E-31 6.3E-36 229.0 26.0 282 258-547 11-297 (307)
60 KOG0643 Translation initiation 100.0 1.5E-30 3.4E-35 229.1 28.3 292 182-509 3-319 (327)
61 KOG0275 Conserved WD40 repeat- 100.0 2.5E-32 5.5E-37 246.5 17.0 284 48-377 209-507 (508)
62 KOG0281 Beta-TrCP (transducin 100.0 2E-32 4.3E-37 249.6 15.1 276 92-425 196-481 (499)
63 PLN00181 protein SPA1-RELATED; 100.0 1.5E-29 3.3E-34 290.1 42.2 284 259-548 478-792 (793)
64 KOG0281 Beta-TrCP (transducin 100.0 3.9E-32 8.4E-37 247.7 16.2 281 307-614 198-480 (499)
65 KOG0282 mRNA splicing factor [ 100.0 1.1E-31 2.5E-36 256.4 19.5 287 44-377 206-503 (503)
66 KOG1446 Histone H3 (Lys4) meth 100.0 7E-29 1.5E-33 225.5 33.6 290 297-612 5-304 (311)
67 KOG0313 Microtubule binding pr 100.0 7.5E-30 1.6E-34 236.2 27.6 278 262-548 103-417 (423)
68 KOG0640 mRNA cleavage stimulat 100.0 1.9E-30 4.2E-35 233.1 22.9 302 134-506 105-425 (430)
69 KOG0643 Translation initiation 100.0 7.3E-30 1.6E-34 224.9 26.0 295 344-708 5-314 (327)
70 KOG1407 WD40 repeat protein [F 100.0 2.1E-29 4.6E-34 221.3 27.1 277 300-602 14-293 (313)
71 KOG0278 Serine/threonine kinas 100.0 9.5E-31 2E-35 227.9 18.0 290 300-615 8-301 (334)
72 KOG0278 Serine/threonine kinas 100.0 1.3E-30 2.8E-35 227.1 18.0 290 258-554 8-302 (334)
73 KOG0275 Conserved WD40 repeat- 100.0 5.5E-31 1.2E-35 237.9 15.8 291 187-505 211-507 (508)
74 KOG1446 Histone H3 (Lys4) meth 100.0 7.2E-28 1.6E-32 218.9 33.9 288 258-550 8-304 (311)
75 KOG1407 WD40 repeat protein [F 100.0 5.2E-29 1.1E-33 218.8 24.8 281 135-456 14-294 (313)
76 KOG0310 Conserved WD40 repeat- 100.0 1.2E-27 2.7E-32 229.4 33.6 278 349-709 26-306 (487)
77 KOG0313 Microtubule binding pr 100.0 2.9E-28 6.3E-33 225.8 27.5 315 82-420 94-417 (423)
78 KOG0305 Anaphase promoting com 100.0 1.5E-28 3.3E-33 246.4 27.2 275 18-381 183-463 (484)
79 KOG0288 WD40 repeat protein Ti 100.0 9.1E-30 2E-34 238.2 17.1 286 298-608 167-458 (459)
80 KOG0973 Histone transcription 100.0 2.7E-28 5.8E-33 257.5 29.1 289 262-551 11-357 (942)
81 KOG0305 Anaphase promoting com 100.0 4.2E-28 9.1E-33 243.3 28.6 277 310-613 181-463 (484)
82 KOG0973 Histone transcription 100.0 5.2E-28 1.1E-32 255.3 29.0 294 50-380 10-356 (942)
83 KOG0289 mRNA splicing factor [ 100.0 9E-28 2E-32 226.2 27.3 282 190-506 220-505 (506)
84 KOG0274 Cdc4 and related F-box 100.0 1.1E-27 2.4E-32 251.2 31.0 281 305-619 207-490 (537)
85 KOG0289 mRNA splicing factor [ 100.0 1.1E-27 2.4E-32 225.6 26.6 282 307-610 220-505 (506)
86 KOG0640 mRNA cleavage stimulat 100.0 4.6E-28 9.9E-33 217.9 22.7 297 88-420 107-425 (430)
87 KOG0288 WD40 repeat protein Ti 100.0 6.7E-29 1.5E-33 232.5 16.8 282 258-546 169-458 (459)
88 KOG1963 WD40 repeat protein [G 100.0 6.2E-26 1.3E-30 234.2 39.9 460 8-510 12-586 (792)
89 KOG0308 Conserved WD40 repeat- 100.0 2.2E-28 4.8E-33 242.1 21.1 361 146-558 29-402 (735)
90 KOG1445 Tumor-specific antigen 100.0 2.2E-26 4.7E-31 226.8 33.0 529 22-614 42-847 (1012)
91 KOG0641 WD40 repeat protein [G 100.0 8.8E-26 1.9E-30 193.8 32.2 284 263-549 31-349 (350)
92 KOG0300 WD40 repeat-containing 100.0 2.1E-27 4.6E-32 214.3 22.8 339 131-613 138-478 (481)
93 KOG0772 Uncharacterized conser 100.0 3.7E-27 7.9E-32 226.9 25.8 298 180-505 158-485 (641)
94 KOG0641 WD40 repeat protein [G 100.0 2.5E-25 5.4E-30 191.1 33.7 303 87-421 26-349 (350)
95 KOG0277 Peroxisomal targeting 100.0 2.7E-27 5.9E-32 207.2 22.1 279 268-548 12-308 (311)
96 KOG0283 WD40 repeat-containing 100.0 2.6E-27 5.7E-32 243.5 24.9 251 341-614 258-579 (712)
97 KOG0772 Uncharacterized conser 100.0 4.8E-27 1E-31 226.1 24.6 290 297-609 158-485 (641)
98 KOG2096 WD40 repeat protein [G 100.0 1.3E-26 2.8E-31 209.6 25.9 303 134-505 79-400 (420)
99 KOG0268 Sof1-like rRNA process 100.0 2E-28 4.3E-33 225.3 14.3 291 132-469 57-349 (433)
100 KOG0274 Cdc4 and related F-box 100.0 1.4E-26 3.1E-31 242.9 30.1 281 263-557 207-490 (537)
101 KOG0277 Peroxisomal targeting 100.0 4.3E-27 9.4E-32 205.9 21.3 278 56-420 12-308 (311)
102 KOG0294 WD40 repeat-containing 100.0 6.1E-26 1.3E-30 205.3 28.5 244 299-551 36-283 (362)
103 PTZ00421 coronin; Provisional 100.0 1.4E-25 3E-30 235.8 34.8 247 344-613 70-333 (493)
104 KOG0647 mRNA export protein (c 100.0 4.1E-26 9E-31 205.1 25.5 270 304-599 25-311 (347)
105 KOG0308 Conserved WD40 repeat- 100.0 4.7E-27 1E-31 232.8 21.3 341 274-620 35-402 (735)
106 KOG0299 U3 snoRNP-associated p 100.0 4.1E-26 8.9E-31 217.2 26.5 276 299-600 135-444 (479)
107 PTZ00420 coronin; Provisional 100.0 3.6E-25 7.7E-30 233.0 36.4 244 328-593 53-318 (568)
108 KOG0268 Sof1-like rRNA process 100.0 1.4E-27 3E-32 219.8 15.8 289 300-616 60-350 (433)
109 PTZ00421 coronin; Provisional 100.0 3E-25 6.6E-30 233.2 35.1 252 348-620 19-299 (493)
110 KOG1538 Uncharacterized conser 100.0 2.6E-25 5.7E-30 220.5 32.3 406 94-559 13-496 (1081)
111 KOG2096 WD40 repeat protein [G 100.0 1.3E-25 2.8E-30 203.1 27.5 295 258-610 80-401 (420)
112 KOG0647 mRNA export protein (c 100.0 6.4E-26 1.4E-30 204.0 25.1 271 262-538 25-312 (347)
113 KOG0299 U3 snoRNP-associated p 100.0 4.9E-26 1.1E-30 216.7 25.7 305 182-537 135-443 (479)
114 KOG0283 WD40 repeat-containing 99.9 2.8E-26 6E-31 236.1 25.1 289 258-552 260-579 (712)
115 KOG1445 Tumor-specific antigen 99.9 3.8E-25 8.3E-30 218.1 30.9 443 114-612 55-799 (1012)
116 KOG1538 Uncharacterized conser 99.9 3.8E-25 8.2E-30 219.4 30.8 475 14-546 14-521 (1081)
117 KOG0646 WD40 repeat protein [G 99.9 3.2E-26 7E-31 218.4 22.0 295 286-620 18-316 (476)
118 KOG2055 WD40 repeat protein [G 99.9 3.5E-25 7.6E-30 210.8 27.2 287 261-549 210-512 (514)
119 KOG2055 WD40 repeat protein [G 99.9 1.8E-25 3.9E-30 212.7 25.1 285 349-711 213-512 (514)
120 KOG0300 WD40 repeat-containing 99.9 1.2E-25 2.5E-30 203.1 22.1 297 45-381 141-478 (481)
121 KOG0646 WD40 repeat protein [G 99.9 1E-25 2.3E-30 215.0 22.8 250 277-530 51-330 (476)
122 KOG0294 WD40 repeat-containing 99.9 1.2E-24 2.6E-29 197.0 28.2 244 342-613 36-283 (362)
123 KOG1274 WD40 repeat protein [G 99.9 3.4E-21 7.3E-26 199.7 57.0 273 49-366 10-287 (933)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.3E-23 2.7E-28 216.0 38.9 279 277-561 2-291 (300)
125 KOG0639 Transducin-like enhanc 99.9 7.2E-26 1.6E-30 217.1 20.1 280 50-378 417-703 (705)
126 KOG0301 Phospholipase A2-activ 99.9 9.9E-25 2.1E-29 218.3 26.7 282 180-550 5-289 (745)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.3E-23 4.9E-28 214.1 37.7 275 321-621 3-289 (300)
128 KOG1963 WD40 repeat protein [G 99.9 1.3E-22 2.9E-27 209.7 42.6 503 50-618 14-590 (792)
129 KOG0639 Transducin-like enhanc 99.9 2.4E-25 5.1E-30 213.6 20.3 282 260-548 415-703 (705)
130 KOG0301 Phospholipase A2-activ 99.9 3.1E-24 6.8E-29 214.7 28.0 282 296-612 4-289 (745)
131 PTZ00420 coronin; Provisional 99.9 2.3E-23 5E-28 219.5 36.1 247 282-531 50-318 (568)
132 KOG1036 Mitotic spindle checkp 99.9 8.9E-24 1.9E-28 191.3 27.2 269 263-539 12-294 (323)
133 KOG1036 Mitotic spindle checkp 99.9 1.6E-23 3.4E-28 189.7 27.3 270 51-369 12-294 (323)
134 KOG0650 WD40 repeat nucleolar 99.9 2.6E-24 5.7E-29 211.2 23.9 325 46-504 394-732 (733)
135 KOG1273 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 190.3 24.3 282 309-614 26-325 (405)
136 KOG1274 WD40 repeat protein [G 99.9 4.2E-23 9.1E-28 213.6 28.8 273 262-542 11-293 (933)
137 KOG0264 Nucleosome remodeling 99.9 2.1E-23 4.6E-28 199.2 23.2 276 136-508 119-405 (422)
138 KOG1332 Vesicle coat complex C 99.9 9.4E-24 2E-28 184.1 18.9 245 16-294 15-286 (299)
139 KOG0650 WD40 repeat nucleolar 99.9 3.7E-23 7.9E-28 203.3 24.4 329 247-608 383-732 (733)
140 KOG4283 Transcription-coupled 99.9 2.8E-22 6.1E-27 179.7 25.9 298 258-610 37-364 (397)
141 KOG4283 Transcription-coupled 99.9 7E-22 1.5E-26 177.1 27.4 302 184-506 38-364 (397)
142 KOG1273 WD40 repeat protein [G 99.9 6.7E-22 1.5E-26 179.0 27.4 283 192-509 26-324 (405)
143 KOG1332 Vesicle coat complex C 99.9 6.3E-23 1.4E-27 179.0 17.4 252 135-421 5-286 (299)
144 KOG0264 Nucleosome remodeling 99.9 2.4E-22 5.2E-27 192.0 22.9 261 89-379 120-404 (422)
145 KOG0267 Microtubule severing p 99.9 2.8E-24 6E-29 215.9 9.4 255 278-541 6-260 (825)
146 KOG0267 Microtubule severing p 99.9 4.8E-24 1E-28 214.2 10.0 247 329-603 14-260 (825)
147 KOG4378 Nuclear protein COP1 [ 99.9 4.4E-22 9.4E-27 191.2 22.8 294 279-593 5-305 (673)
148 KOG0269 WD40 repeat-containing 99.9 9.6E-23 2.1E-27 206.7 17.9 283 308-613 41-342 (839)
149 COG2319 FOG: WD40 repeat [Gene 99.9 5.6E-19 1.2E-23 193.4 48.2 372 184-612 60-443 (466)
150 PF04192 Utp21: Utp21 specific 99.9 3.1E-23 6.7E-28 192.3 11.6 174 674-855 48-237 (237)
151 KOG0321 WD40 repeat-containing 99.9 1.6E-21 3.4E-26 193.6 22.9 422 58-529 55-552 (720)
152 COG2319 FOG: WD40 repeat [Gene 99.9 1.5E-18 3.2E-23 190.1 48.4 374 136-550 60-443 (466)
153 KOG0321 WD40 repeat-containing 99.9 2.9E-21 6.3E-26 191.7 23.1 274 276-551 64-393 (720)
154 KOG0269 WD40 repeat-containing 99.9 6.5E-22 1.4E-26 200.8 18.4 283 266-551 41-342 (839)
155 KOG4328 WD40 protein [Function 99.9 6.8E-21 1.5E-25 181.7 24.1 299 134-465 179-495 (498)
156 KOG2445 Nuclear pore complex c 99.9 2.6E-20 5.6E-25 168.5 25.5 265 346-612 10-319 (361)
157 KOG1912 WD40 repeat protein [G 99.9 2.5E-19 5.3E-24 181.9 35.2 513 7-561 8-711 (1062)
158 KOG1009 Chromatin assembly com 99.9 3E-20 6.5E-25 174.7 25.2 163 51-224 12-195 (434)
159 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-20 3.5E-25 180.5 22.5 294 107-446 5-305 (673)
160 KOG4328 WD40 protein [Function 99.9 3.9E-20 8.4E-25 176.6 24.8 302 291-612 171-496 (498)
161 KOG1009 Chromatin assembly com 99.9 8.7E-20 1.9E-24 171.7 26.8 335 188-616 12-377 (434)
162 KOG1034 Transcriptional repres 99.9 9.6E-21 2.1E-25 172.8 19.7 318 259-611 33-383 (385)
163 KOG4497 Uncharacterized conser 99.9 1.4E-20 3.1E-25 171.5 19.6 380 98-542 13-425 (447)
164 KOG1034 Transcriptional repres 99.9 4.9E-20 1.1E-24 168.3 21.9 297 184-507 33-383 (385)
165 KOG2445 Nuclear pore complex c 99.9 4.9E-19 1.1E-23 160.4 26.8 264 46-337 7-318 (361)
166 KOG4497 Uncharacterized conser 99.9 1.1E-19 2.3E-24 165.9 22.2 340 18-414 14-425 (447)
167 KOG1524 WD40 repeat-containing 99.9 4.6E-19 1E-23 172.3 27.0 437 24-550 77-524 (737)
168 KOG0302 Ribosome Assembly prot 99.9 1.2E-19 2.5E-24 168.9 21.5 241 305-547 150-436 (440)
169 KOG2919 Guanine nucleotide-bin 99.8 4E-19 8.7E-24 161.9 24.0 272 308-602 51-361 (406)
170 KOG0270 WD40 repeat-containing 99.8 1.6E-19 3.5E-24 171.9 22.4 295 96-426 128-454 (463)
171 KOG2919 Guanine nucleotide-bin 99.8 4.8E-19 1E-23 161.4 24.1 285 191-498 51-361 (406)
172 KOG0322 G-protein beta subunit 99.8 1.8E-19 3.9E-24 159.4 18.1 288 180-506 5-322 (323)
173 KOG4547 WD40 repeat-containing 99.8 2.4E-18 5.2E-23 170.9 27.9 474 316-841 3-517 (541)
174 KOG0270 WD40 repeat-containing 99.8 2.5E-19 5.3E-24 170.7 18.2 235 317-554 191-454 (463)
175 KOG0307 Vesicle coat complex C 99.8 3.9E-20 8.4E-25 197.2 13.5 284 268-552 10-330 (1049)
176 PF02239 Cytochrom_D1: Cytochr 99.8 7.2E-17 1.6E-21 164.5 36.8 322 277-621 6-357 (369)
177 KOG0307 Vesicle coat complex C 99.8 6E-20 1.3E-24 195.7 14.0 290 56-382 10-330 (1049)
178 KOG2110 Uncharacterized conser 99.8 5.1E-17 1.1E-21 151.5 30.3 238 350-614 6-251 (391)
179 KOG0302 Ribosome Assembly prot 99.8 1.6E-18 3.4E-23 161.5 20.0 251 92-376 150-435 (440)
180 KOG0649 WD40 repeat protein [G 99.8 2.9E-17 6.2E-22 143.7 25.9 271 266-546 12-313 (325)
181 KOG1188 WD40 repeat protein [G 99.8 8.7E-19 1.9E-23 161.2 17.1 251 362-612 41-347 (376)
182 PRK11028 6-phosphogluconolacto 99.8 1.7E-16 3.7E-21 163.7 36.4 276 69-379 7-304 (330)
183 KOG0322 G-protein beta subunit 99.8 6.3E-19 1.4E-23 156.0 15.3 287 298-610 6-322 (323)
184 KOG2110 Uncharacterized conser 99.8 1.1E-16 2.3E-21 149.4 30.2 296 308-612 7-331 (391)
185 COG4946 Uncharacterized protei 99.8 6.2E-15 1.3E-19 141.9 42.9 425 22-538 49-507 (668)
186 PRK11028 6-phosphogluconolacto 99.8 1.1E-16 2.3E-21 165.2 33.9 267 280-549 6-304 (330)
187 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 162.4 24.8 346 139-561 12-360 (737)
188 KOG4227 WD40 repeat protein [G 99.8 6.3E-18 1.4E-22 157.8 20.5 317 134-507 49-387 (609)
189 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-18 3E-23 170.8 16.4 259 301-561 289-573 (577)
190 KOG1523 Actin-related protein 99.8 3.5E-17 7.5E-22 149.5 23.5 233 92-361 9-261 (361)
191 KOG1007 WD repeat protein TSSC 99.8 2.2E-17 4.7E-22 148.2 20.9 261 18-294 69-361 (370)
192 KOG1517 Guanine nucleotide bin 99.8 2.5E-17 5.5E-22 173.2 24.1 290 308-614 1066-1384(1387)
193 PF02239 Cytochrom_D1: Cytochr 99.8 1E-15 2.2E-20 156.1 35.5 317 30-388 14-356 (369)
194 KOG1007 WD repeat protein TSSC 99.8 2.9E-17 6.3E-22 147.5 20.5 269 31-337 39-361 (370)
195 KOG0642 Cell-cycle nuclear pro 99.8 4.4E-18 9.6E-23 167.3 16.7 274 131-429 284-569 (577)
196 KOG0290 Conserved WD40 repeat- 99.8 1.1E-16 2.4E-21 143.9 23.9 279 264-545 44-361 (364)
197 KOG1912 WD40 repeat protein [G 99.8 5.1E-16 1.1E-20 158.2 30.8 417 92-553 14-555 (1062)
198 KOG0644 Uncharacterized conser 99.8 1E-18 2.2E-23 178.9 11.6 285 46-383 184-472 (1113)
199 PRK01742 tolB translocation pr 99.8 4.4E-17 9.6E-22 172.9 24.0 233 32-317 184-426 (429)
200 KOG1188 WD40 repeat protein [G 99.8 2.5E-17 5.4E-22 151.8 18.1 283 25-336 42-345 (376)
201 KOG4227 WD40 repeat protein [G 99.8 1.1E-16 2.4E-21 149.6 22.5 296 46-378 50-386 (609)
202 KOG0649 WD40 repeat protein [G 99.8 3.7E-16 8E-21 136.8 24.2 231 351-611 12-274 (325)
203 KOG0771 Prolactin regulatory e 99.8 7.1E-17 1.5E-21 153.7 21.1 196 353-549 148-354 (398)
204 KOG1587 Cytoplasmic dynein int 99.8 5.7E-16 1.2E-20 161.6 29.3 282 74-380 222-517 (555)
205 KOG1587 Cytoplasmic dynein int 99.8 1.8E-16 3.9E-21 165.3 25.1 264 329-613 222-518 (555)
206 KOG2139 WD40 repeat protein [G 99.8 1.1E-15 2.4E-20 142.0 26.1 304 265-611 99-431 (445)
207 KOG2111 Uncharacterized conser 99.7 5.8E-15 1.2E-19 135.2 29.7 237 308-552 7-259 (346)
208 KOG1240 Protein kinase contain 99.7 1.5E-15 3.4E-20 162.8 30.1 277 338-616 1037-1339(1431)
209 KOG1310 WD40 repeat protein [G 99.7 2E-16 4.3E-21 154.7 21.2 244 45-294 43-303 (758)
210 KOG0644 Uncharacterized conser 99.7 5E-18 1.1E-22 173.9 10.6 285 257-554 183-473 (1113)
211 KOG1240 Protein kinase contain 99.7 4.3E-16 9.2E-21 167.0 25.4 345 133-505 1040-1431(1431)
212 KOG0303 Actin-binding protein 99.7 1.1E-15 2.3E-20 143.7 24.1 239 181-488 73-320 (472)
213 KOG2041 WD40 repeat protein [G 99.7 2.8E-13 6.2E-18 137.1 42.9 471 92-622 13-543 (1189)
214 KOG2315 Predicted translation 99.7 5.4E-15 1.2E-19 146.0 29.6 335 16-402 38-411 (566)
215 COG4946 Uncharacterized protei 99.7 1.5E-12 3.3E-17 125.7 45.1 437 51-600 35-507 (668)
216 KOG0303 Actin-binding protein 99.7 4E-16 8.6E-21 146.5 20.3 206 345-553 77-298 (472)
217 KOG0771 Prolactin regulatory e 99.7 1.1E-15 2.4E-20 145.6 22.9 196 310-508 148-355 (398)
218 KOG0974 WD-repeat protein WDR6 99.7 6.8E-14 1.5E-18 148.6 38.0 223 24-294 18-288 (967)
219 KOG1523 Actin-related protein 99.7 4E-15 8.6E-20 136.2 24.9 232 302-535 6-265 (361)
220 PRK01742 tolB translocation pr 99.7 1.4E-15 3E-20 161.6 25.2 234 285-530 183-426 (429)
221 PRK03629 tolB translocation pr 99.7 2.7E-15 5.8E-20 158.7 26.9 232 33-316 180-427 (429)
222 KOG2315 Predicted translation 99.7 9.2E-14 2E-18 137.4 34.2 366 26-487 5-410 (566)
223 KOG1272 WD40-repeat-containing 99.7 3.3E-17 7.2E-22 157.0 9.9 274 302-603 125-401 (545)
224 KOG2041 WD40 repeat protein [G 99.7 1.8E-14 4E-19 145.5 29.7 528 1-610 1-618 (1189)
225 PF04762 IKI3: IKI3 family; I 99.7 1.8E-10 4E-15 130.9 64.9 476 51-611 74-639 (928)
226 KOG0290 Conserved WD40 repeat- 99.7 6.1E-15 1.3E-19 132.9 22.8 289 52-375 44-361 (364)
227 KOG2139 WD40 repeat protein [G 99.7 2.3E-15 4.9E-20 139.9 20.7 252 350-603 99-367 (445)
228 KOG1517 Guanine nucleotide bin 99.7 3.4E-15 7.4E-20 157.6 24.1 286 191-510 1066-1384(1387)
229 KOG2111 Uncharacterized conser 99.7 1.8E-14 3.9E-19 132.0 24.8 235 352-613 8-258 (346)
230 COG5354 Uncharacterized protei 99.7 2.1E-13 4.5E-18 133.2 33.1 374 28-499 7-421 (561)
231 KOG2394 WD40 protein DMR-N9 [G 99.7 2.8E-15 6.1E-20 146.6 19.5 236 310-563 127-376 (636)
232 KOG1334 WD40 repeat protein [G 99.7 5.6E-16 1.2E-20 149.7 13.7 295 92-422 141-467 (559)
233 PRK05137 tolB translocation pr 99.7 2.2E-14 4.9E-19 153.0 27.5 231 33-316 183-432 (435)
234 KOG1334 WD40 repeat protein [G 99.7 1E-15 2.2E-20 148.0 14.8 309 46-382 136-469 (559)
235 PRK03629 tolB translocation pr 99.7 2.7E-14 5.9E-19 151.0 26.9 233 75-359 180-427 (429)
236 PRK04922 tolB translocation pr 99.7 1.4E-14 2.9E-19 154.4 24.7 232 33-316 185-432 (433)
237 COG5354 Uncharacterized protei 99.7 1.4E-13 3.1E-18 134.2 28.8 351 2-413 21-421 (561)
238 KOG0974 WD-repeat protein WDR6 99.7 1.7E-11 3.7E-16 130.7 45.9 183 22-225 99-289 (967)
239 PRK02889 tolB translocation pr 99.7 4.3E-14 9.4E-19 149.8 26.8 235 32-316 176-424 (427)
240 KOG1272 WD40-repeat-containing 99.6 1.7E-15 3.8E-20 145.4 11.9 285 38-374 115-404 (545)
241 KOG2394 WD40 protein DMR-N9 [G 99.6 3.6E-14 7.7E-19 139.1 21.0 252 95-400 125-383 (636)
242 PF04003 Utp12: Dip2/Utp12 Fam 99.6 1.4E-15 3E-20 126.5 9.8 107 750-856 1-109 (110)
243 TIGR02658 TTQ_MADH_Hv methylam 99.6 6.1E-12 1.3E-16 124.7 36.5 264 286-619 27-338 (352)
244 KOG2321 WD40 repeat protein [G 99.6 1.3E-13 2.9E-18 136.2 24.5 281 263-550 50-344 (703)
245 PRK02889 tolB translocation pr 99.6 1E-13 2.2E-18 147.1 25.8 239 74-360 176-425 (427)
246 KOG2321 WD40 repeat protein [G 99.6 1.6E-13 3.5E-18 135.6 24.8 280 307-613 52-345 (703)
247 KOG2314 Translation initiation 99.6 9.1E-13 2E-17 129.8 29.6 346 34-498 192-558 (698)
248 PF10282 Lactonase: Lactonase, 99.6 3.7E-11 7.9E-16 123.7 42.8 279 279-557 2-332 (345)
249 PRK05137 tolB translocation pr 99.6 2.1E-13 4.6E-18 145.5 27.0 233 74-359 182-432 (435)
250 PRK04922 tolB translocation pr 99.6 2.2E-13 4.7E-18 145.2 25.8 234 74-359 184-432 (433)
251 PF10282 Lactonase: Lactonase, 99.6 5.5E-11 1.2E-15 122.4 41.6 244 264-507 36-322 (345)
252 PF08662 eIF2A: Eukaryotic tra 99.6 2.1E-13 4.5E-18 126.0 20.7 157 438-620 9-187 (194)
253 KOG1310 WD40 repeat protein [G 99.6 2.7E-14 5.8E-19 140.0 15.4 235 383-620 42-312 (758)
254 PF04762 IKI3: IKI3 family; I 99.6 5.5E-10 1.2E-14 127.1 52.3 422 140-612 74-565 (928)
255 TIGR02658 TTQ_MADH_Hv methylam 99.6 2E-11 4.3E-16 121.1 35.0 275 32-345 27-338 (352)
256 TIGR02800 propeller_TolB tol-p 99.6 6.5E-13 1.4E-17 142.6 26.2 218 33-302 171-404 (417)
257 COG2706 3-carboxymuconate cycl 99.6 4E-11 8.6E-16 113.3 33.6 298 31-358 15-345 (346)
258 PRK04792 tolB translocation pr 99.5 1.4E-12 2.9E-17 138.7 25.5 232 33-316 199-446 (448)
259 KOG2314 Translation initiation 99.5 4.5E-12 9.8E-17 125.0 26.5 308 16-371 214-559 (698)
260 KOG3881 Uncharacterized conser 99.5 1.1E-12 2.3E-17 124.0 21.2 258 265-529 56-341 (412)
261 PRK00178 tolB translocation pr 99.5 1.8E-12 3.8E-17 139.1 26.1 232 33-316 180-427 (430)
262 PRK01029 tolB translocation pr 99.5 4.8E-12 1E-16 133.3 28.5 242 33-317 166-425 (428)
263 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.6E-17 122.8 21.5 252 307-562 56-333 (412)
264 KOG1409 Uncharacterized conser 99.5 6.7E-13 1.5E-17 123.0 18.4 337 133-508 16-395 (404)
265 PF08662 eIF2A: Eukaryotic tra 99.5 1.2E-12 2.6E-17 120.9 19.6 146 17-173 10-181 (194)
266 KOG1354 Serine/threonine prote 99.5 2.6E-12 5.6E-17 119.1 20.4 325 92-462 24-431 (433)
267 PRK01029 tolB translocation pr 99.5 3.8E-11 8.3E-16 126.5 30.1 226 329-557 165-411 (428)
268 PRK00178 tolB translocation pr 99.5 1E-11 2.2E-16 133.2 26.2 233 75-359 180-427 (430)
269 PRK04792 tolB translocation pr 99.5 1.1E-11 2.4E-16 131.7 26.0 233 75-359 199-446 (448)
270 TIGR03300 assembly_YfgL outer 99.5 1.4E-10 3E-15 122.2 32.9 299 275-608 64-376 (377)
271 TIGR02800 propeller_TolB tol-p 99.5 1.7E-11 3.6E-16 131.8 26.3 230 74-355 170-414 (417)
272 COG2706 3-carboxymuconate cycl 99.5 1.6E-09 3.4E-14 102.7 35.0 293 162-486 15-345 (346)
273 KOG1354 Serine/threonine prote 99.4 6.6E-11 1.4E-15 109.9 23.2 278 141-424 25-362 (433)
274 KOG1409 Uncharacterized conser 99.4 3.2E-11 7E-16 112.1 20.4 331 181-550 16-395 (404)
275 TIGR03300 assembly_YfgL outer 99.4 1E-09 2.2E-14 115.7 34.2 293 208-546 67-376 (377)
276 KOG4547 WD40 repeat-containing 99.3 2.7E-10 5.8E-15 114.4 21.8 203 208-422 7-221 (541)
277 PRK04043 tolB translocation pr 99.3 2E-09 4.4E-14 112.5 28.0 208 32-293 169-399 (419)
278 PLN02919 haloacid dehalogenase 99.3 9.5E-09 2.1E-13 119.7 34.4 240 310-553 571-892 (1057)
279 PF15492 Nbas_N: Neuroblastoma 99.2 1.9E-08 4.1E-13 92.6 27.2 255 99-390 3-270 (282)
280 PF15492 Nbas_N: Neuroblastoma 99.2 1.7E-08 3.6E-13 92.9 26.4 242 18-306 3-271 (282)
281 PLN02919 haloacid dehalogenase 99.2 1.8E-08 3.9E-13 117.5 33.9 254 353-616 571-893 (1057)
282 PRK11138 outer membrane biogen 99.2 3.4E-08 7.5E-13 104.3 32.9 303 275-610 68-393 (394)
283 PRK04043 tolB translocation pr 99.2 2.9E-08 6.2E-13 103.9 29.8 214 286-509 169-402 (419)
284 KOG1064 RAVE (regulator of V-A 99.2 1E-10 2.2E-15 131.1 11.8 226 362-623 2181-2410(2439)
285 KOG0280 Uncharacterized conser 99.2 1.4E-08 3E-13 92.9 23.3 265 284-551 44-335 (339)
286 PRK11138 outer membrane biogen 99.1 7.6E-08 1.6E-12 101.7 31.0 306 208-548 71-393 (394)
287 KOG4532 WD40-like repeat conta 99.1 1.5E-08 3.3E-13 91.2 20.3 258 32-338 52-332 (344)
288 KOG4190 Uncharacterized conser 99.1 5.5E-10 1.2E-14 110.3 10.5 215 342-559 728-958 (1034)
289 KOG0882 Cyclophilin-related pe 99.1 3.2E-09 6.9E-14 102.7 15.1 274 347-622 7-316 (558)
290 PF00930 DPPIV_N: Dipeptidyl p 99.1 2.7E-07 5.8E-12 95.5 30.7 302 21-369 1-347 (353)
291 PF07433 DUF1513: Protein of u 99.1 4.2E-07 9.1E-12 86.9 28.6 231 266-500 6-278 (305)
292 KOG0309 Conserved WD40 repeat- 99.1 2.3E-09 5E-14 109.9 14.0 292 307-613 25-341 (1081)
293 PF07433 DUF1513: Protein of u 99.1 5.9E-07 1.3E-11 86.0 29.0 246 308-602 6-277 (305)
294 KOG4532 WD40-like repeat conta 99.1 8.7E-08 1.9E-12 86.5 22.0 203 403-621 84-292 (344)
295 KOG2114 Vacuolar assembly/sort 99.0 3.7E-07 8E-12 96.4 29.8 200 356-558 30-252 (933)
296 PF13360 PQQ_2: PQQ-like domai 99.0 1.6E-07 3.5E-12 92.2 26.3 221 328-556 2-237 (238)
297 KOG0882 Cyclophilin-related pe 99.0 1.1E-08 2.4E-13 99.0 17.0 255 187-474 7-314 (558)
298 PF13360 PQQ_2: PQQ-like domai 99.0 2.1E-07 4.6E-12 91.3 26.7 218 370-617 2-236 (238)
299 PF08450 SGL: SMP-30/Gluconola 99.0 1.4E-06 3E-11 85.5 32.2 219 268-495 3-243 (246)
300 PF08450 SGL: SMP-30/Gluconola 99.0 1.6E-06 3.5E-11 85.1 32.5 219 311-538 4-244 (246)
301 KOG0280 Uncharacterized conser 99.0 1E-07 2.2E-12 87.3 21.5 157 266-423 123-286 (339)
302 KOG1064 RAVE (regulator of V-A 99.0 1.8E-09 3.9E-14 121.6 12.0 225 154-433 2181-2410(2439)
303 KOG3617 WD40 and TPR repeat-co 99.0 4.1E-08 8.8E-13 102.6 20.8 111 55-173 18-133 (1416)
304 KOG4649 PQQ (pyrrolo-quinoline 99.0 4E-06 8.7E-11 75.8 29.8 143 276-421 23-165 (354)
305 KOG4190 Uncharacterized conser 99.0 2.5E-09 5.4E-14 105.8 10.4 284 299-607 728-1032(1034)
306 KOG0309 Conserved WD40 repeat- 99.0 7.4E-09 1.6E-13 106.3 13.9 294 90-422 21-340 (1081)
307 PF06433 Me-amine-dh_H: Methyl 99.0 1.4E-06 3.1E-11 84.3 28.2 277 32-347 17-330 (342)
308 PF00930 DPPIV_N: Dipeptidyl p 98.9 1.2E-06 2.5E-11 90.8 29.4 299 61-409 1-345 (353)
309 KOG4649 PQQ (pyrrolo-quinoline 98.9 8E-06 1.7E-10 73.9 29.4 300 208-551 25-353 (354)
310 KOG4714 Nucleoporin [Nuclear s 98.9 2.1E-08 4.6E-13 90.0 13.0 201 402-609 100-316 (319)
311 PRK02888 nitrous-oxide reducta 98.9 1.3E-06 2.8E-11 91.7 28.1 262 279-550 69-405 (635)
312 KOG3914 WD repeat protein WDR4 98.9 2.7E-08 5.9E-13 95.4 14.0 165 266-432 64-234 (390)
313 KOG3914 WD repeat protein WDR4 98.9 3.9E-08 8.5E-13 94.3 14.0 164 394-561 65-235 (390)
314 KOG1897 Damage-specific DNA bi 98.9 0.00032 7E-09 76.2 48.9 452 17-549 453-942 (1096)
315 KOG1832 HIV-1 Vpr-binding prot 98.9 2.2E-09 4.8E-14 112.3 5.1 201 343-560 1095-1302(1516)
316 COG5170 CDC55 Serine/threonine 98.9 1.1E-07 2.4E-12 87.5 15.4 252 349-611 26-367 (460)
317 PF06433 Me-amine-dh_H: Methyl 98.8 2.4E-05 5.2E-10 76.1 31.0 264 329-620 17-329 (342)
318 KOG1920 IkappaB kinase complex 98.8 0.00024 5.2E-09 79.0 41.8 245 52-335 68-363 (1265)
319 PRK02888 nitrous-oxide reducta 98.8 1E-05 2.3E-10 85.1 29.6 214 273-497 201-451 (635)
320 COG5170 CDC55 Serine/threonine 98.8 5.7E-07 1.2E-11 83.0 17.6 274 141-420 26-366 (460)
321 cd00216 PQQ_DH Dehydrogenases 98.8 1.5E-05 3.2E-10 86.3 31.2 277 276-561 61-436 (488)
322 cd00216 PQQ_DH Dehydrogenases 98.7 2.6E-05 5.6E-10 84.5 31.5 276 208-516 63-433 (488)
323 KOG2695 WD40 repeat protein [G 98.7 7E-08 1.5E-12 90.4 8.8 146 458-623 235-388 (425)
324 PF14583 Pectate_lyase22: Olig 98.6 6.5E-05 1.4E-09 74.6 28.4 272 17-336 40-380 (386)
325 KOG1920 IkappaB kinase complex 98.6 5.7E-05 1.2E-09 83.7 30.6 261 141-420 68-364 (1265)
326 KOG2114 Vacuolar assembly/sort 98.6 1E-05 2.2E-10 85.9 23.4 207 271-480 30-259 (933)
327 KOG1275 PAB-dependent poly(A) 98.6 1.1E-06 2.4E-11 93.3 15.5 183 402-609 146-340 (1118)
328 PF00400 WD40: WD domain, G-be 98.6 2E-07 4.4E-12 60.5 6.0 39 467-505 1-39 (39)
329 KOG1897 Damage-specific DNA bi 98.6 0.0025 5.5E-08 69.6 49.1 529 56-617 261-862 (1096)
330 KOG4714 Nucleoporin [Nuclear s 98.6 3.2E-06 7E-11 76.3 15.3 154 354-508 94-255 (319)
331 PF00400 WD40: WD domain, G-be 98.6 3.7E-07 8E-12 59.2 7.1 38 132-169 2-39 (39)
332 KOG1832 HIV-1 Vpr-binding prot 98.6 4.1E-08 8.8E-13 103.1 3.7 277 258-599 1095-1377(1516)
333 KOG1645 RING-finger-containing 98.5 5.7E-06 1.2E-10 79.7 16.9 257 288-549 175-461 (463)
334 KOG1275 PAB-dependent poly(A) 98.5 6.1E-06 1.3E-10 87.9 18.6 180 318-505 147-340 (1118)
335 KOG1645 RING-finger-containing 98.5 8.4E-06 1.8E-10 78.6 17.7 265 34-337 175-461 (463)
336 KOG3621 WD40 repeat-containing 98.5 4.6E-05 9.9E-10 79.4 23.5 136 264-400 33-179 (726)
337 KOG3617 WD40 and TPR repeat-co 98.5 1.1E-05 2.3E-10 85.2 19.0 267 265-547 16-331 (1416)
338 PF14583 Pectate_lyase22: Olig 98.5 0.00073 1.6E-08 67.4 30.6 272 271-547 42-379 (386)
339 KOG2695 WD40 repeat protein [G 98.5 7.8E-07 1.7E-11 83.6 8.9 146 22-173 224-378 (425)
340 PF11768 DUF3312: Protein of u 98.4 0.00092 2E-08 69.1 31.3 75 347-423 257-331 (545)
341 COG3391 Uncharacterized conser 98.4 0.0011 2.5E-08 69.1 32.6 271 288-562 13-296 (381)
342 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.00069 1.5E-08 73.6 31.9 280 318-622 69-501 (527)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 0.0016 3.6E-08 70.7 34.6 281 276-562 69-503 (527)
344 COG3391 Uncharacterized conser 98.4 0.0011 2.4E-08 69.2 31.7 268 331-621 13-293 (381)
345 PF11768 DUF3312: Protein of u 98.4 0.00098 2.1E-08 68.9 29.8 139 75-230 185-335 (545)
346 COG0823 TolB Periplasmic compo 98.4 2.5E-05 5.4E-10 81.3 19.1 162 33-215 174-346 (425)
347 COG0823 TolB Periplasmic compo 98.3 8E-05 1.7E-09 77.6 21.4 205 287-497 174-389 (425)
348 PF04053 Coatomer_WDAD: Coatom 98.3 0.00067 1.5E-08 71.0 27.9 220 349-613 32-264 (443)
349 PF08596 Lgl_C: Lethal giant l 98.3 0.00043 9.3E-09 71.5 25.9 286 54-369 3-326 (395)
350 KOG2066 Vacuolar assembly/sort 98.3 2E-05 4.3E-10 83.2 16.0 146 446-623 49-199 (846)
351 PF02897 Peptidase_S9_N: Proly 98.3 0.0016 3.4E-08 69.8 30.9 244 352-616 126-409 (414)
352 PF08596 Lgl_C: Lethal giant l 98.3 0.00044 9.5E-09 71.4 25.2 290 266-602 3-327 (395)
353 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0027 5.9E-08 66.7 30.7 262 269-559 33-324 (410)
354 PRK13616 lipoprotein LpqB; Pro 98.2 9.6E-05 2.1E-09 80.5 20.4 186 14-220 351-564 (591)
355 KOG3621 WD40 repeat-containing 98.2 0.00015 3.2E-09 75.8 20.2 115 307-422 34-155 (726)
356 PF06977 SdiA-regulated: SdiA- 98.2 0.002 4.3E-08 61.5 25.7 208 386-608 16-247 (248)
357 KOG2066 Vacuolar assembly/sort 98.2 0.00014 3E-09 77.1 18.8 188 391-611 39-233 (846)
358 PF04053 Coatomer_WDAD: Coatom 98.2 0.0014 3E-08 68.8 26.4 223 305-551 31-264 (443)
359 PF00780 CNH: CNH domain; Int 98.2 0.0034 7.3E-08 62.9 28.6 228 359-622 5-266 (275)
360 PF04841 Vps16_N: Vps16, N-ter 98.2 0.005 1.1E-07 64.8 30.6 244 330-620 62-323 (410)
361 PF06977 SdiA-regulated: SdiA- 98.2 0.004 8.8E-08 59.4 26.7 200 302-504 17-247 (248)
362 PF00780 CNH: CNH domain; Int 98.1 0.0034 7.4E-08 62.9 26.9 229 316-561 5-267 (275)
363 PRK13616 lipoprotein LpqB; Pro 98.1 0.00082 1.8E-08 73.4 23.2 156 50-224 347-525 (591)
364 PF02897 Peptidase_S9_N: Proly 98.0 0.0051 1.1E-07 65.9 28.5 250 55-342 126-409 (414)
365 PF03178 CPSF_A: CPSF A subuni 98.0 0.0027 5.9E-08 65.1 23.8 177 32-225 2-203 (321)
366 PF03178 CPSF_A: CPSF A subuni 97.9 0.0044 9.6E-08 63.5 24.1 173 371-549 2-202 (321)
367 PF08625 Utp13: Utp13 specific 97.9 0.00011 2.4E-09 62.6 10.1 121 732-854 6-137 (141)
368 COG3386 Gluconolactonase [Carb 97.8 0.012 2.7E-07 58.4 24.8 200 356-561 31-254 (307)
369 COG3386 Gluconolactonase [Carb 97.8 0.0098 2.1E-07 59.1 24.0 222 312-539 30-275 (307)
370 COG3490 Uncharacterized protei 97.8 0.0097 2.1E-07 55.6 21.0 234 268-505 71-346 (366)
371 PF08553 VID27: VID27 cytoplas 97.7 0.0038 8.2E-08 69.2 20.9 142 319-464 494-646 (794)
372 PF08553 VID27: VID27 cytoplas 97.7 0.0011 2.4E-08 73.2 16.2 134 411-548 502-646 (794)
373 PF09384 UTP15_C: UTP15 C term 97.7 0.00041 8.9E-09 60.3 10.5 117 727-844 22-140 (148)
374 PF14655 RAB3GAP2_N: Rab3 GTPa 97.7 0.021 4.7E-07 58.8 24.4 89 257-345 300-406 (415)
375 COG3204 Uncharacterized protei 97.6 0.02 4.4E-07 54.1 21.1 173 387-561 81-274 (316)
376 TIGR03074 PQQ_membr_DH membran 97.6 0.19 4.2E-06 56.9 33.8 194 318-513 194-483 (764)
377 COG3490 Uncharacterized protei 97.6 0.025 5.4E-07 52.9 21.3 267 82-377 56-346 (366)
378 PF05694 SBP56: 56kDa selenium 97.6 0.094 2E-06 53.2 27.3 222 317-538 86-392 (461)
379 KOG1008 Uncharacterized conser 97.6 2.3E-05 4.9E-10 80.4 2.1 207 51-294 55-275 (783)
380 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.0087 1.9E-07 61.6 20.5 104 517-623 305-410 (415)
381 KOG4499 Ca2+-binding protein R 97.6 0.035 7.5E-07 50.4 21.2 231 15-325 17-273 (310)
382 KOG1898 Splicing factor 3b, su 97.6 0.2 4.3E-06 56.0 39.1 173 372-549 854-1048(1205)
383 PF10647 Gmad1: Lipoprotein Lp 97.5 0.022 4.7E-07 55.6 21.3 146 14-162 25-186 (253)
384 KOG4640 Anaphase-promoting com 97.5 0.00042 9.2E-09 71.6 9.6 91 53-150 21-114 (665)
385 PF05096 Glu_cyclase_2: Glutam 97.5 0.1 2.2E-06 49.7 24.8 196 394-600 47-249 (264)
386 KOG1008 Uncharacterized conser 97.5 4.5E-05 9.7E-10 78.4 1.9 195 351-549 58-275 (783)
387 PF14727 PHTB1_N: PTHB1 N-term 97.5 0.18 4E-06 52.3 32.4 295 63-380 36-361 (418)
388 PF10647 Gmad1: Lipoprotein Lp 97.5 0.093 2E-06 51.2 24.5 151 54-215 25-186 (253)
389 PF15390 DUF4613: Domain of un 97.4 0.26 5.6E-06 51.7 29.1 163 142-338 20-187 (671)
390 COG3204 Uncharacterized protei 97.4 0.082 1.8E-06 50.2 21.0 170 50-226 83-265 (316)
391 PF14870 PSII_BNR: Photosynthe 97.3 0.24 5.2E-06 49.1 28.9 277 188-504 15-301 (302)
392 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.032 6.8E-07 44.7 14.6 100 55-166 2-109 (111)
393 PHA02713 hypothetical protein; 97.2 0.026 5.7E-07 62.2 19.7 219 330-554 273-538 (557)
394 PRK10115 protease 2; Provision 97.2 0.63 1.4E-05 52.9 33.9 240 308-552 128-397 (686)
395 KOG4640 Anaphase-promoting com 97.2 0.0019 4E-08 67.0 9.5 94 349-443 20-114 (665)
396 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.04 8.8E-07 44.1 14.7 100 480-606 2-109 (111)
397 KOG2395 Protein involved in va 97.2 0.033 7.1E-07 56.9 17.5 145 316-465 343-500 (644)
398 KOG4441 Proteins containing BT 97.1 0.037 8E-07 60.9 19.6 217 329-552 301-549 (571)
399 smart00320 WD40 WD40 repeats. 97.1 0.0012 2.5E-08 42.2 5.3 39 467-505 2-40 (40)
400 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.4E-08 41.6 5.7 37 133-169 4-40 (40)
401 KOG4499 Ca2+-binding protein R 97.1 0.2 4.4E-06 45.6 19.8 133 267-402 111-264 (310)
402 PF07995 GSDH: Glucose / Sorbo 97.1 0.46 1E-05 48.6 29.3 108 54-163 3-135 (331)
403 KOG2444 WD40 repeat protein [G 97.0 0.00088 1.9E-08 60.4 4.9 107 402-509 69-179 (238)
404 KOG4441 Proteins containing BT 97.0 0.064 1.4E-06 59.0 20.2 231 359-615 283-550 (571)
405 PRK10115 protease 2; Provision 97.0 0.96 2.1E-05 51.5 33.8 239 266-510 128-397 (686)
406 KOG2444 WD40 repeat protein [G 97.0 0.0012 2.6E-08 59.5 5.2 141 405-549 32-177 (238)
407 KOG2079 Vacuolar assembly/sort 97.0 0.0072 1.6E-07 66.9 11.7 108 310-420 91-202 (1206)
408 TIGR03074 PQQ_membr_DH membran 96.9 0.41 8.8E-06 54.4 25.4 205 403-621 194-487 (764)
409 KOG2395 Protein involved in va 96.9 0.13 2.8E-06 52.9 18.9 145 63-225 344-501 (644)
410 PF15390 DUF4613: Domain of un 96.9 0.82 1.8E-05 48.2 30.5 118 50-173 54-188 (671)
411 PHA02713 hypothetical protein; 96.8 0.084 1.8E-06 58.3 18.9 219 287-510 273-536 (557)
412 PF14870 PSII_BNR: Photosynthe 96.5 1 2.2E-05 44.7 29.1 278 92-418 15-301 (302)
413 PRK13684 Ycf48-like protein; P 96.5 1.2 2.7E-05 45.6 27.8 150 349-505 172-329 (334)
414 COG5276 Uncharacterized conser 96.5 0.86 1.9E-05 43.4 28.1 271 307-610 87-368 (370)
415 PF05096 Glu_cyclase_2: Glutam 96.4 0.92 2E-05 43.4 26.3 194 297-496 34-249 (264)
416 COG3823 Glutamine cyclotransfe 96.4 0.36 7.7E-06 43.3 15.7 185 402-599 55-247 (262)
417 KOG2079 Vacuolar assembly/sort 96.3 0.018 3.8E-07 64.0 9.1 105 488-611 98-203 (1206)
418 PLN00033 photosystem II stabil 96.3 0.39 8.6E-06 49.9 18.4 149 12-168 236-396 (398)
419 KOG3630 Nuclear pore complex, 96.2 0.073 1.6E-06 59.8 13.4 155 429-600 95-262 (1405)
420 PF12894 Apc4_WD40: Anaphase-p 96.2 0.01 2.2E-07 39.3 4.4 34 52-86 11-44 (47)
421 PF12894 Apc4_WD40: Anaphase-p 96.2 0.015 3.3E-07 38.5 5.0 36 518-554 10-45 (47)
422 PF14761 HPS3_N: Hermansky-Pud 96.1 0.45 9.8E-06 43.5 15.7 144 23-170 29-213 (215)
423 PF05694 SBP56: 56kDa selenium 96.1 2 4.4E-05 44.0 29.5 193 275-467 86-344 (461)
424 PF07995 GSDH: Glucose / Sorbo 96.0 2.1 4.6E-05 43.9 27.1 248 144-416 4-330 (331)
425 TIGR03118 PEPCTERM_chp_1 conse 95.9 1.7 3.7E-05 42.0 21.5 209 351-561 24-291 (336)
426 KOG2377 Uncharacterized conser 95.9 0.93 2E-05 45.9 18.0 108 45-159 59-171 (657)
427 KOG1898 Splicing factor 3b, su 95.8 4.6 0.0001 45.9 31.7 172 330-507 854-1048(1205)
428 PHA03098 kelch-like protein; P 95.7 0.43 9.3E-06 53.2 17.2 188 360-552 294-514 (534)
429 PHA03098 kelch-like protein; P 95.6 0.5 1.1E-05 52.6 17.5 191 274-468 293-514 (534)
430 TIGR02604 Piru_Ver_Nterm putat 95.5 0.63 1.4E-05 48.7 16.3 145 435-602 14-204 (367)
431 COG4257 Vgb Streptogramin lyas 95.5 2.4 5.2E-05 40.1 23.0 233 264-510 61-308 (353)
432 PF14727 PHTB1_N: PTHB1 N-term 95.3 4.4 9.5E-05 42.4 31.7 266 275-551 36-362 (418)
433 PF12234 Rav1p_C: RAVE protein 95.3 0.93 2E-05 49.6 17.1 115 53-170 30-155 (631)
434 PF08728 CRT10: CRT10; InterP 95.3 0.55 1.2E-05 51.7 15.2 155 13-171 39-246 (717)
435 TIGR02604 Piru_Ver_Nterm putat 95.2 1 2.2E-05 47.1 16.9 106 53-160 14-142 (367)
436 PF14761 HPS3_N: Hermansky-Pud 95.1 2.6 5.7E-05 38.8 16.7 116 54-173 19-165 (215)
437 PRK13684 Ycf48-like protein; P 95.1 4.8 0.0001 41.3 29.5 177 408-609 147-329 (334)
438 PF10168 Nup88: Nuclear pore c 95.0 8.1 0.00018 43.9 24.4 34 264-297 146-182 (717)
439 KOG2247 WD40 repeat-containing 95.0 0.012 2.7E-07 59.3 2.0 149 55-223 37-187 (615)
440 PHA02790 Kelch-like protein; P 94.9 1.4 3.1E-05 47.9 17.5 187 402-614 271-473 (480)
441 KOG2280 Vacuolar assembly/sort 94.8 3.1 6.8E-05 45.4 18.7 214 268-489 36-271 (829)
442 KOG2280 Vacuolar assembly/sort 94.7 1.8 3.9E-05 47.1 16.8 183 371-559 64-256 (829)
443 PHA02790 Kelch-like protein; P 94.7 2.2 4.8E-05 46.4 18.5 188 275-468 271-473 (480)
444 COG5276 Uncharacterized conser 94.6 4.5 9.7E-05 38.9 26.9 263 276-548 96-368 (370)
445 PF03022 MRJP: Major royal jel 94.5 1.9 4E-05 43.0 15.8 168 32-202 34-248 (287)
446 TIGR03118 PEPCTERM_chp_1 conse 94.5 5.1 0.00011 38.9 24.8 235 96-347 25-289 (336)
447 KOG3630 Nuclear pore complex, 94.3 0.4 8.7E-06 54.2 11.3 183 269-452 46-261 (1405)
448 TIGR03606 non_repeat_PQQ dehyd 94.2 9 0.00019 40.6 29.0 111 3-113 20-165 (454)
449 KOG1916 Nuclear protein, conta 94.2 0.11 2.3E-06 56.9 6.6 90 329-419 153-263 (1283)
450 KOG3616 Selective LIM binding 94.1 2.4 5.2E-05 45.8 15.9 93 463-561 324-417 (1636)
451 COG5167 VID27 Protein involved 93.9 1.3 2.9E-05 45.6 13.1 148 440-611 473-632 (776)
452 COG4257 Vgb Streptogramin lyas 93.9 6.1 0.00013 37.6 23.5 182 17-225 66-263 (353)
453 PF07569 Hira: TUP1-like enhan 93.8 0.32 6.9E-06 46.0 8.5 65 60-124 18-97 (219)
454 COG3823 Glutamine cyclotransfe 93.8 4.7 0.0001 36.6 14.6 162 329-495 68-247 (262)
455 PF10168 Nup88: Nuclear pore c 93.6 2 4.4E-05 48.5 15.5 96 518-614 83-182 (717)
456 KOG1916 Nuclear protein, conta 93.4 0.077 1.7E-06 57.9 3.9 99 92-201 131-236 (1283)
457 PF03022 MRJP: Major royal jel 93.0 11 0.00023 37.7 24.4 136 414-550 35-216 (287)
458 PLN00033 photosystem II stabil 93.0 13 0.00029 38.9 29.8 107 264-376 280-396 (398)
459 PF02333 Phytase: Phytase; In 93.0 12 0.00027 38.4 22.9 196 24-225 68-291 (381)
460 PF10313 DUF2415: Uncharacteri 93.0 0.44 9.5E-06 30.6 5.2 32 53-84 1-35 (43)
461 PF07250 Glyoxal_oxid_N: Glyox 92.8 6.1 0.00013 37.8 15.2 142 331-475 48-207 (243)
462 PF10433 MMS1_N: Mono-function 92.8 18 0.0004 39.9 44.5 250 272-529 218-503 (504)
463 COG5167 VID27 Protein involved 92.7 3.4 7.3E-05 42.8 13.7 145 315-465 476-632 (776)
464 PRK14131 N-acetylneuraminic ac 92.6 15 0.00033 38.5 21.6 53 360-412 84-149 (376)
465 PF14781 BBS2_N: Ciliary BBSom 92.6 5.6 0.00012 33.4 12.8 108 58-173 4-127 (136)
466 TIGR03547 muta_rot_YjhT mutatr 92.3 16 0.00034 38.0 21.7 53 360-412 63-128 (346)
467 smart00036 CNH Domain found in 92.3 14 0.0003 37.3 28.3 100 22-123 12-132 (302)
468 PF12234 Rav1p_C: RAVE protein 92.2 4.3 9.3E-05 44.7 14.9 130 134-293 22-155 (631)
469 PF07250 Glyoxal_oxid_N: Glyox 92.0 3.2 6.9E-05 39.7 12.2 138 34-173 48-199 (243)
470 KOG3616 Selective LIM binding 92.0 4.5 9.8E-05 43.9 14.2 70 51-121 13-82 (1636)
471 KOG2247 WD40 repeat-containing 91.8 0.016 3.5E-07 58.5 -3.3 148 267-417 37-184 (615)
472 PF10313 DUF2415: Uncharacteri 91.7 0.89 1.9E-05 29.3 5.5 31 520-550 1-34 (43)
473 PF13449 Phytase-like: Esteras 91.7 17 0.00037 37.2 22.7 116 54-172 86-250 (326)
474 PF11635 Med16: Mediator compl 91.6 15 0.00032 42.6 19.4 87 518-606 258-345 (753)
475 PF05935 Arylsulfotrans: Aryls 91.4 14 0.00031 40.1 18.2 164 458-626 129-316 (477)
476 PF08728 CRT10: CRT10; InterP 91.4 7.9 0.00017 43.1 15.9 113 480-610 103-245 (717)
477 PF07569 Hira: TUP1-like enhan 91.3 1.8 3.9E-05 41.0 9.9 84 527-617 18-101 (219)
478 PRK13613 lipoprotein LpqB; Pro 91.2 28 0.00062 38.7 20.5 179 16-202 366-564 (599)
479 PF10433 MMS1_N: Mono-function 91.0 28 0.00061 38.4 41.2 231 316-557 220-484 (504)
480 PRK13614 lipoprotein LpqB; Pro 91.0 28 0.00061 38.3 25.1 162 54-224 344-518 (573)
481 COG1520 FOG: WD40-like repeat 90.9 23 0.0005 37.1 29.1 267 276-546 68-361 (370)
482 PF11635 Med16: Mediator compl 90.9 28 0.00061 40.4 20.7 193 106-302 64-297 (753)
483 PRK13615 lipoprotein LpqB; Pro 90.9 29 0.00062 38.1 20.6 151 16-173 337-504 (557)
484 COG4590 ABC-type uncharacteriz 90.8 7 0.00015 39.9 13.5 162 302-469 216-390 (733)
485 PF13449 Phytase-like: Esteras 90.8 21 0.00046 36.5 23.0 157 349-506 19-248 (326)
486 smart00036 CNH Domain found in 90.8 20 0.00043 36.2 28.9 229 277-515 14-278 (302)
487 PRK13613 lipoprotein LpqB; Pro 90.5 33 0.00072 38.2 24.3 162 50-224 359-537 (599)
488 PF10214 Rrn6: RNA polymerase 90.3 42 0.00092 39.2 28.3 172 91-295 77-277 (765)
489 TIGR02276 beta_rpt_yvtn 40-res 90.1 1.7 3.7E-05 28.0 6.3 41 62-102 1-42 (42)
490 TIGR03547 muta_rot_YjhT mutatr 89.7 27 0.0006 36.2 21.4 57 314-370 60-128 (346)
491 PF11725 AvrE: Pathogenicity f 89.7 30 0.00065 42.3 19.3 366 51-454 361-763 (1774)
492 COG3292 Predicted periplasmic 89.5 33 0.00071 36.7 22.5 166 371-543 354-526 (671)
493 TIGR02276 beta_rpt_yvtn 40-res 89.4 2.1 4.5E-05 27.6 6.2 41 444-485 1-41 (42)
494 PLN02193 nitrile-specifier pro 89.3 37 0.0008 37.0 20.3 197 398-614 171-413 (470)
495 PRK14131 N-acetylneuraminic ac 89.2 32 0.0007 36.2 22.4 39 458-497 190-230 (376)
496 COG5290 IkappaB kinase complex 88.9 34 0.00074 38.0 17.5 410 135-607 10-439 (1243)
497 KOG2377 Uncharacterized conser 88.9 15 0.00033 37.7 14.1 147 145-326 26-173 (657)
498 PRK13615 lipoprotein LpqB; Pro 88.7 42 0.00092 36.9 23.6 156 56-225 337-503 (557)
499 TIGR03548 mutarot_permut cycli 88.5 32 0.00069 35.3 21.1 106 317-424 72-197 (323)
500 PF08801 Nucleoporin_N: Nup133 88.0 27 0.00059 37.5 17.1 30 583-612 191-220 (422)
No 1
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-121 Score=910.25 Aligned_cols=840 Identities=54% Similarity=0.915 Sum_probs=792.2
Q ss_pred CCceecccccccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEE
Q 038577 1 MNYRFQNLLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFI 79 (860)
Q Consensus 1 ~~~~~~~~~g~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vw 79 (860)
++|+|+|++|++|+.|++.|+ ||..++++.+|+|.++|+++++...+...+...|+++++||+|.+|++..+.|...+.
T Consensus 3 ~efrfsNllGTvyr~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lv 82 (893)
T KOG0291|consen 3 TEFRFSNLLGTVYRAGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLV 82 (893)
T ss_pred cccchhhcccceeecCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEE
Confidence 479999999999999999999 9999999999999999999999999998999999999999999999999999999999
Q ss_pred EcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCc-ccceeEEEEEeeccCCCeEEEEEcCCCCeEEE
Q 038577 80 NLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKK-EVFAFELIRTLADCNDKVTALNWSPDSNYLLV 158 (860)
Q Consensus 80 d~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s 158 (860)
++.....++.+.++.+|.|+.|||||+++|++..+.+.||..++... .+.|+.+.+++.+|...|+++.|+.|.++|++
T Consensus 83 s~~~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~ 162 (893)
T KOG0291|consen 83 SLLSRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVT 162 (893)
T ss_pred ecccceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEe
Confidence 99999999999999999999999999999999999999999987655 68899999999999999999999999999999
Q ss_pred eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCC
Q 038577 159 GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE 238 (860)
Q Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~ 238 (860)
|+.|.++++|.++.. +. .....+.+|++.|.++.|..+.. .+++.+.||.+.+|..+...........+.+
T Consensus 163 gsrD~s~rl~~v~~~-k~---~~~~~l~gHkd~VvacfF~~~~~-----~l~tvskdG~l~~W~~~~~P~~~~~~~kd~e 233 (893)
T KOG0291|consen 163 GSRDLSARLFGVDGN-KN---LFTYALNGHKDYVVACFFGANSL-----DLYTVSKDGALFVWTCDLRPPELDKAEKDEE 233 (893)
T ss_pred ccccceEEEEEeccc-cc---cceEeccCCCcceEEEEeccCcc-----eEEEEecCceEEEEEecCCCccccccccccc
Confidence 999999999999877 33 45788999999999999999998 9999999999999999855433222111100
Q ss_pred ------CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEE
Q 038577 239 ------PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTA 312 (860)
Q Consensus 239 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~ 312 (860)
...++........|....+..+...+..+++.+|++..+.|++|..+|.+.+|.+++...++.+.....+|..+
T Consensus 234 g~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~ 313 (893)
T KOG0291|consen 234 GSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTV 313 (893)
T ss_pred ccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEE
Confidence 01111112233478787788888888999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC
Q 038577 313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392 (860)
Q Consensus 313 ~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 392 (860)
+|+..|.++++++..-|++.||++++...+.+.++|...+++++++|||+++|+|+.||.|++||..++.|..++..|++
T Consensus 314 ~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts 393 (893)
T KOG0291|consen 314 SFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS 393 (893)
T ss_pred EecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE
Q 038577 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI 472 (860)
Q Consensus 393 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~ 472 (860)
.|+.+.|+..++.+++++.||+|+.||+...++.+++..|.+.+..+++.+|.|..+++|+.|...|++|++++|+++..
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q 038577 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE 552 (860)
Q Consensus 473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 552 (860)
+.||.+||.+++|+|++..|+++|+|.+|++||+-......+...+...+..++|+|||+.||+++-||.|.+||.+.+.
T Consensus 474 LsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~ 553 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAV 553 (893)
T ss_pred hcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhce
Confidence 99999999999999999999999999999999998887788888999999999999999999999999999999999999
Q ss_pred eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceee
Q 038577 553 LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVID 632 (860)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 632 (860)
....+++.++..+++...+...+.+++.+++++.+++|+||.++++||....|++|+++++.++++|+...|.+++|..+
T Consensus 554 q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~e 633 (893)
T KOG0291|consen 554 QVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLE 633 (893)
T ss_pred eeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCC-----CCCCCccceeEEEECCCCCeEEEeccccEEE
Q 038577 633 FLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALP-----NRGRPTIQTKCLKIAPTGRNFVAATTEGVLV 707 (860)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i 707 (860)
+++.+.+++.|+++++|.++++++. +....+||.++ ++.+|...+.++.|||.||.|++++++|+.|
T Consensus 634 fln~rkmtEfG~~~LiD~e~~~~e~--------~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatTEGl~I 705 (893)
T KOG0291|consen 634 FLNRRKMTEFGNMDLIDTEESDLEG--------RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATTEGLLI 705 (893)
T ss_pred HhccccccccCCccccccccccccc--------cccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecccceEE
Confidence 9999999999999999986666654 56677888776 6889999999999999999999999999999
Q ss_pred EecCCccccCCcccCccCCHHHHHhhcCcCCcHHHHHHHHhcCChHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHH
Q 038577 708 YSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALS 787 (860)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~ 787 (860)
|+++....|+|.+++.+.+|+.++.++.+.+|+++++++|++|+++++.++|+++|+.+|+.....||..+++.||++|.
T Consensus 706 Ysld~~~~FDPf~LD~~vTPe~v~~al~~qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~ 785 (893)
T KOG0291|consen 706 YSLDTTILFDPFDLDVDVTPESVREALREQEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALS 785 (893)
T ss_pred EecCCceEEcccccccccCHHHHHHHHhcchHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCChhhHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcC
Q 038577 788 DLLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVG 857 (860)
Q Consensus 788 ~~l~~~~~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 857 (860)
+.+++.+|+|+.+.|++.+|..||.++......++++|..|++.+....+.+.+++..|.++|+||.+..
T Consensus 786 ~~l~~s~HieF~l~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~~Nky~L~~lv~~~ 855 (893)
T KOG0291|consen 786 RFLENSPHIEFYLRWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCSLNKYTLRYLVSKR 855 (893)
T ss_pred HHHhcCchHHHHHHHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHhhh
Confidence 9999999999999999999999999999987789999999999999999999999999999999998754
No 2
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-72 Score=558.02 Aligned_cols=758 Identities=17% Similarity=0.265 Sum_probs=588.5
Q ss_pred ceeccccccccc-CCcEEEe-----CCCEEEeeeCCeEEEEECCCCcEEee--ccCCccCeeEEEEcCCCCEEEEEcCCC
Q 038577 3 YRFQNLLGAPYR-GGNAVLS-----QNTKLISPVGNRVSVTDLIKSKTVTL--PVESSSNICRIAVSPDGTFLLTVDENQ 74 (860)
Q Consensus 3 ~~~~~~~g~~~~-~~~~~~s-----dg~~l~~~~~~~i~v~d~~~~~~~~~--~~~h~~~v~~va~spdg~~la~~~~d~ 74 (860)
|+..-.+|.+-+ ++++.|- .|++++.+....|.+||+++|+.... ....+..|+|++-+||.-+||+|..||
T Consensus 8 ye~~~~fgviaS~~aN~~~~~~~~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDG 87 (888)
T KOG0306|consen 8 YEPAAVFGVIASEVANINFVVKRSGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADG 87 (888)
T ss_pred ccccceeeeeecCccceeEEEeecCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCc
Confidence 444555555554 3344433 49999998989999999999955332 224556899999999999999999999
Q ss_pred cEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC
Q 038577 75 RCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD 152 (860)
Q Consensus 75 ~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 152 (860)
.|+||+..++....++. |+..|+++.|...|..||+| .|+.|.+||+-.... ..++.||.+.|+..-|..+
T Consensus 88 sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-------l~rL~GHkd~iT~~~F~~~ 160 (888)
T KOG0306|consen 88 SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-------LFRLRGHKDSITQALFLNG 160 (888)
T ss_pred eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-------eEEeecchHHHhHHhccCC
Confidence 99999999998888887 99999999999999999999 899999999987764 6889999999999999998
Q ss_pred CCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCcc
Q 038577 153 SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDE 232 (860)
Q Consensus 153 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~ 232 (860)
.+++++.+.|+.|++||+++. .+..+...|.+.++.+++.+ + .+++++.|+.+++|++.........
T Consensus 161 ~~~lvS~sKDs~iK~WdL~tq------hCf~Thvd~r~Eiw~l~~~~--~-----~lvt~~~dse~~v~~L~~~~D~~~~ 227 (888)
T KOG0306|consen 161 DSFLVSVSKDSMIKFWDLETQ------HCFETHVDHRGEIWALVLDE--K-----LLVTAGTDSELKVWELAFEDDEKET 227 (888)
T ss_pred CeEEEEeccCceEEEEecccc------eeeeEEecccceEEEEEEec--c-----eEEEEecCCceEEEEeecccccccc
Confidence 899999999999999999998 77889999999999999988 4 8999999999999999443221110
Q ss_pred ccCCC----CC---CCCC-----------------CCcceeeeEEeeeecc----------------c------------
Q 038577 233 TMEDS----EP---PSPG-----------------TPERRVKKWGLLRKDD----------------F------------ 260 (860)
Q Consensus 233 ~~~~~----~~---~~~~-----------------~~~~~~~~~~~~~~~~----------------~------------ 260 (860)
..... .. ...+ ....-+..+.+..... .
T Consensus 228 ~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl 307 (888)
T KOG0306|consen 228 NRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSL 307 (888)
T ss_pred cccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhH
Confidence 00000 00 0000 0000111222211100 0
Q ss_pred ---------cCCCCceEEEEecCCCCE--EEEEEcCCeEEEEECCCceeE---------EEEeecCceeEEEEEeeCCCE
Q 038577 261 ---------SQAPSKVTACDYHRGLDM--VVVGFSNGVFGLYQMPDFVCI---------HLLSISREKITTAVFNELGNW 320 (860)
Q Consensus 261 ---------~~~~~~v~~~~~~~~~~~--l~~~~~~g~i~~~~~~~~~~~---------~~~~~~~~~i~~~~~s~~~~~ 320 (860)
......+.++.+.|.+.. .++-..++.+.+|.++..... ..+.+|...|.+++++.+...
T Consensus 308 ~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~ 387 (888)
T KOG0306|consen 308 SDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSIL 387 (888)
T ss_pred HHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCcee
Confidence 001345677777776532 233478888999988652222 456778899999999998877
Q ss_pred EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEe
Q 038577 321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM 400 (860)
Q Consensus 321 l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 400 (860)
++++++ +.+.+|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+...+.++..|.+.|++++.+
T Consensus 388 ~~Sga~--~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 388 LASGAG--ESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS 463 (888)
T ss_pred eeecCC--CcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence 776654 89999999999999988654 68899999999999999999999999999999999999999999999999
Q ss_pred eCCCEEEEEeCCCcEEEEEccccc-----eeeEe------eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce
Q 038577 401 ANNHSLLSASLDGTVRAWDLFRYR-----NFRTF------TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL 469 (860)
Q Consensus 401 ~~~~~l~s~~~dg~i~~wd~~~~~-----~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~ 469 (860)
||+..+++||.|.+|++||+.-.. ..+.+ ...-...+.|+.+||||++||++--|+ ++++|-+.+.+.
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn-TVkVyflDtlKF 542 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN-TVKVYFLDTLKF 542 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC-eEEEEEecceee
Confidence 999999999999999999974211 11111 122234789999999999999999999 999999999999
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577 470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL 549 (860)
Q Consensus 470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 549 (860)
.-.+.||.-||.|+..|||++.++|||.|++|++|-++-|.+...+++|...|.++.|-|+...+++++.|+.|+-||-.
T Consensus 543 flsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~ 622 (888)
T KOG0306|consen 543 FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGE 622 (888)
T ss_pred eeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccc
Q 038577 550 NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDG 629 (860)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 629 (860)
..+.++.+++|.. .|++++.+|+|.++++++.|.+|++|.-....++-.-.
T Consensus 623 kFe~iq~L~~H~~--------------------ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEee--------- 673 (888)
T KOG0306|consen 623 KFEEIQKLDGHHS--------------------EVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEE--------- 673 (888)
T ss_pred hhhhheeeccchh--------------------eeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehh---------
Confidence 9999999999986 59999999999999999999999999987765542111
Q ss_pred eeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEe
Q 038577 630 VIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709 (860)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~ 709 (860)
.+.+.++.++......-...-|| +.+|-..+++ ...+. +
T Consensus 674 ---------------------kE~ErEe~yE~l~~~~e~~~~~~-----------------~~~g~~~~~s-kkTie--S 712 (888)
T KOG0306|consen 674 ---------------------KEGEREEEYETLLASEEVVAGDG-----------------SADGDAGVAS-KKTIE--S 712 (888)
T ss_pred ---------------------hhhhhHHHHHHhhhhcccccCCC-----------------cccccccchh-hhhhH--H
Confidence 01111111110000000000011 0111111110 00000 0
Q ss_pred cC-CccccCCcccCccCCHHHHHhhcCcCCcHHHHHHHHhcCChHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHHh
Q 038577 710 ID-ESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSD 788 (860)
Q Consensus 710 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~ 788 (860)
+. .+.+.+..++.. ......+..+++.+..+++++++.++.++++++|..++.++++.++..||++++..+|+++..
T Consensus 713 vk~aE~i~ea~di~~--~e~~~~ee~~~g~P~npll~a~~ks~e~yi~dtl~~Ir~S~Ld~aLlllPfS~V~~vl~~i~~ 790 (888)
T KOG0306|consen 713 VKSAERILEALDIGR--EELTQLEEYSPGHPHNPLLNAYNKSPEKYIVDTLMKIRASELDDALLLLPFSYVLDVLKFIDE 790 (888)
T ss_pred HHHHHHHHHHHHHHH--HHHHhHHhhcCCCCCcHHHHHhcCCHHHHHHHHHHhcchhhhhhhheeccHHHHHHHHHHHHH
Confidence 00 000000000000 000011111123345799999998888999999999999999999999999999999999999
Q ss_pred hhccCCChhhHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcCC
Q 038577 789 LLESCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVGA 858 (860)
Q Consensus 789 ~l~~~~~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 858 (860)
+++...++||+.+.+-.++|+|..+|.+++ ++++.|++|+..+++..+.+++..|+|+..|.|++..-|
T Consensus 791 ~~q~~~~veLv~rv~~fL~rih~~~it~~~-~~kp~l~~i~s~l~~~v~q~rdv~G~NlagL~~l~~E~e 859 (888)
T KOG0306|consen 791 CIQRKSKVELVCRVLFFLLRIHHKQITAHK-NMKPLLEKIKSKLREIVEQLRDVLGFNLAGLSLLKQEWE 859 (888)
T ss_pred HHcCCCcceeEeeeeeehhhhhhhhhcccc-chHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHhhh
Confidence 999999999999999999999999999998 899999999999999999999999999999999987544
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-69 Score=539.62 Aligned_cols=721 Identities=17% Similarity=0.258 Sum_probs=591.4
Q ss_pred CceecccccccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEE-eec-cCCccCeeEEEEcCCCCEEEEEcCCCcEEE
Q 038577 2 NYRFQNLLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTV-TLP-VESSSNICRIAVSPDGTFLLTVDENQRCHF 78 (860)
Q Consensus 2 ~~~~~~~~g~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~-~~~-~~h~~~v~~va~spdg~~la~~~~d~~i~v 78 (860)
+|.....+.++|+||.++|| +|+.|++.+++.|.+-|+++++.. +.. .+....+++++++||+++|++++..+-+++
T Consensus 9 ~ya~ers~epiYtGG~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv 88 (775)
T KOG0319|consen 9 SYALERSLEPIYTGGPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRV 88 (775)
T ss_pred hhhhhhcccceecCCceeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEE
Confidence 57777889999999999999 999999999999999999999984 222 235567999999999999999999999999
Q ss_pred EEcccCeEEEEee--cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCC-
Q 038577 79 INLHCHVVLHRVR--FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN- 154 (860)
Q Consensus 79 wd~~~~~~~~~~~--~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~- 154 (860)
|++.+++.++..+ |++||.-++|+|.|.++|+| .|+.++|||+..+. +.+.+.||.+.|.++.|.|+-.
T Consensus 89 ~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-------~th~fkG~gGvVssl~F~~~~~~ 161 (775)
T KOG0319|consen 89 WSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-------CTHSFKGHGGVVSSLLFHPHWNR 161 (775)
T ss_pred EEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-------EEEEecCCCceEEEEEeCCccch
Confidence 9999999998887 89999999999999999999 89999999999887 6899999999999999999875
Q ss_pred -eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccc
Q 038577 155 -YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET 233 (860)
Q Consensus 155 -~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 233 (860)
.|++|+.|+.+++||+.... .+...+..|...|+++.|++|+. .++++++|..+.+||+..-..
T Consensus 162 ~lL~sg~~D~~v~vwnl~~~~-----tcl~~~~~H~S~vtsL~~~~d~~-----~~ls~~RDkvi~vwd~~~~~~----- 226 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLNDKR-----TCLHTMILHKSAVTSLAFSEDSL-----ELLSVGRDKVIIVWDLVQYKK----- 226 (775)
T ss_pred hheeecCCCceEEEEEcccCc-----hHHHHHHhhhhheeeeeeccCCc-----eEEEeccCcEEEEeehhhhhh-----
Confidence 48899999999999999661 25788899999999999999998 999999999999999954221
Q ss_pred cCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC-----CCEEEEEEcCCeEEEEECCCceeEEEEeec-Cc
Q 038577 234 MEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG-----LDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-RE 307 (860)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-~~ 307 (860)
...-+-...+.++.+-++ +.++++.+.+|.+++|+.+++++....+.. ..
T Consensus 227 ------------------------l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~ 282 (775)
T KOG0319|consen 227 ------------------------LKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSE 282 (775)
T ss_pred ------------------------hheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCch
Confidence 111112234556666665 779999999999999999998887655544 33
Q ss_pred eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY-SPDSQLLATGADDNKVKVWTVSSGFCFVT 386 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 386 (860)
.+..+...+....+++...+ ..+.+||.++.+....+-+....|..++| .|+.+++++++..+.+++|+..+..+. .
T Consensus 283 e~~~~~~~~~~~~~l~vtae-Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-i 360 (775)
T KOG0319|consen 283 EIDHLLAIESMSQLLLVTAE-QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-I 360 (775)
T ss_pred hhhcceeccccCceEEEEcc-ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-E
Confidence 46666555555555555555 89999999999999999998899999987 567789999999999999998877776 7
Q ss_pred eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee---EeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEE
Q 038577 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR---TFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVW 462 (860)
Q Consensus 387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~ 462 (860)
+.+|...|.++....+|..|++|+.|.++++|.++++.... .....+...+.+++++..+ .++++++.|. ++++|
T Consensus 361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~-tlK~W 439 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC-TLKLW 439 (775)
T ss_pred EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc-eEEEe
Confidence 88999999999977778899999999999999885443222 1223456678888887665 5777888888 99999
Q ss_pred ECCCCceE---------EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCE
Q 038577 463 SMKTGRLL---------DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQ 533 (860)
Q Consensus 463 d~~~~~~~---------~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 533 (860)
++...+.. .....|...|++++++|+.+++||||.|++.+||+++.......+.+|...|.++.|+|..+.
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~ 519 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQL 519 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccce
Confidence 99863211 123569999999999999999999999999999999988878888899999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 534 LACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 534 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
+|+++.|++|+||.+.++.++.++.||.. .|..+.|-.+|+.|++++.||.|++|++.++
T Consensus 520 laT~SgD~TvKIW~is~fSClkT~eGH~~--------------------aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 520 LATCSGDKTVKIWSISTFSCLKTFEGHTS--------------------AVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eEeccCCceEEEEEeccceeeeeecCccc--------------------eeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 99999999999999999999999999986 5999999999999999999999999999999
Q ss_pred eEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCC
Q 038577 614 VLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPT 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spd 693 (860)
++++++. .|.+.|-++..+|.
T Consensus 580 eC~~tlD-----------------------------------------------------------~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 580 ECEMTLD-----------------------------------------------------------AHNDRVWALSVSPL 600 (775)
T ss_pred hhhhhhh-----------------------------------------------------------hccceeEEEeecCc
Confidence 9886442 23457899999999
Q ss_pred CCeEEEeccccEE-EEecCCccccCCcccC---c-cCCHHHHHhhcCcCCcHHHHHHHHhcCChHHHHHHhH----hcCC
Q 038577 694 GRNFVAATTEGVL-VYSIDESFIFDPTDLD---I-DVTPEAVDAALNEDQPKRALILSLRLNEDNLIKKCIF----AISP 764 (860)
Q Consensus 694 g~~~~~~~~~g~~-i~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~----~~~~ 764 (860)
+.+|++++.||.+ .|.-..+... .++.+ + ....++....+.+++|.+++..|+.+.-+..+.++++ .-++
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~Te~~~-~ee~~K~~eaieq~QeL~n~l~~~~~~~A~~LA~tLd~P~~~f~vi~~~~r~r~~ 679 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDVTEEEQ-NEEQEKREEAIEQEQELENLLSQKRYTKAFVLALTLDKPHLVFTVINALYRERDP 679 (775)
T ss_pred cceeEecCCCeEEEEeecCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHhhccCchhHHHHHHHHHhcCCc
Confidence 9999999999977 6753322111 11111 1 1122233344568899999999999977766666655 5557
Q ss_pred CccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHhhhhh-hcccchhHHHHHHHHHHHHHHHHHHHHh
Q 038577 765 VDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQ-QNSRNLLPSLKSLQKSITRIHQDLADTC 843 (860)
Q Consensus 765 ~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~l~~~l~~H~~~l~-~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 843 (860)
.++..++.+|..+....||++...|=.+.++-..+|+.|..+|+.|-..=. .-+ -..+.++.|.--.++..++++.+.
T Consensus 680 e~l~~av~~L~~dq~~~Ll~~~~~WnTnsk~c~vaQ~vL~~~l~~~~p~el~~~~-g~~~~~e~l~PYtqRHf~Rid~~~ 758 (775)
T KOG0319|consen 680 EELGQAVFRLNEDQPEALLQFVVKWNTNSKTCHVAQRVLYEILKRVDPEELVRWP-GSGEVVEALLPYTQRHFRRIDRLV 758 (775)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHhccChHHhhccc-chHHHHHhhhhHHHHHHHHHHHHh
Confidence 889999999999999999999999998889999999999999999854332 222 455666777777777777777665
Q ss_pred hccHHHHHHH
Q 038577 844 SSNEYMLQYL 853 (860)
Q Consensus 844 ~~~~~~l~~~ 853 (860)
.. .++|.|+
T Consensus 759 ~~-~~lLdf~ 767 (775)
T KOG0319|consen 759 QD-SALLDFT 767 (775)
T ss_pred hh-hHHHHHh
Confidence 53 2455554
No 4
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-61 Score=486.61 Aligned_cols=717 Identities=19% Similarity=0.255 Sum_probs=562.0
Q ss_pred CCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccC
Q 038577 63 DGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCN 141 (860)
Q Consensus 63 dg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~ 141 (860)
.+.++++.+-+....+||...-..+..-+ +...|+|++=. ..++.++..+.|.+|....- ....+.+|.
T Consensus 45 ~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~--~~~vy~A~g~~i~~~~rgk~--------i~~~~~~~~ 114 (910)
T KOG1539|consen 45 GSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASD--KDYVYVASGNKIYAYARGKH--------IRHTTLLHG 114 (910)
T ss_pred CceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEec--CceEEEecCcEEEEEEccce--------EEEEecccc
Confidence 45677788888999999999888777664 78889998875 45666667788888864422 356677888
Q ss_pred CCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEe
Q 038577 142 DKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSW 221 (860)
Q Consensus 142 ~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w 221 (860)
..|.-+. |-|.+++++..++.+.||+.....+... .....+....+.|+++. +|... .+.++.|+.+|.+.+|
T Consensus 115 a~v~~l~--~fGe~lia~d~~~~l~vw~~s~~~~e~~-l~~~~~~~~~~~Ital~-HP~TY---LNKIvvGs~~G~lql~ 187 (910)
T KOG1539|consen 115 AKVHLLL--PFGEHLIAVDISNILFVWKTSSIQEELY-LQSTFLKVEGDFITALL-HPSTY---LNKIVVGSSQGRLQLW 187 (910)
T ss_pred ceEEEEe--eecceEEEEEccCcEEEEEecccccccc-ccceeeeccCCceeeEe-cchhh---eeeEEEeecCCcEEEE
Confidence 7777665 4477899999999999999987411111 11222333333377664 44432 3489999999999999
Q ss_pred eecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE
Q 038577 222 GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL 301 (860)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~ 301 (860)
++.++.. ...+.+..+.|+++.-+|--+.+++|..+|.|.+++++.++.+.+
T Consensus 188 Nvrt~K~----------------------------v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s 239 (910)
T KOG1539|consen 188 NVRTGKV----------------------------VYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS 239 (910)
T ss_pred EeccCcE----------------------------EEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE
Confidence 9998643 455667778999999999999999999999999999999999999
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 380 (860)
++...++|++++|..||+.+++++...|.+.+||++..+.+.... .|.+.|....|.|....+++++.|+.+++|-.++
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 999999999999999999999998888999999999998887775 7889999999999999999999999998886553
Q ss_pred --C--eeEEEeecCCCceEEEEEe-eCCCEEEEEeCCCcEEEEEccc---------------------------------
Q 038577 381 --G--FCFVTFTEHTNAVTALHFM-ANNHSLLSASLDGTVRAWDLFR--------------------------------- 422 (860)
Q Consensus 381 --~--~~~~~~~~~~~~v~~i~~~-~~~~~l~s~~~dg~i~~wd~~~--------------------------------- 422 (860)
| +.++.-.+|..+..++.|. .++..+.+++.|++++.+++..
T Consensus 320 ~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~ 399 (910)
T KOG1539|consen 320 GDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIV 399 (910)
T ss_pred CCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcce
Confidence 3 5566778999999999997 6788999999999888876510
Q ss_pred --------------------------------cce-eeEeeCC----CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577 423 --------------------------------YRN-FRTFTTP----SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 423 --------------------------------~~~-~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
... ...+... ....+.+++.+++|++.++|...| .|.+|+++
T Consensus 400 ~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G-~Id~fNmQ 478 (910)
T KOG1539|consen 400 EFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG-TIDRFNMQ 478 (910)
T ss_pred eeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC-eEEEEEcc
Confidence 000 0011111 224678999999999999999998 99999999
Q ss_pred CCceEEEe---cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577 466 TGRLLDIL---SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ 542 (860)
Q Consensus 466 ~~~~~~~~---~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 542 (860)
+|-....+ +.|.++|++++...-++.+++++.+|.+++||..... ..........++.+..+.....++.+.+|-.
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~ 557 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSLRLGSSITGIVYHRVSDLLAIALDDFS 557 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeeeccCCCcceeeeeehhhhhhhhcCcee
Confidence 99999888 5899999999998889999999999999999998776 4455566778899999999999999999999
Q ss_pred EEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577 543 IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT 622 (860)
Q Consensus 543 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 622 (860)
|.++|..+.+.++.+.+|.+ .|++++|||||+||++++.|++|++||+.++.++..+...
T Consensus 558 I~vvD~~t~kvvR~f~gh~n--------------------ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 558 IRVVDVVTRKVVREFWGHGN--------------------RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred EEEEEchhhhhhHHhhcccc--------------------ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 99999999999999999986 5999999999999999999999999999999999988765
Q ss_pred c---cccccceeeeccCCCCCCCC-------------CCccccC-----------------CCCCcccc------ccccc
Q 038577 623 H---NLSLDGVIDFLNSKNMTEAG-------------PMDLIDD-----------------DNSDTEEG------VEKQT 663 (860)
Q Consensus 623 ~---~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~-----------------~~~~~~~~------~~~~~ 663 (860)
. ++++++.++++...+....| +...++. ++.+..+. .....
T Consensus 618 ~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~vs~r~~~~~~~~~~v~lPst~~~~d~e~~~~tLE~~~e~i~y~~ 697 (910)
T KOG1539|consen 618 SPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSVSTRAIPADYVPSWVMLPSTCDEDDDEDDEVTLESNDEDIKYSS 697 (910)
T ss_pred CcceeeEECCCCCEEEEEEecCceEEEEEchhHheeccccccCcccccceeecCcccccccchhhhhhhhccccccccCC
Confidence 4 45666666666655544333 0000000 00000000 00001
Q ss_pred cCccccC------CC----------CCCCCCCCCccceeEEEECCCCCeEEEeccc--cEEEEecCCccccCCcccCccC
Q 038577 664 RGKLDYD------LP----------GALPNRGRPTIQTKCLKIAPTGRNFVAATTE--GVLVYSIDESFIFDPTDLDIDV 725 (860)
Q Consensus 664 ~~~~~~~------~~----------g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~ 725 (860)
..+++.. +| ..+++||||+++|+.++-+| |++++.. |.+... ....+++. .
T Consensus 698 ~eQldeeLvTlS~lp~Srwq~Ll~LelIk~RnkPke~PK~pkkaP----FFLp~~~s~g~v~e~------~~~~~~~~-~ 766 (910)
T KOG1539|consen 698 PEQLDEELVTLSKLPRSRWQNLLNLELIKKRNKPKEPPKKPKKAP----FFLPKVPSEGLVLET------PAAEELNK-E 766 (910)
T ss_pred hhHhChhhhhhccCcHHHhhhcccHHHHHhcCCCCCCCCccccCC----cccccCCcccccccC------cchhhhcc-h
Confidence 1111111 11 23458999999999999999 8888543 433110 11111111 1
Q ss_pred CHHHHHhhcC----cCCcHHHHHHHHhcCChHHHHHHhHhcCCCccchhcccC-----CHHHHHHHHHHHHhhhccCCCh
Q 038577 726 TPEAVDAALN----EDQPKRALILSLRLNEDNLIKKCIFAISPVDIPAVASSI-----PYRYMQRLIEALSDLLESCPHL 796 (860)
Q Consensus 726 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~l-----~~~~~~~ll~~l~~~l~~~~~~ 796 (860)
..++.-+.+. +.+|.+.|.++..++++..++++|+.++|+.|+.+++.| |.+.++.|+++|..+|.+++||
T Consensus 767 ~~~~~ik~~~~L~~es~F~~~Lre~~~s~~~~~~~~~L~~~~psaiD~eiRsL~d~~~~~~~~~~Fi~~l~~~l~~k~nF 846 (910)
T KOG1539|consen 767 EDENKIKKLGLLELESSFTTLLREGKDSKDFLDAFALLKNLSPSAIDFEIRSLNDAGETIEEMVIFIKMLTQMLKTKRNF 846 (910)
T ss_pred hhhhhhhccccccccchHHHHHhhccccccHHHHHHHHHhcCcchheeehhhhhccCcchHHHHHHHHHHHHHhccccCH
Confidence 2222222222 567888888899999999999999999999999999999 5888999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhcc--cchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhcC
Q 038577 797 EFMLRWCQELCKTHGNTIQQNS--RNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSVG 857 (860)
Q Consensus 797 ~~~~~~l~~~l~~H~~~l~~~~--~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 857 (860)
||+|+|+..|+|.|+..|..++ +++.+.|+++.+.+.+.|++|++++.++.|+|.|+++.+
T Consensus 847 EL~qa~~slf~K~H~~~l~~~~~~~dl~e~l~~~~~v~~e~wq~le~l~~~~mgvl~~l~nal 909 (910)
T KOG1539|consen 847 ELVQAYMSLFLKSHGLVLWNHEGPEDLTEELQNWEEVQSEEWQRLEELFLYCMGVLAFLKNAL 909 (910)
T ss_pred HHHHHHHHHHHHhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHhhcc
Confidence 9999999999999999997653 269999999999999999999999999999999999864
No 5
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-58 Score=460.41 Aligned_cols=534 Identities=21% Similarity=0.277 Sum_probs=459.1
Q ss_pred CcEEEe-CCCEEEeeeCC-eEEEEECCCCcEEeeccC-CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-
Q 038577 16 GNAVLS-QNTKLISPVGN-RVSVTDLIKSKTVTLPVE-SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR- 91 (860)
Q Consensus 16 ~~~~~s-dg~~l~~~~~~-~i~v~d~~~~~~~~~~~~-h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~- 91 (860)
-+++++ |+++|+++..+ -+++|++.+++....... |.++|.-++|+|.|..||+|+.|+.++|||+..+.+.+.++
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG 145 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG 145 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC
Confidence 367888 99999998775 499999999998877766 99999999999999999999999999999999999999999
Q ss_pred cCCceeEEEECCCCC--EEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEE
Q 038577 92 FKYPVNAILFSPNGK--YIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF 168 (860)
Q Consensus 92 ~~~~v~~~~fspdg~--~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vw 168 (860)
|++.|.++.|.|+-. .|++| .|+.+++||+..... ++..+..|.+.|++++|++|+..+++++.|..+.+|
T Consensus 146 ~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t------cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 146 HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT------CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred CCceEEEEEeCCccchhheeecCCCceEEEEEcccCch------HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 899999999999764 46777 899999999997764 567888999999999999999999999999999999
Q ss_pred eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcce
Q 038577 169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR 248 (860)
Q Consensus 169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (860)
|+... ....++ .-...+.++.+.+++...+..+++++|.+|.++.||.++.......
T Consensus 220 d~~~~------~~l~~l-p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~---------------- 276 (775)
T KOG0319|consen 220 DLVQY------KKLKTL-PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQ---------------- 276 (775)
T ss_pred ehhhh------hhhhee-chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhh----------------
Confidence 99655 223333 3345567777777722222239999999999999999886541111
Q ss_pred eeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEe-eCCCEEEEEEcc
Q 038577 249 VKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN-ELGNWLVFGCAK 327 (860)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~~ 327 (860)
..+. ...+..+...+....++..+.+.++.+||.++.+....+-+..+.|..++|- |+.+.+++++..
T Consensus 277 ----------~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 277 ----------RQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred ----------ccCC-chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence 1111 2236666677777788888999999999999999999999999999999986 566777777665
Q ss_pred CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEeecCCCceEEEEEeeCC
Q 038577 328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNAVTALHFMANN 403 (860)
Q Consensus 328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~~~~ 403 (860)
+.+++|+..+..+. .+.+|...|.++....+|.+|++|+.|.++++|.++.+ .++....+|.+.|.+++++..+
T Consensus 346 -~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 346 -PELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred -CceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence 99999998887766 67899999999997778889999999999999988543 3455667899999999998765
Q ss_pred -CEEEEEeCCCcEEEEEccccceeeE--------eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec
Q 038577 404 -HSLLSASLDGTVRAWDLFRYRNFRT--------FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS 474 (860)
Q Consensus 404 -~~l~s~~~dg~i~~wd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 474 (860)
.+|+++|.|+++++|++...+.... ....+...+.+++++|+.+++|+|+.|. +.++|++.......++.
T Consensus 424 asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk-taKiW~le~~~l~~vLs 502 (775)
T KOG0319|consen 424 ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK-TAKIWDLEQLRLLGVLS 502 (775)
T ss_pred ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc-ceeeecccCceEEEEee
Confidence 6899999999999999987332211 1234566899999999999999999999 99999999999999999
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM 554 (860)
Q Consensus 475 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 554 (860)
||...|.++.|+|..+.++|+|.|++|+||.+.+..++..+.+|...|..+.|-.+|..|++++.||.+++|++++++++
T Consensus 503 GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 503 GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred CCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577 555 YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD 612 (860)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~ 612 (860)
.+++.|++ .|++++-+|.+.++++|+.||.|.+|.=.+
T Consensus 583 ~tlD~H~D--------------------rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 583 MTLDAHND--------------------RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred hhhhhccc--------------------eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999998 599999999999999999999999996444
No 6
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-54 Score=410.24 Aligned_cols=537 Identities=15% Similarity=0.225 Sum_probs=437.8
Q ss_pred ceecccccccc---cCCcEEEe---CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcE
Q 038577 3 YRFQNLLGAPY---RGGNAVLS---QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRC 76 (860)
Q Consensus 3 ~~~~~~~g~~~---~~~~~~~s---dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i 76 (860)
|++...+.++- ++-.+.++ .|+.|+|+.+..|.+-++++........+|...++-..|||.|-|+|+|+..|+|
T Consensus 4 ~~lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 4 YELKETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred hhhhhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 55555554443 44456666 7899999999999999999999888888999999999999999999999999999
Q ss_pred EEEEcccCeEE--EEee-cCCceeEEEECCCCCEEEEEeC-----CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE
Q 038577 77 HFINLHCHVVL--HRVR-FKYPVNAILFSPNGKYIAVGTG-----KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN 148 (860)
Q Consensus 77 ~vwd~~~~~~~--~~~~-~~~~v~~~~fspdg~~la~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 148 (860)
+|||....+.+ .+++ ..++|.+++|++|+++|++.++ +.+..||..+. +-.+.||...|.+++
T Consensus 84 RIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S---------vGei~GhSr~ins~~ 154 (603)
T KOG0318|consen 84 RIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS---------VGEITGHSRRINSVD 154 (603)
T ss_pred EEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc---------cceeeccceeEeeee
Confidence 99998764333 3344 7899999999999998887743 35666765543 467899999999999
Q ss_pred EcCCCC-eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCC
Q 038577 149 WSPDSN-YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGND 227 (860)
Q Consensus 149 ~s~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 227 (860)
|-|.-. ++++|++|+.|.+|+-..- +-...+..|...|.++.|+|||. ++++++.||.+.+||-.+++
T Consensus 155 ~KpsRPfRi~T~sdDn~v~ffeGPPF------KFk~s~r~HskFV~~VRysPDG~-----~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 155 FKPSRPFRIATGSDDNTVAFFEGPPF------KFKSSFREHSKFVNCVRYSPDGS-----RFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred ccCCCceEEEeccCCCeEEEeeCCCe------eeeecccccccceeeEEECCCCC-----eEEEecCCccEEEEcCCCcc
Confidence 999764 6999999999999975443 45667788999999999999999 99999999999999988865
Q ss_pred CCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCc
Q 038577 228 GKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE 307 (860)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~ 307 (860)
. ... ...-.+|.+.|.+++|+||+..+++.+.|.++++||+.+.+.++++.....
T Consensus 224 ~----------------------vg~---l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 224 K----------------------VGE---LEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred E----------------------EEE---ecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 3 111 112447899999999999999999999999999999999999988876543
Q ss_pred ---eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577 308 ---KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF 384 (860)
Q Consensus 308 ---~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 384 (860)
....+.|. +..|++.+.. |.|.+++.........+.+|...|++++.+|++++|++|+.||.|.-|+..++..-
T Consensus 279 v~dqqvG~lWq--kd~lItVSl~-G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 279 VEDQQVGCLWQ--KDHLITVSLS-GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred hhceEEEEEEe--CCeEEEEEcC-cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 33344444 5667777666 99999999999988899999999999999999999999999999999999988766
Q ss_pred EEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577 385 VTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWS 463 (860)
Q Consensus 385 ~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d 463 (860)
+.. ..|...|.+++.+..+ .+++++.|.++++.++...........+-..+..+++..+++.++++.+..+ |.+..
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~--iv~l~ 432 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD--IVLLQ 432 (603)
T ss_pred ccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc--EEEEe
Confidence 544 6799999999987644 6889999999999998665544443233344567999999998888888775 55544
Q ss_pred CCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc--eeEEcccCCCeEEEEEeeCCCEEEEEeCCC
Q 038577 464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG--SVESFPHTHDVLTVVYRPDGRQLACSTLDG 541 (860)
Q Consensus 464 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 541 (860)
-.++ +.... -.-...+++++|++..++.|+.||.|++|.+..... ......|.++|+++++|||+.+||++...+
T Consensus 433 ~~~~--~~~~~-~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~r 509 (603)
T KOG0318|consen 433 DQTK--VSSIP-IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASR 509 (603)
T ss_pred cCCc--ceeec-cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCC
Confidence 2222 22222 234568899999999999999999999999987653 334568999999999999999999999999
Q ss_pred eEEEEeCCCCceeEEEec-ccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 542 QIHFWDPLNGELMYTIEG-RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 542 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
.+.+||+.+.+.....-+ |. ..|.+++|||+.+++++|+-|-+|.||+++..
T Consensus 510 kvv~yd~~s~~~~~~~w~FHt--------------------akI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 510 KVVLYDVASREVKTNRWAFHT--------------------AKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred cEEEEEcccCceecceeeeee--------------------eeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 999999999887433322 33 35999999999999999999999999999764
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-51 Score=406.50 Aligned_cols=563 Identities=18% Similarity=0.284 Sum_probs=453.1
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEE-EEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEE
Q 038577 56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVL-HRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFEL 133 (860)
Q Consensus 56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~-~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~ 133 (860)
-.+.|+|||.-+++-. .++|.++|+.+.+.. ..+.+...|++++.||+|.++.+. ..|...+-++.... .
T Consensus 18 Gnl~ft~dG~sviSPv-GNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r~-------V 89 (893)
T KOG0291|consen 18 GNLVFTKDGNSVISPV-GNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSRS-------V 89 (893)
T ss_pred CcEEECCCCCEEEecc-CCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccce-------e
Confidence 4688999999888744 478999999876544 334588999999999999998888 56666666655433 2
Q ss_pred EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccccc--CcccccceEeecCCCcEEEEEEccCCCCCccceEEE
Q 038577 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK--GIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT 211 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~--~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s 211 (860)
++.+. .+.+|.++.|||||+++|.+.. +.+.||......+ -.+.....+..+|-..|.++.|+.|.+ +|++
T Consensus 90 lh~f~-fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr-----~l~~ 162 (893)
T KOG0291|consen 90 LHRFN-FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR-----LLVT 162 (893)
T ss_pred eEEEe-ecCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-----eEEe
Confidence 33333 4678999999999999888865 5899999876633 222234567789999999999999999 9999
Q ss_pred EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577 212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY 291 (860)
Q Consensus 212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~ 291 (860)
+++|.+.++|.++.... .....+.+|...|..+-|..+...+++.+.||.+.+|
T Consensus 163 gsrD~s~rl~~v~~~k~--------------------------~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 163 GSRDLSARLFGVDGNKN--------------------------LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred ccccceEEEEEeccccc--------------------------cceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 99999999999986432 2356678899999999999999999999999999999
Q ss_pred ECCC-----------------------cee-----------EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 292 QMPD-----------------------FVC-----------IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 292 ~~~~-----------------------~~~-----------~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
.... ++. ..-+......+++.+|++.-+.++++-.. |...+|++.
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss-G~f~LyelP 295 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS-GEFGLYELP 295 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC-CeeEEEecC
Confidence 8750 111 11122233678999999988888888776 999999999
Q ss_pred CceEEEEecCcccCeEEEEEcCCCCEEEEEeCC-CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADD-NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416 (860)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 416 (860)
....+..+.-...+|..++|+..|..||.|+.. |.+-||+.++...+...++|...+++++++|||+++++|+.||.|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 999999887777889999999999999998874 7999999999999999999999999999999999999999999999
Q ss_pred EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc-ccCeEEEEEcCCCCEEEEE
Q 038577 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH-EGPVHGLVFSPTNATLASS 495 (860)
Q Consensus 417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~ 495 (860)
+||..++-|+.++..+.. .++.+.|+..|+.+++++-|| +|+.||+...+..+++... .-...|++..|.|..++.|
T Consensus 376 vWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLDG-tVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLDG-TVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecCC-eEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEee
Confidence 999999999999987654 799999999999999999999 9999999999999988754 3446788999999999999
Q ss_pred eCCC-cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecccccCCCccccccc
Q 038577 496 SWDK-TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRR 573 (860)
Q Consensus 496 ~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~ 573 (860)
+.|. .|++|++++|+.+-.+.+|.++|.+++|+|++..|++++.|.+|++||+-.. ..+.+++..++
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sd----------- 522 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSD----------- 522 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccc-----------
Confidence 8886 5999999999988888899999999999999999999999999999998544 45556665554
Q ss_pred cccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCC
Q 038577 574 SAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNS 653 (860)
Q Consensus 574 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (860)
+..++|+|||+.|+++.-||.|.+||...+..+..+. |..+....+....
T Consensus 523 ----------vl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id--------grkD~~~gR~~~D------------ 572 (893)
T KOG0291|consen 523 ----------VLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID--------GRKDLSGGRKETD------------ 572 (893)
T ss_pred ----------eeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc--------chhhccccccccc------------
Confidence 8999999999999999999999999999987765332 2211111110000
Q ss_pred CccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEecccc-EEEEecCCccccCCcccC
Q 038577 654 DTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSIDESFIFDPTDLD 722 (860)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~~~~~~~~~~~~~ 722 (860)
.. ..+.+...-..+.+++|+||..+.+++... +.+|++.+.......++.
T Consensus 573 -~~------------------ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS 623 (893)
T KOG0291|consen 573 -RI------------------TAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQIS 623 (893)
T ss_pred -ee------------------ehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEec
Confidence 00 001111122678999999999998888766 569988765444433333
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-49 Score=380.93 Aligned_cols=519 Identities=18% Similarity=0.246 Sum_probs=413.2
Q ss_pred EEEe-CCCEEEeee-CCeEEEEECCCCcE--EeeccCCccCeeEEEEcCCCCEEEEEcCC----CcEEEEEcccCeEEEE
Q 038577 18 AVLS-QNTKLISPV-GNRVSVTDLIKSKT--VTLPVESSSNICRIAVSPDGTFLLTVDEN----QRCHFINLHCHVVLHR 89 (860)
Q Consensus 18 ~~~s-dg~~l~~~~-~~~i~v~d~~~~~~--~~~~~~h~~~v~~va~spdg~~la~~~~d----~~i~vwd~~~~~~~~~ 89 (860)
+.|| .|-|+|+|. .|+|+|||....+. ...+..-.++|..++|++|+++|+..++. |.+.+|| +|..+..
T Consensus 65 AkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--SG~SvGe 142 (603)
T KOG0318|consen 65 AKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--SGNSVGE 142 (603)
T ss_pred EEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--CCCccce
Confidence 6689 999999985 58999999977443 23344567899999999999999887653 4555665 6777777
Q ss_pred ee-cCCceeEEEECCCCC-EEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEE
Q 038577 90 VR-FKYPVNAILFSPNGK-YIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVR 166 (860)
Q Consensus 90 ~~-~~~~v~~~~fspdg~-~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~ 166 (860)
+. |...|++++|-|... +++++ .|+.|.+|+-+ |++....+..|..-|.|+.|+|||.++++++.||.+.
T Consensus 143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-------PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-------PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-------CeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 76 889999999999764 57777 78999999643 5556788889999999999999999999999999999
Q ss_pred EEeecccccCcccccceEee---cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCC
Q 038577 167 LFYVKEKLKGIHTNKPFLLL---GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPG 243 (860)
Q Consensus 167 vwd~~~~~~~~~~~~~~~~~---~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~ 243 (860)
+||-.++ .....+. +|.+.|.++.|+||++ .+++++.|.++++||+.+...
T Consensus 216 iyDGktg------e~vg~l~~~~aHkGsIfalsWsPDs~-----~~~T~SaDkt~KIWdVs~~sl--------------- 269 (603)
T KOG0318|consen 216 IYDGKTG------EKVGELEDSDAHKGSIFALSWSPDST-----QFLTVSADKTIKIWDVSTNSL--------------- 269 (603)
T ss_pred EEcCCCc------cEEEEecCCCCccccEEEEEECCCCc-----eEEEecCCceEEEEEeeccce---------------
Confidence 9999988 5566666 8999999999999999 999999999999999998643
Q ss_pred CCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEE
Q 038577 244 TPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVF 323 (860)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 323 (860)
.+.|..... -......+.|. .+.|++.+.+|.|.+++......+..+.+|...|+++..+++++++++
T Consensus 270 -----v~t~~~~~~-----v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 270 -----VSTWPMGST-----VEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred -----EEEeecCCc-----hhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence 233332221 11233344454 668999999999999999999999999999999999999999999988
Q ss_pred EEccCCcEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCceEEEEEee
Q 038577 324 GCAKLGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-TEHTNAVTALHFMA 401 (860)
Q Consensus 324 ~~~~~g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~ 401 (860)
++.+ |.|.-|+..++..-... ..|...|.+++-+..+ .+++.+.|.++++.++..+...... ..-.....+++..+
T Consensus 338 gsyD-G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~ 415 (603)
T KOG0318|consen 338 GSYD-GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS 415 (603)
T ss_pred eccC-ceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence 8776 99999999988766544 6799999999988655 4677788889999988643322211 11233345888888
Q ss_pred CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce--EEEecCcccC
Q 038577 402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL--LDILSGHEGP 479 (860)
Q Consensus 402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~--~~~~~~h~~~ 479 (860)
++..++.+..++.+.+=|... .. ..+......+++++|++..+++|+.|+ .+++|.+..+.+ ...+..|.++
T Consensus 416 d~~~avv~~~~~iv~l~~~~~---~~--~~~~~y~~s~vAv~~~~~~vaVGG~Dg-kvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 416 DGGTAVVACISDIVLLQDQTK---VS--SIPIGYESSAVAVSPDGSEVAVGGQDG-KVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred CCCEEEEEecCcEEEEecCCc---ce--eeccccccceEEEcCCCCEEEEecccc-eEEEEEecCCcccceeeeecccCC
Confidence 887777766655444433322 11 222334568999999999999999999 899999987653 3456679999
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577 480 VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 480 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 558 (860)
|+++++|||+.+||++...+.+.+||+.+.+...... -|...|.+++|+|+..++|+|+-|-.|.||+++.....-.++
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik 569 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK 569 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec
Confidence 9999999999999999999999999999887644444 499999999999999999999999999999998775554444
Q ss_pred cccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
+.+. ..|+.+.|-. ...+++.+.|..|++|+++
T Consensus 570 nAH~-------------------~gVn~v~wld-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 570 NAHL-------------------GGVNSVAWLD-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred cccc-------------------cCceeEEEec-CceEEeccCcceeEEeccc
Confidence 3322 2499999964 5578899999999999975
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-50 Score=402.04 Aligned_cols=522 Identities=19% Similarity=0.284 Sum_probs=423.7
Q ss_pred CCCCEEEEEcCCCcEEEEEcccCeEEEEe---ecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEe
Q 038577 62 PDGTFLLTVDENQRCHFINLHCHVVLHRV---RFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTL 137 (860)
Q Consensus 62 pdg~~la~~~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~ 137 (860)
..|+++|+ +..-.|.+||+.+|+....+ +...+++|++-+||.-+||+| .||.|+||+..++. ...++
T Consensus 32 ~~Gr~va~-~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~-------~~~tf 103 (888)
T KOG0306|consen 32 GKGRAVAV-SALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEE-------ILITF 103 (888)
T ss_pred CCCcEEEE-eccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCc-------eeeee
Confidence 35787776 23468999999999554443 345689999999999999999 99999999999875 47889
Q ss_pred eccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCcc
Q 038577 138 ADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY 217 (860)
Q Consensus 138 ~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~ 217 (860)
.||...|+++.|+..|.+|++||.|+.|.+||+-.. .....+.||++.|+...|..+.+ .+++++.|+.
T Consensus 104 ngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E------~Gl~rL~GHkd~iT~~~F~~~~~-----~lvS~sKDs~ 172 (888)
T KOG0306|consen 104 NGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE------EGLFRLRGHKDSITQALFLNGDS-----FLVSVSKDSM 172 (888)
T ss_pred cccccceEEEEEcccCceEeecCCCccEEEEEeccc------eeeEEeecchHHHhHHhccCCCe-----EEEEeccCce
Confidence 999999999999999999999999999999999887 56899999999999999998777 9999999999
Q ss_pred EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC--
Q 038577 218 MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD-- 295 (860)
Q Consensus 218 i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~-- 295 (860)
|++||+++..+ ......|.+.+..+++.+ +.+++++.++.+.+|++..
T Consensus 173 iK~WdL~tqhC----------------------------f~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 173 IKFWDLETQHC----------------------------FETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred EEEEeccccee----------------------------eeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccc
Confidence 99999998654 122234556667777666 5666777777777776610
Q ss_pred ----------------------ceeEEEEe--------------------------------------------------
Q 038577 296 ----------------------FVCIHLLS-------------------------------------------------- 303 (860)
Q Consensus 296 ----------------------~~~~~~~~-------------------------------------------------- 303 (860)
++.+....
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 00000000
Q ss_pred ---------------ecCceeEEEEEeeCCCE---EEEEEccCCcEEEEEccCceE---------EEEecCcccCeEEEE
Q 038577 304 ---------------ISREKITTAVFNELGNW---LVFGCAKLGQLLVWEWRSESY---------ILKQQGHYFDVNCLA 356 (860)
Q Consensus 304 ---------------~~~~~i~~~~~s~~~~~---l~~~~~~~g~i~v~d~~~~~~---------~~~~~~~~~~v~~~~ 356 (860)
.....+.++.+.|.+.. ++. -.+..+..|.++.... ...+.+|...|++++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~--l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL--LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE--eecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 00134666777766532 233 2236777777655211 134578999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCc
Q 038577 357 YSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ 436 (860)
Q Consensus 357 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 436 (860)
+|.+...+++|+. +.+++|+..+.++++++.. +.+.+..|.|.++++++|...|.+.+||+.+...+.+.. .+...
T Consensus 381 vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdga 456 (888)
T KOG0306|consen 381 VSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGA 456 (888)
T ss_pred eecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccc
Confidence 9999877777665 7999999999999999964 488899999999999999999999999999988877777 56678
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEEECCC-----CceEEEec-------CcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 437 FVSLASDQSGEVICAGTLDSFEIFVWSMKT-----GRLLDILS-------GHEGPVHGLVFSPTNATLASSSWDKTVRLW 504 (860)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-----~~~~~~~~-------~h~~~v~~l~~s~~~~~l~s~~~dg~i~iw 504 (860)
+.+++.+||+..+++|+.|. +|++||..- |...+.+. .-...|.|+.+||||++||.+--|.+|+||
T Consensus 457 IWsi~~~pD~~g~vT~saDk-tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy 535 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADK-TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY 535 (888)
T ss_pred eeeeeecCCCCceEEecCCc-EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence 99999999999999999999 999999751 21111111 135679999999999999999999999999
Q ss_pred EccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcE
Q 038577 505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF 584 (860)
Q Consensus 505 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 584 (860)
-+++-+....+.+|.-||.++..|||++++++|+.|.+|++|-++-|.+...+-+|.+ .|
T Consensus 536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD--------------------Sv 595 (888)
T KOG0306|consen 536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD--------------------SV 595 (888)
T ss_pred EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccC--------------------ce
Confidence 9999998888999999999999999999999999999999999999999999999987 59
Q ss_pred EEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCcccccccccc
Q 038577 585 TTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTR 664 (860)
Q Consensus 585 ~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (860)
.++.|-|...++.++|.|+.|+-||-+.-+.++++.
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------------------------------------------- 631 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------------------------------------------- 631 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechhhhhhheeec--------------------------------------------
Confidence 999999999999999999999999988777665443
Q ss_pred CccccCCCCCCCCCCCCccceeEEEECCCCCeEEEecccc-EEEEecCCccccCC
Q 038577 665 GKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSIDESFIFDP 718 (860)
Q Consensus 665 ~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~~~~~~~~~ 718 (860)
| |...+.+++.+|+|+++++++.|- +.+|+..++..+-.
T Consensus 632 --------~-------H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 632 --------G-------HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILE 671 (888)
T ss_pred --------c-------chheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeee
Confidence 2 234689999999999999999977 55999877666543
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.2e-52 Score=381.88 Aligned_cols=339 Identities=23% Similarity=0.367 Sum_probs=300.0
Q ss_pred eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
..+...+.||.++|.|++|+|+|.+|++|+.|.++|+||+.+. .+..+..+|...|.+++|+||++ .|+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te------Tp~~t~KgH~~WVlcvawsPDgk-----~iA 173 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE------TPLFTCKGHKNWVLCVAWSPDGK-----KIA 173 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC------CcceeecCCccEEEEEEECCCcc-----hhh
Confidence 3467788999999999999999999999999999999999998 77899999999999999999999 999
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~ 290 (860)
+|+.||+|++||..++++ ....+.+|...|++++|.|-..
T Consensus 174 SG~~dg~I~lwdpktg~~---------------------------~g~~l~gH~K~It~Lawep~hl------------- 213 (480)
T KOG0271|consen 174 SGSKDGSIRLWDPKTGQQ---------------------------IGRALRGHKKWITALAWEPLHL------------- 213 (480)
T ss_pred ccccCCeEEEecCCCCCc---------------------------ccccccCcccceeEEeeccccc-------------
Confidence 999999999999988754 3456778888888888876321
Q ss_pred EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD 370 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 370 (860)
.|..+.+++++ .||.++|||+..+.++..+.+|..+|+|+.|--+| ++++|+.|
T Consensus 214 ------------------------~p~~r~las~s-kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~D 267 (480)
T KOG0271|consen 214 ------------------------VPPCRRLASSS-KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQD 267 (480)
T ss_pred ------------------------CCCccceeccc-CCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCC
Confidence 12334444443 44888888888888888889999999999998766 89999999
Q ss_pred CcEEEEECCCCeeEEEeecCCCceEEEEEe-----------eCCC-------------------------EEEEEeCCCc
Q 038577 371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFM-----------ANNH-------------------------SLLSASLDGT 414 (860)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-----------~~~~-------------------------~l~s~~~dg~ 414 (860)
++|++|+...|.+.+++++|...|+.++.+ |.++ .+++|+.|.+
T Consensus 268 rtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~t 347 (480)
T KOG0271|consen 268 RTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFT 347 (480)
T ss_pred ceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCce
Confidence 999999999999999999999999999877 2233 4999999999
Q ss_pred EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE
Q 038577 415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLAS 494 (860)
Q Consensus 415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 494 (860)
+.+|+....+....-...+...+..+.||||++++|+++.|. .|++||.++|+.+..|+||-++|..++|+.|.++|++
T Consensus 348 lflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk-SVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 348 LFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK-SVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred EEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccc-ceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 999998766544334445666899999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 495 SSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 495 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
|+.|.++++||+++.+....+.+|..+|.++.|+|||..+++|+.|..+++|.
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999998888889999999999999999999999999999995
No 11
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.8e-52 Score=382.80 Aligned_cols=326 Identities=22% Similarity=0.315 Sum_probs=297.4
Q ss_pred eccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCC
Q 038577 47 LPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGF 124 (860)
Q Consensus 47 ~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~ 124 (860)
.+.||.+.|.|++|||+|+.||+|+.|.++++||+.+..++.+.+ |...|.|++|||||+.||+| .+|.|++||..++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 445999999999999999999999999999999999999999998 99999999999999999999 8999999999998
Q ss_pred CcccceeEEEEEeeccCCCeEEEEEcC-----CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577 125 KKEVFAFELIRTLADCNDKVTALNWSP-----DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV 199 (860)
Q Consensus 125 ~~~~~~~~~~~~~~~h~~~v~~l~~s~-----d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 199 (860)
+. ....+.+|...|++++|-| ..++||+++.||+|+|||+..+ .....+.+|..+|+++.|-.
T Consensus 190 ~~------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------~~~~~lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 190 QQ------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------TCVRTLSGHTASVTCVRWGG 257 (480)
T ss_pred Cc------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc------eEEEEeccCccceEEEEEcC
Confidence 86 5688999999999999965 6789999999999999999998 78999999999999999987
Q ss_pred CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEec------
Q 038577 200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYH------ 273 (860)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------ 273 (860)
++ ++++++.|++|++|+...+.. ...+.+|...|..++.+
T Consensus 258 ~g------liySgS~DrtIkvw~a~dG~~----------------------------~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 258 EG------LIYSGSQDRTIKVWRALDGKL----------------------------CRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred Cc------eEEecCCCceEEEEEccchhH----------------------------HHhhcccchheeeeeccchhhhh
Confidence 76 899999999999999887533 23445555566655544
Q ss_pred -----C-------------------------CCCEEEEEEcCCeEEEEECCC-ceeEEEEeecCceeEEEEEeeCCCEEE
Q 038577 274 -----R-------------------------GLDMVVVGFSNGVFGLYQMPD-FVCIHLLSISREKITTAVFNELGNWLV 322 (860)
Q Consensus 274 -----~-------------------------~~~~l~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~ 322 (860)
| .++.+++|+.|+++.+|+... .+++..+.+|..-|..+.||||+++++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA 383 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA 383 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE
Confidence 2 234699999999999999754 447778889999999999999999999
Q ss_pred EEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577 323 FGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN 402 (860)
Q Consensus 323 ~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 402 (860)
+++.+ ..|++|+.++|+.+..+++|-..|..++|+.|.++|++|+.|.++++|++++.+....+.+|.+.|.++.|+||
T Consensus 384 SaSFD-kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 384 SASFD-KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred Eeecc-cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 99887 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEE
Q 038577 403 NHSLLSASLDGTVRAWD 419 (860)
Q Consensus 403 ~~~l~s~~~dg~i~~wd 419 (860)
|..+++|+.|..+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999999999999994
No 12
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-45 Score=365.84 Aligned_cols=561 Identities=17% Similarity=0.219 Sum_probs=409.6
Q ss_pred ccccccc-CCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEc--CCCcEEEEEccc
Q 038577 8 LLGAPYR-GGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVD--ENQRCHFINLHC 83 (860)
Q Consensus 8 ~~g~~~~-~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~--~d~~i~vwd~~~ 83 (860)
.+|..-. +..++.+ -...+||+.|..|.+||++..++.++...|+..++|+||||+|+|+|+|- ....++||++..
T Consensus 32 VlGlTv~~~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~ 111 (1080)
T KOG1408|consen 32 VLGLTVKNANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAF 111 (1080)
T ss_pred hhceEeecCCcccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecc
Confidence 3443333 3346666 66689999999999999999999999989999999999999999999974 678899999999
Q ss_pred CeEEEEee-cCCceeEEEECCCCCEEEEE---eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577 84 HVVLHRVR-FKYPVNAILFSPNGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159 (860)
Q Consensus 84 ~~~~~~~~-~~~~v~~~~fspdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 159 (860)
...+..+. |+..|+|++|+|.++|+++. .|-.|.+||+...-. ..-..-...|..++|+.||.|+++.
T Consensus 112 h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~--------~asnkiss~Vsav~fsEdgSYfvT~ 183 (1080)
T KOG1408|consen 112 HGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSS--------GASNKISSVVSAVAFSEDGSYFVTS 183 (1080)
T ss_pred ccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccc--------ccccccceeEEEEEEccCCceeeee
Confidence 88888877 99999999999999999976 455777888765421 1112235678999999999999998
Q ss_pred ecCCeEEEEeecccccCcccccceEeec----------------------------------C-----------------
Q 038577 160 SKDLAVRLFYVKEKLKGIHTNKPFLLLG----------------------------------H----------------- 188 (860)
Q Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~----------------------------------h----------------- 188 (860)
+. ..|++|.++.+.+. ..+..+.+ |
T Consensus 184 gn-rHvk~wyl~~~~Ky---kdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcR 259 (1080)
T KOG1408|consen 184 GN-RHVKLWYLQIQSKY---KDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCR 259 (1080)
T ss_pred ee-eeEEEEEeeccccc---cCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhh
Confidence 75 69999999877311 11111111 1
Q ss_pred CCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCcc--ccCCCCCCCCCCCcceeeeEEeeeeccccCCCCc
Q 038577 189 RDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDE--TMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK 266 (860)
Q Consensus 189 ~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (860)
.....+++.+ .. +|+.++.+|.|++++.++-...... ............ .-........++.-..
T Consensus 260 TTnAnCIcVs--~r-----~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~------q~~~~~s~~~~a~fPD 326 (1080)
T KOG1408|consen 260 TTNANCICVS--SR-----LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLS------QPEPKNSESSPAIFPD 326 (1080)
T ss_pred ccccceeeee--cc-----eEEEeeccceeeecCcchhhhccccccccccccchhhcc------cccccccccCcccCCc
Confidence 0011122332 33 8999999999999998764321100 000000000000 0000000111111223
Q ss_pred eEEEEecCCCCEEEEEEcCCeEEEEECCCceeE---EEEeecCceeEEEEEeeC------C----CEEEEEEccCCcEEE
Q 038577 267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCI---HLLSISREKITTAVFNEL------G----NWLVFGCAKLGQLLV 333 (860)
Q Consensus 267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~---~~~~~~~~~i~~~~~s~~------~----~~l~~~~~~~g~i~v 333 (860)
..++.|++....+.+...|..+++||+.+-..+ ..+-.|...|..+..-|- . +--+++++.|++|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 567889999999999999999999999865443 233345555555544331 0 112455566699999
Q ss_pred EEccCceEEEE-------------------------------------ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 334 WEWRSESYILK-------------------------------------QQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376 (860)
Q Consensus 334 ~d~~~~~~~~~-------------------------------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 376 (860)
|++..+..-.. .......+++++.+|+|++||+|..-|++++|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 99876211000 01122358999999999999999999999999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEeeC---CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCC--CEEEE
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFMAN---NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG--EVICA 451 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~~~---~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~ 451 (860)
++..-+....+..|...|.|+.|+.. .+.|++++.|.-|.+||+...-....-...+...++++.|...| ..+++
T Consensus 487 ~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mis 566 (1080)
T KOG1408|consen 487 DLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMIS 566 (1080)
T ss_pred EehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEe
Confidence 99999888899999999999999852 46899999999999999976544444444556689999988777 66667
Q ss_pred EecCCCeEEEEECCC-CceEEEecC-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc---cCCCe
Q 038577 452 GTLDSFEIFVWSMKT-GRLLDILSG-----HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP---HTHDV 522 (860)
Q Consensus 452 ~~~~~~~i~v~d~~~-~~~~~~~~~-----h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v 522 (860)
++.|. .|+ |+... ..-...+.. ....+.+++..|..+++++++.|+.|+|||+.+++....+.+ |.+..
T Consensus 567 cGADk-sim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~l 644 (1080)
T KOG1408|consen 567 CGADK-SIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDL 644 (1080)
T ss_pred ccCch-hhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCce
Confidence 77775 443 33332 111111211 245789999999999999999999999999999997777764 67788
Q ss_pred EEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577 523 LTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS 602 (860)
Q Consensus 523 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 602 (860)
..+...|.|-|+|+.+.|.++.++|..+|+++..+.+|... |+.+.|++|-+.|++.+.|
T Consensus 645 IKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~--------------------VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 645 IKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA--------------------VTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred EEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh--------------------eeeeeecccchhheeecCC
Confidence 99999999999999999999999999999999999999874 9999999999999999999
Q ss_pred CeEEEEECCCceE
Q 038577 603 KYICMYDVADQVL 615 (860)
Q Consensus 603 g~v~vwd~~~~~~ 615 (860)
|+|.||.+.....
T Consensus 705 gCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 705 GCIFVWKLPLTMI 717 (1080)
T ss_pred ceEEEEECchhHh
Confidence 9999999986443
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-43 Score=349.69 Aligned_cols=510 Identities=19% Similarity=0.232 Sum_probs=381.5
Q ss_pred cEEEe-CCCEEEeeeCC---eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC--CCcEEEEEcccCeEEEEe
Q 038577 17 NAVLS-QNTKLISPVGN---RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE--NQRCHFINLHCHVVLHRV 90 (860)
Q Consensus 17 ~~~~s-dg~~l~~~~~~---~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~--d~~i~vwd~~~~~~~~~~ 90 (860)
.++|| +|+|+++|.-| .++||+++..-++..+..|...|+|++|||.++|+++.+. |-.|.+||+........-
T Consensus 83 ~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asn 162 (1080)
T KOG1408|consen 83 CVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASN 162 (1080)
T ss_pred EEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccccc
Confidence 69999 99999998633 4999999999998888899999999999999999998765 556778998877666665
Q ss_pred ecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEE------------------------------EEeecc
Q 038577 91 RFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELI------------------------------RTLADC 140 (860)
Q Consensus 91 ~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~------------------------------~~~~~h 140 (860)
+....|.+++|+.||.|+++.+...|++|.++.+++...+.++. .+-.||
T Consensus 163 kiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGh 242 (1080)
T KOG1408|consen 163 KISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGH 242 (1080)
T ss_pred ccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccc
Confidence 66788999999999999999999999999998776322111100 000011
Q ss_pred -----------------CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccc---------------eEeec-
Q 038577 141 -----------------NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKP---------------FLLLG- 187 (860)
Q Consensus 141 -----------------~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~---------------~~~~~- 187 (860)
+....|++.+ .+++++|+.+|.|++++..+.. ...+... ....+
T Consensus 243 LvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~-y~~Tlpr~halg~d~a~~~q~~~~~s~~ 319 (1080)
T KOG1408|consen 243 LVEFSSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLD-YAGTLPRSHALGSDTANLSQPEPKNSES 319 (1080)
T ss_pred eeeechhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhh-hccccccccccccchhhccccccccccc
Confidence 0112344443 5799999999999999877651 1000000 00000
Q ss_pred ---CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCC
Q 038577 188 ---HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAP 264 (860)
Q Consensus 188 ---h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (860)
.--...++.|.+... .|.....|..+++||+..-...-... ....-....|.+..... .-+.
T Consensus 320 ~~a~fPD~IA~~Fdet~~-----klscVYndhSlYvWDvrD~~kvgk~~---------s~lyHS~ciW~Ve~~p~-nv~~ 384 (1080)
T KOG1408|consen 320 SPAIFPDAIACQFDETTD-----KLSCVYNDHSLYVWDVRDVNKVGKCS---------SMLYHSACIWDVENLPC-NVHS 384 (1080)
T ss_pred CcccCCceeEEEecCCCc-----eEEEEEcCceEEEEecccccccccee---------eeeeccceeeeeccccc-cccC
Confidence 001234678888877 89999999999999998632100000 00000012343322111 1111
Q ss_pred CceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE-------------------------------------EeecCc
Q 038577 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL-------------------------------------LSISRE 307 (860)
Q Consensus 265 ~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~-------------------------------------~~~~~~ 307 (860)
. +..+ -|. ..+++++.||+|++|++..+..-.. .-....
T Consensus 385 ~--~~ac-lp~-~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~ 460 (1080)
T KOG1408|consen 385 P--TAAC-LPR-GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRF 460 (1080)
T ss_pred c--cccc-CCc-cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCccc
Confidence 1 1111 122 2488999999999999874211111 011124
Q ss_pred eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEECCC-Cee
Q 038577 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP---DSQLLATGADDNKVKVWTVSS-GFC 383 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~-~~~ 383 (860)
.+++++.+|+|++|+.+..- |.++||++..-+.......|..+|.|+.|+. ..++||+++.|.-|.+||... ...
T Consensus 461 G~R~~~vSp~gqhLAsGDr~-GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLASGDRG-GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred ceEEEEECCCcceecccCcc-CceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 68999999999999988766 9999999999999999999999999999986 356899999999999999874 456
Q ss_pred EEEeecCCCceEEEEEeeCC--CEEEEEeCCCcEEEEEccccceeeEee----CCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577 384 FVTFTEHTNAVTALHFMANN--HSLLSASLDGTVRAWDLFRYRNFRTFT----TPSSRQFVSLASDQSGEVICAGTLDSF 457 (860)
Q Consensus 384 ~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (860)
++++.+|...|+++.|..+| ..++++|.|..|.+--..+...-+.+. ......+..+++.|..+++++++.|.
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr- 618 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR- 618 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc-
Confidence 77899999999999998877 789999999877654333222222222 22345688999999999999999999
Q ss_pred eEEEEECCCCceEEEecC---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEE
Q 038577 458 EIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQL 534 (860)
Q Consensus 458 ~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 534 (860)
.|+|||+++|+..+.|++ |.+..-.+...|.|-|+|+...|+++.++|..++++.....+|...|+.+.|.+|-+.|
T Consensus 619 nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHl 698 (1080)
T KOG1408|consen 619 NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHL 698 (1080)
T ss_pred ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhh
Confidence 999999999999999975 66778889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCC
Q 038577 535 ACSTLDGQIHFWDPLN 550 (860)
Q Consensus 535 ~~~~~dg~i~iwd~~~ 550 (860)
++.+.||.|.||.+..
T Consensus 699 ISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 699 ISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeecCCceEEEEECch
Confidence 9999999999999864
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.9e-43 Score=330.36 Aligned_cols=283 Identities=25% Similarity=0.375 Sum_probs=267.7
Q ss_pred ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 038577 304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD--SQLLATGADDNKVKVWTVSSG 381 (860)
Q Consensus 304 ~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~ 381 (860)
+...++..+.|+.|++.+++++-. |.+++|+..+...+.++.+|...+.++.|+|. +..+|+++.||++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~sws-G~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWS-GLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecC-CceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 345689999999999999999887 99999999999999999999999999999997 669999999999999999999
Q ss_pred eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577 382 FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV 461 (860)
Q Consensus 382 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v 461 (860)
..+..+.+|...|..++|+|+|++|.+++.|.+-++||+.++...-.. ..+...+.+++|.+||.++++|+.|. .-+|
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGSL~~tGGlD~-~~Rv 329 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGSLAATGGLDS-LGRV 329 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCceeeccCccc-hhhe
Confidence 999999999999999999999999999999999999999887765443 45566899999999999999999999 8999
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCEEEEEeCC
Q 038577 462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQLACSTLD 540 (860)
Q Consensus 462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d 540 (860)
||+++|+.+-.+.+|..+|.+++|+|+|..|||||.|++++|||++....+..+.+|..-|+.+.|+| .|.+|++++.|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 99999999999999999999999999999999999999999999999988888889999999999999 78899999999
Q ss_pred CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 541 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
+++++|...++.++.++.||.+ .|.++.+++||+++++++.|.++++|.
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~--------------------kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEG--------------------KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccchhhcCCcc--------------------ceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999987 499999999999999999999999995
No 15
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=7.6e-40 Score=325.15 Aligned_cols=562 Identities=16% Similarity=0.169 Sum_probs=408.6
Q ss_pred EeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCC---EEEEEcCCCcEEEEEcccCeEEEEeecC-Cc
Q 038577 20 LSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGT---FLLTVDENQRCHFINLHCHVVLHRVRFK-YP 95 (860)
Q Consensus 20 ~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~---~la~~~~d~~i~vwd~~~~~~~~~~~~~-~~ 95 (860)
+.-+..+++|.+..|.+||.........+.||...|+|+.+-|+.+ ++++|+.|++|++|.+...........+ ..
T Consensus 22 w~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~ 101 (764)
T KOG1063|consen 22 WGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC 101 (764)
T ss_pred ccccceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc
Confidence 3445689999999999999999988888889999999999999988 8999999999999999854444333322 45
Q ss_pred eeEEEECCCCCEEEE-EeCCeEEEEeCCCCCcccceeEEEEEeecc--CCCeEEEEEcCC-CC-eEEEeecCCeEEEEee
Q 038577 96 VNAILFSPNGKYIAV-GTGKLVQIWRSPGFKKEVFAFELIRTLADC--NDKVTALNWSPD-SN-YLLVGSKDLAVRLFYV 170 (860)
Q Consensus 96 v~~~~fspdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~d-~~-~l~s~~~dg~v~vwd~ 170 (860)
+.++++...-....+ +.++.+.+||.+..+ +-+...+.-. ..--.|+++.|+ +. .++.|+.+..|.++.-
T Consensus 102 ~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e-----~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 102 KECVCVVARSSVMTCKAADGTVSVWDKQQDE-----VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred eeEEEEEeeeeEEEeeccCceEEEeecCCCc-----eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 666777654433333 389999999994433 1122222222 222356666663 33 3455666777777766
Q ss_pred cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcce--
Q 038577 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR-- 248 (860)
Q Consensus 171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (860)
... +. .....+.||.+.|.+++|...+. ...+|++++.|..|++|.+.-.........+.........+...
T Consensus 177 ~~d-~f---~~v~el~GH~DWIrsl~f~~~~~--~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l 250 (764)
T KOG1063|consen 177 SAD-SF---ARVAELEGHTDWIRSLAFARLGG--DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL 250 (764)
T ss_pred CCc-ce---eEEEEeeccchhhhhhhhhccCC--CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence 533 22 56788999999999999976543 22389999999999999987654322111111000000011100
Q ss_pred -eeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc--eeEEEE-----eecCceeEEEEEeeCCCE
Q 038577 249 -VKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF--VCIHLL-----SISREKITTAVFNELGNW 320 (860)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~--~~~~~~-----~~~~~~i~~~~~s~~~~~ 320 (860)
--.+.+.....+.+|...|.++.|+|.+..|++++.|.++.+|...+. --.... .+........-|+|+++.
T Consensus 251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ 330 (764)
T KOG1063|consen 251 EEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNV 330 (764)
T ss_pred eeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCE
Confidence 112344445667799999999999999999999999999999987654 222222 223445888999999988
Q ss_pred EEEEEccCCcEEEEEccCc---eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeeEEEeecCCCc
Q 038577 321 LVFGCAKLGQLLVWEWRSE---SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS----GFCFVTFTEHTNA 393 (860)
Q Consensus 321 l~~~~~~~g~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~ 393 (860)
+++-+.. |..++|..+.. .....+.+|...|+.++|.|.|.+|++.+.|.+-|+|-.-. ...+...+-|...
T Consensus 331 ii~~g~~-Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyD 409 (764)
T KOG1063|consen 331 IIAHGRT-GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYD 409 (764)
T ss_pred EEEeccc-CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccccc
Confidence 8877666 99999983332 22333478999999999999999999999999999987541 1234445568899
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEccc-------------------------------------------cce----e
Q 038577 394 VTALHFMANNHSLLSASLDGTVRAWDLFR-------------------------------------------YRN----F 426 (860)
Q Consensus 394 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-------------------------------------------~~~----~ 426 (860)
++|+++-+....+++|..+..+|+|+... +.. .
T Consensus 410 l~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~ 489 (764)
T KOG1063|consen 410 LTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCA 489 (764)
T ss_pred ceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceee
Confidence 99999988667899999999999998611 000 0
Q ss_pred eEe--------e--------------------CCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCceEEEec
Q 038577 427 RTF--------T--------------------TPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGRLLDILS 474 (860)
Q Consensus 427 ~~~--------~--------------------~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~~~~~~~ 474 (860)
.+. . ..+...+.+++.+|+|+++|+++... ..|++|+..+......+.
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~ 569 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE 569 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec
Confidence 000 0 11334789999999999999988654 279999999999999999
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce----eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS----VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 475 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
+|.-.|+.++|||||++|++++.|+++.+|........ .....|..-|.+..|+|++.++++++.|.+|++|....
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPD 649 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccC
Confidence 99999999999999999999999999999998554321 22447999999999999999999999999999999887
Q ss_pred C--ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC-----CCEEEEecCCCeEEEEECC
Q 038577 551 G--ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD-----GSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 551 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~-----g~~l~~~~~dg~v~vwd~~ 611 (860)
. +.+..+.. ...+.+|+++++.|- +..+++|-+.|.|.+|...
T Consensus 650 ~~d~~i~~~a~------------------~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 650 LRDKYISRFAC------------------LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred chhhhhhhhch------------------hccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 7 33332211 122356899998762 3366778889999999865
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.5e-43 Score=325.72 Aligned_cols=283 Identities=21% Similarity=0.404 Sum_probs=270.5
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC--CCEEEEEEccCCcEEEEEccCc
Q 038577 262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL--GNWLVFGCAKLGQLLVWEWRSE 339 (860)
Q Consensus 262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~~~g~i~v~d~~~~ 339 (860)
+...++..+.|+++++.+++|+-+|.+.+|+.++...++++.+|...+.++.|+|. +..+++++.+ |++++|++.+.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D-gtvklw~~~~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD-GTVKLWKLSQE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC-CceeeeccCCC
Confidence 45678999999999999999999999999999999999999999999999999998 4567766655 99999999999
Q ss_pred eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577 340 SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419 (860)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 419 (860)
..+..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.+||..+++||.|..-++||
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWD 331 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC-CCCEEEEEeCC
Q 038577 420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP-TNATLASSSWD 498 (860)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d 498 (860)
+++++++-.+.. +..+|.++.|+|+|-.+|+|+.|+ +++|||++..+.+.++.+|.+-|+.+.|+| .|.+|+|++.|
T Consensus 332 lRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn-t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 332 LRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDN-TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cccCcEEEEecc-cccceeeEeECCCceEEeecCCCC-cEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 999999998887 667999999999999999999999 999999999999999999999999999999 78899999999
Q ss_pred CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 499 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
+++++|...+..++..+.+|.+.|.++.++||++++++++.|.++++|.
T Consensus 410 ~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999999999999999999999999999999999999999999995
No 17
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=5.3e-40 Score=333.14 Aligned_cols=481 Identities=18% Similarity=0.239 Sum_probs=387.1
Q ss_pred CCEEEe-eeCCeEEEEECCCC-----cEEeeccCCccCeeEEEEcCCC--CEEEEEcCCCcEEEEEcccCeEEEEee-cC
Q 038577 23 NTKLIS-PVGNRVSVTDLIKS-----KTVTLPVESSSNICRIAVSPDG--TFLLTVDENQRCHFINLHCHVVLHRVR-FK 93 (860)
Q Consensus 23 g~~l~~-~~~~~i~v~d~~~~-----~~~~~~~~h~~~v~~va~spdg--~~la~~~~d~~i~vwd~~~~~~~~~~~-~~ 93 (860)
|.+++. -.++.+.||+..++ .+..+.......|+++ ++|.- +.++.|+..|.+.+||+.+++.+++++ +.
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~ 202 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF 202 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccc
Confidence 444444 35678999998884 1222332333337776 56653 557889999999999999999999999 78
Q ss_pred CceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCC-eEEEeecCCeEEEEeec
Q 038577 94 YPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN-YLLVGSKDLAVRLFYVK 171 (860)
Q Consensus 94 ~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~v~vwd~~ 171 (860)
..|+++.=+|-=..+|+| .+|.|.++++..++ .+..+....++|+.++|..||+ .||+|+..|.+.+||++
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk-------il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe 275 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKFDK-------ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLE 275 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEcccCc-------EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcC
Confidence 999999999999999999 99999999999988 4677775569999999999996 56677778999999999
Q ss_pred ccccCcccccc-eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577 172 EKLKGIHTNKP-FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK 250 (860)
Q Consensus 172 ~~~~~~~~~~~-~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (860)
.. ... .....|.+.|....|.|... .+++.+.|..+++|-.++++..
T Consensus 276 ~k------kl~~v~~nah~~sv~~~~fl~~ep-----Vl~ta~~DnSlk~~vfD~~dg~--------------------- 323 (910)
T KOG1539|consen 276 KK------KLINVTRNAHYGSVTGATFLPGEP-----VLVTAGADNSLKVWVFDSGDGV--------------------- 323 (910)
T ss_pred CC------eeeeeeeccccCCcccceecCCCc-----eEeeccCCCceeEEEeeCCCCc---------------------
Confidence 87 334 34457999999999999988 9999999999999988765430
Q ss_pred eEEeeeeccccCCCCceEEEEec-CCCCEEEEEEcCCeEEEEECCCceeEEE------------------EeecCceeEE
Q 038577 251 KWGLLRKDDFSQAPSKVTACDYH-RGLDMVVVGFSNGVFGLYQMPDFVCIHL------------------LSISREKITT 311 (860)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~g~i~~~~~~~~~~~~~------------------~~~~~~~i~~ 311 (860)
-+ ....-.+|..+..|+.|. .+|..+..+..|++++.+++.....-+. ....-.+|..
T Consensus 324 -pR--~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 324 -PR--LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred -ch--heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 00 112235788899999998 6788899999999999887642211110 1111235666
Q ss_pred EEEeeC----CCEEEEEEccCCcEEEEEccCceE-EEEe-----cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577 312 AVFNEL----GNWLVFGCAKLGQLLVWEWRSESY-ILKQ-----QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381 (860)
Q Consensus 312 ~~~s~~----~~~l~~~~~~~g~i~v~d~~~~~~-~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 381 (860)
+++... -..++++..++...+.|++++... ...+ +.....+++++.++.|++.+.|+..|.|-+|++++|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 666542 245677777778999999987654 2222 123367899999999999999999999999999999
Q ss_pred eeEEEe---ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577 382 FCFVTF---TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458 (860)
Q Consensus 382 ~~~~~~---~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (860)
.....+ ..|.++|++++...-++.+++++.+|-+.+||+.+......+.... .+.++..+.....++++..+- .
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~--~~~~iv~hr~s~l~a~~~ddf-~ 557 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS--SITGIVYHRVSDLLAIALDDF-S 557 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCC--CcceeeeeehhhhhhhhcCce-e
Confidence 998888 5899999999999888999999999999999999888777766554 567888888888888888887 9
Q ss_pred EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577 459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST 538 (860)
Q Consensus 459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 538 (860)
|.++|..+.+.++.+.||.+.|++++|||||++|++++.|++|++||+.++. +........+++++.|||+|.+||++.
T Consensus 558 I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~-lID~~~vd~~~~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 558 IRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT-LIDGLLVDSPCTSLSFSPNGDFLATVH 636 (910)
T ss_pred EEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc-eeeeEecCCcceeeEECCCCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999997 555566788999999999999999999
Q ss_pred CC-CeEEEEeCCC
Q 038577 539 LD-GQIHFWDPLN 550 (860)
Q Consensus 539 ~d-g~i~iwd~~~ 550 (860)
.| .-|++|.-.+
T Consensus 637 vd~~gIylWsNks 649 (910)
T KOG1539|consen 637 VDQNGIYLWSNKS 649 (910)
T ss_pred ecCceEEEEEchh
Confidence 88 4599997443
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-39 Score=315.29 Aligned_cols=468 Identities=18% Similarity=0.267 Sum_probs=360.0
Q ss_pred CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcc
Q 038577 50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKE 127 (860)
Q Consensus 50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~ 127 (860)
.++..|.++.|+|...+++++-.+|+|.|||.++...++.+. ..-||++..|-+...++++| .|..|+||+.+++++
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ek- 89 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEK- 89 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccccee-
Confidence 588999999999999999999999999999999999999999 78899999999999999999 778999999999984
Q ss_pred cceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccc
Q 038577 128 VFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN 207 (860)
Q Consensus 128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~ 207 (860)
+..+..|.+.|.+++.+|...++++++.|..|++||.+.. . .+.+++.||...|.+++|.|...+
T Consensus 90 ------V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--w---a~~qtfeGH~HyVMqv~fnPkD~n---- 154 (794)
T KOG0276|consen 90 ------VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--W---ACEQTFEGHEHYVMQVAFNPKDPN---- 154 (794)
T ss_pred ------eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc--e---eeeeEEcCcceEEEEEEecCCCcc----
Confidence 8999999999999999999999999999999999999987 2 467899999999999999997765
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV 287 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 287 (860)
.+++++-|++|++|++....+ ...+.+|...|.|+.+-+.|
T Consensus 155 tFaS~sLDrTVKVWslgs~~~----------------------------nfTl~gHekGVN~Vdyy~~g----------- 195 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPHP----------------------------NFTLEGHEKGVNCVDYYTGG----------- 195 (794)
T ss_pred ceeeeeccccEEEEEcCCCCC----------------------------ceeeeccccCcceEEeccCC-----------
Confidence 999999999999998876432 22334555555555554433
Q ss_pred EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577 288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG 367 (860)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 367 (860)
|..++++++ +|..++|||.++..++.++.+|...|.++.|+|.-..+++|
T Consensus 196 -----------------------------dkpylIsga-DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 196 -----------------------------DKPYLISGA-DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred -----------------------------CcceEEecC-CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 123444443 44788888888888888889999999999999999999999
Q ss_pred eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC
Q 038577 368 ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE 447 (860)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (860)
+.||+++||+..+.+...++.-.-..+++++-.+.++.++.|..+|.+.+ .+-. ....+..++.|+
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgr-------------eeP~vsMd~~gK 311 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGR-------------EEPAVSMDSNGK 311 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccC-------------CCCceeecCCcc
Confidence 99999999999998888888878889999999998888888888877654 2211 224556667776
Q ss_pred EEEEEecCCCeEEEEE------CCCCceEE----EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc
Q 038577 448 VICAGTLDSFEIFVWS------MKTGRLLD----ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP 517 (860)
Q Consensus 448 ~l~~~~~~~~~i~v~d------~~~~~~~~----~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 517 (860)
.+.+....-..+.+-. +..|+.+. .+-.-.--...++.+|+|++++.|+ ||.-.||..-. -...
T Consensus 312 Iiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala-----~RnK 385 (794)
T KOG0276|consen 312 IIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALA-----LRNK 385 (794)
T ss_pred EEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeee-----hhhc
Confidence 6665544221222222 22232221 1111111224578899999887776 88888887322 2223
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597 (860)
Q Consensus 518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 597 (860)
..+......|++|.+..++-..++.|+++ ++++....+...- . +.+- -|-.|+
T Consensus 386 ~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~----------------------~--~e~i-~gg~Ll 438 (794)
T KOG0276|consen 386 AFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM----------------------S--AEGI-FGGPLL 438 (794)
T ss_pred ccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc----------------------c--eeee-cCCceE
Confidence 55667889999998888888888999999 6666665554321 1 1111 234455
Q ss_pred EecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCC
Q 038577 598 AGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPN 677 (860)
Q Consensus 598 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 677 (860)
....++.+++||-+++++++++..
T Consensus 439 g~~ss~~~~fydW~~~~lVrrI~v-------------------------------------------------------- 462 (794)
T KOG0276|consen 439 GVRSSDFLCFYDWESGELVRRIEV-------------------------------------------------------- 462 (794)
T ss_pred EEEeCCeEEEEEcccceEEEEEee--------------------------------------------------------
Confidence 555667799999999999986642
Q ss_pred CCCCccceeEEEECCCCCeEEEeccccEEEEecC
Q 038577 678 RGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSID 711 (860)
Q Consensus 678 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~~~ 711 (860)
.++.+.++.+|.+.+.++.+..+++..+
T Consensus 463 ------~~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 463 ------TSKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred ------ccceeEEecCCCEEEEEecCceeEEEec
Confidence 4677889999999999999997665554
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.6e-40 Score=291.40 Aligned_cols=291 Identities=19% Similarity=0.273 Sum_probs=263.9
Q ss_pred EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCC
Q 038577 45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSP 122 (860)
Q Consensus 45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~ 122 (860)
..++.||.+.|.++.|++|+++|++++.||.+.|||.-+...++-++ ....|..++|+|.|.++|.| -|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 36778999999999999999999999999999999999988888888 56789999999999999999 78999999998
Q ss_pred CCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc-CC
Q 038577 123 GFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV-DK 201 (860)
Q Consensus 123 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~-~~ 201 (860)
+..... ..+..+.+.+|.+.+.|+.|.+|+ .|++++.|.+..+||++++ .....+.+|.+.|.++.++| ++
T Consensus 128 ~~d~~g-~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g------~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 128 TRDAEG-NVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETG------QQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred cccccc-cceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccc------eEEEEecCCcccEEEEecCCCCC
Confidence 653211 223567899999999999999854 6999999999999999999 78899999999999999999 77
Q ss_pred CCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577 202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV 281 (860)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 281 (860)
+ .+++++-|+..++||+..+.. .+.|.+|.+.|.++.|.|+|.-+++
T Consensus 200 n-----tFvSg~cD~~aklWD~R~~~c----------------------------~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 200 N-----TFVSGGCDKSAKLWDVRSGQC----------------------------VQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred C-----eEEecccccceeeeeccCcce----------------------------eEeecccccccceEEEccCCCeeee
Confidence 7 999999999999999998644 6788999999999999999999999
Q ss_pred EEcCCeEEEEECCCceeEEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577 282 GFSNGVFGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 282 ~~~~g~i~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 359 (860)
|+.|++.++||+...+.+..+.... .+|++++||..|+.|+++..+ ..+.+||.-.++.+..+.+|...|.|+..+|
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d-~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~ 325 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDD-FTCNVWDTLKGERVGVLAGHENRVSCLGVSP 325 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecC-CceeEeeccccceEEEeeccCCeeEEEEECC
Confidence 9999999999999988888776543 479999999999999988655 9999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEE
Q 038577 360 DSQLLATGADDNKVKVWT 377 (860)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd 377 (860)
||..+++|+.|..++||.
T Consensus 326 DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 326 DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCcEEEecchhHheeecC
Confidence 999999999999999994
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=289.79 Aligned_cols=290 Identities=25% Similarity=0.419 Sum_probs=264.0
Q ss_pred ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
....+++||.+.|.++.|++|.+ ++++++.||.+.+||.-+.. +...
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr-----~ivSaSqDGklIvWDs~Ttn----------------------------K~ha 92 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSR-----RIVSASQDGKLIVWDSFTTN----------------------------KVHA 92 (343)
T ss_pred eeEEEecccccceeeeEecCCcC-----eEEeeccCCeEEEEEccccc----------------------------ceeE
Confidence 34578999999999999999999 99999999999999987642 2344
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc------eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEE
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF------VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLV 333 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~------~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v 333 (860)
++-....|..++|+|.|+.+|+|+-|+...||++.+. ...+.+.+|.+-+.++.|.+| ..|++++++ .+..+
T Consensus 93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD-~TCal 170 (343)
T KOG0286|consen 93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGD-MTCAL 170 (343)
T ss_pred EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCC-ceEEE
Confidence 4556678999999999999999999999999999854 345678899999999999984 456666655 99999
Q ss_pred EEccCceEEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC
Q 038577 334 WEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412 (860)
Q Consensus 334 ~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 412 (860)
||+++++.+..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.++|.+|.+.|.+++|.|+|.-+++|+.|
T Consensus 171 WDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 171 WDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred EEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 038577 413 GTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT 491 (860)
Q Consensus 413 g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 491 (860)
++.++||++..+.+..+..+ ....+++++||..|++|++|..|. .+.+||.-.++.+..+.+|.+.|+++..+|||.-
T Consensus 251 ~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~-~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 251 ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF-TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC-ceeEeeccccceEEEeeccCCeeEEEEECCCCcE
Confidence 99999999999888887744 345789999999999999998887 9999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEE
Q 038577 492 LASSSWDKTVRLWN 505 (860)
Q Consensus 492 l~s~~~dg~i~iwd 505 (860)
+++|++|.+++||.
T Consensus 330 v~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 330 VATGSWDSTLRIWA 343 (343)
T ss_pred EEecchhHheeecC
Confidence 99999999999994
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.8e-40 Score=283.95 Aligned_cols=282 Identities=20% Similarity=0.348 Sum_probs=259.4
Q ss_pred CEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEE
Q 038577 277 DMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNC 354 (860)
Q Consensus 277 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~ 354 (860)
-+|++++.|-+|++|...+|.+..+++.....|..+.+.|+++.|++++. ..|++||+.++. ++..+.+|...|++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~--qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN--QHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC--CeeEEEEccCCCCCceeEEeccCCceEE
Confidence 36889999999999999999999999999999999999999999999876 699999998865 57888999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC
Q 038577 355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS 434 (860)
Q Consensus 355 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 434 (860)
+.|..+|+.+++|++||+++|||++...+.+.+. |..+|+++..+|+...|+++..+|.|++||+....+...+.....
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 9999999999999999999999999976666664 789999999999999999999999999999999988888887777
Q ss_pred CcEEEEEECCCCCEEEEEecCCCeEEEEECCCC------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577 435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 508 (860)
..+.++.+.|||.+++++...| ..++|++-+. +++..++.|.+-+..+.+|||+++||++|.|.+++||+.++
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG-~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKG-NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCc-cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 8999999999999999998888 9999998754 45677889999999999999999999999999999999988
Q ss_pred C-cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577 509 G-KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD 562 (860)
Q Consensus 509 ~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 562 (860)
. +....+.+|...+...+||.||+||++|+.|+.+++|++..++.+....+|..
T Consensus 247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 7 44455668999999999999999999999999999999999999999999875
No 22
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=296.62 Aligned_cols=516 Identities=16% Similarity=0.169 Sum_probs=389.4
Q ss_pred cEEEeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCC--------cEEEEEcccCeEEE
Q 038577 17 NAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQ--------RCHFINLHCHVVLH 88 (860)
Q Consensus 17 ~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~--------~i~vwd~~~~~~~~ 88 (860)
++-+--.+.++|...+.+.+||.+...++... ||+..|.|++++||.-++|+|...| .+++||..+-..++
T Consensus 70 Nly~lptgE~vyfvA~V~Vl~n~ee~~Qr~y~-GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~ 148 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVAAVGVLYNWEERSQRHYL-GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH 148 (626)
T ss_pred eeEEccCccEEEEeccEEEEEeehhhhccccc-CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeee
Confidence 34444344577777788999999887777766 9999999999999999999764443 69999988888888
Q ss_pred Eee-cCCceeEEEECC--CCCEEEEE---eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC
Q 038577 89 RVR-FKYPVNAILFSP--NGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD 162 (860)
Q Consensus 89 ~~~-~~~~v~~~~fsp--dg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d 162 (860)
.+. ....|.|++||+ .|.+|++. .+..+.|||+..+.. ..........|....|.|.+.-|+.....
T Consensus 149 V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~-------~~~vk~sne~v~~a~FHPtd~nliit~Gk 221 (626)
T KOG2106|consen 149 VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAK-------LGPVKTSNEVVFLATFHPTDPNLIITCGK 221 (626)
T ss_pred eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhc-------cCcceeccceEEEEEeccCCCcEEEEeCC
Confidence 887 677899999998 45677766 556899999987764 33444556778899999977666666667
Q ss_pred CeEEEEeecccccCcccccceEeec-CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCC
Q 038577 163 LAVRLFYVKEKLKGIHTNKPFLLLG-HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPS 241 (860)
Q Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 241 (860)
+.+.+|+.+.+ ... +..-.+.+ .+..|.+++|.+++. ++++..+|.|.+|+..+...
T Consensus 222 ~H~~Fw~~~~~-~l~--k~~~~fek~ekk~Vl~v~F~engd------viTgDS~G~i~Iw~~~~~~~------------- 279 (626)
T KOG2106|consen 222 GHLYFWTLRGG-SLV--KRQGIFEKREKKFVLCVTFLENGD------VITGDSGGNILIWSKGTNRI------------- 279 (626)
T ss_pred ceEEEEEccCC-ceE--EEeeccccccceEEEEEEEcCCCC------EEeecCCceEEEEeCCCceE-------------
Confidence 89999998877 111 12222222 336799999999995 99999999999999865311
Q ss_pred CCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe--ecCceeEEEEEeeCCC
Q 038577 242 PGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS--ISREKITTAVFNELGN 319 (860)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~ 319 (860)
.+... .|.+.|.+++...+|.++- |+.|..|..|| .+.+.++... ...+.++.++-...+
T Consensus 280 --------------~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d- 341 (626)
T KOG2106|consen 280 --------------SKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD- 341 (626)
T ss_pred --------------EeEee-ecCCceEEEEEecCccEee-cCccceEEecc-ccccccccccCchhcCCeeEEecCCCc-
Confidence 23333 8899999999999998666 99999999999 4545444433 344566666554433
Q ss_pred EEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEE
Q 038577 320 WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF 399 (860)
Q Consensus 320 ~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 399 (860)
++++... +.|..=.++++-.+ ...+|......++.+|+..++++++.|+.+++|+ ..+...+.. -..+..++.|
T Consensus 342 -i~vGTtr-N~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~f 415 (626)
T KOG2106|consen 342 -ILVGTTR-NFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADF 415 (626)
T ss_pred -EEEeecc-ceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeec
Confidence 6666555 45554455544333 3468888999999999999999999999999999 444444332 4678899999
Q ss_pred eeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-eEEE-ecCcc
Q 038577 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-LLDI-LSGHE 477 (860)
Q Consensus 400 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~-~~~h~ 477 (860)
+|.| .++.|...|...+.|..+...+..-.. ..++.++.++|+|.++|+|+.|+ .|++|-+.... .... -+.|.
T Consensus 416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~-~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD--NEQLSVVRYSPDGAFLAVGSHDN-HIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cCcc-eEEEeeccceEEEEecccceeEEEEec--CCceEEEEEcCCCCEEEEecCCC-eEEEEEECCCCcEEEEeeeecC
Confidence 9999 999999999999999988555444443 67899999999999999999999 99999887543 3322 23455
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee----------------EE--cccCCCeEEEEEeeCCCEEEEEeC
Q 038577 478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV----------------ES--FPHTHDVLTVVYRPDGRQLACSTL 539 (860)
Q Consensus 478 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------~~--~~~~~~v~~~~~s~~~~~l~~~~~ 539 (860)
.+|+.+.||+|++++.+-+.|-.|..|....-+... .. ..+...+..++-+.+.+++|+|.+
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd 571 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD 571 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc
Confidence 899999999999999999999999999433221111 00 125556677777888899999999
Q ss_pred CCeEEEEeCCCCce---eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 540 DGQIHFWDPLNGEL---MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 540 dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
.|.|++|...-.++ .....+|. +.|++++|+-+...|++.+.|..|..|++
T Consensus 572 ~g~v~lf~yPc~s~rA~~he~~ghs--------------------~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 572 FGKVHLFSYPCSSPRAPSHEYGGHS--------------------SHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred CceEEEEccccCCCcccceeecccc--------------------ceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999998654433 23334443 46999999999999999889999999986
No 23
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.5e-39 Score=281.11 Aligned_cols=291 Identities=14% Similarity=0.238 Sum_probs=260.7
Q ss_pred CEEEEEcCCCcEEEEEcccCeEEEEeec-CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCC
Q 038577 65 TFLLTVDENQRCHFINLHCHVVLHRVRF-KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDK 143 (860)
Q Consensus 65 ~~la~~~~d~~i~vwd~~~~~~~~~~~~-~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~ 143 (860)
-+||+++.|.+|++|...+|.+.++++| .+.|+.+...||++.||++....|++||++++... ++.++.+|...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~-----Pv~t~e~h~kN 85 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPN-----PVATFEGHTKN 85 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCC-----ceeEEeccCCc
Confidence 4789999999999999999999999995 56899999999999999999999999999988743 57899999999
Q ss_pred eEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeee
Q 038577 144 VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGF 223 (860)
Q Consensus 144 v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~ 223 (860)
|+++.|..||+.+++|++||+++|||+... .......|..+|+++..+|+.. .|+++..+|.|++||+
T Consensus 86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~-------~~qR~~~~~spVn~vvlhpnQt-----eLis~dqsg~irvWDl 153 (311)
T KOG0315|consen 86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSL-------SCQRNYQHNSPVNTVVLHPNQT-----ELISGDQSGNIRVWDL 153 (311)
T ss_pred eEEEEEeecCeEEEecCCCceEEEEeccCc-------ccchhccCCCCcceEEecCCcc-----eEEeecCCCcEEEEEc
Confidence 999999999999999999999999999886 3444556779999999999998 9999999999999999
Q ss_pred cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc------e
Q 038577 224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF------V 297 (860)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~------~ 297 (860)
....+ .....+.....|.++...|||.+++.+...|..++|++... +
T Consensus 154 ~~~~c---------------------------~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 154 GENSC---------------------------THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred cCCcc---------------------------ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 88654 12233344568999999999999999999999999998653 4
Q ss_pred eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc-eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376 (860)
Q Consensus 298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 376 (860)
++..++.|...+..+.+|||+++|++++++ .+++||+.++. +....+.+|...+...+||.||.+|++|+.|+.+++|
T Consensus 207 P~~k~~ah~~~il~C~lSPd~k~lat~ssd-ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW 285 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRCLLSPDVKYLATCSSD-KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLW 285 (311)
T ss_pred EhhheecccceEEEEEECCCCcEEEeecCC-ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeec
Confidence 556788899999999999999999999887 99999999988 6666778999999999999999999999999999999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEe
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFM 400 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~ 400 (860)
++..++.++...+|..+..|++..
T Consensus 286 ~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 286 DLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccccCceeeecCCcccccEEEEee
Confidence 999999999999999988888764
No 24
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-39 Score=284.46 Aligned_cols=301 Identities=20% Similarity=0.341 Sum_probs=261.9
Q ss_pred eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-----CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-----SESYILKQQGHYFDVNCLAYSPDSQLLATGADDN 371 (860)
Q Consensus 297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 371 (860)
....+++.|.+.|+.++..+.+..++..++.|..+.+|++. .|..++.+.+|...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 34467888999999999999988888888888999999875 4567888899999999999999999999999999
Q ss_pred cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC--CCEE
Q 038577 372 KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS--GEVI 449 (860)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l 449 (860)
.+++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+.............+...+.++.|+|+ ..++
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999986655444444433778999999998 7889
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee
Q 038577 450 CAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP 529 (860)
Q Consensus 450 ~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 529 (860)
+.++.|+ ++++||+++.+....+.+|.+.++.+++||||..+++|+.||.+.+||++.++. ....++...|.+++|+|
T Consensus 166 vs~s~Dk-tvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-lysl~a~~~v~sl~fsp 243 (315)
T KOG0279|consen 166 VSASWDK-TVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-LYSLEAFDIVNSLCFSP 243 (315)
T ss_pred EEccCCc-eEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-eEeccCCCeEeeEEecC
Confidence 9999999 999999999999999999999999999999999999999999999999999985 66678999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 530 DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 530 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
+...|+.+.. ..|+|||+.++..+..++...... ......-...+++||+||..|++|-.|+.|++|.
T Consensus 244 nrywL~~at~-~sIkIwdl~~~~~v~~l~~d~~g~-----------s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 244 NRYWLCAATA-TSIKIWDLESKAVVEELKLDGIGP-----------SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred CceeEeeccC-CceEEEeccchhhhhhcccccccc-----------ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9877777764 459999999999888776543211 0001112367899999999999999999999998
Q ss_pred CC
Q 038577 610 VA 611 (860)
Q Consensus 610 ~~ 611 (860)
+.
T Consensus 312 v~ 313 (315)
T KOG0279|consen 312 VA 313 (315)
T ss_pred ee
Confidence 75
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.7e-38 Score=289.63 Aligned_cols=331 Identities=17% Similarity=0.279 Sum_probs=303.2
Q ss_pred eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW 336 (860)
Q Consensus 257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~ 336 (860)
...|..|...+.+++.+|+.+++++|+.|..-.+|++.++.....+.+|.+.|+++.|+.+|.+|+++.-+ |.|+||..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms-G~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS-GKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC-ccEEEEEc
Confidence 46678899999999999999999999999999999999999999999999999999999999999999877 99999999
Q ss_pred cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577 337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416 (860)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 416 (860)
.++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 99998888876667788999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--------CcccCeEEEEEcC-
Q 038577 417 AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--------GHEGPVHGLVFSP- 487 (860)
Q Consensus 417 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--------~h~~~v~~l~~s~- 487 (860)
+|++.++.++..+.........++.++..+..+..|..++ .+++.+..+|+.+.... .+...+.++.+.|
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~-~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEG-VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCc-cEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 9999999999988877777788999999999999999988 89999999999887776 3444555555544
Q ss_pred --CCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCC
Q 038577 488 --TNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG 565 (860)
Q Consensus 488 --~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 565 (860)
.-++.|+|+-||+|.|||+...+ ++....|..+|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.+|..
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~-~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~--- 369 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAAST-LRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM--- 369 (399)
T ss_pred ccccchhhcccccceEEEEecccch-hheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch---
Confidence 55778999999999999998876 677778999999999998 78999999999999999999999999999987
Q ss_pred CccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 566 GRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
+|.+++++|+++++++++.|++.+||+++
T Consensus 370 -----------------~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 370 -----------------GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -----------------heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 59999999999999999999999999875
No 26
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-38 Score=277.39 Aligned_cols=296 Identities=26% Similarity=0.437 Sum_probs=252.0
Q ss_pred EEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECC-----CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc
Q 038577 341 YILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVS-----SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT 414 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~ 414 (860)
....+.+|.+.|+.++..+. ...+++++.|.++.+|++. .|..++.+.+|+..|..+..++||++.++++.|+.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 34567899999999999887 5688899999999999875 46788999999999999999999999999999999
Q ss_pred EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-cccCeEEEEEcCC--CCE
Q 038577 415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-HEGPVHGLVFSPT--NAT 491 (860)
Q Consensus 415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~s~~--~~~ 491 (860)
+++||+.+++..+.+..+. ..+.++++++|.+.+++|+.|. +|.+|++........... |.+.|+|+.|+|+ ..+
T Consensus 87 lrlWDl~~g~~t~~f~GH~-~dVlsva~s~dn~qivSGSrDk-Tiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHT-KDVLSVAFSTDNRQIVSGSRDK-TIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred EEEEEecCCcEEEEEEecC-CceEEEEecCCCceeecCCCcc-eeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 9999999998888877654 4899999999999999999999 999999885544443333 3789999999998 789
Q ss_pred EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577 492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD 571 (860)
Q Consensus 492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 571 (860)
+++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.||.+.+||++.++.++.+.+...
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~--------- 235 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDI--------- 235 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCe---------
Confidence 99999999999999999988888889999999999999999999999999999999999999998887664
Q ss_pred cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCC
Q 038577 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDD 651 (860)
Q Consensus 572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (860)
|.+++|+|+.-+|+.+...+ |+|||++++..+..+.... .|
T Consensus 236 ------------v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v~~l~~d~------------------~g-------- 276 (315)
T KOG0279|consen 236 ------------VNSLCFSPNRYWLCAATATS-IKIWDLESKAVVEELKLDG------------------IG-------- 276 (315)
T ss_pred ------------EeeEEecCCceeEeeccCCc-eEEEeccchhhhhhccccc------------------cc--------
Confidence 99999999988887765544 9999999998886554211 00
Q ss_pred CCCccccccccccCccccCCCCCCCCCCCC-ccceeEEEECCCCCeEEEeccccEE-EEecC
Q 038577 652 NSDTEEGVEKQTRGKLDYDLPGALPNRGRP-TIQTKCLKIAPTGRNFVAATTEGVL-VYSID 711 (860)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~ 711 (860)
. ..+- .....++++++||.+++.+-.++++ +|.+.
T Consensus 277 ----------------------~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 277 ----------------------P---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ----------------------c---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 0 0000 1145789999999999999999965 88753
No 27
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=2.5e-35 Score=281.92 Aligned_cols=538 Identities=15% Similarity=0.196 Sum_probs=401.7
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eC--------CeEEEEeCCCCCc
Q 038577 56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TG--------KLVQIWRSPGFKK 126 (860)
Q Consensus 56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~--------~~i~iwd~~~~~~ 126 (860)
..+-+-|.|..+.... +.+.+++++...+.....|...|.|++.+||...+|+| .. ..+++||..+...
T Consensus 69 ~Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~T 146 (626)
T KOG2106|consen 69 NNLYLLPTGELVYFVA--AVGVLYNWEERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLST 146 (626)
T ss_pred ceeEEccCccEEEEec--cEEEEEeehhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeeccccccee
Confidence 3456778888776554 46778888887777777899999999999999999988 11 3799999776552
Q ss_pred ccceeEEEEEeeccCCCeEEEEEcC--CCCeEEEe--ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577 127 EVFAFELIRTLADCNDKVTALNWSP--DSNYLLVG--SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK 202 (860)
Q Consensus 127 ~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~l~s~--~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 202 (860)
+..+......|+|++||+ .|.+|... +.+..+.|||...+ .........+..+..+.|.|.+.
T Consensus 147 -------L~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~------~~~~~vk~sne~v~~a~FHPtd~ 213 (626)
T KOG2106|consen 147 -------LHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKK------AKLGPVKTSNEVVFLATFHPTDP 213 (626)
T ss_pred -------eeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhh------hccCcceeccceEEEEEeccCCC
Confidence 455666677899999998 34555554 45567899999887 44555666778889999999988
Q ss_pred CCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc-CCCCceEEEEecCCCCEEEE
Q 038577 203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS-QAPSKVTACDYHRGLDMVVV 281 (860)
Q Consensus 203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 281 (860)
.++.....+.+.+|+.+++.... +...+. .....|.|++|.++|+ +++
T Consensus 214 -----nliit~Gk~H~~Fw~~~~~~l~k-------------------------~~~~fek~ekk~Vl~v~F~engd-viT 262 (626)
T KOG2106|consen 214 -----NLIITCGKGHLYFWTLRGGSLVK-------------------------RQGIFEKREKKFVLCVTFLENGD-VIT 262 (626)
T ss_pred -----cEEEEeCCceEEEEEccCCceEE-------------------------EeeccccccceEEEEEEEcCCCC-EEe
Confidence 56666668899999988754310 111111 1225799999999997 789
Q ss_pred EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE--EecCcccCeEEEEEcC
Q 038577 282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL--KQQGHYFDVNCLAYSP 359 (860)
Q Consensus 282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~--~~~~~~~~v~~~~~s~ 359 (860)
|..+|.|.+|+..+.+..+....|.+.|.+++.-.+|..+- +..|..|..|| ..-+.+. +++...++|+.++-..
T Consensus 263 gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS--GgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~ 339 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS--GGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGK 339 (626)
T ss_pred ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee--cCccceEEecc-ccccccccccCchhcCCeeEEecCC
Confidence 99999999999988888887779999999999999998776 55669999999 3222222 2345567788776543
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEE
Q 038577 360 DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS 439 (860)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 439 (860)
.+ |++|...+.|..=.++++..+..+ +|....+.++.+|+...+++++.|+.+++|+ ..+....... ..+..+
T Consensus 340 ~d--i~vGTtrN~iL~Gt~~~~f~~~v~-gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~--~d~~~~ 412 (626)
T KOG2106|consen 340 GD--ILVGTTRNFILQGTLENGFTLTVQ-GHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII--EDPAEC 412 (626)
T ss_pred Cc--EEEeeccceEEEeeecCCceEEEE-ecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe--cCceeE
Confidence 33 778888788887777777665544 7999999999999999999999999999999 4444443333 336789
Q ss_pred EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--c
Q 038577 440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--P 517 (860)
Q Consensus 440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~ 517 (860)
+.|+|.| .+++|...| ...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|++|.+.......... -
T Consensus 413 ~~fhpsg-~va~Gt~~G-~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~ 489 (626)
T KOG2106|consen 413 ADFHPSG-VVAVGTATG-RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC 489 (626)
T ss_pred eeccCcc-eEEEeeccc-eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence 9999999 999999988 999999999766665554 8899999999999999999999999999997765444433 2
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597 (860)
Q Consensus 518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 597 (860)
+..+|+.+.||+|+++|.+-+.|-.|..|.....+.....+.-.-.......... .....++..|..++-+.+.++++
T Consensus 490 ~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~--v~g~s~~t~i~a~~rs~~~~~lA 567 (626)
T KOG2106|consen 490 SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFE--VFGGSDGTDINAVARSHCEKLLA 567 (626)
T ss_pred cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEE--EecccCCchHHHhhhhhhhhhhh
Confidence 4589999999999999999999999999965554444432221111000111111 11245566788889999999999
Q ss_pred EecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCCC
Q 038577 598 AGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALPN 677 (860)
Q Consensus 598 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 677 (860)
+|.+.|.|++|..+--+....+ .+
T Consensus 568 ~gdd~g~v~lf~yPc~s~rA~~--------------------------------------------------------he 591 (626)
T KOG2106|consen 568 SGDDFGKVHLFSYPCSSPRAPS--------------------------------------------------------HE 591 (626)
T ss_pred ccccCceEEEEccccCCCcccc--------------------------------------------------------ee
Confidence 9999999999986533211100 01
Q ss_pred CCCCccceeEEEECCCCCeEEEecccc-EEEEec
Q 038577 678 RGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSI 710 (860)
Q Consensus 678 ~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~ 710 (860)
-..+...+++++|.-+..+|++.+.|. +..|.+
T Consensus 592 ~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 592 YGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 223455799999999988888777766 557875
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-37 Score=295.03 Aligned_cols=324 Identities=23% Similarity=0.426 Sum_probs=292.0
Q ss_pred CCCCceEEEEecCCCC-EEEEEEcCCeEEEEECCCce----eEEEE----------eecCceeEEEEEeeCCCEEEEEEc
Q 038577 262 QAPSKVTACDYHRGLD-MVVVGFSNGVFGLYQMPDFV----CIHLL----------SISREKITTAVFNELGNWLVFGCA 326 (860)
Q Consensus 262 ~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~~~~~~~----~~~~~----------~~~~~~i~~~~~s~~~~~l~~~~~ 326 (860)
.|..+|.+++|+|-.. .+++|+.+-..++|++.... ....+ ......|++++|+.+|..|+++..
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 3888999999999887 88999999999999987411 10011 112357999999999999999987
Q ss_pred cCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEE
Q 038577 327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSL 406 (860)
Q Consensus 327 ~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 406 (860)
+ |.+++|+. ++..+..+..|.++|.++.|+.+|.+|++++.|+++.+||..++...+.+.-|..+-.++.|-.+ ..+
T Consensus 256 ~-G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F 332 (524)
T KOG0273|consen 256 D-GEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEF 332 (524)
T ss_pred C-cEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceE
Confidence 7 99999996 45666777889999999999999999999999999999999999999999999998788899654 479
Q ss_pred EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577 407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS 486 (860)
Q Consensus 407 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s 486 (860)
++++.|+.|+++.+...++..++.. +...|.++.|+|.|.+|++++.|+ ++++|++........+.+|...|..+.|+
T Consensus 333 ~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~-TlkiWs~~~~~~~~~l~~Hskei~t~~ws 410 (524)
T KOG0273|consen 333 ATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDG-TLKIWSMGQSNSVHDLQAHSKEIYTIKWS 410 (524)
T ss_pred eecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCC-eeEeeecCCCcchhhhhhhccceeeEeec
Confidence 9999999999999999999999988 667999999999999999999999 99999999999999999999999999999
Q ss_pred CCC---------CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 038577 487 PTN---------ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557 (860)
Q Consensus 487 ~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 557 (860)
|+| ..+++++.|++|++||+..+.++..+..|..+|.+++|||+|+++|+|+.||.|++|+.++++..+..
T Consensus 411 p~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 411 PTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred CCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 975 36999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 558 EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
.+... |..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 491 ~~~~~---------------------Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 QGTGG---------------------IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCe---------------------EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 87664 8999999999999999999999998874
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-37 Score=294.39 Aligned_cols=322 Identities=19% Similarity=0.268 Sum_probs=286.5
Q ss_pred CCccCeeEEEEcCCCC-EEEEEcCCCcEEEEEcccC----eEEEEee-----------cCCceeEEEECCCCCEEEEE-e
Q 038577 50 ESSSNICRIAVSPDGT-FLLTVDENQRCHFINLHCH----VVLHRVR-----------FKYPVNAILFSPNGKYIAVG-T 112 (860)
Q Consensus 50 ~h~~~v~~va~spdg~-~la~~~~d~~i~vwd~~~~----~~~~~~~-----------~~~~v~~~~fspdg~~la~~-~ 112 (860)
+|..+|.+.+|+|-.. .+|+++.+-..++|++... .....++ ....|++++|+.+|.+||+| .
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4999999999999776 8999999999999998751 1111111 34679999999999999999 8
Q ss_pred CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE
Q 038577 113 GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV 192 (860)
Q Consensus 113 ~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i 192 (860)
+|.++||+..+.. +.++..|+++|.++.|+.+|.||++++.|+++.+||..++ .....+.-|..+-
T Consensus 256 ~G~~riw~~~G~l--------~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g------~~~q~f~~~s~~~ 321 (524)
T KOG0273|consen 256 DGEARIWNKDGNL--------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG------TVKQQFEFHSAPA 321 (524)
T ss_pred CcEEEEEecCchh--------hhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc------eEEEeeeeccCCc
Confidence 9999999998874 6788999999999999999999999999999999999988 6678888898887
Q ss_pred EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577 193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY 272 (860)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 272 (860)
..+.|-.+. .+++++.|+.|+++.+....+ ...+.+|.+.|.++.|
T Consensus 322 lDVdW~~~~------~F~ts~td~~i~V~kv~~~~P----------------------------~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 322 LDVDWQSND------EFATSSTDGCIHVCKVGEDRP----------------------------VKTFIGHHGEVNALKW 367 (524)
T ss_pred cceEEecCc------eEeecCCCceEEEEEecCCCc----------------------------ceeeecccCceEEEEE
Confidence 888887776 599999999999999887543 4556779999999999
Q ss_pred cCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCC---------CEEEEEEccCCcEEEEEccCceEEE
Q 038577 273 HRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG---------NWLVFGCAKLGQLLVWEWRSESYIL 343 (860)
Q Consensus 273 ~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---------~~l~~~~~~~g~i~v~d~~~~~~~~ 343 (860)
.|.+.+|++++.|+++++|+.........++.|...|..+.|+|+| ..++.++. +++|++||+..+.++.
T Consensus 368 n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~-dstV~lwdv~~gv~i~ 446 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF-DSTVKLWDVESGVPIH 446 (524)
T ss_pred CCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec-CCeEEEEEccCCceeE
Confidence 9999999999999999999999999999999999999999999976 34455544 5999999999999999
Q ss_pred EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577 344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF 421 (860)
Q Consensus 344 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 421 (860)
.+..|..+|.+++|+|+|+++|+|+.||.|.+|+.++++..+.+.+ .+.|..++|+.+|.++..+-.|+.+++.|++
T Consensus 447 ~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 447 TLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999999999999999999999999999999999998864 5669999999999999999999999999875
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.4e-37 Score=281.50 Aligned_cols=330 Identities=19% Similarity=0.264 Sum_probs=292.9
Q ss_pred EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA 213 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~ 213 (860)
+..+..|++.|.+++.+|+.+++++|+.|..-.+|++.++ .....+.+|++.|+++.|+.++. +|++++
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g------e~~~eltgHKDSVt~~~Fshdgt-----lLATGd 125 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG------EFAGELTGHKDSVTCCSFSHDGT-----LLATGD 125 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCC------cceeEecCCCCceEEEEEccCce-----EEEecC
Confidence 5778899999999999999999999999999999999999 67899999999999999999999 999999
Q ss_pred CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEEC
Q 038577 214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM 293 (860)
Q Consensus 214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~ 293 (860)
.+|.|++|+..++.. .|.+. .....+.-+.|+|.+..|++|+.||.+.+|.+
T Consensus 126 msG~v~v~~~stg~~----------------------~~~~~------~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGE----------------------QWKLD------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred CCccEEEEEcccCce----------------------EEEee------cccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 999999999998754 44332 44567899999999999999999999999999
Q ss_pred CCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-cccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-HYFDVNCLAYSPDSQLLATGADDNK 372 (860)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~ 372 (860)
++....+.+.+|..++++-.|.|+|+.++++..+ |+|++|+..++.++..... ......++.++..+..++.|..++.
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d-gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD-GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecC-ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 9998999999999999999999999999999875 9999999999999888753 3456788999999999999999999
Q ss_pred EEEEECCCCeeEEEee--------cCCCceEEEEEee---CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEE
Q 038577 373 VKVWTVSSGFCFVTFT--------EHTNAVTALHFMA---NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA 441 (860)
Q Consensus 373 i~iwd~~~~~~~~~~~--------~~~~~v~~i~~~~---~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 441 (860)
+++-+..+|+.+.... .+...+.++.+.| .-...++|+.||+|.+||+...+....... ...|..+.
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~h--e~~V~~l~ 334 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEH--EDGVTKLK 334 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccC--CCceEEEE
Confidence 9999999998888776 3444555555544 446788999999999999988776555544 34689999
Q ss_pred ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577 442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507 (860)
Q Consensus 442 ~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 507 (860)
|.+ ..+|++++.++ .|+.||.++|++...+.||...|.+++++|+.++++|+|.|++.+||++.
T Consensus 335 w~~-t~~l~t~c~~g-~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANG-KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCc-eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999 88999999999 99999999999999999999999999999999999999999999999864
No 31
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=6.9e-36 Score=297.10 Aligned_cols=559 Identities=17% Similarity=0.239 Sum_probs=398.2
Q ss_pred cccccccCCcEEEe-CCC---EEEee-eCCeEEEEECCCCcE--EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEE
Q 038577 8 LLGAPYRGGNAVLS-QNT---KLISP-VGNRVSVTDLIKSKT--VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFIN 80 (860)
Q Consensus 8 ~~g~~~~~~~~~~s-dg~---~l~~~-~~~~i~v~d~~~~~~--~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd 80 (860)
+-|+.-+...+.+- +.+ ++++| +|+.|.+|.++.... ...+.+|. +.+++++...........|+.+.+||
T Consensus 50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~ 127 (764)
T KOG1063|consen 50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECVCVVARSSVMTCKAADGTVSVWD 127 (764)
T ss_pred ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEEEEEeeeeEEEeeccCceEEEee
Confidence 34444444455555 555 45555 678999999984443 23333444 45555554444444446789999999
Q ss_pred cccCe--EEEEeec---CCceeEEEECCCC-CEE-EEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC
Q 038577 81 LHCHV--VLHRVRF---KYPVNAILFSPNG-KYI-AVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD 152 (860)
Q Consensus 81 ~~~~~--~~~~~~~---~~~v~~~~fspdg-~~l-a~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 152 (860)
.+..+ ++..+.. ..--.|+++.|+. .++ |.| .+..|.++.-... .+.....+.||.+.|.+++|..-
T Consensus 128 ~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d-----~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 128 KQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSAD-----SFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred cCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCc-----ceeEEEEeeccchhhhhhhhhcc
Confidence 96555 3333331 1223567777744 333 333 4445555544422 56678999999999999999875
Q ss_pred C---CeEEEeecCCeEEEEeecccc-cC-------------ccc-cc----------ceEeecCCCcEEEEEEccCCCCC
Q 038577 153 S---NYLLVGSKDLAVRLFYVKEKL-KG-------------IHT-NK----------PFLLLGHRDSVVGCFFSVDKKTD 204 (860)
Q Consensus 153 ~---~~l~s~~~dg~v~vwd~~~~~-~~-------------~~~-~~----------~~~~~~h~~~i~~~~~~~~~~~~ 204 (860)
+ -+||+++.|..||+|.+.... +. ... .. ...+.||.+.|.++.|+|.+.
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~-- 280 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL-- 280 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh--
Confidence 5 489999999999999986552 00 000 00 023459999999999999998
Q ss_pred ccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec-cccCCCCceEEEEecCCCCEEEEEE
Q 038577 205 KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD-DFSQAPSKVTACDYHRGLDMVVVGF 283 (860)
Q Consensus 205 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~ 283 (860)
.|++++.|.++.+|...... +.|....+. ...+.........|+|+++.+++-+
T Consensus 281 ---~LLSASaDksmiiW~pd~~t----------------------GiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g 335 (764)
T KOG1063|consen 281 ---DLLSASADKSMIIWKPDENT----------------------GIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHG 335 (764)
T ss_pred ---hheecccCcceEEEecCCcc----------------------ceEEEEEEeecccccccceeeEEEcCCCCEEEEec
Confidence 89999999999999887643 367655432 2334455688999999999999999
Q ss_pred cCCeEEEEECCC---ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc----eEEEEecCcccCeEEEE
Q 038577 284 SNGVFGLYQMPD---FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE----SYILKQQGHYFDVNCLA 356 (860)
Q Consensus 284 ~~g~i~~~~~~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~~~~~v~~~~ 356 (860)
..|..++|...+ ......+.+|.+.|+.++|.|.|+++++++.+ .+-+++-.-.. ..+.+.+-|...++|++
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~D-QTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~ 414 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLD-QTTRLFARWGRQQEWHEIARPQIHGYDLTCLS 414 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccc-cceeeecccccccceeeecccccccccceeee
Confidence 999999999433 23445677899999999999999999999877 77777654311 23344466888899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCC----------C---------------------------------ee----------
Q 038577 357 YSPDSQLLATGADDNKVKVWTVSS----------G---------------------------------FC---------- 383 (860)
Q Consensus 357 ~s~~~~~l~~~~~dg~i~iwd~~~----------~---------------------------------~~---------- 383 (860)
+-+....+++|.....+|+|+... + ..
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 998777889999889999997531 0 00
Q ss_pred -----------------------EEEeecCCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCC
Q 038577 384 -----------------------FVTFTEHTNAVTALHFMANNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSR 435 (860)
Q Consensus 384 -----------------------~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~ 435 (860)
+..+.+|...|.+++.+|+++.+++++... .|++|+..+......+.. +.-
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-HsL 573 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-HSL 573 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-cce
Confidence 011234889999999999999999988654 589999988877775554 445
Q ss_pred cEEEEEECCCCCEEEEEecCCCeEEEEECCCCce----EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC--
Q 038577 436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL----LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG-- 509 (860)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-- 509 (860)
.++.++|||||++|++.+.|. ++.+|....... ....+.|..-|.+..|+|++.+++|+|.|++|++|.....
T Consensus 574 TVT~l~FSpdg~~LLsvsRDR-t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d 652 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDR-TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD 652 (764)
T ss_pred EEEEEEECCCCcEEEEeecCc-eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh
Confidence 899999999999999999999 999999764322 2346789999999999999999999999999999998877
Q ss_pred ccee--EEcccCCCeEEEEEee-----CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCC
Q 038577 510 KGSV--ESFPHTHDVLTVVYRP-----DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGK 582 (860)
Q Consensus 510 ~~~~--~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (860)
+.+. ....+...|+++++.| .+..+++|-..|.|.+|....-....+.-.+. ..........+..
T Consensus 653 ~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~ 724 (764)
T KOG1063|consen 653 KYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFN--------LDTRLCATIGPDS 724 (764)
T ss_pred hhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeee--------eccccccccChHH
Confidence 3332 3446889999999988 23378999999999999865221111111000 0011112223345
Q ss_pred cEEEEEEecC----------CCEEEEecCCCeEEEEECC
Q 038577 583 CFTTLCYSAD----------GSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 583 ~i~~l~~s~~----------g~~l~~~~~dg~v~vwd~~ 611 (860)
.|+.++|+|. ...|+++++|..++++++.
T Consensus 725 aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 725 AVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred hhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 6899999975 2356999999999999874
No 32
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.5e-35 Score=280.18 Aligned_cols=467 Identities=17% Similarity=0.237 Sum_probs=357.2
Q ss_pred eeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC
Q 038577 249 VKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL 328 (860)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~ 328 (860)
.+.|+-............|.+++|+|...+=++.+..-.+.+|+..+......+......+.++.|..||+.++++...
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~s- 89 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDES- 89 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCc-
Confidence 3566666666666677899999999988776666667789999998888888888888899999999999999888766
Q ss_pred CcEEEEEccCceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC-CEE
Q 038577 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN-HSL 406 (860)
Q Consensus 329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l 406 (860)
|.|+++|..+...+..+.+|..++..+.|+|++ ..+++|+.|+.+++||+.+......+.+|++.|.+.+|+|.. ..+
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE
Confidence 999999988877788889999999999999965 567788889999999999998877999999999999999965 578
Q ss_pred EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577 407 LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS 486 (860)
Q Consensus 407 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s 486 (860)
++||.||.|++||++... ..+..+. |..+|..+.+-
T Consensus 170 vtGsYDg~vrl~DtR~~~-------------------------------------------~~v~eln-hg~pVe~vl~l 205 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLT-------------------------------------------SRVVELN-HGCPVESVLAL 205 (487)
T ss_pred EecCCCceEEEEEeccCC-------------------------------------------ceeEEec-CCCceeeEEEc
Confidence 899999999999975421 1222333 88899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCC
Q 038577 487 PTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISG 565 (860)
Q Consensus 487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 565 (860)
|.|..+|+++ ...|++||+.++....... .|...|+|+++..++..|++++-|+.+++||+.+.+.+..+.-..
T Consensus 206 psgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---- 280 (487)
T KOG0310|consen 206 PSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---- 280 (487)
T ss_pred CCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc----
Confidence 9999999987 4579999999665554444 499999999999999999999999999999999999999888765
Q ss_pred CccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCC
Q 038577 566 GRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPM 645 (860)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (860)
+|.+++.+||++.++.|..+|.+.+=+...++.-...+.
T Consensus 281 -----------------pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~s~~~~------------------------ 319 (487)
T KOG0310|consen 281 -----------------PVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKPSKEPK------------------------ 319 (487)
T ss_pred -----------------ceeeEEecCCCceEEEecccceeeeehhhcccCCCcccc------------------------
Confidence 499999999999999999999876653322211100000
Q ss_pred ccccCCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEecC-CccccCCcccCcc
Q 038577 646 DLIDDDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYSID-ESFIFDPTDLDID 724 (860)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~~~-~~~~~~~~~~~~~ 724 (860)
. +..+ +..++...... .+..+ +....++.. .
T Consensus 320 ---------------------~---------r~~r-------------~~~~~v~~r~~--~~~~~~ddiv~n~~~---r 351 (487)
T KOG0310|consen 320 ---------------------R---------RADR-------------SDGFFVKVRGQ--NYKGQKDDIVVNEVK---R 351 (487)
T ss_pred ---------------------c---------cccc-------------cccceEeeecc--ccccccceeEecccc---c
Confidence 0 0000 00000000000 00000 000000000 0
Q ss_pred CCHHHHHhhcCcCCcHHHHHHHHh-cCChHHHHHHhHhcCC-CccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHHH
Q 038577 725 VTPEAVDAALNEDQPKRALILSLR-LNEDNLIKKCIFAISP-VDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRW 802 (860)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~-~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~ 802 (860)
.......+.++.-.+.++|...++ ..+.+++..+|+.+-. -.+..++.-....++..||.||.+.+...+.+++++.|
T Consensus 352 ~~L~~~Dk~Lk~F~~kkALd~vl~~~~~pelvvavl~eL~~Rg~l~~AL~grde~eL~~lLnfl~~~l~~~rf~~~L~~~ 431 (487)
T KOG0310|consen 352 LKLTYFDKRLKQFKHKKALDHVLEPKKDPELVVAVLSELVHRGGLRRALAGRDESELAPLLNFLVKNLTVVRFASILMEV 431 (487)
T ss_pred cCCchHHHHHhhhhHHHHHHHHhcccCChhHHHHHHHHHHHhhHHHHHhcCccHHHHHHHHHHHHhhccchhhHHHHHHH
Confidence 112233445566688889999998 7888999999888775 67788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhhc
Q 038577 803 CQELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCSV 856 (860)
Q Consensus 803 l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 856 (860)
...+|-+.+..|...+ .+.+.+..|+..+++.... ++.+.+...+|+-|-++
T Consensus 432 ~~~iLd~Y~~~i~~s~-~l~k~i~~L~~~V~~Ev~~-q~ellr~~G~ldmL~~~ 483 (487)
T KOG0310|consen 432 VSVILDLYARDIEGSP-MLAKLIQALRGKVEQEVRV-QKELLRLIGMLDMLGSI 483 (487)
T ss_pred HHHHHHHHHhhhccCH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHh
Confidence 9999999999998876 8888999999999888544 44444555666655443
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-34 Score=293.98 Aligned_cols=498 Identities=15% Similarity=0.189 Sum_probs=363.3
Q ss_pred CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcc
Q 038577 50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKE 127 (860)
Q Consensus 50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~ 127 (860)
..+..|..++|+|...++.++-.+|.|.+||..-+.++.++. |.++|+.++|+|++.++++| .|..|+||+..+.+
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr-- 84 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR-- 84 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce--
Confidence 355779999999999999999999999999999999999998 99999999999999999999 67899999999887
Q ss_pred cceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccc
Q 038577 128 VFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN 207 (860)
Q Consensus 128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~ 207 (860)
++.++.||-+.|..+.|++.-.+++++|.|.+|+||+..++ .+...+.||...|.|..|+|...
T Consensus 85 -----clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptED----- 148 (1202)
T KOG0292|consen 85 -----CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTED----- 148 (1202)
T ss_pred -----ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC------ceEEEEecCceEEEeeccCCccc-----
Confidence 68899999999999999999999999999999999999999 78999999999999999999888
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCC-cceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTP-ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG 286 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g 286 (860)
.++++|-|.+|++||+.+-..+.......++....... ..-.+.-+..-+..+.+|...|..++|+|.-..+++|+.|.
T Consensus 149 lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR 228 (1202)
T KOG0292|consen 149 LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR 228 (1202)
T ss_pred eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcc
Confidence 99999999999999998754322221111111111101 01112224455778899999999999999999999999999
Q ss_pred eEEEEECCCce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE
Q 038577 287 VFGLYQMPDFV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL 364 (860)
Q Consensus 287 ~i~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 364 (860)
.|++|.+...+ .+.+.++|.+.|.++-|+|..+.+++.+.+ +.|+|||+...+.+..++......++++.+|..+.+
T Consensus 229 qVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsED-ksirVwDm~kRt~v~tfrrendRFW~laahP~lNLf 307 (1202)
T KOG0292|consen 229 QVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSED-KSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLF 307 (1202)
T ss_pred eeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCC-ccEEEEecccccceeeeeccCCeEEEEEecCCccee
Confidence 99999986544 356678899999999999988888777665 999999999999999998778889999999999988
Q ss_pred EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC----CcEEEE
Q 038577 365 ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS----RQFVSL 440 (860)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----~~~~~~ 440 (860)
+.|.. +-+.+|.++... +..+ .+ ++.|.-.- |..|+.+|+.+.+.......... .++.++
T Consensus 308 AAgHD-sGm~VFkleREr----------pa~~--v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sm 371 (1202)
T KOG0292|consen 308 AAGHD-SGMIVFKLERER----------PAYA--VN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSL 371 (1202)
T ss_pred eeecC-CceEEEEEcccC----------ceEE--Ec--CCEEEEEc-cceEEeeeccccccceeEeccCCCcccCCccee
Confidence 87654 556677665322 2222 22 22333333 88999999988665554443332 467889
Q ss_pred EECCCCCEEEEE-ecCCCeEEEEECCCCceE----EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE
Q 038577 441 ASDQSGEVICAG-TLDSFEIFVWSMKTGRLL----DILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515 (860)
Q Consensus 441 ~~~~~~~~l~~~-~~~~~~i~v~d~~~~~~~----~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 515 (860)
.++|....+..+ ..+++.-.++.+...... .... .......+ |-..+++.+.--.+..+.+-++.+.. . ..
T Consensus 372 sYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~v-t-kk 447 (1202)
T KOG0292|consen 372 SYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKV-T-KK 447 (1202)
T ss_pred eeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhh-cCCCCceE-EEEecceEEEEecCcceEEecccchh-h-hc
Confidence 999987766555 334445555554422110 0000 01111112 22222222222224445555543322 1 11
Q ss_pred cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCE
Q 038577 516 FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSY 595 (860)
Q Consensus 516 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 595 (860)
......+..+.+.-.|.+|+.. ...|.+||+...+.+..++... +..++||+|..+
T Consensus 448 l~~~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~s~----------------------vkyvvws~dm~~ 503 (1202)
T KOG0292|consen 448 LLLPESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKVSK----------------------VKYVVWSNDMSR 503 (1202)
T ss_pred ccCcccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEecCc----------------------eeEEEEcCccch
Confidence 1222345566666677665554 4469999999998888887654 789999999988
Q ss_pred EEEecCCCeEEEEECC
Q 038577 596 ILAGGSSKYICMYDVA 611 (860)
Q Consensus 596 l~~~~~dg~v~vwd~~ 611 (860)
++--+. .+|.|.+..
T Consensus 504 vAll~K-h~i~i~~kk 518 (1202)
T KOG0292|consen 504 VALLSK-HTITIADKK 518 (1202)
T ss_pred hhhccc-ceEEEEecc
Confidence 776543 456666643
No 34
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-34 Score=280.02 Aligned_cols=458 Identities=11% Similarity=0.127 Sum_probs=346.9
Q ss_pred ccCCcEEEe-CCCEEEee-eCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe
Q 038577 13 YRGGNAVLS-QNTKLISP-VGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV 90 (860)
Q Consensus 13 ~~~~~~~~s-dg~~l~~~-~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~ 90 (860)
-+..++.|. -.-+++++ -.|.|.|||.++...+..+.-..-+|.+..|-+..+++++|+.|.+|+|++..+++.+..+
T Consensus 14 dRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 14 DRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred CceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 345567777 66666665 5789999999999998888777889999999999999999999999999999999999999
Q ss_pred e-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC-CCCeEEEeecCCeEEE
Q 038577 91 R-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP-DSNYLLVGSKDLAVRL 167 (860)
Q Consensus 91 ~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~v 167 (860)
. |..-|++++.+|...++.++ .|-.|++||++.+- .+.+++.||...|.+++|.| |.+.+|+++-|++|+|
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW------ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCce------eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence 8 99999999999999999999 66799999998753 47899999999999999999 5589999999999999
Q ss_pred EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577 168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER 247 (860)
Q Consensus 168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (860)
|.+... ....++.+|...|+++.|-+.|. ..+|+++++|.++++||..+..+
T Consensus 168 Wslgs~------~~nfTl~gHekGVN~Vdyy~~gd---kpylIsgaDD~tiKvWDyQtk~C------------------- 219 (794)
T KOG0276|consen 168 WSLGSP------HPNFTLEGHEKGVNCVDYYTGGD---KPYLISGADDLTIKVWDYQTKSC------------------- 219 (794)
T ss_pred EEcCCC------CCceeeeccccCcceEEeccCCC---cceEEecCCCceEEEeecchHHH-------------------
Confidence 999988 77899999999999999987663 23999999999999999998654
Q ss_pred eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577 248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK 327 (860)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 327 (860)
...+.+|...|.++.|+|.-..+++|+.||++++|+..+.+...++...-+++.+++-.+.+..++++..+
T Consensus 220 ---------V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 220 ---------VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred ---------HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccC
Confidence 56778999999999999999999999999999999999999999999999999999999988888877654
Q ss_pred CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE---------ECCCCeeEE----EeecCCCce
Q 038577 328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW---------TVSSGFCFV----TFTEHTNAV 394 (860)
Q Consensus 328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw---------d~~~~~~~~----~~~~~~~~v 394 (860)
|.+.+ .+ +... ..+..++.|+.+-+... .|.-- ++..|+.+. .+....--.
T Consensus 291 -g~i~v-~l----------gree--P~vsMd~~gKIiwa~~~--ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyP 354 (794)
T KOG0276|consen 291 -GSVTV-KL----------GREE--PAVSMDSNGKIIWAVHS--EIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYP 354 (794)
T ss_pred -CcEEE-Ec----------cCCC--CceeecCCccEEEEcCc--eeeeeeceeccCcccccCCccccchhhhccccccch
Confidence 65543 22 1222 23344455554443322 22222 223333221 111111223
Q ss_pred EEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec
Q 038577 395 TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS 474 (860)
Q Consensus 395 ~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 474 (860)
..++-+|+|+.++.+ .||.-.+|..-. +....-.....+.|.+|.+..++-..++ .|.++ ++.+..+.+.
T Consensus 355 q~L~hsPNGrfV~Vc-gdGEyiIyTala------~RnK~fG~~~eFvw~~dsne~avRes~~-~vki~--knfke~ksi~ 424 (794)
T KOG0276|consen 355 QTLAHSPNGRFVVVC-GDGEYIIYTALA------LRNKAFGSGLEFVWAADSNEFAVRESNG-NVKIF--KNFKEHKSIR 424 (794)
T ss_pred HHhccCCCCcEEEEe-cCccEEEEEeee------hhhcccccceeEEEcCCCCeEEEEecCC-ceEEE--ecceeccccc
Confidence 456778999766655 578888876322 1222333457788999977777766666 77777 5666655554
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577 475 GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP 548 (860)
Q Consensus 475 ~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 548 (860)
.... ...--.|.+|...+ ++.+++||..++..+..+... ...+.|+.+|.+++.++.+. .+++..
T Consensus 425 ~~~~----~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S-fyil~~ 489 (794)
T KOG0276|consen 425 PDMS----AEGIFGGPLLGVRS-SDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS-FYILKF 489 (794)
T ss_pred cccc----eeeecCCceEEEEe-CCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc-eeEEEe
Confidence 2211 11112355555554 667999999999865554432 35688999999999888665 444443
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-36 Score=276.59 Aligned_cols=291 Identities=23% Similarity=0.389 Sum_probs=269.0
Q ss_pred eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376 (860)
Q Consensus 297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 376 (860)
...+.+.++..+|+.+-|.|+-..+++++. +++|++||..+++....+++|...+..++|+..|+++++++.|=.+++|
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~-d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSEALVVSASE-DATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CchhhhhccccceeeeeeccCceEEEEecC-CceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 445556678889999999998777766655 4999999999999999999999999999999999999999999889999
Q ss_pred ECCC-CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577 377 TVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD 455 (860)
Q Consensus 377 d~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (860)
|..+ .+++..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++..+.. .+..+..+.||.++++++.+
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~d 256 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSND 256 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecCCeeEEEecCCC
Confidence 9986 577788889999999999999999999999999999999999999999987765 88999999999999999999
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCC---------------CCEEEEEeCCCcEEEEEccCCcceeEEcccCC
Q 038577 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT---------------NATLASSSWDKTVRLWNVFEGKGSVESFPHTH 520 (860)
Q Consensus 456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~---------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 520 (860)
. ++++|-+.+++....++.|+-+|.+++|.|. ++++.+++.|++|++||+.++.++.++.+|..
T Consensus 257 q-tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 257 Q-TLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN 335 (406)
T ss_pred c-eEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence 9 9999999999999999999999999999763 25899999999999999999999999999999
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577 521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG 600 (860)
Q Consensus 521 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 600 (860)
.|..++|+|.|+||+++.+|+++++||++++++..+++.|.. .++++.|..+..|+++|+
T Consensus 336 wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--------------------fvt~lDfh~~~p~VvTGs 395 (406)
T KOG0295|consen 336 WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--------------------FVTSLDFHKTAPYVVTGS 395 (406)
T ss_pred eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--------------------eeEEEecCCCCceEEecc
Confidence 999999999999999999999999999999999999998876 489999999999999999
Q ss_pred CCCeEEEEEC
Q 038577 601 SSKYICMYDV 610 (860)
Q Consensus 601 ~dg~v~vwd~ 610 (860)
-|..+++|.-
T Consensus 396 Vdqt~KvwEc 405 (406)
T KOG0295|consen 396 VDQTVKVWEC 405 (406)
T ss_pred ccceeeeeec
Confidence 9999999964
No 36
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.8e-36 Score=303.84 Aligned_cols=279 Identities=22% Similarity=0.383 Sum_probs=242.3
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~ 340 (860)
......++|+.|++++.++|.|..|..|++|.+... .+..++.... + ..+=..+. |-.+.+.|-.+..
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~-l---------~~~d~~sa-d~~~~~~D~~~~~ 442 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPK-KLKKLKDASD-L---------SNIDTESA-DVDVDMLDDDSSG 442 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchh-hhccccchhh-h---------cccccccc-chhhhhccccCCc
Confidence 344567899999999999999999999999999643 2222221110 0 00101111 1335566666666
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
....+.+|.++|....|+|+.++|++++.|+++|+|.+.+..++..+.+|..+|+.+.|+|.|-+++|++.|++.++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 67778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT 500 (860)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 500 (860)
......+.+..+. ..+.|+.|+|+..++++|+.|. ++++||+.+|..++.|.||.++|.+++|||+|++|++|+.||.
T Consensus 523 d~~~PlRifaghl-sDV~cv~FHPNs~Y~aTGSsD~-tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 523 DHNKPLRIFAGHL-SDVDCVSFHPNSNYVATGSSDR-TVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred ccCCchhhhcccc-cccceEEECCcccccccCCCCc-eEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 9888887776554 4789999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577 501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL 553 (860)
Q Consensus 501 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 553 (860)
|.+||+.+++.+..+.+|.+.|.++.||.||..||+|+.|.+|++||+..-..
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999999999999999999999999999865443
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-33 Score=281.79 Aligned_cols=462 Identities=13% Similarity=0.180 Sum_probs=344.3
Q ss_pred cCCcEEEe-CCCEEEeee-CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee
Q 038577 14 RGGNAVLS-QNTKLISPV-GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR 91 (860)
Q Consensus 14 ~~~~~~~s-dg~~l~~~~-~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~ 91 (860)
+...++|- ..=+|+++- .|.|++||.+=+..+..+.+|.++|..++|+|++.++++|+.|-.|+||+.++.+++.++.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence 45568888 777888875 5789999999999988888999999999999999999999999999999999999999887
Q ss_pred -cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577 92 -FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY 169 (860)
Q Consensus 92 -~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd 169 (860)
|-.-|+.+.|++.-.+|.++ .|.+|+||++.+.+ ++..++||...|.|.+|.|....++++|-|.+|||||
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-------~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-------CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-------eEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 99999999999999999999 67899999999988 6999999999999999999999999999999999999
Q ss_pred ecccccCc-----------------------ccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCC
Q 038577 170 VKEKLKGI-----------------------HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGN 226 (860)
Q Consensus 170 ~~~~~~~~-----------------------~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 226 (860)
+..-.++. .....+.+.||...|+-++|+|.-. .+++|++|..|++|.++..
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-----liVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-----LIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-----eEEecCCcceeeEEEeccc
Confidence 86542100 1123367889999999999999988 9999999999999998763
Q ss_pred CCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC
Q 038577 227 DGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR 306 (860)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~ 306 (860)
+.|.+ ....+|...|.++-|+|..+++++.+.|+.|++||+...+.+++++...
T Consensus 239 -----------------------KaWEv---DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren 292 (1202)
T KOG0292|consen 239 -----------------------KAWEV---DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN 292 (1202)
T ss_pred -----------------------cceee---hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC
Confidence 46754 4567899999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--E
Q 038577 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC--F 384 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~ 384 (860)
+....++.+|..+.++++.. +-+.+|.++.. .+.. +.+ ++.|.-.- |..|+.+|+.+.+. +
T Consensus 293 dRFW~laahP~lNLfAAgHD--sGm~VFkleRE----------rpa~--~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v 355 (1202)
T KOG0292|consen 293 DRFWILAAHPELNLFAAGHD--SGMIVFKLERE----------RPAY--AVN--GNGLFYVK-DRFIRSYDLRTQKDTAV 355 (1202)
T ss_pred CeEEEEEecCCcceeeeecC--CceEEEEEccc----------CceE--EEc--CCEEEEEc-cceEEeeecccccccee
Confidence 99999999999998887754 45555554322 2222 333 22333333 78999999987443 2
Q ss_pred EEeecC---CCceEEEEEeeCCCEEEEE-eCC-CcEEEEEccccc-----------------------------------
Q 038577 385 VTFTEH---TNAVTALHFMANNHSLLSA-SLD-GTVRAWDLFRYR----------------------------------- 424 (860)
Q Consensus 385 ~~~~~~---~~~v~~i~~~~~~~~l~s~-~~d-g~i~~wd~~~~~----------------------------------- 424 (860)
..++.. ..++.++.++|..+.++.+ ..| |..-++.+.+..
T Consensus 356 ~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v 435 (1202)
T KOG0292|consen 356 ASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQV 435 (1202)
T ss_pred EeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcce
Confidence 333322 3678889999876554444 323 333344332110
Q ss_pred eeeEeeC------CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 425 NFRTFTT------PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD 498 (860)
Q Consensus 425 ~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 498 (860)
.++.+.. +.......+.+...|.+++... + .|.+||++..+.+..++ ...|.-+.||+|..+++.-+ .
T Consensus 436 ~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll~~~-~--~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~-K 509 (1202)
T KOG0292|consen 436 VIKNLKNKVTKKLLLPESTDDIFYAGTGNLLLRSP-D--SVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLS-K 509 (1202)
T ss_pred EEecccchhhhcccCcccccceeeccCccEEEEcC-C--eEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcc-c
Confidence 0000000 0001122233333444443322 2 68888888877777765 56678888888888777665 4
Q ss_pred CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST 538 (860)
Q Consensus 499 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 538 (860)
.+|.|.+..-. ........-.|.+-+|..+|-++++..
T Consensus 510 h~i~i~~kkL~--l~~sihEtiriksgawde~gVfiYtT~ 547 (1202)
T KOG0292|consen 510 HTITIADKKLE--LLCSIHETIRIKSGAWDEDGVFIYTTL 547 (1202)
T ss_pred ceEEEEecchh--heecchheeEeeeceeccCceEEEEeh
Confidence 56777774322 222233344577778887776666553
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-36 Score=274.21 Aligned_cols=306 Identities=24% Similarity=0.416 Sum_probs=265.7
Q ss_pred EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577 133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI 212 (860)
Q Consensus 133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~ 212 (860)
+...+.+|...|+.+-|.|+-..+++++.|++|++||..++ .....++||.+.+..+.|+..|+ +++++
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg------~~e~~LrGHt~sv~di~~~a~Gk-----~l~tc 168 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETG------ELERSLRGHTDSVFDISFDASGK-----YLATC 168 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccch------hhhhhhhccccceeEEEEecCcc-----EEEec
Confidence 56778899999999999999999999999999999999999 67899999999999999999999 99999
Q ss_pred cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577 213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ 292 (860)
Q Consensus 213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~ 292 (860)
+.|-.+++||.++-
T Consensus 169 SsDl~~~LWd~~~~------------------------------------------------------------------ 182 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTF------------------------------------------------------------------ 182 (406)
T ss_pred CCccchhheeHHHH------------------------------------------------------------------
Confidence 99988999987751
Q ss_pred CCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK 372 (860)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 372 (860)
.+++..+.+|...|.+++|-|.|.++++++.+ .+|+.|+..++-++..+.+|...|..++.+.||.++++++.|.+
T Consensus 183 ---~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD-~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 183 ---FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD-NTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred ---HHHHHHhcCcccceeeEEEEecCCeeeecccc-cceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 12233334445556666666666666666554 89999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577 373 VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG 452 (860)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (860)
+++|-+.++.+...+..|..+|.+++|.|... ++...+. .+.. ..+.++.++
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~--~~~i~~a-----------------t~~~---------~~~~~l~s~ 310 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESS--YPSISEA-----------------TGST---------NGGQVLGSG 310 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEeccccc--Ccchhhc-----------------cCCC---------CCccEEEee
Confidence 99999999999999999999999999998742 1110000 0000 146688899
Q ss_pred ecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC
Q 038577 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532 (860)
Q Consensus 453 ~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 532 (860)
+.|+ +|++||+.++.++.++.+|...|..++|+|.|++|+++.+|+++++||+.+.++......|..-++++.|+.+..
T Consensus 311 SrDk-tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 311 SRDK-TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAP 389 (406)
T ss_pred cccc-eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCc
Confidence 9999 999999999999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred EEEEEeCCCeEEEEeC
Q 038577 533 QLACSTLDGQIHFWDP 548 (860)
Q Consensus 533 ~l~~~~~dg~i~iwd~ 548 (860)
++++|+-|.++++|..
T Consensus 390 ~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 390 YVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEeccccceeeeeec
Confidence 9999999999999974
No 39
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=273.58 Aligned_cols=501 Identities=14% Similarity=0.137 Sum_probs=370.6
Q ss_pred CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee---cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcc
Q 038577 51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR---FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKE 127 (860)
Q Consensus 51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~ 127 (860)
....|+++|+|.+.+.||.+-.+|.|.+|++..+=.....- ....|.+++|++.++++-++.+|.|.-||+.++++
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~- 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQ- 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCce-
Confidence 34779999999999999999999999999999865444332 46679999999999999999999999999999884
Q ss_pred cceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccc
Q 038577 128 VFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVN 207 (860)
Q Consensus 128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~ 207 (860)
...+....+.|++++.+|.+..++.|+.||.+...+...+ .- .-...+...++.+.++.|.|++.
T Consensus 103 ------~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~-~I---~~~r~l~rq~sRvLslsw~~~~~----- 167 (691)
T KOG2048|consen 103 ------KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD-KI---TYKRSLMRQKSRVLSLSWNPTGT----- 167 (691)
T ss_pred ------eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc-eE---EEEeecccccceEEEEEecCCcc-----
Confidence 6677778899999999999999999999996666666555 11 22344555679999999999998
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc-CCCCceEEEEecCCCCEEEEEEcCC
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS-QAPSKVTACDYHRGLDMVVVGFSNG 286 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g 286 (860)
.++.|+.||.|++||...+........+ ...+. ....-|.++.+-.+ ..+++|...|
T Consensus 168 ~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~---------------------~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G 225 (691)
T KOG2048|consen 168 KIAGGSIDGVIRIWDVKSGQTLHIITMQ---------------------LDRLSKREPTIVWSVLFLRD-STIASGDSAG 225 (691)
T ss_pred EEEecccCceEEEEEcCCCceEEEeeec---------------------ccccccCCceEEEEEEEeec-CcEEEecCCc
Confidence 8999999999999999886542110000 01111 13345777777754 4699999999
Q ss_pred eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEecCcccCeEEEEEcCCCC
Q 038577 287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQQGHYFDVNCLAYSPDSQ 362 (860)
Q Consensus 287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~ 362 (860)
.|.+||...+..++.+..+...|.+++..++++.+++++.+ +.+.-|...++.. ......|...|.+++..++
T Consensus 226 ~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd-~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 226 TVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVD-PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred eEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCC-CceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence 99999999999999999999999999999999999999887 8888887766533 2223568889999999877
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc--------ceeeEeeCCCC
Q 038577 363 LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY--------RNFRTFTTPSS 434 (860)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~--------~~~~~~~~~~~ 434 (860)
.+++|+.|..+.+-.....+..........+-.+.....-.++|+.--.+..+.+|.+.+. ..+..+..+..
T Consensus 303 ~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~ 382 (691)
T KOG2048|consen 303 ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK 382 (691)
T ss_pred eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCc
Confidence 8999999998887655431111111000001111111112234444444556777776544 23345556677
Q ss_pred CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-----cCcccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccC
Q 038577 435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-----SGHEGPVHGLVFSPTNATLASSS-WDKTVRLWNVFE 508 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-----~~h~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~ 508 (860)
..+.+.+.+|+|++++.+.-. .+++|.++....+... ....-....+.|+-|+..++.++ .+..+.++++.+
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~--~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ 460 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVS--RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET 460 (691)
T ss_pred cceeeeccCCCCCEEEEeecc--ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence 789999999999999999876 5888888753332222 22234567888998888887777 677888888766
Q ss_pred Ccce--eEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcE
Q 038577 509 GKGS--VESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF 584 (860)
Q Consensus 509 ~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 584 (860)
.... .... .....|..++.||+|+++|+.+.+|.|.+|++++.+.......-. ..+
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln--------------------~~v 520 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLN--------------------IDV 520 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccC--------------------cce
Confidence 5421 1111 355679999999999999999999999999999886544432211 248
Q ss_pred EEEEEec-CCCEEEEecCCCeEEEEECCCce
Q 038577 585 TTLCYSA-DGSYILAGGSSKYICMYDVADQV 614 (860)
Q Consensus 585 ~~l~~s~-~g~~l~~~~~dg~v~vwd~~~~~ 614 (860)
++++|+| +-..|+.+..++.+.-||++..+
T Consensus 521 Ta~~~~~~~~~~lvvats~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 521 TAAAFSPFVRNRLVVATSNNQVFEFDIEARN 551 (691)
T ss_pred eeeeccccccCcEEEEecCCeEEEEecchhh
Confidence 9999995 56689999999999999995544
No 40
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=253.94 Aligned_cols=290 Identities=18% Similarity=0.322 Sum_probs=241.1
Q ss_pred EeeccCCccCeeEEEEcCC-CCEEEEEcCCCcEEEEEccc---CeEEEEee--cCCceeEEEECCCCCEEEEE-eCCeEE
Q 038577 45 VTLPVESSSNICRIAVSPD-GTFLLTVDENQRCHFINLHC---HVVLHRVR--FKYPVNAILFSPNGKYIAVG-TGKLVQ 117 (860)
Q Consensus 45 ~~~~~~h~~~v~~va~spd-g~~la~~~~d~~i~vwd~~~---~~~~~~~~--~~~~v~~~~fspdg~~la~~-~~~~i~ 117 (860)
...+.+|.+.+..+||+|- |..||+++.|..|++|+... -.+...+. |+..|++++|+|.|++||++ .|.++.
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 3456699999999999998 99999999999999999885 33444443 89999999999999999999 899999
Q ss_pred EEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEE
Q 038577 118 IWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFF 197 (860)
Q Consensus 118 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 197 (860)
||.-..++ |+++..+.||...|.|++||++|++||+++.|+.|-||.++...+- .....+.+|...|..+.|
T Consensus 87 Iw~k~~~e-----fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf---ec~aVL~~HtqDVK~V~W 158 (312)
T KOG0645|consen 87 IWKKEDGE-----FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF---ECIAVLQEHTQDVKHVIW 158 (312)
T ss_pred EeecCCCc-----eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE---EEEeeeccccccccEEEE
Confidence 99877654 5689999999999999999999999999999999999999965333 567899999999999999
Q ss_pred ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCC
Q 038577 198 SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLD 277 (860)
Q Consensus 198 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 277 (860)
+|... .|++++.|.+|++|.-..+ ..|... ..+.+|...|.+++|+|.|.
T Consensus 159 HPt~d-----lL~S~SYDnTIk~~~~~~d-----------------------ddW~c~--~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 159 HPTED-----LLFSCSYDNTIKVYRDEDD-----------------------DDWECV--QTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred cCCcc-----eeEEeccCCeEEEEeecCC-----------------------CCeeEE--EEecCccceEEEEEecCCCc
Confidence 99888 9999999999999987742 245443 55677888999999999999
Q ss_pred EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce------EEE-EecCccc
Q 038577 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES------YIL-KQQGHYF 350 (860)
Q Consensus 278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~------~~~-~~~~~~~ 350 (860)
.|++++.|++++||.....- -..+...+..++|. ...|++++.+ +.|+++.-.... .+. ....|..
T Consensus 209 rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD-~~i~lf~~s~~~d~p~~~l~~~~~~aHe~ 281 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGD-DAIRLFKESDSPDEPSWNLLAKKEGAHEV 281 (312)
T ss_pred eEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCC-CEEEEEEecCCCCCchHHHHHhhhccccc
Confidence 99999999999999864211 12355678888888 4566666665 899999765421 111 2256888
Q ss_pred CeEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 038577 351 DVNCLAYSPD-SQLLATGADDNKVKVWTVS 379 (860)
Q Consensus 351 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 379 (860)
.|++++|+|. .++|++|+.||.|++|.+.
T Consensus 282 dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 282 DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999994 6799999999999999864
No 41
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.1e-32 Score=270.20 Aligned_cols=454 Identities=13% Similarity=0.184 Sum_probs=338.4
Q ss_pred cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeecc-CCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577 92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADC-NDKVTALNWSPDSNYLLVGSKDLAVRLFY 169 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~~dg~v~vwd 169 (860)
.+.+|.++|||.+.+.||++ .+|.|.||++...-. +...+.++ ...|.+++|+ ++..|++.+.+|.|.-||
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~------~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD 96 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF------LEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD 96 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCce------eeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence 37889999999999999999 899999999987532 45566666 5569999999 466799999999999999
Q ss_pred ecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577 170 VKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249 (860)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (860)
+.+. ..........+.|++++.+|.+. .++.+++||.+..++...+.
T Consensus 97 l~~l------k~~~~~d~~gg~IWsiai~p~~~-----~l~IgcddGvl~~~s~~p~~---------------------- 143 (691)
T KOG2048|consen 97 LHTL------KQKYNIDSNGGAIWSIAINPENT-----ILAIGCDDGVLYDFSIGPDK---------------------- 143 (691)
T ss_pred cccC------ceeEEecCCCcceeEEEeCCccc-----eEEeecCCceEEEEecCCce----------------------
Confidence 9998 77888899999999999999998 99999999977777666532
Q ss_pred eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec--------CceeEEEEEeeCCCEE
Q 038577 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS--------REKITTAVFNELGNWL 321 (860)
Q Consensus 250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l 321 (860)
+.....+....+.+.++.|+|++..++.|+.||.|++||...+..++..... ..-|.++.|-.++ .+
T Consensus 144 ----I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI 218 (691)
T KOG2048|consen 144 ----ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TI 218 (691)
T ss_pred ----EEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cE
Confidence 2334455566789999999999999999999999999999988877632221 1235666666444 45
Q ss_pred EEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----EEEeecCCCceEEE
Q 038577 322 VFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC----FVTFTEHTNAVTAL 397 (860)
Q Consensus 322 ~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~i 397 (860)
+++.+. |.|.+||...+..+.....|...|.|++..+++.++++++.|+.|..|...++.. ......|...|.++
T Consensus 219 ~sgDS~-G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~ 297 (691)
T KOG2048|consen 219 ASGDSA-GTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSM 297 (691)
T ss_pred EEecCC-ceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceee
Confidence 555554 9999999999999999999999999999999999999999999999998776533 22345688999999
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEE-EEECCCCCEEEEEecCCCeEEEEECCCCc--------
Q 038577 398 HFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS-LASDQSGEVICAGTLDSFEIFVWSMKTGR-------- 468 (860)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-------- 468 (860)
+..++ .+++||.|..+.+-.....+..... .+....-.+ +...|..+++ .--... .+.+|.+.+..
T Consensus 298 av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~-~~~~~p~~~~v~~a~~~~L~-~~w~~h-~v~lwrlGS~~~~g~~~~~ 372 (691)
T KOG2048|consen 298 AVIEN--ALISGGRDFTLAICSSREFKNMDHR-QKNLFPASDRVSVAPENRLL-VLWKAH-GVDLWRLGSVILQGEYNYI 372 (691)
T ss_pred eeecc--eEEecceeeEEEEccccccCchhhh-ccccccccceeecCccceEE-EEeccc-cccceeccCcccccccChh
Confidence 99877 8999999999888665442211111 111111112 2233333333 332232 57777776541
Q ss_pred -eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-----ccCCCeEEEEEeeCCCEEEEEe-CCC
Q 038577 469 -LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-----PHTHDVLTVVYRPDGRQLACST-LDG 541 (860)
Q Consensus 469 -~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~-~dg 541 (860)
+.+........|.+.+.||+|++++.+. -..+++|.+.....+.... ...-.+..+.|+-|+..++.++ ...
T Consensus 373 ~Llkl~~k~~~nIs~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~ 451 (691)
T KOG2048|consen 373 HLLKLFTKEKENISCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIF 451 (691)
T ss_pred hheeeecCCccceeeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccc
Confidence 2222233456799999999999999876 3457888886643222211 2344678889999999888887 677
Q ss_pred eEEEEeCCCCceeE--EEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceE
Q 038577 542 QIHFWDPLNGELMY--TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVL 615 (860)
Q Consensus 542 ~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~ 615 (860)
.+.++++.+..... .+... ....+|+.+..||+|+||++.+..|.|.+|++++++.
T Consensus 452 ~le~~el~~ps~kel~~~~~~------------------~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~ 509 (691)
T KOG2048|consen 452 SLEEFELETPSFKELKSIQSQ------------------AKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES 509 (691)
T ss_pred eeEEEEecCcchhhhhccccc------------------cCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee
Confidence 78888877654322 22111 1123599999999999999999999999999998754
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-35 Score=269.36 Aligned_cols=294 Identities=19% Similarity=0.348 Sum_probs=270.6
Q ss_pred ceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccce
Q 038577 129 FAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR 208 (860)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~ 208 (860)
.|+++.+.+.+|.++|.|+++.|...++++|+.|++++|||+.++ ....++.||...|..+++++... +
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg------~LkltltGhi~~vr~vavS~rHp-----Y 207 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG------QLKLTLTGHIETVRGVAVSKRHP-----Y 207 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC------eEEEeecchhheeeeeeecccCc-----e
Confidence 467788999999999999999999999999999999999999999 78899999999999999999988 9
Q ss_pred EEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeE
Q 038577 209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVF 288 (860)
Q Consensus 209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i 288 (860)
+++++.|+.|+.||++.+.. ...+.+|-+.|.|++.+|.-+.|++|+.|..+
T Consensus 208 lFs~gedk~VKCwDLe~nkv----------------------------IR~YhGHlS~V~~L~lhPTldvl~t~grDst~ 259 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYNKV----------------------------IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTI 259 (460)
T ss_pred EEEecCCCeeEEEechhhhh----------------------------HHHhccccceeEEEeccccceeEEecCCcceE
Confidence 99999999999999997532 45667899999999999999999999999999
Q ss_pred EEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577 289 GLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA 368 (860)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 368 (860)
++||+.+...+..+.+|..+|..+.+.|....+++++.+ ++|++||+..++....+..|...|.+++.+|....+|+++
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D-~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas 338 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD-STVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS 338 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC-ceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC
Confidence 999999999999999999999999999999999988776 9999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC-------CCCCcEEEEE
Q 038577 369 DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT-------PSSRQFVSLA 441 (860)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-------~~~~~~~~~~ 441 (860)
.| .|+-|++..|..+..+.+|+.-|.+++...|+ ++++|+..|.+.+||.+++...+.... .....+.+.+
T Consensus 339 ~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~ 416 (460)
T KOG0285|consen 339 PD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASC 416 (460)
T ss_pred Cc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEe
Confidence 87 79999999999999999999999999998887 889999999999999998876665521 2345688999
Q ss_pred ECCCCCEEEEEecCCCeEEEEECC
Q 038577 442 SDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 442 ~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
|+..|..|+++..|. +|++|.-.
T Consensus 417 fDktg~rlit~eadK-tIk~~keD 439 (460)
T KOG0285|consen 417 FDKTGSRLITGEADK-TIKMYKED 439 (460)
T ss_pred ecccCceEEeccCCc-ceEEEecc
Confidence 999999999999999 99999754
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=283.80 Aligned_cols=283 Identities=20% Similarity=0.356 Sum_probs=252.2
Q ss_pred CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 038577 306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFV 385 (860)
Q Consensus 306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 385 (860)
...|..+.|.|+|+.|++++.. |.+.+|+..+-.....++.|..+|+++.|+++|.++++|+.+|.|++|+..-.....
T Consensus 96 kc~V~~v~WtPeGRRLltgs~S-GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQS-GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeeccc-ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 4579999999999999999887 999999986655555568999999999999999999999999999999976544443
Q ss_pred EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
....|...|++++|+|+...+++++.||+|++||....+..+.+. .+.-.+.++.|+|....+++++.|+ .|++||.+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP~kgLiasgskDn-lVKlWDpr 252 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPR 252 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceeccCCccceeEEccCCc-eeEeecCC
Confidence 334455899999999999999999999999999999888888774 4556899999999999999999999 99999999
Q ss_pred CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee-CCCEEEEEeCCCeEE
Q 038577 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP-DGRQLACSTLDGQIH 544 (860)
Q Consensus 466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 544 (860)
++.++.++.+|+..|..+.|+|++++|+++|.|..++++|+++.+.+....+|...+++++|+| ...+|.+|+.||.|.
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceE
Confidence 9999999999999999999999999999999999999999998887888889999999999999 566889999999999
Q ss_pred EEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 545 FWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 545 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
.|.+...+++..+...++ ..|++++|.|=|..|++|+.|.++++|.-
T Consensus 333 h~~v~~~~p~~~i~~AHd-------------------~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHD-------------------GEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEeccccccccCCCcccc-------------------cceeeeeccccceeEeecCCCcceeeecc
Confidence 999986666555544333 47999999999999999999999999964
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.5e-36 Score=282.79 Aligned_cols=283 Identities=21% Similarity=0.330 Sum_probs=255.6
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577 263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI 342 (860)
Q Consensus 263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~ 342 (860)
....|..+.|.|+|+.|++|+..|.+.+|+.........++.|...|+++.|+++|.+++++... |.|++|+..-....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g-G~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKG-GMIKYWQPNMNNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCC-ceEEecccchhhhH
Confidence 34579999999999999999999999999997777777788899999999999999999988765 99999997765544
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 422 (860)
.....|...|++++|+|+...+++++.||+|+|||....+....+.+|.-.|.++.|+|....++++|.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 44445668999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcE
Q 038577 423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTV 501 (860)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i 501 (860)
+.++.++..+. ..|..+.|++++++|++++.|. .+++||+++.+.+..+++|...|+++.|+|- ..+|.+|+.||.|
T Consensus 254 g~cl~tlh~HK-ntVl~~~f~~n~N~Llt~skD~-~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 254 GSCLATLHGHK-NTVLAVKFNPNGNWLLTGSKDQ-SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred cchhhhhhhcc-ceEEEEEEcCCCCeeEEccCCc-eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 99998876544 4799999999999999999999 9999999999999999999999999999994 5688999999999
Q ss_pred EEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577 502 RLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP 548 (860)
Q Consensus 502 ~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 548 (860)
..|.+...+++... .+|...|++++|+|=|.+|++|+.|.++++|.-
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99999855544444 369999999999999999999999999999974
No 45
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-35 Score=300.27 Aligned_cols=282 Identities=24% Similarity=0.394 Sum_probs=247.5
Q ss_pred eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT 377 (860)
Q Consensus 298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 377 (860)
+..++......++|..|++|+..+|.+..+ ..|++|.+...+... ++. . .+ ...+=+.+.|-.+.+.|
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~d-S~i~~~Sl~p~kl~~-lk~-~------~~---l~~~d~~sad~~~~~~D 437 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVD-SSVRVWSLTPKKLKK-LKD-A------SD---LSNIDTESADVDVDMLD 437 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccc-cEEEEEecchhhhcc-ccc-h------hh---hccccccccchhhhhcc
Confidence 344555566789999999999977777665 999999987653221 111 1 11 11222445555677888
Q ss_pred CCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC
Q 038577 378 VSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF 457 (860)
Q Consensus 378 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 457 (860)
..+.....++.+|.++|....|+|+.++|++++.|+++|+|.+.+..+...+. .+..++..+.|+|.|-++|+++.|.
T Consensus 438 ~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~- 515 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQ- 515 (707)
T ss_pred ccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCc-
Confidence 88888888899999999999999999999999999999999999999998888 6667999999999999999999998
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEE
Q 038577 458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS 537 (860)
Q Consensus 458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 537 (860)
+-++|.....++++.+.+|-+.|.|+.|+|+..++++||.|.+||+||+.++..+..+.+|.++|++++|||+|++|++|
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASG 595 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeec
Confidence 99999999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 538 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
+.||.|.+||+.+++++..+.+|.+ .|.++.||.||..||+|+.|.+|++||+..-
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~--------------------ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTG--------------------TIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccC--------------------ceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999999999976 4999999999999999999999999998754
No 46
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.5e-34 Score=255.87 Aligned_cols=288 Identities=24% Similarity=0.380 Sum_probs=255.2
Q ss_pred eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc-cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW-RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376 (860)
Q Consensus 298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 376 (860)
++..+.+|.+.|..+.|+|+|..+++++.+ ..|.+|+. ...+....+.+|.+.|..+.|.+|++.+++++.|.+++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~D-r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSD-RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCc-ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 345567889999999999999999999887 99999995 4456667778999999999999999999999999999999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD 455 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (860)
|+++|++.+.+++|..-|..+..+.-|. .+.+++.|+++++||+++...++++... .+++++.|...+..+.+|+-|
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k--yqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK--YQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccc--eeEEEEEecccccceeecccc
Confidence 9999999999999999999998666564 5568889999999999988888777544 478999999999999999999
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc---c-eeEEcc--c--CCCeEEEEE
Q 038577 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK---G-SVESFP--H--THDVLTVVY 527 (860)
Q Consensus 456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~-~~~~~~--~--~~~v~~~~~ 527 (860)
+ .|++||++.+.....+.||..+|+.+..+|+|.++.+-+.|.++++||++... . +..+.+ | ......++|
T Consensus 196 n-~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 196 N-DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred C-ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 9 99999999999999999999999999999999999999999999999986532 2 333333 2 234567899
Q ss_pred eeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEE
Q 038577 528 RPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM 607 (860)
Q Consensus 528 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v 607 (860)
+|+++.+.+|+.|..+++||......+..+++|.. .|.++.|.|...+|.+++.|.+|++
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--------------------svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--------------------SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcce--------------------eEEEeeecCCCcEEEEeccCceeEe
Confidence 99999999999999999999999999999999987 4999999999999999999999987
Q ss_pred EE
Q 038577 608 YD 609 (860)
Q Consensus 608 wd 609 (860)
=+
T Consensus 335 ge 336 (338)
T KOG0265|consen 335 GE 336 (338)
T ss_pred ec
Confidence 44
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=253.46 Aligned_cols=291 Identities=23% Similarity=0.324 Sum_probs=260.9
Q ss_pred cceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF 260 (860)
Q Consensus 181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (860)
....+.+|.+.|..+.|+|+|. .+++++.|..|.+|+...... ....+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs-----~~aSgG~Dr~I~LWnv~gdce---------------------------N~~~l 86 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGS-----CFASGGSDRAIVLWNVYGDCE---------------------------NFWVL 86 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCC-----eEeecCCcceEEEEecccccc---------------------------ceeee
Confidence 4567889999999999999999 999999999999999776432 12334
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~ 340 (860)
.+|.+.|..+.|.+|++.+++++.|.+++.||..+++.++.++.|..-+..+..+.-|..++.++++|+++++||+++..
T Consensus 87 kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred ccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 58999999999999999999999999999999999999999999999999999888999999999999999999999888
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
.+..+.. ...++++.|..++..+.+|+-|+.|++||++.+.....+.+|.++|+.+..+++|.++.+-+.|.++++||+
T Consensus 167 ~~~t~~~-kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~ 245 (338)
T KOG0265|consen 167 AIKTFEN-KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV 245 (338)
T ss_pred hhhcccc-ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence 8776643 456999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc----ceeeEeeCCC---CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577 421 FRY----RNFRTFTTPS---SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA 493 (860)
Q Consensus 421 ~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 493 (860)
+-. +++..+.... ......++++|+++.+.+|+.|. .+++||..+...+..++||.+.|.+++|+|...+|.
T Consensus 246 rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr-~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 246 RPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADR-FVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred cccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccc-eEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence 753 3344444322 23456789999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEE
Q 038577 494 SSSWDKTVRLWN 505 (860)
Q Consensus 494 s~~~dg~i~iwd 505 (860)
+++.|++|++=.
T Consensus 325 s~~sdk~i~lge 336 (338)
T KOG0265|consen 325 SCSSDKTIYLGE 336 (338)
T ss_pred EeccCceeEeec
Confidence 999999998743
No 48
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=242.82 Aligned_cols=290 Identities=26% Similarity=0.391 Sum_probs=231.7
Q ss_pred EEEEeeccCCCeEEEEEcCC-CCeEEEeecCCeEEEEeecccccCcccccceEe-ecCCCcEEEEEEccCCCCCccceEE
Q 038577 133 LIRTLADCNDKVTALNWSPD-SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL-LGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 133 ~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
.++.+.+|.+++..++|+|- |..||+++.|+.|++|+...+... .....+ .+|+..|.+++|+|.|+ +|+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~---~ck~vld~~hkrsVRsvAwsp~g~-----~La 77 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSW---TCKTVLDDGHKRSVRSVAWSPHGR-----YLA 77 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcE---EEEEeccccchheeeeeeecCCCc-----EEE
Confidence 57889999999999999998 889999999999999999853111 222222 46888888888888888 888
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~ 290 (860)
+++.|.++.+|.-..+
T Consensus 78 ~aSFD~t~~Iw~k~~~---------------------------------------------------------------- 93 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDG---------------------------------------------------------------- 93 (312)
T ss_pred EeeccceEEEeecCCC----------------------------------------------------------------
Confidence 8888888888854432
Q ss_pred EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc---eEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE---SYILKQQGHYFDVNCLAYSPDSQLLATG 367 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 367 (860)
+.+++..+.+|...|.+++|+++|++|++++.+ ..+-||....+ .+...++.|...|..+.|+|...+|+++
T Consensus 94 ----efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD-KSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~ 168 (312)
T KOG0645|consen 94 ----EFECVATLEGHENEVKCVAWSASGNYLATCSRD-KSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSC 168 (312)
T ss_pred ----ceeEEeeeeccccceeEEEEcCCCCEEEEeeCC-CeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEe
Confidence 334556666777777777777777777776655 77777777633 4566778999999999999999999999
Q ss_pred eCCCcEEEEECC---CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC
Q 038577 368 ADDNKVKVWTVS---SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ 444 (860)
Q Consensus 368 ~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (860)
+.|++|++|+-. ...+.+++.+|...|.+++|++.|..|++++.|+++++|... ..+...+...+..+++.
T Consensus 169 SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W~- 242 (312)
T KOG0645|consen 169 SYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPWD- 242 (312)
T ss_pred ccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccceEeeeec-
Confidence 999999999866 347899999999999999999999999999999999999865 23444455677788887
Q ss_pred CCCEEEEEecCCCeEEEEECCCCc------eE-EEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEcc
Q 038577 445 SGEVICAGTLDSFEIFVWSMKTGR------LL-DILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVF 507 (860)
Q Consensus 445 ~~~~l~~~~~~~~~i~v~d~~~~~------~~-~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~ 507 (860)
...|++++.|+ .|++|.-...- ++ ..-..|...|++++|.|. ..+|++++.||.|++|.+.
T Consensus 243 -~~~IaS~ggD~-~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 243 -NGVIASGGGDD-AIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred -ccceEeccCCC-EEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 66788888888 99999766431 11 233568899999999995 6789999999999999874
No 49
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.5e-34 Score=259.70 Aligned_cols=287 Identities=19% Similarity=0.333 Sum_probs=264.5
Q ss_pred ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
..+.+|.+.|.|+++.|..+++++|+.|+++.|||+.+++...++.+|...+..+++|+-..++++++.+ +.|+.||++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged-k~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED-KQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC-CeeEEEech
Confidence 5577899999999999999999999999999999999999999999999999999999999999988766 999999999
Q ss_pred CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA 417 (860)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~ 417 (860)
..+.++.+.+|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577 418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW 497 (860)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 497 (860)
||+..++....+..+ ...+.+++.+|....+|+++.| .|+-|++..|..++.+.+|...|.+++...|+ ++++|++
T Consensus 304 WDl~agkt~~tlt~h-kksvral~lhP~e~~fASas~d--nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~d 379 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHH-KKSVRALCLHPKENLFASASPD--NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGD 379 (460)
T ss_pred eeeccCceeEeeecc-cceeeEEecCCchhhhhccCCc--cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCC
Confidence 999999988877654 4578999999999999999998 59999999999999999999999999998776 7889999
Q ss_pred CCcEEEEEccCCcceeEEc--------ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577 498 DKTVRLWNVFEGKGSVESF--------PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL 549 (860)
Q Consensus 498 dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 549 (860)
.|.+.+||.+++....... .....|.+.+|...|..|++|..|.+|++|.-.
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 9999999999886433321 245678999999999999999999999999754
No 50
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-33 Score=263.66 Aligned_cols=301 Identities=20% Similarity=0.319 Sum_probs=246.6
Q ss_pred eeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577 130 AFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI 209 (860)
Q Consensus 130 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l 209 (860)
|.+..+.+..|.+.|+-+.||++|+|||+++.|.+..+|++..... .....++.+|..+|..+.|+||.+ ++
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---~kl~~tlvgh~~~V~yi~wSPDdr-----yL 284 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---FKLKKTLVGHSQPVSYIMWSPDDR-----YL 284 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc---eeeeeeeecccCceEEEEECCCCC-----eE
Confidence 3344677889999999999999999999999999999999987622 255789999999999999999999 99
Q ss_pred EEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEE
Q 038577 210 YTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFG 289 (860)
Q Consensus 210 ~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~ 289 (860)
++|+.|..+.+||..++.. ....-.++...+.+++|.|||..+++|+.|+.+.
T Consensus 285 laCg~~e~~~lwDv~tgd~---------------------------~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~ 337 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDL---------------------------RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTII 337 (519)
T ss_pred EecCchHheeeccCCcchh---------------------------hhhcccCcCCCcceeEEccCCceeEecCCCCcEE
Confidence 9999999999999999764 1111122456899999999999999999999999
Q ss_pred EEECCCceeEEEEeecC-ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577 290 LYQMPDFVCIHLLSISR-EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA 368 (860)
Q Consensus 290 ~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 368 (860)
.|++ ++......++-. ..|.+++.++||+++++.+.+ ..+++++.++........ ...+|+++++|.+++++++--
T Consensus 338 ~wdl-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d-~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 338 MWDL-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVD-KKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred EecC-CcchhhcccccccceeEEEEEcCCCcEEEEEecc-cceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc
Confidence 9999 455555554433 469999999999999999876 999999988766554333 345799999999999999999
Q ss_pred CCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE
Q 038577 369 DDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448 (860)
Q Consensus 369 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (860)
.+..+++||++....++.+.+|... ++++-.+-.| .+..+
T Consensus 415 ~~qei~LWDl~e~~lv~kY~Ghkq~----------~fiIrSCFgg------------------------------~~~~f 454 (519)
T KOG0293|consen 415 QDQEIHLWDLEENKLVRKYFGHKQG----------HFIIRSCFGG------------------------------GNDKF 454 (519)
T ss_pred ccCeeEEeecchhhHHHHhhccccc----------ceEEEeccCC------------------------------CCcce
Confidence 9999999999988888888888643 2332111111 12356
Q ss_pred EEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCC
Q 038577 449 ICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEG 509 (860)
Q Consensus 449 l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~ 509 (860)
+++|+.|+ .|+||+..+|+++..+.||...|++++|+|.. ..+|+++.||+|+||.....
T Consensus 455 iaSGSED~-kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDS-KVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCc-eEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 77777777 88888889999999999999999999999965 56999999999999987543
No 51
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=263.08 Aligned_cols=286 Identities=25% Similarity=0.367 Sum_probs=243.5
Q ss_pred cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577 92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~ 170 (860)
|...|..+.||++|+|||++ .|.+..+|.+..... +++..++.+|..+|..+.||||.++|++++.|..+.+||+
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~----~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH----FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc----eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 88999999999999999999 788999999876542 5678999999999999999999999999999999999999
Q ss_pred cccccCcccccceEe-ecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577 171 KEKLKGIHTNKPFLL-LGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249 (860)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (860)
.++ ...... .+|...+.+++|.|||. .+++|+.|+++..||++++..
T Consensus 299 ~tg------d~~~~y~~~~~~S~~sc~W~pDg~-----~~V~Gs~dr~i~~wdlDgn~~--------------------- 346 (519)
T KOG0293|consen 299 DTG------DLRHLYPSGLGFSVSSCAWCPDGF-----RFVTGSPDRTIIMWDLDGNIL--------------------- 346 (519)
T ss_pred Ccc------hhhhhcccCcCCCcceeEEccCCc-----eeEecCCCCcEEEecCCcchh---------------------
Confidence 998 223222 23568899999999999 999999999999999998543
Q ss_pred eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC
Q 038577 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG 329 (860)
Q Consensus 250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g 329 (860)
..|.-.. ...|.+++.++||+++++.+.|..|++|+..+......+ ....+|++...|.|++++++.-.+ .
T Consensus 347 ~~W~gvr-------~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~-q 417 (519)
T KOG0293|consen 347 GNWEGVR-------DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQD-Q 417 (519)
T ss_pred hcccccc-------cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEccc-C
Confidence 4554332 246999999999999999999999999998766555433 345689999999999998887766 9
Q ss_pred cEEEEEccCceEEEEecCcccC--eEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC-CE
Q 038577 330 QLLVWEWRSESYILKQQGHYFD--VNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN-HS 405 (860)
Q Consensus 330 ~i~v~d~~~~~~~~~~~~~~~~--v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~ 405 (860)
.+.+||++....+.++.+|... +..-+|-- +..++++|+.|+.|+||+..+++++.++.+|...|.+++|+|.. ..
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m 497 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEM 497 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHH
Confidence 9999999998888888888654 22333433 45799999999999999999999999999999999999999965 67
Q ss_pred EEEEeCCCcEEEEEccc
Q 038577 406 LLSASLDGTVRAWDLFR 422 (860)
Q Consensus 406 l~s~~~dg~i~~wd~~~ 422 (860)
++++|.||+|++|....
T Consensus 498 ~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPSD 514 (519)
T ss_pred hhccCCCCeEEEecCCc
Confidence 89999999999998754
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-32 Score=277.84 Aligned_cols=287 Identities=30% Similarity=0.534 Sum_probs=259.4
Q ss_pred EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577 300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS 379 (860)
Q Consensus 300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 379 (860)
..+..|..+|.+++|+|+++.+++++.+ |.+.+|++.++........|...+..+.|+|+++.+++++.+|.|++|++.
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~-g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGD-GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecC-cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3456788899999999999999988765 999999999988888888899999999999999999999999999999999
Q ss_pred CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577 380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459 (860)
Q Consensus 380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 459 (860)
+++....+..|...+.++.|++++..+++++.|+.+.+||+.+.+....+. .+...+.++.++|++.+++++..++ .+
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~-~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDG-TI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCC-cE
Confidence 988888898999999999999998888888889999999999887777766 3455799999999999998888677 99
Q ss_pred EEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC
Q 038577 460 FVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL 539 (860)
Q Consensus 460 ~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 539 (860)
++||+++++....+..|...+.++.|+|+++.+++++.|+.|++||+..++.......|...+.++.|+|++.++++++.
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence 99999999999999999999999999999999999999999999999988766666588889999999999889988888
Q ss_pred CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 540 DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 540 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
||.|++||+.+++....+..|.. .|.+++|+|++++|++++.||.+++|+
T Consensus 240 ~~~i~i~~~~~~~~~~~~~~~~~--------------------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 240 DGTIRVWDLRTGECVQTLSGHTN--------------------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCcEEEEEcCCceeEEEccccCC--------------------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999999999998888886654 599999999999999999999999996
No 53
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.6e-31 Score=273.36 Aligned_cols=285 Identities=28% Similarity=0.512 Sum_probs=260.2
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE 339 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~ 339 (860)
+.+|...|.+++|+|+++++++++.+|.+.+|++.+++....+..+...+..+.|+++++.+++++.+ |.+.+|++.++
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-~~i~i~~~~~~ 83 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD-KTIRLWDLETG 83 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC-CeEEEEEcCcc
Confidence 44678899999999999999999999999999999888888888888899999999999888888765 99999999998
Q ss_pred eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577 340 SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419 (860)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 419 (860)
+....+..|...+.++.|++++.++++++.+|.+++||+.+++....+..|...+.++.|+|++.++++++.|+.+++||
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEE
Confidence 88888888988999999999998898888899999999999999999988999999999999988888888899999999
Q ss_pred ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK 499 (860)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 499 (860)
+.+++....+.. +...+.++.++|+++.+++++.++ .+++||+++++.+..+..|...+.+++|+|++.++++++.||
T Consensus 164 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~-~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 164 LRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDG-TIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred ccccccceeEec-CccccceEEECCCcCEEEEecCCC-cEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 998887777763 344789999999999999998877 999999999999999988999999999999998999888899
Q ss_pred cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 500 TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 500 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
.|++||+.+++....+..|...+.+++|+|++++|++++.||.+++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999998877777778889999999999999999999999999996
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=272.18 Aligned_cols=288 Identities=22% Similarity=0.380 Sum_probs=261.8
Q ss_pred eccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCC-ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577 257 KDDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPD-FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVW 334 (860)
Q Consensus 257 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~ 334 (860)
...+.+|...|+++.|.| .+.+|++++.|+.|+||++-. +.+++++.+|..+|..++|+++|..+++++.+ +.+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD-~~lKlw 285 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD-RFLKLW 285 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc-eeeeee
Confidence 456789999999999999 888999999999999999876 89999999999999999999999999999887 999999
Q ss_pred EccCceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577 335 EWRSESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 335 d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
|+++|+++..+.. ...++|+.|.|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|+++++.+.|+
T Consensus 286 DtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 9999999988753 3458999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC---ceEEEecCcc--cCeEEEEEcCC
Q 038577 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG---RLLDILSGHE--GPVHGLVFSPT 488 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~h~--~~v~~l~~s~~ 488 (860)
++++|+......++....+......++..+|++.++++-+.++ .|.+|.+... .....+.||. +--..+.||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN-~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN-YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc-eEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 9999999998888888777777889999999999999999998 9999987643 2235567775 45677899999
Q ss_pred CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC-CCEEEEEeCCCeEEEEe
Q 038577 489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD-GRQLACSTLDGQIHFWD 547 (860)
Q Consensus 489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd 547 (860)
|.+|++|+.||.+.+||..+.+....+..|..++..+.|+|. ...+|+++.||.|++||
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999988888899999999999994 55899999999999996
No 55
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.7e-32 Score=287.89 Aligned_cols=287 Identities=24% Similarity=0.447 Sum_probs=261.2
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc-c
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW-R 337 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~-~ 337 (860)
..+...+.++.|+++|+.++.++.++.+++|+....+ ..+.+..|...|..++|+|++++++.++.+ +++++||+ .
T Consensus 156 ~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D-~tiriwd~~~ 234 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD-KTLRIWDLKD 234 (456)
T ss_pred ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCC-ceEEEeeccC
Confidence 3346789999999999999999999999999997777 777778899999999999999988877665 99999999 5
Q ss_pred CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA 417 (860)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~ 417 (860)
.+..+..+.+|...|++++|+|+|+.+++|+.|++|++||++++++...+.+|.+.|++++|+++++++++++.|+.|++
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~v 314 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRV 314 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEE
Confidence 56888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccc--eeeEeeCCCCC-cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCe---EEEEEcCCCCE
Q 038577 418 WDLFRYR--NFRTFTTPSSR-QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV---HGLVFSPTNAT 491 (860)
Q Consensus 418 wd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v---~~l~~s~~~~~ 491 (860)
||+.++. +...+...... .+.++.|+|++.+++++..|+ .+++||+..++....+.+|...+ .+...++.+++
T Consensus 315 wd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~-~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 315 WDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR-TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred EECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC-eEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 9999998 55666665555 789999999999999999999 99999999999999999998753 34456778999
Q ss_pred EEEEeCCCcEEEEEccCCcceeEEccc-CCCeEEEEEeeCCCEEEEEe--CCCeEEEEeCC
Q 038577 492 LASSSWDKTVRLWNVFEGKGSVESFPH-THDVLTVVYRPDGRQLACST--LDGQIHFWDPL 549 (860)
Q Consensus 492 l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~ 549 (860)
+++++.|+.|++||+.++..+....+| ...+..+.++|..+++++++ .|+.+++|..+
T Consensus 394 i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999999999998877888889 88999999999999999998 78899999753
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=285.84 Aligned_cols=283 Identities=27% Similarity=0.490 Sum_probs=256.4
Q ss_pred CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCe
Q 038577 306 REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV-SSGF 382 (860)
Q Consensus 306 ~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~~ 382 (860)
...+.++.|+++|+.++.++.+ +.+++|+....+ ....+.+|...|.+++|+|+++++++++.|++|++||+ ..+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~-~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSD-GLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCC-CcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 5688999999999997777666 999999997777 66666889999999999999999999999999999999 5668
Q ss_pred eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW 462 (860)
Q Consensus 383 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~ 462 (860)
.++++.+|...|++++|+|+++.+++|+.|++|++||++++++.+.+..+.. .+.+++|++++.++++++.|+ .|++|
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~-~i~vw 315 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDG-TIRVW 315 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCc-cEEEE
Confidence 9999999999999999999999999999999999999999999999887765 899999999999999998888 99999
Q ss_pred ECCCCc--eEEEecCcccC--eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC---eEEEEEeeCCCEEE
Q 038577 463 SMKTGR--LLDILSGHEGP--VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD---VLTVVYRPDGRQLA 535 (860)
Q Consensus 463 d~~~~~--~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~ 535 (860)
|+.++. +...+.++..+ ++++.|+|++.++++++.|+.+++||+..+.......+|... +.+...++.+.+++
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEE
Confidence 999999 56777777665 999999999999999999999999999999888888887774 44556678999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecc-cccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec--CCCeEEEEECC
Q 038577 536 CSTLDGQIHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG--SSKYICMYDVA 611 (860)
Q Consensus 536 ~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~--~dg~v~vwd~~ 611 (860)
+|+.|+.|++||+.++..+..+.+| .. .+..+.++|...++++++ .|+.+++|..+
T Consensus 396 sg~~d~~v~~~~~~s~~~~~~l~~h~~~--------------------~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSSGGILQRLEGHSKA--------------------AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCceEEEEeCCccchhhhhcCCCCC--------------------ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999999999999998 43 489999999999999998 78999999754
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.9e-32 Score=232.88 Aligned_cols=285 Identities=21% Similarity=0.368 Sum_probs=251.7
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 422 (860)
..+..+.++|..+.|+-+|++.++++.|.+|++|+...+.++.++.+|...|..++.+.|+..++++|.|..+.+||+.+
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC--CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT--GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT 500 (860)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~--~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 500 (860)
++..+.+..+. .++..+.|+.+...+++|+.|. .+++||.++ .++++.+......|.++..+ +..+++|+.||+
T Consensus 91 Gkv~Rr~rgH~-aqVNtV~fNeesSVv~SgsfD~-s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 91 GKVDRRFRGHL-AQVNTVRFNEESSVVASGSFDS-SVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred Ceeeeeccccc-ceeeEEEecCcceEEEeccccc-eeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 99999988654 5899999999999999999999 999999986 46788888888999999884 678999999999
Q ss_pred EEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCC
Q 038577 501 VRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS 580 (860)
Q Consensus 501 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (860)
++.||++.+...... ...+|+++.|++|++..++++.|+++++.|-.+|+++...++|...
T Consensus 167 vRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~----------------- 227 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM----------------- 227 (307)
T ss_pred EEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc-----------------
Confidence 999999998744444 4568999999999999999999999999999999999999999863
Q ss_pred CCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCcccccc
Q 038577 581 GKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVE 660 (860)
Q Consensus 581 ~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (860)
..=...+++.....+++|++||.|++||+..+.++.++....
T Consensus 228 -eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~------------------------------------- 269 (307)
T KOG0316|consen 228 -EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS------------------------------------- 269 (307)
T ss_pred -eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC-------------------------------------
Confidence 234677888889999999999999999999988876554211
Q ss_pred ccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEe
Q 038577 661 KQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709 (860)
Q Consensus 661 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~ 709 (860)
..-+..+.+.|.-..|++++..+...|.
T Consensus 270 ---------------------~v~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 270 ---------------------TVIVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred ---------------------ceeEEeeecccCccceeEecCCceecee
Confidence 0136788888888889999999987664
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.1e-30 Score=297.32 Aligned_cols=313 Identities=16% Similarity=0.253 Sum_probs=254.1
Q ss_pred CCeEEEEECCCceeEEEEe-----ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--------EEEEecCcccC
Q 038577 285 NGVFGLYQMPDFVCIHLLS-----ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--------YILKQQGHYFD 351 (860)
Q Consensus 285 ~g~i~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--------~~~~~~~~~~~ 351 (860)
+|.+++|+.........+. .|...|.+++|+|+|+++++++.+ +.|++|+..... ....+. +...
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D-~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~ 534 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVN-KKIKIFECESIIKDGRDIHYPVVELA-SRSK 534 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCC-CEEEEEECCcccccccccccceEEec-ccCc
Confidence 5677888887665544333 367889999999999999988766 999999975421 122222 3467
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee-CCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577 352 VNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTF 429 (860)
Q Consensus 352 v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 429 (860)
+.+++|++. +.+|++++.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++++.||.|++||+.++.....+
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 899999874 78999999999999999999999999999999999999997 7889999999999999999998888777
Q ss_pred eCCCCCcEEEEEE-CCCCCEEEEEecCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577 430 TTPSSRQFVSLAS-DQSGEVICAGTLDSFEIFVWSMKTGR-LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507 (860)
Q Consensus 430 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 507 (860)
... ..+.++.+ +++|.++++|+.|+ .|++||+++++ .+..+.+|...|.++.|. ++.++++++.|++|++||+.
T Consensus 615 ~~~--~~v~~v~~~~~~g~~latgs~dg-~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 615 KTK--ANICCVQFPSESGRSLAFGSADH-KVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred ecC--CCeEEEEEeCCCCCEEEEEeCCC-eEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence 643 46788888 56799999999998 99999998765 567788999999999997 78899999999999999997
Q ss_pred CC------cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCC
Q 038577 508 EG------KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581 (860)
Q Consensus 508 ~~------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (860)
.. ..+..+.+|...+..++|+|++.+|++|+.||.|++|+.....++..+......... ......+.
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~-------~~~~~~~~ 763 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS-------GLEVDDAS 763 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc-------ccccCCCC
Confidence 43 345566789999999999999999999999999999998877655444321110000 00011234
Q ss_pred CcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 582 KCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 582 ~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
..|.+++|+|++.+|++|+.||.|++|++
T Consensus 764 ~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred cEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 56999999999999999999999999986
No 59
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.9e-31 Score=229.02 Aligned_cols=282 Identities=19% Similarity=0.266 Sum_probs=250.8
Q ss_pred ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
..+..++++|..+.|+-+|++.++++.|.+|++|+...+.+++++.+|...|..++.+.|...+++++.+ ..+.+||+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD-k~v~vwDV~ 89 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGD-KAVQVWDVN 89 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCC-ceEEEEEcc
Confidence 3455678899999999999999999999999999999999999999999999999999999999998877 999999999
Q ss_pred CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcE
Q 038577 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTV 415 (860)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 415 (860)
+|+..+++.+|.+.|+.++|+.+...+++|+.|.++++||.++ .++++.+......|.++... +..+++|+.||++
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtv 167 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTV 167 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence 9999999999999999999999999999999999999999875 46788888888999999886 4589999999999
Q ss_pred EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE--EEEEcCCCCEEE
Q 038577 416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH--GLVFSPTNATLA 493 (860)
Q Consensus 416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~--~l~~s~~~~~l~ 493 (860)
+.||++.++...... ..+++++.++++++..++++.++ .+++.|-.+|++++.++||...-. ..+++.....++
T Consensus 168 RtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~s-tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 168 RTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDS-TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred EEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccc-eeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 999999887655443 34789999999999999999999 999999999999999999986544 456777778999
Q ss_pred EEeCCCcEEEEEccCCcceeEEcccCCC-eEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 494 SSSWDKTVRLWNVFEGKGSVESFPHTHD-VLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 494 s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
+|++||.|++||+.....+..+..+... +.++.++|.-..++++... .+..|.
T Consensus 244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred eccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 9999999999999999877777777766 8999999988778777644 455664
No 60
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-30 Score=229.09 Aligned_cols=292 Identities=18% Similarity=0.287 Sum_probs=251.3
Q ss_pred ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc
Q 038577 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS 261 (860)
Q Consensus 182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (860)
+..+.||..+++.+.|+.+|. +|++++.|.+..+|-...++ +...+.
T Consensus 3 pi~l~GHERplTqiKyN~eGD-----LlFscaKD~~~~vw~s~nGe----------------------------rlGty~ 49 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGD-----LLFSCAKDSTPTVWYSLNGE----------------------------RLGTYD 49 (327)
T ss_pred ccccccCccccceEEecCCCc-----EEEEecCCCCceEEEecCCc----------------------------eeeeec
Confidence 466889999999999999999 99999999999999775543 245677
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc----CCcEEEEEcc
Q 038577 262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK----LGQLLVWEWR 337 (860)
Q Consensus 262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~----~g~i~v~d~~ 337 (860)
+|.+.|.|+..+-+.+.+++|+.|.++++||+++++++..++.. .++..+.|+++|+.++++..+ .+.|.++|++
T Consensus 50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~ 128 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR 128 (327)
T ss_pred CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence 99999999999999999999999999999999999999988765 489999999999999887653 3789999988
Q ss_pred -------CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577 338 -------SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-CFVTFTEHTNAVTALHFMANNHSLLSA 409 (860)
Q Consensus 338 -------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~ 409 (860)
..++..++..+...++.+-|.|-+++|++|..||.|.+||+.+|. .+.....|...|+.+.+++|..+++++
T Consensus 129 ~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 129 DDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred CChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEec
Confidence 455677788888999999999999999999999999999999984 455667899999999999999999999
Q ss_pred eCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCC------------ceEEEecCc
Q 038577 410 SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTG------------RLLDILSGH 476 (860)
Q Consensus 410 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~------------~~~~~~~~h 476 (860)
+.|.+-++||..+...++++.... ++.+.+++|-...++.|+... ..|.--+.+.| +.+..+++|
T Consensus 209 s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH 286 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH 286 (327)
T ss_pred ccCccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc
Confidence 999999999999999999988765 789999999888887765432 22333333333 345667899
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC
Q 038577 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG 509 (860)
Q Consensus 477 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 509 (860)
-++|++++|+|+|+..++|+.||.|++.-....
T Consensus 287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 999999999999999999999999999865443
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=246.53 Aligned_cols=284 Identities=20% Similarity=0.227 Sum_probs=248.5
Q ss_pred ccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee---------cCCceeEEEECCCCCEEEEE-eCCeEE
Q 038577 48 PVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR---------FKYPVNAILFSPNGKYIAVG-TGKLVQ 117 (860)
Q Consensus 48 ~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~---------~~~~v~~~~fspdg~~la~~-~~~~i~ 117 (860)
-+|..+-+.|..|||||+||++++.||-|.+||..+|+....++ +..+|.|+.||.|...||+| .||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 34667778999999999999999999999999999998776554 57889999999999999999 899999
Q ss_pred EEeCCCCCcccceeEEEEEee-ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEE
Q 038577 118 IWRSPGFKKEVFAFELIRTLA-DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCF 196 (860)
Q Consensus 118 iwd~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~ 196 (860)
||.+.+|. +++++. .|+..|+|+.||.|+..+++++.|.++++.-+.++ .....+.||...|+...
T Consensus 289 vWri~tG~-------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG------K~LKEfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 289 VWRIETGQ-------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG------KCLKEFRGHSSYVNEAT 355 (508)
T ss_pred EEEEecch-------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc------hhHHHhcCccccccceE
Confidence 99999998 467776 89999999999999999999999999999999999 77899999999999999
Q ss_pred EccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC-
Q 038577 197 FSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG- 275 (860)
Q Consensus 197 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 275 (860)
|++||. ++++++.||++++|+..+.++... ....+...+|.++..-|.
T Consensus 356 ft~dG~-----~iisaSsDgtvkvW~~KtteC~~T--------------------------fk~~~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 356 FTDDGH-----HIISASSDGTVKVWHGKTTECLST--------------------------FKPLGTDYPVNSVILLPKN 404 (508)
T ss_pred EcCCCC-----eEEEecCCccEEEecCcchhhhhh--------------------------ccCCCCcccceeEEEcCCC
Confidence 999999 999999999999999988765111 111223445667666664
Q ss_pred CCEEEEEEcCCeEEEEECCCceeEEEEeec---CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCe
Q 038577 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSIS---REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV 352 (860)
Q Consensus 276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v 352 (860)
-..++++...+++++.++ .|+.++.+... .+...+.+.+|.|.++.+.+.+ +.++.+...+|+....+..|...+
T Consensus 405 peh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED-~vlYCF~~~sG~LE~tl~VhEkdv 482 (508)
T KOG0275|consen 405 PEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED-GVLYCFSVLSGKLERTLPVHEKDV 482 (508)
T ss_pred CceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccC-cEEEEEEeecCceeeeeecccccc
Confidence 467889999999999999 67777777654 3467888999999999998876 999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 353 NCLAYSPDSQLLATGADDNKVKVWT 377 (860)
Q Consensus 353 ~~~~~s~~~~~l~~~~~dg~i~iwd 377 (860)
..++-+|..+.+|+-+.||.+++|.
T Consensus 483 IGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 483 IGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999995
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-32 Score=249.58 Aligned_cols=276 Identities=20% Similarity=0.383 Sum_probs=238.0
Q ss_pred cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577 92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~ 170 (860)
....|.|+.+. ...+++| .|++|+|||.++.. +...+.||++.|.|+.|. .+.+++|+.|.+|+|||+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~-------c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLE-------CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHH-------HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEec
Confidence 34678999984 5677788 99999999999876 578899999999999995 569999999999999999
Q ss_pred cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK 250 (860)
Q Consensus 171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (860)
+++ ....++.+|...|..+.|+.. ++++++.|.++.+||+....
T Consensus 265 ~tg------e~l~tlihHceaVLhlrf~ng-------~mvtcSkDrsiaVWdm~sps----------------------- 308 (499)
T KOG0281|consen 265 NTG------EPLNTLIHHCEAVLHLRFSNG-------YMVTCSKDRSIAVWDMASPT----------------------- 308 (499)
T ss_pred cCC------chhhHHhhhcceeEEEEEeCC-------EEEEecCCceeEEEeccCch-----------------------
Confidence 999 778999999999999999865 99999999999999998732
Q ss_pred eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCc
Q 038577 251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ 330 (860)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~ 330 (860)
.+.....+.+|...|..+.|+. +++++++.|.+|++|++.+++.++++.+|...|.|+.+. |+.+++++ .|.+
T Consensus 309 --~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS-SDnt 381 (499)
T KOG0281|consen 309 --DITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS-SDNT 381 (499)
T ss_pred --HHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC-CCce
Confidence 2233567788999999999865 499999999999999999999999999999988888764 45555554 4599
Q ss_pred EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------eEEEeecCCCceEEEEEee
Q 038577 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF---------CFVTFTEHTNAVTALHFMA 401 (860)
Q Consensus 331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~i~~~~ 401 (860)
|++||++.|.++..+++|..-|.|+.|. .+.+++|+.||+|++||+..+. ++..+..|++.|..+.|.
T Consensus 382 IRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD- 458 (499)
T KOG0281|consen 382 IRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD- 458 (499)
T ss_pred EEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-
Confidence 9999999999999999999999999995 6789999999999999998653 345566799999999995
Q ss_pred CCCEEEEEeCCCcEEEEEccccce
Q 038577 402 NNHSLLSASLDGTVRAWDLFRYRN 425 (860)
Q Consensus 402 ~~~~l~s~~~dg~i~~wd~~~~~~ 425 (860)
...+++++.|.+|-+||+.++..
T Consensus 459 -~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 459 -EFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred -ceEEEeccCCCeEEEEEcCCCCc
Confidence 55899999999999999977643
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.5e-29 Score=290.13 Aligned_cols=284 Identities=19% Similarity=0.269 Sum_probs=236.6
Q ss_pred cccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc----e----eEEEEeecCceeEEEEEeeC-CCEEEEEEccCC
Q 038577 259 DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF----V----CIHLLSISREKITTAVFNEL-GNWLVFGCAKLG 329 (860)
Q Consensus 259 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~----~----~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~g 329 (860)
.+..|...|.+++|+|+++++++|+.|+.|++|+.... . ....+. +...+.+++|++. +..+++++. ||
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~-Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNF-EG 555 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeC-CC
Confidence 34558889999999999999999999999999997532 1 112222 3457889999875 566666555 59
Q ss_pred cEEEEEccCceEEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEe-eCCCEEE
Q 038577 330 QLLVWEWRSESYILKQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM-ANNHSLL 407 (860)
Q Consensus 330 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~-~~~~~l~ 407 (860)
.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.++..+..+..+ ..+.++.|+ +++..++
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEE
Confidence 999999999999999999999999999997 7889999999999999999999888888754 689999995 5689999
Q ss_pred EEeCCCcEEEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC------CceEEEecCcccCe
Q 038577 408 SASLDGTVRAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT------GRLLDILSGHEGPV 480 (860)
Q Consensus 408 s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~------~~~~~~~~~h~~~v 480 (860)
+|+.||.|++||+++.+. ...+ ..+...+.++.|. ++.++++++.|+ .|++||+.. .+.+..+.+|...+
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~-~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDN-TLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCC-EEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 999999999999987653 3333 3455678899997 788999999998 999999974 35778899999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE-------------cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES-------------FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
..++|+|++.+|++|+.|+.|++|+.......... ..+...|.+++|+|++..|++|+.||.|+||+
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 99999999999999999999999997655322111 22455699999999999999999999999998
Q ss_pred C
Q 038577 548 P 548 (860)
Q Consensus 548 ~ 548 (860)
+
T Consensus 792 ~ 792 (793)
T PLN00181 792 M 792 (793)
T ss_pred c
Confidence 6
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.9e-32 Score=247.71 Aligned_cols=281 Identities=22% Similarity=0.341 Sum_probs=232.9
Q ss_pred ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 386 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 386 (860)
..|.|+.+ |...++++.. |.+|++||..+..+...+.+|.+.|.|+.|. .+.+++|+.|.+|++||.++++++.+
T Consensus 198 kgVYClQY--DD~kiVSGlr-DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLR-DNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred CceEEEEe--cchhhhcccc-cCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhH
Confidence 45666655 3455665554 5999999999999999999999999999985 55999999999999999999999999
Q ss_pred eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee--eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF--RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM 464 (860)
Q Consensus 387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~ 464 (860)
+..|...|..+.|+.. ++++++.|.++.+||+.....+ +.....+...+..+.|+ .+++++++.|. +|++|++
T Consensus 273 lihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDR-TikvW~~ 347 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDR-TIKVWST 347 (499)
T ss_pred HhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCc-eEEEEec
Confidence 9999999999999754 8999999999999999765432 22334455566766665 45999999998 9999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 038577 465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIH 544 (860)
Q Consensus 465 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 544 (860)
.+++.++++.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..+.+|..-|.++.| |.+.+++|+.||+|+
T Consensus 348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkik 423 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIK 423 (499)
T ss_pred cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccceEE
Confidence 999999999999999999998 6999999999999999999999999999999999999999 567899999999999
Q ss_pred EEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCce
Q 038577 545 FWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQV 614 (860)
Q Consensus 545 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~ 614 (860)
+||+.++.......+. .-......+.+.|..+.| |...+++++.|.+|.|||+.++.
T Consensus 424 vWdl~aaldpra~~~~-----------~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 424 VWDLQAALDPRAPAST-----------LCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred EEecccccCCcccccc-----------hHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCC
Confidence 9999876533221110 001112234456888998 77889999999999999998774
No 65
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=1.1e-31 Score=256.38 Aligned_cols=287 Identities=15% Similarity=0.216 Sum_probs=244.5
Q ss_pred EEeeccCCccCeeEEEEcC-CCCEEEEEcCCCcEEEEEccc-CeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEE
Q 038577 44 TVTLPVESSSNICRIAVSP-DGTFLLTVDENQRCHFINLHC-HVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIW 119 (860)
Q Consensus 44 ~~~~~~~h~~~v~~va~sp-dg~~la~~~~d~~i~vwd~~~-~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iw 119 (860)
....+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++++. |..+|.+++|+++|..+.++ .|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 3566779999999999999 899999999999999999976 89999988 99999999999999877776 89999999
Q ss_pred eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEc
Q 038577 120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFS 198 (860)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~ 198 (860)
|+++|+. ...+. -...++|+.|.||+ +.+++|+.|+.|+.||+.++ ........|-+.|..+.|-
T Consensus 286 DtETG~~-------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~------kvvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 286 DTETGQV-------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG------KVVQEYDRHLGAILDITFV 351 (503)
T ss_pred ccccceE-------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch------HHHHHHHhhhhheeeeEEc
Confidence 9999983 44443 24457999999999 88999999999999999999 6778888999999999999
Q ss_pred cCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE
Q 038577 199 VDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM 278 (860)
Q Consensus 199 ~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 278 (860)
+++. ++++.++|+++++|+...... .+...........|+..+|++++
T Consensus 352 ~~g~-----rFissSDdks~riWe~~~~v~---------------------------ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 352 DEGR-----RFISSSDDKSVRIWENRIPVP---------------------------IKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred cCCc-----eEeeeccCccEEEEEcCCCcc---------------------------chhhcchhhccCcceecCCCCCe
Confidence 9999 999999999999999887533 12222233446788999999999
Q ss_pred EEEEEcCCeEEEEECCCcee---EEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeE
Q 038577 279 VVVGFSNGVFGLYQMPDFVC---IHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVN 353 (860)
Q Consensus 279 l~~~~~~g~i~~~~~~~~~~---~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~ 353 (860)
++.-+.++.|.++.+...-. ...+.+|. +--..+.|||||.+|+++.++ |.+.+||+++-+.+..+..|..++.
T Consensus 400 ~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-G~v~~wdwkt~kl~~~lkah~~~ci 478 (503)
T KOG0282|consen 400 FAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-GKVNFWDWKTTKLVSKLKAHDQPCI 478 (503)
T ss_pred ehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCC-ccEEEeechhhhhhhccccCCcceE
Confidence 99999999999998753221 22334443 345678999999999999887 9999999999999999999999999
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEE
Q 038577 354 CLAYSPD-SQLLATGADDNKVKVWT 377 (860)
Q Consensus 354 ~~~~s~~-~~~l~~~~~dg~i~iwd 377 (860)
.+.|+|. ...+|+++.||.|++|+
T Consensus 479 ~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 479 GVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEecCCCcceeEecccCceeEecC
Confidence 9999996 45899999999999996
No 66
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-29 Score=225.49 Aligned_cols=290 Identities=17% Similarity=0.270 Sum_probs=245.6
Q ss_pred eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC--CCcEE
Q 038577 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD--DNKVK 374 (860)
Q Consensus 297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~ 374 (860)
+..+.++.....|.++.|+++|..+++++.+ ..+++||..+++.+..+..+...+..++|......++.++. |.+|+
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~d-Dsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSED-DSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCC-CeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3344555567799999999999999996554 89999999999999999888888999999888777777776 88999
Q ss_pred EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577 375 VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454 (860)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (860)
..++.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+..... ..++++|.|-++|++..
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---pi~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---PIAAFDPEGLIFALANG 160 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC---cceeECCCCcEEEEecC
Confidence 999999999999999999999999999999999999999999999998888777766544 57899999999999999
Q ss_pred CCCeEEEEECCCC--ceEEEec---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC---eEEEE
Q 038577 455 DSFEIFVWSMKTG--RLLDILS---GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD---VLTVV 526 (860)
Q Consensus 455 ~~~~i~v~d~~~~--~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~ 526 (860)
.+ .|++||++.- .+...+. +...+.+.+.|||||+++..+...+.+++.|.-+|.....+..+... -...+
T Consensus 161 ~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 161 SE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 88 9999999863 3444443 34678899999999999999999999999999999866655544333 26789
Q ss_pred EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEE
Q 038577 527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYIC 606 (860)
Q Consensus 527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~ 606 (860)
|+||++++++|+.||+|++|++++|..+..+.+... .++.++.|.|.-.++++++ ..+.
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~-------------------~~~~~~~fnP~~~mf~sa~--s~l~ 298 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNG-------------------GPVSCVRFNPRYAMFVSAS--SNLV 298 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCC-------------------CCccccccCCceeeeeecC--ceEE
Confidence 999999999999999999999999999999988632 3588999998877777655 5577
Q ss_pred EEECCC
Q 038577 607 MYDVAD 612 (860)
Q Consensus 607 vwd~~~ 612 (860)
+|=...
T Consensus 299 fw~p~~ 304 (311)
T KOG1446|consen 299 FWLPDE 304 (311)
T ss_pred EEeccc
Confidence 775543
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=7.5e-30 Score=236.24 Aligned_cols=278 Identities=23% Similarity=0.371 Sum_probs=239.3
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCE---EEEEEccCCcEEEEEccC
Q 038577 262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNW---LVFGCAKLGQLLVWEWRS 338 (860)
Q Consensus 262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~---l~~~~~~~g~i~v~d~~~ 338 (860)
.|...|.++... ++.+++|+.||.+++|+. .|+....+.+|.+++.+++|...... +++++ .|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-MDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEec-CCceEEEEEecC
Confidence 356677777766 679999999999999999 78999999999999998888654433 55554 559999999987
Q ss_pred ceEEEE----ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-------------------------CCeeEEEeec
Q 038577 339 ESYILK----QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS-------------------------SGFCFVTFTE 389 (860)
Q Consensus 339 ~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-------------------------~~~~~~~~~~ 389 (860)
+..... -.+|...|.++...++|..+++|+.|..+.+|+.. ++.++.++.+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 754332 25999999999999999999999999999999932 1245667889
Q ss_pred CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-
Q 038577 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR- 468 (860)
Q Consensus 390 ~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~- 468 (860)
|..+|.++.|++ ...+++++.|.+|+.||+.++.....+..+. .+.++..+|..++|++|+.|. .+++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~~~~~~Ll~~gssdr-~irl~DPR~~~g 334 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISYSPLSKLLASGSSDR-HIRLWDPRTGDG 334 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc--ceeEeecccccceeeecCCCC-ceeecCCCCCCC
Confidence 999999999988 5689999999999999999999888877654 689999999999999999999 99999998753
Q ss_pred --eEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEEccCCc-ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 038577 469 --LLDILSGHEGPVHGLVFSPTNA-TLASSSWDKTVRLWNVFEGK-GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIH 544 (860)
Q Consensus 469 --~~~~~~~h~~~v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 544 (860)
....+.+|.+.|.++.|+|... .|++++.|+++++||+++.+ ++..+.+|...|.++.|. ++..+++|+.|.+|+
T Consensus 335 s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 335 SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 4578899999999999999765 58899999999999999887 788888999999999998 677999999999999
Q ss_pred EEeC
Q 038577 545 FWDP 548 (860)
Q Consensus 545 iwd~ 548 (860)
|+.-
T Consensus 414 i~~~ 417 (423)
T KOG0313|consen 414 IFKG 417 (423)
T ss_pred Eecc
Confidence 9864
No 68
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=233.11 Aligned_cols=302 Identities=22% Similarity=0.349 Sum_probs=248.4
Q ss_pred EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc------------cCcccccceEeecCCCcEEEEEEccCC
Q 038577 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL------------KGIHTNKPFLLLGHRDSVVGCFFSVDK 201 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~------------~~~~~~~~~~~~~h~~~i~~~~~~~~~ 201 (860)
...+..|++++.+.+|||||.++|+|+.|..|+|.|++... .........++..|.+.|+.+.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 35678899999999999999999999999999999987321 111112456788899999999999999
Q ss_pred CCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577 202 KTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV 281 (860)
Q Consensus 202 ~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 281 (860)
. .|++++.|++++++|...... .+.........+|.++.|+|.|+++++
T Consensus 185 ~-----ILiS~srD~tvKlFDfsK~sa--------------------------KrA~K~~qd~~~vrsiSfHPsGefllv 233 (430)
T KOG0640|consen 185 T-----ILISGSRDNTVKLFDFSKTSA--------------------------KRAFKVFQDTEPVRSISFHPSGEFLLV 233 (430)
T ss_pred h-----eEEeccCCCeEEEEecccHHH--------------------------HHHHHHhhccceeeeEeecCCCceEEE
Confidence 9 999999999999999876322 011122234568999999999999999
Q ss_pred EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577 282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS 361 (860)
Q Consensus 282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 361 (860)
|+....+++||+.+.++...-. | + ..|.+.|+++.+++.|
T Consensus 234 gTdHp~~rlYdv~T~Qcfvsan------------P----------d------------------~qht~ai~~V~Ys~t~ 273 (430)
T KOG0640|consen 234 GTDHPTLRLYDVNTYQCFVSAN------------P----------D------------------DQHTGAITQVRYSSTG 273 (430)
T ss_pred ecCCCceeEEeccceeEeeecC------------c----------c------------------cccccceeEEEecCCc
Confidence 9999999999997665432111 0 1 3688999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeec-CC-CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCC----
Q 038577 362 QLLATGADDNKVKVWTVSSGFCFVTFTE-HT-NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSR---- 435 (860)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~---- 435 (860)
++.++|+.||.|++||--+++++.++.. |. ..|.+..|..+++++++.|.|..+++|.+.+++++..+......
T Consensus 274 ~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~ 353 (430)
T KOG0640|consen 274 SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK 353 (430)
T ss_pred cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh
Confidence 9999999999999999999999988753 44 47899999999999999999999999999999999988765321
Q ss_pred cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577 436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506 (860)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 506 (860)
.-+...|+....+++.-....+.+.-||.+++..+..+ -+|.+.+..+.-||.+.-+.+|+.|..+++|--
T Consensus 354 ~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 354 HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 22445677888888887777678999999988766544 479999999999999999999999999999964
No 69
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=7.3e-30 Score=224.87 Aligned_cols=295 Identities=18% Similarity=0.252 Sum_probs=245.2
Q ss_pred EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577 344 KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY 423 (860)
Q Consensus 344 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~ 423 (860)
.+++|..+++.+.++.+|.+|.+++.|.+..+|-..+|+.+.++.+|.+.|+++..+.+.+.+++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 35789999999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECC-------CCceEEEecCcccCeEEEEEcCCCCEE
Q 038577 424 RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMK-------TGRLLDILSGHEGPVHGLVFSPTNATL 492 (860)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~-------~~~~~~~~~~h~~~v~~l~~s~~~~~l 492 (860)
+++..+..+. .+..+.|+++|+++++...+. +.|.++|++ ..++...+..+...++...|.|-+++|
T Consensus 85 k~la~~k~~~--~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 KQLATWKTNS--PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred cEEEEeecCC--eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999888765 689999999999998876542 379999998 456788888899999999999999999
Q ss_pred EEEeCCCcEEEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577 493 ASSSWDKTVRLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD 571 (860)
Q Consensus 493 ~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 571 (860)
++|..||.|.+||++++...... ..|...|+.+.++||..++++++.|.+-++||..+-+.+.++....+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P--------- 233 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP--------- 233 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc---------
Confidence 99999999999999998766555 46999999999999999999999999999999999999999988764
Q ss_pred cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEE--EECCCceEEEEEeecccccccceeeeccCCCCCCCCCCcccc
Q 038577 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICM--YDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLID 649 (860)
Q Consensus 572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (860)
+++.+++|-..+++.|+.....-| =+.+.|+.-.+|
T Consensus 234 ------------vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArF------------------------------ 271 (327)
T KOG0643|consen 234 ------------VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARF------------------------------ 271 (327)
T ss_pred ------------ccceecccccceEEecCCceeeeeeeecccccchhhhH------------------------------
Confidence 899999999988888764321111 011111100000
Q ss_pred CCCCCccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEE-EE
Q 038577 650 DDNSDTEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVL-VY 708 (860)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~-i~ 708 (860)
....+...+.+...|-+|+.+++|+|||+.+++++.||.+ +.
T Consensus 272 -----------------yh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 272 -----------------YHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred -----------------HHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 0000111122345667799999999999999999999954 53
No 70
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.1e-29 Score=221.28 Aligned_cols=277 Identities=18% Similarity=0.255 Sum_probs=244.8
Q ss_pred EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCcccCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 038577 300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYFDVNCLAYSPD-SQLLATGADDNKVKVW 376 (860)
Q Consensus 300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iw 376 (860)
+.++.+..++.+++|+.+|..++.++.+ +++.+|++...+..... .+|.+.|..++|+|. ...+++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~d-ktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFD-KTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccC-CceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 4456677899999999999999999887 99999999887555443 678889999999884 5689999999999999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (860)
|.+++++........+.+ -+.|+|+|.+++.++.|..|.+.|.++.+.....+... .+..++++.++.+++.....|
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~--e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF--EVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc--eeeeeeecCCCCEEEEecCCc
Confidence 999999999887655554 57899999999999999999999999888776655443 567888888888888777767
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE
Q 038577 457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC 536 (860)
Q Consensus 457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 536 (860)
.|.|.....-+++..+++|.....||.|+|+|+++|+|+.|..+.+||+...-+...+..+.-+|+.+.||.||++||+
T Consensus 170 -~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS 248 (313)
T KOG1407|consen 170 -CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS 248 (313)
T ss_pred -eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec
Confidence 9999999999999999999999999999999999999999999999999998888888899999999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577 537 STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS 602 (860)
Q Consensus 537 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 602 (860)
|++|..|-|=++++|..+..++.... ...++|.|...+|+.+++|
T Consensus 249 aSEDh~IDIA~vetGd~~~eI~~~~~---------------------t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWEIPCEGP---------------------TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCccceEEeEecccCCeEEEeeccCC---------------------ceeEEecCCCceeeEEecC
Confidence 99999999999999999999987654 7999999999999987664
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=9.5e-31 Score=227.89 Aligned_cols=290 Identities=18% Similarity=0.258 Sum_probs=254.5
Q ss_pred EEEeecCceeEEEEEee---CCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 300 HLLSISREKITTAVFNE---LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376 (860)
Q Consensus 300 ~~~~~~~~~i~~~~~s~---~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 376 (860)
.+-.+|..+|..++|+| +|-+|++++.+ |.-.+-+-+++..+.++.+|.+.|.+...+.+...-++++.|=+-++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd-~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKD-GKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccC-CCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 44567888999999984 77777777665 888888889999999999999999999999999899999999999999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (860)
|.-+|..+..+. |..-|.+++|+.|.++|++|+.+.-+++||++..+....-...+...|..+.|....+.++++..++
T Consensus 87 ~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 87 DAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 999999998885 8999999999999999999999999999999887765555556677888888988888888887777
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE
Q 038577 457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC 536 (860)
Q Consensus 457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 536 (860)
.|++||.++++.++.+. ...+|+++.++++|++|.++ ..+.|.+||..+-. +.+....+..|.+..++|+...+++
T Consensus 166 -tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~-~lKs~k~P~nV~SASL~P~k~~fVa 241 (334)
T KOG0278|consen 166 -TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFG-LLKSYKMPCNVESASLHPKKEFFVA 241 (334)
T ss_pred -ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEecccccc-ceeeccCccccccccccCCCceEEe
Confidence 99999999999999987 57789999999999877665 46779999998876 4555567788999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeEEE-ecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceE
Q 038577 537 STLDGQIHFWDPLNGELMYTI-EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVL 615 (860)
Q Consensus 537 ~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~ 615 (860)
|+.|+.++.||..+|+.+..+ ++|.. +|.++.|||||..-++|++||+|++|-+..++.
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~g--------------------pVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFG--------------------PVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCC--------------------ceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 999999999999999998885 66664 699999999999999999999999999877653
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=227.08 Aligned_cols=290 Identities=19% Similarity=0.221 Sum_probs=258.8
Q ss_pred ccccCCCCceEEEEecC---CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577 258 DDFSQAPSKVTACDYHR---GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVW 334 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~---~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~ 334 (860)
....+|..+|..++|+| +|-+|++++.||.-.+-+-+++.-+.++.+|.+.|.+...+.+...-++++.+ -+-++|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaad-ftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAAD-FTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhccc-chhhhh
Confidence 34467888999999875 78889999999999999999999999999999999999999887777776665 889999
Q ss_pred EccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577 335 EWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 335 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
|.-++..+..+ .|..-|.+++|+.|.++|++|+.+.-+++||++.. .+..++.+|.+.|..+.|+...+.++++..|+
T Consensus 87 ~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~ 165 (334)
T KOG0278|consen 87 DAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK 165 (334)
T ss_pred hhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence 99999888776 47778999999999999999999999999999865 45678889999999999999999999999999
Q ss_pred cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA 493 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 493 (860)
+||+||.++++.++.+..++ .+.++.++++|+++.++... .|.+||..+..+++.++ -.-.|.+..++|+...++
T Consensus 166 tVRLWD~rTgt~v~sL~~~s--~VtSlEvs~dG~ilTia~gs--sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 166 TVRLWDHRTGTEVQSLEFNS--PVTSLEVSQDGRILTIAYGS--SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFV 240 (334)
T ss_pred ceEEEEeccCcEEEEEecCC--CCcceeeccCCCEEEEecCc--eeEEeccccccceeecc-CccccccccccCCCceEE
Confidence 99999999999999998776 68999999999999887655 79999999999988877 456789999999999999
Q ss_pred EEeCCCcEEEEEccCCcceeEE-cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577 494 SSSWDKTVRLWNVFEGKGSVES-FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM 554 (860)
Q Consensus 494 s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 554 (860)
+|+.|..++.||..+++.+... .+|.++|.++.|+|||...++|+.||+|++|....++.-
T Consensus 241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999977774 789999999999999999999999999999998766543
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.5e-31 Score=237.89 Aligned_cols=291 Identities=21% Similarity=0.351 Sum_probs=256.9
Q ss_pred cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCc
Q 038577 187 GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK 266 (860)
Q Consensus 187 ~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (860)
+....+.+..|+||++ +|++++.||.|.+|+..++...++ ...+....+..+...
T Consensus 211 g~KSh~EcA~FSPDgq-----yLvsgSvDGFiEVWny~~GKlrKD--------------------LkYQAqd~fMMmd~a 265 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQ-----YLVSGSVDGFIEVWNYTTGKLRKD--------------------LKYQAQDNFMMMDDA 265 (508)
T ss_pred ccccchhheeeCCCCc-----eEeeccccceeeeehhccchhhhh--------------------hhhhhhcceeecccc
Confidence 5566788899999999 999999999999999988755222 122233445567789
Q ss_pred eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe-ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577 267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345 (860)
Q Consensus 267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~ 345 (860)
|.|+.|+.|..++++|+.||.|.+|.+.+|.+++.+. .|...|+++.|+.|+..+++++.+ .++++--+++|+.+..+
T Consensus 266 Vlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 266 VLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKCLKEF 344 (508)
T ss_pred eEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc-ceEEEeccccchhHHHh
Confidence 9999999999999999999999999999999999887 788899999999999999998776 99999999999999999
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC--CCceEEEEEeeCC-CEEEEEeCCCcEEEEEccc
Q 038577 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH--TNAVTALHFMANN-HSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~ 422 (860)
++|...|+...|+++|..+++++.||+|++|+..+.+++.+++.. .-+|..+...|.+ ..++.+...+++.+.++ .
T Consensus 345 rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-q 423 (508)
T KOG0275|consen 345 RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-Q 423 (508)
T ss_pred cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-c
Confidence 999999999999999999999999999999999999999988753 4478888877754 67889999999999987 5
Q ss_pred cceeeEeeCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 423 YRNFRTFTTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT 500 (860)
Q Consensus 423 ~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 500 (860)
++.++.+.... .....+.+.+|.|.++++.+.|+ .++.|...+|++.+.+.-|...|-.++-+|..+.+|+-+.||.
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~-vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG-VLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGL 502 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc-EEEEEEeecCceeeeeecccccccccccCcccchhhhhcccch
Confidence 66677766443 44678889999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEEE
Q 038577 501 VRLWN 505 (860)
Q Consensus 501 i~iwd 505 (860)
+++|.
T Consensus 503 lKLWk 507 (508)
T KOG0275|consen 503 LKLWK 507 (508)
T ss_pred hhhcC
Confidence 99995
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-28 Score=218.92 Aligned_cols=288 Identities=18% Similarity=0.268 Sum_probs=248.3
Q ss_pred ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc-cCCcEEEEEc
Q 038577 258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQLLVWEW 336 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~g~i~v~d~ 336 (860)
..+......|.++.|+++|..+++++.|..+++||..+++...++..+...+..++|......++.++. .|.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 334456778999999999999999999999999999999999999999999999999987777776655 3589999999
Q ss_pred cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577 337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416 (860)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 416 (860)
.+.+.++.+.+|...|.+++.+|-+..+++++.|++|++||++..++...+.... -..++|.|.|-+++++.....|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEE
Confidence 9999999999999999999999999999999999999999999888877775433 34578999999999888888999
Q ss_pred EEEcccc--ceeeEeeC--CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCe---EEEEEcCCC
Q 038577 417 AWDLFRY--RNFRTFTT--PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPV---HGLVFSPTN 489 (860)
Q Consensus 417 ~wd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v---~~l~~s~~~ 489 (860)
+||++.. .+...+.. +...+...+.|||||+++++++..+ .+++.|.-+|.....+.++...- ...+|+||+
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 9999875 33444433 4456789999999999999999998 99999999999998888775443 577899999
Q ss_pred CEEEEEeCCCcEEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 490 ATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 490 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
+++.+|+.||+|.+|+++++.....+.+ +..++.++.|+|.-.+++++ +..+.+|=...
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 9999999999999999999998888877 78999999999987777766 56688886543
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.2e-29 Score=218.83 Aligned_cols=281 Identities=17% Similarity=0.242 Sum_probs=242.7
Q ss_pred EEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC
Q 038577 135 RTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR 214 (860)
Q Consensus 135 ~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~ 214 (860)
+.+.+|...|.+++|+.+|..|++|+.|+++.+|+++.. .. .......+|.+.|..++|.|.... .+++++.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~---~~~~~~~gh~~svdql~w~~~~~d----~~atas~ 85 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RF---RKELVYRGHTDSVDQLCWDPKHPD----LFATASG 85 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hh---hhhhcccCCCcchhhheeCCCCCc----ceEEecC
Confidence 456789999999999999999999999999999999877 22 345567899999999999887665 9999999
Q ss_pred CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577 215 DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP 294 (860)
Q Consensus 215 dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~ 294 (860)
|.+|++||...+.+.. .. .....=.-+.|+|+|++++++..|..|...|..
T Consensus 86 dk~ir~wd~r~~k~~~----------------------------~i-~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTA----------------------------RI-ETKGENINITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred CceEEEEEeccCcEEE----------------------------Ee-eccCcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence 9999999998865411 01 112233467899999999999999999999998
Q ss_pred CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577 295 DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVK 374 (860)
Q Consensus 295 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 374 (860)
+.+.....+.. ..+..++|+-++..++...+. |.|.|.....-+.+..++.|.....|+.|+|+|+++|+|+.|..+.
T Consensus 137 ~~~~~~~~~~~-~e~ne~~w~~~nd~Fflt~Gl-G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvS 214 (313)
T KOG1407|consen 137 TYKIVNEEQFK-FEVNEISWNNSNDLFFLTNGL-GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVS 214 (313)
T ss_pred ccceeehhccc-ceeeeeeecCCCCEEEEecCC-ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceee
Confidence 87776655443 367788898777777776665 9999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577 375 VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454 (860)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (860)
+||++.--+++.+..+.-+|..+.|+.+|++|++++.|..|-|=++.++..+..++... +...++|+|...+||.++.
T Consensus 215 LWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~--~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 215 LWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG--PTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred ccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC--CceeEEecCCCceeeEEec
Confidence 99999999999999999999999999999999999999999999999999888776554 5689999999999999887
Q ss_pred CC
Q 038577 455 DS 456 (860)
Q Consensus 455 ~~ 456 (860)
|.
T Consensus 293 dk 294 (313)
T KOG1407|consen 293 DK 294 (313)
T ss_pred CC
Confidence 65
No 76
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-27 Score=229.44 Aligned_cols=278 Identities=19% Similarity=0.315 Sum_probs=231.7
Q ss_pred ccCeEEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577 349 YFDVNCLAYSPDSQL-LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 427 (860)
...|.+++|+|...+ +|+.+. -.+.+|+..+......+......+.++.|..||+.+++|+..|.|++||+.+...++
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR 104 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR 104 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence 456999999996543 444433 589999998888888888888999999999999999999999999999966644445
Q ss_pred EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEc
Q 038577 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNV 506 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~ 506 (860)
.+. .+..++....|+|+++.+++.+.|+..+++||+.+......+.+|...|.+.+|+|.. ..++|||+||.|++||+
T Consensus 105 ~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 105 QLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 444 4455889999999888887777777699999999998877899999999999999964 57899999999999999
Q ss_pred cCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce-eEEEecccccCCCccccccccccccCCCCcEE
Q 038577 507 FEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL-MYTIEGRRDISGGRLMTDRRSAANSSSGKCFT 585 (860)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 585 (860)
+..........|..+|.++.+-|.|..+++++. ..|+|||+.+|.. +..+..|. +.|+
T Consensus 184 R~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~--------------------KtVT 242 (487)
T KOG0310|consen 184 RSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHN--------------------KTVT 242 (487)
T ss_pred ccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhccc--------------------ceEE
Confidence 988656666789999999999999999999974 4699999986654 44444354 3599
Q ss_pred EEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccC
Q 038577 586 TLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRG 665 (860)
Q Consensus 586 ~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (860)
|+++..+++.|++++-|+.|++||+.+-+.+..+..
T Consensus 243 cL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-------------------------------------------- 278 (487)
T KOG0310|consen 243 CLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-------------------------------------------- 278 (487)
T ss_pred EEEeecCCceEeecccccceEEEEccceEEEEeeec--------------------------------------------
Confidence 999999999999999999999999888777654431
Q ss_pred ccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEEEEe
Q 038577 666 KLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVLVYS 709 (860)
Q Consensus 666 ~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~i~~ 709 (860)
..|+.+++.|||++.+++|-++|.....
T Consensus 279 ----------------~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 279 ----------------PGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ----------------ccceeeEEecCCCceEEEecccceeeee
Confidence 2378999999999999999999987543
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-28 Score=225.79 Aligned_cols=315 Identities=16% Similarity=0.219 Sum_probs=245.9
Q ss_pred ccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC---CeEE
Q 038577 82 HCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS---NYLL 157 (860)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~---~~l~ 157 (860)
...+.+..+.|...|.++... +++|.+| .||.+++||..+.. ...+.||.++|.+++|--.. ..++
T Consensus 94 ~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~--------~~~~~Ght~~ik~v~~v~~n~~~~~fv 163 (423)
T KOG0313|consen 94 TAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS--------IKTIVGHTGPIKSVAWVIKNSSSCLFV 163 (423)
T ss_pred CCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEecCCce--------EEEEecCCcceeeeEEEecCCccceEE
Confidence 345566666688889998888 6788888 89999999998764 68899999999988884332 4699
Q ss_pred EeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCC
Q 038577 158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDS 237 (860)
Q Consensus 158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~ 237 (860)
+++.|.++++|..+.+.... .....-.||...|.++...+++. ++++++.|.++.+|+..............
T Consensus 164 sas~Dqtl~Lw~~~~~~~~~--~~~~~~~GHk~~V~sVsv~~sgt-----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~- 235 (423)
T KOG0313|consen 164 SASMDQTLRLWKWNVGENKV--KALKVCRGHKRSVDSVSVDSSGT-----RFCSGSWDTMLKIWSVETDEEDELESSSN- 235 (423)
T ss_pred EecCCceEEEEEecCchhhh--hHHhHhcccccceeEEEecCCCC-----eEEeecccceeeecccCCCccccccccch-
Confidence 99999999999998772111 12233449999999999999999 99999999999999943322211111000
Q ss_pred CCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC
Q 038577 238 EPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL 317 (860)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 317 (860)
............-.......+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+... ..+.++..+|.
T Consensus 236 --~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~ 311 (423)
T KOG0313|consen 236 --RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPL 311 (423)
T ss_pred --hhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccc
Confidence 00000000000001112455778999999999998 678999999999999999999988877655 48999999998
Q ss_pred CCEEEEEEccCCcEEEEEccCce---EEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-eEEEeecCCC
Q 038577 318 GNWLVFGCAKLGQLLVWEWRSES---YILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGF-CFVTFTEHTN 392 (860)
Q Consensus 318 ~~~l~~~~~~~g~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~ 392 (860)
.+.+++++++ ..+++||.+++. ....+.+|...|.++.|+|.. .+|++|+.|+++++||+++.+ ++..+.+|..
T Consensus 312 ~~Ll~~gssd-r~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D 390 (423)
T KOG0313|consen 312 SKLLASGSSD-RHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND 390 (423)
T ss_pred cceeeecCCC-CceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc
Confidence 8888888776 999999998763 456678999999999999965 467889999999999999877 8999999999
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 393 AVTALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 393 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
.|.++.|.. +..+++||.|.+++++.-
T Consensus 391 Kvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 391 KVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred eEEEEeccC-CceEEeccCcceEEEecc
Confidence 999999974 558999999999999864
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-28 Score=246.37 Aligned_cols=275 Identities=18% Similarity=0.240 Sum_probs=229.9
Q ss_pred EEEeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCc
Q 038577 18 AVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYP 95 (860)
Q Consensus 18 ~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~ 95 (860)
+.+|..+.||++.+..|++|+..+++...+...+...|+++.|+++|.+||+|..+|.|.|||..+.+.++.+. |...
T Consensus 183 ldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r 262 (484)
T KOG0305|consen 183 LDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASR 262 (484)
T ss_pred hhcccCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCce
Confidence 55665668999999999999999999776665558999999999999999999999999999999999888887 6889
Q ss_pred eeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc
Q 038577 96 VNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL 174 (860)
Q Consensus 96 v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~ 174 (860)
|.+++|. +..+.+| .++.|..+|+...+.. ...+.+|...|..++|++|++++|+|+.|+.+.|||....
T Consensus 263 vg~laW~--~~~lssGsr~~~I~~~dvR~~~~~------~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~- 333 (484)
T KOG0305|consen 263 VGSLAWN--SSVLSSGSRDGKILNHDVRISQHV------VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP- 333 (484)
T ss_pred eEEEecc--CceEEEecCCCcEEEEEEecchhh------hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-
Confidence 9999998 6677777 8999999999987752 3348899999999999999999999999999999999666
Q ss_pred cCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc--CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeE
Q 038577 175 KGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA--RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW 252 (860)
Q Consensus 175 ~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~--~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (860)
.....+..|.+.|..++|+|-... .|++|+ .|+.|++|+..
T Consensus 334 -----~p~~~~~~H~aAVKA~awcP~q~~----lLAsGGGs~D~~i~fwn~~---------------------------- 376 (484)
T KOG0305|consen 334 -----EPKFTFTEHTAAVKALAWCPWQSG----LLATGGGSADRCIKFWNTN---------------------------- 376 (484)
T ss_pred -----cccEEEeccceeeeEeeeCCCccC----ceEEcCCCcccEEEEEEcC----------------------------
Confidence 678899999999999999997663 666665 24555555544
Q ss_pred EeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc-cCCcE
Q 038577 253 GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA-KLGQL 331 (860)
Q Consensus 253 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-~~g~i 331 (860)
++..+..+.. ...|..+.|++..+-++++.+ .++.|
T Consensus 377 ------------------------------------------~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 377 ------------------------------------------TGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ------------------------------------------CCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 4444443322 236777778877766655543 35789
Q ss_pred EEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577 332 LVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381 (860)
Q Consensus 332 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 381 (860)
.||++.+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 414 ~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999999999999999999999999999999999999999999998654
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=9.1e-30 Score=238.24 Aligned_cols=286 Identities=21% Similarity=0.339 Sum_probs=247.3
Q ss_pred eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce--EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577 298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES--YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV 375 (860)
Q Consensus 298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 375 (860)
....+..|.+.+..+.|-++...+++++.+ ..|.+|+...++ .+..+.+..+.|+++.|.++++.+++++.|+.+++
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~D-r~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSD-RIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchh-hhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 344556778889999999999999999887 999999987776 56666778889999999999999999999999999
Q ss_pred EECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577 376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD 455 (860)
Q Consensus 376 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (860)
|++.+.+...++.+|.+.|+++.|......+++|+.|.+++.||+.+..+.+++.... .+..++.+ ...+++|..|
T Consensus 246 Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S--~cnDI~~~--~~~~~SgH~D 321 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS--QCNDIVCS--ISDVISGHFD 321 (459)
T ss_pred eeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc--cccceEec--ceeeeecccc
Confidence 9999999999999999999999998877779999999999999999988877765443 33444444 5567778888
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc----cCCCeEEEEEeeCC
Q 038577 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP----HTHDVLTVVYRPDG 531 (860)
Q Consensus 456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~ 531 (860)
+ .|++||.++.........+. .|+++..++++..+.+++.|.++.+.|+++.+....+.. .....+.+.|||++
T Consensus 322 k-kvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 322 K-KVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred c-ceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 8 89999999999999988765 999999999999999999999999999998875444432 34458999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577 532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMY 608 (860)
Q Consensus 532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw 608 (860)
.|+++|+.||.|+||++.++++...+...... ..|++++|+|.|.+|++++.++.+.+|
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~------------------~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN------------------AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCC------------------cceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999999888765531 259999999999999999999999999
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.7e-28 Score=257.49 Aligned_cols=289 Identities=20% Similarity=0.279 Sum_probs=248.5
Q ss_pred CCCCceEEEEecCCCCEEEEEE--cCCeEEEEECCC------------ceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577 262 QAPSKVTACDYHRGLDMVVVGF--SNGVFGLYQMPD------------FVCIHLLSISREKITTAVFNELGNWLVFGCAK 327 (860)
Q Consensus 262 ~~~~~v~~~~~~~~~~~l~~~~--~~g~i~~~~~~~------------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 327 (860)
.+...|.++..+|++..+++|+ .||.+++|+... .+.+.....|.+.+.|+.|+|||+++++++.+
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455699999999999999999 899999998752 23445677788999999999999999999776
Q ss_pred CCcEEEEEccC------------------ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577 328 LGQLLVWEWRS------------------ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389 (860)
Q Consensus 328 ~g~i~v~d~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (860)
..|.||+... -+....+.+|...|..++|+|++.++++++.|++|.+||..+.+.+..+.+
T Consensus 91 -~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 -RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred -ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 9999998772 125667789999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC-----CCcEEEEEECCCCCEEEEEecC---CCeEEE
Q 038577 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS-----SRQFVSLASDQSGEVICAGTLD---SFEIFV 461 (860)
Q Consensus 390 ~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~---~~~i~v 461 (860)
|.+.|..+.|.|-|+++++-+.|++|++|++.+....+.+..+. ...+..+.|||||.+|++...- ...+.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 99999999999999999999999999999988877776665443 3457789999999999986542 238899
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeE
Q 038577 462 WSMKTGRLLDILSGHEGPVHGLVFSPT-----NA------------TLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVL 523 (860)
Q Consensus 462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~-----~~------------~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~ 523 (860)
.+..+.+.-..+-||.+++.++.|+|. .+ .+|+|+.|++|.||.....+++.... -....|.
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~ 329 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIV 329 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCcee
Confidence 999888988999999999999999982 11 68899999999999987766554444 3677899
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577 524 TVVYRPDGRQLACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 551 (860)
.++|+|||..|++++.||+|.++.+...
T Consensus 330 DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 330 DMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 9999999999999999999999987653
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-28 Score=243.27 Aligned_cols=277 Identities=21% Similarity=0.334 Sum_probs=242.5
Q ss_pred EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389 (860)
Q Consensus 310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (860)
.-+.|+ ..+.++++.+ ..+++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 181 nlldWs-s~n~laValg--~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~ 257 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG--QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG 257 (484)
T ss_pred hHhhcc-cCCeEEEEec--ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC
Confidence 345666 4456666654 5899999999886665555588999999999999999999999999999999999999998
Q ss_pred -CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc
Q 038577 390 -HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR 468 (860)
Q Consensus 390 -~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~ 468 (860)
|...|.+++|. +..+.+|+.|+.|..+|++..+........+...++.+.+++|+.++|.|+.|+ .+.|||....+
T Consensus 258 ~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN-~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 258 SHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDN-VVFIWDGLSPE 334 (484)
T ss_pred CcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCcc-ceEeccCCCcc
Confidence 99999999998 558999999999999999987766665556777899999999999999999999 99999998889
Q ss_pred eEEEecCcccCeEEEEEcC-CCCEEEEEe--CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe--CCCeE
Q 038577 469 LLDILSGHEGPVHGLVFSP-TNATLASSS--WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST--LDGQI 543 (860)
Q Consensus 469 ~~~~~~~h~~~v~~l~~s~-~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i 543 (860)
+...+..|...|..++|+| ...+||+|+ .|++|++||..++. ..........|.++.|++..+-|+++. .++.|
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-RIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-EecccccCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 9999999999999999999 467888875 59999999999887 555566778899999999988777753 46679
Q ss_pred EEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 544 HFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 544 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
.||+..+.+++..+.+|.. +|..+++||||..+++|+.|.++++|++-..
T Consensus 414 ~lw~~ps~~~~~~l~gH~~--------------------RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 414 TLWKYPSMKLVAELLGHTS--------------------RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEeccccceeeeecCCcc--------------------eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999986 5999999999999999999999999998764
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.2e-28 Score=255.29 Aligned_cols=294 Identities=21% Similarity=0.260 Sum_probs=243.2
Q ss_pred CCc-cCeeEEEEcCCCCEEEEEc--CCCcEEEEEccc------------CeEEEEee-cCCceeEEEECCCCCEEEEE-e
Q 038577 50 ESS-SNICRIAVSPDGTFLLTVD--ENQRCHFINLHC------------HVVLHRVR-FKYPVNAILFSPNGKYIAVG-T 112 (860)
Q Consensus 50 ~h~-~~v~~va~spdg~~la~~~--~d~~i~vwd~~~------------~~~~~~~~-~~~~v~~~~fspdg~~la~~-~ 112 (860)
+|. ..|.+++++|||..+|+|+ .|+.+.||+.+. .+.+.... |.+.|+|+.|+|||++||+| .
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 444 5689999999999999999 789999997652 12233333 89999999999999999999 6
Q ss_pred CCeEEEEeCCC-----------CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCccccc
Q 038577 113 GKLVQIWRSPG-----------FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNK 181 (860)
Q Consensus 113 ~~~i~iwd~~~-----------~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~ 181 (860)
|+.|.||.... +....+.++....+.+|.+.|..++|+|++.+|++++.|++|.+|+..+. ..
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF------~~ 163 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF------EL 163 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc------ee
Confidence 78889999872 34455678899999999999999999999999999999999999999988 67
Q ss_pred ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec--c
Q 038577 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD--D 259 (860)
Q Consensus 182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 259 (860)
...+.+|.+.|..+.|.|-|+ ++++-+.|+++++|++.. |.+.+.. .
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gk-----y~ASqsdDrtikvwrt~d--------------------------w~i~k~It~p 212 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGK-----YFASQSDDRTLKVWRTSD--------------------------WGIEKSITKP 212 (942)
T ss_pred eeeeecccccccceEECCccC-----eeeeecCCceEEEEEccc--------------------------ceeeEeeccc
Confidence 899999999999999999999 999999999999998653 3332211 1
Q ss_pred c--cCCCCceEEEEecCCCCEEEEEEc----CCeEEEEECCCceeEEEEeecCceeEEEEEeeC--------CC------
Q 038577 260 F--SQAPSKVTACDYHRGLDMVVVGFS----NGVFGLYQMPDFVCIHLLSISREKITTAVFNEL--------GN------ 319 (860)
Q Consensus 260 ~--~~~~~~v~~~~~~~~~~~l~~~~~----~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--------~~------ 319 (860)
+ .........+.|+|||.+|++... -..+.|.+-.+.+.-..+-+|..++.+++|+|. |.
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 1 123446788999999999997543 357888998888889999999999999999972 11
Q ss_pred --EEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 038577 320 --WLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380 (860)
Q Consensus 320 --~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 380 (860)
.+++.++.|+.|.||.....+++.... -....|..++|+|||-.|++++.||+|.++.++.
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 267777778999999987777665542 2456799999999999999999999999998864
No 83
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=9e-28 Score=226.25 Aligned_cols=282 Identities=23% Similarity=0.349 Sum_probs=252.0
Q ss_pred CcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEE
Q 038577 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTA 269 (860)
Q Consensus 190 ~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 269 (860)
..+.++...+... .+++|+.|..+.++|...++. ...+.+|...|+.
T Consensus 220 pgi~ald~~~s~~-----~ilTGG~d~~av~~d~~s~q~----------------------------l~~~~Gh~kki~~ 266 (506)
T KOG0289|consen 220 PGITALDIIPSSS-----KILTGGEDKTAVLFDKPSNQI----------------------------LATLKGHTKKITS 266 (506)
T ss_pred CCeeEEeecCCCC-----cceecCCCCceEEEecchhhh----------------------------hhhccCcceEEEE
Confidence 4567777777655 899999999999999887532 4667899999999
Q ss_pred EEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC--
Q 038577 270 CDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-- 347 (860)
Q Consensus 270 ~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-- 347 (860)
+.++|+...+++++.|-.|++|.............|..+|+.+..+|.|+|++.++.+ ++..+.|++++..+.....
T Consensus 267 v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d-~~w~Fsd~~~g~~lt~vs~~~ 345 (506)
T KOG0289|consen 267 VKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND-GTWAFSDISSGSQLTVVSDET 345 (506)
T ss_pred EEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCC-ceEEEEEccCCcEEEEEeecc
Confidence 9999999999999999999999999998889999999999999999999999999776 9999999999998877643
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577 348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427 (860)
Q Consensus 348 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 427 (860)
..-.+++.+|+|||..|.+|..||.+++||+.++..+..|.+|.++|..+.|+.+|-+|++++.|+.|++||+++.+..+
T Consensus 346 s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k 425 (506)
T KOG0289|consen 346 SDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK 425 (506)
T ss_pred ccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc
Confidence 23458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC--CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK--TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~--~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
++..+....+.++.|++.|.++++++.+= +|++++-. +...+..+..|.+..+++.|....+++++++.|..++++.
T Consensus 426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l-~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDL-QVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred eeeccccccceeEEEcCCCCeEEeeccee-EEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 99999888999999999999999996654 55555533 5567778888999999999999999999999999998876
Q ss_pred c
Q 038577 506 V 506 (860)
Q Consensus 506 ~ 506 (860)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=251.24 Aligned_cols=281 Identities=26% Similarity=0.447 Sum_probs=248.5
Q ss_pred cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE-ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 038577 305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK-QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFC 383 (860)
Q Consensus 305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 383 (860)
+...+.+..|. +..++++.. +++|.+||..++..+.. +.+|.+.|.++++...+..+++|+.|.++++||..+|.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~-~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSD-DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCC-CceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 34566677776 445555544 49999999999998888 899999999999998888999999999999999999999
Q ss_pred EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577 384 FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWS 463 (860)
Q Consensus 384 ~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d 463 (860)
...+.+|.+.|.++...+. .+++|+.|.+|++|++.++..+..+.. +...|.++..+ +.++++|+.|+ .|.+||
T Consensus 284 ~~~l~gh~stv~~~~~~~~--~~~sgs~D~tVkVW~v~n~~~l~l~~~-h~~~V~~v~~~--~~~lvsgs~d~-~v~VW~ 357 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTIDPF--LLVSGSRDNTVKVWDVTNGACLNLLRG-HTGPVNCVQLD--EPLLVSGSYDG-TVKVWD 357 (537)
T ss_pred EEEecCCCceEEEEEccCc--eEeeccCCceEEEEeccCcceEEEecc-ccccEEEEEec--CCEEEEEecCc-eEEEEE
Confidence 9999999999999987644 788899999999999999999999887 67789999988 89999999999 999999
Q ss_pred CCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC-cceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577 464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG-KGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ 542 (860)
Q Consensus 464 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 542 (860)
..++++++.+.+|.+.|.++.+.+. ..+++|+.|++|++||+.+. ++...+..|..-+..+.+ .+++|++++.|++
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence 9999999999999999999988654 89999999999999999999 777778888888866655 6789999999999
Q ss_pred EEEEeCCCCceeEEEecc-cccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEE
Q 038577 543 IHFWDPLNGELMYTIEGR-RDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRF 619 (860)
Q Consensus 543 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~ 619 (860)
|++||..+++++.++.++ .. .|+.+++. ...+++++.||.+.+||++++++++.+
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~--------------------~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVG--------------------GVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEeecccCceeeeeccCCcc--------------------cEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999984 22 47888875 578889999999999999999998866
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=225.65 Aligned_cols=282 Identities=20% Similarity=0.283 Sum_probs=245.7
Q ss_pred ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 386 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 386 (860)
..+.++...+....+++++. |..+.++|...++.+..+.+|...|+.+.++|+...+++++.|-.|++|..........
T Consensus 220 pgi~ald~~~s~~~ilTGG~-d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGE-DKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCC-CCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 35667777777555665554 48999999999999999999999999999999999999999999999999988888888
Q ss_pred eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
...|..+|+.+..+|.|.||++++.|++..+.|++++..+...... ....+++.+|+|||..+.+|..|+ .+++||+.
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~-~vkiwdlk 377 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDG-VVKIWDLK 377 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCc-eEEEEEcC
Confidence 8899999999999999999999999999999999999988877764 556789999999999999999999 99999999
Q ss_pred CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEE
Q 038577 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIH 544 (860)
Q Consensus 466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 544 (860)
++..+..|.+|.++|..++|+.+|-|||+++.|+.|++||++..+....+. ....++.++.|.+.|.+|+.++.|=+|+
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence 999999999999999999999999999999999999999999887444443 3444799999999999999998876677
Q ss_pred EEeCC--CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 545 FWDPL--NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 545 iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
+++-. +...+..+..|.. ..+.+.|....+++++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg--------------------~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSG--------------------LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhccc--------------------ccceeeecccceEEeeccchhheEEeec
Confidence 76633 4455666665553 3689999999999999999999888765
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=217.94 Aligned_cols=297 Identities=18% Similarity=0.266 Sum_probs=242.2
Q ss_pred EEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCC------------CCcccceeEEEEEeeccCCCeEEEEEcCCCC
Q 038577 88 HRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPG------------FKKEVFAFELIRTLADCNDKVTALNWSPDSN 154 (860)
Q Consensus 88 ~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~------------~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~ 154 (860)
....|+.++++.+|||||.++|+| .|..|+|.|++. +. .....++++++..|.+.|+++.|.|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~-~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD-TQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC-cccCCceEeehhhccCcccceeecchhh
Confidence 334499999999999999999999 899999999871 11 1112357899999999999999999999
Q ss_pred eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCcccc
Q 038577 155 YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETM 234 (860)
Q Consensus 155 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~ 234 (860)
.|++++.|++|+++|+.... . ...........+|.++.|+|.|. +|+.+.+..++++||+++-++
T Consensus 186 ILiS~srD~tvKlFDfsK~s-a---KrA~K~~qd~~~vrsiSfHPsGe-----fllvgTdHp~~rlYdv~T~Qc------ 250 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTS-A---KRAFKVFQDTEPVRSISFHPSGE-----FLLVGTDHPTLRLYDVNTYQC------ 250 (430)
T ss_pred eEEeccCCCeEEEEecccHH-H---HHHHHHhhccceeeeEeecCCCc-----eEEEecCCCceeEEeccceeE------
Confidence 99999999999999998651 1 12233334567899999999999 999999999999999998543
Q ss_pred CCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee--cCceeEEE
Q 038577 235 EDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI--SREKITTA 312 (860)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~--~~~~i~~~ 312 (860)
+.....-.+|.+.|+++.+++.+++.++++.||.|++||--+++++.++.. ....|.+.
T Consensus 251 -------------------fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 251 -------------------FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred -------------------eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 112234456888999999999999999999999999999989999887754 33479999
Q ss_pred EEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc-----cCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEE
Q 038577 313 VFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-----FDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFVT 386 (860)
Q Consensus 313 ~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~ 386 (860)
.|..+|+++++++.+ ..+++|++.+++.+..+.+.. ..-+...|+....+++.-.. .+.+.-||.++...+..
T Consensus 312 ~Ftkn~kyiLsSG~D-S~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 312 VFTKNGKYILSSGKD-STVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEccCCeEEeecCCc-ceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 999999999988776 999999999999998875431 11234457777777766543 57899999988766554
Q ss_pred e-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 387 F-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 387 ~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
+ .+|++++..+.-+|.+..+++++.|..+++|--
T Consensus 391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 3 479999999999999999999999999999964
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=6.7e-29 Score=232.45 Aligned_cols=282 Identities=20% Similarity=0.320 Sum_probs=247.6
Q ss_pred ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE
Q 038577 258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d 335 (860)
..+..|.+.+..+.|-++...|++|+.|..|.+|+....+ .+.++.+..+.|+.+.|.++++.+++++.+ +.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d-~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASND-KNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCC-Cceeeee
Confidence 3455688899999999999999999999999999987665 667788888899999999999999988776 9999999
Q ss_pred ccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcE
Q 038577 336 WRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTV 415 (860)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 415 (860)
....+...++.+|...|+++.|......+++|+.|.+|+.||+....+..++. ..+.+.+|+.+ ...++++-.|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccce
Confidence 99999999999999999999999888779999999999999999988887764 34456666665 4468899999999
Q ss_pred EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc----ccCeEEEEEcCCCCE
Q 038577 416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH----EGPVHGLVFSPTNAT 491 (860)
Q Consensus 416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h----~~~v~~l~~s~~~~~ 491 (860)
++||.++.......+... .++++..+++|..+.+.+.|+ .+.++|+++.+....+... ....+.+.|||++.|
T Consensus 325 RfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDd-tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Y 401 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDD-TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSY 401 (459)
T ss_pred EEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCC-ceeeeecccccEEEEeeccccccccccceeEECCCCce
Confidence 999999999888877665 899999999999999999999 9999999999888877542 234888999999999
Q ss_pred EEEEeCCCcEEEEEccCCcceeEEcccCC--CeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577 492 LASSSWDKTVRLWNVFEGKGSVESFPHTH--DVLTVVYRPDGRQLACSTLDGQIHFW 546 (860)
Q Consensus 492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iw 546 (860)
+++||.||.|+||++.+++.......... .|++++|+|.|..|++++.++.+.+|
T Consensus 402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999987666654333 59999999999999999999999999
No 88
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.2e-26 Score=234.17 Aligned_cols=460 Identities=19% Similarity=0.233 Sum_probs=333.1
Q ss_pred cccccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCC---EEEEEcCCCcEEEEEccc
Q 038577 8 LLGAPYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGT---FLLTVDENQRCHFINLHC 83 (860)
Q Consensus 8 ~~g~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~---~la~~~~d~~i~vwd~~~ 83 (860)
+.|..+.-....|| |+++++...++.|.||...|+.+...+.+|...++.+.+.|... ++.+++.+|.|++||...
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~ 91 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD 91 (792)
T ss_pred eccccceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC
Confidence 44545555678899 99999999999999999999999999999999999999988654 667899999999999999
Q ss_pred CeEEEEeecCCcee-----------------------------------------------------------EEEECCC
Q 038577 84 HVVLHRVRFKYPVN-----------------------------------------------------------AILFSPN 104 (860)
Q Consensus 84 ~~~~~~~~~~~~v~-----------------------------------------------------------~~~fspd 104 (860)
+..+..+....++. ++.+++.
T Consensus 92 ~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ 171 (792)
T KOG1963|consen 92 GELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNS 171 (792)
T ss_pred cEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCC
Confidence 98887766333222 3334444
Q ss_pred CCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecc-cccCcccccce
Q 038577 105 GKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE-KLKGIHTNKPF 183 (860)
Q Consensus 105 g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~-~~~~~~~~~~~ 183 (860)
|.+.+......+.+|+.+.+..... ....-..|.-.+++.++||.++++|++..||.|.+|.--. .... ....
T Consensus 172 ge~~~i~~~~~~~~~~v~~~~~~~~---~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~---~t~t 245 (792)
T KOG1963|consen 172 GEFKGIVHMCKIHIYFVPKHTKHTS---SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS---ETCT 245 (792)
T ss_pred ceEEEEEEeeeEEEEEecccceeec---cchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc---ccce
Confidence 5555555566677777766431110 1112234666789999999999999999999999997554 2122 4567
Q ss_pred EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577 184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA 263 (860)
Q Consensus 184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (860)
.+.-|.+.|.++.|+++|. +|++|+..|.+.+|.++++. +..++.-
T Consensus 246 ~lHWH~~~V~~L~fS~~G~-----~LlSGG~E~VLv~Wq~~T~~-----------------------------kqfLPRL 291 (792)
T KOG1963|consen 246 LLHWHHDEVNSLSFSSDGA-----YLLSGGREGVLVLWQLETGK-----------------------------KQFLPRL 291 (792)
T ss_pred EEEecccccceeEEecCCc-----eEeecccceEEEEEeecCCC-----------------------------ccccccc
Confidence 8889999999999999999 99999999999999999853 4566677
Q ss_pred CCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec-----------CceeEEEEEeeCCCEEEEEEccCCcEE
Q 038577 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-----------REKITTAVFNELGNWLVFGCAKLGQLL 332 (860)
Q Consensus 264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-----------~~~i~~~~~s~~~~~l~~~~~~~g~i~ 332 (860)
.+.|..+.++||++..++...|+.|.+....+.+...++++- .+-.+.++++|.-+.++..+.. |.|.
T Consensus 292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~-g~vQ 370 (792)
T KOG1963|consen 292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP-GHVQ 370 (792)
T ss_pred CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC-ceEE
Confidence 889999999999999999999999999998776655544432 2335678888855555555554 9999
Q ss_pred EEEccCceEEEEec-----------CcccCeEEEEEcCCCCEEEEEeC--------C--CcEEEEECCCCeeEE-----E
Q 038577 333 VWEWRSESYILKQQ-----------GHYFDVNCLAYSPDSQLLATGAD--------D--NKVKVWTVSSGFCFV-----T 386 (860)
Q Consensus 333 v~d~~~~~~~~~~~-----------~~~~~v~~~~~s~~~~~l~~~~~--------d--g~i~iwd~~~~~~~~-----~ 386 (860)
+||+.+.+.+.++. .+.-.+++++.+..|.+++|+-. | -.+++|-......-. .
T Consensus 371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 99998887766552 12234677888888999988642 2 357888765443222 2
Q ss_pred eecCCCceEEEEEeeCC--CEEEEEeCCCcEEEEEcccccee---------eEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577 387 FTEHTNAVTALHFMANN--HSLLSASLDGTVRAWDLFRYRNF---------RTFTTPSSRQFVSLASDQSGEVICAGTLD 455 (860)
Q Consensus 387 ~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (860)
...|...+...++.+.. ...++++.||.+++|-+...+.+ ..+..-+..++.+.+|+.||..++++..+
T Consensus 451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~ 530 (792)
T KOG1963|consen 451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDD 530 (792)
T ss_pred ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCC
Confidence 24587777777765432 37899999999999998433221 11222345678899999999988888776
Q ss_pred CCeEEEEECCC-CceEEEecCcccCeEEEEEcCCC--CEEEEEeCCCcEEEEEccCCc
Q 038577 456 SFEIFVWSMKT-GRLLDILSGHEGPVHGLVFSPTN--ATLASSSWDKTVRLWNVFEGK 510 (860)
Q Consensus 456 ~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~ 510 (860)
.|.+||..+ .++.........++..+.+.... ...+.....+.+.+|++.+..
T Consensus 531 --~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~ 586 (792)
T KOG1963|consen 531 --TITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMS 586 (792)
T ss_pred --EEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhh
Confidence 899999988 44444433333444444443211 122333446789999987765
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=242.12 Aligned_cols=361 Identities=19% Similarity=0.278 Sum_probs=277.6
Q ss_pred EEEEc-CCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577 146 ALNWS-PDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS 224 (860)
Q Consensus 146 ~l~~s-~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 224 (860)
.+..+ |.+++|++||.||.|++|+...............+..|.+.|..+....+++ .|++++.|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-----tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-----TLISASSDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-----ceEEecCCceEEEeecc
Confidence 34443 4567899999999999999987622111123677889999999999999998 89999999999999987
Q ss_pred CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe-cCCCCEEEEEEcCCeEEEEECCCcee--E--
Q 038577 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY-HRGLDMVVVGFSNGVFGLYQMPDFVC--I-- 299 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~~g~i~~~~~~~~~~--~-- 299 (860)
.+.. | ....+..|...|.|+++ .++...+|+|+-|+.|.+||+.++.. +
T Consensus 104 ~~~~-----------------------~---c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s 157 (735)
T KOG0308|consen 104 KDNT-----------------------F---CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVAS 157 (735)
T ss_pred cCcc-----------------------h---hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhh
Confidence 6421 1 24556779999999999 88899999999999999999987632 1
Q ss_pred ------EEEe-ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 300 ------HLLS-ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK 372 (860)
Q Consensus 300 ------~~~~-~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 372 (860)
..+. ++...+.+++-++.|..++.++.+ +.+++||.++++.+.++++|...|.++..++||..+++++.||+
T Consensus 158 ~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-k~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 158 FNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-KDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred ccccccccCCCCCccceeeeecCCcceEEEecCcc-cceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce
Confidence 2223 567789999999999777666665 99999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577 373 VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAG 452 (860)
Q Consensus 373 i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (860)
|++||+...+++.++..|...|+++..+|+-..+++|+.||.|..-|+++.... ++......++..+..+...+-+-++
T Consensus 237 IrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlick~daPv~~l~~~~~~~~~Wvt 315 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLICKEDAPVLKLHLHEHDNSVWVT 315 (735)
T ss_pred EEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEeecCCCchhhhhhccccCCceee
Confidence 999999999999999999999999999999999999999999999999885322 2223333456666666555555666
Q ss_pred ecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC
Q 038577 453 TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR 532 (860)
Q Consensus 453 ~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~ 532 (860)
+.++ .|.-|-..-. ..+++.+++.. -+.|......+.... .........++..-++-.|.+
T Consensus 316 Ttds-~I~rW~~~~~---------------~~l~~s~~~~~-~~T~~~~~~~~~~~t--p~~vi~Gg~ai~k~~mL~dkR 376 (735)
T KOG0308|consen 316 TTDS-SIKRWKLEPD---------------IALSVSGDLDF-FSTDSNNHSCDLTNT--PDSVIPGGAAIKKHAMLNDKR 376 (735)
T ss_pred eccc-cceecCCccc---------------cccccCCCCCc-ccccCCCccccccCC--CceeccCchhhhhhhhhcCcc
Confidence 7776 7777765421 14445555444 223444444443221 122233445566666777999
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577 533 QLACSTLDGQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 533 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 558 (860)
++++-...|.+.+||+-.+..+..+.
T Consensus 377 hVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 377 HVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred eEeeecCCCCEEEEEeeeeeehhhcc
Confidence 99999999999999998777766554
No 90
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.96 E-value=2.2e-26 Score=226.77 Aligned_cols=529 Identities=19% Similarity=0.235 Sum_probs=324.0
Q ss_pred CCCEEEee---eCCeEEEEECCC-C---cEEeeccCCccCeeEEEEcC-CCCEEEEEcCCCcEEEEEcccCeEEEE----
Q 038577 22 QNTKLISP---VGNRVSVTDLIK-S---KTVTLPVESSSNICRIAVSP-DGTFLLTVDENQRCHFINLHCHVVLHR---- 89 (860)
Q Consensus 22 dg~~l~~~---~~~~i~v~d~~~-~---~~~~~~~~h~~~v~~va~sp-dg~~la~~~~d~~i~vwd~~~~~~~~~---- 89 (860)
.+.++|+- .|+.+-|.-+.. | +...++.+|...|+.+.||| +..+||+++.|..|+||.+..|..-..
T Consensus 42 S~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 42 SADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ccceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 34455553 245666665542 2 22456668999999999999 556899999999999999985422111
Q ss_pred --ee-cCCceeEEEECCCC-CEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeE
Q 038577 90 --VR-FKYPVNAILFSPNG-KYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAV 165 (860)
Q Consensus 90 --~~-~~~~v~~~~fspdg-~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v 165 (860)
+. ..-.|.++.|+|.. .+++++..+.++|||+.+++. +..+.+|.+.|.+..|+.||..|++.+.|..|
T Consensus 122 ~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~-------~~el~~h~d~vQSa~WseDG~llatscKdkqi 194 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKT-------AVELSGHTDKVQSADWSEDGKLLATSCKDKQI 194 (1012)
T ss_pred eeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCce-------eecccCCchhhhccccccCCceEeeecCCcce
Confidence 11 23468899999954 577788999999999999884 78899999999999999999999999999999
Q ss_pred EEEeecccccCcccccceEeecCCCcE-EEEEEccCCCCCccceEEEEcCC----ccEEEeeecCCCCCCccccCCCCCC
Q 038577 166 RLFYVKEKLKGIHTNKPFLLLGHRDSV-VGCFFSVDKKTDKVNRIYTIARD----CYMFSWGFSGNDGKIDETMEDSEPP 240 (860)
Q Consensus 166 ~vwd~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~~~~~~~~~~l~s~~~d----g~i~~w~~~~~~~~~~~~~~~~~~~ 240 (860)
+|||..... .......+|.+.- ..+.|..+-. +|++.+.+ ..+++||...-...
T Consensus 195 rifDPRa~~-----~piQ~te~H~~~rdsRv~w~Gn~~-----rlisTGF~~~R~reV~~~Dtr~f~~p----------- 253 (1012)
T KOG1445|consen 195 RIFDPRASM-----EPIQTTEGHGGMRDSRVLWAGNWE-----RLISTGFTTKRIREVRAYDTRKFGAP----------- 253 (1012)
T ss_pred EEeCCccCC-----Cccccccccccchhheeeeccchh-----hhhhcccchhhheeeeeeeccccCCc-----------
Confidence 999988762 3345557776542 3467776666 77777765 56888987642110
Q ss_pred CCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEE-EEEcCCeEEEEECCC------------------------
Q 038577 241 SPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVV-VGFSNGVFGLYQMPD------------------------ 295 (860)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~~~~~------------------------ 295 (860)
...........|.--.|.||.++++ +|-.+..+..+.+.+
T Consensus 254 ---------------~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvp 318 (1012)
T KOG1445|consen 254 ---------------VHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVP 318 (1012)
T ss_pred ---------------ceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecc
Confidence 0000000111122223333333322 222223333332210
Q ss_pred -------------------------------------------------------------ceeEEEEe------ec---
Q 038577 296 -------------------------------------------------------------FVCIHLLS------IS--- 305 (860)
Q Consensus 296 -------------------------------------------------------------~~~~~~~~------~~--- 305 (860)
.+.++... .|
T Consensus 319 kral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~ 398 (1012)
T KOG1445|consen 319 KRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPP 398 (1012)
T ss_pred hhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCC
Confidence 00000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 038577 306 -------------------------------------------------------------------------------- 305 (860)
Q Consensus 306 -------------------------------------------------------------------------------- 305 (860)
T Consensus 399 pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g 478 (1012)
T KOG1445|consen 399 PPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQG 478 (1012)
T ss_pred CCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccC
Confidence
Q ss_pred -CceeEEEE------EeeCCCEE--------EEEEcc----------------CCcEEEE---EccCceE----EEEe--
Q 038577 306 -REKITTAV------FNELGNWL--------VFGCAK----------------LGQLLVW---EWRSESY----ILKQ-- 345 (860)
Q Consensus 306 -~~~i~~~~------~s~~~~~l--------~~~~~~----------------~g~i~v~---d~~~~~~----~~~~-- 345 (860)
..++..+. .-|...-+ .++-.. ..+-.+. .++.... +.++
T Consensus 479 ~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH 558 (1012)
T KOG1445|consen 479 NSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRH 558 (1012)
T ss_pred CCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheee
Confidence 00000000 00000000 000000 0000000 0000000 0011
Q ss_pred ----cCcccC----e---------EEEEEcCCCCEEEE--EeCCCcEEEEECCCCee-----EEEeecCCCceEEEEEee
Q 038577 346 ----QGHYFD----V---------NCLAYSPDSQLLAT--GADDNKVKVWTVSSGFC-----FVTFTEHTNAVTALHFMA 401 (860)
Q Consensus 346 ----~~~~~~----v---------~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~i~~~~ 401 (860)
.+|... . .|=-|+.+..++|+ .+..|.|-||+++..-. +-.+ .....|+++.|.|
T Consensus 559 ~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdP 637 (1012)
T KOG1445|consen 559 VDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDP 637 (1012)
T ss_pred ccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCC
Confidence 122211 1 11123344555554 45568999999875321 1122 2456799999999
Q ss_pred -CCCEEEEEeCCCcEEEEEccccceee------EeeCCCCCcEEEEEECCC-CCEEEEEecCCCeEEEEECCCCceEEEe
Q 038577 402 -NNHSLLSASLDGTVRAWDLFRYRNFR------TFTTPSSRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKTGRLLDIL 473 (860)
Q Consensus 402 -~~~~l~s~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~~~~~~~~ 473 (860)
|...|+.++.||.|++|.+..+.... .....+...|+++.|+|- ...|++++.|. +|++||+++++....+
T Consensus 638 FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~-Ti~lWDl~~~~~~~~l 716 (1012)
T KOG1445|consen 638 FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS-TIELWDLANAKLYSRL 716 (1012)
T ss_pred CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc-eeeeeehhhhhhhhee
Confidence 56789999999999999997654322 222345568999999995 46777888888 9999999999999999
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-c-cCCCeEEEEEeeCCCEEEEEeCCC----eEEEEe
Q 038577 474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-P-HTHDVLTVVYRPDGRQLACSTLDG----QIHFWD 547 (860)
Q Consensus 474 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~~v~~~~~s~~~~~l~~~~~dg----~i~iwd 547 (860)
.+|.+.|.+++|||+|+.+|+.+.||+|++|..++++...... + ....-..+.|.-||+++++.+.|. .|.+||
T Consensus 717 ~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 717 VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYD 796 (1012)
T ss_pred ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhh
Confidence 9999999999999999999999999999999988876433222 1 223345688999999999887764 488888
Q ss_pred CCCCc--eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC-EEEEecCCCeEEEEECCCce
Q 038577 548 PLNGE--LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS-YILAGGSSKYICMYDVADQV 614 (860)
Q Consensus 548 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~v~vwd~~~~~ 614 (860)
..+-. .+.+....... .+.--.+.+|.. .+++|-.|..|.+|.+....
T Consensus 797 Aq~l~~~pl~t~~lDvap-------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 797 AQTLDLRPLYTQVLDVAP-------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred hhhccCCcceeeeecccC-------------------ccccccccCCCceEEEecCCCceEEEEEecCCC
Confidence 76532 33322111100 012223455655 55677789999999986554
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=8.8e-26 Score=193.83 Aligned_cols=284 Identities=20% Similarity=0.332 Sum_probs=236.6
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce---------------eEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577 263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV---------------CIHLLSISREKITTAVFNELGNWLVFGCAK 327 (860)
Q Consensus 263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~---------------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 327 (860)
....|.+++|+|.|.+.++|+...++++...+... ....-+.|.+.|.+.+|+|+|+.+++++.+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 44579999999999999999999999998665211 112234577899999999999999988765
Q ss_pred CCcEEEEEccCceE-----EEEecCcccCeEEEEEcCC----CCEEEEEeC-CCcEEEEECCCCeeEEEeecCCCceEEE
Q 038577 328 LGQLLVWEWRSESY-----ILKQQGHYFDVNCLAYSPD----SQLLATGAD-DNKVKVWTVSSGFCFVTFTEHTNAVTAL 397 (860)
Q Consensus 328 ~g~i~v~d~~~~~~-----~~~~~~~~~~v~~~~~s~~----~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i 397 (860)
.+|++.-...... -..+.-|.+.|+.++|-.+ +..|++++. |..|++-|..+|.....+.+|.+.|.++
T Consensus 111 -k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 -KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred -ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 8898876554332 2345678999999999653 456776654 6678888888999999999999999887
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC------CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577 398 HFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS------SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD 471 (860)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~ 471 (860)
++-++-.+++|+.|.+|++||++-..++.++.... ...+.+++++|.|+++++|..|. .-.+||++.+++++
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds-sc~lydirg~r~iq 267 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS-SCMLYDIRGGRMIQ 267 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC-ceEEEEeeCCceee
Confidence 34567799999999999999999888888776432 34688999999999999999999 99999999999999
Q ss_pred EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc----ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK----GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
.+..|...|.++.|||...++.+++.|..|++-|+...- .+.....|...+..+.|+|..--+++.+.|.++.+|-
T Consensus 268 ~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 268 RFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred eeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 999999999999999999999999999999999986532 2344457999999999999998899999999999997
Q ss_pred CC
Q 038577 548 PL 549 (860)
Q Consensus 548 ~~ 549 (860)
++
T Consensus 348 ~~ 349 (350)
T KOG0641|consen 348 LN 349 (350)
T ss_pred cC
Confidence 64
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.1e-27 Score=214.26 Aligned_cols=339 Identities=17% Similarity=0.248 Sum_probs=258.3
Q ss_pred eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
+.+++.+.||.+.|+.++-......+.+++.|.+.+||.++++ .+.....||.+.|+++.|++.+. .++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg------~CL~~Y~GH~GSVNsikfh~s~~-----L~l 206 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG------ACLATYTGHTGSVNSIKFHNSGL-----LLL 206 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc------cceeeecccccceeeEEeccccc-----eEE
Confidence 3467889999999999998887789999999999999999999 78999999999999999999998 999
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~ 290 (860)
+++.|++..+|...-. |.......-..|.+.- ....+ |
T Consensus 207 TaSGD~taHIW~~av~-------------------------~~vP~~~a~~~hSsEe-E~e~s-D--------------- 244 (481)
T KOG0300|consen 207 TASGDETAHIWKAAVN-------------------------WEVPSNNAPSDHSSEE-EEEHS-D--------------- 244 (481)
T ss_pred EccCCcchHHHHHhhc-------------------------CcCCCCCCCCCCCchh-hhhcc-c---------------
Confidence 9999999999974421 1111100000000000 00000 0
Q ss_pred EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD 370 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 370 (860)
...+-+.-....|| .+|+ .++..+.+|...|.+..|...|+.+++++.|
T Consensus 245 --------------e~~~d~d~~~~sD~----------~tiR-------vPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD 293 (481)
T KOG0300|consen 245 --------------EHNRDTDSSEKSDG----------HTIR-------VPLMRLTGHRAVVSACDWLAGGQQMVTASWD 293 (481)
T ss_pred --------------ccccccccccccCC----------ceee-------eeeeeeeccccceEehhhhcCcceeeeeecc
Confidence 00000000000111 1222 3456678999999999999999999999999
Q ss_pred CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577 371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450 (860)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 450 (860)
.+..+||++++..+..+.+|....+.++-+|..+.+++++.|.+.++||++..
T Consensus 294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--------------------------- 346 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--------------------------- 346 (481)
T ss_pred ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh---------------------------
Confidence 99999999999999999999999999999999999999999999999997421
Q ss_pred EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530 (860)
Q Consensus 451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 530 (860)
-..+..|+||...|++..|.-+. .+++|+.|.+|++||+++.......+...++++.++.+..
T Consensus 347 ----------------I~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g 409 (481)
T KOG0300|consen 347 ----------------IQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKG 409 (481)
T ss_pred ----------------cceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecC
Confidence 12345678899999999998654 6899999999999999998877777888899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC--CEEEEecCCCeEEEE
Q 038577 531 GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG--SYILAGGSSKYICMY 608 (860)
Q Consensus 531 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~v~vw 608 (860)
+..++.-.++..|++||++..+ +..++.... -.|...|++++|..+- .-|++++-|..+.=|
T Consensus 410 ~~iIAiPhDNRqvRlfDlnG~R-laRlPrtsR---------------qgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW 473 (481)
T KOG0300|consen 410 HPIIAIPHDNRQVRLFDLNGNR-LARLPRTSR---------------QGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGW 473 (481)
T ss_pred CceEEeccCCceEEEEecCCCc-cccCCcccc---------------cccceeeeeeeccccCcccccccccccceeeee
Confidence 8899999999999999996443 333321110 0122358999998654 368899999999999
Q ss_pred ECCCc
Q 038577 609 DVADQ 613 (860)
Q Consensus 609 d~~~~ 613 (860)
++...
T Consensus 474 ~in~p 478 (481)
T KOG0300|consen 474 KINTP 478 (481)
T ss_pred Eeccc
Confidence 98653
No 93
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=226.91 Aligned_cols=298 Identities=17% Similarity=0.238 Sum_probs=238.7
Q ss_pred ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
.....+.+|...|.++++.|.|. ++++|+-|.+|++||+........ . .+..
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~Ga-----R~~sGs~Dy~v~~wDf~gMdas~~-------------------~----fr~l 209 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGA-----RFVSGSLDYTVKFWDFQGMDASMR-------------------S----FRQL 209 (641)
T ss_pred cceEeccCCceEEEEeeecCCCc-----eeeeccccceEEEEecccccccch-------------------h----hhcc
Confidence 45678889999999999999999 999999999999999987543110 1 1223
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE------------EeecCceeEEEEEeeCCCEEEEEEcc
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL------------LSISREKITTAVFNELGNWLVFGCAK 327 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~------------~~~~~~~i~~~~~s~~~~~l~~~~~~ 327 (860)
.+.....|.++.|++.|+.+++.+.....+++|-...+.... .++|...+++.+|+|+.+..+.+++.
T Consensus 210 ~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 210 QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred CcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC
Confidence 344556899999999999999999999999999866554443 34566789999999999988888888
Q ss_pred CCcEEEEEccCceEEEEe------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEeecCCC--ceEE
Q 038577 328 LGQLLVWEWRSESYILKQ------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF---CFVTFTEHTN--AVTA 396 (860)
Q Consensus 328 ~g~i~v~d~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~--~v~~ 396 (860)
||++++||+...+..... .+..-+++.++|+++|+.||+|+.||.|.+|+..+.. ....-..|.. .|++
T Consensus 290 DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Its 369 (641)
T KOG0772|consen 290 DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITS 369 (641)
T ss_pred CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeE
Confidence 899999998765332221 2344578999999999999999999999999975432 2223346776 8999
Q ss_pred EEEeeCCCEEEEEeCCCcEEEEEccccceee-Ee-eCCCCCcEEEEEECCCCCEEEEEecC-----CCeEEEEECCCCce
Q 038577 397 LHFMANNHSLLSASLDGTVRAWDLFRYRNFR-TF-TTPSSRQFVSLASDQSGEVICAGTLD-----SFEIFVWSMKTGRL 469 (860)
Q Consensus 397 i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~i~v~d~~~~~~ 469 (860)
+.|+++|++|++-|.|+++++||++..+..- .. ..+....-+.++|||+.++|++|..- .+.+++||..+.+.
T Consensus 370 i~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~ 449 (641)
T KOG0772|consen 370 ISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT 449 (641)
T ss_pred EEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence 9999999999999999999999998765332 21 23344456789999999999998652 23799999999999
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
++.+.-....|..+.|+|.-+.+..++.||.+++|=
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 998887788899999999988888899999999874
No 94
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.5e-25 Score=191.05 Aligned_cols=303 Identities=18% Similarity=0.307 Sum_probs=236.4
Q ss_pred EEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCC------C-C-cccceeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577 87 LHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPG------F-K-KEVFAFELIRTLADCNDKVTALNWSPDSNYLL 157 (860)
Q Consensus 87 ~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~------~-~-~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 157 (860)
+..+.....|++++|.|.|.+.|+| ...+.+|-..+. + + ....|..+..+-+.|.+.|.|.+|||+|.+++
T Consensus 26 i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 26 INILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred EEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEE
Confidence 3444456789999999999999999 556666654331 1 1 11222334455667899999999999999999
Q ss_pred EeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCccEEEeeecCCCCCCccccCC
Q 038577 158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDETMED 236 (860)
Q Consensus 158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~~~~~ 236 (860)
+|+.|.+|++...... ..........+.-|.+.|..++|..+... +...|++++ .|..|++-|...++.
T Consensus 106 tgsndk~ik~l~fn~d-t~~~~g~dle~nmhdgtirdl~fld~~~s-~~~il~s~gagdc~iy~tdc~~g~~-------- 175 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNAD-TCNATGHDLEFNMHDGTIRDLAFLDDPES-GGAILASAGAGDCKIYITDCGRGQG-------- 175 (350)
T ss_pred ecCCCceEEEEecccc-cccccCcceeeeecCCceeeeEEecCCCc-CceEEEecCCCcceEEEeecCCCCc--------
Confidence 9999999999877765 33333456778889999999999765442 222455544 356666666665533
Q ss_pred CCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec-------Ccee
Q 038577 237 SEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-------REKI 309 (860)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-------~~~i 309 (860)
-..+.+|.+.|.++ ++-++-++++|+.|.+|++||+.-..++.++... ...|
T Consensus 176 --------------------~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 176 --------------------FHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred --------------------ceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 34556777777765 4456789999999999999999887777765432 2578
Q ss_pred EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEE
Q 038577 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFV 385 (860)
Q Consensus 310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~ 385 (860)
.+++..|.|+.++++..+ ....+||++.++.++.+..|...|+|+.|+|...++++++.|..|++-|++.. -.+.
T Consensus 235 aav~vdpsgrll~sg~~d-ssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHAD-SSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred EEEEECCCcceeeeccCC-CceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence 999999999999988776 88999999999999999999999999999999999999999999999998632 2344
Q ss_pred EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF 421 (860)
Q Consensus 386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 421 (860)
....|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 556799999999999999899999999999999763
No 95
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-27 Score=207.17 Aligned_cols=279 Identities=22% Similarity=0.333 Sum_probs=226.1
Q ss_pred EEEEecCC-CCEEEEEE-------cCCeEEEEECCCceeEEEEee--cCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 268 TACDYHRG-LDMVVVGF-------SNGVFGLYQMPDFVCIHLLSI--SREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 268 ~~~~~~~~-~~~l~~~~-------~~g~i~~~~~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
.++.|+|- .++|+++. .+|.+.|.++...+-+..... -.+.+..++|++.....+.++..||.+++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46777773 23444433 358999999965554444332 346789999999988877777777999999965
Q ss_pred C-ceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC-CCEEEEEeCCCc
Q 038577 338 S-ESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN-NHSLLSASLDGT 414 (860)
Q Consensus 338 ~-~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg~ 414 (860)
. ..++..++.|..+|.++.|++. +..+++++.|++|++|+...+..+.++.+|...|....|+|. .+.+++++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 4 3567777899999999999984 557788899999999999999999999999999999999994 578999999999
Q ss_pred EEEEEccccceeeEeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCC-CCE
Q 038577 415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPT-NAT 491 (860)
Q Consensus 415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~ 491 (860)
+++||++.......+..+. ..+.++.++.-. +.+++|+.|+ .|+.||++.- .++..+.+|.-.|..+.|||. ...
T Consensus 172 l~lwdvr~~gk~~~i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~-~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHN-SEILCCDWSKYNHNVLATGGVDN-LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEecc-ceeEeecccccCCcEEEecCCCc-eEEEEehhhccccceeecCCceEEEEEecCcchhhH
Confidence 9999998765544455544 688899988754 5667777777 9999999874 567888999999999999996 467
Q ss_pred EEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeC
Q 038577 492 LASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDP 548 (860)
Q Consensus 492 l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~ 548 (860)
||+++.|=+++|||...+....+.. .|..-+..+.||+ ++.++|+++-|+.++||+.
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999999998665444444 5777788899998 6779999999999999984
No 96
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=243.54 Aligned_cols=251 Identities=20% Similarity=0.356 Sum_probs=210.5
Q ss_pred EEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------------------------C------
Q 038577 341 YILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--------------------------------G------ 381 (860)
Q Consensus 341 ~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--------------------------------~------ 381 (860)
..+.+. .|.+.|.++.||+||++||+|+.||.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 334455 8999999999999999999999999999997644 0
Q ss_pred ----------------------eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEE
Q 038577 382 ----------------------FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVS 439 (860)
Q Consensus 382 ----------------------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 439 (860)
+++..+.+|.+.|.++.|+.++ +|++++.|.+|++|++....+++.|... ..|+|
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~Hn--dfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHN--DFVTC 414 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecC--CeeEE
Confidence 1223456799999999999876 8999999999999999999999998754 48999
Q ss_pred EEECC-CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--
Q 038577 440 LASDQ-SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-- 516 (860)
Q Consensus 440 ~~~~~-~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-- 516 (860)
++|+| |.+++++|+-|+ .++||++...+.+.-...+ .-|++++|+|||+..+.|+.+|.+++|+....+......
T Consensus 415 VaFnPvDDryFiSGSLD~-KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDG-KVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEecccCCCcEeeccccc-ceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 99999 678999999999 9999999987777665544 789999999999999999999999999998776433222
Q ss_pred c------cCCCeEEEEEeeC-CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEE
Q 038577 517 P------HTHDVLTVVYRPD-GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCY 589 (860)
Q Consensus 517 ~------~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 589 (860)
. ....|+.+.|.|. ...+++.+.|..|+|||.++.+++..+++.... ..-....|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~------------------~SQ~~Asf 554 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT------------------SSQISASF 554 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC------------------CcceeeeE
Confidence 1 1237999999984 346888889999999999999999999987753 22467789
Q ss_pred ecCCCEEEEecCCCeEEEEECCCce
Q 038577 590 SADGSYILAGGSSKYICMYDVADQV 614 (860)
Q Consensus 590 s~~g~~l~~~~~dg~v~vwd~~~~~ 614 (860)
+.||++|+++++|..|++|+.+...
T Consensus 555 s~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 555 SSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ccCCCEEEEeecCceEEEEeCCCCc
Confidence 9999999999999999999986544
No 97
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=4.8e-27 Score=226.10 Aligned_cols=290 Identities=19% Similarity=0.328 Sum_probs=232.8
Q ss_pred eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEe-cCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQ-QGHYFDVNCLAYSPDSQLLATGADDN 371 (860)
Q Consensus 297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg 371 (860)
.....++.+...|.++++.|.|..+++++-+ ..|++||...... ...+ +.....|.+++|++.|..|++.+...
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~D-y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLD-YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeecccc-ceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 3445677888899999999999999999877 9999999875422 1122 23445699999999999999999889
Q ss_pred cEEEEECCCCeeEEE-------------eecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEee-----CC
Q 038577 372 KVKVWTVSSGFCFVT-------------FTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFT-----TP 432 (860)
Q Consensus 372 ~i~iwd~~~~~~~~~-------------~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~ 432 (860)
..+++|-. |..+.. -++|...+++.+|+|+. ..+++++.||++++||+.+.+....+. ..
T Consensus 237 qakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 237 QAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred ceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 99999954 433332 24689999999999976 578999999999999998765433322 23
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce---EEEecCccc--CeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577 433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL---LDILSGHEG--PVHGLVFSPTNATLASSSWDKTVRLWNVF 507 (860)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~---~~~~~~h~~--~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 507 (860)
....++.++|+++|+.+|+|+.|| .|++|+..+... ...-.+|.. .|+++.||+||++|++-+.|+++++||++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DG-SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDG-SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred cccCceeeecCCCcchhhhcccCC-ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 345688999999999999999999 999999854322 334457876 89999999999999999999999999998
Q ss_pred CCcceeEEc---ccCCCeEEEEEeeCCCEEEEEeC------CCeEEEEeCCCCceeEEEecccccCCCcccccccccccc
Q 038577 508 EGKGSVESF---PHTHDVLTVVYRPDGRQLACSTL------DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANS 578 (860)
Q Consensus 508 ~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (860)
..+...... ....+-+.++|||+.+++++|+. .|.+.+||..+.+.++.+.....
T Consensus 395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a---------------- 458 (641)
T KOG0772|consen 395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA---------------- 458 (641)
T ss_pred ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc----------------
Confidence 876443322 34556788999999999999853 57899999999999988876532
Q ss_pred CCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 579 SSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 579 ~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
.|..+.|.|.=+.|++|+.||.+++|=
T Consensus 459 ----Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 459 ----SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ----eEEEEeecchhhheeeecCCCceEEEE
Confidence 589999999999999999999999874
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=209.57 Aligned_cols=303 Identities=17% Similarity=0.241 Sum_probs=215.2
Q ss_pred EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA 213 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~ 213 (860)
+..+.+|.+.|++++|+.||++||+++.|+.|++|+++.-...........+ .-+..+.+.|+||-+. .++++-
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dhpT~V~FapDc~s----~vv~~~ 152 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDHPTRVVFAPDCKS----VVVSVK 152 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCCceEEEECCCcce----EEEEEc
Confidence 4578899999999999999999999999999999999875111110111111 2235678899999873 555666
Q ss_pred CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEEC
Q 038577 214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQM 293 (860)
Q Consensus 214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~ 293 (860)
...++++|.+..... .......+ -||-
T Consensus 153 ~g~~l~vyk~~K~~d----------------------------------G~~~~~~v-------------------~~D~ 179 (420)
T KOG2096|consen 153 RGNKLCVYKLVKKTD----------------------------------GSGSHHFV-------------------HIDN 179 (420)
T ss_pred cCCEEEEEEeeeccc----------------------------------CCCCcccc-------------------cccc
Confidence 667888887765321 00000000 0110
Q ss_pred CCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577 294 PDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKV 373 (860)
Q Consensus 294 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 373 (860)
...-+.|.-.+..+-....+.++++++.+ ..|.+|+++ |+.+..+......-+..+.||+|+++++++-.-.|
T Consensus 180 -----~~f~~kh~v~~i~iGiA~~~k~imsas~d-t~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDV 252 (420)
T KOG2096|consen 180 -----LEFERKHQVDIINIGIAGNAKYIMSASLD-TKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDV 252 (420)
T ss_pred -----cccchhcccceEEEeecCCceEEEEecCC-CcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCc
Confidence 00001122233334444455566655554 788888888 77777766656666778999999999999998899
Q ss_pred EEEECC---CC-----eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc-------cceeeEee---CCCCC
Q 038577 374 KVWTVS---SG-----FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR-------YRNFRTFT---TPSSR 435 (860)
Q Consensus 374 ~iwd~~---~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-------~~~~~~~~---~~~~~ 435 (860)
++|.+- .| ..+..+.+|.+.|..++|+++...+++.+.||++++||..- .+.++... .....
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~ 332 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS 332 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC
Confidence 999863 22 34567889999999999999999999999999999999842 12222221 12233
Q ss_pred cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 436 QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-SGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
....++++|.|..|+++... .+++|..++|+....+ ..|...|.+++|+++|+++++++ |+.++++.
T Consensus 333 ~p~RL~lsP~g~~lA~s~gs--~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 333 EPVRLELSPSGDSLAVSFGS--DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CceEEEeCCCCcEEEeecCC--ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 45689999999999988766 6999999998877665 46899999999999999999998 77788875
No 99
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2e-28 Score=225.26 Aligned_cols=291 Identities=16% Similarity=0.260 Sum_probs=245.8
Q ss_pred EEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577 132 ELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 132 ~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
+.+..+.||.+.|.|++=.|.. ..+++|+.||.|++||+... .+...+..|.+.|.++++.. . .++
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------~~~~~f~AH~G~V~Gi~v~~--~-----~~~ 123 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------ECIRTFKAHEGLVRGICVTQ--T-----SFF 123 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh------hhhheeecccCceeeEEecc--c-----ceE
Confidence 3467789999999999999987 78999999999999999988 77899999999999999987 3 799
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~ 290 (860)
+++.|.+|+.|.++.... .. ....+.+..+.-+..++.+++++. .|.|
T Consensus 124 tvgdDKtvK~wk~~~~p~-----------------------------~t-ilg~s~~~gIdh~~~~~~FaTcGe--~i~I 171 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPPL-----------------------------HT-ILGKSVYLGIDHHRKNSVFATCGE--QIDI 171 (433)
T ss_pred EecCCcceeeeeccCCcc-----------------------------ee-eeccccccccccccccccccccCc--eeee
Confidence 999999999998876210 00 112234555555555666666654 5899
Q ss_pred EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD 370 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 370 (860)
||.....++..+.-..+.|.++.|+|....++.++..|+.|.+||++.+.++.+..- ...-+.++|+|.+-.+++|+.|
T Consensus 172 WD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 172 WDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred cccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccc
Confidence 999999999999999999999999999999998888889999999999988776532 3345689999988889999999
Q ss_pred CcEEEEECCC-CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEE
Q 038577 371 NKVKVWTVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVI 449 (860)
Q Consensus 371 g~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 449 (860)
..++.||++. ..++....+|.++|.++.|+|.|+-+++|+.|.+|++|..+.+.............+.++.+|.|.+++
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEE
Confidence 9999999975 356777889999999999999999999999999999999988877666666666789999999999999
Q ss_pred EEEecCCCeEEEEECCCCce
Q 038577 450 CAGTLDSFEIFVWSMKTGRL 469 (860)
Q Consensus 450 ~~~~~~~~~i~v~d~~~~~~ 469 (860)
++|+.|+ .|++|.....+.
T Consensus 331 ~SGSdd~-nvRlWka~Asek 349 (433)
T KOG0268|consen 331 ISGSDDG-NVRLWKAKASEK 349 (433)
T ss_pred EecCCCc-ceeeeecchhhh
Confidence 9999999 999998765443
No 100
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.4e-26 Score=242.91 Aligned_cols=281 Identities=28% Similarity=0.465 Sum_probs=252.1
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEE-EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577 263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL-LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY 341 (860)
Q Consensus 263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~ 341 (860)
+...+.+..+. ...+++++.++.|.+|+..++..+.. +.+|.+.+.++++..-+..+++++.+ .++++||..++.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D-~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD-KTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecC-CcEEeEecCCCcE
Confidence 45667788777 66899999999999999999999888 99999999999999866666666655 9999999999999
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF 421 (860)
Q Consensus 342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 421 (860)
...+.+|...|.++...+ ..+++|+.|.+|++|+++++..+..+.+|.++|.++..+ +.++++|+.|++|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 999999999999998754 478889999999999999999999999999999999987 6799999999999999999
Q ss_pred ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 422 RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKT 500 (860)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 500 (860)
++++++.+.. +...|.++.+.+. ..++.|+.|+ .|++||+.+. +++..+.+|..-+.++.+ .+++|++++.|++
T Consensus 360 ~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~-~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~ 434 (537)
T KOG0274|consen 360 TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDT-TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT 434 (537)
T ss_pred hceeeeeecC-CcceEEEEEecCc-ceEEeeeecc-ceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc
Confidence 9999999988 6678999988776 8899999998 9999999999 999999999999977766 6889999999999
Q ss_pred EEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 038577 501 VRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557 (860)
Q Consensus 501 i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 557 (860)
|++||..++++...... |...|..+++. ...+++++.||.+++||+++++....+
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999998877777 66888888886 457888999999999999999988766
No 101
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.3e-27 Score=205.95 Aligned_cols=278 Identities=17% Similarity=0.254 Sum_probs=217.8
Q ss_pred eEEEEcC--CCCEEEEE-------cCCCcEEEEEcccCeEEE---EeecCCceeEEEECCCC--CEEEEEeCCeEEEEeC
Q 038577 56 CRIAVSP--DGTFLLTV-------DENQRCHFINLHCHVVLH---RVRFKYPVNAILFSPNG--KYIAVGTGKLVQIWRS 121 (860)
Q Consensus 56 ~~va~sp--dg~~la~~-------~~d~~i~vwd~~~~~~~~---~~~~~~~v~~~~fspdg--~~la~~~~~~i~iwd~ 121 (860)
.++.||| +++ ||++ ...|++.|-++..++-+. .+.....+.+++|++.. ..+++.+||++++||.
T Consensus 12 ysvqfSPf~~nr-LavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENR-LAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccch-hheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 5788998 333 4433 236899999986544444 34467889999999865 4444459999999996
Q ss_pred CCCCcccceeEEEEEeeccCCCeEEEEEcCC-CCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccC
Q 038577 122 PGFKKEVFAFELIRTLADCNDKVTALNWSPD-SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD 200 (860)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 200 (860)
..... +++.++.|...|.++.|++- ...+++++-|++|++|+...+ ....++.||...|....|+|.
T Consensus 91 ~~~s~------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~ 158 (311)
T KOG0277|consen 91 TMPSK------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP------NSVQTFNGHNSCIYQAAFSPH 158 (311)
T ss_pred CCCCc------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC------cceEeecCCccEEEEEecCCC
Confidence 65443 57889999999999999984 456778899999999999887 668889999999999999997
Q ss_pred CCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEE
Q 038577 201 KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVV 280 (860)
Q Consensus 201 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 280 (860)
..+ .+++++.|+++++||++...
T Consensus 159 ~~n----lfas~Sgd~~l~lwdvr~~g----------------------------------------------------- 181 (311)
T KOG0277|consen 159 IPN----LFASASGDGTLRLWDVRSPG----------------------------------------------------- 181 (311)
T ss_pred CCC----eEEEccCCceEEEEEecCCC-----------------------------------------------------
Confidence 664 88899999999999876521
Q ss_pred EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc-eEEEEecCcccCeEEEEEcC
Q 038577 281 VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-SYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 281 ~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~ 359 (860)
+.+ .+..|...+.++.|+.-...++++++.|+.|+.||++.- .++..+.+|.-.|+.++|||
T Consensus 182 ----------------k~~-~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 182 ----------------KFM-SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred ----------------cee-EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 111 134445566777777766666666677789999998764 45677789999999999999
Q ss_pred C-CCEEEEEeCCCcEEEEECCCC-eeEEEeecCCCceEEEEEee-CCCEEEEEeCCCcEEEEEc
Q 038577 360 D-SQLLATGADDNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMA-NNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 360 ~-~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~ 420 (860)
. ...|++++.|-++++||...+ ..+.+...|+.-+..+.|++ ++.++++++.|+.+.+|+.
T Consensus 245 h~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 245 HHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 6 458899999999999999844 45566777888999999987 4578999999999999984
No 102
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=205.30 Aligned_cols=244 Identities=18% Similarity=0.276 Sum_probs=213.3
Q ss_pred EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC--EEEEEeCCCcEEEE
Q 038577 299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVW 376 (860)
Q Consensus 299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw 376 (860)
+..+..|...+++++.+ +.++++++.+ -+|+|||++....+..+..|.+.|+++.|.++-. .|++|+.||.|.+|
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssD-etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSD-ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCC-CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 45567788899999885 6888888776 8999999999999999999999999999999875 89999999999999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (860)
+.....++..+++|.+.|+.++++|.++..++.+.|+.++.|++-+++.-......... ..+.|+|.|.+++++..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEecc-
Confidence 99999999999999999999999999999999999999999999999877766665543 448999999999999888
Q ss_pred CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEE--eeCCCEE
Q 038577 457 FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVY--RPDGRQL 534 (860)
Q Consensus 457 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l 534 (860)
.|-+|.+.+.+....+.. ...+.++.|- ++..|++|+.|+.|.+||..+..+...+.+|...|.++.+ .|++.+|
T Consensus 190 -~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred -EEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 599999988777665542 2456677665 6778999999999999999988888888999999999984 3578899
Q ss_pred EEEeCCCeEEEEeCCCC
Q 038577 535 ACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 535 ~~~~~dg~i~iwd~~~~ 551 (860)
++++.||.|++||++..
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 99999999999999765
No 103
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=235.78 Aligned_cols=247 Identities=18% Similarity=0.301 Sum_probs=196.0
Q ss_pred EecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCc
Q 038577 344 KQQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSG-------FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGT 414 (860)
Q Consensus 344 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~ 414 (860)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++ ..+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 3568999999999999 8899999999999999999764 3567888999999999999985 68999999999
Q ss_pred EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC-eEEEEEcCCCCEEE
Q 038577 415 VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP-VHGLVFSPTNATLA 493 (860)
Q Consensus 415 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~ 493 (860)
|++||+.+++....+.. +...+.+++|+|+|.++++++.|+ .|++||+++++.+..+.+|.+. +..+.|.+++..++
T Consensus 150 VrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg-~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDK-KLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred EEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCC-EEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 99999999887776654 445799999999999999999999 9999999999999999999765 45678999888877
Q ss_pred EEe----CCCcEEEEEccCCcceeEEc--ccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCceeEEEecccccCCC
Q 038577 494 SSS----WDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGELMYTIEGRRDISGG 566 (860)
Q Consensus 494 s~~----~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 566 (860)
+++ .|+.|++||+++........ .....+....|++++++|++++ .||.|++||+.++++.........
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~---- 303 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSV---- 303 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCC----
Confidence 654 47899999998765443332 2344566778999999999887 599999999999987776544321
Q ss_pred ccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
.++..++|.|.-. +-...--..++|.+...
T Consensus 304 ---------------~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 304 ---------------EPHKGLCMMPKWS--LDTRKCEIARFYALTYH 333 (493)
T ss_pred ---------------CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence 2467888888432 11111223466666543
No 104
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.1e-26 Score=205.14 Aligned_cols=270 Identities=19% Similarity=0.254 Sum_probs=217.6
Q ss_pred ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-ceEEEE-ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577 304 ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-ESYILK-QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381 (860)
Q Consensus 304 ~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 381 (860)
...+.|.+++|||....++++++-||+|++|+++. +..+.+ ...|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 45678999999998777887777779999999987 343332 3578999999999999999999999999999999999
Q ss_pred eeEEEeecCCCceEEEEEeeCCC--EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeE
Q 038577 382 FCFVTFTEHTNAVTALHFMANNH--SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEI 459 (860)
Q Consensus 382 ~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 459 (860)
....+..|..+|..+.|-+... .|++|+.|.+|++||.+....+.++..|.. +.+ .+--..+++++..+. .|
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR--vYa--~Dv~~pm~vVata~r-~i 178 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER--VYA--ADVLYPMAVVATAER-HI 178 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce--eee--hhccCceeEEEecCC-cE
Confidence 5566778999999999987665 899999999999999999998888887763 333 344456777888887 89
Q ss_pred EEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc--ceeEEcccC---------CCeEEEE
Q 038577 460 FVWSMKTGRLLDI--LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK--GSVESFPHT---------HDVLTVV 526 (860)
Q Consensus 460 ~v~d~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~---------~~v~~~~ 526 (860)
.+|+++.+..... -..-.-.+++++..+|....+.|+-+|.+.+..+..+. ....+.-|. -.|++++
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9999986543221 11223458899999998888999999999999998763 222233232 2478899
Q ss_pred EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe
Q 038577 527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG 599 (860)
Q Consensus 527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 599 (860)
|+|.-..|++++.||++.+||-+....+.+.+.+.. +|++.+|+.+|.+++.+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--------------------pItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--------------------PITCCSFNRNGSIFAYA 311 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCC--------------------ccceeEecCCCCEEEEE
Confidence 999999999999999999999888877777666654 69999999999988865
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.7e-27 Score=232.84 Aligned_cols=341 Identities=16% Similarity=0.246 Sum_probs=275.7
Q ss_pred CCCCEEEEEEcCCeEEEEECCCce------eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEe
Q 038577 274 RGLDMVVVGFSNGVFGLYQMPDFV------CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQ 345 (860)
Q Consensus 274 ~~~~~l~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~ 345 (860)
|.+++|++|+.||.|++|+..... .+..++.|.+.+..++...+|+.+++++.+ .+|++|+...+ -+...+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsD-tTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSD-TTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCC-ceEEEeecccCcchhHhhh
Confidence 566789999999999999986432 356778899999999999999999988876 99999999877 566677
Q ss_pred cCcccCeEEEEE-cCCCCEEEEEeCCCcEEEEECCCCee--E--------EEee-cCCCceEEEEEeeCCCEEEEEeCCC
Q 038577 346 QGHYFDVNCLAY-SPDSQLLATGADDNKVKVWTVSSGFC--F--------VTFT-EHTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 346 ~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~--~--------~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
..|...|.|+++ .++...+|+|+-|+.|.+||++++.. + ..+. ++..+|.+++.++.|..+++|+..+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 889999999999 88888999999999999999997722 2 2223 6888999999999999999999999
Q ss_pred cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEE
Q 038577 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLA 493 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 493 (860)
.+++||.++.+.+..+. .+...|..+..++||+.+++++.|+ +|++||+...+++.++..|...|+++..+|+-..+.
T Consensus 194 ~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDg-tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDG-TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred ceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCc-eEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 99999999999888888 6667899999999999999999999 999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCC-----cc
Q 038577 494 SSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGG-----RL 568 (860)
Q Consensus 494 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~ 568 (860)
+|+.||.|..=|+.+......+.....+|..+..+...+-+-+++.|+.|+-|-..-.. .+....+.... ..
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~---~l~~s~~~~~~~T~~~~~ 348 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI---ALSVSGDLDFFSTDSNNH 348 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc---ccccCCCCCcccccCCCc
Confidence 99999999999999876566666777888888888655555777889999999754222 11111111000 00
Q ss_pred cccccc--ccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577 569 MTDRRS--AANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ 620 (860)
Q Consensus 569 ~~~~~~--~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~ 620 (860)
...... ......+.+|..-+.-.|.+++++-...|.+.+||+-....+..|.
T Consensus 349 ~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g 402 (735)
T KOG0308|consen 349 SCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG 402 (735)
T ss_pred cccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence 000000 0012234456666777789999999999999999998888776665
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.1e-26 Score=217.22 Aligned_cols=276 Identities=21% Similarity=0.381 Sum_probs=231.8
Q ss_pred EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE----EE------------e--cCcccCeEEEEEcCC
Q 038577 299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI----LK------------Q--QGHYFDVNCLAYSPD 360 (860)
Q Consensus 299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~----~~------------~--~~~~~~v~~~~~s~~ 360 (860)
...+..|..++.+++++|++.+.+.++.+ |+|.-|+..++... .. . ..|...+.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~-g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKD-GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCC-cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 45666788899999999999999988776 99999998877632 00 1 268888999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEE
Q 038577 361 SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSL 440 (860)
Q Consensus 361 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~ 440 (860)
|++||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....+++++.|+++++|++.....+.++..+. ..+..+
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHq-d~v~~I 292 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQ-DGVLGI 292 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCc-cceeee
Confidence 9999999999999999999999999999999999999999888899999999999999998877776665544 478888
Q ss_pred EECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-c--
Q 038577 441 ASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-P-- 517 (860)
Q Consensus 441 ~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-- 517 (860)
....-++.+.+|+.|. ++++|++. .+....+.+|.+.+-|++|- +...+++|+.+|.|.+|++...+++.... +
T Consensus 293 daL~reR~vtVGgrDr-T~rlwKi~-eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDR-TVRLWKIP-EESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred chhcccceEEeccccc-eeEEEecc-ccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeecccc
Confidence 8888899999999999 99999994 44556678899999999998 45679999999999999998877654332 1
Q ss_pred ---------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC----ceeEEEecccccCCCccccccccccccCCCCcE
Q 038577 518 ---------HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG----ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCF 584 (860)
Q Consensus 518 ---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 584 (860)
++..|++++..|...++|+|+.+|.|++|-+.++ +++..+... +.|
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---------------------GfV 428 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---------------------GFV 428 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---------------------cEE
Confidence 2237999999999999999999999999999887 333333321 359
Q ss_pred EEEEEecCCCEEEEec
Q 038577 585 TTLCYSADGSYILAGG 600 (860)
Q Consensus 585 ~~l~~s~~g~~l~~~~ 600 (860)
++++|+++|+++++|-
T Consensus 429 Nsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 429 NSLAFSNSGKRIVAGI 444 (479)
T ss_pred EEEEEccCCCEEEEec
Confidence 9999999999777663
No 107
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.6e-25 Score=233.04 Aligned_cols=244 Identities=14% Similarity=0.298 Sum_probs=193.5
Q ss_pred CCcEEEEEccCceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCe--------eEEEeecCCCceEEEE
Q 038577 328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGF--------CFVTFTEHTNAVTALH 398 (860)
Q Consensus 328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~i~ 398 (860)
.+.+.+|+......+..+.+|...|.+++|+|+ +.+|++|+.||.|++||+.++. .+..+.+|...|.+++
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 478999998888888888999999999999997 7899999999999999997542 3446788999999999
Q ss_pred EeeCCCE-EEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc
Q 038577 399 FMANNHS-LLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE 477 (860)
Q Consensus 399 ~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~ 477 (860)
|+|++.. +++++.|+.|++||+.+++....+.. ...+.+++|+|+|.++++++.|+ .|++||+++++.+..+.+|.
T Consensus 133 f~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~-~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 133 WNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGK-HMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred ECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCC-EEEEEECCCCcEEEEEeccc
Confidence 9998875 56899999999999999887666643 35789999999999999999888 99999999999999999998
Q ss_pred cCeEEE-----EEcCCCCEEEEEeCCC----cEEEEEccCCcceeEEcc---cCCCeEEEEEeeCCCEEEEEeCCCeEEE
Q 038577 478 GPVHGL-----VFSPTNATLASSSWDK----TVRLWNVFEGKGSVESFP---HTHDVLTVVYRPDGRQLACSTLDGQIHF 545 (860)
Q Consensus 478 ~~v~~l-----~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~dg~i~i 545 (860)
+.+... .|++++.++++++.|+ +|++||++.......... +.+.+......++|.++++|..|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 875443 3468889999988774 799999986433333333 2333334444556889999999999999
Q ss_pred EeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC
Q 038577 546 WDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG 593 (860)
Q Consensus 546 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 593 (860)
|++..+.. ..+.... +..++.+++|.|+.
T Consensus 290 ~e~~~~~~-~~l~~~~------------------s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 290 YQHSLGSI-RKVNEYK------------------SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEccCCcE-Eeecccc------------------cCCCccceEEcccc
Confidence 99987643 2222211 12357889999965
No 108
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=219.78 Aligned_cols=289 Identities=15% Similarity=0.206 Sum_probs=237.6
Q ss_pred EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577 300 HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS 379 (860)
Q Consensus 300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 379 (860)
..+.+|.+.|.+++-+|..-..+++++-||.|++||+....+...+..|.+.|..+++.. ..+++++.|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 445678889999999998844444444559999999999999999999999999999987 678899999999999986
Q ss_pred CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEe-cCCCe
Q 038577 380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGT-LDSFE 458 (860)
Q Consensus 380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 458 (860)
. ..+.++. ..+.+..+.-+..+..++|+|. .|.+||.....+++.+..... .+.++.++|-...+++++ .|+ .
T Consensus 138 ~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~~sDr-s 211 (433)
T KOG0268|consen 138 G-PPLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASCASDR-S 211 (433)
T ss_pred C-Ccceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCC-ceeEEecCCCcchheeeeccCC-c
Confidence 5 3555554 3556777777777778899886 599999998888888877654 688999999887665555 666 9
Q ss_pred EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEE
Q 038577 459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACS 537 (860)
Q Consensus 459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~ 537 (860)
|.+||++++.+++.+. -...-+.|+|+|.+-.++++++|..++.||++..... ....+|.+.|.++.|||.|+-+++|
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 9999999999887765 3455678999998888999999999999999876543 3445799999999999999999999
Q ss_pred eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577 538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616 (860)
Q Consensus 538 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~ 616 (860)
+.|.+|+||..+.+.........+. ..|.++.||.|.+|+++|++|+.|++|.....+.+
T Consensus 291 syDksIRIf~~~~~~SRdiYhtkRM-------------------q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDIYHTKRM-------------------QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred cccceEEEeecCCCcchhhhhHhhh-------------------heeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 9999999999988766555444433 24999999999999999999999999998766544
No 109
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3e-25 Score=233.19 Aligned_cols=252 Identities=14% Similarity=0.230 Sum_probs=197.7
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-------------EEeecCCCceEEEEEee-CCCEEEEEeCCC
Q 038577 348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-------------VTFTEHTNAVTALHFMA-NNHSLLSASLDG 413 (860)
Q Consensus 348 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~i~~~~-~~~~l~s~~~dg 413 (860)
+...|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++++.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 3444555666667666666666666666765433222 23678999999999999 788999999999
Q ss_pred cEEEEEccccc-------eeeEeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 038577 414 TVRAWDLFRYR-------NFRTFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF 485 (860)
Q Consensus 414 ~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~ 485 (860)
+|++||+.+.. .+..+. .+...+.+++|+|++ .+|++++.|+ .|++||+++++.+..+.+|...|.+++|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~Dg-tVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADM-VVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCC-EEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 99999997653 233333 455689999999986 6899999998 9999999999999999999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC-eEEEEEeeCCCEEEEEe----CCCeEEEEeCCCCce-eEEEec
Q 038577 486 SPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD-VLTVVYRPDGRQLACST----LDGQIHFWDPLNGEL-MYTIEG 559 (860)
Q Consensus 486 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~ 559 (860)
+|++.+|++++.|++|++||+++++.......|.+. ...+.|.+++..+++++ .|+.|++||+++... +.....
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 999999999999999999999999877777777654 45778999888887664 478999999987643 322222
Q ss_pred ccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec-CCCeEEEEECCCceEEEEEe
Q 038577 560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG-SSKYICMYDVADQVLLRRFQ 620 (860)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~-~dg~v~vwd~~~~~~~~~~~ 620 (860)
+.. ..+....|++++++|++++ .|+.|++||+.+++++....
T Consensus 257 d~~-------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 257 DQS-------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred CCC-------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 211 1366678999999999888 59999999999998776544
No 110
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.95 E-value=2.6e-25 Score=220.51 Aligned_cols=406 Identities=16% Similarity=0.205 Sum_probs=280.0
Q ss_pred CceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577 94 YPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK 173 (860)
Q Consensus 94 ~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~ 173 (860)
..|..++|-|||..|+.+.++.+.+||.+.|. +..++.+|.+.|.|++|+.||+.+|+|+.|..|.+|.-.-.
T Consensus 13 hci~d~afkPDGsqL~lAAg~rlliyD~ndG~-------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGSRLLVYDTSDGT-------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred cchheeEECCCCceEEEecCCEEEEEeCCCcc-------cccccccccceEEEEEEccCCceeccCCCceeEEEeccccc
Confidence 37999999999999999999999999999987 58999999999999999999999999999999999986543
Q ss_pred ccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEE
Q 038577 174 LKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWG 253 (860)
Q Consensus 174 ~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (860)
...-..|.+.|.++.|.|-.. .|++++-. ..-+|+.+....
T Consensus 86 --------G~LkYSH~D~IQCMsFNP~~h-----~LasCsLs-dFglWS~~qK~V------------------------- 126 (1081)
T KOG1538|consen 86 --------GILKYSHNDAIQCMSFNPITH-----QLASCSLS-DFGLWSPEQKSV------------------------- 126 (1081)
T ss_pred --------ceeeeccCCeeeEeecCchHH-----Hhhhcchh-hccccChhhhhH-------------------------
Confidence 344567999999999999988 88888743 344565543211
Q ss_pred eeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe---ecCceeEEEEEeeCC-----CEEEEEE
Q 038577 254 LLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS---ISREKITTAVFNELG-----NWLVFGC 325 (860)
Q Consensus 254 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~---~~~~~i~~~~~s~~~-----~~l~~~~ 325 (860)
.-......+.+++|..||++++.|..+|+|.+-+- +++....+. +...+|.+++|+|.. ..+++..
T Consensus 127 -----~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D 200 (1081)
T KOG1538|consen 127 -----SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD 200 (1081)
T ss_pred -----HhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe
Confidence 11123457899999999999999999999999976 444433333 356789999999864 2333333
Q ss_pred ccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCE
Q 038577 326 AKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405 (860)
Q Consensus 326 ~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 405 (860)
. +.++.+|.+. |+.+.+-+.-.-...|+.+.++|.+++.|+.|+.+.+|. +.|..+.++......|+.++..|++++
T Consensus 201 W-~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 201 W-GQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred c-cceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCce
Confidence 2 2555555543 344443344445577999999999999999999999997 568888888888889999999999999
Q ss_pred EEEEeCCCcEEEEEccccc---------------------------eee-----------------EeeCCCCCcEEEEE
Q 038577 406 LLSASLDGTVRAWDLFRYR---------------------------NFR-----------------TFTTPSSRQFVSLA 441 (860)
Q Consensus 406 l~s~~~dg~i~~wd~~~~~---------------------------~~~-----------------~~~~~~~~~~~~~~ 441 (860)
++.|+.||+|..|++.... ..+ ....+....+....
T Consensus 278 v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~ 357 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELY 357 (1081)
T ss_pred EEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEecc
Confidence 9999999999999872110 000 00001100000000
Q ss_pred -----------------------ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEE--cCCC-CEEEEE
Q 038577 442 -----------------------SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF--SPTN-ATLASS 495 (860)
Q Consensus 442 -----------------------~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~--s~~~-~~l~s~ 495 (860)
.--.++.++.+. +. .+..+|...-+. +... -.+-|.-+.. -|-| .-|+.|
T Consensus 358 se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCq-ek-rLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vG 433 (1081)
T KOG1538|consen 358 SEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQ-EK-RLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVG 433 (1081)
T ss_pred ccccccchhHHHHHHHhhccceEEEEEcCeEEEEc-cc-ceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEE
Confidence 000122222222 22 444455432110 0000 0011111111 1222 347778
Q ss_pred eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 038577 496 SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG 559 (860)
Q Consensus 496 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 559 (860)
-.+|.|.-.=+.+.- ..-+......|.++..+...+.||+..+.++..++|+.+++.+..-++
T Consensus 434 lknGqV~kiF~dN~~-PiLl~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~QEpg 496 (1081)
T KOG1538|consen 434 LKNGQVLKIFVDNLF-PILLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQEPG 496 (1081)
T ss_pred ecCCcEEEEEecCCc-hhheecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEeecCC
Confidence 888876543333332 233334567899999999999999999999999999999998876655
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.3e-25 Score=203.12 Aligned_cols=295 Identities=16% Similarity=0.252 Sum_probs=226.5
Q ss_pred ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEE----EEeecCceeEEEEEeeCCCEEEEEEccCCcEEE
Q 038577 258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIH----LLSISREKITTAVFNELGNWLVFGCAKLGQLLV 333 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v 333 (860)
..+.+|...|++++|+.||+.|++.+.|+.|++|++.+..... ......+..+.+.|.||.+.+++.......+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 4567899999999999999999999999999999998754321 112233477899999999999999888789999
Q ss_pred EEccCce---EEE---------EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee
Q 038577 334 WEWRSES---YIL---------KQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA 401 (860)
Q Consensus 334 ~d~~~~~---~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~ 401 (860)
|.+...+ ... ..+.|...+..+-...++.+|++++.|..|.+|++. |+.+..+......-+..+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 9764321 111 113456677778888889999999999999999998 999988887777778889999
Q ss_pred CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577 402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH 481 (860)
Q Consensus 402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~ 481 (860)
+|+++++++---.+++|.+ .|..+|.+ +.-..+..++||...|.
T Consensus 239 ~GRFia~~gFTpDVkVwE~--------------------~f~kdG~f----------------qev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEP--------------------IFTKDGTF----------------QEVKRVFSLKGHQSAVL 282 (420)
T ss_pred CCcEEEEecCCCCceEEEE--------------------EeccCcch----------------hhhhhhheeccchhhee
Confidence 9999999998888999875 11122211 11223456789999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCc-------ceeEE----cccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 482 GLVFSPTNATLASSSWDKTVRLWNVFEGK-------GSVES----FPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
.++|+++.+.+++.+.||++++||++-.. .+... ....+....+.++|+|+.||.+. ...+++|..++
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~ 361 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASED 361 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEccc
Confidence 99999999999999999999999974321 11111 12334455899999999988876 45699999999
Q ss_pred CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
|+....++.-. +..|++++|+++|+++++++ |..+++..-
T Consensus 362 g~~~~~~e~~h-------------------~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 362 GKDYPELEDIH-------------------STTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred CccchhHHHhh-------------------cCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 88776665432 24699999999999999986 455776653
No 112
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=6.4e-26 Score=203.95 Aligned_cols=271 Identities=15% Similarity=0.245 Sum_probs=225.2
Q ss_pred CCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCCc-ee-EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577 262 QAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPDF-VC-IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338 (860)
Q Consensus 262 ~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~-~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~ 338 (860)
.....|.+++|+| ...++++|+-||+|++|++... .. ......+.+++.+++|+.||..+++++.+ +.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-k~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-KQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-CceEEEEccC
Confidence 3456799999999 5566679999999999999763 32 24455678899999999999988888877 9999999999
Q ss_pred ceEEEEecCcccCeEEEEEcCCCC--EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577 339 ESYILKQQGHYFDVNCLAYSPDSQ--LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVR 416 (860)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 416 (860)
+ ....+..|.++|.++.|-+... .|+||+.|.+|+.||++...++.++. -.+.+.++..- ...++.+..++.|.
T Consensus 104 ~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 G-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIA 179 (347)
T ss_pred C-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEE
Confidence 9 4556678999999999988766 89999999999999999888888775 45667766654 34788888999999
Q ss_pred EEEcccc-ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC--ceEEEecCccc---------CeEEEE
Q 038577 417 AWDLFRY-RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG--RLLDILSGHEG---------PVHGLV 484 (860)
Q Consensus 417 ~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~--~~~~~~~~h~~---------~v~~l~ 484 (860)
+|+++.+ ...+....+...++.+++.-++....+.|+-+| .+.+..+..+ +.-..++.|.. .|++|+
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG-rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG-RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc-eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 9999664 445556667777889999999988889999998 9999988876 44455666652 578899
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577 485 FSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST 538 (860)
Q Consensus 485 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 538 (860)
|+|....|+|++.||+..+||-.....+.....|..+|++..|+.+|.++|-+.
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 999999999999999999999888777777788999999999999999887763
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.9e-26 Score=216.68 Aligned_cols=305 Identities=17% Similarity=0.275 Sum_probs=245.6
Q ss_pred ceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee-eEEeeeeccc
Q 038577 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK-KWGLLRKDDF 260 (860)
Q Consensus 182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 260 (860)
......|.-++.+++++|+++ +.++++.+|+|.-|++.++.........+ .. .+ .........
T Consensus 135 ~~~~~~H~~s~~~vals~d~~-----~~fsask~g~i~kw~v~tgk~~~~i~~~~-ev---------~k~~~~~~k~~r- 198 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDK-----RVFSASKDGTILKWDVLTGKKDRYIIERD-EV---------LKSHGNPLKESR- 198 (479)
T ss_pred ceeeccccCcceEEEeecccc-----ceeecCCCcceeeeehhcCcccccccccc-hh---------hhhccCCCCccc-
Confidence 466778999999999999999 99999999999999998875421111110 00 00 000000111
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~ 340 (860)
..|...+.+++.++||++|++|..|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.+ ..+++|+++...
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D-rsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD-RSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC-CceEEEehhHhH
Confidence 3788899999999999999999999999999999999999999999999999999988888888776 999999999999
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
.+.++.+|...|..+....-++.+-+|+.|+++++|++.. .....+.+|.+.+-|++|-.+. .+++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeee
Confidence 9999999999999999998888888888999999999954 3444677889999999997654 8999999999999999
Q ss_pred cccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 421 FRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT 500 (860)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 500 (860)
.+.+++.....++... |+. ... .+...|++++..|...++|+|+.+|.
T Consensus 356 ~KKkplf~~~~AHgv~-------~~~------------------------~~~-~~~~Witsla~i~~sdL~asGS~~G~ 403 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVI-------PEL------------------------DPV-NGNFWITSLAVIPGSDLLASGSWSGC 403 (479)
T ss_pred cccCceeEeecccccc-------CCc------------------------ccc-ccccceeeeEecccCceEEecCCCCc
Confidence 9888777766555311 100 001 13368999999999999999999999
Q ss_pred EEEEEccCCcc---eeEEcccCCCeEEEEEeeCCCEEEEE
Q 038577 501 VRLWNVFEGKG---SVESFPHTHDVLTVVYRPDGRQLACS 537 (860)
Q Consensus 501 i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~ 537 (860)
|++|-+..+-. +.......+-|++++|+++|+.+++|
T Consensus 404 vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 404 VRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred eEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 99999988832 22333577889999999999977666
No 114
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=236.10 Aligned_cols=289 Identities=17% Similarity=0.263 Sum_probs=213.9
Q ss_pred cccc-CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC----------ceeEEEEEee---CCCEEEE
Q 038577 258 DDFS-QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR----------EKITTAVFNE---LGNWLVF 323 (860)
Q Consensus 258 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~----------~~i~~~~~s~---~~~~l~~ 323 (860)
+.+. .|.+.|.++.|++||++||+|+.||.|+||.+...+....-.... ..+..+..++ .++....
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3444 789999999999999999999999999999986532211100000 0000000111 0000000
Q ss_pred E-EccCCcEEEEEcc----CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577 324 G-CAKLGQLLVWEWR----SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398 (860)
Q Consensus 324 ~-~~~~g~i~v~d~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 398 (860)
- +..... .+.+.. ..+++..+.+|.+.|..+.||.++ +|++++.|.+|++|++....++..|. |.+-|+|++
T Consensus 340 ~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCcc-ccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEE
Confidence 0 000011 111111 234566778999999999999775 89999999999999999999999995 999999999
Q ss_pred Eee-CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--
Q 038577 399 FMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-- 475 (860)
Q Consensus 399 ~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-- 475 (860)
|+| |.+++++|+-||.+++|++...+...-.... .-|+++++.|+|+..++|+.+| ..++|+....++.....-
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~--~lITAvcy~PdGk~avIGt~~G-~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR--DLITAVCYSPDGKGAVIGTFNG-YCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhh--hhheeEEeccCCceEEEEEecc-EEEEEEccCCeEEEeeeEee
Confidence 999 6789999999999999999877665544443 5789999999999999999999 999999998776654321
Q ss_pred c------ccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeEEccc--CCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577 476 H------EGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVESFPH--THDVLTVVYRPDGRQLACSTLDGQIHFW 546 (860)
Q Consensus 476 h------~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iw 546 (860)
| ...|+++.|.|.. ..+++.+.|..|||||.++...+..+.++ ...-....|+.||++++++++|..|++|
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 1 2379999999854 35777788999999999877766666643 2334667899999999999999999999
Q ss_pred eCCCCc
Q 038577 547 DPLNGE 552 (860)
Q Consensus 547 d~~~~~ 552 (860)
+.....
T Consensus 574 ~~~~~~ 579 (712)
T KOG0283|consen 574 KNDSFN 579 (712)
T ss_pred eCCCCc
Confidence 986543
No 115
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.95 E-value=3.8e-25 Score=218.07 Aligned_cols=443 Identities=18% Similarity=0.252 Sum_probs=293.3
Q ss_pred CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC-CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE
Q 038577 114 KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP-DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV 192 (860)
Q Consensus 114 ~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i 192 (860)
+.+-|.-+...... .+-+..+.+|.+.|+.+.|+| +..+||+++.|..|+||.+..+...........+.+..-.+
T Consensus 55 ~~lgvlPl~~~Gr~---~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~v 131 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGRR---TRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIV 131 (1012)
T ss_pred ceEEEEeccccCcc---ccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEE
Confidence 45555555432211 113567789999999999999 44689999999999999998552221112233444555667
Q ss_pred EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577 193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY 272 (860)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 272 (860)
.++.|+|... -|+..+..|.+++||+.++.. ...+.+|...|.++.|
T Consensus 132 E~l~fHpTaD-----gil~s~a~g~v~i~D~stqk~----------------------------~~el~~h~d~vQSa~W 178 (1012)
T KOG1445|consen 132 ECLRFHPTAD-----GILASGAHGSVYITDISTQKT----------------------------AVELSGHTDKVQSADW 178 (1012)
T ss_pred EEeecccCcC-----ceEEeccCceEEEEEcccCce----------------------------eecccCCchhhhcccc
Confidence 8899999887 677777889999999998643 3445678899999999
Q ss_pred cCCCCEEEEEEcCCeEEEEECC-CceeEEEEeecCce-eEEEEEeeCCCEEEEEEcc---CCcEEEEEccCc-eEEEEec
Q 038577 273 HRGLDMVVVGFSNGVFGLYQMP-DFVCIHLLSISREK-ITTAVFNELGNWLVFGCAK---LGQLLVWEWRSE-SYILKQQ 346 (860)
Q Consensus 273 ~~~~~~l~~~~~~g~i~~~~~~-~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~-~~~~~~~ 346 (860)
+.||..+++.+.|.+|+|||.. .++.++....|.+. -..+.|.-+-..|++++-+ -..+++||.+.. ..+..+.
T Consensus 179 seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tle 258 (1012)
T KOG1445|consen 179 SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLE 258 (1012)
T ss_pred ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEE
Confidence 9999999999999999999986 45667777666542 3345665555566666543 256889987653 2222221
Q ss_pred -CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEE------------------------Eee------------
Q 038577 347 -GHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFV------------------------TFT------------ 388 (860)
Q Consensus 347 -~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~------------------------~~~------------ 388 (860)
.....|.---|.||.++++.++. +.++..+.+....... .+.
T Consensus 259 ld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~ 338 (1012)
T KOG1445|consen 259 LDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKS 338 (1012)
T ss_pred eecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccC
Confidence 11222444456777666554443 5556666543211000 000
Q ss_pred ---------------------------------------cCCCceEEE--------------------------------
Q 038577 389 ---------------------------------------EHTNAVTAL-------------------------------- 397 (860)
Q Consensus 389 ---------------------------------------~~~~~v~~i-------------------------------- 397 (860)
+.+..|..+
T Consensus 339 ~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~ 418 (1012)
T KOG1445|consen 339 SIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVP 418 (1012)
T ss_pred ceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCcccc
Confidence 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 038577 398 -------------------------------------------------------------------------------- 397 (860)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (860)
T Consensus 419 ~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S 498 (1012)
T KOG1445|consen 419 TPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPAS 498 (1012)
T ss_pred CCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 038577 398 -------------------------------------------------------------------------------- 397 (860)
Q Consensus 398 -------------------------------------------------------------------------------- 397 (860)
T Consensus 499 ~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~ 578 (1012)
T KOG1445|consen 499 TPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNT 578 (1012)
T ss_pred cccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccc
Confidence
Q ss_pred -------EEeeCCCEEE--EEeCCCcEEEEEccccceeeE--e-eCCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEEC
Q 038577 398 -------HFMANNHSLL--SASLDGTVRAWDLFRYRNFRT--F-TTPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSM 464 (860)
Q Consensus 398 -------~~~~~~~~l~--s~~~dg~i~~wd~~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~ 464 (860)
-|+.+..+++ .+|..|.|.+|+++....+.. + .......++.+.|+| |...|++++.++ .|.+|.+
T Consensus 579 ~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg-~i~lWr~ 657 (1012)
T KOG1445|consen 579 RLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDG-QINLWRL 657 (1012)
T ss_pred cCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCc-eEEEEEe
Confidence 0000000111 112223333444332111100 0 011234577888888 667899999998 9999998
Q ss_pred CCC-------ceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE
Q 038577 465 KTG-------RLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC 536 (860)
Q Consensus 465 ~~~-------~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 536 (860)
..+ .+...+.+|...|+++.|+|- ...|+++++|-+|++||+.+.+....+.+|.+.|..++|||||+.+|+
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence 754 345678899999999999994 578999999999999999999988889999999999999999999999
Q ss_pred EeCCCeEEEEeCCCCce-eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC----CeEEEEECC
Q 038577 537 STLDGQIHFWDPLNGEL-MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS----KYICMYDVA 611 (860)
Q Consensus 537 ~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d----g~v~vwd~~ 611 (860)
.+.||+|++|+..+++. ++.-++... ..-..+.|--||+++++.+-| ..|.+||..
T Consensus 738 VcKDg~~rVy~Prs~e~pv~Eg~gpvg-------------------tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQPVYEGKGPVG-------------------TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred eecCceEEEeCCCCCCCccccCCCCcc-------------------CcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 99999999999987743 333322221 223567788899999988765 467788776
Q ss_pred C
Q 038577 612 D 612 (860)
Q Consensus 612 ~ 612 (860)
+
T Consensus 799 ~ 799 (1012)
T KOG1445|consen 799 T 799 (1012)
T ss_pred h
Confidence 5
No 116
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.95 E-value=3.8e-25 Score=219.38 Aligned_cols=475 Identities=12% Similarity=0.125 Sum_probs=326.0
Q ss_pred cCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec
Q 038577 14 RGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF 92 (860)
Q Consensus 14 ~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~ 92 (860)
+..+++|- ||.-|+.+.|+++.+||+..|.+...+.+|...|.|+|||.||+++|+|+.|..|++|+-+ -+-+-+..|
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceeeecc
Confidence 55679999 9999999999999999999999999999999999999999999999999999999999854 333445569
Q ss_pred CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecc
Q 038577 93 KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE 172 (860)
Q Consensus 93 ~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~ 172 (860)
...|.|+.|+|-...||+++-+..-+|....... .. ......|.+.+|..||++++.|-.+|+|.+-+...
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V--------~K-~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSV--------SK-HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhH--------Hh-hhhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 9999999999999999999888888998765431 11 11245688999999999999999999999986554
Q ss_pred cccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeE
Q 038577 173 KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW 252 (860)
Q Consensus 173 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (860)
. +. .......|.+.+|++++|+|.........+++.....++.++.+++..-
T Consensus 164 E-ek---~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I------------------------ 215 (1081)
T KOG1538|consen 164 E-EK---VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI------------------------ 215 (1081)
T ss_pred C-cc---eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee------------------------
Confidence 4 22 2334445688999999999987655556888888889999998876321
Q ss_pred EeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEE
Q 038577 253 GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLL 332 (860)
Q Consensus 253 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~ 332 (860)
..-..-.-...|+.+.++|.++++|+.++.+.+|.. .|-.+.++......|..++..|++++++.++.+ |+|.
T Consensus 216 -----gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD-GTiA 288 (1081)
T KOG1538|consen 216 -----GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD-GTIA 288 (1081)
T ss_pred -----cccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEcc-Ceee
Confidence 000111224578999999999999999999999987 566677777777899999999999999999987 9999
Q ss_pred EEEccCceEEEEe-------------------cCcccCe------EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 038577 333 VWEWRSESYILKQ-------------------QGHYFDV------NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF 387 (860)
Q Consensus 333 v~d~~~~~~~~~~-------------------~~~~~~v------~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 387 (860)
.|++.....-... .+....| ..+++- .+.+++--.+ .|.+|.+.++......
T Consensus 289 CyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY--rnrLAVQLpe-ki~iYel~se~~~~mh 365 (1081)
T KOG1538|consen 289 CYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY--RNRLAVQLPE-KILIYELYSEDLSDMH 365 (1081)
T ss_pred hhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh--hhhheecccc-eEEEEeccccccccch
Confidence 9987533211000 0011111 112221 2345554443 6888887655332211
Q ss_pred ec------CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-CCCEEEEEecCCCeEE
Q 038577 388 TE------HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-SGEVICAGTLDSFEIF 460 (860)
Q Consensus 388 ~~------~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~ 460 (860)
.. ..-...-+..+ ++.++.+ .+..+..+|+..-+ .+.....+-.....+.-.| ...-+++|..+|+..+
T Consensus 366 Y~v~ekI~kkf~cSLlVVc--~~HiVlC-qekrLqClDF~Gvk-~ReW~M~S~iRYikV~GGP~gREgL~vGlknGqV~k 441 (1081)
T KOG1538|consen 366 YRVKEKIIKKFECSLLVVC--ANHIVLC-QEKRLQCLDFSGVK-EREWQMESLIRYIKVIGGPPGREGLLVGLKNGQVLK 441 (1081)
T ss_pred hHHHHHHHhhccceEEEEE--cCeEEEE-cccceeeecccchh-hhhhhHHHHHHhhhhhcCCCCcceeEEEecCCcEEE
Confidence 00 00011111111 2344443 45677788774321 1111111100111111122 3346778888884445
Q ss_pred EEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCC
Q 038577 461 VWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLD 540 (860)
Q Consensus 461 v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 540 (860)
+|= ++.-++.. ......|.|+.++...+.||+..+.++..++|+.+++.+.+ ...+.+++|.....-+++-+..
T Consensus 442 iF~-dN~~PiLl-~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL~Q----Epg~nSV~wNT~~E~MlcfT~~ 515 (1081)
T KOG1538|consen 442 IFV-DNLFPILL-LKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELLFQ----EPGANSVAWNTQCEDMLCFTGG 515 (1081)
T ss_pred EEe-cCCchhhe-ecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceEee----cCCCceEEeeccccceEEEecC
Confidence 543 33323222 23567899999999999999999999999999999874443 3457889998754433333334
Q ss_pred CeEEEE
Q 038577 541 GQIHFW 546 (860)
Q Consensus 541 g~i~iw 546 (860)
|.+.|-
T Consensus 516 g~L~VR 521 (1081)
T KOG1538|consen 516 GYLNVR 521 (1081)
T ss_pred CceEEE
Confidence 655553
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=218.44 Aligned_cols=295 Identities=20% Similarity=0.278 Sum_probs=225.1
Q ss_pred CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEE
Q 038577 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLA 365 (860)
Q Consensus 286 g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 365 (860)
.++.+||+.++.....+++.......-.-.-.+.+++++......+.+|.+..........--.++|.|++-+|+|.+++
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ 97 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLL 97 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEE
Confidence 56999999999998888776322111111112367777766667899999887665554444567899999999999999
Q ss_pred EEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC
Q 038577 366 TGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445 (860)
Q Consensus 366 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (860)
.|+..|.+++|.+.+|..+..+..|-.+|+++.|+.|+.++++||.||.|.+|.+.+
T Consensus 98 ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~----------------------- 154 (476)
T KOG0646|consen 98 AGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD----------------------- 154 (476)
T ss_pred eecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-----------------------
Confidence 998999999999999999999999999999999999999999999999999998621
Q ss_pred CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeE
Q 038577 446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT--NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523 (860)
Q Consensus 446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 523 (860)
++....+ .+-++++.+..|.-+|+++...+. ..+++|+|.|.++++||+..+. +......+..+.
T Consensus 155 ---lv~a~~~---------~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LLlti~fp~si~ 221 (476)
T KOG0646|consen 155 ---LVSADND---------HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LLLTITFPSSIK 221 (476)
T ss_pred ---ecccccC---------CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-eeEEEecCCcce
Confidence 1111111 145677888899999999988765 4689999999999999999986 555556788999
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEE-EecccccCCCcccccccccccc-CCCCcEEEEEEecCCCEEEEecC
Q 038577 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYT-IEGRRDISGGRLMTDRRSAANS-SSGKCFTTLCYSADGSYILAGGS 601 (860)
Q Consensus 524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~s~~g~~l~~~~~ 601 (860)
+++.+|-++.+++|+.+|.|.+.++........ +. ..+......+...... ..++.|++++.+-||..|++|+.
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~----~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN----QKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCccccccc----ccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 999999999999999999999988754331000 00 0000000011111111 11258999999999999999999
Q ss_pred CCeEEEEECCCceEEEEEe
Q 038577 602 SKYICMYDVADQVLLRRFQ 620 (860)
Q Consensus 602 dg~v~vwd~~~~~~~~~~~ 620 (860)
||.|+|||+.+.++++++.
T Consensus 298 dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CCCEEEEecchHHHHHHHh
Confidence 9999999999999998765
No 118
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.5e-25 Score=210.76 Aligned_cols=287 Identities=16% Similarity=0.256 Sum_probs=241.4
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC--ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD--FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~ 338 (860)
....+.|+++.|+|....+++++.||.+++|.+.. ...++.+.....+|.+.+|.|+|...+++++....++.||+.+
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 34557899999999999999999999999998853 3456777778889999999999995555555558999999988
Q ss_pred ceEEEE--ecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcE
Q 038577 339 ESYILK--QQGHY-FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTV 415 (860)
Q Consensus 339 ~~~~~~--~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i 415 (860)
.+.... ..++. ..+..+..+|++++|+..+..|.|.+....+++.+..++ -.+.|.+++|+.+++.|++++.+|.|
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence 765433 23332 357788999999999999999999999999999988886 57889999999999999999999999
Q ss_pred EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC------CceEEEecCcccCeEEEEEcCCC
Q 038577 416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT------GRLLDILSGHEGPVHGLVFSPTN 489 (860)
Q Consensus 416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~------~~~~~~~~~h~~~v~~l~~s~~~ 489 (860)
.+||++...+++.+.......-++++.++++.++|+|+..| .|-|||.++ .+++..+..-...|++++|+||.
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA 447 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc-eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch
Confidence 99999999999999988877788999999999999999998 999999663 45666666667889999999999
Q ss_pred CEEEEEeC--CCcEEEEEccCCcceeEEc---ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577 490 ATLASSSW--DKTVRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL 549 (860)
Q Consensus 490 ~~l~s~~~--dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 549 (860)
+.||.+|. +..+++--+.+......+. ..-+.|+|++|||.|.+||.|..+|.+.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 99988775 5678888877665333332 244568999999999999999999999999874
No 119
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=212.69 Aligned_cols=285 Identities=14% Similarity=0.242 Sum_probs=231.4
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEccccce
Q 038577 349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVS--SGFCFVTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRN 425 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~ 425 (860)
.+.|+++.|+|....+++++.||.+++|.+. ....++.+.-...+|.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4679999999999999999999999999876 3455666666788999999999998 899999999999999988765
Q ss_pred eeEeeC--CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577 426 FRTFTT--PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL 503 (860)
Q Consensus 426 ~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i 503 (860)
.+.-.. .....+..+.+++++++|+..+..| .|.+....+++.+..++ -.+.|..++|+.|++.|+.++.+|.|.+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-HIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCc-eEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 443322 2233567889999999999999998 99999999999999887 6789999999999999999999999999
Q ss_pred EEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC------ceeEEEecccccCCCcccccccccc
Q 038577 504 WNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG------ELMYTIEGRRDISGGRLMTDRRSAA 576 (860)
Q Consensus 504 wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (860)
||++...++..+.. ..-.-++++.|++|.+||+|+..|.|.|||.++. +++..+..-.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt--------------- 435 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT--------------- 435 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---------------
Confidence 99999876665553 2234578888999999999999999999997653 2333332221
Q ss_pred ccCCCCcEEEEEEecCCCEEEEecC--CCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCC
Q 038577 577 NSSSGKCFTTLCYSADGSYILAGGS--SKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSD 654 (860)
Q Consensus 577 ~~~~~~~i~~l~~s~~g~~l~~~~~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (860)
..|+++.|++|++.|+.++. ...+++-.+++......|+
T Consensus 436 -----t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP---------------------------------- 476 (514)
T KOG2055|consen 436 -----TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP---------------------------------- 476 (514)
T ss_pred -----eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC----------------------------------
Confidence 25999999999999998875 5678888777765444332
Q ss_pred ccccccccccCccccCCCCCCCCCCCCccceeEEEECCCCCeEEEeccccEE-EEecC
Q 038577 655 TEEGVEKQTRGKLDYDLPGALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVL-VYSID 711 (860)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~ 711 (860)
..+.|...|++++|||.|.+|++|..+|.+ +|.+.
T Consensus 477 ----------------------~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 ----------------------TSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----------------------CCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 124555689999999999999999999955 89764
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=203.12 Aligned_cols=297 Identities=17% Similarity=0.214 Sum_probs=247.1
Q ss_pred EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEe--
Q 038577 45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWR-- 120 (860)
Q Consensus 45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd-- 120 (860)
...+.||+..|..++.......+.+++.|.+.+||.+++|.++..+. |.+.|++++|++.+.+++++ +|+...||.
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 45567999999999998888899999999999999999999999887 99999999999999999999 889999997
Q ss_pred ----CCCCC--------ccc-------------------ceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577 121 ----SPGFK--------KEV-------------------FAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY 169 (860)
Q Consensus 121 ----~~~~~--------~~~-------------------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd 169 (860)
++... ... .-..++..+.+|.+.|.+..|...|+.+++++-|++..+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 22100 000 01135678999999999999999999999999999999999
Q ss_pred ecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577 170 VKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249 (860)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (860)
++++ .....+.||....+.|+-+|..+ .+++.+.|.+.++||.....
T Consensus 301 VEtg------e~v~~LtGHd~ELtHcstHptQr-----LVvTsSrDtTFRLWDFReaI---------------------- 347 (481)
T KOG0300|consen 301 VETG------EVVNILTGHDSELTHCSTHPTQR-----LVVTSSRDTTFRLWDFREAI---------------------- 347 (481)
T ss_pred eccC------ceeccccCcchhccccccCCcce-----EEEEeccCceeEeccchhhc----------------------
Confidence 9999 77899999999999999999998 99999999999999997532
Q ss_pred eeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC
Q 038577 250 KKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG 329 (860)
Q Consensus 250 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g 329 (860)
.....|.+|...|++..|..+. .+++|+.|.+|++||+.+.......-....++..++.+..+..+++-. ++.
T Consensus 348 -----~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh-DNR 420 (481)
T KOG0300|consen 348 -----QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH-DNR 420 (481)
T ss_pred -----ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc-CCc
Confidence 3457788999999999998765 588999999999999987765443333456888889888776666654 459
Q ss_pred cEEEEEccCceEEE----EecCcccCeEEEEEcCCC--CEEEEEeCCCcEEEEECCCC
Q 038577 330 QLLVWEWRSESYIL----KQQGHYFDVNCLAYSPDS--QLLATGADDNKVKVWTVSSG 381 (860)
Q Consensus 330 ~i~v~d~~~~~~~~----~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~~ 381 (860)
+|++||+....... .-++|...|.|++|..+. .-|++++-|..+.-|.+...
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 99999998765433 236899999999997653 35788899999999987653
No 121
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1e-25 Score=214.98 Aligned_cols=250 Identities=24% Similarity=0.363 Sum_probs=214.3
Q ss_pred CEEEEEE-cCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577 277 DMVVVGF-SNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL 355 (860)
Q Consensus 277 ~~l~~~~-~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~ 355 (860)
.+++++. ....+.+|.+...........-.+++.+++-+|+|.+++.++-. |.+++|.+.+|..+..+.+|...|+|+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~-g~lYlWelssG~LL~v~~aHYQ~ITcL 129 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTIS-GNLYLWELSSGILLNVLSAHYQSITCL 129 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeeccc-CcEEEEEeccccHHHHHHhhccceeEE
Confidence 4555444 34578889886555555444456789999999999999988666 999999999999999999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC---------CCeeEEEeecCCCceEEEEEeeCC--CEEEEEeCCCcEEEEEccccc
Q 038577 356 AYSPDSQLLATGADDNKVKVWTVS---------SGFCFVTFTEHTNAVTALHFMANN--HSLLSASLDGTVRAWDLFRYR 424 (860)
Q Consensus 356 ~~s~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~i~~~~~~--~~l~s~~~dg~i~~wd~~~~~ 424 (860)
.|+.||.+|++|+.||.|.+|.+. +-+++..+..|.-+|+++...+.| .++++++.|.++++||+..+.
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 999999999999999999999863 346778889999999999987653 689999999999999999999
Q ss_pred eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC----------------ceEEEecCccc--CeEEEEEc
Q 038577 425 NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG----------------RLLDILSGHEG--PVHGLVFS 486 (860)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~----------------~~~~~~~~h~~--~v~~l~~s 486 (860)
.+..+..+. .+.+++++|.++.+++|+.+| .|.+.++... ..+..+.||.+ +|+|++++
T Consensus 210 LLlti~fp~--si~av~lDpae~~~yiGt~~G-~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 210 LLLTITFPS--SIKAVALDPAERVVYIGTEEG-KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred eeEEEecCC--cceeEEEcccccEEEecCCcc-eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 988888765 689999999999999999999 8988876532 34566788988 99999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeC
Q 038577 487 PTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD 530 (860)
Q Consensus 487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 530 (860)
-||..|++|+.||.|+|||+.+.+++.......++|+.+.+.|-
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999999999999999998877766668889999998764
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-24 Score=197.04 Aligned_cols=244 Identities=17% Similarity=0.312 Sum_probs=208.1
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCC--EEEEEeCCCcEEEEE
Q 038577 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH--SLLSASLDGTVRAWD 419 (860)
Q Consensus 342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~--~l~s~~~dg~i~~wd 419 (860)
+..+..|.+.+++++.+ +.++|+|+.|-+|+|||+.....+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 44557899999999995 88999999999999999999999999999999999999998764 899999999999999
Q ss_pred ccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 420 LFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK 499 (860)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 499 (860)
.........+..+.. +|+.++++|.|++-++.+.|+ .+++||+-.|+.-..++- ...-+.+.|+|.|.+++.++.++
T Consensus 114 ~~~W~~~~slK~H~~-~Vt~lsiHPS~KLALsVg~D~-~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKG-QVTDLSIHPSGKLALSVGGDQ-VLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred cCCeEEeeeeccccc-ccceeEecCCCceEEEEcCCc-eeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEeccE
Confidence 999988888887665 499999999999999999998 999999999887655542 22334499999999998888665
Q ss_pred cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccC
Q 038577 500 TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSS 579 (860)
Q Consensus 500 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (860)
|-+|.+.+.. +......+..+.++.|- ++..|++|.+|+.|.+||.++..+...+.+|..
T Consensus 191 -i~i~q~d~A~-v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~----------------- 250 (362)
T KOG0294|consen 191 -IDIYQLDNAS-VFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN----------------- 250 (362)
T ss_pred -EEEEecccHh-Hhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh-----------------
Confidence 9999988776 33333344667777776 677899999999999999999999999999986
Q ss_pred CCCcEEEEEE--ecCCCEEEEecCCCeEEEEECCCc
Q 038577 580 SGKCFTTLCY--SADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 580 ~~~~i~~l~~--s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
+|-++.+ .|++.||++++.||.|+|||++..
T Consensus 251 ---RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 251 ---RVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ---heeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 5888874 467889999999999999999876
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.4e-21 Score=199.70 Aligned_cols=273 Identities=16% Similarity=0.208 Sum_probs=218.3
Q ss_pred cCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC-eEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCC
Q 038577 49 VESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH-VVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFK 125 (860)
Q Consensus 49 ~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~-~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~ 125 (860)
..|...-+.++|.|+|++|.+++.||.|++|+.... +.-..+. +...|.+++-. +.+++++ .++.|.+|....++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 369999999999999999999999999999987765 3333344 67777777765 3466666 89999999999887
Q ss_pred cccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCc
Q 038577 126 KEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDK 205 (860)
Q Consensus 126 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~ 205 (860)
.. ..+...+-++.+++|+-+|+++|.|+.|-.|++-+..+. .....+.+|.++|.++.|+|.+.
T Consensus 88 ~~-------~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~------s~~~~lrgh~apVl~l~~~p~~~--- 151 (933)
T KOG1274|consen 88 ED-------TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS------SQEKVLRGHDAPVLQLSYDPKGN--- 151 (933)
T ss_pred cc-------ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc------chheeecccCCceeeeeEcCCCC---
Confidence 42 234445667999999999999999999999999999988 67899999999999999999999
Q ss_pred cceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC
Q 038577 206 VNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN 285 (860)
Q Consensus 206 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 285 (860)
.|++.+-||.|++|+++++..... |.-..+..-......+..++|+|++..+++...+
T Consensus 152 --fLAvss~dG~v~iw~~~~~~~~~t--------------------l~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d 209 (933)
T KOG1274|consen 152 --FLAVSSCDGKVQIWDLQDGILSKT--------------------LTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD 209 (933)
T ss_pred --EEEEEecCceEEEEEcccchhhhh--------------------cccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence 999999999999999998654211 1111111111114457889999999999999999
Q ss_pred CeEEEEECCCceeEEEEeec--CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCE
Q 038577 286 GVFGLYQMPDFVCIHLLSIS--REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQL 363 (860)
Q Consensus 286 g~i~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 363 (860)
+.|.+|+..+.+....++.. ...+..+.|+|.|.+|+++.-+ |.|.|||+++-.. ......|.|++|.|+++.
T Consensus 210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~-g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLD-GQILVWNVDTHER----HEFKRAVCCEAWKPNANA 284 (933)
T ss_pred CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccC-CcEEEEecccchh----ccccceeEEEecCCCCCe
Confidence 99999999999988877653 3358999999999999999877 9999999998221 233456899999998765
Q ss_pred EEE
Q 038577 364 LAT 366 (860)
Q Consensus 364 l~~ 366 (860)
+-.
T Consensus 285 it~ 287 (933)
T KOG1274|consen 285 ITL 287 (933)
T ss_pred eEE
Confidence 543
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=1.3e-23 Score=215.99 Aligned_cols=279 Identities=10% Similarity=0.074 Sum_probs=218.5
Q ss_pred CEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEE
Q 038577 277 DMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLA 356 (860)
Q Consensus 277 ~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~ 356 (860)
+.+++++.++.+.+||+.+++....+..+. .+..++|+|+|+.+++++..++.+++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 467888999999999999998888887554 4678999999998877766679999999999887776655443 56789
Q ss_pred EcCCCCEEEEE-eCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC-cEEEEEccccceeeEeeCCCC
Q 038577 357 YSPDSQLLATG-ADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG-TVRAWDLFRYRNFRTFTTPSS 434 (860)
Q Consensus 357 ~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~ 434 (860)
|+|+++.++++ +.++.+++||+.+++.+..+.. ...+.+++|+|++..+++++.++ .+..||..+++.........
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~- 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ- 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC-
Confidence 99999977655 5589999999998887777653 34578899999999999888775 46778988877665544332
Q ss_pred CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-----c--CeEEEEEcCCCCEEEE-EeCCCcEEEEEc
Q 038577 435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-----G--PVHGLVFSPTNATLAS-SSWDKTVRLWNV 506 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-----~--~v~~l~~s~~~~~l~s-~~~dg~i~iwd~ 506 (860)
....++++|+++.+++++..++.+++||+++++.+..+..+. . ....++|+|++++++. .+.++.+.+||+
T Consensus 158 -~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 158 -RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred -CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEEC
Confidence 346789999999987766533499999999998877664321 1 2346889999998554 445678999999
Q ss_pred cCCcceeEEcccCCCeEEEEEeeCCCEEEEE-eCCCeEEEEeCCCCceeEEEeccc
Q 038577 507 FEGKGSVESFPHTHDVLTVVYRPDGRQLACS-TLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 507 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
.+++.... ..+...+.+++|+|+|++|+++ ..+|.|.+||+.+++.+..++...
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 291 (300)
T TIGR03866 237 KTYEVLDY-LLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR 291 (300)
T ss_pred CCCcEEEE-EEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc
Confidence 88764433 3445678999999999999886 468999999999999999887654
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=7.2e-26 Score=217.11 Aligned_cols=280 Identities=17% Similarity=0.232 Sum_probs=235.3
Q ss_pred CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC---eEEEEee---cCCceeEEEECCCCCEEEEE-eCCeEEEEeCC
Q 038577 50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH---VVLHRVR---FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSP 122 (860)
Q Consensus 50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~---~~~~~~~---~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~ 122 (860)
.|..-|.++++|...+++.+|+. |.|+|||+... ..+..+. -..-|+++..+|||+.|.+| .-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68888999999999999999885 88999999743 2333333 45679999999999999988 66799999998
Q ss_pred CCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577 123 GFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK 202 (860)
Q Consensus 123 ~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 202 (860)
..... +...+....-...+++.+||.+..++++.||.|.|||+.+. ..+..+.||.+.+.++.+++||.
T Consensus 496 apTpr-----ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGt 564 (705)
T KOG0639|consen 496 APTPR-----IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGT 564 (705)
T ss_pred CCCcc-----hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCc
Confidence 76531 22333433455788999999999999999999999999998 78899999999999999999999
Q ss_pred CCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEE
Q 038577 203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVG 282 (860)
Q Consensus 203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 282 (860)
.|-+|+-|.+++.||+..+.. ..-....+.|.++.++|.++++++|
T Consensus 565 -----klWTGGlDntvRcWDlregrq-----------------------------lqqhdF~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 565 -----KLWTGGLDNTVRCWDLREGRQ-----------------------------LQQHDFSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred -----eeecCCCccceeehhhhhhhh-----------------------------hhhhhhhhhheecccCCCccceeee
Confidence 999999999999999987533 1112234679999999999999999
Q ss_pred EcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC
Q 038577 283 FSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ 362 (860)
Q Consensus 283 ~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 362 (860)
-.++.+.+... ++.....+..|..-|.++.|.+.|+|+++++.+ ..+..|...-|..+.... ....|.++.++.|.+
T Consensus 611 Mens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkD-nlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddk 687 (705)
T KOG0639|consen 611 MENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKD-NLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDK 687 (705)
T ss_pred cccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCch-hhhhhccCccccceeecc-ccCcceeeeeccCce
Confidence 99999999988 555666778888999999999999999999876 899999998888777654 356799999999999
Q ss_pred EEEEEeCCCcEEEEEC
Q 038577 363 LLATGADDNKVKVWTV 378 (860)
Q Consensus 363 ~l~~~~~dg~i~iwd~ 378 (860)
+++||+.|....+|.+
T Consensus 688 yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 688 YIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEecCCCcceEEEEE
Confidence 9999999988888864
No 126
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=9.9e-25 Score=218.28 Aligned_cols=282 Identities=22% Similarity=0.367 Sum_probs=230.8
Q ss_pred ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
.....+.+|...|..+++.+.. .++++++||++++|+-..++. .....
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~------~i~s~sRd~t~~vw~~~~~~~--------------------------l~~~~ 52 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV------CIISGSRDGTVKVWAKKGKQY--------------------------LETHA 52 (745)
T ss_pred eeEEEeccCccchheeEecCCe------EEeecCCCCceeeeeccCccc--------------------------cccee
Confidence 4567889999999999987765 699999999999998766432 22344
Q ss_pred ccCCCCceEE-EEecC-CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 260 FSQAPSKVTA-CDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 260 ~~~~~~~v~~-~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
+.++.+.|.+ +++.+ ++-.+++|+.|+.+.+|......+...+.+|...|.++....++. +++++.+ .++++|-..
T Consensus 53 ~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD-~TakvW~~~ 130 (745)
T KOG0301|consen 53 FEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWD-STAKVWRIG 130 (745)
T ss_pred cccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccc-cceEEecch
Confidence 5556666666 77775 455699999999999999999999999999999999998888887 6655554 999999754
Q ss_pred CceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577 338 SESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA 417 (860)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~ 417 (860)
. +...+++|...|++++.-|++ .++||+.|.+|++|.- ++.++++.+|.+.|+++++.+++ .+++++.||.|+.
T Consensus 131 ~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 131 E--LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRL 204 (745)
T ss_pred h--hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEE
Confidence 3 344478999999999999888 7889999999999974 78889999999999999998775 5788888888777
Q ss_pred EEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577 418 WDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW 497 (860)
Q Consensus 418 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 497 (860)
|++ +|+.+..+.+|..-|.++...+++..++++++
T Consensus 205 w~~---------------------------------------------~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gE 239 (745)
T KOG0301|consen 205 WDL---------------------------------------------DGEVLLEMHGHTNFVYSISMALSDGLIVSTGE 239 (745)
T ss_pred Eec---------------------------------------------cCceeeeeeccceEEEEEEecCCCCeEEEecC
Confidence 775 35667778889999999998889999999999
Q ss_pred CCcEEEEEccCCcceeEEcccCC-CeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 498 DKTVRLWNVFEGKGSVESFPHTH-DVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 498 dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
|++++||+.. + +.+...++. .|+++.+-++|. +++|+.||.|+||....
T Consensus 240 DrtlriW~~~--e-~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 240 DRTLRIWKKD--E-CVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceEEEeecC--c-eEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999999976 3 444455544 899999998886 67788899999998763
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.3e-23 Score=214.08 Aligned_cols=275 Identities=15% Similarity=0.124 Sum_probs=212.6
Q ss_pred EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEE
Q 038577 321 LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL-ATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHF 399 (860)
Q Consensus 321 l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~ 399 (860)
++++...++.+.+||..+++....+..+.. +.+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++|
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence 344445569999999999988887766543 6789999999876 5667789999999999888777765443 567899
Q ss_pred eeCCCEEEEE-eCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc
Q 038577 400 MANNHSLLSA-SLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478 (860)
Q Consensus 400 ~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~ 478 (860)
+|+++.++++ +.++.+++||+.+.+.+..+... ..+.+++++|+|.+++++..++..+..||..+++....+.. ..
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 9999877654 56899999999988777666533 24578999999999999888764688899998877665542 33
Q ss_pred CeEEEEEcCCCCEEEEE-eCCCcEEEEEccCCcceeEEccc-------CCCeEEEEEeeCCCEEEEE-eCCCeEEEEeCC
Q 038577 479 PVHGLVFSPTNATLASS-SWDKTVRLWNVFEGKGSVESFPH-------THDVLTVVYRPDGRQLACS-TLDGQIHFWDPL 549 (860)
Q Consensus 479 ~v~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~ 549 (860)
.+.+++|+|++++++.+ ..++.|++||+.+++....+..+ ......++|+|++++++++ +.++.+.+||+.
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 45789999999988654 46899999999988754433211 1123568899999986554 456789999999
Q ss_pred CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEe-cCCCeEEEEECCCceEEEEEee
Q 038577 550 NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAG-GSSKYICMYDVADQVLLRRFQI 621 (860)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~v~vwd~~~~~~~~~~~~ 621 (860)
+++.+..+.... .+.+++|+|+|++|+++ +.+|.|.+||+.+++.+..++.
T Consensus 238 ~~~~~~~~~~~~---------------------~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 289 (300)
T TIGR03866 238 TYEVLDYLLVGQ---------------------RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV 289 (300)
T ss_pred CCcEEEEEEeCC---------------------CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence 988776553322 37899999999999886 4689999999999999988864
No 128
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-22 Score=209.73 Aligned_cols=503 Identities=16% Similarity=0.229 Sum_probs=339.1
Q ss_pred CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCC---EEEEE-eCCeEEEEeCCCC
Q 038577 50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGK---YIAVG-TGKLVQIWRSPGF 124 (860)
Q Consensus 50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~---~la~~-~~~~i~iwd~~~~ 124 (860)
|-...-..-.||+|++++.... +..|.||...+|.++..+. |..++..+.+.|... ++.+. .+|.|++||...+
T Consensus 14 g~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 14 GRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred cccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 3333334567999999988766 4689999999999999887 899999999988654 33344 8999999999987
Q ss_pred CcccceeEEEEEeeccCCCeEEEEEcC---CCCeEE-EeecCC------------eEEEEeecccccCcccccceEeecC
Q 038577 125 KKEVFAFELIRTLADCNDKVTALNWSP---DSNYLL-VGSKDL------------AVRLFYVKEKLKGIHTNKPFLLLGH 188 (860)
Q Consensus 125 ~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~-s~~~dg------------~v~vwd~~~~~~~~~~~~~~~~~~h 188 (860)
. +++++..+ .++..+.+.| +-...+ .+..|. +++-+.+.+. .. .....+..|
T Consensus 93 ~-------Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~-~~---~~~d~~~~~ 160 (792)
T KOG1963|consen 93 E-------LLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATF-DS---AKGDFLKEH 160 (792)
T ss_pred E-------EEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeec-cc---cchhhhhhh
Confidence 6 45555433 2344444432 111122 111221 1111111111 00 111122223
Q ss_pred CCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceE
Q 038577 189 RDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT 268 (860)
Q Consensus 189 ~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 268 (860)
.. -..+.+++.+. +.....+..+.+|....+. |.......-..|...++
T Consensus 161 ~~-~~~I~~~~~ge------~~~i~~~~~~~~~~v~~~~------------------------~~~~~~~~~~~Htf~~t 209 (792)
T KOG1963|consen 161 QE-PKSIVDNNSGE------FKGIVHMCKIHIYFVPKHT------------------------KHTSSRDITVHHTFNIT 209 (792)
T ss_pred cC-CccEEEcCCce------EEEEEEeeeEEEEEecccc------------------------eeeccchhhhhhcccce
Confidence 22 34567777774 5556667788888887631 22333333445556689
Q ss_pred EEEecCCCCEEEEEEcCCeEEEEECCC----ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577 269 ACDYHRGLDMVVVGFSNGVFGLYQMPD----FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK 344 (860)
Q Consensus 269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~----~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~ 344 (860)
|.+++|.++++++|..+|.|.+|.--. ....+.+.-|...|.+++|+++|.+|++++.+ |.+.+|.+.+++ ..-
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E-~VLv~Wq~~T~~-kqf 287 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE-GVLVLWQLETGK-KQF 287 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc-eEEEEEeecCCC-ccc
Confidence 999999999999999999999997532 23446677788899999999999999999887 999999999988 444
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec-----------CCCceEEEEEeeCCCEEEEEeCCC
Q 038577 345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-----------HTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
++.-.++|..+.++||+...+....|+.|.+....+.....++.+ ..+-.+.++++|..+.++-.+..|
T Consensus 288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g 367 (792)
T KOG1963|consen 288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG 367 (792)
T ss_pred ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence 566778899999999999999999999999998866544444332 133467788899777889999999
Q ss_pred cEEEEEccccceeeEeeCC----------CCCcEEEEEECCCCCEEEEEecC---------CCeEEEEECCCCceE----
Q 038577 414 TVRAWDLFRYRNFRTFTTP----------SSRQFVSLASDQSGEVICAGTLD---------SFEIFVWSMKTGRLL---- 470 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~---------~~~i~v~d~~~~~~~---- 470 (860)
.|.+||+.+.+.+..+... ....+++++.+..|.++++.-.. ...+++|-......-
T Consensus 368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~ 447 (792)
T KOG1963|consen 368 HVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILN 447 (792)
T ss_pred eEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEE
Confidence 9999999887766555421 11245667777888888876431 125777765543322
Q ss_pred -EEecCcccCeEEEEEcCC-C-CEEEEEeCCCcEEEEEccCCcce----------eEEcccCCCeEEEEEeeCCCEEEEE
Q 038577 471 -DILSGHEGPVHGLVFSPT-N-ATLASSSWDKTVRLWNVFEGKGS----------VESFPHTHDVLTVVYRPDGRQLACS 537 (860)
Q Consensus 471 -~~~~~h~~~v~~l~~s~~-~-~~l~s~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v~~~~~s~~~~~l~~~ 537 (860)
.....|...+...++.+. . ..+++++.||.+++|-+.+.+.. ..-.-|..++++++|+.||..|+++
T Consensus 448 T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s 527 (792)
T KOG1963|consen 448 TKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS 527 (792)
T ss_pred EEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe
Confidence 223568777666666543 2 37999999999999998443311 1111378899999999999766655
Q ss_pred eCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC--CEEEEecCCCeEEEEECCCceE
Q 038577 538 TLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG--SYILAGGSSKYICMYDVADQVL 615 (860)
Q Consensus 538 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~v~vwd~~~~~~ 615 (860)
.+++|.+||..+...+....+.... ++..++|.... ...+.....+.+.+|++-+..+
T Consensus 528 -~~~~Itiwd~~~~~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l 587 (792)
T KOG1963|consen 528 -FDDTITIWDYDTKNELLCTEGSRNW-------------------PIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSL 587 (792)
T ss_pred -cCCEEEEecCCChhhhhcccccccc-------------------chHhHhhhcccccccceeeccCceEehHhhhhhhe
Confidence 5789999999885333333332221 23444443321 2233445678899999998877
Q ss_pred EEE
Q 038577 616 LRR 618 (860)
Q Consensus 616 ~~~ 618 (860)
...
T Consensus 588 ~w~ 590 (792)
T KOG1963|consen 588 IWN 590 (792)
T ss_pred ecc
Confidence 763
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=2.4e-25 Score=213.58 Aligned_cols=282 Identities=20% Similarity=0.262 Sum_probs=236.7
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce---eEEEEee--cCceeEEEEEeeCCCEEEEEEccCCcEEEE
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV---CIHLLSI--SREKITTAVFNELGNWLVFGCAKLGQLLVW 334 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~---~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~ 334 (860)
.-.|..-|.++.++...+++++|+ .|.|+|||+.... .+..+.. ...-|+++...|||+.|++++.. .++.||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea-stlsiW 492 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA-STLSIW 492 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc-ceeeee
Confidence 345777888888998888888876 5679999996432 2223322 34568999999999999999885 899999
Q ss_pred EccCceEEEEe--cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC
Q 038577 335 EWRSESYILKQ--QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD 412 (860)
Q Consensus 335 d~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d 412 (860)
|+.......+. ....-...+++.+||.+..+++..||.|.|||+.+...++.|.+|.+.+.||.+++||..|.+||-|
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCc
Confidence 99876554333 3333457789999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492 (860)
Q Consensus 413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 492 (860)
.+|+.||+++++........ .+|.++..+|.+.++++|..++ .+.+.... +.....+.-|.+-|.++.|.+.|+++
T Consensus 573 ntvRcWDlregrqlqqhdF~--SQIfSLg~cP~~dWlavGMens-~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFS--SQIFSLGYCPTGDWLAVGMENS-NVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred cceeehhhhhhhhhhhhhhh--hhheecccCCCccceeeecccC-cEEEEecC-CccceeecccccEEEEEEecccCcee
Confidence 99999999998877665543 4789999999999999999998 88888765 44456667799999999999999999
Q ss_pred EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577 493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP 548 (860)
Q Consensus 493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 548 (860)
++.+.|..+..|...-+..+.+. ...+.|.++.+|.|.+++++|+.|....||.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999888744433 45678999999999999999999988888865
No 130
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.1e-24 Score=214.71 Aligned_cols=282 Identities=22% Similarity=0.336 Sum_probs=234.3
Q ss_pred ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE--EecCcccCeEE-EEEcC-CCCEEEEEeCCC
Q 038577 296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL--KQQGHYFDVNC-LAYSP-DSQLLATGADDN 371 (860)
Q Consensus 296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~--~~~~~~~~v~~-~~~s~-~~~~l~~~~~dg 371 (860)
.+..+.+.+|...+..+++.+.. +++.++ +||++++|+-..+..+. .+.+|.+-|.+ +++.+ ++..+++|+.|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~s-Rd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGS-RDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecC-CCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 45567788899888888866544 555554 45999999987766554 34667777766 77775 455799999999
Q ss_pred cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEE
Q 038577 372 KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICA 451 (860)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 451 (860)
.|.+|......++..+.+|.+.|.++....++. +++|+.|.++++|........ ..++...+.++..-|++ .+++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~---l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS---LQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc---cCCcchheeeeeecCCC-cEEe
Confidence 999999999999999999999999999888876 999999999999987543322 44566788899888888 7779
Q ss_pred EecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCC
Q 038577 452 GTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG 531 (860)
Q Consensus 452 ~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~ 531 (860)
|+.|. .|++|.- ++.++++.+|..-|+.+++-+++ .+++++.||.|+.|++ +++.+.+..+|..-+.++...+++
T Consensus 157 gsaDK-tIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~ 231 (745)
T KOG0301|consen 157 GSADK-TIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSD 231 (745)
T ss_pred ccCcc-eeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCC
Confidence 99999 9999985 78899999999999999999775 4889999999999999 777799999999999999988899
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 532 RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
..++++++|++++||+.. ++.+.+..+.. .|+++++-++|. +++|++||.|+||...
T Consensus 232 ~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--------------------siWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 232 GLIVSTGEDRTLRIWKKD--ECVQVITLPTT--------------------SIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CeEEEecCCceEEEeecC--ceEEEEecCcc--------------------ceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 999999999999999976 66666655432 489999999887 6668899999999877
Q ss_pred C
Q 038577 612 D 612 (860)
Q Consensus 612 ~ 612 (860)
.
T Consensus 289 k 289 (745)
T KOG0301|consen 289 K 289 (745)
T ss_pred c
Confidence 3
No 131
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=2.3e-23 Score=219.45 Aligned_cols=247 Identities=14% Similarity=0.129 Sum_probs=195.1
Q ss_pred EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeC-CCEEEEEEccCCcEEEEEccCce--------EEEEecCcccCe
Q 038577 282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNEL-GNWLVFGCAKLGQLLVWEWRSES--------YILKQQGHYFDV 352 (860)
Q Consensus 282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~g~i~v~d~~~~~--------~~~~~~~~~~~v 352 (860)
|+..|.+.+|+......+..+..|...|.+++|+|+ +..+++++. ||.|++||+.++. .+..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~-DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSE-DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 556788999998887788889999999999999997 566666655 5999999997642 234567899999
Q ss_pred EEEEEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC
Q 038577 353 NCLAYSPDSQL-LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT 431 (860)
Q Consensus 353 ~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 431 (860)
.+++|+|++.. +++++.|+.|++||+.++.....+. |...|.+++|+|+|..|++++.|+.|++||+++++....+..
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 99999999875 4789999999999999998877775 668899999999999999999999999999999988887766
Q ss_pred CCCCc----EEEEEECCCCCEEEEEecCC---CeEEEEECCC-CceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577 432 PSSRQ----FVSLASDQSGEVICAGTLDS---FEIFVWSMKT-GRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTV 501 (860)
Q Consensus 432 ~~~~~----~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~-~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i 501 (860)
+.... +....+++++.++++++.++ .+|++||++. ++++..+. .+.+.+......+++.++++|+.|+.|
T Consensus 208 H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 54321 22234568999999887764 2799999995 55665543 333444444455678999999999999
Q ss_pred EEEEccCCcceeEEc--ccCCCeEEEEEeeCC
Q 038577 502 RLWNVFEGKGSVESF--PHTHDVLTVVYRPDG 531 (860)
Q Consensus 502 ~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~ 531 (860)
++|++..+. ...+. .+..+..+++|.|..
T Consensus 288 r~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 999998764 22222 366788899999964
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=8.9e-24 Score=191.27 Aligned_cols=269 Identities=17% Similarity=0.258 Sum_probs=221.0
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577 263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI 342 (860)
Q Consensus 263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~ 342 (860)
....|..+.|+|.++.|++++.||.+++|+.+.......+ .+..++.+++|.+ ...+++++.+ |.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~d-g~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLD-GQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccC-ceEEEEEecCCcce
Confidence 3467999999999999999999999999999877554444 3567999999987 4455566555 99999999988655
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 422 (860)
. +..|..+|+|+.+++....+++|+.|++|++||.+.......+. ....|.++... ++.|+.|+.|..+.+||+++
T Consensus 89 ~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 89 Q-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred e-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 4 45799999999999988899999999999999998755555554 34478888765 55899999999999999998
Q ss_pred cceee-EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCC----ceEEEecCcc---------cCeEEEEEcCC
Q 038577 423 YRNFR-TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTG----RLLDILSGHE---------GPVHGLVFSPT 488 (860)
Q Consensus 423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~----~~~~~~~~h~---------~~v~~l~~s~~ 488 (860)
..... .....-..++.++++-|++.-.++++-+| .|.+=.++.. +....|+.|. -||++|+|+|-
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG-RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG-RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecc-eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 76543 22334455788999999988899999998 8887766655 3445566664 37999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC
Q 038577 489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL 539 (860)
Q Consensus 489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 539 (860)
...||||+.||.|.+||+.+.+.+.++......|.+++|+.||..||+++.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999999999888888888888999999999999999974
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.6e-23 Score=189.70 Aligned_cols=270 Identities=13% Similarity=0.150 Sum_probs=221.3
Q ss_pred CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccce
Q 038577 51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFA 130 (860)
Q Consensus 51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~ 130 (860)
-...|+.+.|+|.+..|++++-||++++||+........++|..++.+++|.++.+.+..+.|+.|+.+|+.++.
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~----- 86 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN----- 86 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCc-----
Confidence 457799999999999999999999999999999999999999999999999987766666699999999999987
Q ss_pred eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
...+..|...|.|+.+++....+++|+-|++|++||.... .....+. ....|.++.... . .|+
T Consensus 87 ---~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~------~~~~~~d-~~kkVy~~~v~g--~-----~Lv 149 (323)
T KOG1036|consen 87 ---EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK------VVVGTFD-QGKKVYCMDVSG--N-----RLV 149 (323)
T ss_pred ---ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc------ccccccc-cCceEEEEeccC--C-----EEE
Confidence 3667889999999999998889999999999999999864 2222222 233777776654 3 899
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~ 290 (860)
.++.|..+.+||+....... ...-..-.-.+.|+++-|++.-.++++-+|.|.+
T Consensus 150 Vg~~~r~v~iyDLRn~~~~~--------------------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 150 VGTSDRKVLIYDLRNLDEPF--------------------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred EeecCceEEEEEcccccchh--------------------------hhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 99999999999998753310 1111123346899999999999999999999988
Q ss_pred EECCCc----eeEEEEeecC---------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE
Q 038577 291 YQMPDF----VCIHLLSISR---------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY 357 (860)
Q Consensus 291 ~~~~~~----~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 357 (860)
=..+.. +....++.|. .+|.+++|+|--..+++++++ |.|.+||+.+.+.+..+......|.+++|
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD-G~V~~Wd~~~rKrl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD-GIVNIWDLFNRKRLKQLAKYETSISSLSF 282 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC-ceEEEccCcchhhhhhccCCCCceEEEEe
Confidence 666544 2334444443 378999999998899998887 99999999999998888777778999999
Q ss_pred cCCCCEEEEEeC
Q 038577 358 SPDSQLLATGAD 369 (860)
Q Consensus 358 s~~~~~l~~~~~ 369 (860)
+.+|..||+++.
T Consensus 283 s~dG~~LAia~s 294 (323)
T KOG1036|consen 283 SMDGSLLAIASS 294 (323)
T ss_pred ccCCCeEEEEec
Confidence 999999999875
No 134
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.6e-24 Score=211.21 Aligned_cols=325 Identities=18% Similarity=0.209 Sum_probs=237.7
Q ss_pred eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCC--CEEEEEeCCeEEEEeCCC
Q 038577 46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNG--KYIAVGTGKLVQIWRSPG 123 (860)
Q Consensus 46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg--~~la~~~~~~i~iwd~~~ 123 (860)
....||++.|.++...|.|.+||+|+.||+|+||.+.+|.+++++...+.|.|++|+|.+ ..||++.+..+.|-+..-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 345599999999999999999999999999999999999999999999999999999976 567777666666666543
Q ss_pred CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe----ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577 124 FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG----SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV 199 (860)
Q Consensus 124 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~----~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 199 (860)
|... +.+ +....|+++ ..++.+..|.-....+. ...+.....|...|..+.|+.
T Consensus 474 G~~~------------e~~--------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~--~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 474 GDRL------------EVG--------PTKELLASAPNESEPDAAVVTWSRASLDEL--EKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred cchh------------hhc--------chhhhhhcCCCccCCcccceeechhhhhhh--ccceEEEEecCCccceeeeec
Confidence 3210 000 011122222 23456777765533111 011233344455555555555
Q ss_pred CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE
Q 038577 200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV 279 (860)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 279 (860)
.|. +|++...++
T Consensus 532 kGD-----YlatV~~~~--------------------------------------------------------------- 543 (733)
T KOG0650|consen 532 KGD-----YLATVMPDS--------------------------------------------------------------- 543 (733)
T ss_pred CCc-----eEEEeccCC---------------------------------------------------------------
Confidence 554 444443221
Q ss_pred EEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577 280 VVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 280 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 359 (860)
.+..|.|+++........++...+.+.++.|+|...++++++. ..|++||+..+..+.++......|..++++|
T Consensus 544 ----~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 544 ----GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred ----CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 1245666666655555556666678889999999999988876 6999999998887777766677899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEE
Q 038577 360 DSQLLATGADDNKVKVWTVSS-GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFV 438 (860)
Q Consensus 360 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 438 (860)
.|..|+.|+.|+.+..||+.- .++.+++..|...+++++|++.-..+++|+.||++.+|.-.-..
T Consensus 618 ~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~-------------- 683 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN-------------- 683 (733)
T ss_pred CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh--------------
Confidence 999999999999999999984 46777888899999999999999999999999999987531100
Q ss_pred EEEECCCCCEEEEEecCCCeEEEEECC-C--CceEEEecCcccC----eEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 439 SLASDQSGEVICAGTLDSFEIFVWSMK-T--GRLLDILSGHEGP----VHGLVFSPTNATLASSSWDKTVRLW 504 (860)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~~~i~v~d~~-~--~~~~~~~~~h~~~----v~~l~~s~~~~~l~s~~~dg~i~iw 504 (860)
|+- + --++..+++|... |.+..|+|...+|++++.||+|++|
T Consensus 684 ------------------------Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 684 ------------------------DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------------------------hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 000 0 1145666777655 8899999999999999999999998
No 135
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=190.27 Aligned_cols=282 Identities=14% Similarity=0.262 Sum_probs=224.5
Q ss_pred eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577 309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388 (860)
Q Consensus 309 i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 388 (860)
..++.|++.|.++++++.+ |.+.|||+.+...-..+.+|..+|++++||+||+.|++++.|..|.+||+..|.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~n-G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCAN-GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccC-CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 6899999999999999988 999999999998888889999999999999999999999999999999999999988886
Q ss_pred cCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEccccceeeEeeCCCCC----cEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577 389 EHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRNFRTFTTPSSR----QFVSLASDQSGEVICAGTLDSFEIFVWS 463 (860)
Q Consensus 389 ~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~i~v~d 463 (860)
..++|+.+.|+|..+ ..++.-.+..-.+-++...+. ..++..... ...+..|++.|+++++|...| .+.+||
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG-kllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG-KLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcc-eEEEEe
Confidence 688999999999653 344443444455555554222 222222211 122346899999999999998 999999
Q ss_pred CCCCceEEEecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-----e----EEc--ccCCCeEEEEEeeCC
Q 038577 464 MKTGRLLDILSGHE-GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-----V----ESF--PHTHDVLTVVYRPDG 531 (860)
Q Consensus 464 ~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-----~----~~~--~~~~~v~~~~~s~~~ 531 (860)
..+.+++..++-.. ..|.++.++..|+.|+.-+.|+.||.|++..-... . ++. .....-.+++||.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999998887665 78999999999999999999999999998632111 0 111 123344678999999
Q ss_pred CEEEEEeCC-CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 532 RQLACSTLD-GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 532 ~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
.|++.++.. ..++||.-..|.+++.+.|.++. ....+.|.|-...+++. ..|.|++|..
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-------------------~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-------------------ELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchh-------------------heeecccccceeeeeec-cCCceEEEEe
Confidence 999888743 45999999999999999988742 46788899988888877 7899999987
Q ss_pred CCce
Q 038577 611 ADQV 614 (860)
Q Consensus 611 ~~~~ 614 (860)
..-+
T Consensus 322 ~~~e 325 (405)
T KOG1273|consen 322 VQVE 325 (405)
T ss_pred eccc
Confidence 6543
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.2e-23 Score=213.65 Aligned_cols=273 Identities=21% Similarity=0.246 Sum_probs=225.2
Q ss_pred CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577 262 QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340 (860)
Q Consensus 262 ~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~ 340 (860)
.|....+.++|.|+|+.+++++.||.|++|+..+. +....+..+...+.+++.. +..+++++.+ ++|.+|...++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~-~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQ-NTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeecc-ceEEEeeCCCCC
Confidence 56677999999999999999999999999998766 4445454455566666654 4467766665 999999998887
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
.-..+....-++++++++.+|+++|.|+.|-.|++.++.+......+.+|..+|.++.|+|++.+|++.+.||.|++||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 66555556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeeC-------CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC--cccCeEEEEEcCCCCE
Q 038577 421 FRYRNFRTFTT-------PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG--HEGPVHGLVFSPTNAT 491 (860)
Q Consensus 421 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~s~~~~~ 491 (860)
.++.....+.. .....+..++|+|+|..+++.+.++ .|.+|+..+++....+.. +...+.+++|+|+|+|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~-~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN-TVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC-eEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98877665542 2234567799999988888888888 999999999988877753 4555999999999999
Q ss_pred EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577 492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ 542 (860)
Q Consensus 492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 542 (860)
||+++.||.|.|||+++.+. ......|.+++|.|+..-+-.....|.
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccc
Confidence 99999999999999987332 345567899999998776544443343
No 137
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.1e-23 Score=199.17 Aligned_cols=276 Identities=20% Similarity=0.335 Sum_probs=211.5
Q ss_pred EeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCc----ccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577 136 TLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGI----HTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 136 ~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~----~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
....|.+.|+.+.+.|.. ..+|+.+..+.|.|||........ .......+.+|.+.-.+++|++.... +++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g----~Ll 194 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG----TLL 194 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce----eEe
Confidence 334699999999999977 566677888999999998762221 11233588999998788999887664 899
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~ 290 (860)
+++.|+++++||+...... +
T Consensus 195 s~~~d~~i~lwdi~~~~~~----------------------------------------------~-------------- 214 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKE----------------------------------------------D-------------- 214 (422)
T ss_pred eccCCCcEEEEeccccccC----------------------------------------------C--------------
Confidence 9999999999998863210 0
Q ss_pred EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc--CceEEEEecCcccCeEEEEEcC-CCCEEEEE
Q 038577 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR--SESYILKQQGHYFDVNCLAYSP-DSQLLATG 367 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~--~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~ 367 (860)
+.......+..|...|..++|++-...++.+.++|+.+.|||++ +.+......+|.++|.|++|+| ++..||+|
T Consensus 215 ---~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~ 291 (422)
T KOG0264|consen 215 ---KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG 291 (422)
T ss_pred ---ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec
Confidence 01122334556777888888888888888888888999999999 4555666688999999999999 56688999
Q ss_pred eCCCcEEEEECCCC-eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC
Q 038577 368 ADDNKVKVWTVSSG-FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS 445 (860)
Q Consensus 368 ~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (860)
+.|++|.+||+++- .++..+.+|...|..+.|+|.. ..|++++.|+.+.+||+..-...+.....
T Consensus 292 S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda------------- 358 (422)
T KOG0264|consen 292 SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA------------- 358 (422)
T ss_pred cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh-------------
Confidence 99999999999864 5778899999999999999975 67889999999999998653322210000
Q ss_pred CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE-EEEEeCCCcEEEEEccC
Q 038577 446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT-LASSSWDKTVRLWNVFE 508 (860)
Q Consensus 446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~-l~s~~~dg~i~iwd~~~ 508 (860)
.++ ..+++..-.||...|..+.|+|+..+ +++++.|+.+.||.+..
T Consensus 359 --------~dg---------ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 --------EDG---------PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred --------ccC---------CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 010 12344555689999999999998876 77889999999999753
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.4e-24 Score=184.08 Aligned_cols=245 Identities=14% Similarity=0.190 Sum_probs=195.4
Q ss_pred CcEEEe-CCCEEEee-eCCeEEEEECCCCcE---EeeccCCccCeeEEEEcC--CCCEEEEEcCCCcEEEEEcccCeEEE
Q 038577 16 GNAVLS-QNTKLISP-VGNRVSVTDLIKSKT---VTLPVESSSNICRIAVSP--DGTFLLTVDENQRCHFINLHCHVVLH 88 (860)
Q Consensus 16 ~~~~~s-dg~~l~~~-~~~~i~v~d~~~~~~---~~~~~~h~~~v~~va~sp--dg~~la~~~~d~~i~vwd~~~~~~~~ 88 (860)
+.+.+. -|++||++ +|+.|+|+.++++.+ ...+.||.++|..++|.. -|.+||+++.||.|+||.-++|+--.
T Consensus 15 Hda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k 94 (299)
T KOG1332|consen 15 HDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK 94 (299)
T ss_pred hHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh
Confidence 345566 88999987 578899999987654 566789999999999986 89999999999999999988874332
Q ss_pred Ee--e-cCCceeEEEECCC--CCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC---C------
Q 038577 89 RV--R-FKYPVNAILFSPN--GKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD---S------ 153 (860)
Q Consensus 89 ~~--~-~~~~v~~~~fspd--g~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d---~------ 153 (860)
.. . |...|++++|.|. |-.||++ +||.|.|.+..+... +........|.-.|++++|.|- |
T Consensus 95 ~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~----w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 95 AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG----WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC----ccchhhhhccccccceeeecCcCCCccccccC
Confidence 22 2 8999999999995 4677777 899999998876521 1123456789999999999985 4
Q ss_pred -----CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCC
Q 038577 154 -----NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDG 228 (860)
Q Consensus 154 -----~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~ 228 (860)
+.|++|+.|..|+||+.+.+ +- .....+.+|.+.|+.++|.|.-.. ...+|++++.||++.+|..+...
T Consensus 171 ~~~~~krlvSgGcDn~VkiW~~~~~-~w---~~e~~l~~H~dwVRDVAwaP~~gl-~~s~iAS~SqDg~viIwt~~~e~- 244 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCDNLVKIWKFDSD-SW---KLERTLEGHKDWVRDVAWAPSVGL-PKSTIASCSQDGTVIIWTKDEEY- 244 (299)
T ss_pred cccccceeeccCCccceeeeecCCc-ch---hhhhhhhhcchhhhhhhhccccCC-CceeeEEecCCCcEEEEEecCcc-
Confidence 56999999999999999986 33 345669999999999999997632 22289999999999999887432
Q ss_pred CCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577 229 KIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP 294 (860)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~ 294 (860)
..|.. ..+...+..+..+.|++.|+.|++++.|+.+.+|.-.
T Consensus 245 ---------------------e~wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 ---------------------EPWKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ---------------------Ccccc---cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 24533 3333456679999999999999999999999999764
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.7e-23 Score=203.28 Aligned_cols=329 Identities=13% Similarity=0.195 Sum_probs=252.6
Q ss_pred ceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc
Q 038577 247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA 326 (860)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 326 (860)
.+++.+.......+.+|.+.|.++...|.|.+|++|+.||++++|.+.++.++....... .|.+++|+|.+..-+.+..
T Consensus 383 ~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 383 KDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred hhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEE
Confidence 344555555667788999999999999999999999999999999999999999887664 8999999998865444433
Q ss_pred cCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE----eCCCcEEEEECCCC----eeEEEeecCCCceEEEE
Q 038577 327 KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG----ADDNKVKVWTVSSG----FCFVTFTEHTNAVTALH 398 (860)
Q Consensus 327 ~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~ 398 (860)
....+.+.+..-|..+... +....|+.+ ..++.+..|.-... .-+.....|...|..+.
T Consensus 462 ~~~~~~ivnp~~G~~~e~~-------------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt 528 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVG-------------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT 528 (733)
T ss_pred ecCceEEeCccccchhhhc-------------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee
Confidence 3345666654444221110 011112221 23556777865421 11344556899999999
Q ss_pred EeeCCCEEEEEeCCC---cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC
Q 038577 399 FMANNHSLLSASLDG---TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG 475 (860)
Q Consensus 399 ~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 475 (860)
|+..|.+|++...++ .|.++++...+....|.. ....+.++.|+|...++++++.. .|++||+..+++++.+..
T Consensus 529 WHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq~--~vRiYdL~kqelvKkL~t 605 (733)
T KOG0650|consen 529 WHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQR--SVRIYDLSKQELVKKLLT 605 (733)
T ss_pred eecCCceEEEeccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEecc--ceEEEehhHHHHHHHHhc
Confidence 999999999887653 688899877666544433 34578999999999999999988 699999999988888887
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC----
Q 038577 476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN---- 550 (860)
Q Consensus 476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~---- 550 (860)
....|..++.+|.|.-|+.++.|+.+..+|+.-.... ..+.-|...+++++|++.-.++++|+.||++.||.-.-
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl 685 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDL 685 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhh
Confidence 8889999999999999999999999999999766433 44556999999999999999999999999999985321
Q ss_pred --C---ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577 551 --G---ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMY 608 (860)
Q Consensus 551 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vw 608 (860)
. -++..+++|... ....|...+|.|...||++++.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~----------------~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKT----------------NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceee----------------cccceEeecccCCCceEEecCCCceEEee
Confidence 1 234556666542 12358889999999999999999999998
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.8e-22 Score=179.65 Aligned_cols=298 Identities=21% Similarity=0.332 Sum_probs=230.8
Q ss_pred ccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCCce------------eE---EEEeecCceeEEEEEeeCCCEE
Q 038577 258 DDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPDFV------------CI---HLLSISREKITTAVFNELGNWL 321 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~------------~~---~~~~~~~~~i~~~~~s~~~~~l 321 (860)
.....|.+.|.++.+.+ .|+++++|+.||.|.+||+++.. ++ ..-..|.-.|..+.|-|-..-+
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 33456889999999987 58899999999999999997533 11 1122355679999999988888
Q ss_pred EEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCC---CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577 322 VFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPD---SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398 (860)
Q Consensus 322 ~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 398 (860)
+++++-|.++++||..+-+....+. ..+.|.+-+++|- ..++|+|..+-.|++-|+.+|.....+.+|.+.|.++.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8888888999999999987776664 3456777788873 34788899999999999999999999999999999999
Q ss_pred EeeCCCE-EEEEeCCCcEEEEEcccc-ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc---eEEEe
Q 038577 399 FMANNHS-LLSASLDGTVRAWDLFRY-RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR---LLDIL 473 (860)
Q Consensus 399 ~~~~~~~-l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~---~~~~~ 473 (860)
|+|...+ |++|+.||.+++||++.. .+. .+.|...++ .++.-
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf---------------------------------~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCF---------------------------------RVLDQHNTKRPPILKTN 242 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeeccccee---------------------------------EEeecccCccCcccccc
Confidence 9998764 679999999999999753 222 233332222 12233
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc---cCCC---eEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP---HTHD---VLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 474 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~---v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
..|.+.|.+++|+.++.++++++.|..+++|+..+++......+ |... -..+. +-+...++---.++.+.++.
T Consensus 243 ~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~ 321 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLN 321 (397)
T ss_pred ccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEE
Confidence 46999999999999999999999999999999988874433221 1111 11122 33344444444568899999
Q ss_pred CCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 548 PLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
+-+|..+..+.+|-. .|.+.++.|+=+...+|+.|+.|..|-.
T Consensus 322 ~~sgs~ir~l~~h~k--------------------~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 322 LLEGSFVRRLSTHLK--------------------RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccCceEEEeeecccc--------------------eeeEEeecCchhhhhccccCCccccccc
Confidence 999999999998843 5999999999999999999999999976
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=7e-22 Score=177.13 Aligned_cols=302 Identities=16% Similarity=0.226 Sum_probs=230.1
Q ss_pred EeecCCCcEEEEEEccC-CCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC
Q 038577 184 LLLGHRDSVVGCFFSVD-KKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ 262 (860)
Q Consensus 184 ~~~~h~~~i~~~~~~~~-~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (860)
....|.+.|+++.+.+. ++ ++++|+.||.+.+||++....... . .-..+.-.+..+....+
T Consensus 38 ~~r~HgGsvNsL~id~tegr-----ymlSGgadgsi~v~Dl~n~t~~e~-----------s--~li~k~~c~v~~~h~~~ 99 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGR-----YMLSGGADGSIAVFDLQNATDYEA-----------S--GLIAKHKCIVAKQHENG 99 (397)
T ss_pred eeccCCCccceeeeccccce-----EEeecCCCccEEEEEeccccchhh-----------c--cceeheeeeccccCCcc
Confidence 34568899999988764 44 999999999999999987432000 0 00011112233455567
Q ss_pred CCCceEEEEecCC-CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCC--CEEEEEEccCCcEEEEEccCc
Q 038577 263 APSKVTACDYHRG-LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELG--NWLVFGCAKLGQLLVWEWRSE 339 (860)
Q Consensus 263 ~~~~v~~~~~~~~-~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~l~~~~~~~g~i~v~d~~~~ 339 (860)
|.-.|..+.|-|- ..++.+++.|..+++||..+.+....+... +.|.+-+++|-. ..|++++.++.+|++-|+.+|
T Consensus 100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 8888999999984 557778999999999999998888777654 478888888754 567777777799999999999
Q ss_pred eEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-eeEEE--------------eecCCCceEEEEEeeCC
Q 038577 340 SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG-FCFVT--------------FTEHTNAVTALHFMANN 403 (860)
Q Consensus 340 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-~~~~~--------------~~~~~~~v~~i~~~~~~ 403 (860)
.....+.+|...|.++.|+|... .|++|+.||.|++||++.. .+... -..|.+.|.+++|+.++
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc
Confidence 99999999999999999999876 5688999999999999743 23222 23577889999999999
Q ss_pred CEEEEEeCCCcEEEEEccccceeeEeeCC-----CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc
Q 038577 404 HSLLSASLDGTVRAWDLFRYRNFRTFTTP-----SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478 (860)
Q Consensus 404 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~ 478 (860)
.++++++.|..+++|+..+++....-..+ ....-..+. +.+...++.--.++ .+.++++-++..++.+.+|..
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~-~lall~~~sgs~ir~l~~h~k 336 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG-SLALLNLLEGSFVRRLSTHLK 336 (397)
T ss_pred hhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC-eEEEEEccCceEEEeeecccc
Confidence 99999999999999999887643221111 000111122 33333343333444 899999999999999999999
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577 479 PVHGLVFSPTNATLASSSWDKTVRLWNV 506 (860)
Q Consensus 479 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 506 (860)
.|.+.++.|+-+...+++.|+.|..|-.
T Consensus 337 ~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 337 RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeeEEeecCchhhhhccccCCccccccc
Confidence 9999999999999999999999999986
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.7e-22 Score=179.04 Aligned_cols=283 Identities=13% Similarity=0.209 Sum_probs=224.9
Q ss_pred EEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE
Q 038577 192 VVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD 271 (860)
Q Consensus 192 i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 271 (860)
-.++.|++.|. +|++|+.||.+.+||+.+.. ....+.+|..+|++++
T Consensus 26 a~~~~Fs~~G~-----~lAvGc~nG~vvI~D~~T~~----------------------------iar~lsaH~~pi~sl~ 72 (405)
T KOG1273|consen 26 AECCQFSRWGD-----YLAVGCANGRVVIYDFDTFR----------------------------IARMLSAHVRPITSLC 72 (405)
T ss_pred cceEEeccCcc-----eeeeeccCCcEEEEEccccc----------------------------hhhhhhccccceeEEE
Confidence 67899999999 99999999999999998742 2456778899999999
Q ss_pred ecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc--
Q 038577 272 YHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-- 349 (860)
Q Consensus 272 ~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-- 349 (860)
|+++|+.|++++.|..|.+||+..+.+++.++.. .+|..+.|+|-....++++--+..-.+-+...+..........
T Consensus 73 WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d 151 (405)
T KOG1273|consen 73 WSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGD 151 (405)
T ss_pred ecCCCCEeeeecCCceeEEEeccCCCceeEEEcc-CccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccc
Confidence 9999999999999999999999999988888765 5899999999766555554333334444444322211111111
Q ss_pred --cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC-CceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q 038577 350 --FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT-NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF 426 (860)
Q Consensus 350 --~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 426 (860)
....+..|.+.|+++++|...|.+.+++..+.+++..++... ..|..+.++..|+.++.-+.|+.|+.|++..-...
T Consensus 152 ln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 152 LNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred cccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 112334688999999999999999999999999999887766 78999999999999999999999999998632111
Q ss_pred ---------eEe-eCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCCCEEEEE
Q 038577 427 ---------RTF-TTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-GPVHGLVFSPTNATLASS 495 (860)
Q Consensus 427 ---------~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~ 495 (860)
..+ ..-...+..+++|+.+|.++++++...+.+++|....|.+++.+.|.. ....++.|+|-...+++-
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 111 011233567899999999999999888899999999999999999887 567789999998888887
Q ss_pred eCCCcEEEEEccCC
Q 038577 496 SWDKTVRLWNVFEG 509 (860)
Q Consensus 496 ~~dg~i~iwd~~~~ 509 (860)
..|.+++|.....
T Consensus 312 -~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 312 -ASGVVYIWAVVQV 324 (405)
T ss_pred -cCCceEEEEeecc
Confidence 6889999987544
No 143
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=6.3e-23 Score=178.98 Aligned_cols=252 Identities=16% Similarity=0.224 Sum_probs=203.9
Q ss_pred EEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc--CCCCCccceEEEE
Q 038577 135 RTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV--DKKTDKVNRIYTI 212 (860)
Q Consensus 135 ~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~--~~~~~~~~~l~s~ 212 (860)
..-..|.+.|..+...--|++||+++.|++|+|+....... ......|.||.++|+.++|.. -|. .|+++
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~---s~ll~~L~Gh~GPVwqv~wahPk~G~-----iLASc 76 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ---SKLLAELTGHSGPVWKVAWAHPKFGT-----ILASC 76 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC---ceeeeEecCCCCCeeEEeecccccCc-----EeeEe
Confidence 34467999999988888899999999999999999987732 256789999999999999966 566 99999
Q ss_pred cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC--CCEEEEEEcCCeEEE
Q 038577 213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG--LDMVVVGFSNGVFGL 290 (860)
Q Consensus 213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~g~i~~ 290 (860)
+.||.|.+|.-+++. | .+......|...|.+++|.|. |-.|++++.||.|.+
T Consensus 77 sYDgkVIiWke~~g~------------------------w--~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv 130 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGR------------------------W--TKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV 130 (299)
T ss_pred ecCceEEEEecCCCc------------------------h--hhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence 999999999887753 3 234556778899999999986 567899999999999
Q ss_pred EECCCc---eeEEEEeecCceeEEEEEeeC---C-----------CEEEEEEccCCcEEEEEccCceE--EEEecCcccC
Q 038577 291 YQMPDF---VCIHLLSISREKITTAVFNEL---G-----------NWLVFGCAKLGQLLVWEWRSESY--ILKQQGHYFD 351 (860)
Q Consensus 291 ~~~~~~---~~~~~~~~~~~~i~~~~~s~~---~-----------~~l~~~~~~~g~i~v~d~~~~~~--~~~~~~~~~~ 351 (860)
++..+. ........|.-.+++++|.|. | +.|++++.+ ..|+||+..++.. ...+.+|.+-
T Consensus 131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD-n~VkiW~~~~~~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD-NLVKIWKFDSDSWKLERTLEGHKDW 209 (299)
T ss_pred EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc-cceeeeecCCcchhhhhhhhhcchh
Confidence 988654 223445667788999999986 4 457777665 9999999988643 3346899999
Q ss_pred eEEEEEcCCC----CEEEEEeCCCcEEEEECCCC---eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577 352 VNCLAYSPDS----QLLATGADDNKVKVWTVSSG---FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF 421 (860)
Q Consensus 352 v~~~~~s~~~----~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 421 (860)
|+.++|.|.- .+||++++||++.||..+.. -....+......+..+.|+..|+.|+.++.|+.+.+|.-.
T Consensus 210 VRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 210 VRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9999999964 48999999999999987521 1122334456789999999999999999999999999754
No 144
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2.4e-22 Score=192.04 Aligned_cols=261 Identities=15% Similarity=0.258 Sum_probs=209.4
Q ss_pred EeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccc---eeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecC
Q 038577 89 RVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVF---AFELIRTLADCNDKVTALNWSPDS-NYLLVGSKD 162 (860)
Q Consensus 89 ~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~---~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~d 162 (860)
.+.|.+.|+.+.+-|+...|+++ ..+.+.|||......... ...+-.++.+|.+.-.+++|++.. -+|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 44599999999999988666654 778999999875332111 233445889999988899999965 579999999
Q ss_pred CeEEEEeeccccc-CcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCC
Q 038577 163 LAVRLFYVKEKLK-GIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPS 241 (860)
Q Consensus 163 g~v~vwd~~~~~~-~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~ 241 (860)
+.|++||+..... .........+.+|...|..++|++-... .+.+++.|+.+.+||++++..
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~----lF~sv~dd~~L~iwD~R~~~~------------- 262 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED----LFGSVGDDGKLMIWDTRSNTS------------- 262 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchh----hheeecCCCeEEEEEcCCCCC-------------
Confidence 9999999987632 1122456778999999999999987664 899999999999999986311
Q ss_pred CCCCcceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCCce-eEEEEeecCceeEEEEEeeCCC
Q 038577 242 PGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPDFV-CIHLLSISREKITTAVFNELGN 319 (860)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~~~-~~~~~~~~~~~i~~~~~s~~~~ 319 (860)
........|.+.+.|++|+|.+ ..||+|+.|++|.+||+++.. ++..+..|...|..+.|+|...
T Consensus 263 -------------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 263 -------------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred -------------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence 1234456788999999999965 567789999999999998754 6788999999999999999998
Q ss_pred EEEEEEccCCcEEEEEccCc--------------eEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 038577 320 WLVFGCAKLGQLLVWEWRSE--------------SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVS 379 (860)
Q Consensus 320 ~l~~~~~~~g~i~v~d~~~~--------------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~ 379 (860)
.++++++.|+.+.+||+..- +.+..-.||...|..+.|+|+.. .+++.+.|+.+.||.+.
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 88888888899999998642 22344578999999999999876 56778899999999976
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=2.8e-24 Score=215.92 Aligned_cols=255 Identities=22% Similarity=0.390 Sum_probs=219.6
Q ss_pred EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEE
Q 038577 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAY 357 (860)
Q Consensus 278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 357 (860)
.++.+...-.+++|+.... ..|...+.++..-..++.++.++.+ ..+-+|.+.....+..+.+|..+|.++.|
T Consensus 6 ~~m~~~~~t~Lr~~~~~~~------~~hsaav~~lk~~~s~r~~~~Gg~~-~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTREF------VAHSAAVGCLKIRKSSRSLVTGGED-EKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred ccceeeeeeccccccchhh------hhhhhhhceeeeeccceeeccCCCc-eeeccccccCCchhheeeccCCcceeeec
Confidence 3344444455666765322 2344456666665556666666554 77778988777777778999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcE
Q 038577 358 SPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF 437 (860)
Q Consensus 358 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 437 (860)
+++...|++|+.+|+|++||++.++.++++.+|...+.++.|+|-+.+.++++.|+.+++||.+...+...+.. +...+
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv 157 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTRVV 157 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-Cccee
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888877 66778
Q ss_pred EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc
Q 038577 438 VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP 517 (860)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 517 (860)
..+.|+|+|++++.++.|. .+++||+..|+....|++|.+.+..+.|+|..-++++|+.|+++++||+++.+.+.....
T Consensus 158 ~~l~lsP~Gr~v~~g~ed~-tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGEDN-TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred EEEeecCCCceeeccCCcc-eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 9999999999999999988 999999999999999999999999999999999999999999999999998877776667
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCC
Q 038577 518 HTHDVLTVVYRPDGRQLACSTLDG 541 (860)
Q Consensus 518 ~~~~v~~~~~s~~~~~l~~~~~dg 541 (860)
....|.+.+|+|++..+++|....
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 788999999999999999886553
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=4.8e-24 Score=214.24 Aligned_cols=247 Identities=27% Similarity=0.455 Sum_probs=221.0
Q ss_pred CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEE
Q 038577 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLS 408 (860)
Q Consensus 329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 408 (860)
-.+++||.+. +..|...+.++..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.++.|+++...|++
T Consensus 14 t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaa 87 (825)
T KOG0267|consen 14 TKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAA 87 (825)
T ss_pred eccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcc
Confidence 5566777543 3468888888888778889999999999999999888888889999999999999999999999
Q ss_pred EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 038577 409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT 488 (860)
Q Consensus 409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~ 488 (860)
|+.+|+|++||+...+.++++.... ..+.++.|+|-+.+.+.|+.|. .+.+||.+..-+.+.+.+|...|..+.|+|+
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~-~~~~sv~f~P~~~~~a~gStdt-d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHL-LNITSVDFHPYGEFFASGSTDT-DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccc-cCcceeeeccceEEeccccccc-cceehhhhccCceeeecCCcceeEEEeecCC
Confidence 9999999999999999888776554 4678899999999999999998 9999999988899999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcc
Q 038577 489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRL 568 (860)
Q Consensus 489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 568 (860)
|++++++++|.+++|||...++...++..|.+.+.++.|+|..-++++|+.|+++++||+++.+.+........
T Consensus 166 Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~------ 239 (825)
T KOG0267|consen 166 GRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD------ 239 (825)
T ss_pred CceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC------
Confidence 99999999999999999999998888888999999999999999999999999999999999888877766543
Q ss_pred ccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577 569 MTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK 603 (860)
Q Consensus 569 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 603 (860)
.|.+..|+|+|+.+++|....
T Consensus 240 --------------~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 240 --------------GVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --------------CceeeeecCCceeeecCchhh
Confidence 599999999999998876543
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=4.4e-22 Score=191.15 Aligned_cols=294 Identities=16% Similarity=0.198 Sum_probs=232.1
Q ss_pred EEEEEcCCeEEEEECCCceeEEEEeec--CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEecCcccCeEE
Q 038577 279 VVVGFSNGVFGLYQMPDFVCIHLLSIS--REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQQGHYFDVNC 354 (860)
Q Consensus 279 l~~~~~~g~i~~~~~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~~~~~~~v~~ 354 (860)
+.+++....+.+||....+....+..+ ...+.++.|+.....++...+.|..+++|.-... +....-......-.|
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C 84 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC 84 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHH
Confidence 344455567899998766555444333 2348888898877655555555677888864433 111111111223445
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC
Q 038577 355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS 434 (860)
Q Consensus 355 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 434 (860)
++......++++|+..+.|+|||++...+.+.+++|.+.|+++.++....+|++++..|.|.+..+.++.....+..+..
T Consensus 85 v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg 164 (673)
T KOG4378|consen 85 VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG 164 (673)
T ss_pred HhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC
Confidence 55555668999999999999999998888889999999999999999889999999999999999999999999998888
Q ss_pred CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-ecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcce
Q 038577 435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-LSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGS 512 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~ 512 (860)
..+.-+.++|..++++....|.|.|.+||+....+... ...|..|...|+|+|.. .+|++.+.|+.|.+||+.... .
T Consensus 165 qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s 243 (673)
T KOG4378|consen 165 QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-S 243 (673)
T ss_pred CeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc-c
Confidence 88889999999998888777777999999998776654 46799999999999964 578899999999999998665 4
Q ss_pred eEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecccccCCCccccccccccccCCCCcEEEEEEec
Q 038577 513 VESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA 591 (860)
Q Consensus 513 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 591 (860)
........+.+.++|+++|.+|+.|...|.|..||++.. .++.++..|.. .|++++|-|
T Consensus 244 ~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~--------------------sVt~vafq~ 303 (673)
T KOG4378|consen 244 TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA--------------------SVTRVAFQP 303 (673)
T ss_pred cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc--------------------ceeEEEeee
Confidence 555567788999999999999999999999999999864 56677777764 489999977
Q ss_pred CC
Q 038577 592 DG 593 (860)
Q Consensus 592 ~g 593 (860)
.-
T Consensus 304 s~ 305 (673)
T KOG4378|consen 304 SP 305 (673)
T ss_pred cc
Confidence 64
No 148
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9.6e-23 Score=206.73 Aligned_cols=283 Identities=22% Similarity=0.348 Sum_probs=212.5
Q ss_pred eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEec---CcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 038577 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQQ---GHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVS 379 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~~---~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~ 379 (860)
....+...++-..++.++. ..+.+|.+..... ..... .-...+..+.|.. +.++|||++..|.|.+||+.
T Consensus 41 ~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR--SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccceEeecCCcceeEEecc--cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 4556666777777777765 4667776654321 11111 1112244566664 46799999999999999998
Q ss_pred C---CeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577 380 S---GFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD 455 (860)
Q Consensus 380 ~---~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (860)
. .+.+..+..|...+.++.|++.. .+|++|+.||.|++||++..+...++.. ....+..+.|+|.....+++..|
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecC
Confidence 6 56677889999999999998854 6889999999999999999888777766 44578999999976655555556
Q ss_pred CCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc-eeEEcccCCCeEEEEEeeCCC-
Q 038577 456 SFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG-SVESFPHTHDVLTVVYRPDGR- 532 (860)
Q Consensus 456 ~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~- 532 (860)
+|.+++||++.. ++...+.+|.++|.++.|+|++.+|||||.|++|+|||+.+.+. .........++..+.|-|+.+
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 669999999864 56678889999999999999999999999999999999986653 333445678899999999766
Q ss_pred EEEEEe--CCCeEEEEeCCCCc-eeEEEecccccCCCccccccccccccCCCCcEEEEEEec-CCCEEEEecCCCeEEEE
Q 038577 533 QLACST--LDGQIHFWDPLNGE-LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGSYILAGGSSKYICMY 608 (860)
Q Consensus 533 ~l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~v~vw 608 (860)
.||+++ .|-.|+|||+...- +..++..|.+. ++.++|.. |-..|.+++.||+|..-
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~--------------------vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS--------------------VTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCcc--------------------ccceeccCCCceeeEeecCccHHHHh
Confidence 456654 46779999997653 45567777763 77888855 44577788888877655
Q ss_pred ECCCc
Q 038577 609 DVADQ 613 (860)
Q Consensus 609 d~~~~ 613 (860)
.++++
T Consensus 338 ~~kna 342 (839)
T KOG0269|consen 338 LFKNA 342 (839)
T ss_pred hhhcc
Confidence 44443
No 149
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=5.6e-19 Score=193.39 Aligned_cols=372 Identities=29% Similarity=0.537 Sum_probs=297.0
Q ss_pred EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577 184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA 263 (860)
Q Consensus 184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (860)
....|...+..+.+.+.+. .++.++.|+.+.+|+...... ....+...
T Consensus 60 ~~~~~~~~i~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~---------------------------~~~~~~~~ 107 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGE-----LLLSGSSDGTIKLWDLDNGEK---------------------------LIKSLEGL 107 (466)
T ss_pred eeeeccceEEEEEECCCCc-----EEEEecCCCcEEEEEcCCCce---------------------------eEEEEecc
Confidence 5678999999999999998 899999999999999887530 00111111
Q ss_pred C-CceEEEEe-cCCCC-EEEEE-EcCCeEEEEECCC-ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577 264 P-SKVTACDY-HRGLD-MVVVG-FSNGVFGLYQMPD-FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338 (860)
Q Consensus 264 ~-~~v~~~~~-~~~~~-~l~~~-~~~g~i~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~ 338 (860)
. ..+..+.+ .+++. .++.. ..++.+.+|+... ......+..+...+..++|+|++..++.+...++.+++|+...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (466)
T COG2319 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187 (466)
T ss_pred CCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC
Confidence 1 35666666 78887 45543 4489999999987 7888889999999999999999997777754369999999999
Q ss_pred ceEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEE-EeecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577 339 ESYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFV-TFTEHTNAVTALHFMANNHSLLSASLDGTVR 416 (860)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 416 (860)
+..+..+.+|...+.+++|+|++. .+++++.|+.|++||...+.... .+..|.... ...|++++..+++++.|+.++
T Consensus 188 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEE
Confidence 888888888999999999999998 55555899999999988888877 688888875 448999998889999999999
Q ss_pred EEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEE
Q 038577 417 AWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLA 493 (860)
Q Consensus 417 ~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~ 493 (860)
+|++..... ...+ ..+...+.++.+.|++..+++++.++ .+.+||..+........ .|...+..+.+.+++..++
T Consensus 267 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (466)
T COG2319 267 LWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDG-TVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344 (466)
T ss_pred EeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCC-cEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEE
Confidence 999987665 4444 44467889999999998888888885 89999999888777665 7888899999943335565
Q ss_pred EE-eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEE-EeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577 494 SS-SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLAC-STLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD 571 (860)
Q Consensus 494 s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 571 (860)
.+ ..|+.+.+|++.... ..........+..+.+++ ...+.. +..++.+.+|+............+.
T Consensus 345 ~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 412 (466)
T COG2319 345 SGGSDDGTIRLWDLRTGK-PLKTLEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT---------- 412 (466)
T ss_pred EeecCCCcEEeeecCCCc-eeEEecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCC----------
Confidence 55 678999999998876 222223333388999998 544444 6889999999999988877776652
Q ss_pred cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD 612 (860)
Q Consensus 572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~ 612 (860)
..+....+++++.++++++.++.+.+|+..+
T Consensus 413 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 413 ----------SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ----------CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 1489999999999999999999999999988
No 150
>PF04192 Utp21: Utp21 specific WD40 associated putative domain ; InterPro: IPR007319 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp21 is a component of the SSU processome, which is required for pre-18S rRNA processing. It interacts with Utp18 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=99.89 E-value=3.1e-23 Score=192.35 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=141.4
Q ss_pred CCCCCCCCccceeEEEECCCCCeEEEeccccEE-EEecCCccccCCcccC-ccCCHHHHHhh------cCcCCcHHHHHH
Q 038577 674 ALPNRGRPTIQTKCLKIAPTGRNFVAATTEGVL-VYSIDESFIFDPTDLD-IDVTPEAVDAA------LNEDQPKRALIL 745 (860)
Q Consensus 674 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~-i~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~l~~ 745 (860)
.||.||||+++|+.++-+| ||+++..|+- .+.. .......+ ........... .....+.+.|..
T Consensus 48 ~IK~RNKPkeppKkPe~AP----FFLpt~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~f~~lL~~ 119 (237)
T PF04192_consen 48 VIKERNKPKEPPKKPEKAP----FFLPTLPGLEPRFQD----AFESEEEEEEEEERSRLRKLKKDNSLDFESEFTRLLRS 119 (237)
T ss_pred HHHHhCCCCCCCCCcCCCC----cccCcCCCCCccccc----cccccccccchhhhhhhhhcccccCccccCHHHHHHHh
Confidence 4678999999999999999 9999988753 1100 00000011 11111111111 134566777777
Q ss_pred HHhcCChHHHHHHhHhcCCCccchhcccCC------HHHHHHHHHHHHhhhccCCChhhHHHHHHHHHHHHhhhhhhccc
Q 038577 746 SLRLNEDNLIKKCIFAISPVDIPAVASSIP------YRYMQRLIEALSDLLESCPHLEFMLRWCQELCKTHGNTIQQNSR 819 (860)
Q Consensus 746 ~~~~~~~~~~~~~l~~~~~~~i~~~~~~l~------~~~~~~ll~~l~~~l~~~~~~~~~~~~l~~~l~~H~~~l~~~~~ 819 (860)
+...++|..++++|++++|+.|+.+|++|. ..++..||++|.++|++++|||++|+||.+|||+||..|+.+++
T Consensus 120 ~~~~~dy~~~~~~LkslsPS~iDlEIRsL~~~~~~~~~~l~~Fl~~l~~~L~~~~dfElvQa~l~vFLk~Hgd~i~~~~~ 199 (237)
T PF04192_consen 120 ASESEDYSEFLEYLKSLSPSAIDLEIRSLSPESGGSYEELVSFLRFLTYRLKSRRDFELVQAYLSVFLKVHGDVIMESEE 199 (237)
T ss_pred hcccccHHHHHHHHHhCChhHHHHHHHhccCccCCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 788899999999999999999999999997 99999999999999999999999999999999999999999872
Q ss_pred --chhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhh
Q 038577 820 --NLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLCS 855 (860)
Q Consensus 820 --~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~ 855 (860)
+++..|.+|.+.+++.|++|+++++||+|+++|+++
T Consensus 200 ~~~L~~~l~~l~~~q~~~w~~L~~l~~~~~cvv~fl~~ 237 (237)
T PF04192_consen 200 EEELREALEELREAQESEWKRLDDLFQYCSCVVSFLRS 237 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence 399999999999999999999999999999999985
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=1.6e-21 Score=193.58 Aligned_cols=422 Identities=16% Similarity=0.154 Sum_probs=262.2
Q ss_pred EEEcC---CCCEEEEEcCCCcEEEEEcccCeEE------EE-eecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCc
Q 038577 58 IAVSP---DGTFLLTVDENQRCHFINLHCHVVL------HR-VRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKK 126 (860)
Q Consensus 58 va~sp---dg~~la~~~~d~~i~vwd~~~~~~~------~~-~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~ 126 (860)
..|++ ....||.+.++|.|.++|....... .. +.|...|.++.|-|....|++. +|.++++||+++.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55654 2357888999999999998754322 22 2289999999999944555555 899999999998873
Q ss_pred ccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeeccccc---------------C------cccccceE
Q 038577 127 EVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLK---------------G------IHTNKPFL 184 (860)
Q Consensus 127 ~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~---------------~------~~~~~~~~ 184 (860)
. -...+.||.+.|.+++|.|+. ..+++|+.||.|.|||+.-... . ........
T Consensus 135 ~-----G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 135 V-----GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred e-----cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 1 122378999999999999976 5788999999999999865420 0 00011122
Q ss_pred eecCCCcEEE---EEEccCCCCCccceEEEEcC-CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577 185 LLGHRDSVVG---CFFSVDKKTDKVNRIYTIAR-DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF 260 (860)
Q Consensus 185 ~~~h~~~i~~---~~~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (860)
...+...|.+ +.+..|.. .|++++. |+.|+|||+............ ....+
T Consensus 210 ~kA~s~ti~ssvTvv~fkDe~-----tlaSaga~D~~iKVWDLRk~~~~~r~ep~--------------------~~~~~ 264 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFKDES-----TLASAGAADSTIKVWDLRKNYTAYRQEPR--------------------GSDKY 264 (720)
T ss_pred cccccCceeeeeEEEEEeccc-----eeeeccCCCcceEEEeecccccccccCCC--------------------cccCc
Confidence 3345556666 66667777 8999988 999999999976442111110 01111
Q ss_pred cC---CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCcee--EEEEeecCc--eeEEEEEeeCCCEEEEEEccCCcEEE
Q 038577 261 SQ---APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC--IHLLSISRE--KITTAVFNELGNWLVFGCAKLGQLLV 333 (860)
Q Consensus 261 ~~---~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~--~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~~g~i~v 333 (860)
.. ..-.+.++.....|.+|++.+.|+.|+.|++.+... ...+.++.. -...-..+|++.+++.++.+ ...++
T Consensus 265 ~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd-~~ayi 343 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSD-EQAYI 343 (720)
T ss_pred cCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCC-cceee
Confidence 11 234678888889999999999999999999975432 222222221 12234568999999999887 99999
Q ss_pred EEccCceE-EEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeE--------------EEeecCCCceEEE
Q 038577 334 WEWRSESY-ILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCF--------------VTFTEHTNAVTAL 397 (860)
Q Consensus 334 ~d~~~~~~-~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~--------------~~~~~~~~~v~~i 397 (860)
|.+.+.+. ...+.+|...|++++|.|.. .-+++++.|..+++|++..+-.. ..+++|...+..+
T Consensus 344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv 423 (720)
T KOG0321|consen 344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNV 423 (720)
T ss_pred eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccc
Confidence 99987644 34457899999999998843 35777799999999999654322 2233344333333
Q ss_pred EEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC---CeEEEEECCCCceEEE--
Q 038577 398 HFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS---FEIFVWSMKTGRLLDI-- 472 (860)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~~~~~~~-- 472 (860)
.++-.+.+.. ...+..++|.. ...++..|++.-...+.... ..|...+....++...
T Consensus 424 ~ss~~~t~~~--pR~~~~r~~ss----------------P~s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~ 485 (720)
T KOG0321|consen 424 NSSLRKTYKD--PREGMNRISSS----------------PVSLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRG 485 (720)
T ss_pred cccccccccc--hhhhccccccC----------------ccchhcCcCCcccccCCCcccccccceecchhccCcccccc
Confidence 3332221111 11223333322 22333344433332221110 1344444443333222
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEEccCCcceeEEcccCCCeEEEEEee
Q 038577 473 LSGHEGPVHGLVFSPTNATLASSSW-----------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP 529 (860)
Q Consensus 473 ~~~h~~~v~~l~~s~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 529 (860)
-.+|-..|....+++.+..+++.+. ++.++.|.............. .....+.|+|
T Consensus 486 s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~s~l~pps~~~r~a-r~~~r~ifs~ 552 (720)
T KOG0321|consen 486 SGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPNSSLHPPSANLREA-RKKSRLIFSP 552 (720)
T ss_pred ccccccccccCCCccccccccccCcccccCCCCCcCcccccccccccCCchhhhccc-ccccceeccC
Confidence 1235666777777777777888776 778888876554422222211 1445555555
No 152
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.89 E-value=1.5e-18 Score=190.08 Aligned_cols=374 Identities=27% Similarity=0.442 Sum_probs=292.5
Q ss_pred EeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccc-cceEeecCC-CcEEEEEE-ccCCCCCccceEEEE
Q 038577 136 TLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTN-KPFLLLGHR-DSVVGCFF-SVDKKTDKVNRIYTI 212 (860)
Q Consensus 136 ~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~-~~~~~~~h~-~~i~~~~~-~~~~~~~~~~~l~s~ 212 (860)
....|...+.++.|.+.+..++.++.|+.+.+|+.... . ....+.++. ..+..+.+ .+++.. .++..
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 129 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNG------EKLIKSLEGLHDSSVSKLALSSPDGNS----ILLAS 129 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCC------ceeEEEEeccCCCceeeEEEECCCcce----EEecc
Confidence 45678899999999999999999999999999999887 3 455555544 36777777 666541 34443
Q ss_pred cC-CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc-CCeEEE
Q 038577 213 AR-DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS-NGVFGL 290 (860)
Q Consensus 213 ~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~ 290 (860)
+. |+.+.+|+..... .....+..|...+..+.++|++..++.+.. ++.+.+
T Consensus 130 ~~~d~~~~~~~~~~~~---------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 182 (466)
T COG2319 130 SSLDGTVKLWDLSTPG---------------------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182 (466)
T ss_pred CCCCccEEEEEecCCC---------------------------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEE
Confidence 44 8999999988610 123445677888999999999998888885 999999
Q ss_pred EECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE-EecCcccCeEEEEEcCCCCEEEEEeC
Q 038577 291 YQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL-KQQGHYFDVNCLAYSPDSQLLATGAD 369 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~ 369 (860)
|+.........+..+...+.+++|+|++..++.+...++.+.+||...+.... .+..|.... ...|+|++..+++++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (466)
T COG2319 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS 261 (466)
T ss_pred EEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC
Confidence 99998888888888999999999999998666665667999999988777777 577887775 4489999989999999
Q ss_pred CCcEEEEECCCCee-EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee-CCCCCcEEEEEECCCCC
Q 038577 370 DNKVKVWTVSSGFC-FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT-TPSSRQFVSLASDQSGE 447 (860)
Q Consensus 370 dg~i~iwd~~~~~~-~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 447 (860)
|+.+++|+...... ...+..|...+.++.|.|++..+++++.|+.+.+|+..+........ ..+...+..+.+.+++.
T Consensus 262 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (466)
T COG2319 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGS 341 (466)
T ss_pred CCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCC
Confidence 99999999986664 44446788999999999988888889999889999988877666655 23333577787743435
Q ss_pred EEEEE-ecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEE-EeCCCcEEEEEccCCcceeEEcccCCCeEEE
Q 038577 448 VICAG-TLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLAS-SSWDKTVRLWNVFEGKGSVESFPHTHDVLTV 525 (860)
Q Consensus 448 ~l~~~-~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 525 (860)
.++.+ ..++ .+.+|+............. ..+..+.+++ ...+.. +..++.+.+|+............+...+...
T Consensus 342 ~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (466)
T COG2319 342 LLVSGGSDDG-TIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSL 418 (466)
T ss_pred EEEEeecCCC-cEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEE
Confidence 66666 4554 8888999988733333322 2288999998 544444 6889999999998887544444433789999
Q ss_pred EEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 526 VYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 526 ~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
.+++++..+++++.++.+++|+..+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 419 DFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EECCCCcEEEEecCCCcEEEEeccC
Confidence 9999999999999999999999987
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.89 E-value=2.9e-21 Score=191.67 Aligned_cols=274 Identities=21% Similarity=0.323 Sum_probs=207.5
Q ss_pred CCEEEEEEcCCeEEEEECCCceeE------EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE--ecC
Q 038577 276 LDMVVVGFSNGVFGLYQMPDFVCI------HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK--QQG 347 (860)
Q Consensus 276 ~~~l~~~~~~g~i~~~~~~~~~~~------~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~--~~~ 347 (860)
...|+++.++|.|.++|....... .....|...|..+.|-| |+..++....|.+++.||+++.+.... +.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecc
Confidence 356889999999999998754333 55667889999999999 555555445559999999999988777 789
Q ss_pred cccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe---------------------------eEEEeecCCCceEE---
Q 038577 348 HYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGF---------------------------CFVTFTEHTNAVTA--- 396 (860)
Q Consensus 348 ~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~~~~~v~~--- 396 (860)
|...|.+++|.|.. ..|++|+.||.|.|||++-.. .+.....+...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 99999999999965 478899999999999986321 01111234555555
Q ss_pred EEEeeCCCEEEEEeC-CCcEEEEEccccceeeEee--------CC--CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577 397 LHFMANNHSLLSASL-DGTVRAWDLFRYRNFRTFT--------TP--SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 397 i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
+.+..|...|+++|. |+.|++||+++........ .+ ....+.++..+..|.++.+.+.|+ .|+.||+.
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~-sIy~ynm~ 301 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN-SIYFYNMR 301 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC-cEEEEecc
Confidence 556678889999887 9999999998765332211 11 123577888999999999999998 99999998
Q ss_pred CC--ceEEEecCcccC--eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCC-CEEEEEeC
Q 038577 466 TG--RLLDILSGHEGP--VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDG-RQLACSTL 539 (860)
Q Consensus 466 ~~--~~~~~~~~h~~~--v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~ 539 (860)
+- .++..+.++... -..-..+||+.++++|+.|...++|.+.+.+.. ..+.+|...|++++|.|.. .-++++++
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd 381 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSD 381 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeecc
Confidence 64 344445444321 122346899999999999999999999887644 3445899999999999832 34677799
Q ss_pred CCeEEEEeCCCC
Q 038577 540 DGQIHFWDPLNG 551 (860)
Q Consensus 540 dg~i~iwd~~~~ 551 (860)
|..+++|++..+
T Consensus 382 D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 382 DFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEeccCc
Confidence 999999999654
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6.5e-22 Score=200.78 Aligned_cols=283 Identities=21% Similarity=0.342 Sum_probs=218.2
Q ss_pred ceEEEEecCCCCEEEEEEcCCeEEEEECCCc--e--eEEEEeecC---ceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577 266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDF--V--CIHLLSISR---EKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338 (860)
Q Consensus 266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~--~--~~~~~~~~~---~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~ 338 (860)
....+...++...+++++.. .+.+|.++.. . +........ ..+..+.|......++++++.+|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 45677777887777766544 4555554422 1 111111111 24556778765566666666679999999987
Q ss_pred ---ceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC-CCEEEEEeCCC
Q 038577 339 ---ESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN-NHSLLSASLDG 413 (860)
Q Consensus 339 ---~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-~~~l~s~~~dg 413 (860)
.+.+..+..|...+.++.|++. ..+|++|++||.|++||++..+...++.+....|+++.|+|. +..++++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 5566677889999999999985 458899999999999999999999999999999999999984 57899999999
Q ss_pred cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE--EEecCcccCeEEEEEcCCCCE
Q 038577 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL--DILSGHEGPVHGLVFSPTNAT 491 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~--~~~~~h~~~v~~l~~s~~~~~ 491 (860)
.+++||++...........+.+++.++.++|++.+||+|+.|+ .|+|||+.+.+.. .++. ...+|.++.|-|..++
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK-~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDK-MVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCc-cEEEEeccCCCccceeEEe-ecceeeeeeeccCccc
Confidence 9999999987665555566778999999999999999999999 9999999876543 3333 3578999999998655
Q ss_pred -EEEEeC--CCcEEEEEccCCccee-EEcccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCC
Q 038577 492 -LASSSW--DKTVRLWNVFEGKGSV-ESFPHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 492 -l~s~~~--dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 551 (860)
||+++. |-.|+|||++...... .+..|...++.++|.. |...+.+++.||+|..-..+++
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 776664 7889999998876544 4447999999999976 5567889999998766555444
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=6.8e-21 Score=181.69 Aligned_cols=299 Identities=20% Similarity=0.258 Sum_probs=234.5
Q ss_pred EEEeeccCCCeEEEEEcCCC--CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEE
Q 038577 134 IRTLADCNDKVTALNWSPDS--NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT 211 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~--~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s 211 (860)
.....-+.++|++++|.|.. +.+|+|..-|+|-+||+.+..+ .......+..|.++|.++.|+|.... .+++
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~s 252 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--DKDGVYLFTPHSGPVSGLKFSPANTS----QIYS 252 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--ccCceEEeccCCccccceEecCCChh----heee
Confidence 34556788999999999966 5788899999999999963311 11346778899999999999997765 8999
Q ss_pred EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577 212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY 291 (860)
Q Consensus 212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~ 291 (860)
.+.||+|++-|+++...... .........+..+.|+.+...++++..=|.+.+|
T Consensus 253 sSyDGtiR~~D~~~~i~e~v--------------------------~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i 306 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEV--------------------------LSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI 306 (498)
T ss_pred eccCceeeeeeecchhhHHH--------------------------hhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence 99999999999987543111 0011233457778888888889999988999999
Q ss_pred ECCCcee-EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE----EEEecCcccCeEEEEEcCCCCEEEE
Q 038577 292 QMPDFVC-IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY----ILKQQGHYFDVNCLAYSPDSQLLAT 366 (860)
Q Consensus 292 ~~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~ 366 (860)
|..+... ...+..|...|.+++++|...+++++++.|++.+|||++.-.. ......|...|.+..|||.+..|++
T Consensus 307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T 386 (498)
T KOG4328|consen 307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT 386 (498)
T ss_pred EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe
Confidence 9987655 6677788889999999999999988888889999999975322 3334579999999999999888999
Q ss_pred EeCCCcEEEEECC----CCeeEEEeecCCC------ceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCc
Q 038577 367 GADDNKVKVWTVS----SGFCFVTFTEHTN------AVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ 436 (860)
Q Consensus 367 ~~~dg~i~iwd~~----~~~~~~~~~~~~~------~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 436 (860)
.+.|..|+|||.. .-....++. |+. ......|.|+..++++|-.-..|-++|-..++.+..+..+....
T Consensus 387 T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t 465 (498)
T KOG4328|consen 387 TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST 465 (498)
T ss_pred eccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc
Confidence 9999999999983 223333332 322 23456799999999999999999999998888788877776655
Q ss_pred EEE-EEECCCCCEEEEEecCCCeEEEEECC
Q 038577 437 FVS-LASDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 437 ~~~-~~~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
|.+ ..++|-+..+++|+...|.|+||--+
T Consensus 466 I~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 466 IPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cccceeecccccceeccCCccceEEEEecC
Confidence 555 57899999888888877799988654
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.6e-20 Score=168.52 Aligned_cols=265 Identities=15% Similarity=0.211 Sum_probs=193.9
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----CeeEEEeecCCCceEEEEEee--CCCEEEEEeCCCcEEEEE
Q 038577 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS----GFCFVTFTEHTNAVTALHFMA--NNHSLLSASLDGTVRAWD 419 (860)
Q Consensus 346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd 419 (860)
.+|..-|.++.|.+-|+++|+++.|++|+|||.++ ..+....+.|.+.|..+.|.+ -|+.+++++.|+++.+|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46888899999999999999999999999999653 356677889999999999965 478999999999999998
Q ss_pred cccc--c------eeeEeeCCCCCcEEEEEECCC--CCEEEEEecCCCeEEEEECCCC------ceEEEec-------Cc
Q 038577 420 LFRY--R------NFRTFTTPSSRQFVSLASDQS--GEVICAGTLDSFEIFVWSMKTG------RLLDILS-------GH 476 (860)
Q Consensus 420 ~~~~--~------~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~v~d~~~~------~~~~~~~-------~h 476 (860)
-... + ..++........++.+.|.|. |-.+|+++.|| .++||+.-.- .+.+.++ .+
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG-~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADG-ILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCc-EEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 6211 1 112223345567899999885 67889999998 9999986542 2333333 46
Q ss_pred ccCeEEEEEcCC---CCEEEEEeCC-----CcEEEEEccCCc----ceeEEcccCCCeEEEEEeeC----CCEEEEEeCC
Q 038577 477 EGPVHGLVFSPT---NATLASSSWD-----KTVRLWNVFEGK----GSVESFPHTHDVLTVVYRPD----GRQLACSTLD 540 (860)
Q Consensus 477 ~~~v~~l~~s~~---~~~l~s~~~d-----g~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d 540 (860)
..+-.|+.|+|. ..+||.|+.+ +.++||....+. ...++.+|..+|++++|.|+ -.+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 677889999974 4678888765 479999876543 23445589999999999994 3589999999
Q ss_pred CeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577 541 GQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD 612 (860)
Q Consensus 541 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~ 612 (860)
| |+||.+......-.-+.......-.............|+..|..++|.-.|..|.+.|.||+|++|...-
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9 9999986422110000000000000112223334556777899999999999999999999999997643
No 157
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-19 Score=181.87 Aligned_cols=513 Identities=16% Similarity=0.184 Sum_probs=325.6
Q ss_pred cccccccc--CCcEEEeCCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCC------------CEEEEEcC
Q 038577 7 NLLGAPYR--GGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDG------------TFLLTVDE 72 (860)
Q Consensus 7 ~~~g~~~~--~~~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg------------~~la~~~~ 72 (860)
.+-|++.+ .+++.++++.+||||+++.|.+.|..+-+.+..+.-|...|+.+.|+|-. -+||+++.
T Consensus 8 tlpG~l~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cCCCCCCcccccccccCccceEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 34465553 44677777779999999999999999999988887899999999998731 35788888
Q ss_pred CCcEEEEEcccCeEEEEee-cCCceeEEEECC---CC-CEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEE
Q 038577 73 NQRCHFINLHCHVVLHRVR-FKYPVNAILFSP---NG-KYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTA 146 (860)
Q Consensus 73 d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fsp---dg-~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~ 146 (860)
.|.|.+||...+..+..+. +..++.+++|-| +. .+|++. +.+.+.+|+..+|+. .-..........|
T Consensus 88 ~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-------~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 88 SGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-------FWKYDYSHEILSC 160 (1062)
T ss_pred cCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce-------eeccccCCcceee
Confidence 9999999999998888887 678899999966 44 334443 889999999999984 3444444456677
Q ss_pred EEEcC-CCCeEEEeecCCeEEEEeecccccC-cccccceEeecCCC----------------c---------EEEEEEcc
Q 038577 147 LNWSP-DSNYLLVGSKDLAVRLFYVKEKLKG-IHTNKPFLLLGHRD----------------S---------VVGCFFSV 199 (860)
Q Consensus 147 l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~h~~----------------~---------i~~~~~~~ 199 (860)
+.+.| |.+.+..-+..|.+.+-+.-...+. ....+.+.-..|.+ . ...++|+|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 88888 4566666666677766654432111 11111122222222 0 01245566
Q ss_pred CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEE
Q 038577 200 DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMV 279 (860)
Q Consensus 200 ~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 279 (860)
.-+ .++.......+.++|++-..+ .....+.....++..+--.|..+.|
T Consensus 241 ~~r-----n~lfi~~prellv~dle~~~~--------------------------l~vvpier~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 241 HWR-----NILFITFPRELLVFDLEYECC--------------------------LAVVPIERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred hhh-----ceEEEEeccceEEEcchhhce--------------------------eEEEEeccCCcceeEeccCCCcceE
Confidence 665 455555667788888876433 1111222222333344444455679
Q ss_pred EEEEcCCeEEEEECCC----------------ceeEEEEeec-CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577 280 VVGFSNGVFGLYQMPD----------------FVCIHLLSIS-REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI 342 (860)
Q Consensus 280 ~~~~~~g~i~~~~~~~----------------~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~ 342 (860)
+++..||.+.+|-.+. ++....+..- ...+......|.....++.-..+|.+.+|.+.+++..
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 9999999999997654 1222222111 1122223333432222222222377788877644321
Q ss_pred EE-------------------------------ecCcccCeEEEEEcC-----------CC-------CEEEEEeCCCcE
Q 038577 343 LK-------------------------------QQGHYFDVNCLAYSP-----------DS-------QLLATGADDNKV 373 (860)
Q Consensus 343 ~~-------------------------------~~~~~~~v~~~~~s~-----------~~-------~~l~~~~~dg~i 373 (860)
.. -.+|....++....| .| ..+|.|...|+|
T Consensus 370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV 449 (1062)
T KOG1912|consen 370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTV 449 (1062)
T ss_pred cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceE
Confidence 00 023444455544433 22 367899999999
Q ss_pred EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE---------EEeCCCcEEEEEccccce--eeEeeCCCCCcEEEEEE
Q 038577 374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL---------SASLDGTVRAWDLFRYRN--FRTFTTPSSRQFVSLAS 442 (860)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~---------s~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~ 442 (860)
.++|+.++.....+..|.+.|.++.|....+.+- +++.-+.+.+-|+++|.. ++.++.+...+|..+..
T Consensus 450 ~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irv 529 (1062)
T KOG1912|consen 450 DVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRV 529 (1062)
T ss_pred EEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeee
Confidence 9999999999999999999999999987654332 222234577889988754 45557788889999999
Q ss_pred CCCCCEEEEEecCCCeEEEEECCCCceEEEec--------------Cc------------------------ccCe----
Q 038577 443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--------------GH------------------------EGPV---- 480 (860)
Q Consensus 443 ~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--------------~h------------------------~~~v---- 480 (860)
+..|+++++...+. .+.+||+++..+++... .| ...+
T Consensus 530 S~~~~yLai~Fr~~-plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~ 608 (1062)
T KOG1912|consen 530 SSSGRYLAILFRRE-PLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHIT 608 (1062)
T ss_pred cccCceEEEEeccc-chHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehh
Confidence 99999999999998 89999986543221110 00 0001
Q ss_pred -----------------------EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE--EcccCCCeEEEEEeeCCCEEE
Q 038577 481 -----------------------HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE--SFPHTHDVLTVVYRPDGRQLA 535 (860)
Q Consensus 481 -----------------------~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~ 535 (860)
..++| .+..++.|..+|.+.+||+........ ...+........+-|....++
T Consensus 609 ~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~ra~~l~~~~ipG~~~~l 686 (1062)
T KOG1912|consen 609 LSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRDSPDPRAHSLTFPQIPGDHTTL 686 (1062)
T ss_pred hhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccCCCCchhhheecccCCCCceEE
Confidence 11222 345789999999999999754432111 112333333444455433455
Q ss_pred EEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 536 CSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 536 ~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
+--.|+ +-+||.+....+..+.+..
T Consensus 687 vl~~d~-~~lwdtk~~~lV~siag~d 711 (1062)
T KOG1912|consen 687 VLELDW-LPLWDTKADTLVLSIAGMD 711 (1062)
T ss_pred EEecCc-ceecccccceeeeeeccCC
Confidence 555555 8999998888888875443
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.88 E-value=3e-20 Score=174.73 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=136.2
Q ss_pred CccCeeEEEEcCCCC-EEEEEcCCCcEEEEEcccCe------EEE---Eee-cCCceeEEEECCCCCEEEEE-eCCeEEE
Q 038577 51 SSSNICRIAVSPDGT-FLLTVDENQRCHFINLHCHV------VLH---RVR-FKYPVNAILFSPNGKYIAVG-TGKLVQI 118 (860)
Q Consensus 51 h~~~v~~va~spdg~-~la~~~~d~~i~vwd~~~~~------~~~---~~~-~~~~v~~~~fspdg~~la~~-~~~~i~i 118 (860)
...+|..+.|.+++. .||+|+.|..|++|-+..+. .+. .+. |...|+++.|+|+|.+||+| .++.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 346789999999887 99999999999999876432 222 222 89999999999999999999 6689999
Q ss_pred EeCC--------C-CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC
Q 038577 119 WRSP--------G-FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR 189 (860)
Q Consensus 119 wd~~--------~-~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~ 189 (860)
|... + .+...+.+.....+.+|...|..++|+||+.++++++.|..+++||+..+ .....+.+|.
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G------~l~~~~~dh~ 165 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG------QLLAILDDHE 165 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc------eeEeeccccc
Confidence 9876 2 00112346677889999999999999999999999999999999999999 7788999999
Q ss_pred CcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577 190 DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS 224 (860)
Q Consensus 190 ~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 224 (860)
..+..++|.|-++ ++++-+.|...+.+++.
T Consensus 166 ~yvqgvawDpl~q-----yv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 166 HYVQGVAWDPLNQ-----YVASKSSDRHPEGFSAK 195 (434)
T ss_pred cccceeecchhhh-----hhhhhccCcccceeeee
Confidence 9999999999999 99999988766555544
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.6e-20 Score=180.46 Aligned_cols=294 Identities=14% Similarity=0.157 Sum_probs=226.5
Q ss_pred EEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc--CCCeEEEEEcCCCCeEEE--eecCCeEEEEeecccccCcccccc
Q 038577 107 YIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC--NDKVTALNWSPDSNYLLV--GSKDLAVRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 107 ~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~d~~~l~s--~~~dg~v~vwd~~~~~~~~~~~~~ 182 (860)
+.++.....+++||....+.. ..+..| ...+.++.|+.... |++ .+.|..+++|.-... .+ ..+
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~-------~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~-~~---~Vp 72 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETK-------SEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGK-TP---EVP 72 (673)
T ss_pred eeeeccCCceEEeecccccCc-------cccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCC-CC---ccc
Confidence 455556778999998865421 112222 22388999987664 444 467888999986654 11 112
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ 262 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (860)
..-....+.-.|+....... ++++++..+.|++||+..... ...+..
T Consensus 73 ~~~k~~gd~~~Cv~~~s~S~-----y~~sgG~~~~Vkiwdl~~kl~----------------------------hr~lkd 119 (673)
T KOG4378|consen 73 RVRKLTGDNAFCVACASQSL-----YEISGGQSGCVKIWDLRAKLI----------------------------HRFLKD 119 (673)
T ss_pred eeeccccchHHHHhhhhcce-----eeeccCcCceeeehhhHHHHH----------------------------hhhccC
Confidence 21111112223333333335 999999999999999985322 455678
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC-ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577 263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR-EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY 341 (860)
Q Consensus 263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~ 341 (860)
|.+.|+++.+.-...++|+++..|.|.+..+.++.....+.... ..++.+.+++..+.++...+++|.|.+||+.....
T Consensus 120 h~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp 199 (673)
T KOG4378|consen 120 HQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP 199 (673)
T ss_pred CcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc
Confidence 88999999999999999999999999999999998888888774 46779999999999999999999999999998887
Q ss_pred EEEe-cCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577 342 ILKQ-QGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419 (860)
Q Consensus 342 ~~~~-~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 419 (860)
+..+ ..|..+...++|+|.. .+|++.+.|..|.+||.........+. ...+...++|.++|.+|+.|...|.|..||
T Consensus 200 ~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 200 IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYD 278 (673)
T ss_pred ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEe
Confidence 7766 5699999999999964 577889999999999998776666654 567899999999999999999999999999
Q ss_pred ccccceeeEeeCCCCCcEEEEEECCCC
Q 038577 420 LFRYRNFRTFTTPSSRQFVSLASDQSG 446 (860)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (860)
++..+........+...|++++|-|.-
T Consensus 279 ~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 279 MRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccCCCCceEeeecccceeEEEeeecc
Confidence 998776666666666679999998765
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=3.9e-20 Score=176.57 Aligned_cols=302 Identities=17% Similarity=0.266 Sum_probs=227.6
Q ss_pred EECCCceeEEEEeecCceeEEEEEeeCCC-EEEEEEccCCcEEEEEccC----ceEEEEecCcccCeEEEEEcCC-CCEE
Q 038577 291 YQMPDFVCIHLLSISREKITTAVFNELGN-WLVFGCAKLGQLLVWEWRS----ESYILKQQGHYFDVNCLAYSPD-SQLL 364 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~~~----~~~~~~~~~~~~~v~~~~~s~~-~~~l 364 (860)
+++.+.......+.+..+|++++|+|..+ .+++++...|+|-+||+.+ ...+..+..|..+|.++.|+|. ...+
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 45555566677788889999999999887 7888888889999999952 2345556789999999999995 4578
Q ss_pred EEEeCCCcEEEEECCCCeeEE--EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEE
Q 038577 365 ATGADDNKVKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLAS 442 (860)
Q Consensus 365 ~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 442 (860)
++.+.||+|++-|++.+.... ........+.++.|+.+...++.++.=|.+.+||+++.........-+...|.++++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 899999999999998664332 333345567788888888888888888899999999877644333344458999999
Q ss_pred CCCCCE-EEEEecCCCeEEEEECCCCc----eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc---CCcceeE
Q 038577 443 DQSGEV-ICAGTLDSFEIFVWSMKTGR----LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF---EGKGSVE 514 (860)
Q Consensus 443 ~~~~~~-l~~~~~~~~~i~v~d~~~~~----~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~~~~~~ 514 (860)
+|...+ +++++.|+ +.+|||++.-. ++-....|...|.+..|||.+-.|+|.+.|..|+|||.. ...+...
T Consensus 331 NP~~p~~laT~s~D~-T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQ-TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred CCCCchheeecccCc-ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 998764 56666677 99999998532 223334599999999999998889999999999999984 2222333
Q ss_pred EcccCC------CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEE-E
Q 038577 515 SFPHTH------DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTT-L 587 (860)
Q Consensus 515 ~~~~~~------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l 587 (860)
.+.|+. .....+|.|+..++++|-.-..|-|||-..++.+..+...... .|.+ .
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-------------------tI~~vn 470 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-------------------TIPSVN 470 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-------------------ccccce
Confidence 333332 2345789999999999999999999999999988877655431 2333 4
Q ss_pred EEecCCCEEEEe-cCCCeEEEEECCC
Q 038577 588 CYSADGSYILAG-GSSKYICMYDVAD 612 (860)
Q Consensus 588 ~~s~~g~~l~~~-~~dg~v~vwd~~~ 612 (860)
.|.|-+..+++| +..|.|+||--+.
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eecccccceeccCCccceEEEEecCC
Confidence 789988855555 4678888886543
No 161
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.87 E-value=8.7e-20 Score=171.65 Aligned_cols=335 Identities=17% Similarity=0.209 Sum_probs=228.8
Q ss_pred CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577 188 HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV 267 (860)
Q Consensus 188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 267 (860)
...++.++.|.++... .+++++.|..|++|.++....... .-.+.....+..|...|
T Consensus 12 ~~~pv~s~dfq~n~~~----~laT~G~D~~iriW~v~r~~~~~~-------------------~~~V~y~s~Ls~H~~aV 68 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLN----KLATAGGDKDIRIWKVNRSEPGGG-------------------DMKVEYLSSLSRHTRAV 68 (434)
T ss_pred CCCceEEEEeccCccc----ceecccCccceeeeeeeecCCCCC-------------------ceeEEEeecccCCccee
Confidence 3457888899887754 899999999999999987644110 12334456778899999
Q ss_pred EEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC
Q 038577 268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG 347 (860)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~ 347 (860)
.++.|+|+|+.+++|+.+|.+.+|....-.. . +... ..+ -+-+.......+.+
T Consensus 69 N~vRf~p~gelLASg~D~g~v~lWk~~~~~~-----------~-----~~d~-----e~~------~~ke~w~v~k~lr~ 121 (434)
T KOG1009|consen 69 NVVRFSPDGELLASGGDGGEVFLWKQGDVRI-----------F-----DADT-----EAD------LNKEKWVVKKVLRG 121 (434)
T ss_pred EEEEEcCCcCeeeecCCCceEEEEEecCcCC-----------c-----cccc-----hhh------hCccceEEEEEecc
Confidence 9999999999999999999999998754100 0 0000 000 00011122344577
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577 348 HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427 (860)
Q Consensus 348 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 427 (860)
|...|..++|+|++.++++++.|+.+++||+..|.....+..|...+..++|.|-++++++-+.|...+.+.+...+...
T Consensus 122 h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 122 HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999877777765443332
Q ss_pred EeeCCCCCcEEEEEECCCCCEEEEEecC---CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC----CCc
Q 038577 428 TFTTPSSRQFVSLASDQSGEVICAGTLD---SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW----DKT 500 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----dg~ 500 (860)
.... ..+.+.... +...++|.=++.+ .-...++|+|+|.++++.+. ++.
T Consensus 202 ~~~~---------------~~m~~~~~~~~e~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~~~~g~~ 257 (434)
T KOG1009|consen 202 RHGL---------------DIMPAKAFNEREGKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGLFKVGGG 257 (434)
T ss_pred eeee---------------eEeeecccCCCCcceeeeeecCchh---------hhhhhcccCCCCcEEEcccceeeeCCc
Confidence 2211 000011110 1122333222221 22345788999988887542 222
Q ss_pred -----EEEEEccCCc-ceeEEcccCCCeEEEEEee------------------CCCEEEEEeCCCeEEEEeCCCCceeEE
Q 038577 501 -----VRLWNVFEGK-GSVESFPHTHDVLTVVYRP------------------DGRQLACSTLDGQIHFWDPLNGELMYT 556 (860)
Q Consensus 501 -----i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~------------------~~~~l~~~~~dg~i~iwd~~~~~~~~~ 556 (860)
.++|+-...+ +...+.....++..+.|+| -+-.+|+++ ...|++||.++..++..
T Consensus 258 ~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~ 336 (434)
T KOG1009|consen 258 VFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAV 336 (434)
T ss_pred eeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEE
Confidence 3444433222 2223333445566666665 122455555 45699999999888887
Q ss_pred EecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577 557 IEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616 (860)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~ 616 (860)
...-+- ..|+.++|++||.+|+..+.||...+--++..++-
T Consensus 337 v~nihy-------------------~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 337 VDNIHY-------------------SAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred Eeeeee-------------------eeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 655332 25999999999999999999999888877776654
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=9.6e-21 Score=172.85 Aligned_cols=318 Identities=19% Similarity=0.249 Sum_probs=225.0
Q ss_pred cccCCCCceEEEEecC----CCCEEEEEEcCCeEEEEECCCceeEEEEee-----cCceeEEEEEeeC---CC-EEEEEE
Q 038577 259 DFSQAPSKVTACDYHR----GLDMVVVGFSNGVFGLYQMPDFVCIHLLSI-----SREKITTAVFNEL---GN-WLVFGC 325 (860)
Q Consensus 259 ~~~~~~~~v~~~~~~~----~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-----~~~~i~~~~~s~~---~~-~l~~~~ 325 (860)
....+..+|..++|.+ +...+++......+.+|+.+...-++.++. +......++|+-+ ++ ++++++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 3445667899999874 223344444556788888765443333322 3456777778754 33 455555
Q ss_pred ccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEe---ecCCCceEEEEEee
Q 038577 326 AKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFCFVTF---TEHTNAVTALHFMA 401 (860)
Q Consensus 326 ~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~i~~~~ 401 (860)
..|.|+|.|+.+++....+.+|...|+.+.+.|+. +++++++.|..|++|++++..++..+ .+|.+.|.++.|++
T Consensus 113 -~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 113 -YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred -ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 55999999999999999999999999999999975 68889999999999999999999877 46999999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577 402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH 481 (860)
Q Consensus 402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~ 481 (860)
++.+++++|.|.++++|++...+....+. .+..++|++...-.-.. ...+.+.. +-.-|...|-
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE-------~s~~~~~~~t~~pfpt~---~~~fp~fs------t~diHrnyVD 255 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLE-------LSITYSPNKTTRPFPTP---KTHFPDFS------TTDIHRNYVD 255 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhh-------hhcccCCCCccCcCCcc---cccccccc------ccccccchHH
Confidence 99999999999999999997543322222 11334444332111000 12222222 2234888899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEcc-CCcc-------------eeEEcccCCCeEEEE--EeeCCCEEEEEeCCCeEEE
Q 038577 482 GLVFSPTNATLASSSWDKTVRLWNVF-EGKG-------------SVESFPHTHDVLTVV--YRPDGRQLACSTLDGQIHF 545 (860)
Q Consensus 482 ~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~-------------~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~i 545 (860)
|+.|- |.++++-|-++.|..|..- -.+. ..++.-....++-+. |.|-+++||.|...|.|++
T Consensus 256 Cvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~v 333 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYV 333 (385)
T ss_pred HHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEE
Confidence 99885 6889998989999999871 1111 112222445566555 4566889999999999999
Q ss_pred EeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 546 WDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 546 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
||++..++...-.... +..+..|...+||.||..|+...+|++|.-||.-
T Consensus 334 wdL~~~ep~~~ttl~~----------------s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 334 WDLDNNEPPKCTTLTH----------------SKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EECCCCCCccCceEEe----------------ccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9998876642111111 1224569999999999999999999999999853
No 163
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.87 E-value=1.4e-20 Score=171.50 Aligned_cols=380 Identities=16% Similarity=0.229 Sum_probs=262.0
Q ss_pred EEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe-ecCCeEEEEeecccccC
Q 038577 98 AILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG-SKDLAVRLFYVKEKLKG 176 (860)
Q Consensus 98 ~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~-~~dg~v~vwd~~~~~~~ 176 (860)
-..|||+|+++|+..+..+.|-|..+-+. ..+...-+.|..+.|..|.-+++.+ ..|+.|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~--------~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp--- 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQL--------HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP--- 81 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhH--------HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc---
Confidence 47899999999999888999998887652 2233345678889999998776654 67889999999877
Q ss_pred cccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeee
Q 038577 177 IHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR 256 (860)
Q Consensus 177 ~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (860)
.-...+....+++.+++|+|||+. .|.+...+-.|.+|++.+...
T Consensus 82 ---ew~ckIdeg~agls~~~WSPdgrh----iL~tseF~lriTVWSL~t~~~---------------------------- 126 (447)
T KOG4497|consen 82 ---EWYCKIDEGQAGLSSISWSPDGRH----ILLTSEFDLRITVWSLNTQKG---------------------------- 126 (447)
T ss_pred ---eeEEEeccCCCcceeeeECCCcce----EeeeecceeEEEEEEecccee----------------------------
Confidence 456677778899999999999963 666777799999999988532
Q ss_pred eccccCCCCceEEEEecCCCCEEEEEEcCCe---EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-CCcEE
Q 038577 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGV---FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-LGQLL 332 (860)
Q Consensus 257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~---i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~g~i~ 332 (860)
..++.....+..++|+|+|++.+..+.-.. +.+........+..+....-..+.+.|+|||.++++-..- +-.|.
T Consensus 127 -~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 127 -YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred -EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 222233445788999999999988776522 2222223444556666677788999999999887754321 01111
Q ss_pred EEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCce------------------
Q 038577 333 VWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAV------------------ 394 (860)
Q Consensus 333 v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------------ 394 (860)
.|. ..-.+..++|+|.++++++|+.|+.+|+.+--+.+...++- |-..+
T Consensus 206 aYe------------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~~~~ke~~~~~ql 272 (447)
T KOG4497|consen 206 AYE------------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLHLLEKETFSIVQL 272 (447)
T ss_pred eee------------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhhhhhhhhcchhhh
Confidence 111 12357889999999999999999999998876655544432 22111
Q ss_pred --EEEEEeeCCCEEEEEeCCCcEEEEEcc-------ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC-CCeEEEEEC
Q 038577 395 --TALHFMANNHSLLSASLDGTVRAWDLF-------RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD-SFEIFVWSM 464 (860)
Q Consensus 395 --~~i~~~~~~~~l~s~~~dg~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~v~d~ 464 (860)
.++.|.|.. .=+.-.... =.+|... +.+....+..+ ...+.-++|++|..++++-... ...+.+||+
T Consensus 273 ~~~cLsf~p~~-~~a~~~~~s-e~~YE~~~~pv~~~~lkp~tD~pnP-k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdl 349 (447)
T KOG4497|consen 273 LHHCLSFTPTD-LEAHIWEES-ETIYEQQMTPVKVHKLKPPTDFPNP-KCGAGKLAFSCDSTYAATRNDKYPNALWLWDL 349 (447)
T ss_pred cccccccCCCc-cccCccccc-hhhhhhhhcceeeecccCCCCCCCc-ccccceeeecCCceEEeeecCCCCceEEEEec
Confidence 233333321 000000000 0111111 11111222222 3356678999999999886543 237999999
Q ss_pred CCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577 465 KTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ 542 (860)
Q Consensus 465 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 542 (860)
+..++...+. ...+|....|.|....|+.+.....+++|...... ........-.|..+.|.-+|..++..+.|..
T Consensus 350 q~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~-~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 350 QNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR-VVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce-EEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 9887766665 57789999999999999888888889999976543 4444455578999999999999999988864
No 164
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=4.9e-20 Score=168.27 Aligned_cols=297 Identities=18% Similarity=0.276 Sum_probs=219.9
Q ss_pred EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577 184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA 263 (860)
Q Consensus 184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (860)
....|..+|..++|.+-...++...+++++ ...+.+++...... ++. .....-..+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~--------------------ir~---lq~y~D~d~ 88 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGG--------------------IRL---LQSYADEDH 88 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccc--------------------eee---eeeccCCCC
Confidence 455788999999997533222232455554 45677777665321 000 111111134
Q ss_pred CCceEEEEecCC----CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc
Q 038577 264 PSKVTACDYHRG----LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE 339 (860)
Q Consensus 264 ~~~v~~~~~~~~----~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~ 339 (860)
......++|+-+ ..++|+|+.-|.|++.|+.+++....+.+|...|..+.+.|+...++.+++.|..|++|++++.
T Consensus 89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 455666666544 3578899999999999999999999999999999999999999888888888899999999999
Q ss_pred eEEEEe---cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE----------------------E------Eee
Q 038577 340 SYILKQ---QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF----------------------V------TFT 388 (860)
Q Consensus 340 ~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------~------~~~ 388 (860)
.++..+ .+|...|.++.|+++|.+|++++.|.++++|++...+.. . +-.
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 999887 579999999999999999999999999999998732110 0 112
Q ss_pred cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc-ccee-------------eEeeCCC-CCcEEEEEECCCCCEEEEEe
Q 038577 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR-YRNF-------------RTFTTPS-SRQFVSLASDQSGEVICAGT 453 (860)
Q Consensus 389 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 453 (860)
.|...|-|+.|-. .++++-+.++.|..|..-. .+.+ ..+..+. .......+++|-++.||+|.
T Consensus 249 iHrnyVDCvrw~g--d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 249 IHRNYVDCVRWFG--DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred cccchHHHHHHHh--hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 3777777777764 5899999999999998722 1111 1122111 11245567889999999999
Q ss_pred cCCCeEEEEECCCCceE--EEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577 454 LDSFEIFVWSMKTGRLL--DILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507 (860)
Q Consensus 454 ~~~~~i~v~d~~~~~~~--~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 507 (860)
..+ .+++||++..++. .++. .....|.+.+||.|+..|+....|++|.-||..
T Consensus 327 q~g-~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 327 QSG-KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCC-cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 998 9999999977653 1222 124679999999999999999999999999863
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.9e-19 Score=160.37 Aligned_cols=264 Identities=12% Similarity=0.164 Sum_probs=199.3
Q ss_pred eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC----eEEEEee-cCCceeEEEECC--CCCEEEEE-eCCeEE
Q 038577 46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH----VVLHRVR-FKYPVNAILFSP--NGKYIAVG-TGKLVQ 117 (860)
Q Consensus 46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~----~~~~~~~-~~~~v~~~~fsp--dg~~la~~-~~~~i~ 117 (860)
.+..+|..-|.++.|.+-|+++|+++.|+++.|||.... .+....+ |.+.|..+.|.+ -|+.+|++ .|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 445689999999999999999999999999999997543 3334444 899999999966 58999999 899999
Q ss_pred EEeCC--CCCcccceeEEEEEeeccCCCeEEEEEcCC--CCeEEEeecCCeEEEEeecccccCcccccc-------eEee
Q 038577 118 IWRSP--GFKKEVFAFELIRTLADCNDKVTALNWSPD--SNYLLVGSKDLAVRLFYVKEKLKGIHTNKP-------FLLL 186 (860)
Q Consensus 118 iwd~~--~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~-------~~~~ 186 (860)
||.-. ..+.....+....++....+.|+.+.|.|. |-.||+++.||.+|||+.........-... ....
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99863 222223456677888889999999999994 678999999999999987655211110111 1223
Q ss_pred cCCCcEEEEEEccCCCCCccceEEEEcCC-----ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc
Q 038577 187 GHRDSVVGCFFSVDKKTDKVNRIYTIARD-----CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS 261 (860)
Q Consensus 187 ~h~~~i~~~~~~~~~~~~~~~~l~s~~~d-----g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (860)
.+..+..++.|+|... ...+|+.++.+ +.+++|....+. +.|.. ...+.
T Consensus 167 ~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~----------------------rKw~k--va~L~ 220 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENG----------------------RKWLK--VAELP 220 (361)
T ss_pred cccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCc----------------------ceeee--ehhcC
Confidence 4667778889986432 22267777765 478888876643 24533 45566
Q ss_pred CCCCceEEEEecCCC----CEEEEEEcCCeEEEEECCC--------------------ceeEEEEeecCceeEEEEEeeC
Q 038577 262 QAPSKVTACDYHRGL----DMVVVGFSNGVFGLYQMPD--------------------FVCIHLLSISREKITTAVFNEL 317 (860)
Q Consensus 262 ~~~~~v~~~~~~~~~----~~l~~~~~~g~i~~~~~~~--------------------~~~~~~~~~~~~~i~~~~~s~~ 317 (860)
++..+|+.++|.|+- ..||+++.|| |+||++.. -+.+..+..|.+.+..+.|+-.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 899999999999974 4689999999 99999862 1234456778889999999999
Q ss_pred CCEEEEEEccCCcEEEEEcc
Q 038577 318 GNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 318 ~~~l~~~~~~~g~i~v~d~~ 337 (860)
|..|.+++.+ |.+++|...
T Consensus 300 GtiLsStGdD-G~VRLWkan 318 (361)
T KOG2445|consen 300 GTILSSTGDD-GCVRLWKAN 318 (361)
T ss_pred eeEEeecCCC-ceeeehhhh
Confidence 9988888765 999999643
No 166
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=165.93 Aligned_cols=340 Identities=12% Similarity=0.111 Sum_probs=236.9
Q ss_pred EEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEE-EcCCCcEEEEEcccCeEEEEee-cCC
Q 038577 18 AVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLT-VDENQRCHFINLHCHVVLHRVR-FKY 94 (860)
Q Consensus 18 ~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~-~~~d~~i~vwd~~~~~~~~~~~-~~~ 94 (860)
..|| +|+++|+.++.++.|-|..+-+...++ -.-..|..+.|+.|..++.. +..++.|.+|++...+--.++. ...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~a 92 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQA 92 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCC
Confidence 5699 999999999999999999998876555 34577899999999987765 4678899999999888877777 678
Q ss_pred ceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecc
Q 038577 95 PVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKE 172 (860)
Q Consensus 95 ~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~ 172 (860)
++.+++|||||+.|... -+-.|.||.+.+.+. ..+.-.+..+..++|.|||++.+..+.-...-...+..
T Consensus 93 gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~--------~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 93 GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG--------YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred cceeeeECCCcceEeeeecceeEEEEEEecccee--------EEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 89999999999777666 678899999998763 33333455679999999999998876531111111111
Q ss_pred cccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeE
Q 038577 173 KLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKW 252 (860)
Q Consensus 173 ~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (860)
.... .....+.-.+-..+++.|+|||. .|+ +||.--.
T Consensus 165 c~~W---~ll~~f~~dT~DltgieWsPdg~-----~la---------Vwd~~Le-------------------------- 201 (447)
T KOG4497|consen 165 CKAW---ILLKEFKLDTIDLTGIEWSPDGN-----WLA---------VWDNVLE-------------------------- 201 (447)
T ss_pred hHHH---HHHHhcCCCcccccCceECCCCc-----EEE---------Eecchhh--------------------------
Confidence 0000 11222333344556788888887 444 3432110
Q ss_pred EeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC-------------------------------------
Q 038577 253 GLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD------------------------------------- 295 (860)
Q Consensus 253 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~------------------------------------- 295 (860)
.+......+-.+..++|+|.++++++|+.|+.+++.+--+
T Consensus 202 ---ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 202 ---YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred ---heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 0000111223577888888888888888888887754210
Q ss_pred -----------------------ceeEEEEe------ecCceeEEEEEeeCCCEEEEEEcc-CCcEEEEEccCceEEEEe
Q 038577 296 -----------------------FVCIHLLS------ISREKITTAVFNELGNWLVFGCAK-LGQLLVWEWRSESYILKQ 345 (860)
Q Consensus 296 -----------------------~~~~~~~~------~~~~~i~~~~~s~~~~~l~~~~~~-~g~i~v~d~~~~~~~~~~ 345 (860)
....+.++ .....+..++|++|..++++-.++ .+.+.+||++..+....+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 00111111 112356789999999998876543 367899999887654433
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc
Q 038577 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT 414 (860)
Q Consensus 346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~ 414 (860)
....+|....|.|....++.+.....+++|.......+.. ....-.|..+.|..+|..++..+.|..
T Consensus 359 -iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 359 -IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred -hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence 2345699999999999999888878899999765444443 334578999999999999999988864
No 167
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.85 E-value=4.6e-19 Score=172.26 Aligned_cols=437 Identities=14% Similarity=0.112 Sum_probs=272.8
Q ss_pred CEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEEC
Q 038577 24 TKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFS 102 (860)
Q Consensus 24 ~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fs 102 (860)
.++++.+||++.+.+ +.++.......|.+.|.|-.|+|||.-|+++++||.|++|. .+|-...++. ...+|.|++|.
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 356677788888876 45666666668999999999999999999999999999998 4444333333 67899999999
Q ss_pred CCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccc
Q 038577 103 PNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 103 pdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 182 (860)
|+..-++.+..+.+.|=.+..... +-....|.+-|.++.|++.++.+++|++|-..+|||.... ..
T Consensus 155 p~S~~vl~c~g~h~~IKpL~~n~k-------~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-------~L 220 (737)
T KOG1524|consen 155 PNSNSIVFCQGGHISIKPLAANSK-------IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-------NL 220 (737)
T ss_pred CCCCceEEecCCeEEEeecccccc-------eeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc-------cc
Confidence 999999999888888877765542 5678899999999999999999999999999999998765 56
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ 262 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (860)
..-..|..+|++++|.|+ + .++.++. .+++ ....
T Consensus 221 f~S~~~ey~ITSva~npd-~-----~~~v~S~-nt~R---------------------------------------~~~p 254 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPE-K-----DYLLWSY-NTAR---------------------------------------FSSP 254 (737)
T ss_pred ccCChhccceeeeeeccc-c-----ceeeeee-eeee---------------------------------------ecCC
Confidence 777889999999999999 4 4444442 2222 1123
Q ss_pred CCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE
Q 038577 263 APSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI 342 (860)
Q Consensus 263 ~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~ 342 (860)
..+.|..++|++||..+++|+..|.+.+-..-...... ++.-++.... ..|.+-|+.++..
T Consensus 255 ~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~-----------------~n~~~t~~~r-~~I~vrdV~~~v~- 315 (737)
T KOG1524|consen 255 RVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVS-----------------GNLKATSKSR-KSITVRDVATGVQ- 315 (737)
T ss_pred CccceEEEEEcCCCceeeccccCceEEEeeeehhhhhh-----------------ccceeEeecc-ceEEeehhhhhHH-
Confidence 45689999999999999999999987664332111100 0011111111 4455555555433
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 422 (860)
.. -.....|...+.. -.+|+++.. ..|++|.-........+.+....+.-+.-+.+ .+++ ....++.+|....
T Consensus 316 d~-LE~p~rv~k~sL~--Y~hLvvaTs-~qvyiys~knwntpiiidgre~tr~lieq~ek-~fli--~dgsSi~lytyeg 388 (737)
T KOG1524|consen 316 DI-LEFPQRVVKFSLG--YGHLVVATS-LQVYIYSEKNWNTPIIIDGREDTRNLIEQGEK-YFLI--LDGSSIWLYTYEG 388 (737)
T ss_pred HH-hhCccceeeeeec--eeEEEEEec-cEEEEEecCCccCcEEEeccccchhHhhhhhh-heEE--ecCcEEEEEEecC
Confidence 11 1223345544433 234544443 46888875543333333333332221211111 1111 1222344444321
Q ss_pred cceeeEeeCCCC--CcEEEEEECCCCCEEEEEec-CCCeEEEEEC-CCCceEE--EecCcccCeEEEEEcC----CCCEE
Q 038577 423 YRNFRTFTTPSS--RQFVSLASDQSGEVICAGTL-DSFEIFVWSM-KTGRLLD--ILSGHEGPVHGLVFSP----TNATL 492 (860)
Q Consensus 423 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-~~~~i~v~d~-~~~~~~~--~~~~h~~~v~~l~~s~----~~~~l 492 (860)
+.......|.. .....-.++-....|+.-.. |...+.+||. .+|+... .+-.|...|..++... +.+.+
T Consensus 389 -R~~~np~~Pg~~~dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkV 467 (737)
T KOG1524|consen 389 -RLHLNPRYPGSQIDLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKV 467 (737)
T ss_pred -ceecCCCCCCcccccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceE
Confidence 11111111110 00111122222333443222 2336788887 6666542 2223677777777654 45677
Q ss_pred EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
+.-...+.++|=.++.-....+...-..-|..++|+.. .-+++|-.|+.+.||-..+
T Consensus 468 AFiDknrdl~ItsvKrfgkee~I~KiGTmVhtLawndt-tNiLcglqDt~fsVWy~pn 524 (737)
T KOG1524|consen 468 AFIDKNRDLFITSVKRFGKEEEIYKIGTMVHTLAWNDT-TNILCGLQDTCFSVWYYPN 524 (737)
T ss_pred EEEecCCcEEEEeehhcCchhhhhhhhhhhhhhhhccc-cceeeeeccceEEEEEcCC
Confidence 77777788887776554433444455666888999854 4567788899999998754
No 168
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=1.2e-19 Score=168.86 Aligned_cols=241 Identities=20% Similarity=0.382 Sum_probs=181.6
Q ss_pred cCceeEEEEEeeCC-CEEEEEEccCCcEEEEEccC----------------ceEEEEecCcccCeEEEEEcCC-CCEEEE
Q 038577 305 SREKITTAVFNELG-NWLVFGCAKLGQLLVWEWRS----------------ESYILKQQGHYFDVNCLAYSPD-SQLLAT 366 (860)
Q Consensus 305 ~~~~i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~----------------~~~~~~~~~~~~~v~~~~~s~~-~~~l~~ 366 (860)
+.+.+..+..++-+ ..++++-++.|.|.||++.. .+.+.++.+|...-..++|||- ...+++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 33444455555543 33333444569999999752 3456777889999999999993 225788
Q ss_pred EeCCCcEEEEECCCCeeE---EEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccc-eeeEeeCCCCCcEEEEE
Q 038577 367 GADDNKVKVWTVSSGFCF---VTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYR-NFRTFTTPSSRQFVSLA 441 (860)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~~~~ 441 (860)
|.--+.|++|...++.-. ..+.+|+..|-.++|+|.. ..|++|+.||+|+|||++.+. ....+...+...|..+.
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVIS 309 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVIS 309 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEE
Confidence 888889999998876432 3567799999999999965 688999999999999999873 33334456667899999
Q ss_pred ECCCCCEEEEEecCCCeEEEEECCC---CceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcc------
Q 038577 442 SDQSGEVICAGTLDSFEIFVWSMKT---GRLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKG------ 511 (860)
Q Consensus 442 ~~~~~~~l~~~~~~~~~i~v~d~~~---~~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~------ 511 (860)
|+..-.+||+|+.+| ++.|||++. ++++..++-|..+|+++.|+|. ...+++++.|.+|.+||+.-...
T Consensus 310 Wnr~~~lLasG~DdG-t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~ 388 (440)
T KOG0302|consen 310 WNRREPLLASGGDDG-TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ 388 (440)
T ss_pred ccCCcceeeecCCCc-eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc
Confidence 999999888888888 999999984 6788999999999999999995 46788889999999999853221
Q ss_pred ----------eeEEccc--CCCeEEEEEeeC-CCEEEEEeCCCeEEEEe
Q 038577 512 ----------SVESFPH--THDVLTVVYRPD-GRQLACSTLDGQIHFWD 547 (860)
Q Consensus 512 ----------~~~~~~~--~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd 547 (860)
...++.| ...+..+.|+++ ..++++.+.|| +.||.
T Consensus 389 ~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 389 EAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 1112223 456788899985 34778888888 55654
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=4e-19 Score=161.88 Aligned_cols=272 Identities=17% Similarity=0.288 Sum_probs=205.6
Q ss_pred eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE------------EEec-CcccCeEEEEEc-------CCCCEEEEE
Q 038577 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI------------LKQQ-GHYFDVNCLAYS-------PDSQLLATG 367 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~------------~~~~-~~~~~v~~~~~s-------~~~~~l~~~ 367 (860)
-...+.|+|||..+++.+.+ ..+.+|++...-.- ..++ .....|...+|- |+..++++.
T Consensus 51 f~kgckWSPDGSciL~~sed-n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSED-NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeeccc-CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 45678999999999988776 89999987532110 0111 112345566664 577899999
Q ss_pred eCCCcEEEEECCCCeeEEEeec--CCC---ceEEEEEeeCCCEEEEEeCCCcEEEEEc-cccceeeEee------CCCCC
Q 038577 368 ADDNKVKVWTVSSGFCFVTFTE--HTN---AVTALHFMANNHSLLSASLDGTVRAWDL-FRYRNFRTFT------TPSSR 435 (860)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~i~~~~~~~~l~s~~~dg~i~~wd~-~~~~~~~~~~------~~~~~ 435 (860)
+.+.-|++||.-+|+....+.. |.. ...+++|+|||.+|++| ....|++||+ +.++...... .....
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999988877654 333 45689999999988866 5679999999 4444332222 12234
Q ss_pred cEEEEEECCCCC-EEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCc-ce
Q 038577 436 QFVSLASDQSGE-VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGK-GS 512 (860)
Q Consensus 436 ~~~~~~~~~~~~-~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~-~~ 512 (860)
-+.+++++|-.. .+++++... .+-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|.. |-.|..||++... .+
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q-~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQ-RVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeeeeeccCCCCcceeeecccc-eeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 578899999765 788888777 8999999999999999999999999999999999999875 6789999998654 33
Q ss_pred eEEcccCC---CeEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CceeEEEecccccCCCccccccccccccCCCCcEEEEE
Q 038577 513 VESFPHTH---DVLTVVYRPDGRQLACSTLDGQIHFWDPLN-GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLC 588 (860)
Q Consensus 513 ~~~~~~~~---~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 588 (860)
..+..|.. .-.-....|++++|++|+.||.|++||+++ |..+..+..+.+ .++.++
T Consensus 288 ~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--------------------~vNgvs 347 (406)
T KOG2919|consen 288 YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--------------------TVNGVS 347 (406)
T ss_pred hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--------------------ccccee
Confidence 44444444 223345568999999999999999999998 676777766665 589999
Q ss_pred EecCCCEEEEecCC
Q 038577 589 YSADGSYILAGGSS 602 (860)
Q Consensus 589 ~s~~g~~l~~~~~d 602 (860)
+.|--..+++++..
T Consensus 348 lnP~mpilatssGq 361 (406)
T KOG2919|consen 348 LNPIMPILATSSGQ 361 (406)
T ss_pred cCcccceeeeccCc
Confidence 99997778877643
No 170
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.6e-19 Score=171.90 Aligned_cols=295 Identities=13% Similarity=0.204 Sum_probs=208.8
Q ss_pred eeEEEECCCCCEEEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC-------CCCeEEEeecCCe
Q 038577 96 VNAILFSPNGKYIAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP-------DSNYLLVGSKDLA 164 (860)
Q Consensus 96 v~~~~fspdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------d~~~l~s~~~dg~ 164 (860)
...+..-|...+|+++ ....+.+|=.+.....+. +.+.+- -...-.|++|.. -|+++|.|+.|..
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlY---vHHD~i-lpafPLC~ewld~~~~~~~~gNyvAiGtmdp~ 203 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLY---VHHDFI-LPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPE 203 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcCCCccee---Eeccee-ccCcchhhhhhhcCCCCCCCcceEEEeccCce
Confidence 3456667877777777 223444443333321110 111110 012234566633 2589999999999
Q ss_pred EEEEeecccccCccc---------------ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCC
Q 038577 165 VRLFYVKEKLKGIHT---------------NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGK 229 (860)
Q Consensus 165 v~vwd~~~~~~~~~~---------------~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 229 (860)
|.|||++-.....+. .......+|++.|.++.|...-++ .|++++.|.+|++||++++.+
T Consensus 204 IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n----VLaSgsaD~TV~lWD~~~g~p- 278 (463)
T KOG0270|consen 204 IEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN----VLASGSADKTVKLWDVDTGKP- 278 (463)
T ss_pred eEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce----eEEecCCCceEEEEEcCCCCc-
Confidence 999998755211000 011223468888888888776654 999999999999999999865
Q ss_pred CccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCCceeEEEEeecCce
Q 038577 230 IDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPDFVCIHLLSISREK 308 (860)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 308 (860)
...+..|...|.++.|+|.. ..|++|+.|+++.+.|.+........-...+.
T Consensus 279 ---------------------------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~ 331 (463)
T KOG0270|consen 279 ---------------------------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE 331 (463)
T ss_pred ---------------------------ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc
Confidence 34455788999999999964 67889999999999999864444333334568
Q ss_pred eEEEEEeeCCCEEEEEEccCCcEEEEEccCc-eEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee--E
Q 038577 309 ITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-SYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSGFC--F 384 (860)
Q Consensus 309 i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~--~ 384 (860)
|..++|.|.....++++.++|.++-+|++.. +++.++..|.++|.++++++.- .++++++.|+.|++|++..... +
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccc
Confidence 9999999999999988899999999999875 8899999999999999998854 4788999999999999864332 2
Q ss_pred EEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEEEcccccee
Q 038577 385 VTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAWDLFRYRNF 426 (860)
Q Consensus 385 ~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~ 426 (860)
....-.-+...|.++.|+-. .++.||..+.+++||+.+...+
T Consensus 412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 22111223466777777653 5677778888999999776544
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=4.8e-19 Score=161.39 Aligned_cols=285 Identities=19% Similarity=0.249 Sum_probs=215.3
Q ss_pred cEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEE
Q 038577 191 SVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC 270 (860)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 270 (860)
...++.|+|||. .|++.+.|..+.+|++.......... ........ ...-...+..|...
T Consensus 51 f~kgckWSPDGS-----ciL~~sedn~l~~~nlP~dlys~~~~--------~~~~~~~~-------~~~r~~eg~tvydy 110 (406)
T KOG2919|consen 51 FLKGCKWSPDGS-----CILSLSEDNCLNCWNLPFDLYSKKAD--------GPLNFSKH-------LSYRYQEGETVYDY 110 (406)
T ss_pred hhccceeCCCCc-----eEEeecccCeeeEEecChhhcccCCC--------Cccccccc-------eeEEeccCCEEEEE
Confidence 345689999999 99999999999999987543211100 00000000 01111233456666
Q ss_pred Eec-------CCCCEEEEEEcCCeEEEEECCCceeEEEEeecC--c---eeEEEEEeeCCCEEEEEEccCCcEEEEEc-c
Q 038577 271 DYH-------RGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR--E---KITTAVFNELGNWLVFGCAKLGQLLVWEW-R 337 (860)
Q Consensus 271 ~~~-------~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~--~---~i~~~~~s~~~~~l~~~~~~~g~i~v~d~-~ 337 (860)
+|- |+..++++.+.+.-|.+||.-+++....++.-. + ...+++|+|||..|+++.. ..|+++|+ +
T Consensus 111 ~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk--rcirvFdt~R 188 (406)
T KOG2919|consen 111 CWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK--RCIRVFDTSR 188 (406)
T ss_pred EeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc--ceEEEeeccC
Confidence 664 678899999999999999999998877665422 2 4578999999999998754 79999998 4
Q ss_pred CceEEEE-------ecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577 338 SESYILK-------QQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409 (860)
Q Consensus 338 ~~~~~~~-------~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 409 (860)
.|..... ..+..+-+.|++|+|-.. .+++|+....+-||.-..+.++..+.+|.+.|+.+.|.++|+.|.+|
T Consensus 189 pGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 189 PGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred CCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc
Confidence 4432211 123467789999999654 89999999999999988999999999999999999999999999998
Q ss_pred eC-CCcEEEEEcccccee-eEeeCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCC-CceEEEecCcccCeEEEE
Q 038577 410 SL-DGTVRAWDLFRYRNF-RTFTTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHGLV 484 (860)
Q Consensus 410 ~~-dg~i~~wd~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~ 484 (860)
.. |..|-.||++..+.. ..+..+. ..+-.-+...|++++|+.|+.+| .|.+||+++ |..+..+..|...++.++
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG-~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG-SVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc-cEEEEecCCCCCccccccccccccccee
Confidence 75 678999999875432 2222211 22334566789999999999999 999999998 777888888999999999
Q ss_pred EcCCCCEEEEEeCC
Q 038577 485 FSPTNATLASSSWD 498 (860)
Q Consensus 485 ~s~~~~~l~s~~~d 498 (860)
++|--.++|+++..
T Consensus 348 lnP~mpilatssGq 361 (406)
T KOG2919|consen 348 LNPIMPILATSSGQ 361 (406)
T ss_pred cCcccceeeeccCc
Confidence 99998888888744
No 172
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=1.8e-19 Score=159.43 Aligned_cols=288 Identities=18% Similarity=0.210 Sum_probs=204.8
Q ss_pred ccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
...+.+++|.+.++++.|..++ +|+++..-|.+++|++.+... ...
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~------rL~sg~~~G~V~~w~lqt~r~----------------------------~~~ 50 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE------RLMSGLSVGIVKMWVLQTERD----------------------------LPL 50 (323)
T ss_pred CCeeEeccccchheehhhccch------hhhcccccceEEEEEeecCcc----------------------------chh
Confidence 4567888999999999998877 799999999999999998543 122
Q ss_pred cc-CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEee-----CCC---EEEEEEcc-CC
Q 038577 260 FS-QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE-----LGN---WLVFGCAK-LG 329 (860)
Q Consensus 260 ~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~-----~~~---~l~~~~~~-~g 329 (860)
+. .+...|+.+...|+ +.+.+-+.|+.+.+|++.....+..-.. .+.++.|.+ .++ .++..-.. ..
T Consensus 51 ~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si---~~nslgFCrfSl~~~~k~~eqll~yp~rgsd 126 (323)
T KOG0322|consen 51 IRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSI---VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSD 126 (323)
T ss_pred hhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeee---eccccccccceeccCCCcchhheecCCcccc
Confidence 22 34556888888887 5688889999999999976554433222 223333322 211 11211111 11
Q ss_pred cEEEEEccCceEEEEe----cCcccCeEEEEEcC-CCC--EEEEEeCCCcEEEEECCCCee----------EEEeecCCC
Q 038577 330 QLLVWEWRSESYILKQ----QGHYFDVNCLAYSP-DSQ--LLATGADDNKVKVWTVSSGFC----------FVTFTEHTN 392 (860)
Q Consensus 330 ~i~v~d~~~~~~~~~~----~~~~~~v~~~~~s~-~~~--~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~ 392 (860)
.+.+-|......+... .+..+.+.|..+.. ++. ++++|.++|.+.+||+.++.. ......|..
T Consensus 127 e~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~q 206 (323)
T KOG0322|consen 127 ETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQ 206 (323)
T ss_pred hhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccC
Confidence 1222222222222221 22345566666433 233 567888999999999998733 334456999
Q ss_pred ceEEEEEeeCCCEEEEEeCCCcEEEEEccccc---eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce
Q 038577 393 AVTALHFMANNHSLLSASLDGTVRAWDLFRYR---NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL 469 (860)
Q Consensus 393 ~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~ 469 (860)
+|.++.+.+.-..=++++.+..+..|++.... .++....-....+..+.+-||++.+|+++.|+ .|++|+.++..+
T Consensus 207 pvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~-RiRVyswrtl~p 285 (323)
T KOG0322|consen 207 PVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDH-RIRVYSWRTLNP 285 (323)
T ss_pred cceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCC-cEEEEEeccCCc
Confidence 99999998876677888888899999986541 11111122233578889999999999999999 999999999999
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038577 470 LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNV 506 (860)
Q Consensus 470 ~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~ 506 (860)
+..++-|.+.|.+++|+|+...+|.++.|++|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999999986
No 173
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=2.4e-18 Score=170.87 Aligned_cols=474 Identities=16% Similarity=0.174 Sum_probs=268.2
Q ss_pred eCCCEEEEEEccCCcEEEEEccCceEEEEecC---cccCeEEEEE------cC--------------CCCEEEEEeCCCc
Q 038577 316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQQG---HYFDVNCLAY------SP--------------DSQLLATGADDNK 372 (860)
Q Consensus 316 ~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~---~~~~v~~~~~------s~--------------~~~~l~~~~~dg~ 372 (860)
|...+++...++ |.+++|+...++....+.. -.+..++..| +| +...++-|...|.
T Consensus 3 ~~~~~~A~~~~~-g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 3 PALDYFALSTGD-GRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred chhheEeecCCC-CeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 344566666655 9999999999988777632 1233444444 22 3457888889999
Q ss_pred EEEEECCCCeeEEEee--cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEE
Q 038577 373 VKVWTVSSGFCFVTFT--EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVIC 450 (860)
Q Consensus 373 i~iwd~~~~~~~~~~~--~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 450 (860)
|.+|+...++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.++.+..... .+.+++++|||..++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-LVSSLCISPDGKILL 160 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC-ccceEEEcCCCCEEE
Confidence 9999999999888776 5889999999998888999999999999999999888887776543 678999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC-----CCEEE-EEeCCCcEEEEEccCCcce----eEEcccCC
Q 038577 451 AGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT-----NATLA-SSSWDKTVRLWNVFEGKGS----VESFPHTH 520 (860)
Q Consensus 451 ~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~-----~~~l~-s~~~dg~i~iwd~~~~~~~----~~~~~~~~ 520 (860)
+++. +|.+||+++++.+..|.||.++|.+++|.-+ |.++. +...+.-+.+|-+...... ..+.....
T Consensus 161 ~as~---~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~di 237 (541)
T KOG4547|consen 161 TASR---QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDI 237 (541)
T ss_pred eccc---eEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCC
Confidence 8876 8999999999999999999999999999876 56654 4455666888876542211 11111222
Q ss_pred CeEE-EEEeeCCC---EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEE
Q 038577 521 DVLT-VVYRPDGR---QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI 596 (860)
Q Consensus 521 ~v~~-~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 596 (860)
+++. -....|+. .+++...+|.+..+..+--..... .... .-..++++.+| ++
T Consensus 238 pv~~ds~~~ed~~~~l~lAst~~~g~v~~~~~nl~~l~~~-~~~k---------------------v~~~~~~~s~g-~~ 294 (541)
T KOG4547|consen 238 PVTSDSGLLEDGTIPLVLASTLIPGIVHLKLSNLIILLHK-KIVK---------------------VNGYNADSSKG-FL 294 (541)
T ss_pred CeEeccccccccccceEEeeeccCceeeeccccHHHHhcC-cccc---------------------ccceeeecccc-hh
Confidence 2222 22222333 345555556555543221111110 0000 01223333333 22
Q ss_pred EEecCCCeEEEEECCCceEEEEEeecccccccceeeeccCCCCCCCCCCccccCCCCCccccccccccCccccCCCCCCC
Q 038577 597 LAGGSSKYICMYDVADQVLLRRFQITHNLSLDGVIDFLNSKNMTEAGPMDLIDDDNSDTEEGVEKQTRGKLDYDLPGALP 676 (860)
Q Consensus 597 ~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 676 (860)
++.-.+.. ..-.+.-|...+.+-..-..... ..-.+..+.+...+.... ....+...+... +.
T Consensus 295 a~~~~~~~-~~~~l~~g~~~~ps~~~vsln~~-~~l~l~~R~l~~~~~~~~--------~~~k~~~rqv~~-----n~-- 357 (541)
T KOG4547|consen 295 AALFGIDK-AHALLAYGSLVNPSFVRVSLNLG-QKLHLMDRDLSGSGKLKL--------VTSKEGKRQVVL-----NS-- 357 (541)
T ss_pred hhhcccch-hhhhhhcccccCchhhhhhhhhc-chhhhhhhhccCCcccce--------eeeecccceeec-----ch--
Confidence 21111100 00000001111000000000000 000000000000000000 000000000000 00
Q ss_pred CCCCCccceeEEEECCCCCeEEEecccc-EEEEecCCccccCCcccCccCCHHHHHhhcCcCCcHHHHHHHHhcCChHHH
Q 038577 677 NRGRPTIQTKCLKIAPTGRNFVAATTEG-VLVYSIDESFIFDPTDLDIDVTPEAVDAALNEDQPKRALILSLRLNEDNLI 755 (860)
Q Consensus 677 ~~~~~~~~~~~~~~spdg~~~~~~~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 755 (860)
..++.++..--+..|+-..+.+-...| +.++..+. .. .+..+.+..+.............+.+++..++..++
T Consensus 358 -~~k~~~~~~~q~~~p~~~~l~v~~~~g~iEv~~ear---l~--~l~i~~~~~~~k~~~~tll~s~~l~Q~L~srd~~~~ 431 (541)
T KOG4547|consen 358 -VAKLGEAEVIQEEPPLTEDLPVLTKGGDIEVSTEAR---LS--ALDINLTSNADKSDESTLLASVSLNQALSSRDSHIL 431 (541)
T ss_pred -hhhhcchhhhcccCcchhcchhhhcCCcceeeehhh---hh--hcccccccccchhhhhccchhhhhhhhhcccccccc
Confidence 000000000000011111111111111 11211110 00 001111111111122234566788999999999999
Q ss_pred HHHhHhcCCCccchhcccCCHHHHHHHHHHHHhhhccCC-ChhhHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHH
Q 038577 756 KKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLESCP-HLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKSLQKSITR 834 (860)
Q Consensus 756 ~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~-~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~ 834 (860)
.++|...++..|+.++.++|++.+.+|++.+..++++++ +....+.|+++.|..|+.++++.++ .+..+..+.+...+
T Consensus 432 ~~Vl~s~d~~lik~tv~rme~st~~pll~ela~rlq~~~~~~~~~l~w~k~~l~~h~~yl~sv~~-~~~~l~~~~~~~~~ 510 (541)
T KOG4547|consen 432 TDVLISRDEELIKSTVLRMEESTAPPLLEELAPRLQSRASRGRILLVWLKTRLTSHNSYLSSVPD-QLETLSGKMQKDLR 510 (541)
T ss_pred hhhhccCChHHHHHHHhhcChhhccchhccchhhhccccccCchhhhhhhhhhhcccceeecCcc-hhhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999854 8999999999999999999999874 44444444444444
Q ss_pred HHHHHHH
Q 038577 835 IHQDLAD 841 (860)
Q Consensus 835 ~~~~l~~ 841 (860)
+.+.+..
T Consensus 511 ~ae~~~~ 517 (541)
T KOG4547|consen 511 TAEQLGH 517 (541)
T ss_pred HHHHHHH
Confidence 4444433
No 174
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=2.5e-19 Score=170.65 Aligned_cols=235 Identities=22% Similarity=0.327 Sum_probs=180.2
Q ss_pred CCCEEEEEEccCCcEEEEEccCceEE---------------------EEecCcccCeEEEEEcCC-CCEEEEEeCCCcEE
Q 038577 317 LGNWLVFGCAKLGQLLVWEWRSESYI---------------------LKQQGHYFDVNCLAYSPD-SQLLATGADDNKVK 374 (860)
Q Consensus 317 ~~~~l~~~~~~~g~i~v~d~~~~~~~---------------------~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~ 374 (860)
.|+++++++.+ ..|.|||+.-...+ ....+|...|..++|+.+ .+.||+|+.|.+|+
T Consensus 191 ~gNyvAiGtmd-p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~ 269 (463)
T KOG0270|consen 191 AGNYVAIGTMD-PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVK 269 (463)
T ss_pred CcceEEEeccC-ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEE
Confidence 36788888877 89999998522110 001368888888888775 45889999999999
Q ss_pred EEECCCCeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577 375 VWTVSSGFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAG 452 (860)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (860)
+||+.++++..++..|.+.|.++.|+|.. .+|++|+.|+++.+.|.+.... -..+. ....+-.++|.|.....+..
T Consensus 270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 270 LWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred EEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCceeEEE
Confidence 99999999999999999999999999864 7899999999999999985221 11222 23467889999988766666
Q ss_pred ecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeE--EcccCCCeEEEEEe
Q 038577 453 TLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVE--SFPHTHDVLTVVYR 528 (860)
Q Consensus 453 ~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s 528 (860)
+.+.|.++-+|++.. +++.+++.|.++|.++++++.- .++++++.|+.|++|++........ .....+...|.++.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence 655559999999974 9999999999999999999854 5688999999999999876543111 11122335666777
Q ss_pred eCCC-EEEEEeCCCeEEEEeCCCCcee
Q 038577 529 PDGR-QLACSTLDGQIHFWDPLNGELM 554 (860)
Q Consensus 529 ~~~~-~l~~~~~dg~i~iwd~~~~~~~ 554 (860)
|+-. +++.|+..+.++|||+.+...+
T Consensus 428 ~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 428 PDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCcceEEEecCccceEEEeecccChhH
Confidence 7544 6778888888999999877654
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.9e-20 Score=197.16 Aligned_cols=284 Identities=20% Similarity=0.309 Sum_probs=219.7
Q ss_pred EEEEecCCCC-EEEEEE----------cCCeEEEEECCC--ce----eEEEEeecCceeEEEEEeeCCCE---EEEEEcc
Q 038577 268 TACDYHRGLD-MVVVGF----------SNGVFGLYQMPD--FV----CIHLLSISREKITTAVFNELGNW---LVFGCAK 327 (860)
Q Consensus 268 ~~~~~~~~~~-~l~~~~----------~~g~i~~~~~~~--~~----~~~~~~~~~~~i~~~~~s~~~~~---l~~~~~~ 327 (860)
-.++|+|++. ++++|+ .+.++.+|.+.. .+ ....+. ...+...++|.+.|.. +++++.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 4567888875 444443 244556665432 22 111121 2347889999998877 6777788
Q ss_pred CCcEEEEEccCc------eEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEee--cCCCceEEEE
Q 038577 328 LGQLLVWEWRSE------SYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFT--EHTNAVTALH 398 (860)
Q Consensus 328 ~g~i~v~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~i~ 398 (860)
||.|.+||...- ..+.+...|.+.|..+.|++.+. .||+|+.||.|.|||+...+.-.... ...+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 899999998652 23445578999999999999765 99999999999999998754433331 2456899999
Q ss_pred EeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCC-CcEEEEEECCCCC-EEEEEecCC--CeEEEEECCC-CceEEE
Q 038577 399 FMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSS-RQFVSLASDQSGE-VICAGTLDS--FEIFVWSMKT-GRLLDI 472 (860)
Q Consensus 399 ~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~~~--~~i~v~d~~~-~~~~~~ 472 (860)
|+..- +.|++++.+|.+.|||++..+.+..+..... ..+..++|+|+.. .+++++.|. -.|.+||++. ..+++.
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 98754 5788999999999999999887777665544 4578899999874 455555443 3799999885 457788
Q ss_pred ecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCC-EEEEEeCCCeEEEEeCCC
Q 038577 473 LSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGR-QLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 473 ~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 550 (860)
+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+......+..+.|.|... .+++++-||.|.||.+.+
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 89999999999999966 8899999999999999999998888888889999999999655 888899999999999876
Q ss_pred Cc
Q 038577 551 GE 552 (860)
Q Consensus 551 ~~ 552 (860)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 54
No 176
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.83 E-value=7.2e-17 Score=164.48 Aligned_cols=322 Identities=16% Similarity=0.133 Sum_probs=220.4
Q ss_pred CEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577 277 DMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL 355 (860)
Q Consensus 277 ~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~ 355 (860)
++++ +-..+|.+.+.|..+.+.+..+......-..+.|+|||+++++++. +|.|.++|+.+++.+.++.... ...++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G~-~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVGG-NPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-SS-EEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecCC-CcceE
Confidence 3444 4556799999999999999999887666566889999999999876 4999999999999988886544 36789
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEeecC-------CCceEEEEEeeCCCEEEEEeC-CCcEEEEEcccccee
Q 038577 356 AYSPDSQLLATGA-DDNKVKVWTVSSGFCFVTFTEH-------TNAVTALHFMANNHSLLSASL-DGTVRAWDLFRYRNF 426 (860)
Q Consensus 356 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~ 426 (860)
++++||++++++. .++.+.++|.++.+.+..+... ...+.++..+|....++..-. .+.|.+.|....+..
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999999998775 5899999999999998877543 346778888888886665554 478888887776554
Q ss_pred eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec----CcccCeEEEEEcCC----------CCEE
Q 038577 427 RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS----GHEGPVHGLVFSPT----------NATL 492 (860)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~h~~~v~~l~~s~~----------~~~l 492 (860)
..-............++|++++++++......+-++|.++++.+..+. .|..++..+ .+|. +...
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence 433333444677899999999988876655599999999998877653 244444443 2222 2222
Q ss_pred EEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEE----eCCCeEEEEeCCCCceeEEEecccccCCCcc
Q 038577 493 ASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACS----TLDGQIHFWDPLNGELMYTIEGRRDISGGRL 568 (860)
Q Consensus 493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 568 (860)
++.-....+.+||..+.+.+..+.....+ ..+..+|+++++.+. ...+.|.++|..+.+....+.....
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~------ 315 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG------ 315 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------
T ss_pred cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC------
Confidence 22222345667888888877777666566 888889999999998 4457899999999988877764432
Q ss_pred ccccccccccCCCCcEEEEEEecCCCEEEEecC--CCeEEEEECCCceEEEEEee
Q 038577 569 MTDRRSAANSSSGKCFTTLCYSADGSYILAGGS--SKYICMYDVADQVLLRRFQI 621 (860)
Q Consensus 569 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~--dg~v~vwd~~~~~~~~~~~~ 621 (860)
..+..+.|++||+++..+.. ++.|.+||..+.+++++++.
T Consensus 316 -------------~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 316 -------------KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp ---------------EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE-
T ss_pred -------------CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEe
Confidence 24899999999997765543 44799999999999998873
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=6e-20 Score=195.75 Aligned_cols=290 Identities=12% Similarity=0.168 Sum_probs=221.6
Q ss_pred eEEEEcCCCC-EEEEE----------cCCCcEEEEEcc--cC----eEEEEeecCCceeEEEECCCCCE----EEEE-eC
Q 038577 56 CRIAVSPDGT-FLLTV----------DENQRCHFINLH--CH----VVLHRVRFKYPVNAILFSPNGKY----IAVG-TG 113 (860)
Q Consensus 56 ~~va~spdg~-~la~~----------~~d~~i~vwd~~--~~----~~~~~~~~~~~v~~~~fspdg~~----la~~-~~ 113 (860)
..+||||++. ++|+| +.+.++.||.+. +. +.+..+....+-+.++|++.|.. ||.| .|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccC
Confidence 4678999987 66654 335566777554 22 34445556777899999997765 7777 89
Q ss_pred CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCC-eEEEeecCCeEEEEeecccccCcccccceEe--ecCCC
Q 038577 114 KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSN-YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL--LGHRD 190 (860)
Q Consensus 114 ~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~--~~h~~ 190 (860)
|.|.+||...-. ......++.+...|.+.|..+.|++... .||+|+.||.|.|||+... ..+... ....+
T Consensus 90 G~I~ly~p~~~~-~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~------~tP~~~~~~~~~~ 162 (1049)
T KOG0307|consen 90 GNIVLYDPASII-ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKP------ETPFTPGSQAPPS 162 (1049)
T ss_pred CceEEecchhhc-cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCc------CCCCCCCCCCCcc
Confidence 999999987631 1112335778889999999999999775 9999999999999999886 233333 23567
Q ss_pred cEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEE
Q 038577 191 SVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC 270 (860)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 270 (860)
.|.+++|...-.. .|++++.+|.+.+||++.....+... .......+..+
T Consensus 163 eI~~lsWNrkvqh----ILAS~s~sg~~~iWDlr~~~pii~ls--------------------------~~~~~~~~S~l 212 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSH----ILASGSPSGRAVIWDLRKKKPIIKLS--------------------------DTPGRMHCSVL 212 (1049)
T ss_pred cceEeccchhhhH----HhhccCCCCCceeccccCCCcccccc--------------------------cCCCccceeee
Confidence 8999999876553 78899999999999999864311110 01111357889
Q ss_pred EecCCCC-EEEEEEcC---CeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577 271 DYHRGLD-MVVVGFSN---GVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345 (860)
Q Consensus 271 ~~~~~~~-~l~~~~~~---g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~ 345 (860)
+|+|+.. .+++++.| -.|.+||++.. ...+.++.|...|.++.|++.+..++.++..|+.+.+|+.++++.+..+
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~ 292 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGEL 292 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeec
Confidence 9999874 46666655 47999998743 4567788999999999999999777778888899999999999999999
Q ss_pred cCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe
Q 038577 346 QGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGF 382 (860)
Q Consensus 346 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 382 (860)
......+..+.|+|... .++.++-||.|.||.+....
T Consensus 293 p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 293 PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 88888899999999776 78888999999999987543
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=5.1e-17 Score=151.51 Aligned_cols=238 Identities=15% Similarity=0.270 Sum_probs=184.3
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCC--CcEEEEEccccceee
Q 038577 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLD--GTVRAWDLFRYRNFR 427 (860)
Q Consensus 350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~ 427 (860)
..+..+.|+.+...|..|+.|| .++|+.+..............|..+-|+.. .++..+.+ +.++++++.+...+.
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 3466777999999999999886 578877654442222223345566666654 55555544 359999998888888
Q ss_pred EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC---cccCeEEEEEcCCCCEEEEEe--CCCcEE
Q 038577 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNATLASSS--WDKTVR 502 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~--~dg~i~ 502 (860)
.+..+. .+.++.+..+ .|++.-.+ .|+|||+++.++++++.. +...+.++++++.+.++|.-+ ..|.|.
T Consensus 83 e~~fpt--~IL~VrmNr~--RLvV~Lee--~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 83 EIFFPT--SILAVRMNRK--RLVVCLEE--SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEecCC--ceEEEEEccc--eEEEEEcc--cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 777765 5677777654 45555555 699999999999988753 445566666666777888643 368999
Q ss_pred EEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe-EEEEeCCCCceeEEEecccccCCCccccccccccccCCC
Q 038577 503 LWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ-IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581 (860)
Q Consensus 503 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (860)
+||+.+-+....+..|.+++.+++|+++|.+||++++.|+ |+||.+.+|+.++.++.....
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~------------------ 218 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYP------------------ 218 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCcee------------------
Confidence 9999999888888899999999999999999999999998 899999999999998754321
Q ss_pred CcEEEEEEecCCCEEEEecCCCeEEEEECCCce
Q 038577 582 KCFTTLCYSADGSYILAGGSSKYICMYDVADQV 614 (860)
Q Consensus 582 ~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~ 614 (860)
..|.+++|+||+++|++.++.++|.+|.++...
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 249999999999999999999999999998754
No 179
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=161.46 Aligned_cols=251 Identities=16% Similarity=0.208 Sum_probs=189.4
Q ss_pred cCCceeEEEECCCC-CEEEEE--eCCeEEEEeCCCCC---------cccceeEEEEEeeccCCCeEEEEEcCCC-CeEEE
Q 038577 92 FKYPVNAILFSPNG-KYIAVG--TGKLVQIWRSPGFK---------KEVFAFELIRTLADCNDKVTALNWSPDS-NYLLV 158 (860)
Q Consensus 92 ~~~~v~~~~fspdg-~~la~~--~~~~i~iwd~~~~~---------~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s 158 (860)
|.+.++.+.-++-+ ..+++. ..|.|+||++...- .....+.++.++.+|.+.=..++|||-. ..|++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 66677777777765 333333 77999999976321 1123345688899999999999999933 34888
Q ss_pred eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCC
Q 038577 159 GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE 238 (860)
Q Consensus 159 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~ 238 (860)
|..-+.|++|...++ .+......+.+|+..|..++|+|.... .|++|+-||+|++||++.+..+
T Consensus 230 GDc~~~I~lw~~~~g---~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS~DgsIrIWDiRs~~~~--------- 293 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTG---SWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCSCDGSIRIWDIRSGPKK--------- 293 (440)
T ss_pred CccccceEeeeeccC---ceeecCccccccccchhhhccCCccCc----eEEeeecCceEEEEEecCCCcc---------
Confidence 888889999999876 233455677889999999999998775 9999999999999999986430
Q ss_pred CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC---ceeEEEEeecCceeEEEEEe
Q 038577 239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD---FVCIHLLSISREKITTAVFN 315 (860)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~---~~~~~~~~~~~~~i~~~~~s 315 (860)
.......|.+.|..+.|+..-.+||+|+.||.+.|||++. ++++..++.|..+|+++.|+
T Consensus 294 -----------------~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 294 -----------------AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred -----------------ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 1122256888999999999999999999999999999874 56778999999999999999
Q ss_pred eCCCEEEEEEccCCcEEEEEccCceE-----------E-----EEecCc--ccCeEEEEEcCCC-CEEEEEeCCCcEEEE
Q 038577 316 ELGNWLVFGCAKLGQLLVWEWRSESY-----------I-----LKQQGH--YFDVNCLAYSPDS-QLLATGADDNKVKVW 376 (860)
Q Consensus 316 ~~~~~l~~~~~~~g~i~v~d~~~~~~-----------~-----~~~~~~--~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 376 (860)
|.....+.+++.|.+|.+||+....- + +.+.-| ...+..+.|+++- .++++.+.|| +.||
T Consensus 357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 98888777777789999999853211 0 011122 3457778888863 3677777776 3444
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.9e-17 Score=143.69 Aligned_cols=271 Identities=14% Similarity=0.208 Sum_probs=198.2
Q ss_pred ceEEEEecCCCCEEEEEEcCCeEEEEECCC----------ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE
Q 038577 266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPD----------FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335 (860)
Q Consensus 266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~----------~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d 335 (860)
.|.+-+++|.++++++|..+|.|.++.+.+ ...+...+.|.+++..++|. ...|+++ .+ |.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cC-ceEEEee
Confidence 355567899999999999999999998863 22345568899999999998 3444444 44 9999998
Q ss_pred ccCceE------EEEe--cCc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577 336 WRSESY------ILKQ--QGH-----YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN 402 (860)
Q Consensus 336 ~~~~~~------~~~~--~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 402 (860)
+..... ..+. +.| -..|+++...|..+.+++++.|+.++.||+++|+..+++++|++-|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 865432 1111 112 235889999998888888889999999999999999999999999999998555
Q ss_pred CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcE-------EEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC
Q 038577 403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQF-------VSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG 475 (860)
Q Consensus 403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~ 475 (860)
...+++|+.||++++||.++.++.+.+........ .-.+..-+..++++|+.. .+.+|++++.+....+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp--~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP--KLSLWHLRSSESTCVFP- 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC--ceeEEeccCCCceEEEe-
Confidence 66899999999999999999999887764332211 114445566788877665 69999999999988886
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCC-CEEEEEeCCCeEEEE
Q 038577 476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDG-RQLACSTLDGQIHFW 546 (860)
Q Consensus 476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 546 (860)
-..++..+.| +.+.+++++..+.|.-|.+.. .............++..|+... +++-.++....+.|+
T Consensus 245 ipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 245 IPARVHLVDF--VDDCVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cccceeEeee--ecceEEEeccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 5677888888 456788888888999998743 2222233333445555554433 344445556666665
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.7e-19 Score=161.25 Aligned_cols=251 Identities=17% Similarity=0.310 Sum_probs=188.3
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEee--CCCEEEEEeCCCcEEEEEccccceeeEeeCCC--CCcE
Q 038577 362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMA--NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS--SRQF 437 (860)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~ 437 (860)
..+|++...|.|++||..++..+..++++...+..+.|.. ....+.+++.||+|++||++.......+.... +.+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788899999999999999999999999999999999977 45789999999999999999876665554333 3467
Q ss_pred EEEEECCCCCEEEEEecC---CCeEEEEECCCCce-EEE-ecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCc-
Q 038577 438 VSLASDQSGEVICAGTLD---SFEIFVWSMKTGRL-LDI-LSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGK- 510 (860)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~---~~~i~v~d~~~~~~-~~~-~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~- 510 (860)
.+++....++.+++|..- .-.+.+||++..+. +.. ...|...|+++.|+|. ..+|++||.||-|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 788887788899988652 22799999997765 444 4679999999999995 5789999999999999997653
Q ss_pred --ceeEEcccCCCeEEEEEeeCC-CEEEEEeCCCeEEEEeCCCCceeEEEec--------------------ccccCCCc
Q 038577 511 --GSVESFPHTHDVLTVVYRPDG-RQLACSTLDGQIHFWDPLNGELMYTIEG--------------------RRDISGGR 567 (860)
Q Consensus 511 --~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~~~~~ 567 (860)
.+.....+...|..+.|..++ +.+.+-+..+...+|+++.+.....+.. |.......
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 244555688889999999887 3577778889999999988764433322 11100000
Q ss_pred ccc--------------c--------cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577 568 LMT--------------D--------RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD 612 (860)
Q Consensus 568 ~~~--------------~--------~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~ 612 (860)
... + ........+..-|.++.|...+.++.+||+||.+.+|..+.
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 000 0 00000111233467788888899999999999999999743
No 182
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.7e-16 Score=163.72 Aligned_cols=276 Identities=12% Similarity=0.132 Sum_probs=183.3
Q ss_pred EEcCCCcEEEEEccc-Ce--EEEEeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCC
Q 038577 69 TVDENQRCHFINLHC-HV--VLHRVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDK 143 (860)
Q Consensus 69 ~~~~d~~i~vwd~~~-~~--~~~~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~ 143 (860)
+...++.|.+||+.+ ++ .+..+...+....++++||+++|+++ .++.|.+|++..... +....... ..+.
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~----l~~~~~~~-~~~~ 81 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA----LTFAAESP-LPGS 81 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc----eEEeeeec-CCCC
Confidence 346689999999964 43 55556666778899999999998777 578999999973211 11122222 2345
Q ss_pred eEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE-cCCccEEEe
Q 038577 144 VTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI-ARDCYMFSW 221 (860)
Q Consensus 144 v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~-~~dg~i~~w 221 (860)
...++|+|+++++++++. ++.|.+|+++..... ......+ .+......++++|+++ +++++ ..++.|.+|
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~--~~~~~~~-~~~~~~~~~~~~p~g~-----~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP--VAPIQII-EGLEGCHSANIDPDNR-----TLWVPCLKEDRIRLF 153 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC--CCceeec-cCCCcccEeEeCCCCC-----EEEEeeCCCCEEEEE
Confidence 678999999998888764 789999999743111 0111122 2334467788999998 77554 456999999
Q ss_pred eecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc-CCeEEEEECCC--c--
Q 038577 222 GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS-NGVFGLYQMPD--F-- 296 (860)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~~~~~--~-- 296 (860)
++++... ..... ...... ........+.|+|++++++++.. ++.|.+|++.. +
T Consensus 154 d~~~~g~-l~~~~--------------------~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~ 211 (330)
T PRK11028 154 TLSDDGH-LVAQE--------------------PAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEI 211 (330)
T ss_pred EECCCCc-ccccC--------------------CCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCE
Confidence 9976221 00000 000000 11234567899999999988876 89999999963 2
Q ss_pred eeEEEEeecC------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc---ccCeEEEEEcCCCCEEEEE
Q 038577 297 VCIHLLSISR------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH---YFDVNCLAYSPDSQLLATG 367 (860)
Q Consensus 297 ~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~ 367 (860)
+.+..+.... .....+.++|+|++++++...++.|.+|++.......++..+ ......++++|+|++|+++
T Consensus 212 ~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va 291 (330)
T PRK11028 212 ECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAA 291 (330)
T ss_pred EEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEE
Confidence 2333333211 123358899999999998777799999998654322222121 1245678999999999987
Q ss_pred eC-CCcEEEEECC
Q 038577 368 AD-DNKVKVWTVS 379 (860)
Q Consensus 368 ~~-dg~i~iwd~~ 379 (860)
.. +++|.+|+++
T Consensus 292 ~~~~~~v~v~~~~ 304 (330)
T PRK11028 292 GQKSHHISVYEID 304 (330)
T ss_pred EccCCcEEEEEEc
Confidence 76 8899999874
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=6.3e-19 Score=156.02 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=201.6
Q ss_pred eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 298 CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVW 376 (860)
Q Consensus 298 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 376 (860)
+...++.+...++++.|-.+++ |+.+... |.+.+|++.+......++ .+...|+.+..-|+ ..+.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~-G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSV-GIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccchh-hhccccc-ceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 3445667888899999988887 5555444 999999999998888887 57778999998887 468888999999999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEeeCC-----C---EEEEEeCCCc--EEEEEccccceeeEeeC---CCCCcEEEEEE-
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFMANN-----H---SLLSASLDGT--VRAWDLFRYRNFRTFTT---PSSRQFVSLAS- 442 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~~~~-----~---~l~s~~~dg~--i~~wd~~~~~~~~~~~~---~~~~~~~~~~~- 442 (860)
++.-+..+. .|+-.+.++.|++.. + .++..-..|. +.+-|......++.... +....+.+..+
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 997654332 244445555555421 1 1111100010 11122111111111111 11223444442
Q ss_pred -CCCCCEEEEEecCCCeEEEEECCCC----------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 038577 443 -DQSGEVICAGTLDSFEIFVWSMKTG----------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG 511 (860)
Q Consensus 443 -~~~~~~l~~~~~~~~~i~v~d~~~~----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 511 (860)
.....+++.++...+.+.+||+.++ +.......|..+|.++.+.+.-..=++++.+..+..|++.....
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 2223445555555459999999998 34444557999999999988666667888888899999876532
Q ss_pred ee----EEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEE
Q 038577 512 SV----ESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTL 587 (860)
Q Consensus 512 ~~----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 587 (860)
.. +..-....+..+..-||++.+|+++.|+.|+||..++.+++..+.-|.. .|.++
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--------------------gvn~v 299 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--------------------GVNAV 299 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--------------------ceeEE
Confidence 11 2223455688999999999999999999999999999999999999986 59999
Q ss_pred EEecCCCEEEEecCCCeEEEEEC
Q 038577 588 CYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 588 ~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
+|+||...+++++.|++|.+|++
T Consensus 300 Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999986
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.81 E-value=1.1e-16 Score=149.41 Aligned_cols=296 Identities=17% Similarity=0.239 Sum_probs=204.4
Q ss_pred eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEE
Q 038577 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD--NKVKVWTVSSGFCFV 385 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~ 385 (860)
.+..+.|+.+...|..++.+ ..++|+................|.-+-|+.. ++|..+.+ +.+++++...+..+.
T Consensus 7 ti~~~~~Nqd~~~lsvGs~~--Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 7 TINFIGFNQDSTLLSVGSKD--GYKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred ceeeeeeccceeEEEccCCC--ceeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceEE
Confidence 45555677776666666543 3456665543332222222233555556644 45554443 458999998887777
Q ss_pred EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC--CCCcEEEEEECCCCCEEEE-EecCCCeEEEE
Q 038577 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP--SSRQFVSLASDQSGEVICA-GTLDSFEIFVW 462 (860)
Q Consensus 386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~i~v~ 462 (860)
.+. ...+|.++.++.+ +|+++=.+ .|.+||+++.+.+.++... +...+.++.+++.+.+++. ++.+.|.|.+|
T Consensus 83 e~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred EEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 764 5678999998755 56666554 4999999999999888765 4555777777778889887 44455699999
Q ss_pred ECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc-EEEEEccCCcceeEEcc--cCCCeEEEEEeeCCCEEEEEeC
Q 038577 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT-VRLWNVFEGKGSVESFP--HTHDVLTVVYRPDGRQLACSTL 539 (860)
Q Consensus 463 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~ 539 (860)
|+.+-+.+..+..|.+++.+++|+++|.+|||+|+.|+ |||+.+.+++.+.++.. ....|.+++|+|++++|++.+.
T Consensus 159 d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 159 DTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred EcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC
Confidence 99999999999999999999999999999999999987 79999999998888774 3556889999999999999999
Q ss_pred CCeEEEEeCCCCceeEEEecccccCC--Ccccc----------------ccccc---cccCCCCcEEEEEEecCCCEEEE
Q 038577 540 DGQIHFWDPLNGELMYTIEGRRDISG--GRLMT----------------DRRSA---ANSSSGKCFTTLCYSADGSYILA 598 (860)
Q Consensus 540 dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~----------------~~~~~---~~~~~~~~i~~l~~s~~g~~l~~ 598 (860)
.++|++|.+..-. ...........+ +.... .+..+ .+......+..+.-.+...++.+
T Consensus 239 TeTVHiFKL~~~~-~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~v 317 (391)
T KOG2110|consen 239 TETVHIFKLEKVS-NNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLV 317 (391)
T ss_pred CCeEEEEEecccc-cCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEE
Confidence 9999999987543 111110000000 00000 00000 01111123444443457889999
Q ss_pred ecCCCeEEEEECCC
Q 038577 599 GGSSKYICMYDVAD 612 (860)
Q Consensus 599 ~~~dg~v~vwd~~~ 612 (860)
++.||.++.|.++.
T Consensus 318 as~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 318 ASYDGHLYSYRLPP 331 (391)
T ss_pred EEcCCeEEEEEcCC
Confidence 99999999998864
No 185
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.81 E-value=6.2e-15 Score=141.89 Aligned_cols=425 Identities=14% Similarity=0.127 Sum_probs=260.0
Q ss_pred CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEE-------cCCCcEEEEEcccCeEEEEeecCC
Q 038577 22 QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTV-------DENQRCHFINLHCHVVLHRVRFKY 94 (860)
Q Consensus 22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~-------~~d~~i~vwd~~~~~~~~~~~~~~ 94 (860)
-|..|++.+...+..+++.+|+.+.+. .|-+-|+...|+|||+.+|.. ...+.+.+.+.+.|+..+..-+..
T Consensus 49 ~GD~IiFt~~DdlWe~slk~g~~~rit-S~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr 127 (668)
T COG4946 49 YGDRIIFTCCDDLWEYSLKDGKPLRIT-SGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGR 127 (668)
T ss_pred cCcEEEEEechHHHHhhhccCCeeEEe-cccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEecc
Confidence 577787777788888999999988876 678889999999999999972 224678888989998877655555
Q ss_pred ceeEE-EECCCCCEEEEEeC-----CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEE
Q 038577 95 PVNAI-LFSPNGKYIAVGTG-----KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLF 168 (860)
Q Consensus 95 ~v~~~-~fspdg~~la~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vw 168 (860)
+-+.+ -|+|||+.|++..- .--.+|.+..... ..-.-.-++.+.+.+- || .++.|-.-
T Consensus 128 ~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~--------~~e~LnlGpathiv~~-dg-~ivigRnt------ 191 (668)
T COG4946 128 RFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGI--------KTEPLNLGPATHIVIK-DG-IIVIGRNT------ 191 (668)
T ss_pred ccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCc--------eeeeccCCceeeEEEe-CC-EEEEccCc------
Confidence 55544 59999999988721 1122232222110 0001112223333332 22 22222111
Q ss_pred eecccccCcccccceEeecCCCcEEEEEE-ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577 169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFF-SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER 247 (860)
Q Consensus 169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~-~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (860)
.....+.+-.+.-...-| +.++. .+.-++.|+++.
T Consensus 192 -----------ydLP~WK~YkGGtrGklWis~d~g------------~tFeK~vdl~~~--------------------- 227 (668)
T COG4946 192 -----------YDLPHWKGYKGGTRGKLWISSDGG------------KTFEKFVDLDGN--------------------- 227 (668)
T ss_pred -----------ccCcccccccCCccceEEEEecCC------------cceeeeeecCCC---------------------
Confidence 112222222222222222 11111 112233333332
Q ss_pred eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC--eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEE
Q 038577 248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG--VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGC 325 (860)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 325 (860)
|++-..- .++.......+| +++--|+. ++-++.... -..-.+-..+.||+.+++..
T Consensus 228 -------------------vS~PmIV-~~RvYFlsD~eG~GnlYSvdld-GkDlrrHTn-FtdYY~R~~nsDGkrIvFq~ 285 (668)
T COG4946 228 -------------------VSSPMIV-GERVYFLSDHEGVGNLYSVDLD-GKDLRRHTN-FTDYYPRNANSDGKRIVFQN 285 (668)
T ss_pred -------------------cCCceEE-cceEEEEecccCccceEEeccC-CchhhhcCC-chhccccccCCCCcEEEEec
Confidence 1111111 111222333333 33333342 222211110 01233344567899998876
Q ss_pred ccCCcEEEEEccCceEEEEecC---c---cc-----CeEEEE-EcC-CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC
Q 038577 326 AKLGQLLVWEWRSESYILKQQG---H---YF-----DVNCLA-YSP-DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN 392 (860)
Q Consensus 326 ~~~g~i~v~d~~~~~~~~~~~~---~---~~-----~v~~~~-~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 392 (860)
. |.|.+||..+......--+ . .. +..-+. |++ +|.+++..+. |...+.+...+..++. +|..
T Consensus 286 ~--GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~ 360 (668)
T COG4946 286 A--GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKG 360 (668)
T ss_pred C--CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCC
Confidence 5 8999999887654332111 0 00 000111 222 6888988887 7888888766655543 4677
Q ss_pred ceEEEEEeeCCCEEEEEeCCC-cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577 393 AVTALHFMANNHSLLSASLDG-TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD 471 (860)
Q Consensus 393 ~v~~i~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~ 471 (860)
.|.-..+..++..++.|..|| .+-++|..+++..+... .-..+.++..+++|++++++.... ++.++|+.+|....
T Consensus 361 ~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~-el~vididngnv~~ 437 (668)
T COG4946 361 GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRF-ELWVIDIDNGNVRL 437 (668)
T ss_pred ceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCce-EEEEEEecCCCeeE
Confidence 788888888888899999999 89999998876544332 334789999999999999988777 99999999998877
Q ss_pred EecCcccCeEEEEEcCCCCEEEEEeCCC----cEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEe
Q 038577 472 ILSGHEGPVHGLVFSPTNATLASSSWDK----TVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACST 538 (860)
Q Consensus 472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 538 (860)
.-+...+-|+.+.|||+++++|-+--+| .|+++|+.+++ +.......+.=.+-+|.||+++|.--+
T Consensus 438 idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 438 IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EEEecCCcccccCcccCCCCcEEEEEe
Confidence 7677788999999999999999887665 58999998887 444444444445668888888776543
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.81 E-value=1.1e-16 Score=165.20 Aligned_cols=267 Identities=10% Similarity=0.095 Sum_probs=185.9
Q ss_pred EEEEcCCeEEEEECCC-ce--eEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-ceE--EEEecCcccCeE
Q 038577 280 VVGFSNGVFGLYQMPD-FV--CIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-ESY--ILKQQGHYFDVN 353 (860)
Q Consensus 280 ~~~~~~g~i~~~~~~~-~~--~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-~~~--~~~~~~~~~~v~ 353 (860)
++...++.|.+|++.+ ++ .+..+.. .+....++++|+++.|++++..++.|.+|++.. +.. .... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 3446689999999964 32 3444433 356778999999999988887779999999873 332 2222 2233567
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEECCC-Ce---eEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccccceee
Q 038577 354 CLAYSPDSQLLATGAD-DNKVKVWTVSS-GF---CFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFR 427 (860)
Q Consensus 354 ~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~ 427 (860)
.++++|+++++++++. ++.|.+|++++ +. .+..+. +...+..++++|+++++++++ .++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 8999999998888764 78999999964 32 222222 334567889999998886554 56899999997643221
Q ss_pred -----EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC--Cc--eEEEecCc------ccCeEEEEEcCCCCEE
Q 038577 428 -----TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT--GR--LLDILSGH------EGPVHGLVFSPTNATL 492 (860)
Q Consensus 428 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~--~~--~~~~~~~h------~~~v~~l~~s~~~~~l 492 (860)
....+.......++++|+|++++++....+.|.+|+++. ++ .+..+..+ ......+.++|+++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 122223345678999999999999988555999999973 33 23333221 1123468899999999
Q ss_pred EEEeC-CCcEEEEEccCCcceeEEcc---cCCCeEEEEEeeCCCEEEEEeC-CCeEEEEeCC
Q 038577 493 ASSSW-DKTVRLWNVFEGKGSVESFP---HTHDVLTVVYRPDGRQLACSTL-DGQIHFWDPL 549 (860)
Q Consensus 493 ~s~~~-dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~ 549 (860)
+++.. ++.|.+|++........... .......+.++|||++|+++.. +++|.+|+++
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 88854 78999999965442222222 1234567899999999998875 8899999874
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=1.3e-17 Score=162.40 Aligned_cols=346 Identities=18% Similarity=0.235 Sum_probs=233.8
Q ss_pred ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE-EEEEEcc--CCCCCccceEEEEcCC
Q 038577 139 DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV-VGCFFSV--DKKTDKVNRIYTIARD 215 (860)
Q Consensus 139 ~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i-~~~~~~~--~~~~~~~~~l~s~~~d 215 (860)
.|...+.|+.|+.....+.+++.+..+.-|++.+. +. ....+. .+.+ +.+..-+ .+.......++.++.|
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~-s~----~~~~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~D 84 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRD-SV----EVAKLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSND 84 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccch-hh----hhhhCC--cccCCccccccccccCCCCCcceEEEEcCC
Confidence 46667789999987776666555444444455443 11 111111 1111 1111111 1111123378899999
Q ss_pred ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC
Q 038577 216 CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD 295 (860)
Q Consensus 216 g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~ 295 (860)
|.+.+.+-.... ......|.+.+.+-.|+|+|.-|++.+.||.|.+|.- +
T Consensus 85 Gkf~il~k~~rV-----------------------------E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-s 134 (737)
T KOG1524|consen 85 GRFVILNKSARV-----------------------------ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-S 134 (737)
T ss_pred ceEEEecccchh-----------------------------hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-c
Confidence 999888765532 2344568889999999999999999999999999997 4
Q ss_pred ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038577 296 FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKV 375 (860)
Q Consensus 296 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 375 (860)
|-...++.....+|.|++|.|+.+.++++.+ +.+.+=.+.....+.+.+.|.+-|.++.|++..+.+++|+.|-..++
T Consensus 135 GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 135 GMLRSTVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred chHHHHHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEe
Confidence 5444555566779999999999999998866 78888888888888889999999999999999999999999999999
Q ss_pred EECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577 376 WTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD 455 (860)
Q Consensus 376 wd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (860)
||.. |..+..-..|..+|++++|.|+ ..++.++. .+++ +..+....+..++||+||..+++|+..
T Consensus 213 WD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 213 WDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred eccc-CcccccCChhccceeeeeeccc-cceeeeee-eeee------------ecCCCccceEEEEEcCCCceeeccccC
Confidence 9964 7777777889999999999999 44555543 2343 555667789999999999999999988
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEE
Q 038577 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLA 535 (860)
Q Consensus 456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 535 (860)
| .+.+-..-..+.. -+.+=++......|.+-|+.++.+ .....+..+...+.. -.+|+
T Consensus 278 G-~v~~A~~ieq~l~-----------------~~n~~~t~~~r~~I~vrdV~~~v~--d~LE~p~rv~k~sL~--Y~hLv 335 (737)
T KOG1524|consen 278 G-QLIVAYAIEQQLV-----------------SGNLKATSKSRKSITVRDVATGVQ--DILEFPQRVVKFSLG--YGHLV 335 (737)
T ss_pred c-eEEEeeeehhhhh-----------------hccceeEeeccceEEeehhhhhHH--HHhhCccceeeeeec--eeEEE
Confidence 7 3332211111100 122223334455566777666542 344455555555543 23444
Q ss_pred EEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 536 CSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 536 ~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
++. ...+++|.-......-.+.+..
T Consensus 336 vaT-s~qvyiys~knwntpiiidgre 360 (737)
T KOG1524|consen 336 VAT-SLQVYIYSEKNWNTPIIIDGRE 360 (737)
T ss_pred EEe-ccEEEEEecCCccCcEEEeccc
Confidence 443 3457777765555444555444
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=6.3e-18 Score=157.84 Aligned_cols=317 Identities=19% Similarity=0.274 Sum_probs=225.3
Q ss_pred EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEee--cCCCcEEEEEEccCCCCCccceEEE
Q 038577 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLL--GHRDSVVGCFFSVDKKTDKVNRIYT 211 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~~~~~l~s 211 (860)
.+.+.+|.+.|.++.||.++++|++|+.|..+++|+++..... ....+..+. .|...|.+++|..... .+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~-k~~KPI~~~~~~H~SNIF~L~F~~~N~-----~~~S 122 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVR-KTPKPIGVMEHPHRSNIFSLEFDLENR-----FLYS 122 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhh-cCCCCceeccCccccceEEEEEccCCe-----eEec
Confidence 3556789999999999999999999999999999999865211 111233333 4668999999998888 9999
Q ss_pred EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEE
Q 038577 212 IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLY 291 (860)
Q Consensus 212 ~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~ 291 (860)
|+.+++|..-|+++.+.. ....-....+.|..+..+|-.+.+++.+.+|.|.+|
T Consensus 123 G~~~~~VI~HDiEt~qsi--------------------------~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 123 GERWGTVIKHDIETKQSI--------------------------YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFI 176 (609)
T ss_pred CCCcceeEeeecccceee--------------------------eeecccCcccceeecccCCCCceEEEEecCceEEEE
Confidence 999999999999985430 011112234589999999999999999999999999
Q ss_pred ECCCcee---EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE-Ee------cCcccCeEEEEEcCCC
Q 038577 292 QMPDFVC---IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL-KQ------QGHYFDVNCLAYSPDS 361 (860)
Q Consensus 292 ~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~-~~------~~~~~~v~~~~~s~~~ 361 (860)
|...... +..+.........+.|+|....|+.+....+-+.+||.+...... .. +.....-.++.|+|+|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 9876542 222333445678899999998888877777999999987643211 11 1112223567899999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeecCC-------CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC
Q 038577 362 QLLATGADDNKVKVWTVSSGFCFVTFTEHT-------NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS 434 (860)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 434 (860)
+.+.+--....-.+||+-+..+...-..|+ ..+.+++|..|. .+++|+.+-.|.+|.+.......-+
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~----- 330 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGF----- 330 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCc-----
Confidence 999887766666778887654433322333 346778887665 4899999999999988542211110
Q ss_pred CcEEEEEECCCCCEEEEEecCC---CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577 435 RQFVSLASDQSGEVICAGTLDS---FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 507 (860)
+. +|.... ..|.| .+.+..++||..-+..+.|+|...+|++.+-.+.+++|.-.
T Consensus 331 ---~~-----------IG~~~~~~~~~~~i-----~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 331 ---TQ-----------IGHDEEEMPSEIFI-----EKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ---cc-----------cCcchhhCchhhee-----cceeEEEecccccccceeecCCcceEeccchhhheeccccc
Confidence 00 010000 01111 23466789999999999999999999999999999999753
No 189
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.4e-18 Score=170.76 Aligned_cols=259 Identities=21% Similarity=0.282 Sum_probs=201.5
Q ss_pred EEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC--------ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 301 LLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS--------ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNK 372 (860)
Q Consensus 301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~--------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 372 (860)
++..+.+.++.++|.+....+++++.+ |.+.+|+++. -+.+.++++|.++|.|+++.+++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed-~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASED-GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccc-cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 566777889999999999999888776 9999999932 2567888999999999999999999999999999
Q ss_pred EEEEECCCC----------eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC-CcEEEEE
Q 038577 373 VKVWTVSSG----------FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS-RQFVSLA 441 (860)
Q Consensus 373 i~iwd~~~~----------~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~ 441 (860)
|+.|++... .....+.+|.+.|+.+++++....|++++.||+++.|+...... .++..+.. ....++.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999966421 23456789999999999999999999999999999999866555 33433322 2234455
Q ss_pred ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc-------ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE
Q 038577 442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH-------EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE 514 (860)
Q Consensus 442 ~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 514 (860)
+......+.+++...+.-.++++..+..+..+... ...+..+.++|.+.+.+++..|+.|+++|..++..+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 44333222222222213444455544444444321 23467788999999999999999999999999998888
Q ss_pred EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 515 SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 515 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
...|...++++++.|+|-+|++++.||.+++|.+....++.....|+
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 88999999999999999999999999999999998887777666554
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.79 E-value=3.5e-17 Score=149.50 Aligned_cols=233 Identities=16% Similarity=0.193 Sum_probs=185.0
Q ss_pred cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577 92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~ 170 (860)
...+|+|.+|++|+..+|++ ....|.||...+.. .++..+++..|...|+++.|+|.++.|++++.|+.-.||..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~----~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCC----CceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 46899999999999999999 66799999988765 35578999999999999999999999999999999999998
Q ss_pred cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK 250 (860)
Q Consensus 171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (860)
..+.+. .....+..++...+++.|+|.++ .+++++.-..|.+|-.+...
T Consensus 85 ~~~~~W---kptlvLlRiNrAAt~V~WsP~en-----kFAVgSgar~isVcy~E~EN----------------------- 133 (361)
T KOG1523|consen 85 PSGGTW---KPTLVLLRINRAATCVKWSPKEN-----KFAVGSGARLISVCYYEQEN----------------------- 133 (361)
T ss_pred CCCCee---ccceeEEEeccceeeEeecCcCc-----eEEeccCccEEEEEEEeccc-----------------------
Confidence 544244 45677888999999999999999 99999999999999887642
Q ss_pred eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC------------------CceeEEEEeecCceeEEE
Q 038577 251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP------------------DFVCIHLLSISREKITTA 312 (860)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~------------------~~~~~~~~~~~~~~i~~~ 312 (860)
.|-+. +..-....+.|.++.|+|++-++++|+.|+..+++..- -++.+.++....+.+..+
T Consensus 134 dWWVs-KhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 134 DWWVS-KHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred ceehh-hhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 34332 23334566789999999999999999999999999641 233344444556789999
Q ss_pred EEeeCCCEEEEEEccCCcEEEEEccCce-EEEEecCcccCeEEEEEcCCC
Q 038577 313 VFNELGNWLVFGCAKLGQLLVWEWRSES-YILKQQGHYFDVNCLAYSPDS 361 (860)
Q Consensus 313 ~~s~~~~~l~~~~~~~g~i~v~d~~~~~-~~~~~~~~~~~v~~~~~s~~~ 361 (860)
.|+|+|..|+..+.+ +.+.+-|..... .+.......-+..++.|-.+.
T Consensus 213 ~fs~sG~~lawv~Hd-s~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 213 LFSPSGNRLAWVGHD-STVSFVDAAGPSERVQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred EeCCCCCEeeEecCC-CceEEeecCCCchhccchhhccCCceeeEeecCC
Confidence 999999999999887 888888876654 233332223556666665443
No 191
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=2.2e-17 Score=148.25 Aligned_cols=261 Identities=17% Similarity=0.174 Sum_probs=187.5
Q ss_pred EEEe--CCCEEEeeeC--------CeEEEEECCCCcE---------Eeec-cCCccCeeEEEEcCCCCEEEEEcCCCcEE
Q 038577 18 AVLS--QNTKLISPVG--------NRVSVTDLIKSKT---------VTLP-VESSSNICRIAVSPDGTFLLTVDENQRCH 77 (860)
Q Consensus 18 ~~~s--dg~~l~~~~~--------~~i~v~d~~~~~~---------~~~~-~~h~~~v~~va~spdg~~la~~~~d~~i~ 77 (860)
++-+ |.+.|++... ..+.||.+..... +..+ ..+-+.|.|+.|.|++..||+-. ++.|.
T Consensus 69 las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~ 147 (370)
T KOG1007|consen 69 LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIV 147 (370)
T ss_pred hhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceE
Confidence 4444 7777776532 2478998864332 1222 24567899999999999999877 78999
Q ss_pred EEEcccCeE-EEEee------cCCceeEEEECC--CCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE
Q 038577 78 FINLHCHVV-LHRVR------FKYPVNAILFSP--NGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN 148 (860)
Q Consensus 78 vwd~~~~~~-~~~~~------~~~~v~~~~fsp--dg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 148 (860)
+|++..+.. +..+. +....++-+||| ||..+++..+++++.||+.+..+ ....-..|...|..+.
T Consensus 148 l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~------~~sI~dAHgq~vrdlD 221 (370)
T KOG1007|consen 148 LWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK------NNSIEDAHGQRVRDLD 221 (370)
T ss_pred EEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhh------hcchhhhhcceeeecc
Confidence 999998765 44443 355678889999 89999999999999999998764 2334457888999999
Q ss_pred EcCCCC-eEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCC
Q 038577 149 WSPDSN-YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGND 227 (860)
Q Consensus 149 ~s~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~ 227 (860)
|+|+.+ +|++++.||.|++||.... . .....+.+|...|+++.|.|.... .+++++.|..|.+|....-.
T Consensus 222 fNpnkq~~lvt~gDdgyvriWD~R~t--k---~pv~el~~HsHWvW~VRfn~~hdq----LiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 222 FNPNKQHILVTCGDDGYVRIWDTRKT--K---FPVQELPGHSHWVWAVRFNPEHDQ----LILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred CCCCceEEEEEcCCCccEEEEeccCC--C---ccccccCCCceEEEEEEecCccce----EEEecCCCceeEEEeccccc
Confidence 999874 6889999999999999876 2 467899999999999999997654 89999999999999876543
Q ss_pred CCCccccCCCCC-CCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE-EEEEEcCCeEEEEECC
Q 038577 228 GKIDETMEDSEP-PSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM-VVVGFSNGVFGLYQMP 294 (860)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~g~i~~~~~~ 294 (860)
.........+.. .+......+.+...--....+..|...|.+++|+..... +|+-+.||.+.|=+++
T Consensus 293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 222111111111 111111111111111123456778999999999987766 5577889998887664
No 192
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.5e-17 Score=173.25 Aligned_cols=290 Identities=16% Similarity=0.261 Sum_probs=219.2
Q ss_pred eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc---ccCeEEEEEcC--CCCEEEEEeCCCcEEEEECC-C-
Q 038577 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH---YFDVNCLAYSP--DSQLLATGADDNKVKVWTVS-S- 380 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~-~- 380 (860)
....+.|+|-...++++... -.|.+||++.++....+..+ ...|+.+.+-. |...+++|+.||.|+||+-- +
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r-~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDR-ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCceeeecCCCceeEEcCCc-ceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 45677888888888887655 79999999999988877543 45678887754 45689999999999999743 2
Q ss_pred ---CeeEEEeec-------CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-CCCEE
Q 038577 381 ---GFCFVTFTE-------HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-SGEVI 449 (860)
Q Consensus 381 ---~~~~~~~~~-------~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 449 (860)
.+.+....+ ..+.=.-+.|.....+|+++|.-..|++||..+......++......++++..+. .|+.+
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNII 1224 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceE
Confidence 122222211 1111134567666667888887889999999999999988888877788877654 46999
Q ss_pred EEEecCCCeEEEEECCCC---ceEEEecCcccC--eEEEEEcCCCC-EEEEEeCCCcEEEEEccCCcce--eEEccc---
Q 038577 450 CAGTLDSFEIFVWSMKTG---RLLDILSGHEGP--VHGLVFSPTNA-TLASSSWDKTVRLWNVFEGKGS--VESFPH--- 518 (860)
Q Consensus 450 ~~~~~~~~~i~v~d~~~~---~~~~~~~~h~~~--v~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~--- 518 (860)
++|..|| .+++||.+.. ..+...+.|... |..+.+.+.|- .|++|+.||.|++||++..... .....|
T Consensus 1225 ~AGfaDG-svRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1225 AAGFADG-SVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEeecCC-ceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999 9999998854 356777888877 99999998764 4999999999999999874211 111222
Q ss_pred CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEE
Q 038577 519 THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA 598 (860)
Q Consensus 519 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 598 (860)
.+..+++..+++...+|+|+. +.|+||++ .|+.+..++.+....+. .-..+.+++|.|---.|++
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~-~G~~l~~~k~n~~F~~q-------------~~gs~scL~FHP~~~llAa 1368 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSL-SGEQLNIIKYNPGFMGQ-------------RIGSVSCLAFHPHRLLLAA 1368 (1387)
T ss_pred CccceeeeeccCCCeeeecCc-ceEEEEec-ChhhhcccccCcccccC-------------cCCCcceeeecchhHhhhh
Confidence 335999999999999999998 89999998 56666666644322111 1234799999999999999
Q ss_pred ecCCCeEEEEECCCce
Q 038577 599 GGSSKYICMYDVADQV 614 (860)
Q Consensus 599 ~~~dg~v~vwd~~~~~ 614 (860)
|..|.+|.||..+.+.
T Consensus 1369 G~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1369 GSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ccCCceEEEeecCCcC
Confidence 9999999999887653
No 193
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.78 E-value=1e-15 Score=156.06 Aligned_cols=317 Identities=13% Similarity=0.076 Sum_probs=204.8
Q ss_pred eCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577 30 VGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA 109 (860)
Q Consensus 30 ~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la 109 (860)
.++.|.+.|..+.+...........-..++|+|||+++.+++.||.|.++|+.+++.+.+++......++++||||++++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVY 93 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEE
Confidence 46899999999999877764333333557899999999999999999999999999999999888899999999999999
Q ss_pred EE--eCCeEEEEeCCCCCcccceeEEEEEeec-------cCCCeEEEEEcCCCCeEEEeecC-CeEEEEeecccccCccc
Q 038577 110 VG--TGKLVQIWRSPGFKKEVFAFELIRTLAD-------CNDKVTALNWSPDSNYLLVGSKD-LAVRLFYVKEKLKGIHT 179 (860)
Q Consensus 110 ~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~s~d~~~l~s~~~d-g~v~vwd~~~~~~~~~~ 179 (860)
++ ..+.+.++|..+.+. ++.+.. ...++.++..+|....++..-.| +.|.+-|.... .
T Consensus 94 v~n~~~~~v~v~D~~tle~-------v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~-~---- 161 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEP-------VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP-K---- 161 (369)
T ss_dssp EEEEETTEEEEEETTT--E-------EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS-S----
T ss_pred EEecCCCceeEeccccccc-------eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc-c----
Confidence 88 789999999998773 444432 23567888889988866655554 77777676554 1
Q ss_pred ccceEeecCCCcEEEEEEccCCCCCccceEEE-EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec
Q 038577 180 NKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT-IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD 258 (860)
Q Consensus 180 ~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s-~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (860)
.................|+|+++ +++. ...+..+-++|..++.. ...+..
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgr-----y~~va~~~sn~i~viD~~~~k~----------------------v~~i~~-- 212 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGR-----YFLVAANGSNKIAVIDTKTGKL----------------------VALIDT-- 212 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSS-----EEEEEEGGGTEEEEEETTTTEE----------------------EEEEE---
T ss_pred ccceeeecccccccccccCcccc-----eeeecccccceeEEEeeccceE----------------------EEEeec--
Confidence 12223334456677889999998 7655 45667888998776422 111100
Q ss_pred cccCCCCceEEE---------EecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEE---Ec
Q 038577 259 DFSQAPSKVTAC---------DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFG---CA 326 (860)
Q Consensus 259 ~~~~~~~~v~~~---------~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~---~~ 326 (860)
.-..+..+...+ .....+...+..-..+.+.+|+..+.+.++.+...... ..+..+|+++++.+. +.
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~ 291 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNP 291 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-S
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCC
Confidence 001111111111 11112233333333345567888889999999987766 888889999999998 55
Q ss_pred cCCcEEEEEccCceEEEEecCc-ccCeEEEEEcCCCCEEEEEeCC--CcEEEEECCCCeeEEEee
Q 038577 327 KLGQLLVWEWRSESYILKQQGH-YFDVNCLAYSPDSQLLATGADD--NKVKVWTVSSGFCFVTFT 388 (860)
Q Consensus 327 ~~g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~ 388 (860)
+.+.|.++|.++.+....+... ...+..+.|+++|+.+.....+ +.|.+||..+.+.+..+.
T Consensus 292 ~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 292 DADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 5689999999999877776432 2358899999999977665543 369999999999988876
No 194
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=2.9e-17 Score=147.46 Aligned_cols=269 Identities=16% Similarity=0.197 Sum_probs=198.2
Q ss_pred CCeEEEEECC--CCcE-EeeccCCccCeeEEEEcCCC-CEEEEEcCC-------CcEEEEEcccC---------eEEEEe
Q 038577 31 GNRVSVTDLI--KSKT-VTLPVESSSNICRIAVSPDG-TFLLTVDEN-------QRCHFINLHCH---------VVLHRV 90 (860)
Q Consensus 31 ~~~i~v~d~~--~~~~-~~~~~~h~~~v~~va~spdg-~~la~~~~d-------~~i~vwd~~~~---------~~~~~~ 90 (860)
++.|.+.++. .++. ...+..|.++|..++-+|-. +.|+++..+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 3666666554 4444 34455678999999999955 556665332 24679987643 333444
Q ss_pred e--cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC--CCCeEEEeecCCeEE
Q 038577 91 R--FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP--DSNYLLVGSKDLAVR 166 (860)
Q Consensus 91 ~--~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--d~~~l~s~~~dg~v~ 166 (860)
. +-+.|.|+.|.|++..+|+-.++.|.+|++..+....... +...-.+|....++-+||| ||+.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev-~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEV-LSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheee-cccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 3 4568999999999999999999999999998776421111 1111223566788889999 77777766 478999
Q ss_pred EEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc
Q 038577 167 LFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE 246 (860)
Q Consensus 167 vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (860)
.||+.+. . .....-..|...|..+.|.|+.+. +|+++++||.|++||......
T Consensus 197 ~~D~RT~-~----~~~sI~dAHgq~vrdlDfNpnkq~----~lvt~gDdgyvriWD~R~tk~------------------ 249 (370)
T KOG1007|consen 197 FWDLRTM-K----KNNSIEDAHGQRVRDLDFNPNKQH----ILVTCGDDGYVRIWDTRKTKF------------------ 249 (370)
T ss_pred EEEccch-h----hhcchhhhhcceeeeccCCCCceE----EEEEcCCCccEEEEeccCCCc------------------
Confidence 9999987 1 123445678899999999999875 899999999999999986432
Q ss_pred ceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEEEEcCCeEEEEECCC-----------------------------c
Q 038577 247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVVGFSNGVFGLYQMPD-----------------------------F 296 (860)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~g~i~~~~~~~-----------------------------~ 296 (860)
....+.+|...|.++.|+|.- +++++|+.|..|.+|...+ .
T Consensus 250 ---------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~d 320 (370)
T KOG1007|consen 250 ---------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQD 320 (370)
T ss_pred ---------cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccc
Confidence 245567888999999999975 4566899999999986531 1
Q ss_pred eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 297 VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 297 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
..+.++..|.+.|.+++|+.-..+++++-+.||.+.|-.+.
T Consensus 321 g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 321 GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12345667888999999999999999998888988876553
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=4.4e-18 Score=167.30 Aligned_cols=274 Identities=16% Similarity=0.213 Sum_probs=205.6
Q ss_pred eEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc--cCcccccceEeecCCCcEEEEEEccCCCCCccce
Q 038577 131 FELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL--KGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNR 208 (860)
Q Consensus 131 ~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~--~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~ 208 (860)
|.+..++..|.+.|+.++|.|-...|++++.||.+.+|+++... .........++.+|.++|.++++.++++ .
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~-----~ 358 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE-----H 358 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce-----E
Confidence 34455788899999999999999999999999999999993321 2222356789999999999999999999 9
Q ss_pred EEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEE-eeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577 209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWG-LLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV 287 (860)
Q Consensus 209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 287 (860)
+++++.||+|+.|++...... . + ... ......+.+|.+.++.+++++....|++++.||+
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp--------~---d--------s~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgT 419 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDP--------D---D--------SYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGT 419 (577)
T ss_pred EEeeccCceeeeeccCCCCCc--------c---c--------ccCcchhccceeccccceeeeeecccccceeeecCCce
Confidence 999999999999988632210 0 0 000 0124567789999999999999999999999999
Q ss_pred EEEEECCCceeEEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC-------cccCeEEEEEc
Q 038577 288 FGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG-------HYFDVNCLAYS 358 (860)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~s 358 (860)
++.|+...... .++.... +-..++.+......+.+++...+.-.+++.+.......+.. ....+..+.++
T Consensus 420 vr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~ 498 (577)
T KOG0642|consen 420 VRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH 498 (577)
T ss_pred EEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec
Confidence 99999865554 3333222 23344444443333333333224444444444444433321 12346778899
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577 359 PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF 429 (860)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 429 (860)
|.+.+.+++..|+.|+++|..++..+.....|...++++++.|+|.+|++++.|+.+++|.+....+....
T Consensus 499 ~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 499 PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred CCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999998665554433
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=1.1e-16 Score=143.92 Aligned_cols=279 Identities=15% Similarity=0.245 Sum_probs=202.3
Q ss_pred CCceEEEEecC---CCCEEEEEEcC----CeEEEEECC--CceeEEEE-eecCceeEEEEEeeCCC----EEEEEEccCC
Q 038577 264 PSKVTACDYHR---GLDMVVVGFSN----GVFGLYQMP--DFVCIHLL-SISREKITTAVFNELGN----WLVFGCAKLG 329 (860)
Q Consensus 264 ~~~v~~~~~~~---~~~~l~~~~~~----g~i~~~~~~--~~~~~~~~-~~~~~~i~~~~~s~~~~----~l~~~~~~~g 329 (860)
.-.+.++.|+. ...++++|+.. +.|.+..+. +++.+..- -.+..+++.+.|.|+.. .++++++ .
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--D 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--C
Confidence 34577777773 23467877753 666666554 33333222 23556899999999873 2333333 5
Q ss_pred cEEEEEccCceEEEE---------ecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCCe---eEEEeecCCCceEE
Q 038577 330 QLLVWEWRSESYILK---------QQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSGF---CFVTFTEHTNAVTA 396 (860)
Q Consensus 330 ~i~v~d~~~~~~~~~---------~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~ 396 (860)
.+++|.+........ -..+..+++++.|+. +-+++.+.+-|.+..|||++++. ....+..|...|..
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYD 201 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeE
Confidence 899999874221111 123567899999987 56688889999999999999863 35677889999999
Q ss_pred EEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeC-CC-CCcEEEEEECCC-CCEEEEEecCCCeEEEEECCC-CceEE
Q 038577 397 LHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTT-PS-SRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKT-GRLLD 471 (860)
Q Consensus 397 i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~-~~~~~ 471 (860)
++|..++ +.+++.|.||.+|+||++.......+.. +. ..+...+++++. -+++|+-..|+..|.+.|++. ..++.
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva 281 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA 281 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee
Confidence 9999866 6789999999999999998766554433 33 446677777764 467787777777999999985 56789
Q ss_pred EecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcc-----eeEEcccCCCeEEEEEee-CCCEEEEEeCCCeEE
Q 038577 472 ILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKG-----SVESFPHTHDVLTVVYRP-DGRQLACSTLDGQIH 544 (860)
Q Consensus 472 ~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~ 544 (860)
.+++|.+.|++++|.|. ...|++++.|..+.+||+..... ........++|..+.|++ .+.+++.+.. ..+.
T Consensus 282 ~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kkle 360 (364)
T KOG0290|consen 282 RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLE 360 (364)
T ss_pred hhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-Ceee
Confidence 99999999999999996 56799999999999999976432 111224678899999996 5667887764 3344
Q ss_pred E
Q 038577 545 F 545 (860)
Q Consensus 545 i 545 (860)
+
T Consensus 361 i 361 (364)
T KOG0290|consen 361 I 361 (364)
T ss_pred E
Confidence 3
No 197
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.1e-16 Score=158.19 Aligned_cols=417 Identities=15% Similarity=0.139 Sum_probs=280.5
Q ss_pred cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC------------CCeEEEe
Q 038577 92 FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD------------SNYLLVG 159 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------------~~~l~s~ 159 (860)
+...-.++.|+|.| +||.|....|.+-|..+.+ .+..+..|...|+.+.|.|- .-+||++
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q-------~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsa 85 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQ-------LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA 85 (1062)
T ss_pred CcccccccccCccc-eEEEecCceEEEEehhhhh-------hhhccccCccceeEEEeccCCCchhccCccccceeEEec
Confidence 34446788999876 8999999999999988776 57889999999999999872 1356777
Q ss_pred ecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCC
Q 038577 160 SKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEP 239 (860)
Q Consensus 160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~ 239 (860)
...|.|.+||.... .....+..|.+++..++|-+.... ....|+......++.+|+..+++.
T Consensus 86 D~~GrIil~d~~~~------s~~~~l~~~~~~~qdl~W~~~rd~-Srd~LlaIh~ss~lvLwntdtG~k----------- 147 (1062)
T KOG1912|consen 86 DISGRIILVDFVLA------SVINWLSHSNDSVQDLCWVPARDD-SRDVLLAIHGSSTLVLWNTDTGEK----------- 147 (1062)
T ss_pred cccCcEEEEEehhh------hhhhhhcCCCcchhheeeeeccCc-chheeEEecCCcEEEEEEccCCce-----------
Confidence 78899999999988 667788899999999999775431 112788888889999999998754
Q ss_pred CCCCCCcceeeeEEeeeeccccCCCCceEEEEecC-CCCEEEEEEcCCeEEEEECCC-------ceeEEEEeecCc----
Q 038577 240 PSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR-GLDMVVVGFSNGVFGLYQMPD-------FVCIHLLSISRE---- 307 (860)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~g~i~~~~~~~-------~~~~~~~~~~~~---- 307 (860)
.|+... ......|+.+.| |.+.+.+-+..|.+.+.+.-. ++..+.-..+.+
T Consensus 148 -----------~Wk~~y------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~l 210 (1062)
T KOG1912|consen 148 -----------FWKYDY------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHL 210 (1062)
T ss_pred -----------eecccc------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhh
Confidence 664432 233566788888 445666777777777665421 222222111111
Q ss_pred ---------------------eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC--CEE
Q 038577 308 ---------------------KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS--QLL 364 (860)
Q Consensus 308 ---------------------~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l 364 (860)
-....+|+|.-+.+++.... ..+.++|++-...+....-..+.+.-+.+-|++ ..|
T Consensus 211 ere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p-rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 211 ERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP-RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred hhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec-cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceE
Confidence 01235677877777776666 889999999888887776666666677777765 478
Q ss_pred EEEeCCCcEEEEECCCC----------------eeEEEeec-CCCceEEEEEeeC-CCEEEEEeCCCcEEEEEcccccee
Q 038577 365 ATGADDNKVKVWTVSSG----------------FCFVTFTE-HTNAVTALHFMAN-NHSLLSASLDGTVRAWDLFRYRNF 426 (860)
Q Consensus 365 ~~~~~dg~i~iwd~~~~----------------~~~~~~~~-~~~~v~~i~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~ 426 (860)
++...||.+.+|--... .....+.. .+-.+.....+|. ...++.--.+|.+.+|.+.+++..
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 88999999999975431 11111110 1111222223343 223333345677778877654321
Q ss_pred eEeeC------------------------------CCCCcEE-----------EEEECCCCC-------EEEEEecCCCe
Q 038577 427 RTFTT------------------------------PSSRQFV-----------SLASDQSGE-------VICAGTLDSFE 458 (860)
Q Consensus 427 ~~~~~------------------------------~~~~~~~-----------~~~~~~~~~-------~l~~~~~~~~~ 458 (860)
..... .+..... -..-.|.|+ ++|+|+..| +
T Consensus 370 ~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sG-T 448 (1062)
T KOG1912|consen 370 LDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSG-T 448 (1062)
T ss_pred cccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCc-e
Confidence 11100 0011111 111223232 466777777 9
Q ss_pred EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE---------eCCCcEEEEEccCCcceeEE---cccCCCeEEEE
Q 038577 459 IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASS---------SWDKTVRLWNVFEGKGSVES---FPHTHDVLTVV 526 (860)
Q Consensus 459 i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~---------~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~ 526 (860)
|.++|+.++..-+.+..|.+.|.++.|-.+.+++-.+ +.-+.+.+-|+++|...... .....+|+.+.
T Consensus 449 V~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~ir 528 (1062)
T KOG1912|consen 449 VDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIR 528 (1062)
T ss_pred EEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeee
Confidence 9999999999999999999999999997665543322 22345778899988633221 24678899999
Q ss_pred EeeCCCEEEEEeCCCeEEEEeCCCCce
Q 038577 527 YRPDGRQLACSTLDGQIHFWDPLNGEL 553 (860)
Q Consensus 527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~ 553 (860)
.|..|+||+..-.+.-+.+||+++..+
T Consensus 529 vS~~~~yLai~Fr~~plEiwd~kt~~~ 555 (1062)
T KOG1912|consen 529 VSSSGRYLAILFRREPLEIWDLKTLRM 555 (1062)
T ss_pred ecccCceEEEEecccchHHHhhccchH
Confidence 999999999999999999999977543
No 198
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=1e-18 Score=178.87 Aligned_cols=285 Identities=15% Similarity=0.173 Sum_probs=226.2
Q ss_pred eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCC
Q 038577 46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPG 123 (860)
Q Consensus 46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~ 123 (860)
..+.||...|.|++|...|.++++++.|.-++||..+++.++...+ |.+.|+.++.+.+..++|++ .|..|++|.+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 3456999999999999999999999999999999999999999988 99999999999999999998 788999999999
Q ss_pred CCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeec-CCCcEEEEEEccCCC
Q 038577 124 FKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG-HRDSVVGCFFSVDKK 202 (860)
Q Consensus 124 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~~~~~ 202 (860)
+. ++..+.+|++.|++++|+|-. +.+.||++++||..-.... ..+..+.. ...-+.++.|..++.
T Consensus 264 ~~-------pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~---y~prp~~~~~~~~~~s~~~~~~~~ 329 (1113)
T KOG0644|consen 264 GA-------PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRI---YVPRPLKFTEKDLVDSILFENNGD 329 (1113)
T ss_pred Cc-------hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccc---cCCCCCCcccccceeeeecccccc
Confidence 88 478899999999999999953 7789999999999832111 11111211 234566777877887
Q ss_pred CCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCC-CEEEE
Q 038577 203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL-DMVVV 281 (860)
Q Consensus 203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 281 (860)
.+.+++.|+.-..|...--.. . ...+.-+..+.+. .+.++
T Consensus 330 -----~f~Tgs~d~ea~n~e~~~l~~------------------------~----------~~~lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 330 -----RFLTGSRDGEARNHEFEQLAW------------------------R----------SNLLIFVTRSSDLSSIVVT 370 (1113)
T ss_pred -----ccccccCCcccccchhhHhhh------------------------h----------ccceEEEecccccccccee
Confidence 899999999888886653211 1 1111111122122 34455
Q ss_pred EEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577 282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS 361 (860)
Q Consensus 282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 361 (860)
.-.+-.+.+|++.++...+.+.++.+.+..+.++|-...++.....||...|||+-.+..+.........+..-+||++|
T Consensus 371 ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdg 450 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDG 450 (1113)
T ss_pred eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCC
Confidence 66667889999999999999999999999999999999998888888999999999887776664335567778999999
Q ss_pred CEEEEEeCCCcEEEEECCCCee
Q 038577 362 QLLATGADDNKVKVWTVSSGFC 383 (860)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~ 383 (860)
..++....-|.++|.....++.
T Consensus 451 ts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 451 TSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred ceEecCCCCCceEEeccCCCcc
Confidence 9999988889999987655443
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=4.4e-17 Score=172.89 Aligned_cols=233 Identities=19% Similarity=0.194 Sum_probs=167.7
Q ss_pred CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEE
Q 038577 32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI 108 (860)
Q Consensus 32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~l 108 (860)
..|.+||........ +..|...+.+++|||||+.||+++.+ ..|++||+.+++........+...+++|+|||+.|
T Consensus 184 ~~i~i~d~dg~~~~~-lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~L 262 (429)
T PRK01742 184 YEVRVADYDGFNQFI-VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEEECCCCCCceE-eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEE
Confidence 479999987766544 44788889999999999999987653 47999999988654433344556689999999999
Q ss_pred EEE--eCCe--EEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-cCCeEEEEeecccccCcccccce
Q 038577 109 AVG--TGKL--VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-KDLAVRLFYVKEKLKGIHTNKPF 183 (860)
Q Consensus 109 a~~--~~~~--i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~v~vwd~~~~~~~~~~~~~~ 183 (860)
+++ .++. |++||+.++. ...+..+...+....|+|||+.|+.++ .++...||+++.. .. ...
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~-~~----~~~ 329 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT--------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS-GG----GAS 329 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC--------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC-CC----CeE
Confidence 887 3565 4455666654 355667777889999999999877665 5788999988754 11 112
Q ss_pred EeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC
Q 038577 184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA 263 (860)
Q Consensus 184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (860)
.+ .+.. ....|+||++ .|+..+.++ +..||+.++.. ..... .
T Consensus 330 ~l-~~~~--~~~~~SpDG~-----~ia~~~~~~-i~~~Dl~~g~~------------------------~~lt~----~- 371 (429)
T PRK01742 330 LV-GGRG--YSAQISADGK-----TLVMINGDN-VVKQDLTSGST------------------------EVLSS----T- 371 (429)
T ss_pred Ee-cCCC--CCccCCCCCC-----EEEEEcCCC-EEEEECCCCCe------------------------EEecC----C-
Confidence 22 3443 4578999999 888887765 55588876532 11100 0
Q ss_pred CCceEEEEecCCCCEEEEEEcCCeEEEEEC--CCceeEEEEeecCceeEEEEEeeC
Q 038577 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQM--PDFVCIHLLSISREKITTAVFNEL 317 (860)
Q Consensus 264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~ 317 (860)
.....+.|+|+|++++.++.+|...+|.+ .++...+.+..+.+.+...+|+|-
T Consensus 372 -~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 372 -FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred -CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 11245779999999999999988887765 367778888777777888888874
No 200
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.5e-17 Score=151.79 Aligned_cols=283 Identities=15% Similarity=0.143 Sum_probs=198.3
Q ss_pred EEEee-eCCeEEEEECCCCcEEeeccCCccCeeEEEEcC--CCCEEEEEcCCCcEEEEEcccCeEEEEee---c-CCcee
Q 038577 25 KLISP-VGNRVSVTDLIKSKTVTLPVESSSNICRIAVSP--DGTFLLTVDENQRCHFINLHCHVVLHRVR---F-KYPVN 97 (860)
Q Consensus 25 ~l~~~-~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~sp--dg~~la~~~~d~~i~vwd~~~~~~~~~~~---~-~~~v~ 97 (860)
.+|++ +.|.|++||..+++.+..+.++...+..++|.. ....+.+++.||+|++||+.+......+. + ..+-.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 45554 568999999999999888889999999999986 45678899999999999999877766665 2 24677
Q ss_pred EEEECCCCCEEEEE-----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeec
Q 038577 98 AILFSPNGKYIAVG-----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVK 171 (860)
Q Consensus 98 ~~~fspdg~~la~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~ 171 (860)
+++....+..+++| .+-.+.+||+...++. +..-...|.+.|++++|.|.. +.|++|+.||-|.++|+.
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-----l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-----LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccch-----hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 78877788999998 5679999999987642 223456899999999999965 799999999999999998
Q ss_pred ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeee
Q 038577 172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK 251 (860)
Q Consensus 172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (860)
...+. ......-.|...|..+.|..++.. +|.+.+..++..+|+++.+.+......+..... ...+.
T Consensus 197 ~d~Ee---DaL~~viN~~sSI~~igw~~~~yk----rI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~------d~r~~ 263 (376)
T KOG1188|consen 197 KDNEE---DALLHVINHGSSIHLIGWLSKKYK----RIMCLTHMETFAIYELEDGSEETWLENPDVSAD------DLRKE 263 (376)
T ss_pred CCcch---hhHHHhhcccceeeeeeeecCCcc----eEEEEEccCceeEEEccCCChhhcccCccchhh------hHHhh
Confidence 76322 334455568888999999888743 799999999999999998764222211110000 00001
Q ss_pred EEeeeeccccCCCCceEEEEecCCCCEEEEEEc-CCeEEEEECC---C---ceeEEEEee-cCceeEEEEEeeCCCEEEE
Q 038577 252 WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS-NGVFGLYQMP---D---FVCIHLLSI-SREKITTAVFNELGNWLVF 323 (860)
Q Consensus 252 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~g~i~~~~~~---~---~~~~~~~~~-~~~~i~~~~~s~~~~~l~~ 323 (860)
| ....+.......+....++++. .|...++-+. + .+.+..+.+ +..-|+++.|...+..+.+
T Consensus 264 ~----------~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 264 D----------NCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred h----------hhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeec
Confidence 1 1111222222234445554444 4544444332 2 233444555 4556788888877777777
Q ss_pred EEccCCcEEEEEc
Q 038577 324 GCAKLGQLLVWEW 336 (860)
Q Consensus 324 ~~~~~g~i~v~d~ 336 (860)
++.+ |.+.+|..
T Consensus 334 GGED-G~l~~Wk~ 345 (376)
T KOG1188|consen 334 GGED-GLLQAWKV 345 (376)
T ss_pred cCCC-ceEEEEec
Confidence 7655 99999985
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=149.62 Aligned_cols=296 Identities=12% Similarity=0.096 Sum_probs=214.4
Q ss_pred eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEccc------CeEEEEee--cCCceeEEEECCCCCEEEEE-eCCeE
Q 038577 46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHC------HVVLHRVR--FKYPVNAILFSPNGKYIAVG-TGKLV 116 (860)
Q Consensus 46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~------~~~~~~~~--~~~~v~~~~fspdg~~la~~-~~~~i 116 (860)
+-+.+|.+.|.++.||.++++||+|+.|..+.+|+++. .+++.... |...|.|++|.-..+++.+| .+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34458999999999999999999999999999999863 34444444 67899999999999999998 88999
Q ss_pred EEEeCCCCCcccceeEEEEEe--eccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEE
Q 038577 117 QIWRSPGFKKEVFAFELIRTL--ADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVG 194 (860)
Q Consensus 117 ~iwd~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~ 194 (860)
...|+++.+. +..+ ....+.|..+..+|-.+.|++.+.++.|.+||....... ..+..+.........
T Consensus 130 I~HDiEt~qs-------i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~---~~~~~~AN~~~~F~t 199 (609)
T KOG4227|consen 130 IKHDIETKQS-------IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP---ISLVLPANSGKNFYT 199 (609)
T ss_pred Eeeeccccee-------eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC---CceeeecCCCcccee
Confidence 9999998763 2222 223458999999999999999999999999999876222 234445555667788
Q ss_pred EEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecC
Q 038577 195 CFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHR 274 (860)
Q Consensus 195 ~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 274 (860)
+.|.|.... +|++.+..+-+-+||........ +....-..++.....-....|+|
T Consensus 200 ~~F~P~~P~----Li~~~~~~~G~~~~D~R~~~~~~---------------------~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 200 AEFHPETPA----LILVNSETGGPNVFDRRMQARPV---------------------YQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred eeecCCCce----eEEeccccCCCCceeeccccchH---------------------HhhhccccCcccchhhhheeeCC
Confidence 899997763 77888888999999987643210 00000111112222335678999
Q ss_pred CCCEEEEEEcCCeEEEEECCCceeEEEEeec-------CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--------
Q 038577 275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS-------REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE-------- 339 (860)
Q Consensus 275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~-------- 339 (860)
.|+.+.+--....-.+||+.+..+...-..| ...+.+++|..|-. +.+++++=.|++|.+...
T Consensus 255 ~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~--v~tGSD~~~i~~WklP~~~ds~G~~~ 332 (609)
T KOG4227|consen 255 SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT--VATGSDHWGIHIWKLPRANDSYGFTQ 332 (609)
T ss_pred CCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee--eeccCcccceEEEecCCCccccCccc
Confidence 9998887666666667777654433222221 12466777775544 445556688999987421
Q ss_pred ---------------eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577 340 ---------------SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV 378 (860)
Q Consensus 340 ---------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 378 (860)
.....+++|..-+..+.|+|....|++.+-.+.+++|..
T Consensus 333 IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 333 IGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 123446899999999999999999999999999999974
No 202
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.7e-16 Score=136.85 Aligned_cols=231 Identities=21% Similarity=0.279 Sum_probs=176.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 351 DVNCLAYSPDSQLLATGADDNKVKVWTVSS----------GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 351 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
.|.+-+++|.+++|++|..+|.|.++.+.+ ...+...++|.+++..++|..+ +|++++ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeecc-CceEEEeee
Confidence 355668999999999999999999998753 2345566899999999999833 666665 599999987
Q ss_pred cccce------eeEee------CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCC
Q 038577 421 FRYRN------FRTFT------TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPT 488 (860)
Q Consensus 421 ~~~~~------~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~ 488 (860)
+.... ..... ...-..+.++.+.|..+-++.++.|+ .++-||+++|+..++++||...|.++.--..
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~-~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDG-VIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCe-EEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 54321 11111 11234688999999888888877888 9999999999999999999999999998666
Q ss_pred CCEEEEEeCCCcEEEEEccCCcceeEEcc---------c-CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577 489 NATLASSSWDKTVRLWNVFEGKGSVESFP---------H-THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 558 (860)
...+.+|++||++|+||.++++....+.. | ...|.+++- +..+|++|+ .-.+.+|.+++.++...++
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence 67899999999999999999986554432 1 122444444 556887776 4569999999999888887
Q ss_pred cccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
-... +..+.|. .+.+++++..+.|.-|-+.
T Consensus 245 ipa~---------------------v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 IPAR---------------------VHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred cccc---------------------eeEeeee--cceEEEeccccceeeeeec
Confidence 6543 7788884 4568888888888888764
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=7.1e-17 Score=153.66 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=157.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEee-C
Q 038577 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFT-T 431 (860)
Q Consensus 353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~ 431 (860)
.+++|+++|..+++|+.||++|+|+..+...+.....|...|.++.|+|||+.|++.+.| ..++|+..++..+.... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988888888888999999999999999999999999 99999999997666655 3
Q ss_pred CCCCcEEEEEECCCC---C-EEEEEecCCCeEEEEECCCCce-----EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038577 432 PSSRQFVSLASDQSG---E-VICAGTLDSFEIFVWSMKTGRL-----LDILSGHEGPVHGLVFSPTNATLASSSWDKTVR 502 (860)
Q Consensus 432 ~~~~~~~~~~~~~~~---~-~l~~~~~~~~~i~v~d~~~~~~-----~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~ 502 (860)
.....+..+.|+.++ . ++++....++.|..|++...+- ..........|++++.+++|+++|.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 334445667777666 2 3444444444677776653322 111112345799999999999999999999999
Q ss_pred EEEccCCcceeEEc-ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577 503 LWNVFEGKGSVESF-PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL 549 (860)
Q Consensus 503 iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 549 (860)
|++..+-+...... .|..-|+.+.|+||.+++++.+.+....+..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99998887555444 599999999999999999999999888887764
No 204
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=5.7e-16 Score=161.61 Aligned_cols=282 Identities=12% Similarity=0.072 Sum_probs=208.2
Q ss_pred CcEEEEEcccC-eEEEEeecCCceeEEEECCCC-CEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577 74 QRCHFINLHCH-VVLHRVRFKYPVNAILFSPNG-KYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS 150 (860)
Q Consensus 74 ~~i~vwd~~~~-~~~~~~~~~~~v~~~~fspdg-~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 150 (860)
+.+.||+++.. ..-..+....+|.++.|+|.. .++|.| .+|.|.+||+..+.... +..+......|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEe
Confidence 47999999876 555566678999999999955 555656 88999999999876421 222334456789999999997
Q ss_pred CCCC--eEEEeecCCeEEEEeecccccCcccccceEee------cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEee
Q 038577 151 PDSN--YLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLL------GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG 222 (860)
Q Consensus 151 ~d~~--~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~------~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~ 222 (860)
.+.. -+++++.||.|..|+++.-............. .....++++.|.+.... .++.|+++|.|..-+
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~----~FiVGTe~G~v~~~~ 376 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN----HFIVGTEEGKVYKGC 376 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc----eEEEEcCCcEEEEEe
Confidence 7554 49999999999999887652211111111111 22346788999876654 899999999988754
Q ss_pred ecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC-CceeEEE
Q 038577 223 FSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP-DFVCIHL 301 (860)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~-~~~~~~~ 301 (860)
..+...... -.......+..|.+.|.++.++|-+..++....|..+++|... ...++..
T Consensus 377 r~g~~~~~~--------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~ 436 (555)
T KOG1587|consen 377 RKGYTPAPE--------------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS 436 (555)
T ss_pred ccCCccccc--------------------ccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh
Confidence 443222000 0001123456688999999999999887777779999999987 6667777
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc--eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE--SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS 379 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 379 (860)
+..+...+++++|||....++++...+|.+.+||+... ..+.....+....+.+.|+++|+.+++|...|.+.+|++.
T Consensus 437 ~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 437 LDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 77777789999999999999999888899999998654 3344444445667788899999999999999999999986
Q ss_pred C
Q 038577 380 S 380 (860)
Q Consensus 380 ~ 380 (860)
.
T Consensus 517 ~ 517 (555)
T KOG1587|consen 517 E 517 (555)
T ss_pred c
Confidence 3
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.76 E-value=1.8e-16 Score=165.27 Aligned_cols=264 Identities=22% Similarity=0.295 Sum_probs=191.9
Q ss_pred CcEEEEEccCceEEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEECCCCee--EE----EeecCCCceEEEEEee
Q 038577 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPD-SQLLATGADDNKVKVWTVSSGFC--FV----TFTEHTNAVTALHFMA 401 (860)
Q Consensus 329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~i~~~~ 401 (860)
+.+.+|+++..............|+|+.|+|. ..+++.|..+|.|.+||+..+.. .. ....|..+++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47899999887333333345678999999995 56777888899999999987654 22 2235889999999976
Q ss_pred CCC--EEEEEeCCCcEEEEEccccceeeEe-----------eCCCCCcEEEEEECCCCC-EEEEEecCCCeEEEEECCCC
Q 038577 402 NNH--SLLSASLDGTVRAWDLFRYRNFRTF-----------TTPSSRQFVSLASDQSGE-VICAGTLDSFEIFVWSMKTG 467 (860)
Q Consensus 402 ~~~--~l~s~~~dg~i~~wd~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~v~d~~~~ 467 (860)
+.. -+++++.||.|..|+++........ .......++++.|.+... .+++|+..| .|+.-+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G-~v~~~~r~g~ 380 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEG-KVYKGCRKGY 380 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCc-EEEEEeccCC
Confidence 544 4999999999999988654331111 112234578888887554 455666666 7777443322
Q ss_pred c--------eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc-CCcceeEEcccCCCeEEEEEeeCC-CEEEEE
Q 038577 468 R--------LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF-EGKGSVESFPHTHDVLTVVYRPDG-RQLACS 537 (860)
Q Consensus 468 ~--------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~ 537 (860)
+ ....+..|.++|..+.++|=+..++..+.|.+++||.-. ...++..+..+...+++++|||-. ..++++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 2 233556789999999999977665555559999999987 555566666777889999999954 477888
Q ss_pred eCCCeEEEEeCCCCc--eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 538 TLDGQIHFWDPLNGE--LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 538 ~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
..||.|.+||+.... ++.+.+... ...+.+.|+++|+.|++|+..|.+.+|++...
T Consensus 461 d~~G~l~iWDLl~~~~~Pv~s~~~~~--------------------~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDEEPVLSQKVCS--------------------PALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cCCCceehhhhhccccCCcccccccc--------------------cccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 889999999986543 333333222 24688889999999999999999999999764
No 206
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.1e-15 Score=142.00 Aligned_cols=304 Identities=15% Similarity=0.244 Sum_probs=202.2
Q ss_pred CceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEe-ecCceeEEEEEeeCCC-EEEEEEccCCcEEEEEccCce--
Q 038577 265 SKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLS-ISREKITTAVFNELGN-WLVFGCAKLGQLLVWEWRSES-- 340 (860)
Q Consensus 265 ~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~-~~~~~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~~~~~-- 340 (860)
..+..++|++.-..++++..|..|++|+-.+ ++...++ ..+..+++++|.|.+. .+++++. +.|.+|......
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr--~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR--AGICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec--ceeEEEEcCccccc
Confidence 4578899999888899999999999999877 4444443 4556899999999764 4555554 789999764321
Q ss_pred ------------EEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577 341 ------------YILKQQGHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL 407 (860)
Q Consensus 341 ------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 407 (860)
.+.+..+| .+|+++.|.+||..+++++- |..|.|||..++..+.......+.++-+.|+||+.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 12223455 67999999999999999876 67899999999887766655677889999999999999
Q ss_pred EEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 038577 408 SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487 (860)
Q Consensus 408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~ 487 (860)
++..|+..++|................ .+...+++|+|++|+.+.... -. +.++.|..
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgs--p~-------------------lysl~f~~ 312 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGS--PR-------------------LYSLTFDG 312 (445)
T ss_pred EecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCC--ce-------------------EEEEeecC
Confidence 999999999996544332222222222 889999999999998877653 22 23333332
Q ss_pred CCCEEE-EEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCC--------eEEEEeCCCCceeEEEe
Q 038577 488 TNATLA-SSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG--------QIHFWDPLNGELMYTIE 558 (860)
Q Consensus 488 ~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~ 558 (860)
....+- .++.....-+-|+..-.......--.+++.+++|.|.|.+||+.-..+ .|.+||....-.+.-..
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~ 392 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY 392 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe
Confidence 211111 222222233334432211111112357789999999999999986543 36777765443333221
Q ss_pred cccccCCCccccccccccccCCCCcEEEEEEec---CCCEEEEecCCCeEEEEECC
Q 038577 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA---DGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~---~g~~l~~~~~dg~v~vwd~~ 611 (860)
.... .+.+...++|+| +|.+|..+=+.|.+.-|++.
T Consensus 393 cg~i-----------------~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 393 CGMI-----------------GGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccc-----------------cCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1100 011245566665 56777777788888888764
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=5.8e-15 Score=135.21 Aligned_cols=237 Identities=14% Similarity=0.250 Sum_probs=177.5
Q ss_pred eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccC--eEEEEEcCCCCEEEE-EeCC------CcEEEEEC
Q 038577 308 KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD--VNCLAYSPDSQLLAT-GADD------NKVKVWTV 378 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~-~~~d------g~i~iwd~ 378 (860)
...+++|+.|...++++.. .-.+||+.+.-+.....+.+.+. +..+-| ..++++. |+.+ +.+.|||-
T Consensus 7 ~~lsvs~NQD~ScFava~~--~Gfriyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATD--TGFRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEec--CceEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 4455899999998888765 56889988764332222222222 112222 2234443 3332 47999997
Q ss_pred CCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc-ccceeeEeeCCC-CCcEEEEEECCCCCEEEEEecCC
Q 038577 379 SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF-RYRNFRTFTTPS-SRQFVSLASDQSGEVICAGTLDS 456 (860)
Q Consensus 379 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 456 (860)
...+++.++. ...+|.++.+.++ .+++.- ++.|.+|.+. +.+.++.+.... +....+++...+..+||.-+...
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 7777777775 6789999999877 455553 5689999998 556666665443 44566666666777888777776
Q ss_pred CeEEEEECCCCce--EEEecCcccCeEEEEEcCCCCEEEEEeCCCc-EEEEEccCCcceeEEcc--cCCCeEEEEEeeCC
Q 038577 457 FEIFVWSMKTGRL--LDILSGHEGPVHGLVFSPTNATLASSSWDKT-VRLWNVFEGKGSVESFP--HTHDVLTVVYRPDG 531 (860)
Q Consensus 457 ~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~ 531 (860)
|.|++-|+...+. ...+.+|.+.|.|++.+-+|..+||+|..|+ |||||..+++.+.++.. ....|.+++|||++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 7999999987665 4778899999999999999999999999997 89999999998888774 56679999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCc
Q 038577 532 RQLACSTLDGQIHFWDPLNGE 552 (860)
Q Consensus 532 ~~l~~~~~dg~i~iwd~~~~~ 552 (860)
.+||++++.|+++||.+....
T Consensus 239 s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999987643
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.75 E-value=1.5e-15 Score=162.79 Aligned_cols=277 Identities=18% Similarity=0.195 Sum_probs=192.3
Q ss_pred CceEEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577 338 SESYILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANNHSLLSA 409 (860)
Q Consensus 338 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 409 (860)
.|..+..+..|...+..++.++.. .++++|+.||+|++|+... .+...++....+.+.++.+.+.+..++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 356667777888888888887765 9999999999999999863 12333444457889999999999999999
Q ss_pred eCCCcEEEEEccccc-------eeeEeeCCCCCcEEEEE-ECC-CCC-EEEEEecCCCeEEEEECCCCceEEEec--Ccc
Q 038577 410 SLDGTVRAWDLFRYR-------NFRTFTTPSSRQFVSLA-SDQ-SGE-VICAGTLDSFEIFVWSMKTGRLLDILS--GHE 477 (860)
Q Consensus 410 ~~dg~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~-~~~-~~~-~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~ 477 (860)
+.||.|++.++.... +.+.......+.+..+. +.. .+. .++.+...+ .|..||++.......++ ...
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~-~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLS-RIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEecc-ceEEecchhhhhHHhhhcCccc
Confidence 999999999987521 11222222333344332 222 233 566666666 89999999776554443 346
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeC---CCEEEEEe--CCCeEEEEeCCCC
Q 038577 478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPD---GRQLACST--LDGQIHFWDPLNG 551 (860)
Q Consensus 478 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~---~~~l~~~~--~dg~i~iwd~~~~ 551 (860)
|.|++++.+|.+.+++.|+..|.+-+||++-+..+.... ++..+++.+...|- ....++++ ..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 889999999999999999999999999998887655544 56678888888773 34555554 4677999999999
Q ss_pred ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEE
Q 038577 552 ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLL 616 (860)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~ 616 (860)
....++....+...-....... .......-+....++...+.++.+|+.|..|+.||....+..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~-~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSN-DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccc-cCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 8877776652221111100000 000122223344455556779999999999999999876544
No 209
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2e-16 Score=154.67 Aligned_cols=244 Identities=12% Similarity=0.100 Sum_probs=167.6
Q ss_pred EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCceeEEEECC--CCCEEEEE-eCCeEEEE
Q 038577 45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYPVNAILFSP--NGKYIAVG-TGKLVQIW 119 (860)
Q Consensus 45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~fsp--dg~~la~~-~~~~i~iw 119 (860)
...+.||.+.|.|++|+.||.+||+|+.|-++.|||.-..+.++.+. |...|-++.|-| +.+++++| +|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34567999999999999999999999999999999999999999887 999999999999 45777777 89999999
Q ss_pred eCCCCCc---ccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccc-c---ceEeecCCCc
Q 038577 120 RSPGFKK---EVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTN-K---PFLLLGHRDS 191 (860)
Q Consensus 120 d~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~-~---~~~~~~h~~~ 191 (860)
|+...+. .-......+.+..|...|..++-.|++ ..+.++++||+++-+|+.....+.+.. . ...+.+..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9985221 111222345667899999999999999 788899999999999998752221111 1 1111122234
Q ss_pred EEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee----ccccCCCCce
Q 038577 192 VVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK----DDFSQAPSKV 267 (860)
Q Consensus 192 i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v 267 (860)
..++.++|.... +|++|+.|-..++||...........-... +.+......++.+..... .........+
T Consensus 203 lk~ltisp~rp~----~laVGgsdpfarLYD~Rr~lks~~s~~~~~--~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~ 276 (758)
T KOG1310|consen 203 LKCLTISPSRPY----YLAVGGSDPFARLYDRRRVLKSFRSDGTMN--TCPPKDCRCVRYFSPGHLKNSQGNLDRYITCC 276 (758)
T ss_pred eeeeeecCCCCc----eEEecCCCchhhhhhhhhhccCCCCCcccc--CCCCcccchhheecCccccCcccccccceeee
Confidence 567888887764 899999999999999643221111000000 000101111111111100 0011111235
Q ss_pred EEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577 268 TACDYHRGLDMVVVGFSNGVFGLYQMP 294 (860)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~ 294 (860)
+-+.|+|+|.-|++.-..-.|+++|+.
T Consensus 277 t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 277 TYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred EEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 677899999999998888899999875
No 210
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=5e-18 Score=173.89 Aligned_cols=285 Identities=18% Similarity=0.303 Sum_probs=225.3
Q ss_pred eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW 336 (860)
Q Consensus 257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~ 336 (860)
...+.+|...|.|+.|...|.++++|+.|..++||.+.+..++...++|.+.|+.++.+.....+++++.+ ..|++|.+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D-~vIrvWrl 261 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASND-KVIRVWRL 261 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccC-ceEEEEec
Confidence 35567898999999999999999999999999999999999999999999999999999888777777655 89999999
Q ss_pred cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE---ee-cCCCceEEEEEeeCCCEEEEEeCC
Q 038577 337 RSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT---FT-EHTNAVTALHFMANNHSLLSASLD 412 (860)
Q Consensus 337 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~-~~~~~v~~i~~~~~~~~l~s~~~d 412 (860)
..+..+..+.+|.+.|++++|+|-. +.+.||++++||.+-...+.. .. ....-+.++.|...+..+++++.|
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD 337 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence 9999999999999999999999965 678899999999871111111 01 123456677788888899999999
Q ss_pred CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC-EEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 038577 413 GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE-VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT 491 (860)
Q Consensus 413 g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 491 (860)
+.-..|.+....... ..+.-+..+.+-. +.+++-.+- .+.+|++.+|.+.+.+.+|...+..+.++|-+..
T Consensus 338 ~ea~n~e~~~l~~~~-------~~lif~t~ssd~~~~~~~ar~~~-~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWRS-------NLLIFVTRSSDLSSIVVTARNDH-RLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred cccccchhhHhhhhc-------cceEEEeccccccccceeeeeee-EeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 998888764321110 0111111111222 233333333 8999999999999999999999999999996655
Q ss_pred -EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577 492 -LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM 554 (860)
Q Consensus 492 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 554 (860)
..+++.||...|||+-.+.++.........+..-.||+||..++....-|.++|.....++..
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccc
Confidence 558999999999999988877666555677888899999999999988899999987665443
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=4.3e-16 Score=166.99 Aligned_cols=345 Identities=16% Similarity=0.206 Sum_probs=218.6
Q ss_pred EEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccC-cccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577 133 LIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKG-IHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 133 ~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
++..+..|...+..++.+++. .++++|+.||+|++|+....... ...+...++......+..+.+.+.+. .++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~-----~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD-----QFA 1114 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC-----eEE
Confidence 578888999999999988766 99999999999999998765211 11123344444678889999999998 999
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC-CC-EEEEEEcCCeE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG-LD-MVVVGFSNGVF 288 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~-~l~~~~~~g~i 288 (860)
.++.||.|.+.+++....... .............+..+..-++... +. .++.++..+.|
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~-------------------~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKR-------------------VATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred EEcCCCeEEEEEccccccccc-------------------eeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence 999999999999886311000 0011111222222233333344332 23 68889999999
Q ss_pred EEEECCCceeEEEEe--ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCC---C
Q 038577 289 GLYQMPDFVCIHLLS--ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDS---Q 362 (860)
Q Consensus 289 ~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~---~ 362 (860)
..||+........++ ...+.|++++.+|-+.|+++|.+. |.+.+||++-+..+..+. ++..+++.+..+|-. .
T Consensus 1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~-G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSR-GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES 1254 (1431)
T ss_pred EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCC-ceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc
Confidence 999998766554443 345689999999999999999887 999999999988887763 355677777776632 3
Q ss_pred EEEEE-e-CCCcEEEEECCCCeeEEEeecCC-------------------CceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577 363 LLATG-A-DDNKVKVWTVSSGFCFVTFTEHT-------------------NAVTALHFMANNHSLLSASLDGTVRAWDLF 421 (860)
Q Consensus 363 ~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~-------------------~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 421 (860)
..+++ + ..+.|.+|++.+|.+...+.... -......+...+..+++|+.|..|+.||..
T Consensus 1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 44444 3 47889999999987766654320 111122233345678999999999999986
Q ss_pred ccceee-EeeCCCCCcEEEEEECCCCCEEEEEecCCCeE-EEEECC-----CCceEEE--------ecCcccCeEEEEEc
Q 038577 422 RYRNFR-TFTTPSSRQFVSLASDQSGEVICAGTLDSFEI-FVWSMK-----TGRLLDI--------LSGHEGPVHGLVFS 486 (860)
Q Consensus 422 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i-~v~d~~-----~~~~~~~--------~~~h~~~v~~l~~s 486 (860)
...... ....+.. .......+.+ ..++.++.-- .. ..+... .+..... -..|..+|+++++.
T Consensus 1335 ~p~~ss~~~~~~s~-~~~~~~~s~~-~~~i~~~~~i-~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~ 1411 (1431)
T KOG1240|consen 1335 RPEISSYAVPGPST-SYSTNSESYD-LSTIPGSQFI-DEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATL 1411 (1431)
T ss_pred CcccccccccCccc-cccccchhcc-ccccCCCccc-hhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhh
Confidence 654331 1111110 0111111110 0111111000 00 000000 0100111 12478899999887
Q ss_pred CC-CCEEEEEeCCCcEEEEE
Q 038577 487 PT-NATLASSSWDKTVRLWN 505 (860)
Q Consensus 487 ~~-~~~l~s~~~dg~i~iwd 505 (860)
.. ..+|++++.||.|++|.
T Consensus 1412 ~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1412 KSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCccEEEEecCCCeeeecC
Confidence 64 46899999999999993
No 212
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=1.1e-15 Score=143.69 Aligned_cols=239 Identities=14% Similarity=0.180 Sum_probs=180.2
Q ss_pred cceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF 260 (860)
Q Consensus 181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (860)
..-...||+++|..+.|+|-... .|++|++|.+|.+|++..+.. .
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~----vIASgSeD~~v~vW~IPe~~l-------------------------------~ 117 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDC----VIASGSEDTKVMVWQIPENGL-------------------------------T 117 (472)
T ss_pred CCCCccCccccccccccCccCCc----eeecCCCCceEEEEECCCccc-------------------------------c
Confidence 34567799999999999997654 899999999999998865321 0
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~ 340 (860)
..-.+.+..+.+|...|..++|+|....++.+++.|..|.+||+.+++
T Consensus 118 --------------------------------~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge 165 (472)
T KOG0303|consen 118 --------------------------------RDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE 165 (472)
T ss_pred --------------------------------cCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc
Confidence 001145666778888999999999887776666667999999999999
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCC-ceEEEEEeeCCCEEEEEe----CCCcE
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTN-AVTALHFMANNHSLLSAS----LDGTV 415 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~i~~~~~~~~l~s~~----~dg~i 415 (860)
.+..+. |...|.++.|+.||.++++.+.|..|+|||.++++.+..-.+|.+ ....+.|..++. +++.| .+..+
T Consensus 166 ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~ 243 (472)
T KOG0303|consen 166 ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQI 243 (472)
T ss_pred eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccce
Confidence 888877 999999999999999999999999999999999999998878876 345566778887 55444 46789
Q ss_pred EEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE-EEecC--cccCeEEEEEcCC
Q 038577 416 RAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL-DILSG--HEGPVHGLVFSPT 488 (860)
Q Consensus 416 ~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~--h~~~v~~l~~s~~ 488 (860)
.+||..+... +..........+.---+++|...++.++...+.|+.|.+....+. +-+.. ...+-..+.|-|.
T Consensus 244 aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 244 ALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred eccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 9999876443 222233444567777789999999887776669999998876532 22221 2334455556554
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.8e-13 Score=137.10 Aligned_cols=471 Identities=15% Similarity=0.206 Sum_probs=303.6
Q ss_pred cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCccc--------ceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC
Q 038577 92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEV--------FAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD 162 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~--------~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d 162 (860)
......|++|+.+..+||+| .+|.++|..+.+..... .....-+++.||.+.|.-+.|+...+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34567899999999999999 89999999887643221 2233456789999999999999999999999999
Q ss_pred CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCC
Q 038577 163 LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSP 242 (860)
Q Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 242 (860)
|-|.||-+-.+ .. .....-......|.+++|..||. .+...-.||.|.+=.++++
T Consensus 93 GlIiVWmlykg-sW---~EEMiNnRnKSvV~SmsWn~dG~-----kIcIvYeDGavIVGsvdGN---------------- 147 (1189)
T KOG2041|consen 93 GLIIVWMLYKG-SW---CEEMINNRNKSVVVSMSWNLDGT-----KICIVYEDGAVIVGSVDGN---------------- 147 (1189)
T ss_pred ceEEEEeeecc-cH---HHHHhhCcCccEEEEEEEcCCCc-----EEEEEEccCCEEEEeeccc----------------
Confidence 99999998776 22 22333344667889999999999 9999999999999988875
Q ss_pred CCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc-------eeEEE----EeecCceeEE
Q 038577 243 GTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF-------VCIHL----LSISREKITT 311 (860)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~-------~~~~~----~~~~~~~i~~ 311 (860)
+.|....+.. ....+.|++|.+.++.+-.+|.+.+||.... .+... +......+..
T Consensus 148 -------RIwgKeLkg~------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 148 -------RIWGKELKGQ------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred -------eecchhcchh------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 4564433221 2446889999999999999999999998531 11111 1112224555
Q ss_pred EEEe--------eCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC---------CcEE
Q 038577 312 AVFN--------ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD---------NKVK 374 (860)
Q Consensus 312 ~~~s--------~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~ 374 (860)
+.|. ||...++++..+ |.+.+..-.+......+. ....+....|+++|..|++++.+ +.|.
T Consensus 215 i~w~~g~~~~v~pdrP~lavcy~n-Gr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 215 IEWNTGPYQPVPPDRPRLAVCYAN-GRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred eeeccCccccCCCCCCEEEEEEcC-ceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 6654 466777777665 888777554433222221 22458889999999999998764 2566
Q ss_pred EEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577 375 VWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454 (860)
Q Consensus 375 iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (860)
+|. .-|..+.+++.....|++++|-..|-.++.+ .|+.|.+=+++-.-....+. ..+.+-..+.-+
T Consensus 293 Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e-------~TvVy~y~~~e~----- 358 (1189)
T KOG2041|consen 293 FYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIE-------ETVVYVYQKEEL----- 358 (1189)
T ss_pred Eec-cchhheEEEecCCceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEee-------eEEEEEEccCCC-----
Confidence 665 3478888898889999999998777666554 56788776664321110000 000000000000
Q ss_pred CCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC-CcceeEE-----cc--cCCCeE---
Q 038577 455 DSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE-GKGSVES-----FP--HTHDVL--- 523 (860)
Q Consensus 455 ~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~-----~~--~~~~v~--- 523 (860)
-...|.+||..+.+...... .+..+++++.+...|+.-..||.+.-++.-. ....... .+ ....++
T Consensus 359 p~y~i~Fwdtk~nek~vK~V---~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdir 435 (1189)
T KOG2041|consen 359 PQYGIMFWDTKTNEKTVKTV---THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIR 435 (1189)
T ss_pred cceEEEEEecccChhhhhhh---cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceee
Confidence 01168899988765432222 2345788887777788888888887664321 1111111 11 111222
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc-------ccc-----ccccCCCCcEEEEEEec
Q 038577 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD-------RRS-----AANSSSGKCFTTLCYSA 591 (860)
Q Consensus 524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~i~~l~~s~ 591 (860)
-.-..-++.+++.++.+ .+.+|.....+....+.+.+....++...+ ... ...-....+|.+++.|
T Consensus 436 P~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s- 513 (1189)
T KOG2041|consen 436 PKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS- 513 (1189)
T ss_pred eeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec-
Confidence 22222367778888766 488998766655444433111111111100 000 1112345678888874
Q ss_pred CCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577 592 DGSYILAGGSSKYICMYDVADQVLLRRFQIT 622 (860)
Q Consensus 592 ~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 622 (860)
.++|+++-.+|.|.-|.+.+..+..++...
T Consensus 514 -dk~l~vareSG~I~rySl~nv~l~n~y~~n 543 (1189)
T KOG2041|consen 514 -DKFLMVARESGGIYRYSLNNVVLTNSYPVN 543 (1189)
T ss_pred -ceEEEEEeccCceEEEEecceeeeeccccC
Confidence 678999999999999999999888766543
No 214
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.4e-15 Score=145.97 Aligned_cols=335 Identities=17% Similarity=0.189 Sum_probs=228.0
Q ss_pred CcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEE-----cC-----CCcEEEEEcccC
Q 038577 16 GNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTV-----DE-----NQRCHFINLHCH 84 (860)
Q Consensus 16 ~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~-----~~-----d~~i~vwd~~~~ 84 (860)
...++| +|+++|+..+..+.|++..++...... .- ..+.++.|||-|.+|.+- .. ...+.+|+++++
T Consensus 38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~-~~-~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~ 115 (566)
T KOG2315|consen 38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCV-EL-KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETG 115 (566)
T ss_pred eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEe-cc-ceeeeeeecccccccccccccccccCCCCCCCceeeeeeccc
Confidence 357788 999999999999999999999643332 12 288999999999999863 11 246789999997
Q ss_pred eEEEEee--cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC--CeEEE--
Q 038577 85 VVLHRVR--FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS--NYLLV-- 158 (860)
Q Consensus 85 ~~~~~~~--~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~--~~l~s-- 158 (860)
.....+. .+.. .+..|++|..+.|-...+.+.+|+..+.+. ..+ .-|...|+.+.+||.+ ..+|+
T Consensus 116 ~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~------~~~--kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 116 VQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKT------IQH--KLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred eehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccc------eee--eeeccceeeEEecCCCCCceEEEEc
Confidence 7666665 2222 589999999888777899999999987543 222 3367789999999974 34554
Q ss_pred ---eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---------ccEEEeeecCC
Q 038577 159 ---GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---------CYMFSWGFSGN 226 (860)
Q Consensus 159 ---~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---------g~i~~w~~~~~ 226 (860)
.|.-+.|+||........ .....-.-....-..+.|.+-|.. ...|++..-| .++++.++++.
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~---~~~a~ksFFkadkvqm~WN~~gt~--LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQH---QPVANKSFFKADKVQMKWNKLGTA--LLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred cCCCCCCcEEEEecccccccc---chhhhccccccceeEEEeccCCce--EEEEEEEeecCCCccccccceEEEEEecCc
Confidence 355678999988733100 111111112222334666666652 1122222223 24555555521
Q ss_pred CCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE--EEcCCeEEEEECCCceeEEEEee
Q 038577 227 DGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV--GFSNGVFGLYQMPDFVCIHLLSI 304 (860)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~~g~i~~~~~~~~~~~~~~~~ 304 (860)
. ...--...++|.++.|+|+++.+++ |..-..+.+||+ .+..+ +..
T Consensus 262 s-----------------------------~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v--~df 309 (566)
T KOG2315|consen 262 S-----------------------------VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPV--FDF 309 (566)
T ss_pred e-----------------------------EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEe--EeC
Confidence 1 1111234678999999999987664 566789999998 34444 344
Q ss_pred cCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC------CCcEEEE
Q 038577 305 SREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD------DNKVKVW 376 (860)
Q Consensus 305 ~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~iw 376 (860)
..++-..+-|+|.|+.+++++-. .|.+.+||..+.+.+..+.... -+-+.|+|||.+|+|++. |+.++||
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiw 387 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIW 387 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEE
Confidence 56778899999999999998865 3899999999988888776543 456899999999999875 6789999
Q ss_pred ECCCCeeEEEeecCCCceEEEEEeeC
Q 038577 377 TVSSGFCFVTFTEHTNAVTALHFMAN 402 (860)
Q Consensus 377 d~~~~~~~~~~~~~~~~v~~i~~~~~ 402 (860)
+.. |..+....- ......+.|-|-
T Consensus 388 hyt-G~~l~~~~f-~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 388 HYT-GSLLHEKMF-KSELLQVEWRPF 411 (566)
T ss_pred Eec-Cceeehhhh-hHhHhheeeeec
Confidence 974 555443221 115667777654
No 215
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.73 E-value=1.5e-12 Score=125.67 Aligned_cols=437 Identities=13% Similarity=0.114 Sum_probs=250.6
Q ss_pred CccCeeEEEEcCC--CCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE--------eCCeEEEEe
Q 038577 51 SSSNICRIAVSPD--GTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG--------TGKLVQIWR 120 (860)
Q Consensus 51 h~~~v~~va~spd--g~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~--------~~~~i~iwd 120 (860)
|.-.....-..|| |..+...+.| .+..+++.+|+..+...+-+-|+...|+|||+.+|.. ....+.+.+
T Consensus 35 h~~cM~n~~l~PDI~GD~IiFt~~D-dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~ 113 (668)
T COG4946 35 HEFCMKNYYLNPDIYGDRIIFTCCD-DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVP 113 (668)
T ss_pred hhhhhhhhhcCCcccCcEEEEEech-HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEe
Confidence 5444555556675 5555544433 3556678899999888888999999999999999984 345788888
Q ss_pred CCCCCcccceeEEEEEeeccCCCeEE-EEEcCCCCeEEEeecCCeEE----EEeecccccCcccccceEeecCCCcEEEE
Q 038577 121 SPGFKKEVFAFELIRTLADCNDKVTA-LNWSPDSNYLLVGSKDLAVR----LFYVKEKLKGIHTNKPFLLLGHRDSVVGC 195 (860)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~s~d~~~l~s~~~dg~v~----vwd~~~~~~~~~~~~~~~~~~h~~~i~~~ 195 (860)
.++|+. ++++-.....+. ..|+|||+.+++...-.-.. +|.+... + ....+-.-++.+.+
T Consensus 114 ~e~Ge~--------kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~d--g-----~~~e~LnlGpathi 178 (668)
T COG4946 114 SEDGEA--------KRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVD--G-----IKTEPLNLGPATHI 178 (668)
T ss_pred CCCCcE--------EEEEEeccccceeeccCCCCCEEEEeccCCCcccceeeeEEccC--C-----ceeeeccCCceeeE
Confidence 888873 222222233333 45999999888765432222 2222211 0 00001111222222
Q ss_pred EEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCC
Q 038577 196 FFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRG 275 (860)
Q Consensus 196 ~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 275 (860)
.+ .||.+.+ --.+- ++..|.-- .+. ..
T Consensus 179 v~----------------~dg~ivi-gRnty---------------------dLP~WK~Y-----kGG---tr------- 205 (668)
T COG4946 179 VI----------------KDGIIVI-GRNTY---------------------DLPHWKGY-----KGG---TR------- 205 (668)
T ss_pred EE----------------eCCEEEE-ccCcc---------------------cCcccccc-----cCC---cc-------
Confidence 22 2232211 11110 01122110 000 00
Q ss_pred CCEEEEEEcCC--eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccCceEEEEecCcccC
Q 038577 276 LDMVVVGFSNG--VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRSESYILKQQGHYFD 351 (860)
Q Consensus 276 ~~~l~~~~~~g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~~~~~~~~~~~~~~ 351 (860)
| .+.++...| -=.+.|++ +.|.+-.+- +..+.+.+.-+ |.++--|+..........-| .
T Consensus 206 G-klWis~d~g~tFeK~vdl~------------~~vS~PmIV--~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFt--d 268 (668)
T COG4946 206 G-KLWISSDGGKTFEKFVDLD------------GNVSSPMIV--GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFT--D 268 (668)
T ss_pred c-eEEEEecCCcceeeeeecC------------CCcCCceEE--cceEEEEecccCccceEEeccCCchhhhcCCch--h
Confidence 0 111222222 11122221 122222221 12222222222 44554455443322211111 2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec---C---CCc--eEE---EE-Eee-CCCEEEEEeCCCcEEEE
Q 038577 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE---H---TNA--VTA---LH-FMA-NNHSLLSASLDGTVRAW 418 (860)
Q Consensus 352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~---~~~--v~~---i~-~~~-~~~~l~s~~~dg~i~~w 418 (860)
-.+-..+.||+.++.. ..|.|.+||..+......-.+ . ..+ +.- +. |++ +|.+++..+. |...+.
T Consensus 269 YY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~ 346 (668)
T COG4946 269 YYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIM 346 (668)
T ss_pred ccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEE
Confidence 2334457789988764 458999999876544321111 0 000 111 11 222 5677777765 556665
Q ss_pred EccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 419 DLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD 498 (860)
Q Consensus 419 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 498 (860)
+...+-. ++.++...+.-..+..+++-++.|..|+-.+-+||..+++.. .+...-+.|.++..+|+|++++.+...
T Consensus 347 ~~~~~~~---iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr 422 (668)
T COG4946 347 RPWDGYS---IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDR 422 (668)
T ss_pred CCCCCee---EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCc
Confidence 5544332 334445557777777777788889888889999999877654 445577899999999999999999988
Q ss_pred CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe----EEEEeCCCCceeEEEecccccCCCcccccccc
Q 038577 499 KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ----IHFWDPLNGELMYTIEGRRDISGGRLMTDRRS 574 (860)
Q Consensus 499 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (860)
..+.+.|+.++.....-....+-|+.++|+|+++++|-+--+|. |++||+.+++.........
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta------------- 489 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA------------- 489 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-------------
Confidence 99999999999865555567778999999999999999977764 8999998887655432221
Q ss_pred ccccCCCCcEEEEEEecCCCEEEEec
Q 038577 575 AANSSSGKCFTTLCYSADGSYILAGG 600 (860)
Q Consensus 575 ~~~~~~~~~i~~l~~s~~g~~l~~~~ 600 (860)
.-.+-+|.|||++|.--+
T Consensus 490 --------~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 490 --------YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred --------cccCcccCCCCcEEEEEe
Confidence 125668999999887544
No 216
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=4e-16 Score=146.50 Aligned_cols=206 Identities=21% Similarity=0.366 Sum_probs=170.9
Q ss_pred ecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------eeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcE
Q 038577 345 QQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSG-------FCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTV 415 (860)
Q Consensus 345 ~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i 415 (860)
+.+|.++|..++|+| +...||+|+.|.+|.||.+..+ +.+..+.+|...|--++|+|.. +.|+++|.|.+|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 468999999999999 5678999999999999998754 4577889999999999999964 688999999999
Q ss_pred EEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC-eEEEEEcCCCCEEEE
Q 038577 416 RAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP-VHGLVFSPTNATLAS 494 (860)
Q Consensus 416 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~-v~~l~~s~~~~~l~s 494 (860)
.+|++.+++....+. +...+.++.|+.+|.++++++.|. .|+|||.++++.+..-.+|.+. -....|-.+|..+-|
T Consensus 157 ~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDK-kvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 157 SIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDK-KVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred EEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccc-eeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 999999999887776 677899999999999999999999 9999999999999988888753 344567778885444
Q ss_pred Ee---CCCcEEEEEccCCccee--EEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeCCCCce
Q 038577 495 SS---WDKTVRLWNVFEGKGSV--ESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFWDPLNGEL 553 (860)
Q Consensus 495 ~~---~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 553 (860)
|- .++.+-+||..+-+... ........|.---|.||.++++.++ .|+.|+.|.+.+..+
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 43 47889999987655433 3335667788888999999886654 589999999977653
No 217
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.1e-15 Score=145.62 Aligned_cols=196 Identities=30% Similarity=0.436 Sum_probs=158.0
Q ss_pred EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389 (860)
Q Consensus 310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (860)
..++|+.+|..+++++.+ |.+++|++.+...+.....|...|.++.|+|||+.|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~d-g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD-GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeecccc-ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 789999999999999887 999999999988888888999999999999999999999999 999999999977766542
Q ss_pred --CCCceEEEEEeeCC-----CEEEEEeCCCcEEEEEcccccee---eEe-eCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577 390 --HTNAVTALHFMANN-----HSLLSASLDGTVRAWDLFRYRNF---RTF-TTPSSRQFVSLASDQSGEVICAGTLDSFE 458 (860)
Q Consensus 390 --~~~~v~~i~~~~~~-----~~l~s~~~dg~i~~wd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (860)
.......+.|+.++ ..++....-+.|+.|++...+.- +.. .......+.+++++++|+++++|+.+| .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG-s 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG-S 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC-c
Confidence 23345677787766 23333445566777776543321 111 112233789999999999999999998 9
Q ss_pred EEEEECCCCceEEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577 459 IFVWSMKTGRLLDIL-SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508 (860)
Q Consensus 459 i~v~d~~~~~~~~~~-~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 508 (860)
|-+++..+.+.++.. +.|...|+.+.|+||.+++++.+.|.+..+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999988777655 57999999999999999999999999999887754
No 218
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.72 E-value=6.8e-14 Score=148.61 Aligned_cols=223 Identities=18% Similarity=0.245 Sum_probs=172.4
Q ss_pred CEEEeeeCCeEEEEECCCCcEE------eeccCCc----------cCeeEE-------------------------EEcC
Q 038577 24 TKLISPVGNRVSVTDLIKSKTV------TLPVESS----------SNICRI-------------------------AVSP 62 (860)
Q Consensus 24 ~~l~~~~~~~i~v~d~~~~~~~------~~~~~h~----------~~v~~v-------------------------a~sp 62 (860)
.+|.++.+..|.+||+..+... .....|. .-|++. .+.-
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~~~~~s~wi~g~~l~~ 97 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQIIERFSDWIFGAKLFE 97 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhhhhhccccccccchhh
Confidence 6889999999999999887642 1122341 012222 2223
Q ss_pred CCCEEEEEcCCCcEEEEEcccCeEEEEeecCCce-----eEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEE
Q 038577 63 DGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPV-----NAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRT 136 (860)
Q Consensus 63 dg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v-----~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~ 136 (860)
+.+.++.+..++.+.+||...+..+..+.+.... .-+-++++.-++++| .-+.|.+|++...+. -..
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~-------p~~ 170 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK-------PIR 170 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC-------cce
Confidence 4467788888899999999999888888755443 234568888899998 779999999984443 226
Q ss_pred eeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCc
Q 038577 137 LADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC 216 (860)
Q Consensus 137 ~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg 216 (860)
+.+|.+.|..+.|+-||+++++.+.|+++|+|++++. +. .....-+|...|+.++|.|+ ++++++.|.
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~-~~----~~~~~fgHsaRvw~~~~~~n-------~i~t~gedc 238 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR-EV----LGCTGFGHSARVWACCFLPN-------RIITVGEDC 238 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccc-cc----cCcccccccceeEEEEeccc-------eeEEeccce
Confidence 8999999999999999999999999999999999998 21 23477899999999999998 699999999
Q ss_pred cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccC-CCCceEEEEecCCCCEEEEEEcCCeEEEEECC
Q 038577 217 YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQ-APSKVTACDYHRGLDMVVVGFSNGVFGLYQMP 294 (860)
Q Consensus 217 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~ 294 (860)
+.++|+.+..+ |. .+.+ ....+..++..++....++++.||.+++|++.
T Consensus 239 tcrvW~~~~~~------------------------l~-----~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 239 TCRVWGVNGTQ------------------------LE-----VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEEEEecccce------------------------eh-----hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 99999766532 22 2222 33568899999999999999999999999875
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=4e-15 Score=136.22 Aligned_cols=232 Identities=19% Similarity=0.228 Sum_probs=183.7
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce---EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES---YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV 378 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 378 (860)
+.....+|++.+|++|+..++++... ..+.||...... ...++..|...|++++|+|..+.|++++.|..-++|..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~-~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNN-HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCC-ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 33445789999999999999998776 899999887654 56677889999999999999999999999999999998
Q ss_pred CCC---eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee---eEeeCCCCCcEEEEEECCCCCEEEEE
Q 038577 379 SSG---FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF---RTFTTPSSRQFVSLASDQSGEVICAG 452 (860)
Q Consensus 379 ~~~---~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (860)
..+ ++...+..++...+++.|+|.++.+++|+....|.+|-++....- +.+..+....+.++.+.|++-++++|
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 433 445566678999999999999999999999999999987654432 33455666789999999999999999
Q ss_pred ecCCCeEEEEECC-----C-------------CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc-ee
Q 038577 453 TLDSFEIFVWSMK-----T-------------GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG-SV 513 (860)
Q Consensus 453 ~~~~~~i~v~d~~-----~-------------~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~ 513 (860)
+.|+ ..++|..- . |+++..+....+.|..+.|+|+|..|+-.+.|..+.+-|...... ..
T Consensus 165 s~D~-k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~ 243 (361)
T KOG1523|consen 165 STDG-KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQ 243 (361)
T ss_pred ccCc-ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhcc
Confidence 9998 78877532 1 233444445678899999999999999999999999999876652 22
Q ss_pred EEcccCCCeEEEEEeeCCCEEE
Q 038577 514 ESFPHTHDVLTVVYRPDGRQLA 535 (860)
Q Consensus 514 ~~~~~~~~v~~~~~s~~~~~l~ 535 (860)
......-+..++.|-.+...++
T Consensus 244 ~~~~~~lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 244 SVATAQLPLLSVSWISENSVVA 265 (361)
T ss_pred chhhccCCceeeEeecCCceee
Confidence 2223336778888876554333
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.4e-15 Score=161.56 Aligned_cols=234 Identities=16% Similarity=0.163 Sum_probs=169.5
Q ss_pred CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccCceEE--EEecCcccCeEEEEEcCC
Q 038577 285 NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRSESYI--LKQQGHYFDVNCLAYSPD 360 (860)
Q Consensus 285 ~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~~~~~--~~~~~~~~~v~~~~~s~~ 360 (860)
+..|.+||..... .+.+..+...+....|+|||+.+++++.++ ..|++||+.++... ..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999985444 556666777899999999999999887543 47999999887543 223333 446899999
Q ss_pred CCEEEEEe-CCCcEEEE--ECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccccceeeEeeCCCCCc
Q 038577 361 SQLLATGA-DDNKVKVW--TVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFRYRNFRTFTTPSSRQ 436 (860)
Q Consensus 361 ~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~~~ 436 (860)
|+.|+.+. .+|.+.+| |+.++. ...+..+...+....|+|||+.++.++ .+|...+|++............. .
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-
Confidence 99888765 57766555 665554 445566777788999999999877554 57888888875432222222221 1
Q ss_pred EEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc--CCcceeE
Q 038577 437 FVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVF--EGKGSVE 514 (860)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~ 514 (860)
....++|+|+.+++.+.+ .+.+||+.+++.......+ ....+.|+|||++|++++.++.+.+|++. ++.....
T Consensus 336 -~~~~~SpDG~~ia~~~~~--~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~ 410 (429)
T PRK01742 336 -YSAQISADGKTLVMINGD--NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR 410 (429)
T ss_pred -CCccCCCCCCEEEEEcCC--CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence 356799999999888775 4777999988765433322 34567899999999999999988888763 4555666
Q ss_pred EcccCCCeEEEEEeeC
Q 038577 515 SFPHTHDVLTVVYRPD 530 (860)
Q Consensus 515 ~~~~~~~v~~~~~s~~ 530 (860)
+..|.+.+...+|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 6678888899999984
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.7e-15 Score=158.70 Aligned_cols=232 Identities=18% Similarity=0.147 Sum_probs=164.0
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA 109 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la 109 (860)
.|.++|........+. .+...+.+.+|||||+.||+.+. +..+.+|++.+++........+.+..++|||||+.|+
T Consensus 180 ~l~~~d~dg~~~~~lt-~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEee-cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 6999999877665554 46678999999999999997643 4579999999887655444556677899999999998
Q ss_pred EE--eC--CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecC-CeEEEEe--ecccccCcccccc
Q 038577 110 VG--TG--KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKD-LAVRLFY--VKEKLKGIHTNKP 182 (860)
Q Consensus 110 ~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~d-g~v~vwd--~~~~~~~~~~~~~ 182 (860)
.. .+ ..|++||+.+++ ...+..+...+....|+|||+.|+..+.+ +...+|. +.++ ..
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~--------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g-------~~ 323 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQ--------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG-------AP 323 (429)
T ss_pred EEEcCCCCcEEEEEECCCCC--------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-------Ce
Confidence 76 22 369999998875 34455555678899999999988877654 4555554 4443 22
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
..+..+........|+|||+ +++..+.+ ..+.+||+.++.. ....
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~-----~Ia~~~~~~g~~~I~~~dl~~g~~------------------------~~Lt--- 371 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGK-----FMVMVSSNGGQQHIAKQDLATGGV------------------------QVLT--- 371 (429)
T ss_pred EEeecCCCCccCEEECCCCC-----EEEEEEccCCCceEEEEECCCCCe------------------------EEeC---
Confidence 33444444566789999998 78776543 3577888776432 1010
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcCCe---EEEEECCCceeEEEEeecCceeEEEEEee
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSNGV---FGLYQMPDFVCIHLLSISREKITTAVFNE 316 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g~---i~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 316 (860)
. ........|+|||+.++..+.++. +.++++ ++.....+..+.+.+...+|+|
T Consensus 372 --~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 --D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 0 112235679999999998887754 667777 5666666766777788888876
No 222
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=9.2e-14 Score=137.43 Aligned_cols=366 Identities=16% Similarity=0.165 Sum_probs=229.6
Q ss_pred EEeeeCCeEEEEECCCCcEEeeccCC---ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEEC
Q 038577 26 LISPVGNRVSVTDLIKSKTVTLPVES---SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFS 102 (860)
Q Consensus 26 l~~~~~~~i~v~d~~~~~~~~~~~~h---~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fs 102 (860)
+++-+...+.+|+....+......++ .......++|++|+++|.+. +..+.|++..++..+.+.... .+.++.||
T Consensus 5 ~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~-~~~~L~fS 82 (566)
T KOG2315|consen 5 YAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK-KTYDLLFS 82 (566)
T ss_pred EEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc-eeeeeeec
Confidence 33444456889988765543333344 34467889999999999876 568999999988766555545 89999999
Q ss_pred CCCCEEEEE-----------eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeec
Q 038577 103 PNGKYIAVG-----------TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVK 171 (860)
Q Consensus 103 pdg~~la~~-----------~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~ 171 (860)
|.|.+|.+- +.-.+.+|+++++.. ...+......-+++.|++|..+.|-- ..+.+.+|+..
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~-------~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~ 154 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQ-------RSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLG 154 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeecccee-------hhheehhhhcCcccccccchhhhhhh-hcceEEEEecC
Confidence 999999874 123677999998432 12222222222689999998654432 34689999987
Q ss_pred ccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEE-----EcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc
Q 038577 172 EKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYT-----IARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE 246 (860)
Q Consensus 172 ~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s-----~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (860)
.. ....-.-|...|..+.++|.+... .+++ .|.-+.+++|......
T Consensus 155 ~f-------~~~~~kl~~~~i~~f~lSpgp~~~---~vAvyvPe~kGaPa~vri~~~~~~~------------------- 205 (566)
T KOG2315|consen 155 SF-------KTIQHKLSVSGITMLSLSPGPEPP---FVAVYVPEKKGAPASVRIYKYPEEG------------------- 205 (566)
T ss_pred Cc-------cceeeeeeccceeeEEecCCCCCc---eEEEEccCCCCCCcEEEEecccccc-------------------
Confidence 74 233334457778888888875420 2221 1222344444332100
Q ss_pred ceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc
Q 038577 247 RRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA 326 (860)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 326 (860)
....+.+=.|.. .|. ..+.|++-|..|++...
T Consensus 206 ----------------~~~~~a~ksFFk---------adk-----------------------vqm~WN~~gt~LLvLas 237 (566)
T KOG2315|consen 206 ----------------QHQPVANKSFFK---------ADK-----------------------VQMKWNKLGTALLVLAS 237 (566)
T ss_pred ----------------ccchhhhccccc---------cce-----------------------eEEEeccCCceEEEEEE
Confidence 000000000100 111 22333333333222111
Q ss_pred -----------cCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEeecCCCc
Q 038577 327 -----------KLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLAT--GADDNKVKVWTVSSGFCFVTFTEHTNA 393 (860)
Q Consensus 327 -----------~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~ 393 (860)
...++++++++.......+ ...++|.++.|+|+++.+++ |-.-..+.|||++ +..+..+ ..++
T Consensus 238 tdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egp 313 (566)
T KOG2315|consen 238 TDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGP 313 (566)
T ss_pred EeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCC
Confidence 1256777777744444333 34789999999999987765 4456789999975 5555555 4677
Q ss_pred eEEEEEeeCCCEEEEEeC---CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECC
Q 038577 394 VTALHFMANNHSLLSASL---DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMK 465 (860)
Q Consensus 394 v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~ 465 (860)
-.++.|+|.|++++.+|- .|.+-+||+.+.+.+..+.... .+-+.|+|||.++++++... +.++||+..
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~---tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN---TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC---ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 789999999999998875 4789999999988877776554 47789999999999987641 268888865
Q ss_pred CCceEEEecCcccCeEEEEEcC
Q 038577 466 TGRLLDILSGHEGPVHGLVFSP 487 (860)
Q Consensus 466 ~~~~~~~~~~h~~~v~~l~~s~ 487 (860)
|..+....- ......+.|-|
T Consensus 391 -G~~l~~~~f-~sEL~qv~W~P 410 (566)
T KOG2315|consen 391 -GSLLHEKMF-KSELLQVEWRP 410 (566)
T ss_pred -Cceeehhhh-hHhHhheeeee
Confidence 554433221 11456666665
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.71 E-value=3.3e-17 Score=156.99 Aligned_cols=274 Identities=18% Similarity=0.281 Sum_probs=218.5
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG 381 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 381 (860)
+....-....+.++.+|+.++.++.. |.+..+|+.++.....+.. ...|..+.|-.+.+++|++-. ..++||| ..|
T Consensus 125 L~l~eFGPY~~~ytrnGrhlllgGrK-GHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~G 200 (545)
T KOG1272|consen 125 LSLPEFGPYHLDYTRNGRHLLLGGRK-GHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYD-NNG 200 (545)
T ss_pred ccccccCCeeeeecCCccEEEecCCc-cceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEec-CCC
Confidence 33344456788999999999999988 9999999999999888754 345889999999888888754 6899999 457
Q ss_pred eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577 382 FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV 461 (860)
Q Consensus 382 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v 461 (860)
..+..+..| ..|..+.|.|..-.|++++..|.++.-|+.+++.+..+..... .+..++-+|-+..+.+|..+| +|.+
T Consensus 201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-~~~vm~qNP~NaVih~GhsnG-tVSl 277 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-RTDVMKQNPYNAVIHLGHSNG-TVSL 277 (545)
T ss_pred cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-ccchhhcCCccceEEEcCCCc-eEEe
Confidence 777777644 5688999999988899999999999999999998888776543 677888999999999999998 9999
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCC
Q 038577 462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDG 541 (860)
Q Consensus 462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 541 (860)
|.....+++..+-.|.++|.++++.++|+++||++.|..++|||++....+..... ..+...+++|..| +||. +...
T Consensus 278 WSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~-~~G~ 354 (545)
T KOG1272|consen 278 WSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLAL-SYGD 354 (545)
T ss_pred cCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceee-ecCC
Confidence 99999999999999999999999999999999999999999999998875554444 5677888998655 3444 4455
Q ss_pred eEEEEeC-CCCc--eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577 542 QIHFWDP-LNGE--LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK 603 (860)
Q Consensus 542 ~i~iwd~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 603 (860)
.+.||.- -.+. .-...-.|. -+.+|..+.|.|-...|-.|...|
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~------------------~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHR------------------CGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhc------------------cCcccccceeccHHHeeeccccCC
Confidence 7999952 2211 111111111 123699999999998888887666
No 224
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.8e-14 Score=145.50 Aligned_cols=528 Identities=13% Similarity=0.116 Sum_probs=338.0
Q ss_pred CCceecccccccccCC--cEEEe-CCCEEEee-eCCeEEEEECCCCcE---------------EeeccCCccCeeEEEEc
Q 038577 1 MNYRFQNLLGAPYRGG--NAVLS-QNTKLISP-VGNRVSVTDLIKSKT---------------VTLPVESSSNICRIAVS 61 (860)
Q Consensus 1 ~~~~~~~~~g~~~~~~--~~~~s-dg~~l~~~-~~~~i~v~d~~~~~~---------------~~~~~~h~~~v~~va~s 61 (860)
|.+..+..+|.+.++. .+.|. ...+||+| .+|.+.+..+.+... ...+.||...|.-+.|.
T Consensus 1 Mfvylskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN 80 (1189)
T KOG2041|consen 1 MFVYLSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN 80 (1189)
T ss_pred CceEeecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence 4556666677777655 47777 88899986 468888887765332 23456999999999999
Q ss_pred CCCCEEEEEcCCCcEEEEEcccCeEEEEee---cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEe
Q 038577 62 PDGTFLLTVDENQRCHFINLHCHVVLHRVR---FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTL 137 (860)
Q Consensus 62 pdg~~la~~~~d~~i~vwd~~~~~~~~~~~---~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~ 137 (860)
.+.+.|-+.+.+|-|.||=+-.|.-...+. .++-|.+++|..||..|+.. .||.|.|=.+++.+-- -..+
T Consensus 81 e~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw------gKeL 154 (1189)
T KOG2041|consen 81 ENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW------GKEL 154 (1189)
T ss_pred cccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec------chhc
Confidence 999999999999999999887765433222 46779999999999999988 8999888777765420 1112
Q ss_pred eccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccC-cccccceE----eecCCCcEEEEEEc--------cCCCCC
Q 038577 138 ADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKG-IHTNKPFL----LLGHRDSVVGCFFS--------VDKKTD 204 (860)
Q Consensus 138 ~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~-~~~~~~~~----~~~h~~~i~~~~~~--------~~~~~~ 204 (860)
.+. ....+.|++|.+.++.+-.+|...++|.+..... +...+... +......|-.+.|. ||..
T Consensus 155 kg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP-- 230 (1189)
T KOG2041|consen 155 KGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRP-- 230 (1189)
T ss_pred chh--eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCC--
Confidence 221 2346889999999888888999999998765211 00011111 11122234455553 3444
Q ss_pred ccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEc
Q 038577 205 KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFS 284 (860)
Q Consensus 205 ~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 284 (860)
.++.+-.+|.+.+-.-..... ......+-.+..+.|+++|..|++++.
T Consensus 231 ---~lavcy~nGr~QiMR~eND~~-----------------------------Pvv~dtgm~~vgakWnh~G~vLAvcG~ 278 (1189)
T KOG2041|consen 231 ---RLAVCYANGRMQIMRSENDPE-----------------------------PVVVDTGMKIVGAKWNHNGAVLAVCGN 278 (1189)
T ss_pred ---EEEEEEcCceehhhhhcCCCC-----------------------------CeEEecccEeecceecCCCcEEEEccC
Confidence 899999998887765544322 111122346888999999999998776
Q ss_pred C---------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577 285 N---------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL 355 (860)
Q Consensus 285 ~---------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~ 355 (860)
+ +.|.+|.. -|....+++.+...|++++|-..|-.++.+.. +.|++=+++..-.-..+. ..|
T Consensus 279 ~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd--sfiyfanIRP~ykWgy~e---~Tv--- 349 (1189)
T KOG2041|consen 279 DSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD--SFIYFANIRPEYKWGYIE---ETV--- 349 (1189)
T ss_pred cccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEec--ceEEEEeecccceEEEee---eEE---
Confidence 4 35666654 78888999999999999999988888877754 677776655432111110 001
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccc-eeeEe-----
Q 038577 356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYR-NFRTF----- 429 (860)
Q Consensus 356 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~----- 429 (860)
.|--.+.- ...-.|.+||..+.+...... ....+++++.+.-.|+.-..|+.+.-++.-... ....+
T Consensus 350 Vy~y~~~e----~p~y~i~Fwdtk~nek~vK~V---~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNS 422 (1189)
T KOG2041|consen 350 VYVYQKEE----LPQYGIMFWDTKTNEKTVKTV---THFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNS 422 (1189)
T ss_pred EEEEccCC----CcceEEEEEecccChhhhhhh---cceeehheecccEEEEeccccCCCcchhhhhcccceEEEeeecc
Confidence 11000000 012357889987665433222 224466676666666666677766655321111 00000
Q ss_pred -eCC---CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce--------------------------------EEEe
Q 038577 430 -TTP---SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL--------------------------------LDIL 473 (860)
Q Consensus 430 -~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~--------------------------------~~~~ 473 (860)
..+ .-..+.-.-..-++..+++++.+ .+++|.....+. ..++
T Consensus 423 IGT~lD~kytdirP~Fv~vn~~~vviAS~e--~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~ 500 (1189)
T KOG2041|consen 423 IGTSLDYKYTDIRPKFVCVNGICVVIASEE--RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTL 500 (1189)
T ss_pred cCCcCCCCcceeeeeEEEecceEEEEeccc--cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceee
Confidence 011 11112222233456677777776 577776432211 1234
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC---C
Q 038577 474 SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL---N 550 (860)
Q Consensus 474 ~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~---~ 550 (860)
.|...+|..++.+ .++|..+-..|.|.-|.+.+.. +......+..+.++...-+...+|.-.--|.+.+.|+. +
T Consensus 501 ~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~-l~n~y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~ 577 (1189)
T KOG2041|consen 501 LGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVV-LTNSYPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFD 577 (1189)
T ss_pred ccCCCcceeeeec--ceEEEEEeccCceEEEEeccee-eeeccccCchheeEeeccCcchhhhhhhhceeeeeecccccC
Confidence 4556788888775 6788899999999999998764 55555667789999999899999999889999999886 4
Q ss_pred CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
|..+.-+..... ..|+.+.|..|...|++--+...+.|++-
T Consensus 578 g~ql~~~~~~er-------------------rDVWd~~Wa~dNp~llAlmeKtrmyifrg 618 (1189)
T KOG2041|consen 578 GDQLKLIYTSER-------------------RDVWDYEWAQDNPNLLALMEKTRMYIFRG 618 (1189)
T ss_pred cceeeeeehhhh-------------------hhhhhhhhccCCchHHhhhhhceEEEecC
Confidence 444443322211 24888888888776665555555666543
No 225
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.70 E-value=1.8e-10 Score=130.92 Aligned_cols=476 Identities=13% Similarity=0.124 Sum_probs=280.5
Q ss_pred CccCeeEEEEcCCCCEEEEEcCCCcEEEE----EcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCC---
Q 038577 51 SSSNICRIAVSPDGTFLLTVDENQRCHFI----NLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSP--- 122 (860)
Q Consensus 51 h~~~v~~va~spdg~~la~~~~d~~i~vw----d~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~--- 122 (860)
....|.++.+-++...++.+..+|.|.+. +..+...-..-.....|.+++||||+.+||.. +++.+.+..-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~ 153 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP 153 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence 44679999999999999999999999999 55544333323367899999999999999988 56677665321
Q ss_pred -------C---CC----------c--cc--ceeEE--------------EEEeeccCCCeEEEEEcCCCCeEEEeec---
Q 038577 123 -------G---FK----------K--EV--FAFEL--------------IRTLADCNDKVTALNWSPDSNYLLVGSK--- 161 (860)
Q Consensus 123 -------~---~~----------~--~~--~~~~~--------------~~~~~~h~~~v~~l~~s~d~~~l~s~~~--- 161 (860)
. +. + ++ ...+. ...+. +.+.-..++|-.||.++|+.+.
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcC
Confidence 0 00 0 00 00000 01122 3445678999999999998764
Q ss_pred ---CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC---CccEEEeeecCCCCCCccccC
Q 038577 162 ---DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR---DCYMFSWGFSGNDGKIDETME 235 (860)
Q Consensus 162 ---dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~ 235 (860)
-+.+|||+-+.. ...+-..-.+--..++|.|.|+ .|++... ...|.+|.-++-..
T Consensus 233 ~~~~R~iRVy~ReG~-------L~stSE~v~gLe~~l~WrPsG~-----lIA~~q~~~~~~~VvFfErNGLrh------- 293 (928)
T PF04762_consen 233 TGSRRVIRVYSREGE-------LQSTSEPVDGLEGALSWRPSGN-----LIASSQRLPDRHDVVFFERNGLRH------- 293 (928)
T ss_pred CCceeEEEEECCCce-------EEeccccCCCccCCccCCCCCC-----EEEEEEEcCCCcEEEEEecCCcEe-------
Confidence 257999997733 2222222223334689999998 8887765 34677776555221
Q ss_pred CCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCcee--EEEEeecC-ceeEEE
Q 038577 236 DSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC--IHLLSISR-EKITTA 312 (860)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~--~~~~~~~~-~~i~~~ 312 (860)
+.+. ..+......|..+.|+++++.||+...+. |.+|...+..- .+.+.... ..+..+
T Consensus 294 --------------geF~----l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 294 --------------GEFT----LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred --------------eeEe----cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 1221 11234556789999999999999988666 99999877542 23343322 244558
Q ss_pred EEeeCCCE-EEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-----eeEE
Q 038577 313 VFNELGNW-LVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSG-----FCFV 385 (860)
Q Consensus 313 ~~s~~~~~-l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~-----~~~~ 385 (860)
.|+|.... +.+.+.. |.+..+++.-..... . ..+|+.. .+++.. ...+.+-.++.. -...
T Consensus 355 ~Wdpe~p~~L~v~t~~-g~~~~~~~~~~v~~s--~---------~~~~~D~g~vaVID-G~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSN-GQYEIYDFAWDVSRS--P---------GSSPNDNGTVAVID-GNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred EECCCCCCEEEEEecC-CcEEEEEEEEEEEec--C---------CCCccCceEEEEEe-CCeEEEecccccCCCchHhce
Confidence 99986544 4444443 666655532111000 0 0111111 222222 235555554432 2223
Q ss_pred EeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee--------eEeeC---------CCCCcEEEEEECCCCCE
Q 038577 386 TFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF--------RTFTT---------PSSRQFVSLASDQSGEV 448 (860)
Q Consensus 386 ~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--------~~~~~---------~~~~~~~~~~~~~~~~~ 448 (860)
.+. -..+|.+++|++++..+++...||.+.+|........ ..+.. .....+..++|..+...
T Consensus 422 ~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (928)
T PF04762_consen 422 ELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTL 500 (928)
T ss_pred EEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEE
Confidence 332 4578999999999988999999999999985432211 11111 12335677888777777
Q ss_pred EEEEecC--CCeEEEEECCCCc---eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeE
Q 038577 449 ICAGTLD--SFEIFVWSMKTGR---LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523 (860)
Q Consensus 449 l~~~~~~--~~~i~v~d~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 523 (860)
+++...+ ...+.+++....+ .......-.+.+..+...++...++.-..+|.+...+..........++....-.
T Consensus 501 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~ 580 (928)
T PF04762_consen 501 LVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWM 580 (928)
T ss_pred EEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCCCCcEE
Confidence 7766654 3478888875332 2333333455666666666655566667799888766555432222222222223
Q ss_pred EEEEeeCCC---EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577 524 TVVYRPDGR---QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG 600 (860)
Q Consensus 524 ~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 600 (860)
.+....+.. .++.-+..|.+++ +++.+. ..++++++ .+.+|+...
T Consensus 581 ~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------------------~~~tSF~v--~~~~Ll~TT 628 (928)
T PF04762_consen 581 EVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------------------SNCTSFAV--TDSFLLFTT 628 (928)
T ss_pred EEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------------------cCCceEEE--EcCEEEEEe
Confidence 333333332 3333344555543 222222 12566666 466787777
Q ss_pred CCCeEEEEECC
Q 038577 601 SSKYICMYDVA 611 (860)
Q Consensus 601 ~dg~v~vwd~~ 611 (860)
....+++.++.
T Consensus 629 ~~h~l~fv~L~ 639 (928)
T PF04762_consen 629 TQHTLKFVHLN 639 (928)
T ss_pred cCceEEEEECc
Confidence 77888888887
No 226
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=6.1e-15 Score=132.91 Aligned_cols=289 Identities=13% Similarity=0.211 Sum_probs=204.3
Q ss_pred ccCeeEEEEc--CC-CCEEEEEcC----CCcEEEEEc--ccCeEEEE--eecCCceeEEEECCCC-----CEEEEEeCCe
Q 038577 52 SSNICRIAVS--PD-GTFLLTVDE----NQRCHFINL--HCHVVLHR--VRFKYPVNAILFSPNG-----KYIAVGTGKL 115 (860)
Q Consensus 52 ~~~v~~va~s--pd-g~~la~~~~----d~~i~vwd~--~~~~~~~~--~~~~~~v~~~~fspdg-----~~la~~~~~~ 115 (860)
.-.+.+++|| |+ +.+||.|+. .+.|.|..+ ++++.+.. +.|..+++.+-|.|+. .+||+ .+..
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-s~D~ 122 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-SSDF 122 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-ccCe
Confidence 3557788888 33 346888764 466777644 45666554 4599999999999987 35665 4668
Q ss_pred EEEEeCCCCCcccceeEE--EEEeeccCCCeEEEEEcC-CCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcE
Q 038577 116 VQIWRSPGFKKEVFAFEL--IRTLADCNDKVTALNWSP-DSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV 192 (860)
Q Consensus 116 i~iwd~~~~~~~~~~~~~--~~~~~~h~~~v~~l~~s~-d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i 192 (860)
+++|.+...+.......+ ..+-..+..++++..|+. |-+++.+.+-|-+..|||++++..+ .....+..|...|
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~---~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG---TVKTQLIAHDKEV 199 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc---ceeeEEEecCcce
Confidence 999998854321111000 112234567899999987 5588999999999999999987222 4567889999999
Q ss_pred EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577 193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY 272 (860)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 272 (860)
..++|...+.. .+++++.||.++++|+...+.... ...-+....+...++|
T Consensus 200 ~DIaf~~~s~~----~FASvgaDGSvRmFDLR~leHSTI-------------------------IYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 200 YDIAFLKGSRD----VFASVGADGSVRMFDLRSLEHSTI-------------------------IYEDPSPSTPLLRLSW 250 (364)
T ss_pred eEEEeccCccc----eEEEecCCCcEEEEEecccccceE-------------------------EecCCCCCCcceeecc
Confidence 99999987654 899999999999999987543100 0000111456777888
Q ss_pred cCCC-CEEEE-EEcCCeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE------EE
Q 038577 273 HRGL-DMVVV-GFSNGVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY------IL 343 (860)
Q Consensus 273 ~~~~-~~l~~-~~~~g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~------~~ 343 (860)
++.. +++|+ +-....|.+.|+... ..+..++.|...|..++|.|....-++++++|.+..+||+..... +.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 8755 45554 344577899998754 566889999999999999999888888888889999999976432 11
Q ss_pred EecCcccCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 038577 344 KQQGHYFDVNCLAYSP-DSQLLATGADDNKVKV 375 (860)
Q Consensus 344 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i 375 (860)
.+ ...++|..+.|++ .+..++.+.. +.+.+
T Consensus 331 ay-~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 331 AY-TAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred hh-hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 12 2456799999996 4567776654 34444
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=2.3e-15 Score=139.92 Aligned_cols=252 Identities=18% Similarity=0.269 Sum_probs=173.4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee-cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc-----
Q 038577 350 FDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT-EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY----- 423 (860)
Q Consensus 350 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~----- 423 (860)
..+..++|++.-..++++..|-.|++|+-.+ .+...++ .....|++++|-|.+..-++.+..+.|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 4578899999777788999999999999766 3333333 34568999999997754444444567999987431
Q ss_pred -------ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe
Q 038577 424 -------RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS 496 (860)
Q Consensus 424 -------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 496 (860)
.+.+.+..+....|+++.+.+||..+++++.+...|.+||..++..+....-..+.++-+.||||+.+|..++
T Consensus 178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 1233455666678999999999999999998888999999999887766544567889999999999999999
Q ss_pred CCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCcccccccc--
Q 038577 497 WDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRS-- 574 (860)
Q Consensus 497 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 574 (860)
-|+..++|............-..+.|...+|+|+|++|+.+.. |.-++|.+.-...-..+.+..++.......+...
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 9999999965444333344445569999999999998776653 3345555432221111111111000000000000
Q ss_pred --ccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577 575 --AANSSSGKCFTTLCYSADGSYILAGGSSK 603 (860)
Q Consensus 575 --~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 603 (860)
.....-++++.+++|.|.|.||++.-..+
T Consensus 337 i~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 337 ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred hhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 01112256789999999999999875443
No 228
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=3.4e-15 Score=157.56 Aligned_cols=286 Identities=17% Similarity=0.226 Sum_probs=204.3
Q ss_pred cEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEE
Q 038577 191 SVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTAC 270 (860)
Q Consensus 191 ~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 270 (860)
+...+.|+|-.. .++++.+...|++||.+.+....... .. ......|+.+
T Consensus 1066 ~pk~~~~hpf~p-----~i~~ad~r~~i~vwd~e~~~~l~~F~-----------------------n~--~~~~t~Vs~l 1115 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP-----QIAAADDRERIRVWDWEKGRLLNGFD-----------------------NG--AFPDTRVSDL 1115 (1387)
T ss_pred CCceeeecCCCc-----eeEEcCCcceEEEEecccCceecccc-----------------------CC--CCCCCcccee
Confidence 455677888777 89999988999999998764311000 01 1234467777
Q ss_pred EecC--CCCEEEEEEcCCeEEEEECC-C----ceeEEEEee-------cCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577 271 DYHR--GLDMVVVGFSNGVFGLYQMP-D----FVCIHLLSI-------SREKITTAVFNELGNWLVFGCAKLGQLLVWEW 336 (860)
Q Consensus 271 ~~~~--~~~~l~~~~~~g~i~~~~~~-~----~~~~~~~~~-------~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~ 336 (860)
.+-. |..++++++.||.|++|+-- + .+.+..... ..+.-.-+.|.....+|++++.- ..|+|||.
T Consensus 1116 ~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~-r~IRIWDa 1194 (1387)
T KOG1517|consen 1116 ELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV-RSIRIWDA 1194 (1387)
T ss_pred eeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe-eEEEEEec
Confidence 7755 45678999999999999743 2 222222211 11122345666666667766654 89999999
Q ss_pred cCceEEEEecC-cccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---eeEEEeecCCCc--eEEEEEeeCCC-EEEE
Q 038577 337 RSESYILKQQG-HYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSSG---FCFVTFTEHTNA--VTALHFMANNH-SLLS 408 (860)
Q Consensus 337 ~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~--v~~i~~~~~~~-~l~s 408 (860)
........+.. ....|+++.-+. .|+.+++|..||.|++||.+.. ..+...+.|+.. |..+.+.+.|- .|++
T Consensus 1195 ~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvS 1274 (1387)
T KOG1517|consen 1195 HKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVS 1274 (1387)
T ss_pred ccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceee
Confidence 98887776643 445567665443 4689999999999999998753 346677788887 99999988774 5999
Q ss_pred EeCCCcEEEEEccccceeeEee--CCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-------cc
Q 038577 409 ASLDGTVRAWDLFRYRNFRTFT--TPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-------HE 477 (860)
Q Consensus 409 ~~~dg~i~~wd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-------h~ 477 (860)
|+.||.|++||++.......+. .+. ....+++.+++....+|+|+. + .|.||++. |+.+..++. ..
T Consensus 1275 gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~-G~~l~~~k~n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1275 GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS-GEQLNIIKYNPGFMGQRI 1351 (1387)
T ss_pred eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC-hhhhcccccCcccccCcC
Confidence 9999999999998753222222 211 234899999999999999998 4 89999987 443333322 24
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577 478 GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGK 510 (860)
Q Consensus 478 ~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 510 (860)
+.+.|++|+|-.-++|+|+.|.+|.||......
T Consensus 1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 678999999999999999999999999876653
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=1.8e-14 Score=131.99 Aligned_cols=235 Identities=14% Similarity=0.247 Sum_probs=167.6
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCc--eEEEEEeeCCCEEE-EEeCC------CcEEEEEccc
Q 038577 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA--VTALHFMANNHSLL-SASLD------GTVRAWDLFR 422 (860)
Q Consensus 352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--v~~i~~~~~~~~l~-s~~~d------g~i~~wd~~~ 422 (860)
..+++|+.|...+++|..+| .+||+.+.-+.......+.+. +..+-| ..++++ .||.+ ..+.+||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEeccc
Confidence 45599999999999988765 899998753332222222222 222323 233444 33333 3699999666
Q ss_pred cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC-CCceEEEecCcccCeEEEEEcC--CCCEEEEEe-CC
Q 038577 423 YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-TGRLLDILSGHEGPVHGLVFSP--TNATLASSS-WD 498 (860)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-~~~~~~~~~~h~~~v~~l~~s~--~~~~l~s~~-~d 498 (860)
.+++.++... .+|.++.+.++. +++.... .|++|... ..+.++.+.....|=--++.+| +..+||.-+ .-
T Consensus 85 ~~~i~el~f~--~~I~~V~l~r~r--iVvvl~~--~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 85 ERCIIELSFN--SEIKAVKLRRDR--IVVVLEN--KIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred CcEEEEEEec--cceeeEEEcCCe--EEEEecC--eEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 6666666544 467888887664 4444443 79999988 5566666654332322333444 445566544 46
Q ss_pred CcEEEEEccCCcc--eeEEcccCCCeEEEEEeeCCCEEEEEeCCCe-EEEEeCCCCceeEEEecccccCCCccccccccc
Q 038577 499 KTVRLWNVFEGKG--SVESFPHTHDVLTVVYRPDGRQLACSTLDGQ-IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSA 575 (860)
Q Consensus 499 g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (860)
|.|+|-|+...+. ......|.+.|.+++++-+|..+|+++..|+ |+|||..+|+++.+++...+.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~------------ 226 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR------------ 226 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch------------
Confidence 8999999987664 4667789999999999999999999999998 899999999999998754432
Q ss_pred cccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 576 ANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 576 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
..|.+++||||+.+|+++++.|++.||.+...
T Consensus 227 ------A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 227 ------ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ------heEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 35999999999999999999999999998764
No 230
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.69 E-value=2.1e-13 Score=133.16 Aligned_cols=374 Identities=14% Similarity=0.146 Sum_probs=242.0
Q ss_pred eeeCCeEE-EEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCC
Q 038577 28 SPVGNRVS-VTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGK 106 (860)
Q Consensus 28 ~~~~~~i~-v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~ 106 (860)
+-.+..|. +|+..+...........-++..+.+||.|++|++... ..|.+|.-.....+..+.|. .|..+.|||.++
T Consensus 7 ~~~s~~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~-~V~~~~fSP~~k 84 (561)
T COG5354 7 LDYSAVISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRHP-DVKYLDFSPNEK 84 (561)
T ss_pred eeccceEEEeecCccccccccccccCcchhheeecCcchheehhhc-cceEEccccchhheeeeecC-CceecccCcccc
Confidence 33444444 5666666665555336678899999999999998765 46899998887777777654 599999999999
Q ss_pred EEEEE----------------eCCeEEEEeCCCCCcccceeEEEEEeeccCCC--eE-EEEEcCCCCeEEEeecCCeEEE
Q 038577 107 YIAVG----------------TGKLVQIWRSPGFKKEVFAFELIRTLADCNDK--VT-ALNWSPDSNYLLVGSKDLAVRL 167 (860)
Q Consensus 107 ~la~~----------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--v~-~l~~s~d~~~l~s~~~dg~v~v 167 (860)
||.+- .++.+.+||..++. ++..+.+...+ .+ -+.|+.|.+++|-... ..+.|
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~-------iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i 156 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM-------IVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYI 156 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCce-------eEeeccccCCcccccceeeeeecchhhhhhcc-CeEEE
Confidence 99985 22468999999987 46666665555 45 6889999888776533 47999
Q ss_pred EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577 168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER 247 (860)
Q Consensus 168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (860)
+++...... .....+. ...|....|+|.++. ..+..|-.+..
T Consensus 157 ~e~t~n~~~---~p~~~lr--~~gi~dFsisP~~n~------------~~la~~tPEk~--------------------- 198 (561)
T COG5354 157 HEITDNIEE---HPFKNLR--PVGILDFSISPEGNH------------DELAYWTPEKL--------------------- 198 (561)
T ss_pred EecCCcccc---Cchhhcc--ccceeeEEecCCCCC------------ceEEEEccccC---------------------
Confidence 997322010 1111111 345666677776541 11344433221
Q ss_pred eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577 248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK 327 (860)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 327 (860)
...+.+++|.++....+.+-....-.-..+.|.+.|+++++-...
T Consensus 199 -----------------------------------~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 199 -----------------------------------NKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred -----------------------------------CCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 123344555554444433333332233445566666655442211
Q ss_pred ----------CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEeecCCCceE
Q 038577 328 ----------LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA--DDNKVKVWTVSSGFCFVTFTEHTNAVT 395 (860)
Q Consensus 328 ----------~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~ 395 (860)
...++++++......... ...++|...+|.|.++.+++.+ .+..+.++|++.. .... .....=.
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~--~Pe~~rN 319 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFY--FPEQKRN 319 (561)
T ss_pred eeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEe--cCCcccc
Confidence 156778887754443332 5678899999999998877655 6778999998765 3322 2344556
Q ss_pred EEEEeeCCCEEEEEeCC---CcEEEEEccccceee-EeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECCC
Q 038577 396 ALHFMANNHSLLSASLD---GTVRAWDLFRYRNFR-TFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMKT 466 (860)
Q Consensus 396 ~i~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~ 466 (860)
.+.|+|.+++++.++-| |.+-+||........ .+.... ..-+.|+||+.++.+..... ..+.+||+..
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 78899999999998865 579999986654433 444332 35567999999998865422 2788999875
Q ss_pred CceEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDK 499 (860)
Q Consensus 467 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 499 (860)
.... ..+.+.|.|.+++.-+.+.+.
T Consensus 397 ~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 397 AKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred chhh--------hhhhccccCCcccceeeccCC
Confidence 4432 456788999888777766554
No 231
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=2.8e-15 Score=146.64 Aligned_cols=236 Identities=19% Similarity=0.223 Sum_probs=158.7
Q ss_pred EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE----ecCcccCeEEEEE-----cCCCCEEEEEeCCCcEEEEECCC
Q 038577 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK----QQGHYFDVNCLAY-----SPDSQLLATGADDNKVKVWTVSS 380 (860)
Q Consensus 310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~----~~~~~~~v~~~~~-----s~~~~~l~~~~~dg~i~iwd~~~ 380 (860)
....++-.|++|++.-. ..+++|+.+.+..... ..-......|=+| .|.+--++.|-.-|.|.+.|...
T Consensus 127 ~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 127 TNTNQSGKGDRLCFNVG--RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeccccCCCCEEEEecC--CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 34444556677766655 5788888775332211 1111111223333 45666788888889999998765
Q ss_pred CeeEEEe----ecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC
Q 038577 381 GFCFVTF----TEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD 455 (860)
Q Consensus 381 ~~~~~~~----~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (860)
.+..+.+ ......|+++.|-|.+ ..++.+-.+|.+.+||..-. ... .-.+...-+++..+++....
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-------~~~--t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-------CGA--TAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-------ccC--CCCcccccCCCCeeEEeeee
Confidence 2221111 1134789999999865 46667778999999987211 111 11122233445444433322
Q ss_pred CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEE
Q 038577 456 SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLA 535 (860)
Q Consensus 456 ~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 535 (860)
+ ..+..++..+.--.+.|...+|+|||++||+.+.||.+||||..+.+.+......-+...|++|||||++++
T Consensus 276 s-------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIv 348 (636)
T KOG2394|consen 276 S-------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIV 348 (636)
T ss_pred c-------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEE
Confidence 1 011234444444466899999999999999999999999999998876655556778899999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEeccccc
Q 038577 536 CSTLDGQIHFWDPLNGELMYTIEGRRDI 563 (860)
Q Consensus 536 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 563 (860)
+|++|..|.||.+..++.+..-++|+.+
T Consensus 349 tGGEDDLVtVwSf~erRVVARGqGHkSW 376 (636)
T KOG2394|consen 349 TGGEDDLVTVWSFEERRVVARGQGHKSW 376 (636)
T ss_pred ecCCcceEEEEEeccceEEEeccccccc
Confidence 9999999999999999999999998875
No 232
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.6e-16 Score=149.66 Aligned_cols=295 Identities=16% Similarity=0.190 Sum_probs=225.0
Q ss_pred cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCC--CCeEEEeecCCeEEEE
Q 038577 92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPD--SNYLLVGSKDLAVRLF 168 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--~~~l~s~~~dg~v~vw 168 (860)
|.+.|..+.|...|..|+++ .|..|.+||+..+.. ...-..+|...|....|-|. .+.+++++.||.|++=
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~------~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP------KLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCc------ccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 88999999999999999999 678999999998875 35556789988888889884 4779999999999998
Q ss_pred eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcce
Q 038577 169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERR 248 (860)
Q Consensus 169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (860)
.+...... .....+..|.++|..++.-|+... .|++++.|+.+.-+|+..+........
T Consensus 215 ~i~~t~~~---e~t~rl~~h~g~vhklav~p~sp~----~f~S~geD~~v~~~Dlr~~~pa~~~~c-------------- 273 (559)
T KOG1334|consen 215 EILETGYV---ENTKRLAPHEGPVHKLAVEPDSPK----PFLSCGEDAVVFHIDLRQDVPAEKFVC-------------- 273 (559)
T ss_pred eeccccce---ecceecccccCccceeeecCCCCC----cccccccccceeeeeeccCCccceeee--------------
Confidence 77654122 335678889999999999998875 899999999999999987654211110
Q ss_pred eeeEEeeeeccccCCCCceEEEEecCCCC-EEEEEEcCCeEEEEECCCceeE------EE------EeecCceeEEEEEe
Q 038577 249 VKKWGLLRKDDFSQAPSKVTACDYHRGLD-MVVVGFSNGVFGLYQMPDFVCI------HL------LSISREKITTAVFN 315 (860)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~g~i~~~~~~~~~~~------~~------~~~~~~~i~~~~~s 315 (860)
+..-....-....++..|... .+++|+.+-.+++||.+..... .. .....-.|++++++
T Consensus 274 --------r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys 345 (559)
T KOG1334|consen 274 --------READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS 345 (559)
T ss_pred --------eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec
Confidence 000000112467888888765 7899999999999997643221 11 11223469999999
Q ss_pred eCCCEEEEEEccCCcEEEEEccC--c----------eEEEE-ecCccc--CeEEEEE-cCCCCEEEEEeCCCcEEEEECC
Q 038577 316 ELGNWLVFGCAKLGQLLVWEWRS--E----------SYILK-QQGHYF--DVNCLAY-SPDSQLLATGADDNKVKVWTVS 379 (860)
Q Consensus 316 ~~~~~l~~~~~~~g~i~v~d~~~--~----------~~~~~-~~~~~~--~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~ 379 (860)
.++.-++++..+ -.|+++.-.- | ..+.. +++|.. .|.++-| -|...++++|+.-|.|.||+-.
T Consensus 346 h~~sElLaSYnD-e~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~ 424 (559)
T KOG1334|consen 346 HDGSELLASYND-EDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK 424 (559)
T ss_pred CCccceeeeecc-cceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence 888877777665 7788884322 2 22222 567754 4666664 6788899999999999999999
Q ss_pred CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577 380 SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 380 ~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 422 (860)
+++.++.+.+...-|.|+.-+|--..|+++|-|..|+||...+
T Consensus 425 t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 425 TGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred hhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9999998888888999999999999999999999999998643
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.2e-14 Score=153.01 Aligned_cols=231 Identities=12% Similarity=0.051 Sum_probs=161.1
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA 109 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la 109 (860)
.|.++|..+.....+. .|...+.+.+|||||+.||+.+. +..|.+||+.+++......+.+.+.+.+|||||+.|+
T Consensus 183 ~l~~~d~dg~~~~~lt-~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQDGANVRYLT-DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCCCCCcEEEe-cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 6999998776665544 67888999999999999998764 4689999999987765555677888999999999887
Q ss_pred EE--e--CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccccc
Q 038577 110 VG--T--GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 110 ~~--~--~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~ 182 (860)
.. . ...|++||+.++. ...+..+.+......|+|||+.|+..+. +| .|.+||+.++ ..
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~--------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-------~~ 326 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGT--------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-------NP 326 (435)
T ss_pred EEEecCCCceEEEEECCCCc--------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-------Ce
Confidence 65 2 3468888988775 3556667777788999999999887764 33 5777776654 23
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
..+..+...+....|+||++ .|+..+.+ ..+.+|++.++.. ..
T Consensus 327 ~~lt~~~~~~~~~~~SpdG~-----~ia~~~~~~~~~~i~~~d~~~~~~------------------------~~----- 372 (435)
T PRK05137 327 RRISFGGGRYSTPVWSPRGD-----LIAFTKQGGGQFSIGVMKPDGSGE------------------------RI----- 372 (435)
T ss_pred EEeecCCCcccCeEECCCCC-----EEEEEEcCCCceEEEEEECCCCce------------------------Ee-----
Confidence 34444455667788999999 88776543 3577777654321 00
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcC------CeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSN------GVFGLYQMPDFVCIHLLSISREKITTAVFNE 316 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 316 (860)
+. ....+....|+|+|+.++....+ ..+.++++..+.. ..+.. ...+...+|+|
T Consensus 373 lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 373 LT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred cc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 00 11235678899999998876543 2577788755443 33332 33455556654
No 234
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1e-15 Score=147.95 Aligned_cols=309 Identities=15% Similarity=0.172 Sum_probs=224.4
Q ss_pred eeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCceeEEEECCCC--CEEEE-EeCCeEEEEe
Q 038577 46 TLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYPVNAILFSPNG--KYIAV-GTGKLVQIWR 120 (860)
Q Consensus 46 ~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~fspdg--~~la~-~~~~~i~iwd 120 (860)
..+.+|.+.|..|.|...|..|++++.|..|.+||+..+.....+. |...|-...|-|.. +-|++ +.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 4456899999999999999999999999999999999999888887 77788777787732 44444 4899999876
Q ss_pred CCCCCcccceeEEEEEeeccCCCeEEEEEcCCC-CeEEEeecCCeEEEEeecccccCcccccceEeecCCC---cEEEEE
Q 038577 121 SPGFKKEVFAFELIRTLADCNDKVTALNWSPDS-NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRD---SVVGCF 196 (860)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~-~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~---~i~~~~ 196 (860)
+...... .-...+..|.++|..++.-|+. .-|.+++.|+.+.-.|+.... . .........+.. ....++
T Consensus 216 i~~t~~~----e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~-p--a~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 216 ILETGYV----ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDV-P--AEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred eccccce----ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCC-c--cceeeeeccCCccceeeeeEe
Confidence 6543321 1235677899999999999987 468899999999999988761 1 112222233333 456677
Q ss_pred EccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCC
Q 038577 197 FSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGL 276 (860)
Q Consensus 197 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 276 (860)
..|.... .+++++.|..+++||...-...... ..+. ............-.|+|++|+.++
T Consensus 289 ~~P~nt~----~faVgG~dqf~RvYD~R~~~~e~~n--------------~~~~--~f~p~hl~~d~~v~ITgl~Ysh~~ 348 (559)
T KOG1334|consen 289 VDPRNTN----EFAVGGSDQFARVYDQRRIDKEENN--------------GVLD--KFCPHHLVEDDPVNITGLVYSHDG 348 (559)
T ss_pred cCCCCcc----ccccCChhhhhhhhcccchhhcccc--------------chhh--hcCCccccccCcccceeEEecCCc
Confidence 7776653 8999999999999998763221000 0000 011122223445679999999999
Q ss_pred CEEEEEEcCCeEEEEECC--Cc----------eeE-EEEeecCc--eeEEEEEe-eCCCEEEEEEccCCcEEEEEccCce
Q 038577 277 DMVVVGFSNGVFGLYQMP--DF----------VCI-HLLSISRE--KITTAVFN-ELGNWLVFGCAKLGQLLVWEWRSES 340 (860)
Q Consensus 277 ~~l~~~~~~g~i~~~~~~--~~----------~~~-~~~~~~~~--~i~~~~~s-~~~~~l~~~~~~~g~i~v~d~~~~~ 340 (860)
.-+++...|-.|++++-. .+ ... +.+++|.. .|..+-|- |..++++++ ++.|.|.+|+-.+++
T Consensus 349 sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSG-SDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 349 SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSG-SDCGHIFIWDKKTGE 427 (559)
T ss_pred cceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEec-CccceEEEEecchhH
Confidence 889999999999999543 22 112 22556554 46667665 455555555 566999999999999
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF 382 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 382 (860)
.+..+.+...-|+|+.-+|--..||+.+-|..|+||...+.+
T Consensus 428 ii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 428 IIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred HHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 888887766689999999999999999999999999875443
No 235
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2.7e-14 Score=151.04 Aligned_cols=233 Identities=14% Similarity=0.048 Sum_probs=160.1
Q ss_pred cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577 75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS 150 (860)
Q Consensus 75 ~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 150 (860)
.|.+||...........+...+.+.+|||||+.||.. .+..|++|++.+++. ..+....+.+..++|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--------~~l~~~~~~~~~~~~S 251 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--------RQVASFPRHNGAPAFS 251 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEccCCCCCcCCeEEC
Confidence 7899998876655555577789999999999999976 345899999988762 2333334445678999
Q ss_pred CCCCeEEEe-ecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-CccEEEee--ec
Q 038577 151 PDSNYLLVG-SKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMFSWG--FS 224 (860)
Q Consensus 151 ~d~~~l~s~-~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~~w~--~~ 224 (860)
|||+.|+.. +.+| .|.+||++++ ....+..+...+....|+||++ .|+..+. ++...+|. +.
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg-------~~~~lt~~~~~~~~~~wSPDG~-----~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASG-------QIRQVTDGRSNNTEPTWFPDSQ-----NLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCC-------CEEEccCCCCCcCceEECCCCC-----EEEEEeCCCCCceEEEEECC
Confidence 999988865 3444 5888888776 2334444555678899999998 7876665 45555554 43
Q ss_pred CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEEE
Q 038577 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIHL 301 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~~ 301 (860)
++.. ..+...........|+|+|+.++....+ ..|.+||+.+++...
T Consensus 320 ~g~~-----------------------------~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~- 369 (429)
T PRK03629 320 GGAP-----------------------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV- 369 (429)
T ss_pred CCCe-----------------------------EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-
Confidence 3211 0111122345578899999999876544 468889998776433
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCC--cEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLG--QLLVWEWRSESYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 359 (860)
+... .......|+|||+.+++++.+.+ .+.++++ ++.....+..|.+.+...+|+|
T Consensus 370 Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 370 LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 3322 23456789999999999987643 3666776 4444555667888888888987
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.4e-14 Score=154.36 Aligned_cols=232 Identities=16% Similarity=0.101 Sum_probs=158.7
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA 109 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la 109 (860)
.|.+||..++....+. .+...+.+.+|||||+.||+++. +..|.+||+.+++........+...+++|||||+.|+
T Consensus 185 ~l~i~D~~g~~~~~lt-~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 185 ALQVADSDGYNPQTIL-RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEECCCCCCceEee-cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 5999998766555544 56778999999999999998764 3479999999887655444566667899999999887
Q ss_pred EE--e--CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCe--EEEEeecccccCcccccc
Q 038577 110 VG--T--GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLA--VRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 110 ~~--~--~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~ 182 (860)
.. . ...|++||+.+++ ...+..+.......+|+|||+.|+.++. +|. |.++++.++ ..
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~--------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g-------~~ 328 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQ--------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG-------SA 328 (433)
T ss_pred EEEeCCCCceEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC-------Ce
Confidence 65 2 3479999998876 3455666666678999999998887764 445 555555444 12
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcCCc---cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC---YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
..+..+.......+|+|||+ .|+..+.++ .|.+|++.++.. . .
T Consensus 329 ~~lt~~g~~~~~~~~SpDG~-----~Ia~~~~~~~~~~I~v~d~~~g~~------------------------~-----~ 374 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDGK-----KIAMVHGSGGQYRIAVMDLSTGSV------------------------R-----T 374 (433)
T ss_pred EEeecCCCCccCEEECCCCC-----EEEEEECCCCceeEEEEECCCCCe------------------------E-----E
Confidence 22223334445689999999 887765433 588998876432 0 0
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIHLLSISREKITTAVFNE 316 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 316 (860)
+. +........|+|+|+.++....+ +.+.+++.. +.....+..+.+.+...+|+|
T Consensus 375 Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 375 LT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 11 11123356899999998877653 467778874 444555554445566666665
No 237
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.66 E-value=1.4e-13 Score=134.24 Aligned_cols=351 Identities=15% Similarity=0.159 Sum_probs=239.0
Q ss_pred Cceeccccc-ccccCCcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC------
Q 038577 2 NYRFQNLLG-APYRGGNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN------ 73 (860)
Q Consensus 2 ~~~~~~~~g-~~~~~~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d------ 73 (860)
+|...+.++ ..+...++++| .|++|++.....|.+|.-...-.+..+ .| ..|..+.|||.++||.+-+..
T Consensus 21 s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 21 SEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RH-PDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cccccccccccCcchhheeecCcchheehhhccceEEccccchhheeee-ec-CCceecccCcccceeeeeccCCccChh
Confidence 455566666 55666789999 999999999999999998877644433 34 569999999999999986433
Q ss_pred ---------CcEEEEEcccCeEEEEeec-CCc--ee-EEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc
Q 038577 74 ---------QRCHFINLHCHVVLHRVRF-KYP--VN-AILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC 140 (860)
Q Consensus 74 ---------~~i~vwd~~~~~~~~~~~~-~~~--v~-~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h 140 (860)
+.+.+||+.+|..+..+.. ..+ .. -+.|+-|.+|+|-.....+.|+++ ++.....++ +.+.
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~---~~lr-- 172 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPF---KNLR-- 172 (561)
T ss_pred hccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCch---hhcc--
Confidence 3599999999999998872 222 33 689999999999888899999997 443222222 1221
Q ss_pred CCCeEEEEEcCCC--CeEEE-----eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc
Q 038577 141 NDKVTALNWSPDS--NYLLV-----GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA 213 (860)
Q Consensus 141 ~~~v~~l~~s~d~--~~l~s-----~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~ 213 (860)
...|....|+|.+ ..||. .+.++++++|.+... . ......-....=..+.|.+.|+ +++.--
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-s-----~l~tk~lfk~~~~qLkW~~~g~-----~ll~l~ 241 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-S-----VLVTKNLFKVSGVQLKWQVLGK-----YLLVLV 241 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC-C-----eeeeeeeEeecccEEEEecCCc-----eEEEEE
Confidence 3558888999964 33554 456789999998855 2 2222111122223466777776 444322
Q ss_pred C-----------CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEE
Q 038577 214 R-----------DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVG 282 (860)
Q Consensus 214 ~-----------dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 282 (860)
. ...+.++++..... .......++|...+|.|.++.+++.
T Consensus 242 ~t~~ksnKsyfgesnLyl~~~~e~~i-----------------------------~V~~~~~~pVhdf~W~p~S~~F~vi 292 (561)
T COG5354 242 MTHTKSNKSYFGESNLYLLRITERSI-----------------------------PVEKDLKDPVHDFTWEPLSSRFAVI 292 (561)
T ss_pred EEeeecccceeccceEEEEeeccccc-----------------------------ceeccccccceeeeecccCCceeEE
Confidence 1 12345555443211 0111346789999999999887754
Q ss_pred --EcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccCceEEE-EecCcccCeEEEEE
Q 038577 283 --FSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSESYIL-KQQGHYFDVNCLAY 357 (860)
Q Consensus 283 --~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~~~~~~-~~~~~~~~v~~~~~ 357 (860)
.....+.+++++.. . .+......-..+.|+|.++++++++-+ .|.+.+||........ .+.+.. .+-+.|
T Consensus 293 ~g~~pa~~s~~~lr~N-l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~w 367 (561)
T COG5354 293 SGYMPASVSVFDLRGN-L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDW 367 (561)
T ss_pred ecccccceeecccccc-e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeec
Confidence 46788889998654 2 233445566778899999999997765 3889999988765544 454433 456789
Q ss_pred cCCCCEEEEEeC------CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577 358 SPDSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 358 s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
+||++++.+... |..|.+||+...... ..+.+.|.|.+++..+.+.+.
T Consensus 368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred cCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 999999887643 778999998643221 456788888887776666554
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.66 E-value=1.7e-11 Score=130.74 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=145.9
Q ss_pred CCCEEEeeeCCeEEEEECCCCcEEeeccCCccC-----eeEEEEcCCCCEEEEEcCCCcEEEEEccc-CeEEEEeecCCc
Q 038577 22 QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSN-----ICRIAVSPDGTFLLTVDENQRCHFINLHC-HVVLHRVRFKYP 95 (860)
Q Consensus 22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~-----v~~va~spdg~~la~~~~d~~i~vwd~~~-~~~~~~~~~~~~ 95 (860)
+.+..+..+.+.+.+||...+...... .+... ..-+-++++.-++++|+.-+.|++|+... ....+...|.+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i-~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKI-QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhc-CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 444444456789999999988775544 33332 22345578888999999999999999873 333444559999
Q ss_pred eeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccc
Q 038577 96 VNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKL 174 (860)
Q Consensus 96 v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~ 174 (860)
|-++.|+-||+++++. .|.++++|++++.+. +.....+|+.+|+.+.|.|. ++++++.|.+.++|+.+..
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~------~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~- 248 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREV------LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT- 248 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccc------cCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-
Confidence 9999999999999999 789999999999875 23467799999999999998 8999999999999976654
Q ss_pred cCcccccceEeecCC-CcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577 175 KGIHTNKPFLLLGHR-DSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG 225 (860)
Q Consensus 175 ~~~~~~~~~~~~~h~-~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 225 (860)
......+|. ..|+.++..++.. .+++++.|+.+++|++..
T Consensus 249 ------~l~~y~~h~g~~iw~~~~~~~~~-----~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 249 ------QLEVYDEHSGKGIWKIAVPIGVI-----IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ------eehhhhhhhhcceeEEEEcCCce-----EEEeeccCcchhhhhhhc
Confidence 233666664 5688999998888 999999999999999875
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.3e-14 Score=149.83 Aligned_cols=235 Identities=17% Similarity=0.143 Sum_probs=157.2
Q ss_pred CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEE
Q 038577 32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI 108 (860)
Q Consensus 32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~l 108 (860)
..|.++|........+. .+...+.+.+|||||+.||+.+.+ ..|.+||+.+++........+.+.+.+|||||+.|
T Consensus 176 ~~L~~~D~dG~~~~~l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSAL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 35888888655444444 677889999999999999987643 46999999998776554456677899999999998
Q ss_pred EEE--eCCe--EEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccce
Q 038577 109 AVG--TGKL--VQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPF 183 (860)
Q Consensus 109 a~~--~~~~--i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~ 183 (860)
+.. .++. |+++|..++. ...+..+.+......|+|||+.|+..+. +|...+|.++.. .. ...
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~-~g----~~~ 321 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG--------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS-GG----AAQ 321 (427)
T ss_pred EEEEccCCCceEEEEECCCCC--------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC-CC----ceE
Confidence 865 4554 5555555543 3455666666778899999998887654 467777776533 11 122
Q ss_pred EeecCCCcEEEEEEccCCCCCccceEEEEcCCc---cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577 184 LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC---YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF 260 (860)
Q Consensus 184 ~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (860)
.+..+........|+|||+ +|+..+.++ .|.+|++.++... . +
T Consensus 322 ~lt~~g~~~~~~~~SpDG~-----~Ia~~s~~~g~~~I~v~d~~~g~~~----------------------------~-l 367 (427)
T PRK02889 322 RVTFTGSYNTSPRISPDGK-----LLAYISRVGGAFKLYVQDLATGQVT----------------------------A-L 367 (427)
T ss_pred EEecCCCCcCceEECCCCC-----EEEEEEccCCcEEEEEEECCCCCeE----------------------------E-c
Confidence 2222233344678999999 888776554 6899998765320 0 0
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIHLLSISREKITTAVFNE 316 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 316 (860)
.. ........|+|+|+.|+....++ .+.+.+. ++.....+..+.+.+...+|+|
T Consensus 368 t~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 368 TD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCC
Confidence 01 11235678999999998777553 3555566 4555555555555666667765
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1.7e-15 Score=145.36 Aligned_cols=285 Identities=12% Similarity=0.087 Sum_probs=221.7
Q ss_pred ECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEE
Q 038577 38 DLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQ 117 (860)
Q Consensus 38 d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~ 117 (860)
|+.+.....-+.--......+.++.+|++|+.++..|.+-..|+.+++....+.....|.++.|-.+.+++|++..+.++
T Consensus 115 di~sa~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~y 194 (545)
T KOG1272|consen 115 DIASATKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVY 194 (545)
T ss_pred cHHhHHhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEE
Confidence 33333333333223455678999999999999999999999999999999999989999999999999999999999999
Q ss_pred EEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEE
Q 038577 118 IWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFF 197 (860)
Q Consensus 118 iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 197 (860)
|||-.+-+ ++.+..| ..|..+.|.|..-+|++++..|.++.-|+..+ ..+..+....+.+..++-
T Consensus 195 vYD~~GtE--------lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G------klVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 195 VYDNNGTE--------LHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG------KLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred EecCCCcE--------Eeehhhc-CchhhhcccchhheeeecccCCceEEEeechh------hhhHHHHccCCccchhhc
Confidence 99987765 3445444 56899999999989999999999999999999 667777778888888998
Q ss_pred ccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCC
Q 038577 198 SVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLD 277 (860)
Q Consensus 198 ~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 277 (860)
.|-+. .+-+|...|+|.+|+....++ ...+..|.++|.++++.++|.
T Consensus 260 NP~Na-----Vih~GhsnGtVSlWSP~skeP----------------------------LvKiLcH~g~V~siAv~~~G~ 306 (545)
T KOG1272|consen 260 NPYNA-----VIHLGHSNGTVSLWSPNSKEP----------------------------LVKILCHRGPVSSIAVDRGGR 306 (545)
T ss_pred CCccc-----eEEEcCCCceEEecCCCCcch----------------------------HHHHHhcCCCcceEEECCCCc
Confidence 99887 899999999999998877543 233446888999999999999
Q ss_pred EEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-Cc--eEEEEe--cCcccCe
Q 038577 278 MVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-SE--SYILKQ--QGHYFDV 352 (860)
Q Consensus 278 ~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-~~--~~~~~~--~~~~~~v 352 (860)
++++.+.|..+.|||+.....+.++.. ..+...+++|..|-. +++.+ ..+.+|.-. .+ .....+ ....+.|
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglL-A~~~G--~~v~iw~d~~~~s~~~~~pYm~H~~~~~V 382 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLL-ALSYG--DHVQIWKDALKGSGHGETPYMNHRCGGPV 382 (545)
T ss_pred EEeecccccceeEeeeccccccceeec-CCCccccccccccce-eeecC--CeeeeehhhhcCCCCCCcchhhhccCccc
Confidence 999999999999999999888777766 456777888866543 33333 578888522 21 111111 1123478
Q ss_pred EEEEEcCCCCEEEEEeCCCcEE
Q 038577 353 NCLAYSPDSQLLATGADDNKVK 374 (860)
Q Consensus 353 ~~~~~s~~~~~l~~~~~dg~i~ 374 (860)
..+.|.|-...|-+|...|.-.
T Consensus 383 ~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 383 EDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred ccceeccHHHeeeccccCCcee
Confidence 8888888776666665554333
No 241
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.63 E-value=3.6e-14 Score=139.06 Aligned_cols=252 Identities=15% Similarity=0.174 Sum_probs=177.9
Q ss_pred ceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE-----cCCCCeEEEeecCCeEEEEe
Q 038577 95 PVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW-----SPDSNYLLVGSKDLAVRLFY 169 (860)
Q Consensus 95 ~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-----s~d~~~l~s~~~dg~v~vwd 169 (860)
.+....++-.|++|+..-...+++|+..++...-.+. .+.+.. ....+|-+| .|++--|+.|-.-|.|.+.|
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi--~k~~y~-gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~id 201 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPI--DKREYK-GTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLID 201 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccch--hhhccc-CCCCceecccccccCCCCcceEEeeccCceEEec
Confidence 4556667778899999988999999998654322121 111111 112234444 45666678887888898888
Q ss_pred ecccccCcccccc--eEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577 170 VKEKLKGIHTNKP--FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER 247 (860)
Q Consensus 170 ~~~~~~~~~~~~~--~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (860)
.... +. ... ....-.+..++++.|.|.+.. .++.+-.+|.++++|..-...
T Consensus 202 p~~~-~~---sklfne~r~i~ktsvT~ikWvpg~~~----~Fl~a~~sGnlyly~~~~~~~------------------- 254 (636)
T KOG2394|consen 202 PINF-EV---SKLFNEERLINKSSVTCIKWVPGSDS----LFLVAHASGNLYLYDKEIVCG------------------- 254 (636)
T ss_pred chhh-HH---HHhhhhcccccccceEEEEEEeCCCc----eEEEEEecCceEEeecccccc-------------------
Confidence 7653 11 111 111223478999999997764 777778899999998743111
Q ss_pred eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc
Q 038577 248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK 327 (860)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~ 327 (860)
..-.+....+++..+.+....+. .+..++..+....+.|...+|+|||++|++.+.+
T Consensus 255 -----------------~t~p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqD 311 (636)
T KOG2394|consen 255 -----------------ATAPSYQALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQD 311 (636)
T ss_pred -----------------CCCCcccccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEecC
Confidence 00111222344555544332221 1224455555566789999999999999999877
Q ss_pred CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEe
Q 038577 328 LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFM 400 (860)
Q Consensus 328 ~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~ 400 (860)
|.++|+|..+.+.+...+.-.+...|++|||||++|++|++|--|.||.+..++.+..=.+|++.|..++|.
T Consensus 312 -GfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 312 -GFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred -ceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999988887777778889999999999999999999999999999999999999999999999998
No 242
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=99.63 E-value=1.4e-15 Score=126.48 Aligned_cols=107 Identities=38% Similarity=0.630 Sum_probs=101.7
Q ss_pred CChHHHHHHhHhcCCCccchhcccCCHHHHHHHHHHHHhhhc--cCCChhhHHHHHHHHHHHHhhhhhhcccchhHHHHH
Q 038577 750 NEDNLIKKCIFAISPVDIPAVASSIPYRYMQRLIEALSDLLE--SCPHLEFMLRWCQELCKTHGNTIQQNSRNLLPSLKS 827 (860)
Q Consensus 750 ~~~~~~~~~l~~~~~~~i~~~~~~l~~~~~~~ll~~l~~~l~--~~~~~~~~~~~l~~~l~~H~~~l~~~~~~~~~~l~~ 827 (860)
||.+++.++++++|+++|+.+++.||+.++..||++|..+++ +.+++|++..|++++|+.||++|++.+.++++.|..
T Consensus 1 Nd~~ll~~vl~~~~~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~ 80 (110)
T PF04003_consen 1 NDEELLLEVLERIPPSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRS 80 (110)
T ss_pred CHHHHHHHHHhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 678999999999999999999999999999999999999887 567999999999999999999999983499999999
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHhhc
Q 038577 828 LQKSITRIHQDLADTCSSNEYMLQYLCSV 856 (860)
Q Consensus 828 l~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 856 (860)
|++.++++.+.+.++++.|.+.|+|+.+.
T Consensus 81 L~~~l~~~~~~l~~l~~~n~~~L~~l~~q 109 (110)
T PF04003_consen 81 LQKILRERLQNLSKLLDLNLGRLDYLLSQ 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 99999999999999999999999999874
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.63 E-value=6.1e-12 Score=124.71 Aligned_cols=264 Identities=11% Similarity=0.058 Sum_probs=182.5
Q ss_pred CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEc---------cCCcEEEEEccCceEEEEecCcc-------
Q 038577 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCA---------KLGQLLVWEWRSESYILKQQGHY------- 349 (860)
Q Consensus 286 g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---------~~g~i~v~d~~~~~~~~~~~~~~------- 349 (860)
+.|.+.|..+++.+..+.....+-. + ++|||+.+.++.. ++..|.+||..+.+.+.++....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998887765543 4 9999999999998 78999999999999998875321
Q ss_pred cCeEEEEEcCCCCEEEEEe-C-CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577 350 FDVNCLAYSPDSQLLATGA-D-DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427 (860)
Q Consensus 350 ~~v~~~~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 427 (860)
.....++++|||+++++.. . ++.|.+.|+.+++.+.++.. |++..++..+.++....
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~---------- 163 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMH---------- 163 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEE----------
Confidence 2234789999999998766 3 68999999999998887764 45444444443332211
Q ss_pred EeeCCCCCcEEEEEECCCCCEEEEEecCCCe-----EEEEECCCCceEEEecCcccCeEEEEEcC-CCCEEEEEeCCCcE
Q 038577 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFE-----IFVWSMKTGRLLDILSGHEGPVHGLVFSP-TNATLASSSWDKTV 501 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----i~v~d~~~~~~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i 501 (860)
+.||..+.+...+.+. ..+++... .+ . ...+ .|++ +|+++..... |+|
T Consensus 164 ---------------~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~-~~--v---~~rP----~~~~~dg~~~~vs~e-G~V 217 (352)
T TIGR02658 164 ---------------CRDGSLAKVGYGTKGNPKIKPTEVFHPED-EY--L---INHP----AYSNKSGRLVWPTYT-GKI 217 (352)
T ss_pred ---------------eecCceEEEEecCCCceEEeeeeeecCCc-cc--c---ccCC----ceEcCCCcEEEEecC-CeE
Confidence 1222222222222111 22222110 00 0 0112 4455 7777776665 999
Q ss_pred EEEEccCCcc----eeEEcc--------cCCCeEEEEEeeCCCEEEEEe----------CCCeEEEEeCCCCceeEEEec
Q 038577 502 RLWNVFEGKG----SVESFP--------HTHDVLTVVYRPDGRQLACST----------LDGQIHFWDPLNGELMYTIEG 559 (860)
Q Consensus 502 ~iwd~~~~~~----~~~~~~--------~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~ 559 (860)
.+.|+..... ...... ..+...-++++|+++.+++.. ..+.|.++|..+++.+..+..
T Consensus 218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred EEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 9999644321 111111 233444599999999998853 224799999999999999886
Q ss_pred ccccCCCccccccccccccCCCCcEEEEEEecCCC-EEEEec-CCCeEEEEECCCceEEEEE
Q 038577 560 RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS-YILAGG-SSKYICMYDVADQVLLRRF 619 (860)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~-~dg~v~vwd~~~~~~~~~~ 619 (860)
... +..+++||||+ +|++.. .++.|.++|+.+++.++++
T Consensus 298 G~~---------------------~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 298 GHE---------------------IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCc---------------------eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 543 89999999999 877666 5788999999999999876
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.3e-13 Score=136.15 Aligned_cols=281 Identities=15% Similarity=0.202 Sum_probs=204.9
Q ss_pred CCCceEEEEecCCCCEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE
Q 038577 263 APSKVTACDYHRGLDMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY 341 (860)
Q Consensus 263 ~~~~v~~~~~~~~~~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~ 341 (860)
++...+.+..+|||++++ +|...-.|++||+.+......-......|.-.-.+.|-..++.-..+ ..|.+-..-....
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~D-R~IefHak~G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQND-RTIEFHAKYGRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecC-ceeeehhhcCeee
Confidence 556678899999999865 77788999999997766554444444556655566665555555443 4444432211111
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF 421 (860)
Q Consensus 342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 421 (860)
...++ ..-..++++.-..-|..++....|+-++++.|.-+..+....+.++++.+++-...|++|+.+|.|.+||.+
T Consensus 129 ~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeecC---cCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 11111 122345554433334445555689999999999999999888999999999988899999999999999998
Q ss_pred ccceeeEeeCCCC----------CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec-CcccCeEEEEEcCC--
Q 038577 422 RYRNFRTFTTPSS----------RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPVHGLVFSPT-- 488 (860)
Q Consensus 422 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~s~~-- 488 (860)
+......+..... ..++++.|+.+|-.+++|+..| .+++||+++.+++..-. +..-+|..+.|.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G-~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG-SVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC-cEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 8776666554322 3489999999999999999999 99999999988775543 33568889999775
Q ss_pred CCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 489 NATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 489 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
+..+++. ....++|||-.+++ ..........+..+++-|++.+++++-.++.+..|=+..
T Consensus 285 q~~v~S~-Dk~~~kiWd~~~Gk-~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWDECTGK-PMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEec-chHHhhhcccccCC-ceeeccccCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 3456554 35779999999998 444555566699999999999999999988887776554
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=1e-13 Score=147.06 Aligned_cols=239 Identities=16% Similarity=0.143 Sum_probs=159.9
Q ss_pred CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577 74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW 149 (860)
Q Consensus 74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 149 (860)
..|.+||...........+...+.+.+|||||+.||+.. ...|++||+.+++. ..+....+.+.+.+|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--------~~l~~~~g~~~~~~~ 247 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--------RVVANFKGSNSAPAW 247 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--------EEeecCCCCccceEE
Confidence 467777875444444445778899999999999999873 24699999998863 334444556678999
Q ss_pred cCCCCeEEE-eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-CccEEEeeecCCC
Q 038577 150 SPDSNYLLV-GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMFSWGFSGND 227 (860)
Q Consensus 150 s~d~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~~~ 227 (860)
+|||+.|+. .+.+|...+|.++.. . .....+..+........|+|||+ .|+..+. +|...+|.+....
T Consensus 248 SPDG~~la~~~~~~g~~~Iy~~d~~-~----~~~~~lt~~~~~~~~~~wSpDG~-----~l~f~s~~~g~~~Iy~~~~~~ 317 (427)
T PRK02889 248 SPDGRTLAVALSRDGNSQIYTVNAD-G----SGLRRLTQSSGIDTEPFFSPDGR-----SIYFTSDRGGAPQIYRMPASG 317 (427)
T ss_pred CCCCCEEEEEEccCCCceEEEEECC-C----CCcEECCCCCCCCcCeEEcCCCC-----EEEEEecCCCCcEEEEEECCC
Confidence 999988874 577888778776543 1 12445555666667789999998 7776554 5677777665321
Q ss_pred CCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEEEEee
Q 038577 228 GKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIHLLSI 304 (860)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~~~~~ 304 (860)
. ... ...+. ........|+|+|+.++..+.++ .|.+|++.+++..... .
T Consensus 318 g----------------------~~~---~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~ 369 (427)
T PRK02889 318 G----------------------AAQ---RVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-D 369 (427)
T ss_pred C----------------------ceE---EEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-C
Confidence 1 000 00111 12234578999999999777654 6999999877654332 2
Q ss_pred cCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEEEEcCC
Q 038577 305 SREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCLAYSPD 360 (860)
Q Consensus 305 ~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 360 (860)
. .......|+|||+.++++....|. +.+.+. ++.....+..+.+.+...+|+|-
T Consensus 370 ~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 370 T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred C-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 2 234678999999999999876554 445555 34445555556666777788763
No 246
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.6e-13 Score=135.59 Aligned_cols=280 Identities=15% Similarity=0.191 Sum_probs=208.9
Q ss_pred ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 386 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 386 (860)
...+.+..+|||+++++++.....|++||+..-.....-......|.-.-++.|-..++.-..|.+|.+-.. .|.....
T Consensus 52 ~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~hy~~ 130 (703)
T KOG2321|consen 52 TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGRHYRT 130 (703)
T ss_pred cccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhh-cCeeeee
Confidence 456789999999999999888899999999887665543333444555555666666666677777766542 2222211
Q ss_pred eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC
Q 038577 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466 (860)
Q Consensus 387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~ 466 (860)
- -...-.+++++.-..-|++++....|+-+++..++-+..+.... ..+.++.+++...+|++|+.++ .+..||.+.
T Consensus 131 R--IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~-~~lN~v~in~~hgLla~Gt~~g-~VEfwDpR~ 206 (703)
T KOG2321|consen 131 R--IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS-GELNVVSINEEHGLLACGTEDG-VVEFWDPRD 206 (703)
T ss_pred e--cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccc-ccceeeeecCccceEEecccCc-eEEEecchh
Confidence 1 11223456665444446666666789999999999888877654 4789999999999999999998 999999998
Q ss_pred CceEEEec------Cccc-----CeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCCeEEEEEeeC--CC
Q 038577 467 GRLLDILS------GHEG-----PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHDVLTVVYRPD--GR 532 (860)
Q Consensus 467 ~~~~~~~~------~h~~-----~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~--~~ 532 (860)
...+..+. .|.+ .|+++.|+.+|-.+++|+.+|.|.|||+++.+++.... ....+|..+.|-+. +.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCc
Confidence 76665553 2333 39999999999999999999999999999987544322 45567899999775 34
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577 533 QLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD 612 (860)
Q Consensus 533 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~ 612 (860)
.+++. +...++|||-.+|+....+....+ +..+|+-|++-+++++-+++.+..|=++.
T Consensus 287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~---------------------lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWDECTGKPMASIEPTSD---------------------LNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred eEEec-chHHhhhcccccCCceeeccccCC---------------------cCceeeecCCceEEEecCCCcceeEEccc
Confidence 45554 355699999999999998887765 89999999999999999888777776654
Q ss_pred c
Q 038577 613 Q 613 (860)
Q Consensus 613 ~ 613 (860)
-
T Consensus 345 L 345 (703)
T KOG2321|consen 345 L 345 (703)
T ss_pred c
Confidence 3
No 247
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.1e-13 Score=129.83 Aligned_cols=346 Identities=14% Similarity=0.125 Sum_probs=208.4
Q ss_pred EEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE--
Q 038577 34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-- 111 (860)
Q Consensus 34 i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-- 111 (860)
...|+-..+....+-...+-.-+-+.|||-|.||++--.. -|.+|--++-..++++.|++ |.-+.|||+.+||++-
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~ 269 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSP 269 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecC
Confidence 5677776654433322233345789999999999998765 48899877777777777765 8999999999999986
Q ss_pred ----------eCCeEEEEeCCCCCcccceeEEEEEeec---cCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcc
Q 038577 112 ----------TGKLVQIWRSPGFKKEVFAFELIRTLAD---CNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH 178 (860)
Q Consensus 112 ----------~~~~i~iwd~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 178 (860)
....++|||+.+|.. .+.+.. ....-.-..||.|++++|--..+ .|.||+...-
T Consensus 270 ~p~~~~~~d~e~~~l~IWDI~tG~l-------krsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf----- 336 (698)
T KOG2314|consen 270 EPIIVEEDDNEGQQLIIWDIATGLL-------KRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF----- 336 (698)
T ss_pred CccccCcccCCCceEEEEEccccch-------hcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce-----
Confidence 125899999999973 333332 12222456899999999987764 7888886553
Q ss_pred cccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec
Q 038577 179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD 258 (860)
Q Consensus 179 ~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (860)
...-.-.-.-..|....|+|.+. .|+ .|..++...
T Consensus 337 -~lld~Kslki~gIr~FswsP~~~-----llA---------Ywtpe~~~~------------------------------ 371 (698)
T KOG2314|consen 337 -MLLDKKSLKISGIRDFSWSPTSN-----LLA---------YWTPETNNI------------------------------ 371 (698)
T ss_pred -eeecccccCCccccCcccCCCcc-----eEE---------EEcccccCC------------------------------
Confidence 11111111234455666776654 332 232222110
Q ss_pred cccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577 259 DFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338 (860)
Q Consensus 259 ~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~ 338 (860)
-..+.+..+++.+.+++...+.-.-..+-|-.+|.+|++-...
T Consensus 372 --------------------------parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR----------- 414 (698)
T KOG2314|consen 372 --------------------------PARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDR----------- 414 (698)
T ss_pred --------------------------cceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEe-----------
Confidence 0123444444444444433332222233444455555432211
Q ss_pred ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC---CCcE
Q 038577 339 ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL---DGTV 415 (860)
Q Consensus 339 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~i 415 (860)
|.. .+ +.+.-..+.|+.++........-.-...|...+|-|.|+.+++.+. ..++
T Consensus 415 ---------~tK---------~~----~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 415 ---------HTK---------SK----VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTV 472 (698)
T ss_pred ---------ecc---------cc----ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccce
Confidence 110 00 1122234666766655443333345678899999999987775543 3468
Q ss_pred EEEEccc-cceeeEeeCCCCCcEEEEEECCCCCEEEEEecC--CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577 416 RAWDLFR-YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD--SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492 (860)
Q Consensus 416 ~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 492 (860)
.+|.+.+ ......+..-.....+.+.++|.|++++++.-. ++.+..+|+.-......-.......+.+.|.|.|+|+
T Consensus 473 sfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYV 552 (698)
T ss_pred eEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEE
Confidence 8898873 332222222233467889999999999887654 4589999988533322221122345778999999999
Q ss_pred EEEeCC
Q 038577 493 ASSSWD 498 (860)
Q Consensus 493 ~s~~~d 498 (860)
++++.-
T Consensus 553 vT~ss~ 558 (698)
T KOG2314|consen 553 VTSSSS 558 (698)
T ss_pred EEeeeh
Confidence 998753
No 248
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.62 E-value=3.7e-11 Score=123.68 Aligned_cols=279 Identities=15% Similarity=0.134 Sum_probs=188.6
Q ss_pred EEEEEcC----CeEEEEEC--CCceeEEEE-eecCceeEEEEEeeCCCEEEEEEc---cCCcEEEEEccCc--e--EEEE
Q 038577 279 VVVGFSN----GVFGLYQM--PDFVCIHLL-SISREKITTAVFNELGNWLVFGCA---KLGQLLVWEWRSE--S--YILK 344 (860)
Q Consensus 279 l~~~~~~----g~i~~~~~--~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~---~~g~i~v~d~~~~--~--~~~~ 344 (860)
+++|+.. +.|.+|++ .+++....- .........++++|+++.|.++.. ..|.|..|.+... . .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4455554 67888877 444433221 123446678999999999999987 4689999998764 2 3333
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC-CeeEEE---ee----------cCCCceEEEEEeeCCCEEEEE
Q 038577 345 QQGHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSS-GFCFVT---FT----------EHTNAVTALHFMANNHSLLSA 409 (860)
Q Consensus 345 ~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~i~~~~~~~~l~s~ 409 (860)
..........++++|++++++++.. +|.|.++++.. +..... +. .......++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3323445678999999999988864 89999999986 433322 11 123457899999999988876
Q ss_pred eC-CCcEEEEEccccc--e--eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC--CCce--EEEecCc----
Q 038577 410 SL-DGTVRAWDLFRYR--N--FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK--TGRL--LDILSGH---- 476 (860)
Q Consensus 410 ~~-dg~i~~wd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~--~~~~--~~~~~~h---- 476 (860)
.. ...|.+|++.... . ...+..+.......++|+|+++++++.....+.|.+|++. ++.. +..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 43 3479999997654 2 3445667777889999999999999988877799999988 4432 2222211
Q ss_pred --ccCeEEEEEcCCCCEEEEEe-CCCcEEEEEccC--Ccce--eEEcccCCCeEEEEEeeCCCEEEEEe-CCCeEEEEeC
Q 038577 477 --EGPVHGLVFSPTNATLASSS-WDKTVRLWNVFE--GKGS--VESFPHTHDVLTVVYRPDGRQLACST-LDGQIHFWDP 548 (860)
Q Consensus 477 --~~~v~~l~~s~~~~~l~s~~-~dg~i~iwd~~~--~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~ 548 (860)
......|+++|||++|.++. .++.|.+|++.. +... ..........+.++++|+|++|+++. .++.|.+|++
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 12578899999999987765 467899999943 3311 12222344589999999999999887 4568999865
Q ss_pred --CCCceeEEE
Q 038577 549 --LNGELMYTI 557 (860)
Q Consensus 549 --~~~~~~~~~ 557 (860)
.+|.+...-
T Consensus 322 d~~tG~l~~~~ 332 (345)
T PF10282_consen 322 DPDTGKLTPVG 332 (345)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCcEEEec
Confidence 566655443
No 249
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.1e-13 Score=145.53 Aligned_cols=233 Identities=13% Similarity=0.045 Sum_probs=160.1
Q ss_pred CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577 74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW 149 (860)
Q Consensus 74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 149 (860)
..|.+||...........+...+.+.+|||||+.||.. .+..|++||+.+++. ..+..+.+.+...+|
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--------~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--------ELVGNFPGMTFAPRF 253 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--------EEeecCCCcccCcEE
Confidence 37889998766655555578899999999999999987 346899999988762 445566777889999
Q ss_pred cCCCCeEE-EeecCCe--EEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-Cc--cEEEeee
Q 038577 150 SPDSNYLL-VGSKDLA--VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DC--YMFSWGF 223 (860)
Q Consensus 150 s~d~~~l~-s~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg--~i~~w~~ 223 (860)
+|||+.|+ +.+.++. |.+||+.++ ....+..+........|+||++ .|+..+. +| .|+++++
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~-------~~~~Lt~~~~~~~~~~~spDG~-----~i~f~s~~~g~~~Iy~~d~ 321 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSG-------TTTRLTDSPAIDTSPSYSPDGS-----QIVFESDRSGSPQLYVMNA 321 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCC-------ceEEccCCCCccCceeEcCCCC-----EEEEEECCCCCCeEEEEEC
Confidence 99998876 4455555 666677665 2345566666677889999998 7776663 33 5677776
Q ss_pred cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEE
Q 038577 224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIH 300 (860)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~ 300 (860)
.++.. ..+......+....|+|+|+.++....+ ..|.+|++..+. ..
T Consensus 322 ~g~~~-----------------------------~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~ 371 (435)
T PRK05137 322 DGSNP-----------------------------RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ER 371 (435)
T ss_pred CCCCe-----------------------------EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eE
Confidence 55321 0111123345667899999999876654 368888875544 33
Q ss_pred EEeecCceeEEEEEeeCCCEEEEEEccC-----CcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577 301 LLSISREKITTAVFNELGNWLVFGCAKL-----GQLLVWEWRSESYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~-----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 359 (860)
.+.. ...+....|+|||+.+++..... ..+.++|+..+... .+. ....+...+|+|
T Consensus 372 ~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 372 ILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP-TPGDASDPAWSP 432 (435)
T ss_pred eccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ecc-CCCCccCcccCC
Confidence 3332 23567889999999999877643 25777887665443 333 233456667765
No 250
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=2.2e-13 Score=145.16 Aligned_cols=234 Identities=15% Similarity=0.114 Sum_probs=158.5
Q ss_pred CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577 74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW 149 (860)
Q Consensus 74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 149 (860)
.+|.+||...+.......+...+.+.+|+|||+.|++.. ...|++||+.+++. ..+..+.+...+++|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--------~~l~~~~g~~~~~~~ 255 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--------ELVASFRGINGAPSF 255 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--------EEeccCCCCccCceE
Confidence 468999987665555555778899999999999999873 34799999988763 334444555668899
Q ss_pred cCCCCeEEE-eecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCcc--EEEeee
Q 038577 150 SPDSNYLLV-GSKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCY--MFSWGF 223 (860)
Q Consensus 150 s~d~~~l~s-~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~--i~~w~~ 223 (860)
+|||+.|+. .+.+| .|.+||+.++ ....+..+........|+||++ .|+..+ .+|. ++++++
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g-------~~~~lt~~~~~~~~~~~spDG~-----~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSR-------QLTRLTNHFGIDTEPTWAPDGK-----SIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCC-------CeEECccCCCCccceEECCCCC-----EEEEEECCCCCceEEEEEC
Confidence 999987764 45555 5888998776 2344555655567789999998 777665 4455 555555
Q ss_pred cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEE
Q 038577 224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIH 300 (860)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~ 300 (860)
.++.. . ...+ ........+|+|+|+.++....++ .|.+|++.+++..
T Consensus 324 ~~g~~------------------------~---~lt~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~- 373 (433)
T PRK04922 324 SGGSA------------------------E---RLTF--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR- 373 (433)
T ss_pred CCCCe------------------------E---Eeec--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-
Confidence 44321 0 0011 122344689999999998776543 6899999777654
Q ss_pred EEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577 301 LLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRSESYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 359 (860)
.+... .......|+|||+.+++..... +.|.+++... .....+..+.+.+...+|+|
T Consensus 374 ~Lt~~-~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 374 TLTPG-SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 33322 2345679999999999887653 3577777754 34444545556677777776
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=5.5e-11 Score=122.41 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=170.3
Q ss_pred CCceEEEEecCCCCEEEEEEc----CCeEEEEECCCc----eeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE
Q 038577 264 PSKVTACDYHRGLDMVVVGFS----NGVFGLYQMPDF----VCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE 335 (860)
Q Consensus 264 ~~~v~~~~~~~~~~~l~~~~~----~g~i~~~~~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d 335 (860)
......++++|++++|++... +|.|..|.+... +.+............++++|++++++++...+|.+.+++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 345677889999999998887 479999988653 233444434556678999999999999998889999999
Q ss_pred ccC-ceEEEE---ec----------CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCe--eE--EEe-ecCCCceE
Q 038577 336 WRS-ESYILK---QQ----------GHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGF--CF--VTF-TEHTNAVT 395 (860)
Q Consensus 336 ~~~-~~~~~~---~~----------~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~--~~--~~~-~~~~~~v~ 395 (860)
+.. +..... .. .......++.++|+|+++++... ...|.+|++.... .. ..+ .......+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 333222 10 12245789999999998887654 4579999987654 21 222 23456789
Q ss_pred EEEEeeCCCEEEEEe-CCCcEEEEEcc--ccc--eeeEeeCC-----CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577 396 ALHFMANNHSLLSAS-LDGTVRAWDLF--RYR--NFRTFTTP-----SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 396 ~i~~~~~~~~l~s~~-~dg~i~~wd~~--~~~--~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
.+.|+|++++++... .++.|.++++. ++. ....+... .......++++|||++|+++......|.+|++.
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999998876554 57789999988 332 22222211 112578899999999999998887799999993
Q ss_pred --CCce--EEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcc
Q 038577 466 --TGRL--LDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVF 507 (860)
Q Consensus 466 --~~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~ 507 (860)
++++ +..+.........++++|+|++|+++.. ++.|.+|++.
T Consensus 276 ~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 276 PATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3443 3344433445899999999999988874 6789999875
No 252
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.59 E-value=2.1e-13 Score=125.97 Aligned_cols=157 Identities=24% Similarity=0.367 Sum_probs=114.3
Q ss_pred EEEEECCCCCEEEEEecC---C------CeEEEEECCC-CceEEEecC-cccCeEEEEEcCCCCEEEEE--eCCCcEEEE
Q 038577 438 VSLASDQSGEVICAGTLD---S------FEIFVWSMKT-GRLLDILSG-HEGPVHGLVFSPTNATLASS--SWDKTVRLW 504 (860)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~---~------~~i~v~d~~~-~~~~~~~~~-h~~~v~~l~~s~~~~~l~s~--~~dg~i~iw 504 (860)
..+.|+++|.+|++-... . +...+|.++. +.....+.- ..++|.+++|+|+|+.+|+. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 567889999888775541 0 1344444422 233444432 45679999999999987654 457899999
Q ss_pred EccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC---CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCC
Q 038577 505 NVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL---DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSG 581 (860)
Q Consensus 505 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (860)
|++ .+.+..+ +...+..+.|||+|++|++++. .|.|.+||.++.+.+......
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--------------------- 144 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--------------------- 144 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC---------------------
Confidence 996 4334433 3567789999999999999874 467999999988888776543
Q ss_pred CcEEEEEEecCCCEEEEecC------CCeEEEEECCCceEEEEEe
Q 038577 582 KCFTTLCYSADGSYILAGGS------SKYICMYDVADQVLLRRFQ 620 (860)
Q Consensus 582 ~~i~~l~~s~~g~~l~~~~~------dg~v~vwd~~~~~~~~~~~ 620 (860)
.++.++|||||++|+++.. |..++||+.. |+++.+..
T Consensus 145 -~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 145 -DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred -cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 2789999999999998864 6789999985 66666544
No 253
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=2.7e-14 Score=140.03 Aligned_cols=235 Identities=18% Similarity=0.247 Sum_probs=171.4
Q ss_pred eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECC--CCCEEEEEecCCCeEE
Q 038577 383 CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ--SGEVICAGTLDSFEIF 460 (860)
Q Consensus 383 ~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~ 460 (860)
...++.+|.+-|.++.|+.+|.+|++|+.|-.+.|||....+....+...+...|.++.|-| ..+.+++|..|. .|+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk-~i~ 120 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK-LIK 120 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcc-eEE
Confidence 34578899999999999999999999999999999999999999999999999999999987 456778888888 999
Q ss_pred EEECCCC----------ceEEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeE----------EcccC
Q 038577 461 VWSMKTG----------RLLDILSGHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVE----------SFPHT 519 (860)
Q Consensus 461 v~d~~~~----------~~~~~~~~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~ 519 (860)
+||+... +....+..|...|..++-.|++ ..+.++++||+++-+|++....... ....-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999842 3445667899999999999998 6788999999999999987432211 11223
Q ss_pred CCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCCceeEEEeccc--ccC-C---Cccc---ccccccc---ccCCCCcEEE
Q 038577 520 HDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNGELMYTIEGRR--DIS-G---GRLM---TDRRSAA---NSSSGKCFTT 586 (860)
Q Consensus 520 ~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~-~---~~~~---~~~~~~~---~~~~~~~i~~ 586 (860)
-...++..+| +..+||+|+.|-..++||.+.. +..+.... ... . +... ....... .......++.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 4567899999 4568999999999999995321 11111100 000 0 0000 0000000 0001124688
Q ss_pred EEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577 587 LCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ 620 (860)
Q Consensus 587 l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~ 620 (860)
+.|+|+|.-|++.-....|+++|+..++....+-
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 8999999987777666789999999987665443
No 254
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.59 E-value=5.5e-10 Score=127.09 Aligned_cols=422 Identities=13% Similarity=0.129 Sum_probs=254.1
Q ss_pred cCCCeEEEEEcCCCCeEEEeecCCeEEEE----eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC
Q 038577 140 CNDKVTALNWSPDSNYLLVGSKDLAVRLF----YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD 215 (860)
Q Consensus 140 h~~~v~~l~~s~d~~~l~s~~~dg~v~vw----d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d 215 (860)
..+.|.++.|.+|...++.+..+|.|.+. +.... .......-...|.+++||||+. .|+..+.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-------~~E~VG~vd~GI~a~~WSPD~E-----lla~vT~~ 141 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-------EIEIVGSVDSGILAASWSPDEE-----LLALVTGE 141 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-------eeEEEEEEcCcEEEEEECCCcC-----EEEEEeCC
Confidence 45779999999999999999999999999 44333 3344445677999999999999 99999989
Q ss_pred ccEEEeeecCC----CCCCccccCCCCCC----------CCCCCcce----eeeEEe--eeeccccCCCCceEEEEecCC
Q 038577 216 CYMFSWGFSGN----DGKIDETMEDSEPP----------SPGTPERR----VKKWGL--LRKDDFSQAPSKVTACDYHRG 275 (860)
Q Consensus 216 g~i~~w~~~~~----~~~~~~~~~~~~~~----------~~~~~~~~----~~~~~~--~~~~~~~~~~~~v~~~~~~~~ 275 (860)
+++.+-+.+-. .............. -.+...+. .+.-.. .....+. ....-..++|-.|
T Consensus 142 ~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGD 220 (928)
T PF04762_consen 142 GNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGD 220 (928)
T ss_pred CEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCC
Confidence 88877643211 00000000000000 00000000 000000 0011222 4456788999999
Q ss_pred CCEEEEEEc---C---CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC--CcEEEEEccC---ceEEEE
Q 038577 276 LDMVVVGFS---N---GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL--GQLLVWEWRS---ESYILK 344 (860)
Q Consensus 276 ~~~l~~~~~---~---g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~--g~i~v~d~~~---~~~~~~ 344 (860)
|.++|+.+. . ..+++|+-+ |....+-..-.+--.+++|.|.|+.++++.... ..|.+|+-.. ++....
T Consensus 221 G~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~ 299 (928)
T PF04762_consen 221 GEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLR 299 (928)
T ss_pred CcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecC
Confidence 999998875 2 579999985 554444443344456889999999999887632 3456665332 222222
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEeec-CCCceEEEEEeeCC-CEEEEEeCCCcEEEEEc
Q 038577 345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF--CFVTFTE-HTNAVTALHFMANN-HSLLSASLDGTVRAWDL 420 (860)
Q Consensus 345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~-~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~ 420 (860)
+......|..+.|++|+..||....| .|.+|...+.. ..+++.. ....+..+.|+|.. ..|.....+|.+..+++
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 22445679999999999999998766 49999987653 2333332 23345569999954 55777777788877665
Q ss_pred cccceeeEeeCCCCCcEEEEEEC----CCC-CEEEEEecCCCeEEEEECCCCce-----EEEecCcccCeEEEEEcCCCC
Q 038577 421 FRYRNFRTFTTPSSRQFVSLASD----QSG-EVICAGTLDSFEIFVWSMKTGRL-----LDILSGHEGPVHGLVFSPTNA 490 (860)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~l~~~~~~~~~i~v~d~~~~~~-----~~~~~~h~~~v~~l~~s~~~~ 490 (860)
.- .+..+ |+. ..+++. ||..+.+-.++..-. ...+. -..+|.+++|++++.
T Consensus 379 ~~----------------~v~~s~~~~~~D~g~vaVI--DG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 379 AW----------------DVSRSPGSSPNDNGTVAVI--DGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS 439 (928)
T ss_pred EE----------------EEEecCCCCccCceEEEEE--eCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC
Confidence 21 11111 111 122222 333677777664421 12233 357899999999998
Q ss_pred EEEEEeCCCcEEEEEccCCcce--------eEE----------cccCCCeEEEEEeeCCCEEEEEeCC---CeEEEEeCC
Q 038577 491 TLASSSWDKTVRLWNVFEGKGS--------VES----------FPHTHDVLTVVYRPDGRQLACSTLD---GQIHFWDPL 549 (860)
Q Consensus 491 ~l~s~~~dg~i~iwd~~~~~~~--------~~~----------~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~ 549 (860)
.+++-..||.+.+|........ ... ......+..++|..+...++....+ ..+.+++..
T Consensus 440 ~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred eEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEec
Confidence 8999999999999986443211 000 1134457888998887777666654 568888874
Q ss_pred CCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577 550 NGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVAD 612 (860)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~ 612 (860)
..+........... .+.+..+...++...++.-..+|.+...+...
T Consensus 520 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~ 565 (928)
T PF04762_consen 520 DSENSASVESSTEV-----------------DGVVLIISSSPDSGSLYIQTNDGKVFQLSSDG 565 (928)
T ss_pred cCCCceeEEEEecc-----------------CceEEEEeeCCCCcEEEEEECCCEEEEeecCC
Confidence 44322111111110 12345555555555455566677777555444
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.58 E-value=2e-11 Score=121.09 Aligned_cols=275 Identities=11% Similarity=0.109 Sum_probs=178.0
Q ss_pred CeEEEEECCCCcEEeecc-CCccCeeEEEEcCCCCEEEEEcC----------CCcEEEEEcccCeEEEEeecCCc-----
Q 038577 32 NRVSVTDLIKSKTVTLPV-ESSSNICRIAVSPDGTFLLTVDE----------NQRCHFINLHCHVVLHRVRFKYP----- 95 (860)
Q Consensus 32 ~~i~v~d~~~~~~~~~~~-~h~~~v~~va~spdg~~la~~~~----------d~~i~vwd~~~~~~~~~~~~~~~----- 95 (860)
++|.+.|..+++.+.... |... ..+ +||||+.|+++.. +..|.+||..+.+.+..+..+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 789999999999876543 3322 234 9999999887654 68999999999999999885333
Q ss_pred ---eeEEEECCCCCEEEEE--e-CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577 96 ---VNAILFSPNGKYIAVG--T-GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY 169 (860)
Q Consensus 96 ---v~~~~fspdg~~la~~--~-~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd 169 (860)
-..+++||||++|.+. . ++.|.+.|+.+++. +..+.- .+...-...+++..+ +-+.||......
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-------v~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~~~~v~ 173 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-------VRMMDV-PDCYHIFPTANDTFF--MHCRDGSLAKVG 173 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-------EEEEeC-CCCcEEEEecCCccE--EEeecCceEEEE
Confidence 3389999999999987 3 79999999999873 444432 222222222222222 223455554444
Q ss_pred ecccccCcccccceEeecCCCcEEE-EEEcc-CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577 170 VKEKLKGIHTNKPFLLLGHRDSVVG-CFFSV-DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER 247 (860)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~h~~~i~~-~~~~~-~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (860)
++...+. .......+.+...++.. -.|.+ ++. +++...+ |+|.+.|+.......
T Consensus 174 ~d~~g~~-~~~~~~vf~~~~~~v~~rP~~~~~dg~-----~~~vs~e-G~V~~id~~~~~~~~----------------- 229 (352)
T TIGR02658 174 YGTKGNP-KIKPTEVFHPEDEYLINHPAYSNKSGR-----LVWPTYT-GKIFQIDLSSGDAKF----------------- 229 (352)
T ss_pred ecCCCce-EEeeeeeecCCccccccCCceEcCCCc-----EEEEecC-CeEEEEecCCCccee-----------------
Confidence 4433111 00000111110111100 03455 676 6766666 999999976643211
Q ss_pred eeeeEEeeeeccc--cCCCCceEEEEecCCCCEEEEEE----------cCCeEEEEECCCceeEEEEeecCceeEEEEEe
Q 038577 248 RVKKWGLLRKDDF--SQAPSKVTACDYHRGLDMVVVGF----------SNGVFGLYQMPDFVCIHLLSISREKITTAVFN 315 (860)
Q Consensus 248 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~----------~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s 315 (860)
...|........ .-.++...-++++|+++++++.. ..+.|.++|..+++.+..+... ..+..++++
T Consensus 230 -~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS 307 (352)
T TIGR02658 230 -LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVS 307 (352)
T ss_pred -cceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEEC
Confidence 123333221110 11233445599999999998853 2258999999999999988765 488999999
Q ss_pred eCCC-EEEEEEccCCcEEEEEccCceEEEEe
Q 038577 316 ELGN-WLVFGCAKLGQLLVWEWRSESYILKQ 345 (860)
Q Consensus 316 ~~~~-~l~~~~~~~g~i~v~d~~~~~~~~~~ 345 (860)
||++ .++++...++.|.++|..+++.+...
T Consensus 308 ~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 308 QDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9999 77777766799999999999988876
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.57 E-value=6.5e-13 Score=142.62 Aligned_cols=218 Identities=20% Similarity=0.166 Sum_probs=150.6
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA 109 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la 109 (860)
.|.++|..++....+. .+...+...+|||||++||++... ..|++||+.+++......+...+.+++|+|||+.|+
T Consensus 171 ~l~~~d~~g~~~~~l~-~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTIT-RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEee-cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 5889998766555554 566678999999999999987643 579999999987665555667778899999999887
Q ss_pred EE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccccc
Q 038577 110 VG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 110 ~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~ 182 (860)
+. ....|++|++.++. ...+..+........|+|||+.|+..+. ++ .|.+|++.++ ..
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~--------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~-------~~ 314 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQ--------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG-------EV 314 (417)
T ss_pred EEECCCCCccEEEEECCCCC--------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC-------CE
Confidence 65 23469999998765 3445555555667899999998887654 33 5666776654 23
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcCCc---cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDC---YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg---~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
..+..+........|+|+++ +++..+.++ .|.+|++.++.. ....
T Consensus 315 ~~l~~~~~~~~~~~~spdg~-----~i~~~~~~~~~~~i~~~d~~~~~~------------------------~~l~--- 362 (417)
T TIGR02800 315 RRLTFRGGYNASPSWSPDGD-----LIAFVHREGGGFNIAVMDLDGGGE------------------------RVLT--- 362 (417)
T ss_pred EEeecCCCCccCeEECCCCC-----EEEEEEccCCceEEEEEeCCCCCe------------------------EEcc---
Confidence 34444556677889999998 888887765 778888765321 1110
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEEEE
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIHLL 302 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~~~ 302 (860)
. ........|+|+++.|+....++ .+.+.+. ++.....+
T Consensus 363 --~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 363 --D-TGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred --C-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 0 11223457999999988777654 3445454 33333333
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4e-11 Score=113.31 Aligned_cols=298 Identities=14% Similarity=0.168 Sum_probs=196.5
Q ss_pred CCeEEEEECCC--CcE-EeeccCCccCeeEEEEcCCCCEEEEEcC---CCcEEEEEccc--CeEE--EEee-cCCceeEE
Q 038577 31 GNRVSVTDLIK--SKT-VTLPVESSSNICRIAVSPDGTFLLTVDE---NQRCHFINLHC--HVVL--HRVR-FKYPVNAI 99 (860)
Q Consensus 31 ~~~i~v~d~~~--~~~-~~~~~~h~~~v~~va~spdg~~la~~~~---d~~i~vwd~~~--~~~~--~~~~-~~~~v~~~ 99 (860)
+..|.+|++.+ |+. ...+..+.+.++-++|+|++++|.++.. .|.|.-+.++. |+.- .... ...+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45699998874 333 2223367889999999999999988744 57888887764 4432 2222 34445899
Q ss_pred EECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCC----------eEEEEEcCCCCeEEEeec-CCeEE
Q 038577 100 LFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDK----------VTALNWSPDSNYLLVGSK-DLAVR 166 (860)
Q Consensus 100 ~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s~d~~~l~s~~~-dg~v~ 166 (860)
+++++|++|.++ ..+.|.++.+....... .......|.+. +.+..|.|++++|++..- --.|.
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~----~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQ----PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccc----cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 999999999999 77999999987632211 12223335554 889999999999998743 23699
Q ss_pred EEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-CccEEEeeecCCCCCCccccCCCCCCCCCCC
Q 038577 167 LFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCYMFSWGFSGNDGKIDETMEDSEPPSPGTP 245 (860)
Q Consensus 167 vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 245 (860)
+|+++.+ .........+ ........+.|+|+++ +.+..++ +++|.+|..+....+.....
T Consensus 171 ~y~~~dg--~L~~~~~~~v-~~G~GPRHi~FHpn~k-----~aY~v~EL~stV~v~~y~~~~g~~~~lQ----------- 231 (346)
T COG2706 171 LYDLDDG--KLTPADPAEV-KPGAGPRHIVFHPNGK-----YAYLVNELNSTVDVLEYNPAVGKFEELQ----------- 231 (346)
T ss_pred EEEcccC--cccccccccc-CCCCCcceEEEcCCCc-----EEEEEeccCCEEEEEEEcCCCceEEEee-----------
Confidence 9999966 2222222333 4556678899999999 8877775 89999999987422111000
Q ss_pred cceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-CeEEEEECCCc--ee--EEEEeecCceeEEEEEeeCCCE
Q 038577 246 ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-GVFGLYQMPDF--VC--IHLLSISREKITTAVFNELGNW 320 (860)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g~i~~~~~~~~--~~--~~~~~~~~~~i~~~~~s~~~~~ 320 (860)
.... ....+ ........+..+|+|++|.+.... ..|.+|.+... +. ......+....+...+++.|++
T Consensus 232 -----~i~t-lP~dF-~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 232 -----TIDT-LPEDF-TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred -----eecc-Ccccc-CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 0000 01112 233467888999999999887654 57778876532 21 2222333345788999999999
Q ss_pred EEEEEccCCcEEEEEccC--ceEEEEec-CcccCeEEEEEc
Q 038577 321 LVFGCAKLGQLLVWEWRS--ESYILKQQ-GHYFDVNCLAYS 358 (860)
Q Consensus 321 l~~~~~~~g~i~v~d~~~--~~~~~~~~-~~~~~v~~~~~s 358 (860)
|+++..++..+.+|.... |+...... .......|+.|.
T Consensus 305 Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 305 LIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 999999988899997654 44333222 233445566654
No 258
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.4e-12 Score=138.68 Aligned_cols=232 Identities=16% Similarity=0.134 Sum_probs=150.0
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA 109 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la 109 (860)
.|.++|........+. .+...+.+.+|||||+.||..+.+ ..|.+||+.+++........+.....+|||||+.|+
T Consensus 199 ~l~i~d~dG~~~~~l~-~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLL-RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEee-cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 5888898776555443 567789999999999999987542 368899998887644433455566889999999998
Q ss_pred EE--eCC--eEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCe--EEEEeecccccCcccccc
Q 038577 110 VG--TGK--LVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLA--VRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 110 ~~--~~~--~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~~ 182 (860)
.. .++ .|++||+.+++ ...+..+.......+|+|||+.|+..+. ++. |.++|+.++ . .
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g------~-~ 342 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG------K-V 342 (448)
T ss_pred EEEeCCCCeEEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC------C-E
Confidence 76 333 58888988775 3455566666788999999998877654 344 555555554 1 2
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcC-Ccc--EEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DCY--MFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg~--i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
..+..+........|+||++ +|+..+. ++. |.++|+.++.. ....
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~-----~l~~~~~~~g~~~I~~~dl~~g~~------------------------~~lt--- 390 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGR-----SMIMVNRTNGKFNIARQDLETGAM------------------------QVLT--- 390 (448)
T ss_pred EEEecCCCCCcCeeECCCCC-----EEEEEEecCCceEEEEEECCCCCe------------------------EEcc---
Confidence 22222222334568999998 7766654 444 44455554321 0000
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcC-C--eEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSN-G--VFGLYQMPDFVCIHLLSISREKITTAVFNE 316 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 316 (860)
.. .......|+|+|+.++....+ | .+.+++. ++.....+..+.+.+...+|+|
T Consensus 391 --~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 391 --ST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --CC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 00 011234799999998876654 3 3667776 5556666655555666677765
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.5e-12 Score=125.03 Aligned_cols=308 Identities=15% Similarity=0.154 Sum_probs=201.4
Q ss_pred CcEEEe-CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcC-----------CCcEEEEEccc
Q 038577 16 GNAVLS-QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDE-----------NQRCHFINLHC 83 (860)
Q Consensus 16 ~~~~~s-dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~-----------d~~i~vwd~~~ 83 (860)
..+.|| -|.||++-....|.+|--++-.....+ .|. .|.-+.|||+.+||++-+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 358899 999999998888999966655444443 464 4899999999999998642 26799999999
Q ss_pred CeEEEEeec---CCc-eeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577 84 HVVLHRVRF---KYP-VNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159 (860)
Q Consensus 84 ~~~~~~~~~---~~~-v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 159 (860)
|...+.+.. +.. -.-..||.|++++|--..+.|.||+.+.-. ++..-.-.-..|....|+|.++.||.-
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~-------lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFM-------LLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCcee-------eecccccCCccccCcccCCCcceEEEE
Confidence 999988873 122 235789999999999988999999887632 222222234568889999998888864
Q ss_pred ecC-----CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC----------ccEEEeeec
Q 038577 160 SKD-----LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD----------CYMFSWGFS 224 (860)
Q Consensus 160 ~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d----------g~i~~w~~~ 224 (860)
... ..+.+-.+.+. +...+..-|.-.=..+.|-.+|. +|+.--.. ..+-++.+.
T Consensus 365 tpe~~~~parvtL~evPs~------~~iRt~nlfnVsDckLhWQk~gd-----yLcvkvdR~tK~~~~g~f~n~eIfrir 433 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSK------REIRTKNLFNVSDCKLHWQKSGD-----YLCVKVDRHTKSKVKGQFSNLEIFRIR 433 (698)
T ss_pred cccccCCcceEEEEecCcc------ceeeeccceeeeccEEEeccCCc-----EEEEEEEeeccccccceEeeEEEEEee
Confidence 321 23555555544 23333333333333466667776 65543211 112233222
Q ss_pred CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCC-ceeE-
Q 038577 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPD-FVCI- 299 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~-~~~~- 299 (860)
.... ....-.-...|...+|-|.|+.+++-+.+ .++.+|.+.+ ....
T Consensus 434 eKdI----------------------------pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 434 EKDI----------------------------PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred ccCC----------------------------CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 2110 00111234568899999999998876554 6788887763 1111
Q ss_pred EEEeecCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 300 HLLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDN 371 (860)
Q Consensus 300 ~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 371 (860)
..........+.+.|+|.|+++++++-. .|.+..+|..-......-.......+.+.|.|.|+++++++...
T Consensus 486 lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred hhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehh
Confidence 1112233567889999999999887643 58999999875333222222223467789999999999988643
No 260
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=1.1e-12 Score=124.05 Aligned_cols=258 Identities=17% Similarity=0.255 Sum_probs=178.7
Q ss_pred CceEEEEecCCCCE--EEEEEcCCeEEEEECCCceeEEEE------eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577 265 SKVTACDYHRGLDM--VVVGFSNGVFGLYQMPDFVCIHLL------SISREKITTAVFNELGNWLVFGCAKLGQLLVWEW 336 (860)
Q Consensus 265 ~~v~~~~~~~~~~~--l~~~~~~g~i~~~~~~~~~~~~~~------~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~ 336 (860)
..+..++|..+++. +.....+..+..+..........+ .....+|..++.. | .+|+++.+ +|.+.+|..
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~-sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVS-SGNLQVRHD 132 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEec-CCcEEEEec
Confidence 45667777655543 333336666666666555444332 2333445444433 2 34444444 499999998
Q ss_pred cCce----EEEEecCcccCeEEEEEcCCCC-EEEEEeCC--CcEEEEECCCCeeEEEeecC---------CCceEEEEEe
Q 038577 337 RSES----YILKQQGHYFDVNCLAYSPDSQ-LLATGADD--NKVKVWTVSSGFCFVTFTEH---------TNAVTALHFM 400 (860)
Q Consensus 337 ~~~~----~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~iwd~~~~~~~~~~~~~---------~~~v~~i~~~ 400 (860)
+.+. .+..+..+ ..+..+.-++... ++++|+.. ..+.+||++..+.+..-+.- .-.++++.|.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8442 22222222 3455566565544 55568888 78999999988655543321 1235678888
Q ss_pred eC--CCEEEEEeCCCcEEEEEccccce-eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-ecCc
Q 038577 401 AN--NHSLLSASLDGTVRAWDLFRYRN-FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-LSGH 476 (860)
Q Consensus 401 ~~--~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~~~h 476 (860)
+. ...|++++.-+.+++||.+.++. +..+.. ....+.++...|+|+++++|...+ .+..||+++++.... +.+-
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g-~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKG-QLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccc-hhheecccCceeeccccCCc
Confidence 87 78999999999999999987654 444443 355889999999999999999998 999999999998877 8999
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEee
Q 038577 477 EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRP 529 (860)
Q Consensus 477 ~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~ 529 (860)
.+.|+++..+|.++++++++-|+.|||+|+.+.+.+.... -...++++.+.+
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 9999999999999999999999999999999865443322 233455555544
No 261
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.8e-12 Score=139.06 Aligned_cols=232 Identities=16% Similarity=0.102 Sum_probs=153.2
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIA 109 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la 109 (860)
.|.++|..++....+. .+...+...+|||||+.||+.+.+ ..|.+||+.+++........+.+...+|||||+.|+
T Consensus 180 ~l~~~d~~g~~~~~l~-~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLL-QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEe-cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEE
Confidence 4888898877665554 567789999999999999887543 469999999887655444556677899999999998
Q ss_pred EE--eC--CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccccc
Q 038577 110 VG--TG--KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 110 ~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~~~ 182 (860)
.. .+ ..|++||+.+++ ...+..+........|+|||+.++..+. +| .|.++++.++ . .
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~--------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g------~-~ 323 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQ--------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG------R-A 323 (430)
T ss_pred EEEccCCCceEEEEECCCCC--------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC------C-E
Confidence 65 23 378999998875 3445566666778899999998877654 33 4666666655 1 1
Q ss_pred eEeecCCCcEEEEEEccCCCCCccceEEEEcCC-c--cEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecc
Q 038577 183 FLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD-C--YMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDD 259 (860)
Q Consensus 183 ~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d-g--~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (860)
..+...........|+|+++ .++..+.+ + .|.+||+.++.. ....
T Consensus 324 ~~lt~~~~~~~~~~~Spdg~-----~i~~~~~~~~~~~l~~~dl~tg~~------------------------~~lt--- 371 (430)
T PRK00178 324 ERVTFVGNYNARPRLSADGK-----TLVMVHRQDGNFHVAAQDLQRGSV------------------------RILT--- 371 (430)
T ss_pred EEeecCCCCccceEECCCCC-----EEEEEEccCCceEEEEEECCCCCE------------------------EEcc---
Confidence 22222222334578999998 77766543 3 477778776432 0000
Q ss_pred ccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEECCCceeEEEEeecCceeEEEEEee
Q 038577 260 FSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQMPDFVCIHLLSISREKITTAVFNE 316 (860)
Q Consensus 260 ~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 316 (860)
.. .......|+|+|+.++....+ ..+.+++.. +.....+..+.+.+...+|+|
T Consensus 372 --~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 372 --DT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred --CC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 00 111245799999999876654 346666763 333444444444555566654
No 262
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.8e-12 Score=133.26 Aligned_cols=242 Identities=14% Similarity=0.050 Sum_probs=155.4
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEE---EEcCC--CcEEEEEcccCeEEEEeecCCceeEEEECCCCCE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLL---TVDEN--QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKY 107 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la---~~~~d--~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~ 107 (860)
.|.+.|..++..+.+. .....+...+|||||+.++ +...+ ..|.+.++.+++........+.....+|||||+.
T Consensus 166 ~l~~~d~dG~~~~~lt-~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNLRPLT-QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCceEcc-cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 6888899888776655 3455678889999998633 33333 4688889988876665556677778999999999
Q ss_pred EEEEeC--C--eE--EEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-cCCeEEEEeecccccCcccc
Q 038577 108 IAVGTG--K--LV--QIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-KDLAVRLFYVKEKLKGIHTN 180 (860)
Q Consensus 108 la~~~~--~--~i--~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~v~vwd~~~~~~~~~~~ 180 (860)
||...+ + .+ .+|++.++... . ......++.+.....+|+|||+.|+..+ .+|...+|.+...... .
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g-~---~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~ 317 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIG-K---PRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---Q 317 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCC-c---ceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---c
Confidence 998742 2 34 34676653110 0 1122223334456789999999888765 4666666655321001 1
Q ss_pred cceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee
Q 038577 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK 257 (860)
Q Consensus 181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (860)
....+..+...+....|+|||+ .|+..+.+ ..|.+||+.++..
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~-----~Laf~~~~~g~~~I~v~dl~~g~~----------------------------- 363 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGK-----KIAFCSVIKGVRQICVYDLATGRD----------------------------- 363 (428)
T ss_pred ceEEeccCCCCccceeECCCCC-----EEEEEEcCCCCcEEEEEECCCCCe-----------------------------
Confidence 2344555556677889999999 78766543 3688888877532
Q ss_pred ccccCCCCceEEEEecCCCCEEEEEEc---CCeEEEEECCCceeEEEEeecCceeEEEEEeeC
Q 038577 258 DDFSQAPSKVTACDYHRGLDMVVVGFS---NGVFGLYQMPDFVCIHLLSISREKITTAVFNEL 317 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 317 (860)
..+......+....|+|+|+.|+.... ...+.++++..++..... ...+.+...+|+|-
T Consensus 364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCC
Confidence 111111234567889999998886543 357888898776654433 34445666777764
No 263
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.6e-12 Score=122.75 Aligned_cols=252 Identities=12% Similarity=0.102 Sum_probs=181.4
Q ss_pred ceeEEEEEeeCCCEEE-EEEccCCcEEEEEccCceEEEEe------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 038577 307 EKITTAVFNELGNWLV-FGCAKLGQLLVWEWRSESYILKQ------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS 379 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~-~~~~~~g~i~v~d~~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 379 (860)
..+..++|..+++.=+ .+...+..+..+........... .....+|..++.. || .|++|-.+|.+.+|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEecc
Confidence 4566677766554332 22223344555554444333221 2234455555544 33 67888889999999987
Q ss_pred CCe----eEEEeecCCCceEEEEEeeCCC-EEEEEeCC--CcEEEEEccccceeeEeeCCC--------CCcEEEEEECC
Q 038577 380 SGF----CFVTFTEHTNAVTALHFMANNH-SLLSASLD--GTVRAWDLFRYRNFRTFTTPS--------SRQFVSLASDQ 444 (860)
Q Consensus 380 ~~~----~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~ 444 (860)
.+. .+..+..+ ..+..+.-++... .+++||.. ..+.+||+...+.+..-.... +..++.+.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 432 23333322 4555666666554 45568888 789999998875544333222 23456778877
Q ss_pred C--CCEEEEEecCCCeEEEEECCCC-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCC
Q 038577 445 S--GEVICAGTLDSFEIFVWSMKTG-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTH 520 (860)
Q Consensus 445 ~--~~~l~~~~~~~~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~ 520 (860)
. ...+++++.-+ ++++||.+.+ +++..+.--..+++++...|+++++++|..-|.+..||++.+..... +.+..+
T Consensus 213 g~~~~~fat~T~~h-qvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 213 GSPNYKFATITRYH-QVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCceEEEEecce-eEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 7 78888888887 9999999975 57788887889999999999999999999999999999999987766 557889
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577 521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD 562 (860)
Q Consensus 521 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 562 (860)
.++++..+|.++++|+++-|..++|+|+.+.+++........
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~ 333 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR 333 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc
Confidence 999999999999999999999999999999888877766543
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.53 E-value=6.7e-13 Score=123.00 Aligned_cols=337 Identities=17% Similarity=0.234 Sum_probs=224.4
Q ss_pred EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577 133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI 212 (860)
Q Consensus 133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~ 212 (860)
+++.++||.+.++....-|-..-+++.+.|.+++||--... .. .-+........+++++.+.++.. .|+.+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-~q---~wpsI~~~mP~~~~~~~y~~e~~-----~L~vg 86 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-GQ---YWPSIYHYMPSPCSAMEYVSESR-----RLYVG 86 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc-cc---cCchhhhhCCCCceEeeeeccce-----EEEEE
Confidence 57788999999999999898889999999999999976554 11 22333344567788999999988 99999
Q ss_pred cCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEE
Q 038577 213 ARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQ 292 (860)
Q Consensus 213 ~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~ 292 (860)
-..|++.-+.+...-. +.........|...+..+-|+-..+.+++.+.|..+.-.-
T Consensus 87 ~~ngtvtefs~sedfn------------------------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc 142 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFN------------------------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHC 142 (404)
T ss_pred EecceEEEEEhhhhhh------------------------hcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEe
Confidence 9999999887765322 0112344556788899999999889999998887766555
Q ss_pred CCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEc--cCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 293 MPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEW--RSESYILKQQGHYFDVNCLAYSPDSQLLATGADD 370 (860)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 370 (860)
.+.+..+..+.... ..+++.+.-. .+..+...|.+..-.+ ..-..+.++.+|.+.+.+++|.+....+.+|..|
T Consensus 143 ~e~~~~lg~Y~~~~-~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d 218 (404)
T KOG1409|consen 143 TESGNRLGGYNFET-PASALQFDAL---YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASD 218 (404)
T ss_pred eccCCcccceEeec-cCCCCceeeE---EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEecccc
Confidence 55444432221110 1111111111 2223333355555443 4456677889999999999999999999999999
Q ss_pred CcEEEEECCCCe-eEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC-----------------
Q 038577 371 NKVKVWTVSSGF-CFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP----------------- 432 (860)
Q Consensus 371 g~i~iwd~~~~~-~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~----------------- 432 (860)
..+.+||+.-++ ...++.+|...|..+...+--+.+++++.||.|.+|+.+..+....--..
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~ 298 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQ 298 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHH
Confidence 999999997543 34567789999999998888889999999999999998643321100000
Q ss_pred ----------------CCCcEEEEEECCCCCEEEEEecCCCeEEEEECC-------CCceEEEecCcccCeEEEEEcCCC
Q 038577 433 ----------------SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-------TGRLLDILSGHEGPVHGLVFSPTN 489 (860)
Q Consensus 433 ----------------~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-------~~~~~~~~~~h~~~v~~l~~s~~~ 489 (860)
....+...+-+....+...|..- .+++.|.- +..++..+..-...|+.+.+..+-
T Consensus 299 m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~--~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetl 376 (404)
T KOG1409|consen 299 MWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEF--SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETL 376 (404)
T ss_pred HHhhhhhhhhhhhhhhhhhhcCcccccCcccccccccee--EEEEecccchhhhcCCCCccccccccccceeEEEhhhhc
Confidence 00011111111111121112111 34444321 122344443334568888888888
Q ss_pred CEEEEEeCCCcEEEEEccC
Q 038577 490 ATLASSSWDKTVRLWNVFE 508 (860)
Q Consensus 490 ~~l~s~~~dg~i~iwd~~~ 508 (860)
.+|+|++.|+.|+|||+..
T Consensus 377 glLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 377 GLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cceeecCCceEEEEEechh
Confidence 8999999999999999864
No 265
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=1.2e-12 Score=120.93 Aligned_cols=146 Identities=18% Similarity=0.353 Sum_probs=107.9
Q ss_pred cEEEe-CCCEEEeeeC-----------CeEEEEEC--CCCcEEeeccCCccCeeEEEEcCCCCEEEEE--cCCCcEEEEE
Q 038577 17 NAVLS-QNTKLISPVG-----------NRVSVTDL--IKSKTVTLPVESSSNICRIAVSPDGTFLLTV--DENQRCHFIN 80 (860)
Q Consensus 17 ~~~~s-dg~~l~~~~~-----------~~i~v~d~--~~~~~~~~~~~h~~~v~~va~spdg~~la~~--~~d~~i~vwd 80 (860)
.+.++ +|++|++-.. +...+|.+ .......+.....+.|.+++|+|+|+.+|++ ..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 46677 9988887433 23445544 4444344433455679999999999988765 3567999999
Q ss_pred cccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeE
Q 038577 81 LHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYL 156 (860)
Q Consensus 81 ~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 156 (860)
++ ++.+..+. ...+..+.|||+|++||+++ .|.|.+||..+.+ .+.... | ..++.++|+|||+++
T Consensus 90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-------~i~~~~-~-~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-------KISTFE-H-SDATDVEWSPDGRYL 158 (194)
T ss_pred Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-------Eeeccc-c-CcEEEEEEcCCCCEE
Confidence 97 66666665 56788999999999999983 4689999999665 233332 3 357899999999999
Q ss_pred EEeec------CCeEEEEeeccc
Q 038577 157 LVGSK------DLAVRLFYVKEK 173 (860)
Q Consensus 157 ~s~~~------dg~v~vwd~~~~ 173 (860)
+++.. |..++||+....
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEeccceeccccEEEEEecCe
Confidence 99864 778999998654
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=2.6e-12 Score=119.10 Aligned_cols=325 Identities=14% Similarity=0.222 Sum_probs=204.4
Q ss_pred cCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeeccC------------CCeEEEEEcCCC--CeE
Q 038577 92 FKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLADCN------------DKVTALNWSPDS--NYL 156 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~s~d~--~~l 156 (860)
...-|.++.|...|.+||+| .+|.|.++.-...... .......+..|. ..|..+.|.+++ ..+
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~--ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG--EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeeccccccc--ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 34568999999999999999 7889999875543321 222334444453 357889999877 456
Q ss_pred EEeecCCeEEEEeecccccCc-------------------cc----------ccc-eEeecCCCcEEEEEEccCCCCCcc
Q 038577 157 LVGSKDLAVRLFYVKEKLKGI-------------------HT----------NKP-FLLLGHRDSVVGCFFSVDKKTDKV 206 (860)
Q Consensus 157 ~s~~~dg~v~vwd~~~~~~~~-------------------~~----------~~~-~~~~~h~~~i~~~~~~~~~~~~~~ 206 (860)
+..+.|.+|++|.+....... +. .+. .--..|...|.++.+..|.+
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E---- 177 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE---- 177 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc----
Confidence 677889999999987652111 00 000 01125778899999999987
Q ss_pred ceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeee--ccccCCCCceEEEEecCCC-CEEEEEE
Q 038577 207 NRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRK--DDFSQAPSKVTACDYHRGL-DMVVVGF 283 (860)
Q Consensus 207 ~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~l~~~~ 283 (860)
.++++ +|=.|.+|+++-... .+.+... .....-...|++..|+|.. +.++..+
T Consensus 178 -t~lSA-DdLRINLWnlei~d~----------------------sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 178 -TFLSA-DDLRINLWNLEIIDQ----------------------SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred -eEeec-cceeeeeccccccCC----------------------ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 55554 578999999875332 2333221 1122223458888999964 6778889
Q ss_pred cCCeEEEEECCCceeE------EE----------EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-CceEEEEec
Q 038577 284 SNGVFGLYQMPDFVCI------HL----------LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-SESYILKQQ 346 (860)
Q Consensus 284 ~~g~i~~~~~~~~~~~------~~----------~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-~~~~~~~~~ 346 (860)
..|+|++.|+.....- .. +..--..|..+.|+++|+++++-.. -+|++||+. ..+.+...+
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETYP 311 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceEEe
Confidence 9999999999732211 11 1111246888999999999987644 689999994 445555554
Q ss_pred Cccc---------------CeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-EEeecCCCc--eEEEEEeeCCCEEEE
Q 038577 347 GHYF---------------DVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF-VTFTEHTNA--VTALHFMANNHSLLS 408 (860)
Q Consensus 347 ~~~~---------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~--v~~i~~~~~~~~l~s 408 (860)
-|.. .-..++|+.++..++||+..+..++|+...|... .++...... +..+ ..-+.+.+
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~ 388 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKV---LKLRLVSS 388 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccc---ccceeeec
Confidence 4431 1245789999999999999999999997665432 222222111 1111 11223444
Q ss_pred EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577 409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW 462 (860)
Q Consensus 409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~ 462 (860)
++......+|- -.......+...+|+|..+.+|++..++ +++|
T Consensus 389 ~g~r~~~~~~v---------d~ldf~kkilh~aWhp~en~ia~aatnn--lyif 431 (433)
T KOG1354|consen 389 SGKRKRDEISV---------DALDFRKKILHTAWHPKENSIAVAATNN--LYIF 431 (433)
T ss_pred CCCcccccccc---------chhhhhhHHHhhccCCccceeeeeecCc--eEEe
Confidence 44333211110 0111223456778999999999988874 6665
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=3.8e-11 Score=126.47 Aligned_cols=226 Identities=9% Similarity=0.036 Sum_probs=144.8
Q ss_pred CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEE---EEeCCC--cEEEEECCCCeeEEEeecCCCceEEEEEeeCC
Q 038577 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLA---TGADDN--KVKVWTVSSGFCFVTFTEHTNAVTALHFMANN 403 (860)
Q Consensus 329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 403 (860)
..|.+.|...+... .+.........-+|+|||+.++ +...+| .|.+.++.+++.... ....+......|+|||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCC
Confidence 46777777655433 2333445567789999997532 343333 577888887754433 3344555678999999
Q ss_pred CEEEEEeC-CC----cEEEEEcccc--ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC--eEEEEECCC-CceEEEe
Q 038577 404 HSLLSASL-DG----TVRAWDLFRY--RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF--EIFVWSMKT-GRLLDIL 473 (860)
Q Consensus 404 ~~l~s~~~-dg----~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~i~v~d~~~-~~~~~~~ 473 (860)
+.|+..+. +| .+..|++..+ ...+.+...........+|+|||+.|+..+..++ .|+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 88886553 23 3444676653 2223333222223356799999998887764333 466666542 3334445
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeC---CCeEEEEe
Q 038577 474 SGHEGPVHGLVFSPTNATLASSSWD---KTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTL---DGQIHFWD 547 (860)
Q Consensus 474 ~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd 547 (860)
..+...+....|||||+.|+..+.+ ..|.+||+.+++. ..+......+....|+|||++|+.... ...|+++|
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 5455677889999999999877653 3699999988863 333333446778999999998876543 35689999
Q ss_pred CCCCceeEEE
Q 038577 548 PLNGELMYTI 557 (860)
Q Consensus 548 ~~~~~~~~~~ 557 (860)
+.+++.....
T Consensus 402 l~~g~~~~Lt 411 (428)
T PRK01029 402 LITKKTRKIV 411 (428)
T ss_pred CCCCCEEEee
Confidence 9887654444
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1e-11 Score=133.22 Aligned_cols=233 Identities=14% Similarity=0.152 Sum_probs=151.6
Q ss_pred cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577 75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS 150 (860)
Q Consensus 75 ~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 150 (860)
.|.++|...+.......+...+...+|||||+.||... ...|.+|++.+++. ..+....+.+...+|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--------~~l~~~~g~~~~~~~S 251 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--------EQITNFEGLNGAPAWS 251 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--------EEccCCCCCcCCeEEC
Confidence 47888888666555556778899999999999998872 24799999988763 3334344556679999
Q ss_pred CCCCeEEE-eecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-Cc--cEEEeeec
Q 038577 151 PDSNYLLV-GSKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DC--YMFSWGFS 224 (860)
Q Consensus 151 ~d~~~l~s-~~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg--~i~~w~~~ 224 (860)
|||+.|+. ...+| .|.+||+.++ ....+..+........|+||++ .++..+. +| .|+++++.
T Consensus 252 pDG~~la~~~~~~g~~~Iy~~d~~~~-------~~~~lt~~~~~~~~~~~spDg~-----~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 252 PDGSKLAFVLSKDGNPEIYVMDLASR-------QLSRVTNHPAIDTEPFWGKDGR-----TLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCC-------CeEEcccCCCCcCCeEECCCCC-----EEEEEECCCCCceEEEEECC
Confidence 99998874 44444 5777788766 2334555555666789999998 7665553 44 46666655
Q ss_pred CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-C--eEEEEECCCceeEEE
Q 038577 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-G--VFGLYQMPDFVCIHL 301 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~~~~~~~~~~~ 301 (860)
++.. ... .+. ........|+|+|+.++..... + .|.++|+.+++...
T Consensus 320 ~g~~---------------------~~l------t~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~- 369 (430)
T PRK00178 320 GGRA---------------------ERV------TFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI- 369 (430)
T ss_pred CCCE---------------------EEe------ecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-
Confidence 4321 000 011 1123456899999999877654 3 58888988776433
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 359 (860)
+... .......|+|||+.++++....|. +.+++...+ ....+..+.+.+...+|+|
T Consensus 370 lt~~-~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 370 LTDT-SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCC
Confidence 3222 122356899999999998876544 556666433 3333444455566667766
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.1e-11 Score=131.75 Aligned_cols=233 Identities=13% Similarity=0.084 Sum_probs=149.7
Q ss_pred cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577 75 RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS 150 (860)
Q Consensus 75 ~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 150 (860)
.+.++|...............+.+.+|||||+.|+... ...|++||+.+++. ..+....+.....+|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--------~~lt~~~g~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--------EKVTSFPGINGAPRFS 270 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--------EEecCCCCCcCCeeEC
Confidence 67777877665544455778899999999999999872 23699999988762 2233233344578999
Q ss_pred CCCCeEEE-eecCCe--EEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc-CCcc--EEEeeec
Q 038577 151 PDSNYLLV-GSKDLA--VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA-RDCY--MFSWGFS 224 (860)
Q Consensus 151 ~d~~~l~s-~~~dg~--v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~-~dg~--i~~w~~~ 224 (860)
|||+.|+. .+.++. |.+||+.++ ....+..+........|+||++ .|+..+ .++. ++++++.
T Consensus 271 PDG~~La~~~~~~g~~~Iy~~dl~tg-------~~~~lt~~~~~~~~p~wSpDG~-----~I~f~s~~~g~~~Iy~~dl~ 338 (448)
T PRK04792 271 PDGKKLALVLSKDGQPEIYVVDIATK-------ALTRITRHRAIDTEPSWHPDGK-----SLIFTSERGGKPQIYRVNLA 338 (448)
T ss_pred CCCCEEEEEEeCCCCeEEEEEECCCC-------CeEECccCCCCccceEECCCCC-----EEEEEECCCCCceEEEEECC
Confidence 99998875 455665 666677655 2344555555667789999998 776554 3444 4445554
Q ss_pred CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-C--eEEEEECCCceeEEE
Q 038577 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-G--VFGLYQMPDFVCIHL 301 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g--~i~~~~~~~~~~~~~ 301 (860)
++.. .. ..+. .......+|+|+|+.++....+ + .|.++|+.+++...
T Consensus 339 ~g~~------------------------~~---Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~- 388 (448)
T PRK04792 339 SGKV------------------------SR---LTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV- 388 (448)
T ss_pred CCCE------------------------EE---EecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-
Confidence 4321 00 0011 1123346899999998876553 3 46667877765432
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEEEEcC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCLAYSP 359 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 359 (860)
+... .......|+|||+.++++...+|. +.+++. ++.....+..+.+.+...+|+|
T Consensus 389 lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 2222 122345899999999998876554 666676 4555555555556677778876
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.47 E-value=1.4e-10 Score=122.21 Aligned_cols=299 Identities=12% Similarity=0.144 Sum_probs=195.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEE
Q 038577 275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC 354 (860)
Q Consensus 275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~ 354 (860)
.+..+++++.+|.+..+|..+++.+............. ..++..+++++.+ |.+..+|..+++.+.+..... .+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p--~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~~~~~-~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGV--GADGGLVFVGTEK-GEVIALDAEDGKELWRAKLSS-EVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccce--EEcCCEEEEEcCC-CEEEEEECCCCcEeeeeccCc-eeec
Confidence 36788999999999999999999887766554322222 2356667766554 999999999999887664322 2221
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceE-----EEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577 355 LAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVT-----ALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF 429 (860)
Q Consensus 355 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 429 (860)
.... .+..++.++.+|.+..||..+|+.+..+........ ..... + ..++.+..++.+..+|..+++.....
T Consensus 140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence 1111 245677788899999999999988877654332211 11121 2 36778888899999999998876544
Q ss_pred eCCCCC---c---EEEEEECC--CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577 430 TTPSSR---Q---FVSLASDQ--SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTV 501 (860)
Q Consensus 430 ~~~~~~---~---~~~~~~~~--~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i 501 (860)
...... . ...+.-+| .+..+++++.++ .++.+|.++|+.+..... . ....... ++..++.++.||.+
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g-~l~a~d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l 291 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQG-RVAALDLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVV 291 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCC-EEEEEECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeE
Confidence 322110 0 00010111 355777777777 999999999988776552 1 1122222 46678888899999
Q ss_pred EEEEccCCcceeEEcccCC-CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCC
Q 038577 502 RLWNVFEGKGSVESFPHTH-DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSS 580 (860)
Q Consensus 502 ~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (860)
..+|..+++.+........ ...+... .+..+++++.+|.++++|..+|+.+..++.+...
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~----------------- 352 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSG----------------- 352 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc-----------------
Confidence 9999998875544422111 2222222 4668999999999999999999999988765421
Q ss_pred CCcEEEEEEecCCCEEEEecCCCeEEEE
Q 038577 581 GKCFTTLCYSADGSYILAGGSSKYICMY 608 (860)
Q Consensus 581 ~~~i~~l~~s~~g~~l~~~~~dg~v~vw 608 (860)
...+..+ .+ ..|+.++.||.|..|
T Consensus 353 --~~~sp~~-~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 353 --IASPPVV-VG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred --cccCCEE-EC-CEEEEEeCCceEEEe
Confidence 0122222 23 358888899988765
No 271
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=1.7e-11 Score=131.77 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=149.3
Q ss_pred CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577 74 QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW 149 (860)
Q Consensus 74 ~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 149 (860)
..|.++|...+.......+...+...+|+|||++||.+. ...|++||+.+++. ..+..+.+.+.+++|
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--------~~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--------EKVASFPGMNGAPAF 241 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--------EEeecCCCCccceEE
Confidence 368888887555554455666799999999999999882 25899999988752 334445666778999
Q ss_pred cCCCCeEEEe-ecCC--eEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC-Cc--cEEEeee
Q 038577 150 SPDSNYLLVG-SKDL--AVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR-DC--YMFSWGF 223 (860)
Q Consensus 150 s~d~~~l~s~-~~dg--~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~-dg--~i~~w~~ 223 (860)
+|||+.|+.. +.++ .|.+|++.++ ....+..+........|+||++ .|+..+. ++ .|+++++
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~-------~~~~l~~~~~~~~~~~~s~dg~-----~l~~~s~~~g~~~iy~~d~ 309 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGK-------QLTRLTNGPGIDTEPSWSPDGK-----SIAFTSDRGGSPQIYMMDA 309 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCC-------CEEECCCCCCCCCCEEECCCCC-----EEEEEECCCCCceEEEEEC
Confidence 9999877654 4444 5888888765 2333444555555678999998 7776554 34 4666665
Q ss_pred cCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC---eEEEEECCCceeEE
Q 038577 224 SGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG---VFGLYQMPDFVCIH 300 (860)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g---~i~~~~~~~~~~~~ 300 (860)
.++.. ..+...........|+|+++.++.+..++ .|.+|++.++...
T Consensus 310 ~~~~~-----------------------------~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~- 359 (417)
T TIGR02800 310 DGGEV-----------------------------RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER- 359 (417)
T ss_pred CCCCE-----------------------------EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-
Confidence 54311 01112234466788999999999888776 8899998775433
Q ss_pred EEeecCceeEEEEEeeCCCEEEEEEccCCc--EEEEEccCceEEEEecCcccCeEEE
Q 038577 301 LLSISREKITTAVFNELGNWLVFGCAKLGQ--LLVWEWRSESYILKQQGHYFDVNCL 355 (860)
Q Consensus 301 ~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~--i~v~d~~~~~~~~~~~~~~~~v~~~ 355 (860)
.+... .......|+|+|+.+++....++. +.+.+.. +.....+..+.+.+..+
T Consensus 360 ~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~ 414 (417)
T TIGR02800 360 VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREP 414 (417)
T ss_pred EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCC
Confidence 23222 234566899999999998876543 4444433 33333333333333333
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.6e-09 Score=102.72 Aligned_cols=293 Identities=13% Similarity=0.153 Sum_probs=196.2
Q ss_pred CCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---ccEEEeeecCCCCCCccccCCCC
Q 038577 162 DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---CYMFSWGFSGNDGKIDETMEDSE 238 (860)
Q Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---g~i~~w~~~~~~~~~~~~~~~~~ 238 (860)
+.-|.+|++++.... .....+..+.+.++-++|+|+.+ +|+++..+ |.+..+.++....
T Consensus 15 s~gI~v~~ld~~~g~---l~~~~~v~~~~nptyl~~~~~~~-----~LY~v~~~~~~ggvaay~iD~~~G---------- 76 (346)
T COG2706 15 SQGIYVFNLDTKTGE---LSLLQLVAELGNPTYLAVNPDQR-----HLYVVNEPGEEGGVAAYRIDPDDG---------- 76 (346)
T ss_pred CCceEEEEEeCcccc---cchhhhccccCCCceEEECCCCC-----EEEEEEecCCcCcEEEEEEcCCCC----------
Confidence 567999999965222 22344556777889999999998 89988665 6777777775322
Q ss_pred CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcC-CeEEEEECCC-ceeEE--EEeecCce------
Q 038577 239 PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN-GVFGLYQMPD-FVCIH--LLSISREK------ 308 (860)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-g~i~~~~~~~-~~~~~--~~~~~~~~------ 308 (860)
...........+ .+.+.+++++++++++++... |.|.++-+.. +.... ....|.+.
T Consensus 77 ------------~Lt~ln~~~~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ 142 (346)
T COG2706 77 ------------RLTFLNRQTLPG--SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQ 142 (346)
T ss_pred ------------eEEEeeccccCC--CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccc
Confidence 222222333333 344889999999998877654 8999999864 32221 11222222
Q ss_pred ----eEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec---CcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 038577 309 ----ITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ---GHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSS 380 (860)
Q Consensus 309 ----i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~ 380 (860)
+....+.|+++++++..-..-.|.+|++..+....... ......+.+.|+|++++..+..+ +++|.+|..+.
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 78899999999999987666789999999776543321 23445788999999998877665 88999999876
Q ss_pred C-eeEEEeec---------CCCceEEEEEeeCCCEEEEEeC-CCcEEEEEccccce-eeEe--eCCCCCcEEEEEECCCC
Q 038577 381 G-FCFVTFTE---------HTNAVTALHFMANNHSLLSASL-DGTVRAWDLFRYRN-FRTF--TTPSSRQFVSLASDQSG 446 (860)
Q Consensus 381 ~-~~~~~~~~---------~~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~~~~-~~~~--~~~~~~~~~~~~~~~~~ 446 (860)
. ..+..++. ......+|.+++||++|.++.+ ...|.+|.+..... +..+ ..........+.+++.|
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence 3 22222221 2345678899999999988754 23677777754322 2221 22223336789999999
Q ss_pred CEEEEEecCCCeEEEEECC--CCceEEEec-CcccCeEEEEEc
Q 038577 447 EVICAGTLDSFEIFVWSMK--TGRLLDILS-GHEGPVHGLVFS 486 (860)
Q Consensus 447 ~~l~~~~~~~~~i~v~d~~--~~~~~~~~~-~h~~~v~~l~~s 486 (860)
++|+++.+++..|.+|... +|++..... .......|+.|.
T Consensus 303 ~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 303 RFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 9999999988888888665 565544332 234445566653
No 273
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=6.6e-11 Score=109.91 Aligned_cols=278 Identities=14% Similarity=0.159 Sum_probs=179.4
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC------------CcEEEEEEccCCCCCccce
Q 038577 141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR------------DSVVGCFFSVDKKTDKVNR 208 (860)
Q Consensus 141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~------------~~i~~~~~~~~~~~~~~~~ 208 (860)
.+-|.++.|..+|.+||+|..+|.|.++.-+....+ .......++.|. ..|..+.|.+++. ...
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n---~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN---LAE 100 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC---ccE
Confidence 456899999999999999999999999987655221 111223344443 4577788887765 236
Q ss_pred EEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCc---ceee----eEE-eeeeccccCCCCceEEEEecCCCCEEE
Q 038577 209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPE---RRVK----KWG-LLRKDDFSQAPSKVTACDYHRGLDMVV 280 (860)
Q Consensus 209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~ 280 (860)
++..+.|.++++|.+.....++.........+...... ...+ ... ...+.....|...|.++.++.|...++
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l 180 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL 180 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe
Confidence 77788899999999987655442111111100000000 0000 001 112334456788899999999998877
Q ss_pred EEEcCCeEEEEECCCcee---EEEEeec-----CceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE------Ee-
Q 038577 281 VGFSNGVFGLYQMPDFVC---IHLLSIS-----REKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL------KQ- 345 (860)
Q Consensus 281 ~~~~~g~i~~~~~~~~~~---~~~~~~~-----~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~------~~- 345 (860)
++ .|=.|.+|++.-... +..++.+ ..-|++..|+|....++.-++..|+|++-|++...... ..
T Consensus 181 SA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 65 456789998863221 1122222 23588999999765555444455999999998432211 10
Q ss_pred ---------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEeecCC------------Cce---EEEEEe
Q 038577 346 ---------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS-SGFCFVTFTEHT------------NAV---TALHFM 400 (860)
Q Consensus 346 ---------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~v---~~i~~~ 400 (860)
..--..|..+.|+++|+++++-+. -+|++||+. ..+++.++.-|. ..| ..++|+
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 111235788999999999998765 589999994 455666665442 222 457889
Q ss_pred eCCCEEEEEeCCCcEEEEEccccc
Q 038577 401 ANNHSLLSASLDGTVRAWDLFRYR 424 (860)
Q Consensus 401 ~~~~~l~s~~~dg~i~~wd~~~~~ 424 (860)
.++.++++|+....+++|++..+.
T Consensus 339 g~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 339 GNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CCcceEecccccceEEEecCCCCc
Confidence 899999999999999999976554
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=3.2e-11 Score=112.05 Aligned_cols=331 Identities=17% Similarity=0.236 Sum_probs=219.7
Q ss_pred cceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc
Q 038577 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF 260 (860)
Q Consensus 181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (860)
....+.||.+.++....-|... -+++.+.|.++++|--..... .| ....
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~-----gv~~~s~drtvrv~lkrds~q----------------------~w----psI~ 64 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE-----GVISVSEDRTVRVWLKRDSGQ----------------------YW----PSIY 64 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC-----CeEEccccceeeeEEeccccc----------------------cC----chhh
Confidence 4566788999998888888777 899999999999996544221 23 2223
Q ss_pred cCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC----CceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE-
Q 038577 261 SQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP----DFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE- 335 (860)
Q Consensus 261 ~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d- 335 (860)
...+.+++++.+.++...|++|..+|++.-+.+. ....++....|...+..+.|+..-+++++.+.+ ..+ .|-
T Consensus 65 ~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d-k~~-~~hc 142 (404)
T KOG1409|consen 65 HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD-KQF-AWHC 142 (404)
T ss_pred hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccc-cce-EEEe
Confidence 3456789999999999999999999999998764 234455666788899999999988998888765 222 232
Q ss_pred ccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577 336 WRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTV--SSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 336 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
.+.+..+..+.- ....+++.+.-. +...|...|.|..-.+ ..-..+.++.+|.+.+.+++|.+....|.++..|.
T Consensus 143 ~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 143 TESGNRLGGYNF-ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDH 219 (404)
T ss_pred eccCCcccceEe-eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccC
Confidence 222221111100 000111111111 4455666666655544 34567788999999999999999999999999999
Q ss_pred cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE-e-------------------
Q 038577 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI-L------------------- 473 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~-~------------------- 473 (860)
.+.+||+.-.+........+...+..+..-+--+.+.+++.|+ .|.+|+++..+.... .
T Consensus 220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg-~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~ 298 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDG-GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQ 298 (404)
T ss_pred ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCC-eEEEEeccceeecCccccccchhhhhCchHHHHHHH
Confidence 9999999877776666666666777777777778888888888 899999874422110 0
Q ss_pred ---------cCc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEE--------ccCCcceeEEcccCCCeEEEEEeeCC
Q 038577 474 ---------SGH-----EGPVHGLVFSPTNATLASSSWDKTVRLWN--------VFEGKGSVESFPHTHDVLTVVYRPDG 531 (860)
Q Consensus 474 ---------~~h-----~~~v~~l~~s~~~~~l~s~~~dg~i~iwd--------~~~~~~~~~~~~~~~~v~~~~~s~~~ 531 (860)
+.| ...|...+ +.+.....+.+..=.+|+-| ... .++.....-...|+.+.+...-
T Consensus 299 m~~~k~~glr~h~crkcg~avc~~c-~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~-t~LA~phei~tgItamhlqetl 376 (404)
T KOG1409|consen 299 MWDRKQLGLRQHHCRKCGKAVCGKC-SSNRSSYPTMGFEFSVRVCDSCYPTIKDEER-TPLAIPHEIKTGITAMHLQETL 376 (404)
T ss_pred HHhhhhhhhhhhhhhhhhhhcCccc-ccCccccccccceeEEEEecccchhhhcCCC-CccccccccccceeEEEhhhhc
Confidence 001 01111111 11111122222223344433 222 1233333445678999998888
Q ss_pred CEEEEEeCCCeEEEEeCCC
Q 038577 532 RQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 532 ~~l~~~~~dg~i~iwd~~~ 550 (860)
.+|++++.|..|+|||+..
T Consensus 377 glLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 377 GLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cceeecCCceEEEEEechh
Confidence 8999999999999999853
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=1e-09 Score=115.65 Aligned_cols=293 Identities=12% Similarity=0.074 Sum_probs=190.7
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV 287 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 287 (860)
.+++++.+|.+..+|..++.. .|.......... .. ..++..+++++.+|.
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~----------------------~W~~~~~~~~~~------~p--~v~~~~v~v~~~~g~ 116 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKR----------------------LWRVDLDERLSG------GV--GADGGLVFVGTEKGE 116 (377)
T ss_pred EEEEECCCCeEEEEEccCCcE----------------------eeeecCCCCccc------ce--EEcCCEEEEEcCCCE
Confidence 799999999999999887654 675443322111 11 124678889999999
Q ss_pred EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeE-----EEEEcCCCC
Q 038577 288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVN-----CLAYSPDSQ 362 (860)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~-----~~~~s~~~~ 362 (860)
+..+|..+++.+............... .+..+++... +|.+..+|.++++.+.+......... +.... +.
T Consensus 117 l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~ 191 (377)
T TIGR03300 117 VIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTN-DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG 191 (377)
T ss_pred EEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECC-CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC
Confidence 999999999988766544322111112 2445555544 49999999999998877644322111 11111 24
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEeecCCC----c------e-EEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeC
Q 038577 363 LLATGADDNKVKVWTVSSGFCFVTFTEHTN----A------V-TALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTT 431 (860)
Q Consensus 363 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------v-~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 431 (860)
.++.+..+|.+..+|..+|+.+........ . + ....+ .+..++.++.+|.+..||..+++.......
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~ 269 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA 269 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc
Confidence 677888889999999999987654321100 0 0 01111 245788888899999999999887765543
Q ss_pred CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCccc-CeEEEEEcCCCCEEEEEeCCCcEEEEEccCCc
Q 038577 432 PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG-PVHGLVFSPTNATLASSSWDKTVRLWNVFEGK 510 (860)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~-~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 510 (860)
... ... ...+..++++..++ .++.+|..+|+.+........ ....... .+..+++++.+|.++++|..+++
T Consensus 270 ~~~---~~p--~~~~~~vyv~~~~G-~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~ 341 (377)
T TIGR03300 270 SSY---QGP--AVDDNRLYVTDADG-VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGS 341 (377)
T ss_pred CCc---cCc--eEeCCEEEEECCCC-eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCC
Confidence 221 111 23466777777777 999999999988765532211 2222222 46788999999999999999998
Q ss_pred ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577 511 GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546 (860)
Q Consensus 511 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 546 (860)
.......+...+..--...++ .|++++.||.|+.|
T Consensus 342 ~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 FVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 776665555443332222344 58888999998876
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.32 E-value=2.7e-10 Score=114.41 Aligned_cols=203 Identities=19% Similarity=0.189 Sum_probs=151.4
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE----ecCCCCEEEEEE
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD----YHRGLDMVVVGF 283 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~l~~~~ 283 (860)
+++....||.+++|+...+.......... ..........|.+..... +....+.. .+-+...++.|.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-----~~s~t~~~~~w~L~~~~s----~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIA-----SLSGTCTYTKWGLSADYS----PMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccch-----hccCcceeEEEEEEeccc----hHHHHhHHHHhhccCCceEEEeec
Confidence 89999999999999998875532222111 111112223454322110 00111111 133456788999
Q ss_pred cCCeEEEEECCCceeEEEEe--ecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577 284 SNGVFGLYQMPDFVCIHLLS--ISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS 361 (860)
Q Consensus 284 ~~g~i~~~~~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 361 (860)
..|.|.+|+...++....+. .|.+.+.++.++.+-..+.+++.+ +.+..|+...+..++.+......+.+++++|||
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad-~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~ 156 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD-LKVVYILEKEKVIIRIWKEQKPLVSSLCISPDG 156 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCc-eeEEEEecccceeeeeeccCCCccceEEEcCCC
Confidence 99999999999999888776 467788988888887777777665 999999999999999999888899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC-----CCEEE-EEeCCCcEEEEEccc
Q 038577 362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN-----NHSLL-SASLDGTVRAWDLFR 422 (860)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~-----~~~l~-s~~~dg~i~~wd~~~ 422 (860)
..+++++ +.|++||+++++.+..|.+|.++|.++.|..+ |.+++ +...+..+.+|-+..
T Consensus 157 ~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 157 KILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9999987 58999999999999999999999999999876 55555 444566677887654
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=2e-09 Score=112.47 Aligned_cols=208 Identities=7% Similarity=-0.049 Sum_probs=135.1
Q ss_pred CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCE-EEEEcC---CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCE
Q 038577 32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTF-LLTVDE---NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKY 107 (860)
Q Consensus 32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~-la~~~~---d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~ 107 (860)
..|.+-|......+.+..+ . .+....|||||+. ++..+. +..|.++|+.+++.......++.....+|||||+.
T Consensus 169 ~~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 3688888876665555533 3 7789999999985 665433 36799999999887766666677778899999998
Q ss_pred EEEE----eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CC--eEEEEeecccccCcccc
Q 038577 108 IAVG----TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DL--AVRLFYVKEKLKGIHTN 180 (860)
Q Consensus 108 la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg--~v~vwd~~~~~~~~~~~ 180 (860)
|+.. .+..|+++|+.+++ ...+..+.+......|+|||+.|+..+. .+ .|.+.|+.++ .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~--------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g------~ 312 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKT--------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG------S 312 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCc--------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC------C
Confidence 8876 34688899988775 2445545444456789999998887664 23 5777777665 1
Q ss_pred cceEeecCCCcEEEEEEccCCCCCccceEEEEcCC---------ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeee
Q 038577 181 KPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD---------CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKK 251 (860)
Q Consensus 181 ~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d---------g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (860)
. ..+...... ...|+|||+ .++..+.. ..|.+.+++++..
T Consensus 313 ~-~rlt~~g~~--~~~~SPDG~-----~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----------------------- 361 (419)
T PRK04043 313 V-EQVVFHGKN--NSSVSTYKN-----YIVYSSRETNNEFGKNTFNLYLISTNSDYI----------------------- 361 (419)
T ss_pred e-EeCccCCCc--CceECCCCC-----EEEEEEcCCCcccCCCCcEEEEEECCCCCe-----------------------
Confidence 1 111111111 248999999 77766543 2466666655421
Q ss_pred EEeeeeccccCCCCceEEEEecCCCCEEEEEEcC---CeEEEEEC
Q 038577 252 WGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSN---GVFGLYQM 293 (860)
Q Consensus 252 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---g~i~~~~~ 293 (860)
.. +... .......|+|||+.++..... ..+.+.++
T Consensus 362 -~~-----LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 362 -RR-----LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred -EE-----CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 11 1111 122357899999988876543 23555566
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=9.5e-09 Score=119.72 Aligned_cols=240 Identities=13% Similarity=0.146 Sum_probs=166.8
Q ss_pred EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC--------------cccCeEEEEEcCCCCEEEEEeC-CCcEE
Q 038577 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG--------------HYFDVNCLAYSPDSQLLATGAD-DNKVK 374 (860)
Q Consensus 310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~-dg~i~ 374 (860)
..+++++++..++++...++.|.++|..... +..+.+ +......+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4688888777777777777999999976543 333321 1123578999998887666554 56799
Q ss_pred EEECCCCeeEEEeecC-----------------CCceEEEEEee-CCCEEEEEeCCCcEEEEEccccceeeEeeCC----
Q 038577 375 VWTVSSGFCFVTFTEH-----------------TNAVTALHFMA-NNHSLLSASLDGTVRAWDLFRYRNFRTFTTP---- 432 (860)
Q Consensus 375 iwd~~~~~~~~~~~~~-----------------~~~v~~i~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---- 432 (860)
++|..++.. .++.+. -.....++++| ++..+++.+.++.|++||..++.... +...
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999876643 333110 12356899999 56666777788899999987664321 1100
Q ss_pred ----------CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC---------------------cccCeE
Q 038577 433 ----------SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG---------------------HEGPVH 481 (860)
Q Consensus 433 ----------~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~---------------------h~~~v~ 481 (860)
.-.....++++|++..|+++..+++.|++||+.++.......+ ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1123567999999998877777766999999987653221100 011346
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc--------------cCCCeEEEEEeeCCCEEEEEeCCCeEEEEe
Q 038577 482 GLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP--------------HTHDVLTVVYRPDGRQLACSTLDGQIHFWD 547 (860)
Q Consensus 482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 547 (860)
+++++++|..+++-+.++.|++||..++... ...+ .-.....++++++|+++++-+.++.|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 8999999998888888999999999876532 2221 123567899999999888888899999999
Q ss_pred CCCCce
Q 038577 548 PLNGEL 553 (860)
Q Consensus 548 ~~~~~~ 553 (860)
+.+++.
T Consensus 887 ~~~~~~ 892 (1057)
T PLN02919 887 LNKGEA 892 (1057)
T ss_pred CCCCcc
Confidence 998875
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=1.9e-08 Score=92.60 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=146.8
Q ss_pred EEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEee---ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccccc
Q 038577 99 ILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLA---DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLK 175 (860)
Q Consensus 99 ~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~ 175 (860)
++.++||++||+..|..|.|-.....-.. .+.+.. .....=..++||||+..||.+...|+|+++|+... .
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~s-----i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSS-----IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-E 76 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchh-----eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-e
Confidence 67789999999999999998776654321 112222 22334578999999999999999999999999865 1
Q ss_pred CcccccceEee-cCCCcEEEEEEccCCCCC-ccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEE
Q 038577 176 GIHTNKPFLLL-GHRDSVVGCFFSVDKKTD-KVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWG 253 (860)
Q Consensus 176 ~~~~~~~~~~~-~h~~~i~~~~~~~~~~~~-~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (860)
........... .-...|.++.|.+..... ....|++...+|.++-+-+..+.. ..+.
T Consensus 77 lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~---------------------q~y~ 135 (282)
T PF15492_consen 77 LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN---------------------QGYQ 135 (282)
T ss_pred eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccC---------------------Ccce
Confidence 11001111111 123567777776543211 123677777888888777643221 0111
Q ss_pred eeee-ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEE-EEEccC---
Q 038577 254 LLRK-DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLV-FGCAKL--- 328 (860)
Q Consensus 254 ~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~~~--- 328 (860)
.... ......+..|.++.++|..++|++|+....= ++. -......+++-..-.+..+.. +...++
T Consensus 136 e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 136 ENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDIT 205 (282)
T ss_pred eeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCcccc
Confidence 1111 1122346689999999999998887754220 000 000001111111111111111 001110
Q ss_pred ---CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC
Q 038577 329 ---GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH 390 (860)
Q Consensus 329 ---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 390 (860)
....+|.+-+.+...........|..|..||||+.||+...+|.|.+|++.+-+.......+
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 11233333333332222335667999999999999999999999999999887776665433
No 280
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.23 E-value=1.7e-08 Score=92.95 Aligned_cols=242 Identities=11% Similarity=0.131 Sum_probs=143.8
Q ss_pred EEEe-CCCEEEeeeCCeEEEEECCCCcE-----EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee
Q 038577 18 AVLS-QNTKLISPVGNRVSVTDLIKSKT-----VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR 91 (860)
Q Consensus 18 ~~~s-dg~~l~~~~~~~i~v~d~~~~~~-----~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~ 91 (860)
++.+ ||+.||.-.+..|.|-..+..-. ...+..-...-+.++||||+.+||.+...|+|.++|+.. ..+..+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 4567 99999999999999987765422 123333345568999999999999999999999999875 4444443
Q ss_pred --------cCCceeEEEECCCC-------CEEEEEeCCeEEEEeCCCCCcccceeEEEEE--eec-cCCCeEEEEEcCCC
Q 038577 92 --------FKYPVNAILFSPNG-------KYIAVGTGKLVQIWRSPGFKKEVFAFELIRT--LAD-CNDKVTALNWSPDS 153 (860)
Q Consensus 92 --------~~~~v~~~~fspdg-------~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~--~~~-h~~~v~~l~~s~d~ 153 (860)
....|..+.|-+-. ++|+....|.++=|-+..+... .++.... +.. +...|.++.|+|..
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q--~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ--GYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC--cceeeEEEEecccCCCceeEEEEcCCC
Confidence 23557777785532 5677778888887776433211 1112222 333 47789999999999
Q ss_pred CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccc
Q 038577 154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET 233 (860)
Q Consensus 154 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 233 (860)
++|++||.... +.+ .-......+++-....+... ...++...|+....=
T Consensus 160 ~LLlVgG~~~~------~~~----------~s~a~~~GLtaWRiL~~~Py---yk~v~~~~~~~~~~~------------ 208 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDG----------MSKASSCGLTAWRILSDSPY---YKQVTSSEDDITASS------------ 208 (282)
T ss_pred CEEEEeccCCC------CCc----------cccccccCceEEEEcCCCCc---EEEccccCccccccc------------
Confidence 98888764321 000 00001111111111111110 001111111110000
Q ss_pred cCCCCCCCCCCCcceeeeEEeeee---ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecC
Q 038577 234 MEDSEPPSPGTPERRVKKWGLLRK---DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISR 306 (860)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~ 306 (860)
.....|++... .........|..|..+|||..|++...+|.|.+|++++...........
T Consensus 209 -------------~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 209 -------------KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred -------------cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 00011111111 1113356789999999999999999999999999999888776665443
No 281
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=1.8e-08 Score=117.46 Aligned_cols=254 Identities=17% Similarity=0.198 Sum_probs=164.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEeec--------------CCCceEEEEEeeCCCEEEEEe-CCCcEE
Q 038577 353 NCLAYSPD-SQLLATGADDNKVKVWTVSSGFCFVTFTE--------------HTNAVTALHFMANNHSLLSAS-LDGTVR 416 (860)
Q Consensus 353 ~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------------~~~~v~~i~~~~~~~~l~s~~-~dg~i~ 416 (860)
..++++++ +..+++-..++.|++||.. +..+..+.. .-.....++++++++.|+.+. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788875 5566666778899999976 444433322 112468899999887666554 456799
Q ss_pred EEEccccceeeEeeCC----------------CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-----
Q 038577 417 AWDLFRYRNFRTFTTP----------------SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG----- 475 (860)
Q Consensus 417 ~wd~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~----- 475 (860)
.+|+.++.. .++... .-.....++++|++..++++..+++.|++||..++.... +.+
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999876543 222110 011346789999666666665555599999998765432 211
Q ss_pred ----------cccCeEEEEEcCCCCEEE-EEeCCCcEEEEEccCCcceeEEc------------c---------cCCCeE
Q 038577 476 ----------HEGPVHGLVFSPTNATLA-SSSWDKTVRLWNVFEGKGSVESF------------P---------HTHDVL 523 (860)
Q Consensus 476 ----------h~~~v~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~------------~---------~~~~v~ 523 (860)
.......++++|+++.|+ +-+.++.|++||+.++....... + ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 112356799999998554 55567899999998764221110 0 011246
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC
Q 038577 524 TVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK 603 (860)
Q Consensus 524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 603 (860)
.++++++|.++++-..++.|++||..++...... +... .+.. + .......-.....++++++|+.+++-+.++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~-~G~~---d--G~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGK-AGFK---D--GKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCC-cCCC---C--CcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 8899999998888888999999999887665432 2110 0000 0 000111123478999999999989888999
Q ss_pred eEEEEECCCceEE
Q 038577 604 YICMYDVADQVLL 616 (860)
Q Consensus 604 ~v~vwd~~~~~~~ 616 (860)
.|++||+.+++..
T Consensus 881 ~Irvid~~~~~~~ 893 (1057)
T PLN02919 881 LIRYLDLNKGEAA 893 (1057)
T ss_pred EEEEEECCCCccc
Confidence 9999999998753
No 282
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.22 E-value=3.4e-08 Score=104.33 Aligned_cols=303 Identities=11% Similarity=0.065 Sum_probs=189.4
Q ss_pred CCCEEEEEEcCCeEEEEECCCceeEEEEeecCce-e--------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe
Q 038577 275 GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-I--------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ 345 (860)
Q Consensus 275 ~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-i--------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~ 345 (860)
.+..+++++.+|.+.-+|..+++.+......... . ..-...-++..+++++.+ |.+..+|.++|+.+.+.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-GQVYALNAEDGEVAWQT 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC-CEEEEEECCCCCCcccc
Confidence 3668888889999999999999988766543310 0 000011234556665544 99999999999988876
Q ss_pred cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCce-----EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 346 QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAV-----TALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 346 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
........+... .+..++++..+|.+..+|..+|+.+.......... .+... .+..++.++.+|.+..+|.
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 543221111112 23467778888999999999999887765321111 11111 1235777788999999999
Q ss_pred cccceeeEeeCCCCCc------EEEEEECC--CCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEE
Q 038577 421 FRYRNFRTFTTPSSRQ------FVSLASDQ--SGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATL 492 (860)
Q Consensus 421 ~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l 492 (860)
.+++............ ...+..+| .+..+++++.++ .++.+|..+|+.+....- +....+.. .+..+
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~v 297 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNG-NLVALDLRSGQIVWKREY--GSVNDFAV--DGGRI 297 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCC-eEEEEECCCCCEEEeecC--CCccCcEE--ECCEE
Confidence 9888766543221100 00111122 245666667776 899999999988765431 11122222 46677
Q ss_pred EEEeCCCcEEEEEccCCcceeEEcccC-CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577 493 ASSSWDKTVRLWNVFEGKGSVESFPHT-HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD 571 (860)
Q Consensus 493 ~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 571 (860)
+.++.+|.+..+|..+++......... ....+... .+.+|++++.+|.++++|..+|+.+...+.....
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~-------- 367 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSG-------- 367 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCc--------
Confidence 888889999999999887544332211 11222222 2457888999999999999999998877643210
Q ss_pred cccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 572 RRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
......+ .+..|+.++.||.|+.+++
T Consensus 368 -----------~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 368 -----------FLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -----------ceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 0111122 2457888899999888765
No 283
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.9e-08 Score=103.94 Aligned_cols=214 Identities=8% Similarity=-0.003 Sum_probs=137.6
Q ss_pred CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCE-EEEEEcc--CCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC
Q 038577 286 GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNW-LVFGCAK--LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ 362 (860)
Q Consensus 286 g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~~--~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~ 362 (860)
..|.+-|.... ..+.+.... ......|+|||+. ++++... ...|.++|+.+++...... ..+......|+|||+
T Consensus 169 ~~l~~~d~dg~-~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLT-YQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCC-ceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 35555555333 333333333 7788999999986 6554443 3679999998876554433 444566788999998
Q ss_pred EEEEEeC---CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC-CC--cEEEEEccccceeeEeeCCCCCc
Q 038577 363 LLATGAD---DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL-DG--TVRAWDLFRYRNFRTFTTPSSRQ 436 (860)
Q Consensus 363 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~ 436 (860)
.++.... +..|.++++.++... .+..+........|+|||+.|+..+. .+ .|.+.|+.+++..+...... .
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-N- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-c-
Confidence 7765432 346888888777643 44444443445689999987776653 33 57777887766544332221 1
Q ss_pred EEEEEECCCCCEEEEEecCC--------CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC-C--cEEEEE
Q 038577 437 FVSLASDQSGEVICAGTLDS--------FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD-K--TVRLWN 505 (860)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~--------~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g--~i~iwd 505 (860)
...++|+|+.++...... ..|++.|+.++.... +... +......|+|||+.++..+.+ + .+.+.+
T Consensus 323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 248999999998876542 378999998887543 3322 233458899999988776643 2 355666
Q ss_pred ccCC
Q 038577 506 VFEG 509 (860)
Q Consensus 506 ~~~~ 509 (860)
+...
T Consensus 399 l~g~ 402 (419)
T PRK04043 399 LNYN 402 (419)
T ss_pred cCCC
Confidence 6544
No 284
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.19 E-value=1e-10 Score=131.11 Aligned_cols=226 Identities=16% Similarity=0.229 Sum_probs=179.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEE
Q 038577 362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLA 441 (860)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 441 (860)
+.+.....++...-|..+.+... +..+-..|.++.-+|...+.++|+.||.+++|....+..+..+.......++.+.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~ 2258 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR 2258 (2439)
T ss_pred ccCCcccCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh
Confidence 34444444555555554333222 2335567888888888889999999999999999999999988888778999999
Q ss_pred ECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEe---CCCcEEEEEccCCcc-eeEEcc
Q 038577 442 SDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSS---WDKTVRLWNVFEGKG-SVESFP 517 (860)
Q Consensus 442 ~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~-~~~~~~ 517 (860)
|+.+|+...++..|| .+.+|... .++....+.|.....++.|-. ..+++++ .++.+.+||..-... -.....
T Consensus 2259 f~~qGnk~~i~d~dg-~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~ 2334 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDG-DLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC 2334 (2439)
T ss_pred hcccCCceeeeccCC-ceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee
Confidence 999999999999999 99999987 677777888999999998864 6677765 468899999643321 122257
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597 (860)
Q Consensus 518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 597 (860)
|.+.++++++.|..+.|++|+.+|.|++||++..++++.++.- . ...+++
T Consensus 2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~-----------------------------~-~~~~f~ 2384 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL-----------------------------D-TREYFV 2384 (2439)
T ss_pred cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh-----------------------------h-hhheee
Confidence 9999999999999999999999999999999988877666531 1 356899
Q ss_pred EecCCCeEEEEECCCceEEEEEeecc
Q 038577 598 AGGSSKYICMYDVADQVLLRRFQITH 623 (860)
Q Consensus 598 ~~~~dg~v~vwd~~~~~~~~~~~~~~ 623 (860)
+|+..|.++||++..-.++..++..+
T Consensus 2385 ~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred ccCcccceEEEEccccchhhcCchhh
Confidence 99999999999999988888776543
No 285
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=1.4e-08 Score=92.88 Aligned_cols=265 Identities=15% Similarity=0.180 Sum_probs=170.5
Q ss_pred cCCeEEEEECCCceeEE--EE-eecCceeEEEEEee---CCCEEEEEEccCCcEEEEEccCceEEEEecCcc------cC
Q 038577 284 SNGVFGLYQMPDFVCIH--LL-SISREKITTAVFNE---LGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY------FD 351 (860)
Q Consensus 284 ~~g~i~~~~~~~~~~~~--~~-~~~~~~i~~~~~s~---~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~------~~ 351 (860)
..|.+.+|++.+.+... ++ ......+..+.|.. +|.....-....|.|.++..........+.+-. ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 34788899887655443 22 22334556666653 455333333334899998876555444443221 12
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEcccc-ceee
Q 038577 352 VNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF--VTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRY-RNFR 427 (860)
Q Consensus 352 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~-~~~~ 427 (860)
..++.|++.+..++++..+|.+.+-+....... +..+.|.-+.+...|+... +.+.+||.|+.+..||++.. +.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 457789999999999999999996665555443 3788999999999997643 68889999999999999833 2333
Q ss_pred EeeCCCCCcEEEEEECC-CCCEEEEEecCCCeEEEEECCC-CceEEEecCcccCeEEEEEcCC--CCEEEEEeCCCcEEE
Q 038577 428 TFTTPSSRQFVSLASDQ-SGEVICAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHGLVFSPT--NATLASSSWDKTVRL 503 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~s~~--~~~l~s~~~dg~i~i 503 (860)
.-...+...|.++.-+| .+.++++|+.|. .|++||.+. ++++..-. -.+.|..+..+|. +..|+++-..| .+|
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe-~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki 280 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDE-CIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNG-AKI 280 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEecccc-ceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcC-ceE
Confidence 32333445677776665 578999999999 999999984 56655443 3588999999995 34455555454 667
Q ss_pred EEccCCcce-----eEEcccCCCeEEEEEeeCCCEEEEEe-CCCeEE-EEeCCCC
Q 038577 504 WNVFEGKGS-----VESFPHTHDVLTVVYRPDGRQLACST-LDGQIH-FWDPLNG 551 (860)
Q Consensus 504 wd~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~ 551 (860)
-+....... .....|.+-+..-.|..-...||+++ .|..++ +|-.-++
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 766554322 11223555555555644445677764 355534 6655444
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.15 E-value=7.6e-08 Score=101.74 Aligned_cols=306 Identities=13% Similarity=0.066 Sum_probs=186.4
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccc---cCCCCceEEEEecCCCCEEEEEEc
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDF---SQAPSKVTACDYHRGLDMVVVGFS 284 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~ 284 (860)
.+++.+.++.+..+|..+++. .|........ .............-++..+++++.
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~----------------------~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~ 128 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKE----------------------IWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE 128 (394)
T ss_pred EEEEECCCCeEEEEECCCCcE----------------------eeEEcCCCcccccccccccccccccEEECCEEEEEcC
Confidence 788888899999999887754 6765432210 000000000001114567888999
Q ss_pred CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEE-EEEcC--CC
Q 038577 285 NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC-LAYSP--DS 361 (860)
Q Consensus 285 ~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~-~~~s~--~~ 361 (860)
+|.+..+|..+++.+............... .+..+++... +|.+..+|.++|+.+............ ..-+| .+
T Consensus 129 ~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 129 KGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTS-NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred CCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECC-CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 999999999999988776654322222222 2344555444 489999999999988877532111100 00111 13
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEeecCCC-------ceEEEEEee--CCCEEEEEeCCCcEEEEEccccceeeEeeCC
Q 038577 362 QLLATGADDNKVKVWTVSSGFCFVTFTEHTN-------AVTALHFMA--NNHSLLSASLDGTVRAWDLFRYRNFRTFTTP 432 (860)
Q Consensus 362 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~i~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 432 (860)
..++.++.+|.+..+|..+|+.+........ ....+..+| .+..++.++.+|.+..+|..+++........
T Consensus 206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 3567778889999999998877655431110 001111111 2446777888999999999999877655433
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc
Q 038577 433 SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG 511 (860)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 511 (860)
.. ..+. ..+..+++++.++ .++.+|..+|+.+.....-. ....+... .+..++.++.||.+...|..+++.
T Consensus 286 ~~---~~~~--~~~~~vy~~~~~g-~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 286 SV---NDFA--VDGGRIYLVDQND-RVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRF 357 (394)
T ss_pred Cc---cCcE--EECCEEEEEcCCC-eEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 21 1111 2456777777777 99999999998765443211 11222222 256788889999999999999986
Q ss_pred eeEEcccCCCeEE-EEEeeCCCEEEEEeCCCeEEEEeC
Q 038577 512 SVESFPHTHDVLT-VVYRPDGRQLACSTLDGQIHFWDP 548 (860)
Q Consensus 512 ~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~ 548 (860)
+.........+.+ ..+ .+..|++++.||.|+.+++
T Consensus 358 ~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 358 VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 6555433233322 222 2447888999999988865
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=1.5e-08 Score=91.24 Aligned_cols=258 Identities=10% Similarity=0.011 Sum_probs=169.4
Q ss_pred CeEEEEECCCCcE--EeeccCCccCeeEEEEcC-----CCCEEEEEcCCCcEEEEEcccCeEEEEee--cCCceeEEEEC
Q 038577 32 NRVSVTDLIKSKT--VTLPVESSSNICRIAVSP-----DGTFLLTVDENQRCHFINLHCHVVLHRVR--FKYPVNAILFS 102 (860)
Q Consensus 32 ~~i~v~d~~~~~~--~~~~~~h~~~v~~va~sp-----dg~~la~~~~d~~i~vwd~~~~~~~~~~~--~~~~v~~~~fs 102 (860)
..+-+|+.-++.. +.+. +.+.|-| .-.+||.++..|...+|...+.+....+- +...|+-+.=.
T Consensus 52 ~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 52 ISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 4577888776652 2222 3445544 33579999999999999988655443322 33322211111
Q ss_pred CC--CCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCC--eEEEEEcCCCCeEEEeecCCeEEEEeecccccCcc
Q 038577 103 PN--GKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDK--VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH 178 (860)
Q Consensus 103 pd--g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~ 178 (860)
.| .+.+.+..|.++++.+++.+.. ....|... +.++++++|++++++.+....|..|.++...+.
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~---------~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey-- 193 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSN---------KFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY-- 193 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcc---------cceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce--
Confidence 11 2344455788888888876542 12234333 789999999999999999999999999877333
Q ss_pred cccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeec
Q 038577 179 TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKD 258 (860)
Q Consensus 179 ~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (860)
.....+....+.-.+..|+.... .++++..||++.+||+......+. ....
T Consensus 194 -~~~~~~a~t~D~gF~~S~s~~~~-----~FAv~~Qdg~~~I~DVR~~~tpm~-----------------------~~ss 244 (344)
T KOG4532|consen 194 -IENIYEAPTSDHGFYNSFSENDL-----QFAVVFQDGTCAIYDVRNMATPMA-----------------------EISS 244 (344)
T ss_pred -eeeeEecccCCCceeeeeccCcc-----eEEEEecCCcEEEEEecccccchh-----------------------hhcc
Confidence 12234555666667888999888 999999999999999987533111 1122
Q ss_pred cccCCCCceEEEEecCCC--CEEEEEEcCCeEEEEECCCceeEEEEeecCc--------eeEEEEEeeCCCEEEEEEccC
Q 038577 259 DFSQAPSKVTACDYHRGL--DMVVVGFSNGVFGLYQMPDFVCIHLLSISRE--------KITTAVFNELGNWLVFGCAKL 328 (860)
Q Consensus 259 ~~~~~~~~v~~~~~~~~~--~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~--------~i~~~~~s~~~~~l~~~~~~~ 328 (860)
.-+.|.+.+..+.|++.| ++|+..-.-+.+.+.|+.++...+.+....+ .+....|+.++....+....
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~- 323 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL- 323 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch-
Confidence 233578899999999876 4566666668899999998877666554433 36777777777666655442
Q ss_pred CcEEEEEccC
Q 038577 329 GQLLVWEWRS 338 (860)
Q Consensus 329 g~i~v~d~~~ 338 (860)
.+.-|++.+
T Consensus 324 -~~ae~ni~s 332 (344)
T KOG4532|consen 324 -QGAEYNILS 332 (344)
T ss_pred -hhheeeccc
Confidence 344444433
No 288
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=5.5e-10 Score=110.30 Aligned_cols=215 Identities=19% Similarity=0.345 Sum_probs=161.1
Q ss_pred EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCc
Q 038577 342 ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS-------GFCFVTFTEHTNAVTALHFMANNHSLLSASLDGT 414 (860)
Q Consensus 342 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~ 414 (860)
+..+.+|...|+.++--.+.+.+++++.|.+|++|.++. ..+..++..|+.+|.++.|..+.++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345678999999888777888999999999999999863 34777889999999999999998777654 789
Q ss_pred EEEEEccccceeeEee-CCCCCcEEEEEE--CCCCCEEEEEecCCCeEEEEECCCCceEEEec-----CcccCeEEEEEc
Q 038577 415 VRAWDLFRYRNFRTFT-TPSSRQFVSLAS--DQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-----GHEGPVHGLVFS 486 (860)
Q Consensus 415 i~~wd~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-----~h~~~v~~l~~s 486 (860)
+.+||.--++....+. .+.......+.. +-+...+.+++.-..+++++|.+.++....++ +....+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999988777665333 222222222222 22455555664444499999999988776654 345668999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEE-EeCCCCceeEEEec
Q 038577 487 PTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHF-WDPLNGELMYTIEG 559 (860)
Q Consensus 487 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~ 559 (860)
|.|++++.+-..|+|.+.|.++++.+..+.+.......++- |..+.|+....|.++.+ |..-+|......+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kp 958 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKP 958 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence 99999999999999999999999866655555555544443 45567888888889988 98888776665544
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.2e-09 Score=102.67 Aligned_cols=274 Identities=15% Similarity=0.176 Sum_probs=194.8
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC--C-eeEEEeecCCCceEEEEEeeCCCEEEEEeC-CCcEEEEEccc
Q 038577 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS--G-FCFVTFTEHTNAVTALHFMANNHSLLSASL-DGTVRAWDLFR 422 (860)
Q Consensus 347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~-dg~i~~wd~~~ 422 (860)
-|...|+.+..+ -.+++.+++.||.++.|--.. + +.+..+..|...|.+++.+.++..+.+.+. |..++++|+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 366667666544 456999999999999997543 1 334456678889999999999988889777 99999999988
Q ss_pred cceeeEeeCCCCCcEEEEEECCCC--CEEEEEecCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 423 YRNFRTFTTPSSRQFVSLASDQSG--EVICAGTLDSFEIFVWSMKTGR--LLDILSGHEGPVHGLVFSPTNATLASSSWD 498 (860)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d 498 (860)
...+..+.........++..++.. ..++++..+.+.+.++|-...- ....-.-|..+|..+.+.|.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 766655544443333344444432 3677777777799999976443 334445699999999999999999999999
Q ss_pred CcEEEEEccC------Cc---------ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccccc
Q 038577 499 KTVRLWNVFE------GK---------GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDI 563 (860)
Q Consensus 499 g~i~iwd~~~------~~---------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 563 (860)
|.|.-|.... .+ .+..+.......+++.|+|+|..+.+-+.|..|++++..+|+.++.++.....
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999999863 11 01122234566899999999999999999999999999999988876543211
Q ss_pred CCCcccc---------cccccc----ccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577 564 SGGRLMT---------DRRSAA----NSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT 622 (860)
Q Consensus 564 ~~~~~~~---------~~~~~~----~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 622 (860)
....... .++.+. .......-+.++|...|++|+.++-=| |++.++.++...+.+...
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKD 316 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccc
Confidence 1000000 000000 001122347789999999999988777 999999999998866543
No 290
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.08 E-value=2.7e-07 Score=95.54 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=164.9
Q ss_pred e-CCCEEEeee----------CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEE
Q 038577 21 S-QNTKLISPV----------GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHR 89 (860)
Q Consensus 21 s-dg~~l~~~~----------~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~ 89 (860)
| |+++++... .+.+.+||+.+++...+... ...+....|||||+++|... ++.|.+++..++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 5 788887742 35699999999988777644 67899999999999999986 57999999888855543
Q ss_pred eecC------------------CceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEE
Q 038577 90 VRFK------------------YPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNW 149 (860)
Q Consensus 90 ~~~~------------------~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 149 (860)
.... +.-.++.|||||++||.. .+..|..+.+........ ....+..+.+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~----------~yp~~~~~~Y 148 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS----------QYPEVESIRY 148 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE----------SS-EEEEEE-
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc----------cCCccccccc
Confidence 3211 124678999999999998 555555544321110000 0012333333
Q ss_pred cCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcC--C---ccEEEeeec
Q 038577 150 SPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIAR--D---CYMFSWGFS 224 (860)
Q Consensus 150 s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~--d---g~i~~w~~~ 224 (860)
-.-|.--.. -.+.|+|+.++ +.........+..-...+..+.|.+++. .++..-. + ..+.+.|..
T Consensus 149 Pk~G~~np~----v~l~v~~~~~~-~~~~~~~~~~~~~~~~yl~~v~W~~d~~-----~l~~~~~nR~q~~~~l~~~d~~ 218 (353)
T PF00930_consen 149 PKAGDPNPR----VSLFVVDLASG-KTTELDPPNSLNPQDYYLTRVGWSPDGK-----RLWVQWLNRDQNRLDLVLCDAS 218 (353)
T ss_dssp -BTTS---E----EEEEEEESSST-CCCEE---HHHHTSSEEEEEEEEEETTE-----EEEEEEEETTSTEEEEEEEEEC
T ss_pred CCCCCcCCc----eEEEEEECCCC-cEEEeeeccccCCCccCcccceecCCCc-----EEEEEEcccCCCEEEEEEEECC
Confidence 222221111 13566777666 1100000001123456678899999986 4554433 2 245566665
Q ss_pred CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEec-CCCCEEE-EEEcCC--eEEEEECCCceeEE
Q 038577 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYH-RGLDMVV-VGFSNG--VFGLYQMPDFVCIH 300 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~-~~~~~g--~i~~~~~~~~~~~~ 300 (860)
++... +.. .....+.-.......+. +++..++ ....+| .|.+++...+. ..
T Consensus 219 tg~~~----------------------~~~--~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~ 273 (353)
T PF00930_consen 219 TGETR----------------------VVL--EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PR 273 (353)
T ss_dssp TTTCE----------------------EEE--EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EE
T ss_pred CCcee----------------------EEE--EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-ee
Confidence 54331 111 11111111122233443 5555544 444555 56666665555 34
Q ss_pred EEeecCcee-EEEEEeeCCCEEEEEEccC----CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577 301 LLSISREKI-TTAVFNELGNWLVFGCAKL----GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD 369 (860)
Q Consensus 301 ~~~~~~~~i-~~~~~s~~~~~l~~~~~~~----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 369 (860)
.+....-.| ..+.++++++.+.+.+..+ ..+...++..+.....+......-..+.|||+|++++....
T Consensus 274 ~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 274 QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 555555566 4578889999888877652 35666666623333444433333368999999998876543
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.06 E-value=4.2e-07 Score=86.93 Aligned_cols=231 Identities=17% Similarity=0.159 Sum_probs=165.6
Q ss_pred ceEEEEecC-CCCEEEEEEcCCe-EEEEECCCceeEEEEeecCce--eEEEEEeeCCCEEEEEEcc----CCcEEEEEcc
Q 038577 266 KVTACDYHR-GLDMVVVGFSNGV-FGLYQMPDFVCIHLLSISREK--ITTAVFNELGNWLVFGCAK----LGQLLVWEWR 337 (860)
Q Consensus 266 ~v~~~~~~~-~~~~l~~~~~~g~-i~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~~~~~~----~g~i~v~d~~ 337 (860)
....++.+| ....++++-.-|. ..+||..+++....+....+. .-...||+||++|+++-.+ .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 4555666766665 568999999988877665543 3468999999999987543 4889999999
Q ss_pred -CceEEEEecCcccCeEEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEE--e--ecCCCce
Q 038577 338 -SESYILKQQGHYFDVNCLAYSPDSQLLATGA------------------DDNKVKVWTVSSGFCFVT--F--TEHTNAV 394 (860)
Q Consensus 338 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~--~--~~~~~~v 394 (860)
+-..+.++..|.-....+.+.|||+.|+++- .+.++...|..+|+.+.. + ..|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 6677888877777777889999998887763 223466667778887766 4 3377899
Q ss_pred EEEEEeeCCCEEEEEeCCCc-----EEEEEccccceeeEeeCCC------CCcEEEEEECCCCCEEEEEecCCCeEEEEE
Q 038577 395 TALHFMANNHSLLSASLDGT-----VRAWDLFRYRNFRTFTTPS------SRQFVSLASDQSGEVICAGTLDSFEIFVWS 463 (860)
Q Consensus 395 ~~i~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d 463 (860)
..+++.++|..++..-..|. --+.-.+.+...+.+..+. ...+-++++++++..+++++-.++.+.+||
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 99999999976665544442 1122222333344443332 346889999999999999999888999999
Q ss_pred CCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 464 MKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKT 500 (860)
Q Consensus 464 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~ 500 (860)
..+++.+.... -..+..++..+++ ++++.+ .|.
T Consensus 246 ~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 246 AATGRLLGSVP--LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred CCCCCEeeccc--cCceeeeeecCCc-eEEeCC-Ccc
Confidence 99999987764 3346777777666 566554 444
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.06 E-value=2.3e-09 Score=109.93 Aligned_cols=292 Identities=18% Similarity=0.247 Sum_probs=186.2
Q ss_pred ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc--ccCeEEEEEcCCC--CEEEEEeCCCcEEEEECC---
Q 038577 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH--YFDVNCLAYSPDS--QLLATGADDNKVKVWTVS--- 379 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~--- 379 (860)
+.+..+.++|.|+-++.++.. .+.+.|+...-.....-.| .-.|-.+.|+|.. .+-++......-.+|++.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~--gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQ--GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred Ccccceeeccccchhhhhhhc--CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 467788899999999988764 4566666543221111122 2235567777643 344444455567788875
Q ss_pred CCeeEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577 380 SGFCFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458 (860)
Q Consensus 380 ~~~~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (860)
+......+.+|...|+++-|.|.. ..+++++.|-.+..||+++.....-....-......+.++.....+.+.+... .
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~-~ 181 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN-D 181 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC-c
Confidence 334455677899999999999865 57889999999999999876543322222223445677776555555555555 8
Q ss_pred EEEEECCCC-ceEEEecCcccCeEEEEEcCC-CCEEEEEeCCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCC--E
Q 038577 459 IFVWSMKTG-RLLDILSGHEGPVHGLVFSPT-NATLASSSWDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGR--Q 533 (860)
Q Consensus 459 i~v~d~~~~-~~~~~~~~h~~~v~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~--~ 533 (860)
|.+||++.| .++..+++|...|..++|..- ...+.+++.||+|++||....... ........+|..-.+-|-|. +
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence 999999865 577889999999999998652 346888999999999998765422 23335566777777777443 3
Q ss_pred EEEEeCCCeEEEEe---------CCC-CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC--CEEEEecC
Q 038577 534 LACSTLDGQIHFWD---------PLN-GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG--SYILAGGS 601 (860)
Q Consensus 534 l~~~~~dg~i~iwd---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~ 601 (860)
+.---.+..+.+++ ..+ .++++.+.||.+..-.-....+ ....+.-|. -.|++-+.
T Consensus 262 ~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r------------~e~~~d~d~rdfQLVTWSk 329 (1081)
T KOG0309|consen 262 IMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKR------------KECDGDYDSRDFQLVTWSK 329 (1081)
T ss_pred eccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhc------------ccccCCCCccceeEEEeec
Confidence 22222222344443 333 3678889998874211000000 001111222 26889999
Q ss_pred CCeEEEEECCCc
Q 038577 602 SKYICMYDVADQ 613 (860)
Q Consensus 602 dg~v~vwd~~~~ 613 (860)
|..+++|-+.+.
T Consensus 330 D~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 330 DQTLRLWPIDSQ 341 (1081)
T ss_pred CCceEeeeccHH
Confidence 999999988653
No 293
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.05 E-value=5.9e-07 Score=85.96 Aligned_cols=246 Identities=16% Similarity=0.202 Sum_probs=162.6
Q ss_pred eeEEEEEeeCCC-EEEEEEccCCcEEEEEccCceEEEEecCcccCe--EEEEEcCCCCEEEEEeC-----CCcEEEEECC
Q 038577 308 KITTAVFNELGN-WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDV--NCLAYSPDSQLLATGAD-----DNKVKVWTVS 379 (860)
Q Consensus 308 ~i~~~~~s~~~~-~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~-----dg~i~iwd~~ 379 (860)
....++.+|... .++++-.......+||..+++....+....+.- -.-.||+||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888544 444444443457889999998877664322211 13579999999998643 5789999998
Q ss_pred -CCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCe
Q 038577 380 -SGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFE 458 (860)
Q Consensus 380 -~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 458 (860)
+...+.++..|.-....+.+.||++.|+.+. |-|.- ...+++.. |-....+. .
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN--GGI~T-hpd~GR~k----------------------LNl~tM~p-s 139 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVAN--GGIET-HPDSGRAK----------------------LNLDTMQP-S 139 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEc--CCCcc-CcccCcee----------------------cChhhcCC-c
Confidence 6788889998888889999999998888763 22211 00111111 11112222 5
Q ss_pred EEEEECCCCceEEE--e--cCcccCeEEEEEcCCCCEEEEEeCCCc-------EEEEEccCCcceeE-----EcccCCCe
Q 038577 459 IFVWSMKTGRLLDI--L--SGHEGPVHGLVFSPTNATLASSSWDKT-------VRLWNVFEGKGSVE-----SFPHTHDV 522 (860)
Q Consensus 459 i~v~d~~~~~~~~~--~--~~h~~~v~~l~~s~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~-----~~~~~~~v 522 (860)
+...|..+|+++.. + .-|...|..+++.++|..++..-..|. |-+++-...-.... .......+
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence 67777888888766 4 337888999999999987766655442 33343222111111 11345779
Q ss_pred EEEEEeeCCCEEEEEeC-CCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577 523 LTVVYRPDGRQLACSTL-DGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS 601 (860)
Q Consensus 523 ~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 601 (860)
-+|++++++.++++.+- .|.+.+||..+++.+....... +..++-.+++ ++++.+.
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D----------------------~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD----------------------ACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc----------------------eeeeeecCCc-eEEeCCC
Confidence 99999999988866654 5679999999999988776554 6777777777 6666554
Q ss_pred C
Q 038577 602 S 602 (860)
Q Consensus 602 d 602 (860)
.
T Consensus 277 G 277 (305)
T PF07433_consen 277 G 277 (305)
T ss_pred c
Confidence 3
No 294
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.05 E-value=8.7e-08 Score=86.51 Aligned_cols=203 Identities=10% Similarity=0.008 Sum_probs=132.2
Q ss_pred CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCC-CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577 403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQS-GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH 481 (860)
Q Consensus 403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~ 481 (860)
..+|+.||..|...+|...+.+.....-..+...+.-+.-..+ .--+..++.|. ++++.++..+.......-..-.+.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndh-t~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDH-TGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCc-ceeEEEEecCcccceeecccccee
Confidence 3578999999999999988655433322222221111110011 11233344444 677776664433222211123378
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccCCcc-eeE--EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577 482 GLVFSPTNATLASSSWDKTVRLWNVFEGKG-SVE--SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 482 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 558 (860)
++++++|++++++.+....|..|.+..... +.. .......-.+..|+.....+|++..||++.|||++.........
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 999999999999999999999999876542 222 22345556788999999999999999999999998765443322
Q ss_pred cccccCCCccccccccccccCCCCcEEEEEEecCCC--EEEEecCCCeEEEEECCCceEEEEEee
Q 038577 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS--YILAGGSSKYICMYDVADQVLLRRFQI 621 (860)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~--~l~~~~~dg~v~vwd~~~~~~~~~~~~ 621 (860)
... .+.+.+.+..+.|++-|. +|+..-.-+.+.+-|++++.-.+.+..
T Consensus 243 sst---------------rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 243 SST---------------RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred ccc---------------CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 211 123456799999998764 555555668899999999987766554
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.7e-07 Score=96.36 Aligned_cols=200 Identities=19% Similarity=0.262 Sum_probs=138.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCc-eEEEEEeeCCCEEEEEeCCCc-----EEEEEcccc------
Q 038577 356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNA-VTALHFMANNHSLLSASLDGT-----VRAWDLFRY------ 423 (860)
Q Consensus 356 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~i~~~~~~~~l~s~~~dg~-----i~~wd~~~~------ 423 (860)
+|++.+..++.|+.+|.|.+++ ++-+.+..+..+... |..+....+..+|++.+.|+. +++|++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999998887 334445777777777 555544444468888887764 899999653
Q ss_pred cee---eEee--CC-CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC----CceEEEecCcccCeEEEEEcCCCCEEE
Q 038577 424 RNF---RTFT--TP-SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT----GRLLDILSGHEGPVHGLVFSPTNATLA 493 (860)
Q Consensus 424 ~~~---~~~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~----~~~~~~~~~h~~~v~~l~~s~~~~~l~ 493 (860)
.+. +.+. .+ .+.++.+++++.+-+.+|+|-.+| .|..+.-+- |........-..+|+++++..+++.++
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG-~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNG-LVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCc-EEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 222 2222 22 355788899999999999999998 888875331 221222223467999999999988744
Q ss_pred EEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577 494 SSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 494 s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 558 (860)
.+..-..|.+|.+....+... ...|..++.|..+++....+++++ +..+.+|+.....+-..+.
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 444566799999985543333 456788899999997666466665 4459999988665555555
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.04 E-value=1.6e-07 Score=92.16 Aligned_cols=221 Identities=17% Similarity=0.164 Sum_probs=146.5
Q ss_pred CCcEEEEEccCceEEEEecCc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCE
Q 038577 328 LGQLLVWEWRSESYILKQQGH--YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHS 405 (860)
Q Consensus 328 ~g~i~v~d~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 405 (860)
+|.|..||..+++.+...... .....+. ..+++..+++++.++.+..||..+|+.+..+.. ...+.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 489999999999998887531 1122211 333566788888999999999999999887765 22222112 223456
Q ss_pred EEEEeCCCcEEEEEccccceeeEe-eCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC---
Q 038577 406 LLSASLDGTVRAWDLFRYRNFRTF-TTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP--- 479 (860)
Q Consensus 406 l~s~~~dg~i~~wd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~--- 479 (860)
++.++.++.+..+|..+++..... .... ............+..++++..++ .+..+|.++|+.+........+
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG-KLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS-EEEEEETTTTEEEEEEESSTT-SS-
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC-cEEEEecCCCcEEEEeecCCCCCCc
Confidence 777778889999999999988874 3221 11122223333378888888777 9999999999998887654422
Q ss_pred -------eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCc
Q 038577 480 -------VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGE 552 (860)
Q Consensus 480 -------v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 552 (860)
+..-....++ .+..++.++.+.-+|+.+++...... ...+.. ...+++..|++++.++.+..||+.+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1222222344 77777777764444999998553222 222222 245677888888899999999999999
Q ss_pred eeEE
Q 038577 553 LMYT 556 (860)
Q Consensus 553 ~~~~ 556 (860)
.+.+
T Consensus 234 ~~W~ 237 (238)
T PF13360_consen 234 VVWQ 237 (238)
T ss_dssp EEEE
T ss_pred EEeE
Confidence 8754
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-08 Score=98.99 Aligned_cols=255 Identities=15% Similarity=0.147 Sum_probs=185.7
Q ss_pred cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCc
Q 038577 187 GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSK 266 (860)
Q Consensus 187 ~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (860)
-|.+.|+.+.-+... ++.+++-||.++.|.-..-. .+.-...+..|-..
T Consensus 7 mhrd~i~hv~~tka~------fiiqASlDGh~KFWkKs~is-------------------------GvEfVKhFraHL~~ 55 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAK------FIIQASLDGHKKFWKKSRIS-------------------------GVEFVKHFRAHLGV 55 (558)
T ss_pred cccceeeeEeeehhh------eEEeeecchhhhhcCCCCcc-------------------------ceeehhhhHHHHHH
Confidence 377777777655433 89999999999999654311 11223455667778
Q ss_pred eEEEEecCCCCEEEEEEc-CCeEEEEECCCceeEEEEeecCceeEEEEEeeCC---CEEEEEEccCCcEEEEEccCce-E
Q 038577 267 VTACDYHRGLDMVVVGFS-NGVFGLYQMPDFVCIHLLSISREKITTAVFNELG---NWLVFGCAKLGQLLVWEWRSES-Y 341 (860)
Q Consensus 267 v~~~~~~~~~~~l~~~~~-~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~l~~~~~~~g~i~v~d~~~~~-~ 341 (860)
+.+++.+-++..+.++.. |..++++|+.+...+..++...-+-.+-.+...| ..++++..++|.+.++|-.... .
T Consensus 56 I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q 135 (558)
T KOG0882|consen 56 ILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQ 135 (558)
T ss_pred HHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCc
Confidence 899999999999998777 9999999998777665444433222222223333 2566666778999999976543 2
Q ss_pred -EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC------Cee---------EEEeecCCCceEEEEEeeCCCE
Q 038577 342 -ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS------GFC---------FVTFTEHTNAVTALHFMANNHS 405 (860)
Q Consensus 342 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~------~~~---------~~~~~~~~~~v~~i~~~~~~~~ 405 (860)
...-.-|..+|.++.+++.+..+++....|.|.-|.... ... +..+........++.|+|++..
T Consensus 136 ~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 136 DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred cceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 223356999999999999999999999999999998762 111 1122234567889999999999
Q ss_pred EEEEeCCCcEEEEEccccceeeEeeCC--------------------------------CCCcEEEEEECCCCCEEEEEe
Q 038577 406 LLSASLDGTVRAWDLFRYRNFRTFTTP--------------------------------SSRQFVSLASDQSGEVICAGT 453 (860)
Q Consensus 406 l~s~~~dg~i~~wd~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~l~~~~ 453 (860)
+.+-+.|..|+++++.+++..+.+... .......+.|+..|++|+.++
T Consensus 216 istl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 216 ISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred ccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 999999999999999888765544321 112345678999999999998
Q ss_pred cCCCeEEEEECCCCceEEEec
Q 038577 454 LDSFEIFVWSMKTGRLLDILS 474 (860)
Q Consensus 454 ~~~~~i~v~d~~~~~~~~~~~ 474 (860)
.-| |++.++.++...+.+.
T Consensus 296 ~~g--ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 296 ILG--IKVINLDTNTVVRILG 314 (558)
T ss_pred cee--EEEEEeecCeEEEEec
Confidence 875 9999999998887764
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.03 E-value=2.1e-07 Score=91.32 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=146.5
Q ss_pred CCcEEEEECCCCeeEEEeecCC--CceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCC
Q 038577 370 DNKVKVWTVSSGFCFVTFTEHT--NAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGE 447 (860)
Q Consensus 370 dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (860)
+|.|..||..+|+.+....... ....+. ..+++..+++++.++.+..||..+++.......+...... ....+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---PVVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---EEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce---eeeccc
Confidence 6889999999999988875411 222211 3335667888889999999999999988888764432222 123455
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEe-cCcc---cCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCC--
Q 038577 448 VICAGTLDSFEIFVWSMKTGRLLDIL-SGHE---GPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHD-- 521 (860)
Q Consensus 448 ~l~~~~~~~~~i~v~d~~~~~~~~~~-~~h~---~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-- 521 (860)
.++++..++ .++.+|..+|+.+... .... ..........++..++.+..++.|..+|..+++.+.........
T Consensus 78 ~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RVYVGTSDG-SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEEEEETTS-EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred cccccccee-eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 566666776 9999999999998874 3221 11222333334888888888999999999999876655442211
Q ss_pred --------eEEEEEeeCCCEEEEEeCCCe-EEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC
Q 038577 522 --------VLTVVYRPDGRQLACSTLDGQ-IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD 592 (860)
Q Consensus 522 --------v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 592 (860)
+..-....++ .++.++.+|. +.+ |+.+++.+.... ... +.. ....+
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~---------------------~~~-~~~~~ 211 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISG---------------------IYS-LPSVD 211 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS----------------------ECE-CEECC
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCC---------------------ccC-Cceee
Confidence 1222222245 7777777875 555 999999765333 211 222 24567
Q ss_pred CCEEEEecCCCeEEEEECCCceEEE
Q 038577 593 GSYILAGGSSKYICMYDVADQVLLR 617 (860)
Q Consensus 593 g~~l~~~~~dg~v~vwd~~~~~~~~ 617 (860)
+..|++++.++.|..||+.+|+.+-
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEe
Confidence 8888888899999999999998764
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.03 E-value=1.4e-06 Score=85.52 Aligned_cols=219 Identities=17% Similarity=0.154 Sum_probs=146.0
Q ss_pred EEEEecC-CCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577 268 TACDYHR-GLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ 346 (860)
Q Consensus 268 ~~~~~~~-~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~ 346 (860)
.+.+|.+ ++.++++-...+.|..|+..++.... +.... ...+++...+..++++.. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEee
Confidence 3577888 66666666678999999998776543 22222 677778733355555544 566777988885544332
Q ss_pred C-----cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE-EEeCC
Q 038577 347 G-----HYFDVNCLAYSPDSQLLATGADD--------NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL-SASLD 412 (860)
Q Consensus 347 ~-----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~-s~~~d 412 (860)
. .....+.+++.|+|++.++.... |.|..++.. ++..... ..-.....++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeeccccc
Confidence 2 34567899999999977776543 557777776 5544333 3456678999999998775 55677
Q ss_pred CcEEEEEccccce----eeEee-CCCC-CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577 413 GTVRAWDLFRYRN----FRTFT-TPSS-RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS 486 (860)
Q Consensus 413 g~i~~wd~~~~~~----~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s 486 (860)
+.|..+++..... .+.+. .+.. .....++++.+|++.++....+ .|.++|.+ |+.+..+......+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~-~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG-RIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT-EEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC-EEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 8899999864322 22232 2222 2478899999998777666555 99999988 88888877665689999994
Q ss_pred -CCCCEEEEE
Q 038577 487 -PTNATLASS 495 (860)
Q Consensus 487 -~~~~~l~s~ 495 (860)
++.+.|...
T Consensus 234 g~~~~~L~vT 243 (246)
T PF08450_consen 234 GPDGKTLYVT 243 (246)
T ss_dssp STTSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 665555543
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=1.6e-06 Score=85.08 Aligned_cols=219 Identities=14% Similarity=0.073 Sum_probs=146.3
Q ss_pred EEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEeec
Q 038577 311 TAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYS-PDSQLLATGADDNKVKVWTVSSGFCFVTFTE 389 (860)
Q Consensus 311 ~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 389 (860)
++.|.+....|..+....+.|..|+..++......... ...+++. +++ .++.+.. +.+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---~~G~~~~~~~g-~l~v~~~-~~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---PNGMAFDRPDG-RLYVADS-GGIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---EEEEEEECTTS-EEEEEET-TCEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---CceEEEEccCC-EEEEEEc-CceEEEecCCCcEEEEeec
Confidence 56788866666666666699999999888765422222 6677777 565 5555555 4566669988865544433
Q ss_pred -----CCCceEEEEEeeCCCEEEEEeCC--------CcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577 390 -----HTNAVTALHFMANNHSLLSASLD--------GTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456 (860)
Q Consensus 390 -----~~~~v~~i~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (860)
.......+++.++|+..++.... |.+..++.. ++....... -.....++++|+++.|+++....
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEEEEEETTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchheeeccccc
Confidence 34568899999999977766543 456666665 333322222 33568999999999998777766
Q ss_pred CeEEEEECCCCce-------EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe-
Q 038577 457 FEIFVWSMKTGRL-------LDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR- 528 (860)
Q Consensus 457 ~~i~v~d~~~~~~-------~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s- 528 (860)
+.|+.|++..... ...+....+..-.+++..+|++.++....+.|.++|.. ++.+.........+++++|.
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 6999999863221 12222222347889999999988888888999999987 66555554444689999995
Q ss_pred eCCCEEEEEe
Q 038577 529 PDGRQLACST 538 (860)
Q Consensus 529 ~~~~~l~~~~ 538 (860)
++.+.|++.+
T Consensus 235 ~~~~~L~vTt 244 (246)
T PF08450_consen 235 PDGKTLYVTT 244 (246)
T ss_dssp TTSSEEEEEE
T ss_pred CCCCEEEEEe
Confidence 6767776654
No 301
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.02 E-value=1e-07 Score=87.33 Aligned_cols=157 Identities=19% Similarity=0.211 Sum_probs=119.3
Q ss_pred ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeE--EEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc-CceEE
Q 038577 266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCI--HLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR-SESYI 342 (860)
Q Consensus 266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~-~~~~~ 342 (860)
...++.|++.+..++++..+|.+.+.+....... +.++.|.-+.....|+.....++..+++|+.+..||++ .++.+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 3567889999999999999999997666554443 47888999999999999888999999999999999999 44555
Q ss_pred EE-ecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEECCC-CeeEEEeecCCCceEEEEEeeCCC-EEEEEeCCCcEEEE
Q 038577 343 LK-QQGHYFDVNCLAYSP-DSQLLATGADDNKVKVWTVSS-GFCFVTFTEHTNAVTALHFMANNH-SLLSASLDGTVRAW 418 (860)
Q Consensus 343 ~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~i~~~~~~~-~l~s~~~dg~i~~w 418 (860)
.. .+-|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-. -.+.|+.+.++|.-. .++.+..-.-.++.
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 44 356888899998876 477999999999999999984 55554432 457899999998542 23333333345666
Q ss_pred Ecccc
Q 038577 419 DLFRY 423 (860)
Q Consensus 419 d~~~~ 423 (860)
+....
T Consensus 282 ~~~~~ 286 (339)
T KOG0280|consen 282 DSSDK 286 (339)
T ss_pred Eeccc
Confidence 66544
No 302
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=121.55 Aligned_cols=225 Identities=15% Similarity=0.166 Sum_probs=166.9
Q ss_pred CeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccc
Q 038577 154 NYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDET 233 (860)
Q Consensus 154 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~ 233 (860)
+.......++...-|..+.. ......+-..|.++.=+|... +.++++.||.+++|....++.
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~--------~~~~k~~v~~v~r~~sHp~~~-----~Yltgs~dgsv~~~~w~~~~~----- 2242 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGA--------SVMIKHPVENVRRMTSHPSDP-----YYLTGSQDGSVRMFEWGHGQQ----- 2242 (2439)
T ss_pred ccCCcccCCccccceecccc--------eeEeecccCceeeecCCCCCc-----eEEecCCCceEEEEeccCCCe-----
Confidence 33333444455555544433 334455666777777778777 999999999999998877543
Q ss_pred cCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEE
Q 038577 234 MEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAV 313 (860)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~ 313 (860)
+-.|+. .....++.+.|+.+|+.+.++..||.+.+|... .+.....+.|........
T Consensus 2243 ---------------v~~~rt-------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2243 ---------------VVCFRT-------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred ---------------EEEeec-------cCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcccccee
Confidence 122221 123789999999999999999999999999995 666677778888888888
Q ss_pred EeeCCCEEEEEE--ccCCcEEEEEccCc---eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577 314 FNELGNWLVFGC--AKLGQLLVWEWRSE---SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388 (860)
Q Consensus 314 ~s~~~~~l~~~~--~~~g~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 388 (860)
|-. ..++.++ .+++.+.+||.--. ..+. ..|.+.++++++-|..+.|++|+.+|.|++||++..+.+..++
T Consensus 2300 Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2300 FIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred eee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 876 3344433 45689999996432 2233 7899999999999999999999999999999998777666554
Q ss_pred cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC
Q 038577 389 EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS 433 (860)
Q Consensus 389 ~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 433 (860)
. +. ...++++++..|.++||++.....+..++..+
T Consensus 2376 ~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2376 A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred h---------hh-hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 3 33 45689999999999999998877776665443
No 303
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.01 E-value=4.1e-08 Score=102.57 Aligned_cols=111 Identities=11% Similarity=0.146 Sum_probs=91.1
Q ss_pred eeEEEEcCCCCEEEEEcC----CCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccc
Q 038577 55 ICRIAVSPDGTFLLTVDE----NQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVF 129 (860)
Q Consensus 55 v~~va~spdg~~la~~~~----d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~ 129 (860)
-+-..|+|...++|+++. .|.|.|+- ++|++-+....+-.+++++|+|..-.||.| .-|.+.+|...+.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~--- 93 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET--- 93 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCcee---
Confidence 355679999999988754 48888884 677766555556667889999999999999 779999999887763
Q ss_pred eeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577 130 AFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK 173 (860)
Q Consensus 130 ~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~ 173 (860)
......|+.+|..+.|||+|..|+++..-|.|.+|..+..
T Consensus 94 ----htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~ 133 (1416)
T KOG3617|consen 94 ----HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVI 133 (1416)
T ss_pred ----eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeec
Confidence 3445579999999999999999999999999999998743
No 304
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=4e-06 Score=75.80 Aligned_cols=143 Identities=17% Similarity=0.127 Sum_probs=100.2
Q ss_pred CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEE
Q 038577 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCL 355 (860)
Q Consensus 276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~ 355 (860)
..++++|+..+.+.-.|..+++........ .++.+-+.- -|+.++.++.. |.+++.+.++|.....+.....--...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~-g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYS-GGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEcc-CcEEEEEecchhheeeeeehhhhccce
Confidence 456778999999999999998877543322 233333332 57778888887 999999999998887775433322334
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcc
Q 038577 356 AYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLF 421 (860)
Q Consensus 356 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~ 421 (860)
...+++..+..|+.|++.+..|..+..++...+-..+...+-++.|....|..+...|.+.--..+
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 567789999999999999999999998888876555544555566633345555555655444433
No 305
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.5e-09 Score=105.79 Aligned_cols=284 Identities=15% Similarity=0.233 Sum_probs=188.8
Q ss_pred EEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-------ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 299 IHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS-------ESYILKQQGHYFDVNCLAYSPDSQLLATGADDN 371 (860)
Q Consensus 299 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 371 (860)
+..+.+|+..|+.++--.+.+.++.++.+ .++++|.++. ..+..+++.|..+|..+.|-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkD-KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKD-KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCC-ceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 34566777788887777777777777655 9999999864 24667778999999999999998887754 78
Q ss_pred cEEEEECCCCeeEEEeec--CCCceEEEEEeeC--CCEEEEE-eCCCcEEEEEccccceeeEeeCC----CCCcEEEEEE
Q 038577 372 KVKVWTVSSGFCFVTFTE--HTNAVTALHFMAN--NHSLLSA-SLDGTVRAWDLFRYRNFRTFTTP----SSRQFVSLAS 442 (860)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~--~~~~v~~i~~~~~--~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~ 442 (860)
.|.+||.--++.+..+.. ..+.+..+...++ ...++.+ +...+++++|.+...-...+... ....+.++++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999999877766653321 2223333333333 3344444 67889999999887665555432 2245789999
Q ss_pred CCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEE-EEccCCcceeEEcccCCC
Q 038577 443 DQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRL-WNVFEGKGSVESFPHTHD 521 (860)
Q Consensus 443 ~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~i-wd~~~~~~~~~~~~~~~~ 521 (860)
.+.|+.++++-.+| .|.+.|.++|+.+...+.-.-....++- |..+.|+....|.++.+ |-..++....+..+...+
T Consensus 885 a~~GN~lAa~LSnG-ci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNG-CIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred ccCcchhhHHhcCC-cEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 99999999999998 9999999999998877655544544543 55667887778888888 877666544443333322
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEeCCCC----ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEE
Q 038577 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNG----ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYIL 597 (860)
Q Consensus 522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 597 (860)
..-+ -.-|.-|+++.....+.+|.-... ..+..++.. ...+..++++--|-..-++
T Consensus 963 ahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d------------------~f~G~lTala~LPLN~afL 1022 (1034)
T KOG4190|consen 963 AHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPD------------------EFPGTLTALAPLPLNCAFL 1022 (1034)
T ss_pred hhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhcccccc------------------ccCCccceeeeccccchhh
Confidence 2111 113445677766666777742110 011111111 1123468888888777777
Q ss_pred EecCCCeEEE
Q 038577 598 AGGSSKYICM 607 (860)
Q Consensus 598 ~~~~dg~v~v 607 (860)
.|.+.|.|.+
T Consensus 1023 aGne~G~IaL 1032 (1034)
T KOG4190|consen 1023 AGNEHGAIAL 1032 (1034)
T ss_pred ccCCCCceee
Confidence 7888888765
No 306
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=7.4e-09 Score=106.29 Aligned_cols=294 Identities=16% Similarity=0.234 Sum_probs=198.7
Q ss_pred eecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCC--CeEEEeecCCeEEE
Q 038577 90 VRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDS--NYLLVGSKDLAVRL 167 (860)
Q Consensus 90 ~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~--~~l~s~~~dg~v~v 167 (860)
++..+++.++..+|.|+-+|.+....+.+-|+..... ++..++.+. .-.|-...|+|.. .+-++......-.+
T Consensus 21 l~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~---ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkaii 95 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFT---PPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAII 95 (1081)
T ss_pred EEecCcccceeeccccchhhhhhhcCeEEEeccCCCC---CceeeeccC--cchhcceecccCCCCceeEEecCcchhhh
Confidence 3457889999999999999999777777888776432 222222221 2236677888854 34444444556779
Q ss_pred EeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcc
Q 038577 168 FYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPER 247 (860)
Q Consensus 168 wd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (860)
|++...... .....+.+|...|+.+.|.|.... .+++++.|-.+..||+.+...
T Consensus 96 wnlA~ss~~---aIef~lhghsraitd~n~~~q~pd----Vlatcsvdt~vh~wd~rSp~~------------------- 149 (1081)
T KOG0309|consen 96 WNLAKSSSN---AIEFVLHGHSRAITDINFNPQHPD----VLATCSVDTYVHAWDMRSPHR------------------- 149 (1081)
T ss_pred hhhhcCCcc---ceEEEEecCccceeccccCCCCCc----ceeeccccccceeeeccCCCc-------------------
Confidence 998866333 566788999999999999887664 899999999999999987432
Q ss_pred eeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCc-eeEEEEeecCceeEEEEEeeCCCEEEEEEc
Q 038577 248 RVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDF-VCIHLLSISREKITTAVFNELGNWLVFGCA 326 (860)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 326 (860)
.+.. +.........+.|+-....+.+.+....|.+||...+ ..+..++.+...+..+.|...-...+..++
T Consensus 150 p~ys--------~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 150 PFYS--------TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred ceee--------eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC
Confidence 0111 1122334566777776666777778889999998755 566788888888999999876666666667
Q ss_pred cCCcEEEEEccCceEEEEe-cCcccCeEEEEEcCCCCEEEEE--eCCCcEEE---------EECCC-CeeEEEeecCCCc
Q 038577 327 KLGQLLVWEWRSESYILKQ-QGHYFDVNCLAYSPDSQLLATG--ADDNKVKV---------WTVSS-GFCFVTFTEHTNA 393 (860)
Q Consensus 327 ~~g~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~i---------wd~~~-~~~~~~~~~~~~~ 393 (860)
.||+|+.||.......... .....+|..-.+.|=|.-.++- -.+..+.+ |+..+ ...+..|.+|.+.
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~ 301 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV 301 (1081)
T ss_pred CCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH
Confidence 7799999998764332221 2234456555666643322211 11123333 33332 4678899999999
Q ss_pred eEEEEEeeCC----------CEEEEEeCCCcEEEEEccc
Q 038577 394 VTALHFMANN----------HSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 394 v~~i~~~~~~----------~~l~s~~~dg~i~~wd~~~ 422 (860)
|....|-..+ -.|++-+.|..+++|-+.+
T Consensus 302 V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 302 VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 8877774321 2699999999999998853
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.97 E-value=1.4e-06 Score=84.35 Aligned_cols=277 Identities=16% Similarity=0.195 Sum_probs=173.8
Q ss_pred CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEc----------CCCcEEEEEcccCeEEEEeecCC-------
Q 038577 32 NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVD----------ENQRCHFINLHCHVVLHRVRFKY------- 94 (860)
Q Consensus 32 ~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~----------~d~~i~vwd~~~~~~~~~~~~~~------- 94 (860)
+++.++|..+++.+... ..+-.-.+.+||||+.+++++ ..-.|.+||..+-.....+..+.
T Consensus 17 ~rv~viD~d~~k~lGmi--~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMI--DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEE--EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEe--ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 58999999999987665 233445688999999998752 23468899999998888776222
Q ss_pred -ceeEEEECCCCCEEEEE---eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577 95 -PVNAILFSPNGKYIAVG---TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170 (860)
Q Consensus 95 -~v~~~~fspdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~ 170 (860)
....+++|.||+++.+. ...+|.|-|+..++ .+..+. -.+. ..+--++ .+.+.+-|.||.+.-..+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-------vv~ei~-~PGC-~~iyP~~-~~~F~~lC~DGsl~~v~L 164 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-------VVGEID-TPGC-WLIYPSG-NRGFSMLCGDGSLLTVTL 164 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-------EEEEEE-GTSE-EEEEEEE-TTEEEEEETTSCEEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCc-------eeeeec-CCCE-EEEEecC-CCceEEEecCCceEEEEE
Confidence 23467899999999988 45789999999876 233333 2222 2221122 245788889999999999
Q ss_pred cccccCcccccceEeecCCCcEE-EEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCccee
Q 038577 171 KEKLKGIHTNKPFLLLGHRDSVV-GCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRV 249 (860)
Q Consensus 171 ~~~~~~~~~~~~~~~~~h~~~i~-~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (860)
+...+.. ......+....+++. .-++...+. .++-.+.+|.|+--++..... .-.
T Consensus 165 d~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~~-----~~~F~Sy~G~v~~~dlsg~~~------------------~~~ 220 (342)
T PF06433_consen 165 DADGKEA-QKSTKVFDPDDDPLFEHPAYSRDGG-----RLYFVSYEGNVYSADLSGDSA------------------KFG 220 (342)
T ss_dssp TSTSSEE-EEEEEESSTTTS-B-S--EEETTTT-----EEEEEBTTSEEEEEEETTSSE------------------EEE
T ss_pred CCCCCEe-EeeccccCCCCcccccccceECCCC-----eEEEEecCCEEEEEeccCCcc------------------ccc
Confidence 8552221 111112222222222 233444444 677788899999988877532 112
Q ss_pred eeEEeeee----ccccCCCCceEEEEecCCCCEEEEEEcC----------CeEEEEECCCceeEEEEeecCceeEEEEEe
Q 038577 250 KKWGLLRK----DDFSQAPSKVTACDYHRGLDMVVVGFSN----------GVFGLYQMPDFVCIHLLSISREKITTAVFN 315 (860)
Q Consensus 250 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~~----------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s 315 (860)
..|.+... ..+. ++.-.-+++++..++|++.-.. ..|.++|+.+++.+..+... .++.++..+
T Consensus 221 ~~~~~~t~~e~~~~Wr--PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vs 297 (342)
T PF06433_consen 221 KPWSLLTDAEKADGWR--PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVS 297 (342)
T ss_dssp EEEESS-HHHHHTTEE--E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEE
T ss_pred CcccccCccccccCcC--CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEc
Confidence 34544321 1111 2234456777777666654322 35889999999999988864 368899999
Q ss_pred eCCCEEEEE-EccCCcEEEEEccCceEEEEecC
Q 038577 316 ELGNWLVFG-CAKLGQLLVWEWRSESYILKQQG 347 (860)
Q Consensus 316 ~~~~~l~~~-~~~~g~i~v~d~~~~~~~~~~~~ 347 (860)
.+.+-++++ ...++.+.+||..+++.+.....
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 998876655 45568999999999999888754
No 308
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.95 E-value=1.2e-06 Score=90.80 Aligned_cols=299 Identities=15% Similarity=0.141 Sum_probs=169.5
Q ss_pred cCCCCEEEEE---------cCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCccccee
Q 038577 61 SPDGTFLLTV---------DENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAF 131 (860)
Q Consensus 61 spdg~~la~~---------~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~ 131 (860)
|||+++++.. +..+.+.|+|+.+++..........+....|||||+.+|...++.|.+++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~----- 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQE----- 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEE-----
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCe-----
Confidence 7899988874 23468899999998776655556789999999999999999999999999877642
Q ss_pred EEEEEee--c-------c---------CCCeEEEEEcCCCCeEEEeec-CCeEEEEeecccccCcccccceEeecCCCcE
Q 038577 132 ELIRTLA--D-------C---------NDKVTALNWSPDSNYLLVGSK-DLAVRLFYVKEKLKGIHTNKPFLLLGHRDSV 192 (860)
Q Consensus 132 ~~~~~~~--~-------h---------~~~v~~l~~s~d~~~l~s~~~-dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i 192 (860)
..+. | - -+.-..+-|||||++||.... +..|..+.+...... .. .--.+
T Consensus 76 ---~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~---~~------~yp~~ 143 (353)
T PF00930_consen 76 ---TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPP---DS------QYPEV 143 (353)
T ss_dssp ---EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSS---TE------SS-EE
T ss_pred ---EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCc---cc------cCCcc
Confidence 2222 2 0 122367889999999988654 445555544332000 00 00123
Q ss_pred EEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEe
Q 038577 193 VGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDY 272 (860)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 272 (860)
..+.+-.-|. .- ..-.+.++++.++... .+............+..+.|
T Consensus 144 ~~~~YPk~G~-----~n----p~v~l~v~~~~~~~~~-----------------------~~~~~~~~~~~~~yl~~v~W 191 (353)
T PF00930_consen 144 ESIRYPKAGD-----PN----PRVSLFVVDLASGKTT-----------------------ELDPPNSLNPQDYYLTRVGW 191 (353)
T ss_dssp EEEE--BTTS------------EEEEEEEESSSTCCC-----------------------EE---HHHHTSSEEEEEEEE
T ss_pred cccccCCCCC-----cC----CceEEEEEECCCCcEE-----------------------EeeeccccCCCccCccccee
Confidence 3344433332 11 1123556666654320 00111112234557889999
Q ss_pred cCCCCEEEEEEcC-----CeEEEEECCCceeEEEEeecC-c---eeEEEEEe-eCCCEEEEEEccCCcE--EEEEccCce
Q 038577 273 HRGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISR-E---KITTAVFN-ELGNWLVFGCAKLGQL--LVWEWRSES 340 (860)
Q Consensus 273 ~~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~-~---~i~~~~~s-~~~~~l~~~~~~~g~i--~v~d~~~~~ 340 (860)
.++++.+++...+ ..+.++|..++.......... . ......+. +++..++.....+|.- .+++...+.
T Consensus 192 ~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 192 SPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp EETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred cCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence 9999855544333 346667776665543333222 2 22355555 7887777777777754 445555555
Q ss_pred EEEEecCcccCeEE-EEEcCCCCEEE-EEeCC----CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEE
Q 038577 341 YILKQQGHYFDVNC-LAYSPDSQLLA-TGADD----NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSA 409 (860)
Q Consensus 341 ~~~~~~~~~~~v~~-~~~s~~~~~l~-~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~ 409 (860)
.. .+....-.|.. +.++++++.+. ++..+ ..+...++..+.....+......-..+.|+|++++++..
T Consensus 272 ~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 272 PR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp EE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred ee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 33 44444555644 67888877665 44432 245555666244455555444443689999999887744
No 309
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.93 E-value=8e-06 Score=73.92 Aligned_cols=300 Identities=14% Similarity=0.122 Sum_probs=162.4
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCe
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGV 287 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~ 287 (860)
+++.++..+.+..-|..++.. .|+..... ++.+-+.- -|+.++.|..+|.
T Consensus 25 ~v~igSHs~~~~avd~~sG~~----------------------~We~ilg~-------RiE~sa~v-vgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNL----------------------IWEAILGV-------RIECSAIV-VGDFVVLGCYSGG 74 (354)
T ss_pred EEEEecCCceEEEecCCCCcE----------------------EeehhhCc-------eeeeeeEE-ECCEEEEEEccCc
Confidence 777888888888888777643 56433221 22222222 4778999999999
Q ss_pred EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEE
Q 038577 288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATG 367 (860)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 367 (860)
+++.+.++++....+.....--......+++..+..++.+ ++.+..|.++...+.+.+...+...+-++.|....|..+
T Consensus 75 lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd-~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHD-GNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred EEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCC-CcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence 9999999998887776655433445566777777777665 999999999998888765544444445556633344444
Q ss_pred eCCCcEEEEECCCCeeEEEeec--CCCceEE--EEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC---------
Q 038577 368 ADDNKVKVWTVSSGFCFVTFTE--HTNAVTA--LHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS--------- 434 (860)
Q Consensus 368 ~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~--i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--------- 434 (860)
...|.+.--+.+++... ++-. -.+++.+ ++. +..+..+.-||.+.-++ ..++.+..+....+
T Consensus 154 ~t~G~vlavt~~~~~~~-~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~ 228 (354)
T KOG4649|consen 154 ITAGAVLAVTKNPYSST-EFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESR 228 (354)
T ss_pred eccceEEEEccCCCCcc-eehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecCCCceecccccCC
Confidence 55565554444433111 1111 1122221 111 22344455566666555 34444443332221
Q ss_pred CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEc-C---CCCEEEEEeCCCcEEEEEccCCc
Q 038577 435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFS-P---TNATLASSSWDKTVRLWNVFEGK 510 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-~---~~~~l~s~~~dg~i~iwd~~~~~ 510 (860)
.....+.+...+-+.+.....+ -.+|..++|...+.+-... ...+++ | ..++|..++.||.+.|.-...
T Consensus 229 Ps~q~i~~~~~~Cf~~~~p~~g--hL~w~~~~g~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~-- 301 (354)
T KOG4649|consen 229 PSCQQISLENENCFCAPLPIAG--HLLWATQSGTTLHVYLSPK---LRFDLHSPGISYPKLLRRSSGDGKVMILMTSK-- 301 (354)
T ss_pred CcceEEEEecCCeEEEeccccc--eEEEEecCCcEEEEEeCcc---cceeccCCCCcchhhhhhhcCCCcEEEEEecc--
Confidence 1112222222333322222222 3455555554333321110 112221 1 135677788899887764322
Q ss_pred ceeEEcccCCCeEEEE--------E-ee---CCCEEEEEeCCCeEEEEeCCCC
Q 038577 511 GSVESFPHTHDVLTVV--------Y-RP---DGRQLACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 511 ~~~~~~~~~~~v~~~~--------~-s~---~~~~l~~~~~dg~i~iwd~~~~ 551 (860)
.+.+...+.+.+..+. | || +| +|+.|+.|..++.||+.++
T Consensus 302 sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 302 SLAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred cccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEecccc
Confidence 2333333333322222 1 22 44 5888889999999999875
No 310
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=2.1e-08 Score=90.00 Aligned_cols=201 Identities=16% Similarity=0.244 Sum_probs=119.7
Q ss_pred CCCEEEEEeCCCcEEEEEcccccee-eEeeCCCCCcEEEEEECCCCCEEEEE------ecCCCeEEEEECCCCceEEEec
Q 038577 402 NNHSLLSASLDGTVRAWDLFRYRNF-RTFTTPSSRQFVSLASDQSGEVICAG------TLDSFEIFVWSMKTGRLLDILS 474 (860)
Q Consensus 402 ~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~i~v~d~~~~~~~~~~~ 474 (860)
-++.+++++.||.+.+++.+..... +.+...+. ...+.+....++++.++ ..| ..+.|+++..+.+..-.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d--~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQD--NFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEEecCCcceEeecc--ceeeecccccccccccc
Confidence 4567999999999999997652211 11111111 11122222334444332 222 46677766544332222
Q ss_pred CcccCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEee-CCCEEEEEeCCCeEEEEeCCCC
Q 038577 475 GHEGPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRP-DGRQLACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 475 ~h~~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~ 551 (860)
.....|++++-+|.. ..+++|+.||.+.+||.+....+.. +..|..+++.+-|+| ++..|+++++||.+--||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~- 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST- 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-
Confidence 223449999999965 5577888899999999988754433 347999999999999 778999999999999999865
Q ss_pred ceeEEEecc----cccCCCccccccc--cccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 552 ELMYTIEGR----RDISGGRLMTDRR--SAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 552 ~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
+.+. +... ..+..+....++. ....+.....|++ |.--|..|++|++-+.|++++
T Consensus 256 ~~l~-i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 256 TFLS-ISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEE-ecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 3332 2111 1111111111111 1111222233444 344688899999988888875
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.92 E-value=1.3e-06 Score=91.72 Aligned_cols=262 Identities=13% Similarity=0.060 Sum_probs=159.8
Q ss_pred EEEEEcCCeEEEEECCCceeEEEEeecC-------------ceeE-----------------EEEE---eeCCCEEEEEE
Q 038577 279 VVVGFSNGVFGLYQMPDFVCIHLLSISR-------------EKIT-----------------TAVF---NELGNWLVFGC 325 (860)
Q Consensus 279 l~~~~~~g~i~~~~~~~~~~~~~~~~~~-------------~~i~-----------------~~~~---s~~~~~l~~~~ 325 (860)
+.+|+..|.++++-+++++.+..+.... ..+. .+.+ ..||+++++-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 5688889999999999888776654321 0111 1111 13678888776
Q ss_pred ccCCcEEEEEccCceEEEEec------Ccc---------cCeE-----EEEEcCCCCEEEEEe-CCCcEEEEECCCCeeE
Q 038577 326 AKLGQLLVWEWRSESYILKQQ------GHY---------FDVN-----CLAYSPDSQLLATGA-DDNKVKVWTVSSGFCF 384 (860)
Q Consensus 326 ~~~g~i~v~d~~~~~~~~~~~------~~~---------~~v~-----~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~ 384 (860)
..++.+...+++..+.-.... .|. ..|. .+-++|||+.+...+ ..+.+.+.|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 666777777776554433221 121 1111 122345665543322 2456777788877766
Q ss_pred EEeecCCCceEEEEEeeCCCEEEEEeCCC----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEE
Q 038577 385 VTFTEHTNAVTALHFMANNHSLLSASLDG----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIF 460 (860)
Q Consensus 385 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 460 (860)
..+.-. +....+.++++|+++++.+.+. ++..-+..+......+.... .-.+.++|++..++ ++ .|.
T Consensus 229 ~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-----iea~vkdGK~~~V~--gn-~V~ 299 (635)
T PRK02888 229 WQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-----IEEAVKAGKFKTIG--GS-KVP 299 (635)
T ss_pred EEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-----HHHhhhCCCEEEEC--CC-EEE
Confidence 665433 3556788899999888776322 22222222111111111110 01334578877763 33 899
Q ss_pred EEECCC-----CceEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEEccCCcc-----------eeEEcccCCCeE
Q 038577 461 VWSMKT-----GRLLDILSGHEGPVHGLVFSPTNATLASSSW-DKTVRLWNVFEGKG-----------SVESFPHTHDVL 523 (860)
Q Consensus 461 v~d~~~-----~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-----------~~~~~~~~~~v~ 523 (860)
++|..+ .+.+..+. -......+.++|||+++++++. +.+|.|.|+.+.+. +.....-.....
T Consensus 300 VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL 378 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL 378 (635)
T ss_pred EEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc
Confidence 999998 34555554 4556788999999999876665 89999999987552 122222344456
Q ss_pred EEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 524 TVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 524 ~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
..+|.++|....+-.-|..|..|++.+
T Consensus 379 HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 379 HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEECCCCCEEEeEeecceeEEEehHH
Confidence 788999998888888899999999876
No 312
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=2.7e-08 Score=95.43 Aligned_cols=165 Identities=20% Similarity=0.183 Sum_probs=118.0
Q ss_pred ceEEEEecCCCCEEEEEEcCCeEEEEECCCcee---EEEEeecCceeEEEEEeeCCCEEEEEEc--cCCcEEEEEccCce
Q 038577 266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVC---IHLLSISREKITTAVFNELGNWLVFGCA--KLGQLLVWEWRSES 340 (860)
Q Consensus 266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~~--~~g~i~v~d~~~~~ 340 (860)
.......+|.++++|++..+....+++...... ......-....+.+.|..+.....++-. +...+.+|....+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 345566788899999999988877776543322 1122222334455666666655555433 33455566655543
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWD 419 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd 419 (860)
.. ..-+|-..+..++++||+++|+++..|..|++-.......+..+ -+|..-|..++.-++. .|+++|.|+++++||
T Consensus 144 ~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 144 CE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWD 221 (390)
T ss_pred cc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEe
Confidence 33 33589999999999999999999999999999887765555544 4699999999987654 589999999999999
Q ss_pred ccccceeeEeeCC
Q 038577 420 LFRYRNFRTFTTP 432 (860)
Q Consensus 420 ~~~~~~~~~~~~~ 432 (860)
+.+++...++...
T Consensus 222 ~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 222 ITSGKLLDTCDLS 234 (390)
T ss_pred cccCCcccccchh
Confidence 9999988766543
No 313
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.88 E-value=3.9e-08 Score=94.35 Aligned_cols=164 Identities=14% Similarity=0.156 Sum_probs=112.4
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEEccccce----eeEeeCCCCCcEEEEEECCCCCEEEEEe--cCCCeEEEEECCCC
Q 038577 394 VTALHFMANNHSLLSASLDGTVRAWDLFRYRN----FRTFTTPSSRQFVSLASDQSGEVICAGT--LDSFEIFVWSMKTG 467 (860)
Q Consensus 394 v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~v~d~~~~ 467 (860)
+..+..++.++.++.+..+....++++..... ......+. ...++.+..+...+.++. .|.+.+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~--~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPK--RPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeeccc--CcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34455667777777777777766766654332 22222222 234444444444443333 33335666666554
Q ss_pred ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577 468 RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFW 546 (860)
Q Consensus 468 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 546 (860)
... .+-||-..+++++++||+++++++..|..|++-.....-.+.. ..+|..-|..++.-++ ..|++++.|+++++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 443 4457999999999999999999999999999977655443333 3479999999999855 569999999999999
Q ss_pred eCCCCceeEEEeccc
Q 038577 547 DPLNGELMYTIEGRR 561 (860)
Q Consensus 547 d~~~~~~~~~~~~~~ 561 (860)
|+.+|+.+.+++...
T Consensus 221 d~~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 221 DITSGKLLDTCDLSS 235 (390)
T ss_pred ecccCCcccccchhH
Confidence 999999998776544
No 314
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.86 E-value=0.00032 Score=76.22 Aligned_cols=452 Identities=13% Similarity=0.155 Sum_probs=232.8
Q ss_pred cEEEe--CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEE--eec
Q 038577 17 NAVLS--QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHR--VRF 92 (860)
Q Consensus 17 ~~~~s--dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~--~~~ 92 (860)
.+..| .|+.|+-...+.|++++-. +.. ... .-.+.++..+.+.+...++.++.++.+...++..+..... ...
T Consensus 453 Tif~S~i~g~~lvQvTs~~iRl~ss~-~~~-~~W-~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~ 529 (1096)
T KOG1897|consen 453 TIFCSTINGNQLVQVTSNSIRLVSSA-GLR-SEW-RPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEF 529 (1096)
T ss_pred eEEEEccCCceEEEEecccEEEEcch-hhh-hcc-cCCCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeeehee
Confidence 34444 5555555555678887765 222 111 2335566666777777788777777777777765552222 226
Q ss_pred CCceeEEEECCCC------CEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeec--cCCCeEEEEEcCCCCeEEEeecC
Q 038577 93 KYPVNAILFSPNG------KYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLAD--CNDKVTALNWSPDSNYLLVGSKD 162 (860)
Q Consensus 93 ~~~v~~~~fspdg------~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~d~~~l~s~~~d 162 (860)
...|.|+.++|-| +++|+| .+-.+.+.-.+..... +...+.+ -...|....|--|..+|.++..|
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~-----~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgd 604 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI-----THEQLSGEIIPRSILLTTFEGDIHYLLVALGD 604 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee-----eeeccCCCccchheeeEEeeccceEEEEEcCC
Confidence 7889999999843 478888 4444444444433210 1111111 13345556666678999999999
Q ss_pred CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCC
Q 038577 163 LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSP 242 (860)
Q Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~ 242 (860)
|.+.-+.++.. .+........ .-...++.--.|+..+.+ .+++++ |+-..+|..+..-.
T Consensus 605 G~l~~fv~d~~-tg~lsd~Kk~-~lGt~P~~Lr~f~sk~~t----~vfa~s-drP~viY~~n~kLv-------------- 663 (1096)
T KOG1897|consen 605 GALLYFVLDIN-TGQLSDRKKV-TLGTQPISLRTFSSKSRT----AVFALS-DRPTVIYSSNGKLV-------------- 663 (1096)
T ss_pred ceEEEEEEEcc-cceEcccccc-ccCCCCcEEEEEeeCCce----EEEEeC-CCCEEEEecCCcEE--------------
Confidence 99988877665 2211111111 122345555566665552 444443 44444443332100
Q ss_pred CCCcceeeeEEeeeeccccCCCCceEE-EEec-CC-CCEEEEEEcCCeEEEEECCCceeE--EEEeecCceeEEEEEeeC
Q 038577 243 GTPERRVKKWGLLRKDDFSQAPSKVTA-CDYH-RG-LDMVVVGFSNGVFGLYQMPDFVCI--HLLSISREKITTAVFNEL 317 (860)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~-~~-~~~l~~~~~~g~i~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~ 317 (860)
+.. -.-..+.. +.|+ +. .+.++. ...+.+.+..++.-+.+ +++.. ......+++.+.
T Consensus 664 -----------~sp-----ls~kev~~~c~f~s~a~~d~l~~-~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~ 725 (1096)
T KOG1897|consen 664 -----------YSP-----LSLKEVNHMCPFNSDAYPDSLAS-ANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQES 725 (1096)
T ss_pred -----------Eec-----cchHHhhhhcccccccCCceEEE-ecCCceEEEEecchhhcceeeecC-CCChhheEeccc
Confidence 000 00000111 1111 11 122333 33444555555433322 22111 223444555442
Q ss_pred CCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecC----CCc
Q 038577 318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEH----TNA 393 (860)
Q Consensus 318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~ 393 (860)
...+.+.+.. .. .+.. .+.+ ...+ ..++++|-++-+.+....-. ...
T Consensus 726 sl~~~v~s~r-~e----------------~~~~-----~~~e--e~~~-----s~l~vlD~nTf~vl~~hef~~~E~~~S 776 (1096)
T KOG1897|consen 726 SLTFGVLSNR-IE----------------SSAE-----YYGE--EYEV-----SFLRVLDQNTFEVLSSHEFERNETALS 776 (1096)
T ss_pred ceEEEEEecc-cc----------------cchh-----hcCC--cceE-----EEEEEecCCceeEEeeccccccceeee
Confidence 2222222211 00 0000 0000 0010 13555665554433322111 113
Q ss_pred eEEEEEeeC-CCEEEEEe----------CCCcEEEEEccccceeeEeeC-CCCCcEEEEEECCCCCEEEEEecCCCeEEE
Q 038577 394 VTALHFMAN-NHSLLSAS----------LDGTVRAWDLFRYRNFRTFTT-PSSRQFVSLASDQSGEVICAGTLDSFEIFV 461 (860)
Q Consensus 394 v~~i~~~~~-~~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v 461 (860)
+.++.|..| +.+++.|. ..|.|.+|.+...+.++.... .-...+.++. --+|+++|.-+. .|++
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkllA~In~---~vrL 852 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKLLAGINQ---SVRL 852 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeEEEecCc---EEEE
Confidence 444456666 55666554 247788888777333333221 1122222222 124566554433 8999
Q ss_pred EECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc---ccCCCeEEEEEeeCCCEEEEEe
Q 038577 462 WSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGRQLACST 538 (860)
Q Consensus 462 ~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~ 538 (860)
|+..+.+.++.-..|..++..+...-.|..++.|.-=+.+.+-..+..+...... -++...+++.+-.+ ...+.+.
T Consensus 853 ye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~-d~ylgae 931 (1096)
T KOG1897|consen 853 YEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDD-DTYLGAE 931 (1096)
T ss_pred EEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecC-ceEEeec
Confidence 9999998887777788999999999999999999888877776655544222222 36777888888744 4556666
Q ss_pred CCCeEEEEeCC
Q 038577 539 LDGQIHFWDPL 549 (860)
Q Consensus 539 ~dg~i~iwd~~ 549 (860)
.+|.+.+-..+
T Consensus 932 ~~gNlf~v~~d 942 (1096)
T KOG1897|consen 932 NSGNLFTVRKD 942 (1096)
T ss_pred ccccEEEEEec
Confidence 78887777654
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=2.2e-09 Score=112.27 Aligned_cols=201 Identities=19% Similarity=0.241 Sum_probs=149.5
Q ss_pred EEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC--cEEEEEc
Q 038577 343 LKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG--TVRAWDL 420 (860)
Q Consensus 343 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg--~i~~wd~ 420 (860)
..+..|....+|++|+.+.++|++|+..|.|++|++.+|........|.++|+.+.-+.+|..+++.+.-. -..+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 34566778899999999999999999999999999999999999999999999999999998777655433 4678988
Q ss_pred cc-cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEe-cC---cccCeEEEEEcCCCCEEEEE
Q 038577 421 FR-YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDIL-SG---HEGPVHGLVFSPTNATLASS 495 (860)
Q Consensus 421 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~-~~---h~~~v~~l~~s~~~~~l~s~ 495 (860)
.. +.....+. .-.++.|+..-..-++|+... ...+||++++.++.++ .+ ..-.-+...|+|+.+++.
T Consensus 1175 ~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d-~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEAD-DALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred ccccCcccccc-----ccceeehhhhHHHHHhccccc-ceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 64 22222222 235667777666666666666 8999999999877663 21 122236788999988776
Q ss_pred eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecc
Q 038577 496 SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGR 560 (860)
Q Consensus 496 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 560 (860)
.|| .+||++..+.+..+.... .-..-.|+|.|..++.-+ .|||+++.++++.++.-
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHHhcCccc
Confidence 466 689998876554444333 223346999999888765 59999999888776543
No 316
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=1.1e-07 Score=87.55 Aligned_cols=252 Identities=15% Similarity=0.275 Sum_probs=167.3
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-----eEEEeecCC------------CceEEEEEeeCC--CEEEEE
Q 038577 349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-----CFVTFTEHT------------NAVTALHFMANN--HSLLSA 409 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~i~~~~~~--~~l~s~ 409 (860)
...|+++.|...|.++++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4568999999999999999999999999755322 222344443 357788887654 467777
Q ss_pred eCCCcEEEEEccccc------------------------------------------eeeEeeCCCCCcEEEEEECCCCC
Q 038577 410 SLDGTVRAWDLFRYR------------------------------------------NFRTFTTPSSRQFVSLASDQSGE 447 (860)
Q Consensus 410 ~~dg~i~~wd~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 447 (860)
+.|.+|++|.+.... +.+.....++..+.++.+..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 889999999984321 00111123344577888888888
Q ss_pred EEEEEecCCCeEEEEECCCCce---EEEecCcc-----cCeEEEEEcCCC-CEEEEEeCCCcEEEEEccCCccee-----
Q 038577 448 VICAGTLDSFEIFVWSMKTGRL---LDILSGHE-----GPVHGLVFSPTN-ATLASSSWDKTVRLWNVFEGKGSV----- 513 (860)
Q Consensus 448 ~l~~~~~~~~~i~v~d~~~~~~---~~~~~~h~-----~~v~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~----- 513 (860)
.++++..- .|-+|++.-... +..++.|. .-|++..|+|.. ..+...+..|.|++-|++....+.
T Consensus 186 t~lSaDdL--rINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLLSADDL--RINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eeeeccce--eeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 87766443 799999874321 23334443 457888999964 456667778999999997433111
Q ss_pred -E----------EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecccccCCCccccccccccccCCC
Q 038577 514 -E----------SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG-ELMYTIEGRRDISGGRLMTDRRSAANSSSG 581 (860)
Q Consensus 514 -~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (860)
+ +.+-...|..+.|+++|+++++-+. -++++||++.. .++.+++.|.+.... ... .-..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~------l~d--~YEn 334 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDE------LND--VYEN 334 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHH------HHh--hhhc
Confidence 0 0123456888999999999988764 47999999754 577777666532100 000 0001
Q ss_pred CcE---EEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 582 KCF---TTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 582 ~~i---~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
.+| -.+.||.|.+.+++|+-....-+|-+.
T Consensus 335 DaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 335 DAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred cceeeeEEEEecCCcccccccccccceeeeccc
Confidence 112 457899999999999988888777644
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.82 E-value=2.4e-05 Score=76.07 Aligned_cols=264 Identities=13% Similarity=0.138 Sum_probs=167.9
Q ss_pred CcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEeecCCC------
Q 038577 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGA----------DDNKVKVWTVSSGFCFVTFTEHTN------ 392 (860)
Q Consensus 329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~------ 392 (860)
+.+.++|..+++.+..+..-. .-.+..+|+++.+++++ ..-.|.+||..+-....++.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 578899999998877765422 34477899999888753 234699999999887776543322
Q ss_pred -ceEEEEEeeCCCEEEEEe--CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECC-CCc
Q 038577 393 -AVTALHFMANNHSLLSAS--LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMK-TGR 468 (860)
Q Consensus 393 -~v~~i~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~-~~~ 468 (860)
....+.++.|+++++... -.-.|.+.|+...+...++..+.. ..+-.++. +-+..-|.|| .+..+.+. .|+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iyP~~~-~~F~~lC~DG-sl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC---WLIYPSGN-RGFSMLCGDG-SLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE---EEEEEEET-TEEEEEETTS-CEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE---EEEEecCC-CceEEEecCC-ceEEEEECCCCC
Confidence 122356778888777553 445788999999998888887753 22222232 3455666677 67777776 455
Q ss_pred eEEEe----cCcccC-eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE--Ec--c--------cCCCeEEEEEeeCC
Q 038577 469 LLDIL----SGHEGP-VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE--SF--P--------HTHDVLTVVYRPDG 531 (860)
Q Consensus 469 ~~~~~----~~h~~~-v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~--~--------~~~~v~~~~~s~~~ 531 (860)
..... .....+ +..-+++..+..++..+.+|.|+--|+........ +. . ..+.-.-+++++..
T Consensus 170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 54221 111222 22344555566677688999999988876652211 10 0 12233446777766
Q ss_pred CEEEEEeC--------CC--eEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC-EEEEe-
Q 038577 532 RQLACSTL--------DG--QIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS-YILAG- 599 (860)
Q Consensus 532 ~~l~~~~~--------dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~- 599 (860)
+.|++.-. |+ .|-+||+.+++.+..++.... +.++..+.|.+ +|++.
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~---------------------~~Si~Vsqd~~P~L~~~~ 308 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP---------------------IDSIAVSQDDKPLLYALS 308 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE---------------------ESEEEEESSSS-EEEEEE
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc---------------------cceEEEccCCCcEEEEEc
Confidence 65555321 11 488889999999999987654 78999999887 55544
Q ss_pred cCCCeEEEEECCCceEEEEEe
Q 038577 600 GSSKYICMYDVADQVLLRRFQ 620 (860)
Q Consensus 600 ~~dg~v~vwd~~~~~~~~~~~ 620 (860)
..++.+.+||..+|+++++..
T Consensus 309 ~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 309 AGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTTEEEEEETTT--EEEEE-
T ss_pred CCCCeEEEEeCcCCcEEeehh
Confidence 468999999999999998765
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.82 E-value=0.00024 Score=78.96 Aligned_cols=245 Identities=13% Similarity=0.162 Sum_probs=150.5
Q ss_pred ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeC-CeEEEEeC----CCCCc
Q 038577 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTG-KLVQIWRS----PGFKK 126 (860)
Q Consensus 52 ~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~-~~i~iwd~----~~~~~ 126 (860)
...|.++.|..++.-++.+...|.|.+.|.++......-.....|.+++||||++.+|.... +++.+-.- -..+.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 36899999999999999999999999999888765554446889999999999999999844 55544322 11110
Q ss_pred c-----------cceeE-EEEEeecc---------------------CCCeEEEEEcCCCCeEEEe-----ecCCeEEEE
Q 038577 127 E-----------VFAFE-LIRTLADC---------------------NDKVTALNWSPDSNYLLVG-----SKDLAVRLF 168 (860)
Q Consensus 127 ~-----------~~~~~-~~~~~~~h---------------------~~~v~~l~~s~d~~~l~s~-----~~dg~v~vw 168 (860)
. ...|- ....+.|. .+.=+.+.|--||.++|+. ...+.++||
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 00000 00011111 1112458999999999983 223789999
Q ss_pred eecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEc---CCccEEEeeecCCCCCCccccCCCCCCCCCCC
Q 038577 169 YVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIA---RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTP 245 (860)
Q Consensus 169 d~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~---~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~ 245 (860)
|.+.. ....-....+.-.+++|-|.|. .+++.. .|+.|.++.-++-..
T Consensus 228 drEg~-------Lns~se~~~~l~~~LsWkPsgs-----~iA~iq~~~sd~~IvffErNGL~h----------------- 278 (1265)
T KOG1920|consen 228 DREGA-------LNSTSEPVEGLQHSLSWKPSGS-----LIAAIQCKTSDSDIVFFERNGLRH----------------- 278 (1265)
T ss_pred cccch-------hhcccCcccccccceeecCCCC-----eEeeeeecCCCCcEEEEecCCccc-----------------
Confidence 98832 1122222233345689999888 777664 355788887665322
Q ss_pred cceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE---EEcCCeEEEEECCCceeE--EEEeecCceeEEEEEeeCCCE
Q 038577 246 ERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV---GFSNGVFGLYQMPDFVCI--HLLSISREKITTAVFNELGNW 320 (860)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~~g~i~~~~~~~~~~~--~~~~~~~~~i~~~~~s~~~~~ 320 (860)
+.+ ...++.....+..++|+.+++.|++ ......|++|-..+..-- +.+....... +.|+|....
T Consensus 279 ----g~f----~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 279 ----GEF----VLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEK 348 (1265)
T ss_pred ----ccc----ccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCce
Confidence 011 1122333445899999999999998 444556999998765432 3333333222 777774433
Q ss_pred EEEEEccCCcEEEEE
Q 038577 321 LVFGCAKLGQLLVWE 335 (860)
Q Consensus 321 l~~~~~~~g~i~v~d 335 (860)
-+.....+|...+++
T Consensus 349 ~L~v~~~sG~~~v~~ 363 (1265)
T KOG1920|consen 349 TLHVLRESGQRLVRD 363 (1265)
T ss_pred eEEEEecCCcEEEEE
Confidence 222222335555554
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.79 E-value=1e-05 Score=85.12 Aligned_cols=214 Identities=13% Similarity=0.081 Sum_probs=135.8
Q ss_pred cCCCCEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCceEEEEecCc
Q 038577 273 HRGLDMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSESYILKQQGH 348 (860)
Q Consensus 273 ~~~~~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~~~~~~~~~ 348 (860)
.|||+.+. ..-..+.+.+.|..+.+...++.... ....+.++++|+++++++.+ ...+...+..+......+.-.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 34555443 22334677788888877777766655 55788999999999988732 233444433332222221110
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC----C-eeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCcEEEEEccc
Q 038577 349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSS----G-FCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGTVRAWDLFR 422 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~-~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~i~~wd~~~ 422 (860)
. + -++.++|++...+ ++.|.+.|..+ + ..+..+ .-......+.++|||+++++++ .+.++.+.|+.+
T Consensus 280 ~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 280 R--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred H--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 0 0 1345578776653 57899999988 3 344444 4567789999999999887665 588999999987
Q ss_pred cce------------eeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC----------CceEEEecCcccCe
Q 038577 423 YRN------------FRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT----------GRLLDILSGHEGPV 480 (860)
Q Consensus 423 ~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~----------~~~~~~~~~h~~~v 480 (860)
.+. ..+... .......+|+++|....+-.-|+ .|..||+.. ...+..+.-|-.+-
T Consensus 353 ~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~ds-qv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pg 429 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDS-QIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPG 429 (635)
T ss_pred hhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecc-eeEEEehHHHHHHhccccCCcceecccCCCccc
Confidence 653 222222 23446778899998777777777 999999886 33444454443332
Q ss_pred E-----EEEEcCCCCEEEEEeC
Q 038577 481 H-----GLVFSPTNATLASSSW 497 (860)
Q Consensus 481 ~-----~l~~s~~~~~l~s~~~ 497 (860)
. .=.-.|||++|++...
T Consensus 430 h~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 430 HNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred eeeecCCCcCCCCCCEEEEccc
Confidence 2 2223678999988753
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.78 E-value=5.7e-07 Score=83.01 Aligned_cols=274 Identities=16% Similarity=0.190 Sum_probs=170.9
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC------------CcEEEEEEccCCCCCccce
Q 038577 141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR------------DSVVGCFFSVDKKTDKVNR 208 (860)
Q Consensus 141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~------------~~i~~~~~~~~~~~~~~~~ 208 (860)
.+.|+++.|...|.||++|...|.|.++.-... .+....-...+++|. ..|..+.|..++. ...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s-~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~---r~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG---RNH 101 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccc-cccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC---cce
Confidence 456899999999999999999999999987665 221112223455554 3466677755543 226
Q ss_pred EEEEcCCccEEEeeecCCCCCCccccCCCCC---CCCCC--Ccceee----------eEEeeeeccccCCCCceEEEEec
Q 038577 209 IYTIARDCYMFSWGFSGNDGKIDETMEDSEP---PSPGT--PERRVK----------KWGLLRKDDFSQAPSKVTACDYH 273 (860)
Q Consensus 209 l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~ 273 (860)
++..+.|.+|++|.+.....+......-.+. +..+. ....+. ..-...+.....|...+.++.+.
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 7788889999999998764433221111110 00000 000000 00011122335677789999999
Q ss_pred CCCCEEEEEEcCCeEEEEECCCcee---EEEEeecC-----ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEE---
Q 038577 274 RGLDMVVVGFSNGVFGLYQMPDFVC---IHLLSISR-----EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYI--- 342 (860)
Q Consensus 274 ~~~~~l~~~~~~g~i~~~~~~~~~~---~~~~~~~~-----~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~--- 342 (860)
.|.+.++++ .+=.|.+|++.-... +..++.+. .-|++..|+|....++.-++..|.|++-|++.....
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 998877654 456788998753221 22223332 358889999977655555555599999998843211
Q ss_pred ---EE----------ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEeecC------------CCce--
Q 038577 343 ---LK----------QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSS-GFCFVTFTEH------------TNAV-- 394 (860)
Q Consensus 343 ---~~----------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~------------~~~v-- 394 (860)
.. +.+-...|..+.|+++|+++++-+. -+|++||.+. ..++.++.-| ...|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 00 1122346788999999999988766 5899999874 3455555333 2233
Q ss_pred -EEEEEeeCCCEEEEEeCCCcEEEEEc
Q 038577 395 -TALHFMANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 395 -~~i~~~~~~~~l~s~~~dg~i~~wd~ 420 (860)
..+.|+.|.+.+++|+.....-+|-.
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eEEEEecCCcccccccccccceeeecc
Confidence 34678888888999988877777653
No 321
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.76 E-value=1.5e-05 Score=86.29 Aligned_cols=277 Identities=11% Similarity=0.096 Sum_probs=168.9
Q ss_pred CCEEEEEEcCCeEEEEECCCceeEEEEeecCce------eEEEEEeeCC-CEEEEEEccCCcEEEEEccCceEEEEecCc
Q 038577 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK------ITTAVFNELG-NWLVFGCAKLGQLLVWEWRSESYILKQQGH 348 (860)
Q Consensus 276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~------i~~~~~s~~~-~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~ 348 (860)
+..+++++.++.+.-+|..+++.+-........ +..-...-.+ ..++++..+ |.|..+|.++++.+.+....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~-g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD-GRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCC-CeEEEEECCCCCEeeeecCC
Confidence 456778888899999999999888766543320 0000001112 556655544 99999999999998887543
Q ss_pred ccC-----e-EEEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeEEEeecCCC--------------------c
Q 038577 349 YFD-----V-NCLAYSPDSQLLATGA---------DDNKVKVWTVSSGFCFVTFTEHTN--------------------A 393 (860)
Q Consensus 349 ~~~-----v-~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~--------------------~ 393 (860)
... + ....+. +..++.++ .+|.+..+|..+|+.+-.+..... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 1 111222 23455554 367899999999998877654211 0
Q ss_pred e-EEEEEeeCCCEEEEEeCCC------------------cEEEEEccccceeeEeeCCCCCc-----EEEEEE----CCC
Q 038577 394 V-TALHFMANNHSLLSASLDG------------------TVRAWDLFRYRNFRTFTTPSSRQ-----FVSLAS----DQS 445 (860)
Q Consensus 394 v-~~i~~~~~~~~l~s~~~dg------------------~i~~wd~~~~~~~~~~~~~~~~~-----~~~~~~----~~~ 445 (860)
+ ...++.+.+..++.++.++ .+..+|..+++....+....... .....+ .-+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234444556777776665 69999999999888776432110 000011 123
Q ss_pred CC---EEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEE------------------eCCCcEEEE
Q 038577 446 GE---VICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASS------------------SWDKTVRLW 504 (860)
Q Consensus 446 ~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~------------------~~dg~i~iw 504 (860)
|. .+++++.++ .++.+|.++|+.+...... ...++.+| ..+..+ ..+|.+.-.
T Consensus 298 g~~~~~V~~g~~~G-~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 298 GKPVPAIVHAPKNG-FFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCeeEEEEEECCCc-eEEEEECCCCcEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 33 566777777 9999999999988765421 11233343 222221 235778888
Q ss_pred EccCCcceeEEcccC--------CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 505 NVFEGKGSVESFPHT--------HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 505 d~~~~~~~~~~~~~~--------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
|..+++.+....... .+...-.....+..|++++.||.++.+|..+|+.+.+.+...
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCC
Confidence 888887555443220 111111112256789999999999999999999999887543
No 322
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.72 E-value=2.6e-05 Score=84.49 Aligned_cols=276 Identities=12% Similarity=0.124 Sum_probs=168.2
Q ss_pred eEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceE--EEEecCCCCEEEEEEcC
Q 038577 208 RIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVT--ACDYHRGLDMVVVGFSN 285 (860)
Q Consensus 208 ~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~~ 285 (860)
.++.++.++.+...|..+++. .|..............+. .+... ++..+++++.+
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~----------------------~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~ 119 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKV----------------------LWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFD 119 (488)
T ss_pred EEEEeCCCCcEEEEECCCChh----------------------hceeCCCCCccccccccccCCcEEc-cCCeEEEecCC
Confidence 688888899999999888754 565433221000000000 01111 23678889999
Q ss_pred CeEEEEECCCceeEEEEeecCce-----eE-EEEEeeCCCEEEEEEc--------cCCcEEEEEccCceEEEEecCcccC
Q 038577 286 GVFGLYQMPDFVCIHLLSISREK-----IT-TAVFNELGNWLVFGCA--------KLGQLLVWEWRSESYILKQQGHYFD 351 (860)
Q Consensus 286 g~i~~~~~~~~~~~~~~~~~~~~-----i~-~~~~s~~~~~l~~~~~--------~~g~i~v~d~~~~~~~~~~~~~~~~ 351 (860)
|.+.-+|..+++.+-........ +. ...+. +..+++++. .+|.+..+|..+++.+.+.......
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~ 197 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD 197 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC
Confidence 99999999999998776654321 11 11222 234444432 2478999999999988876432110
Q ss_pred --------------------e-EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCeeEEEeecCCC
Q 038577 352 --------------------V-NCLAYSPDSQLLATGADDN------------------KVKVWTVSSGFCFVTFTEHTN 392 (860)
Q Consensus 352 --------------------v-~~~~~s~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~ 392 (860)
+ ...++.+.+..++.++.++ .+.-+|..+|+.+-.+..-..
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~ 277 (488)
T cd00216 198 PNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPH 277 (488)
T ss_pred cCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCC
Confidence 1 1234455566788887665 699999999999887642211
Q ss_pred ceE------EEEEe----eCCC---EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEe------
Q 038577 393 AVT------ALHFM----ANNH---SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGT------ 453 (860)
Q Consensus 393 ~v~------~i~~~----~~~~---~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------ 453 (860)
... ...+. -++. .++.++.+|.+...|..+++.+....... ..++.+| ..++++.
T Consensus 278 ~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~~~~~~~~ 351 (488)
T cd00216 278 DLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLGAFHIPLG 351 (488)
T ss_pred CCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEcccccccc
Confidence 111 11111 1232 57788889999999999999887665321 1223334 3333321
Q ss_pred -----------cCCCeEEEEECCCCceEEEecCcc--------cCe--EEEEEcCCCCEEEEEeCCCcEEEEEccCCcce
Q 038577 454 -----------LDSFEIFVWSMKTGRLLDILSGHE--------GPV--HGLVFSPTNATLASSSWDKTVRLWNVFEGKGS 512 (860)
Q Consensus 454 -----------~~~~~i~v~d~~~~~~~~~~~~h~--------~~v--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 512 (860)
...+.+.-+|+.+|+.+-...... .+. ..+.. .+..++.++.||.++.+|..+++.+
T Consensus 352 ~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~l 429 (488)
T cd00216 352 LPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKEL 429 (488)
T ss_pred CcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCcee
Confidence 112378899999998877664321 111 11222 4678888899999999999999876
Q ss_pred eEEc
Q 038577 513 VESF 516 (860)
Q Consensus 513 ~~~~ 516 (860)
....
T Consensus 430 W~~~ 433 (488)
T cd00216 430 WKFR 433 (488)
T ss_pred eEEE
Confidence 6654
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=7e-08 Score=90.38 Aligned_cols=146 Identities=14% Similarity=0.236 Sum_probs=116.7
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCC----cceeEEcccCCCeEEEEEee-CCC
Q 038577 458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEG----KGSVESFPHTHDVLTVVYRP-DGR 532 (860)
Q Consensus 458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~-~~~ 532 (860)
.+-+-|+.+|... .+. ..+.|.++.|...++++..|...|.|..+|++.. .......-|.+.|+++..-. +++
T Consensus 235 qv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q 312 (425)
T KOG2695|consen 235 QVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQ 312 (425)
T ss_pred eeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccc
Confidence 6888888876533 233 5678899999988999999999999999999876 33455667999999988776 788
Q ss_pred EEEEEeCCCeEEEEeCCCCce---eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 533 QLACSTLDGQIHFWDPLNGEL---MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 533 ~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
+|++.+.+|+|++||++--++ +.+..+|.... .-.-+-..+....+++++.|...+||.
T Consensus 313 ~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~------------------a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 313 KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS------------------AYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred eEeeccCcCceeEeeehhhhcccceeeeecccccc------------------cccccccccccceEEEccCeeEEEEEe
Confidence 999999999999999987666 88888886531 122334556677899999999999999
Q ss_pred CCCceEEEEEeecc
Q 038577 610 VADQVLLRRFQITH 623 (860)
Q Consensus 610 ~~~~~~~~~~~~~~ 623 (860)
+..|.++.+++.+.
T Consensus 375 l~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPY 388 (425)
T ss_pred cccCceeeccCCCC
Confidence 99999998776543
No 324
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.64 E-value=6.5e-05 Score=74.63 Aligned_cols=272 Identities=12% Similarity=0.077 Sum_probs=140.8
Q ss_pred cEEEe-CCCEEEeeeC----CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee
Q 038577 17 NAVLS-QNTKLISPVG----NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR 91 (860)
Q Consensus 17 ~~~~s-dg~~l~~~~~----~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~ 91 (860)
+-+|. ||+.|+++++ ..+.+.|+.+++...+..+-........++|+++.++......+++-.|+.+.+......
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 35688 9988888654 359999999999988875544445567788999998887666789999999987765555
Q ss_pred -cCCceeEEEE--CCCCCEEEEE----eC-------------------CeEEEEeCCCCCcccceeEEEEEeeccCCCeE
Q 038577 92 -FKYPVNAILF--SPNGKYIAVG----TG-------------------KLVQIWRSPGFKKEVFAFELIRTLADCNDKVT 145 (860)
Q Consensus 92 -~~~~v~~~~f--spdg~~la~~----~~-------------------~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~ 145 (860)
....+....| +.|++.++.. .+ ..|.--|+.+++ ...+..-...+.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--------~~~v~~~~~wlg 191 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--------RKVVFEDTDWLG 191 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----------EEEEEEESS-EE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--------eeEEEecCcccc
Confidence 3444444566 4567777655 11 245556777765 344444567788
Q ss_pred EEEEcCCCCeEEEeecCC-----eEEEEeecccccCcccccceEeecC--CCcEEEEEEccCCCCCccceEEEEc-----
Q 038577 146 ALNWSPDSNYLLVGSKDL-----AVRLFYVKEKLKGIHTNKPFLLLGH--RDSVVGCFFSVDKKTDKVNRIYTIA----- 213 (860)
Q Consensus 146 ~l~~s~d~~~l~s~~~dg-----~v~vwd~~~~~~~~~~~~~~~~~~h--~~~i~~~~~~~~~~~~~~~~l~s~~----- 213 (860)
.+.|||....+++-|..| .-|||-+...... ...+..| ...+..=.|.|||. .|.--+
T Consensus 192 H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----~~~v~~~~~~e~~gHEfw~~DG~-----~i~y~~~~~~~ 261 (386)
T PF14583_consen 192 HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----VKKVHRRMEGESVGHEFWVPDGS-----TIWYDSYTPGG 261 (386)
T ss_dssp EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------EESS---TTEEEEEEEE-TTSS------EEEEEEETTT
T ss_pred CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----ceeeecCCCCcccccccccCCCC-----EEEEEeecCCC
Confidence 999999776555544333 2478887765222 1112222 23344456889988 444322
Q ss_pred CCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCC-------
Q 038577 214 RDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNG------- 286 (860)
Q Consensus 214 ~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g------- 286 (860)
.+..|.-.+..++.. .+ +... .....+..+++|++++--+.|.
T Consensus 262 ~~~~i~~~d~~t~~~----------------------~~-------~~~~-p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~ 311 (386)
T PF14583_consen 262 QDFWIAGYDPDTGER----------------------RR-------LMEM-PWCSHFMSSPDGKLFVGDGGDAPVDVADA 311 (386)
T ss_dssp --EEEEEE-TTT--E----------------------EE-------EEEE--SEEEEEE-TTSSEEEEEE----------
T ss_pred CceEEEeeCCCCCCc----------------------eE-------EEeC-CceeeeEEcCCCCEEEecCCCCCcccccc
Confidence 133455555554321 11 0001 1234556678888766433321
Q ss_pred ---------eEEEEECCCceeEEEEee---------cC-ceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577 287 ---------VFGLYQMPDFVCIHLLSI---------SR-EKITTAVFNELGNWLVFGCAKLGQLLVWEW 336 (860)
Q Consensus 287 ---------~i~~~~~~~~~~~~~~~~---------~~-~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~ 336 (860)
-|+++++..+........ +. ..=....|+|||+++++.+...|...||-+
T Consensus 312 ~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 312 GGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ---------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred ccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 456677766554322111 11 123578999999999999988787776643
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.64 E-value=5.7e-05 Score=83.69 Aligned_cols=261 Identities=12% Similarity=0.124 Sum_probs=160.2
Q ss_pred CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEE
Q 038577 141 NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFS 220 (860)
Q Consensus 141 ~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~ 220 (860)
.+.|.++.|..+...++.+..+|.|.+-|.++. .......-...|.+++|+||++ .++..+.++++.+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~-------~~eivg~vd~GI~aaswS~Dee-----~l~liT~~~tll~ 135 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL-------ELEIVGNVDNGISAASWSPDEE-----LLALITGRQTLLF 135 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc-------ceeeeeeccCceEEEeecCCCc-----EEEEEeCCcEEEE
Confidence 367999999999999999999999999987766 3334445678899999999999 8998888888776
Q ss_pred eeecCCCCCCccccCCCCCCCCCCCcceeeeEEe-----------------eeeccccC---CCCceEEEEecCCCCEEE
Q 038577 221 WGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGL-----------------LRKDDFSQ---APSKVTACDYHRGLDMVV 280 (860)
Q Consensus 221 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~---~~~~v~~~~~~~~~~~l~ 280 (860)
-.-.-.... ......+........ -.-|.. .......+ ..+.=+.++|--||++++
T Consensus 136 mT~~f~~i~-E~~L~~d~~~~sk~v---~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fA 211 (1265)
T KOG1920|consen 136 MTKDFEPIA-EKPLDADDERKSKFV---NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFA 211 (1265)
T ss_pred Eeccccchh-ccccccccccccccc---eecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEE
Confidence 543211000 000000000000000 001111 00000001 223345699999999999
Q ss_pred EE-----EcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc--CCcEEEEEccC---ceEEEEecCccc
Q 038577 281 VG-----FSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK--LGQLLVWEWRS---ESYILKQQGHYF 350 (860)
Q Consensus 281 ~~-----~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~--~g~i~v~d~~~---~~~~~~~~~~~~ 350 (860)
+. .....|++||.+ +..-..-....+.-.+++|-|.|..+++.... ++.|.++.-.. +.....++....
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccccc
Confidence 83 333789999986 44433333344556789999999999887643 46788887443 333333344445
Q ss_pred CeEEEEEcCCCCEEEE---EeCCCcEEEEECCCCe--eEEEeecCCCceEEEEEeeCC-CEEEEEeCCCcEEEEEc
Q 038577 351 DVNCLAYSPDSQLLAT---GADDNKVKVWTVSSGF--CFVTFTEHTNAVTALHFMANN-HSLLSASLDGTVRAWDL 420 (860)
Q Consensus 351 ~v~~~~~s~~~~~l~~---~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~i~~~~~~-~~l~s~~~dg~i~~wd~ 420 (860)
++..++|+.++..|++ ......|++|-+.+.. ..+.+....... +.|+|.. ..+..-..+|...++++
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 5899999999999988 4445559999987542 222332222222 7787743 33444446676666664
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1e-05 Score=85.88 Aligned_cols=207 Identities=12% Similarity=0.083 Sum_probs=142.2
Q ss_pred EecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCce-eEEEEEeeCCCEEEEEEccCC----cEEEEEccCc------
Q 038577 271 DYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-ITTAVFNELGNWLVFGCAKLG----QLLVWEWRSE------ 339 (860)
Q Consensus 271 ~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~~g----~i~v~d~~~~------ 339 (860)
++++.+..++.|+.+|.|.+++- ..+.++.++..... +..+....+...|++.+.+.+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46788899999999999998886 45555667776666 444444444467777766655 7999998642
Q ss_pred eEE--EEec-----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeeEEEeecCCCceEEEEEeeCCCEEEE
Q 038577 340 SYI--LKQQ-----GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS----SGFCFVTFTEHTNAVTALHFMANNHSLLS 408 (860)
Q Consensus 340 ~~~--~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 408 (860)
.+. .... ....++.+++.+.+-+.+|+|-.+|.|..+.-+ .+...........+|+++++..++..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 1121 235678999999999999999999999998532 22222233345679999999988877444
Q ss_pred EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec-CcccCe
Q 038577 409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS-GHEGPV 480 (860)
Q Consensus 409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~-~h~~~v 480 (860)
+..-..|.+|.+....+.......++....|..+++....+++++.. .+++|+....++...+. ||....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e--~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE--FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc--eEEEEcCCCcceeeeecCCCeEEE
Confidence 44455799999974443344345566678888888877745555544 69999988766666665 665443
No 327
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.60 E-value=1.1e-06 Score=93.32 Aligned_cols=183 Identities=14% Similarity=0.183 Sum_probs=137.1
Q ss_pred CCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeE
Q 038577 402 NNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVH 481 (860)
Q Consensus 402 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~ 481 (860)
++..++.|+....+..+|+++.+..+........ +. ..-.+++++.+|...| +|.+-|.++.+.++++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~--imR~Nnr~lf~G~t~G-~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VT--IMRYNNRNLFCGDTRG-TVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eE--EEEecCcEEEeecccc-eEEeecCCcCceeeeeecccccee
Confidence 3457888888888999999998887776665543 33 3345678999999888 999999999999999999999998
Q ss_pred EEEEcCCCCEEEEEeC---------CCcEEEEEccCCcceeEEcccCCCeEEEEEeeC-CCEEEEEeCCCeEEEEeCCCC
Q 038577 482 GLVFSPTNATLASSSW---------DKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPD-GRQLACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 482 ~l~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~ 551 (860)
++.. .|+.|++++. |..|+|||++.-+.+..+.-+-+ ..-+.|.|. ...+++++..|...+-|..+-
T Consensus 222 DfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 222 DFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC-chhhhhcccccceEEEEecccceeecccccc
Confidence 8776 6889999885 56789999988764433332322 355677774 347888889999999984321
Q ss_pred -ce-eEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 552 -EL-MYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 552 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
.+ ......+. .+..+.++++|++|+.|+.|..+|.|.+|.
T Consensus 299 sNP~~~~~~v~p------------------~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNP------------------NGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEcc------------------CCCcceeEEecCCCceEEEecccCcEeeec
Confidence 12 11111111 123489999999999999999999999997
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=2e-07 Score=60.48 Aligned_cols=39 Identities=33% Similarity=0.710 Sum_probs=36.8
Q ss_pred CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 467 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
++++..+.+|.++|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 329
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.56 E-value=0.0025 Score=69.63 Aligned_cols=529 Identities=11% Similarity=0.041 Sum_probs=254.8
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEcc-cCeEEEE-------eecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcc
Q 038577 56 CRIAVSPDGTFLLTVDENQRCHFINLH-CHVVLHR-------VRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKE 127 (860)
Q Consensus 56 ~~va~spdg~~la~~~~d~~i~vwd~~-~~~~~~~-------~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~ 127 (860)
..-...++|.....+..+|.+...-+. +++.+.. +....-..|+..-++|-+++...-|.=++-.+.+....
T Consensus 261 ~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~ 340 (1096)
T KOG1897|consen 261 CYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDV 340 (1096)
T ss_pred EcccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCC
Confidence 344567788888888999988765444 4433322 22334466788888886655553333344444433221
Q ss_pred cceeEEEEEeeccCCCeEEEEEcCC----CCeEEEee---cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccC
Q 038577 128 VFAFELIRTLADCNDKVTALNWSPD----SNYLLVGS---KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVD 200 (860)
Q Consensus 128 ~~~~~~~~~~~~h~~~v~~l~~s~d----~~~l~s~~---~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~ 200 (860)
........++. .-++|..++.-.. +..+++++ .||++|+..-.-+ +.......+.| -..++.+.-..+
T Consensus 341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~---I~e~A~i~l~G-ikg~w~lk~~v~ 415 (1096)
T KOG1897|consen 341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIG---IDELASIDLPG-IKGMWSLKSMVD 415 (1096)
T ss_pred Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccc---cceeeEeecCC-ccceeEeecccc
Confidence 11111112222 2346777666432 24566654 5889999865443 11122334444 344555552222
Q ss_pred CCCCccceEEEEcCCccEEEeeecCCCCCCc-cccCCCCC-------CCCC---CCcceeeeEEee-eeccccCCCCceE
Q 038577 201 KKTDKVNRIYTIARDCYMFSWGFSGNDGKID-ETMEDSEP-------PSPG---TPERRVKKWGLL-RKDDFSQAPSKVT 268 (860)
Q Consensus 201 ~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~-~~~~~~~~-------~~~~---~~~~~~~~~~~~-~~~~~~~~~~~v~ 268 (860)
...+. +++.+-. +.-++..+........ .....+.. ..+. .....++...-. ....+ ..+..++
T Consensus 416 ~~~d~--ylvlsf~-~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W-~~p~~~t 491 (1096)
T KOG1897|consen 416 ENYDN--YLVLSFI-SETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEW-RPPGKIT 491 (1096)
T ss_pred ccCCc--EEEEEec-cceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcc-cCCCceE
Confidence 21111 3332221 2223333322110000 00000000 0000 000011111111 01111 1233455
Q ss_pred EEEecCCCCEEEEEEcCCeEEEEECCCceeEEE-EeecCceeEEEEEeeCC--C----EEEEEEccCCcEEEEEccCceE
Q 038577 269 ACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHL-LSISREKITTAVFNELG--N----WLVFGCAKLGQLLVWEWRSESY 341 (860)
Q Consensus 269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~-~~~~~~~i~~~~~s~~~--~----~l~~~~~~~g~i~v~d~~~~~~ 341 (860)
....+.+...+++++.++.+...++..+..... -..-...+.|+.++|-| + .++++..++-.+.+.-..+...
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~ 571 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL 571 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence 555555666777777778777777766552221 12234578899998753 2 4555555533444444444433
Q ss_pred EEEe-c---CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEe--ecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577 342 ILKQ-Q---GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVS--SGFCFVTF--TEHTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 342 ~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
+... . .-...|.-.++-.|..+|.++..||.+.-|.+. ++..-..- .-...|+.--.|+..++.-+.+..|.
T Consensus 572 ~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdr 651 (1096)
T KOG1897|consen 572 ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDR 651 (1096)
T ss_pred eeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCC
Confidence 3322 1 122334455566678899999999998776554 44322211 12345666666766665555555666
Q ss_pred cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc--eEEEecCcccCeEEEEEcCCCCE
Q 038577 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR--LLDILSGHEGPVHGLVFSPTNAT 491 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~s~~~~~ 491 (860)
-..+|..+..-....+..+....+..+.-+.-...++.+..+ .+.+.-+..-+ .++++.- ......+++.+....
T Consensus 652 P~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~--~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~ 728 (1096)
T KOG1897|consen 652 PTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGG--ALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLT 728 (1096)
T ss_pred CEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCC--ceEEEEecchhhcceeeecC-CCChhheEecccceE
Confidence 666666543333333332222222222222333445554444 46655544322 2233332 334566777664444
Q ss_pred EEEEeC-----------C---CcEEEEEccCCcceeEEc-c---cCCCeEEEEEeeC-CCEEEEEeC----------CCe
Q 038577 492 LASSSW-----------D---KTVRLWNVFEGKGSVESF-P---HTHDVLTVVYRPD-GRQLACSTL----------DGQ 542 (860)
Q Consensus 492 l~s~~~-----------d---g~i~iwd~~~~~~~~~~~-~---~~~~v~~~~~s~~-~~~l~~~~~----------dg~ 542 (860)
+++.+. . ..++++|-.+-+...... . ....+.++.|..| +.++++|+. .|.
T Consensus 729 ~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GR 808 (1096)
T KOG1897|consen 729 FGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGR 808 (1096)
T ss_pred EEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccce
Confidence 444332 1 135666655544222111 1 1223555568877 678888752 578
Q ss_pred EEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEE
Q 038577 543 IHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLR 617 (860)
Q Consensus 543 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~ 617 (860)
|.+|....++.+.....+.- .+.+.+++. -+|++||.- ...|++|+..+++.++
T Consensus 809 Iivfe~~e~~~L~~v~e~~v------------------~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr 862 (1096)
T KOG1897|consen 809 IIVFEFEELNSLELVAETVV------------------KGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELR 862 (1096)
T ss_pred EEEEEEecCCceeeeeeeee------------------ccceeehhh-hCCeEEEec--CcEEEEEEccccceeh
Confidence 88888777444444333221 012344332 267777654 4579999999885553
No 330
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.56 E-value=3.2e-06 Score=76.35 Aligned_cols=154 Identities=14% Similarity=0.215 Sum_probs=97.2
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE-EeecCCCceEEEEEeeCCCEEEEEe-----CCCcEEEEEccccceee
Q 038577 354 CLAYSPDSQLLATGADDNKVKVWTVSSGFCFV-TFTEHTNAVTALHFMANNHSLLSAS-----LDGTVRAWDLFRYRNFR 427 (860)
Q Consensus 354 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~i~~~~~~~~l~s~~-----~dg~i~~wd~~~~~~~~ 427 (860)
+-+.+-.++.++++..||.+.+++.+.-..+. .+..-...-.+.++...+..+.+++ .-+..+.|+++..+...
T Consensus 94 ~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 94 NDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred cccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 33344456789999999999999876421111 1111111122333344444444432 12345566654433322
Q ss_pred EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCce-EEEecCcccCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 038577 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRL-LDILSGHEGPVHGLVFSP-TNATLASSSWDKTVRLWN 505 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~-~~~~~~h~~~v~~l~~s~-~~~~l~s~~~dg~i~iwd 505 (860)
.-.... ..+.+++.+|....+++++.+++.+-+||.+.... ...+..|+.+++.+-|+| ++..|.++++||.+..||
T Consensus 174 ~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 174 PSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 222222 23788888887766665555555999999998754 345678999999999999 567899999999999999
Q ss_pred ccC
Q 038577 506 VFE 508 (860)
Q Consensus 506 ~~~ 508 (860)
..+
T Consensus 253 as~ 255 (319)
T KOG4714|consen 253 AST 255 (319)
T ss_pred CCC
Confidence 764
No 331
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=3.7e-07 Score=59.23 Aligned_cols=38 Identities=32% Similarity=0.692 Sum_probs=36.1
Q ss_pred EEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577 132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY 169 (860)
Q Consensus 132 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd 169 (860)
+++..+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 36789999999999999999999999999999999997
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=4.1e-08 Score=103.11 Aligned_cols=277 Identities=16% Similarity=0.228 Sum_probs=190.6
Q ss_pred ccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC-cEEEEEc
Q 038577 258 DDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG-QLLVWEW 336 (860)
Q Consensus 258 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g-~i~v~d~ 336 (860)
..+..+....+|++|+.+.++|++|+..|.|.+|++.+|........|...++.+.-+.||..+++.+.... ...+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 345567788999999999999999999999999999999999999999999999999999999888776533 5678987
Q ss_pred cC-ceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec----CCCceEEEEEeeCCCEEEEEeC
Q 038577 337 RS-ESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE----HTNAVTALHFMANNHSLLSASL 411 (860)
Q Consensus 337 ~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~i~~~~~~~~l~s~~~ 411 (860)
.+ +..... ...-.++.|+.....-+.|.......+||++++..+.++-. ..-.-....|+|+...++ .
T Consensus 1175 ~s~~~~~Hs----f~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---n 1247 (1516)
T KOG1832|consen 1175 SSTGGPRHS----FDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---N 1247 (1516)
T ss_pred ccccCcccc----ccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---e
Confidence 65 222222 23356788887655556666666899999999887766321 122236778999887666 3
Q ss_pred CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCE
Q 038577 412 DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNAT 491 (860)
Q Consensus 412 dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 491 (860)
|| .+||++..+.++.|..-. ....-.|+|.|..+++. -.|||+++.++++....- .-..+.|...|..
T Consensus 1248 dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIIN------SEIwD~RTF~lLh~VP~L--dqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1248 DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIIN------SEIWDMRTFKLLHSVPSL--DQCAVTFNSTGDV 1315 (1516)
T ss_pred Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEee------chhhhhHHHHHHhcCccc--cceEEEeccCccc
Confidence 44 479998887776665433 22344688999888764 358999999888766532 2356777777765
Q ss_pred EEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccc
Q 038577 492 LASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTD 571 (860)
Q Consensus 492 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 571 (860)
+...- .+=|..+. .|...+..--|+ ..+-||..+...+.++++.+.
T Consensus 1316 mYa~~-----~~~d~~sd-------vh~~r~k~p~fS-------------SFRTf~a~dYs~iaTi~v~R~--------- 1361 (1516)
T KOG1832|consen 1316 MYAML-----NIEDVMSD-------VHTRRVKHPLFS-------------SFRTFDAIDYSDIATIPVDRC--------- 1361 (1516)
T ss_pred hhhhh-----hhhhhhhh-------hcccccccchhh-------------hhccccccccccceeeecccc---------
Confidence 54321 11111111 111111111111 256677777788888887764
Q ss_pred cccccccCCCCcEEEEEEecCCCEEEEe
Q 038577 572 RRSAANSSSGKCFTTLCYSADGSYILAG 599 (860)
Q Consensus 572 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 599 (860)
+..+|-+|...+|.+.
T Consensus 1362 ------------~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1362 ------------LLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ------------hhhhhcCCccceEEEE
Confidence 7788888877777654
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=5.7e-06 Score=79.69 Aligned_cols=257 Identities=11% Similarity=0.061 Sum_probs=156.9
Q ss_pred EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCC-CEEEE
Q 038577 288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS-QLLAT 366 (860)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~ 366 (860)
+++.+..+.+..+.+..+...|..++|+|..+-|+...+-+..|.|.|+++...+..+..+ ..+++++|.-|. ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 6666666777777777778889999999999976666666699999999999998888777 679999998765 56778
Q ss_pred EeCCCcEEEEECCCCee-EEEeec--CCCceEEEEEe------eCCCEEEEEeCCCcEEEEEccc--cceeeEeeCCCCC
Q 038577 367 GADDNKVKVWTVSSGFC-FVTFTE--HTNAVTALHFM------ANNHSLLSASLDGTVRAWDLFR--YRNFRTFTTPSSR 435 (860)
Q Consensus 367 ~~~dg~i~iwd~~~~~~-~~~~~~--~~~~v~~i~~~------~~~~~l~s~~~dg~i~~wd~~~--~~~~~~~~~~~~~ 435 (860)
|..+|.|.+||++..+- +..+.+ ...+|..++.- +.+..++....+ +..|++.- ...........+.
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG 331 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPG 331 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCc
Confidence 88899999999985432 222221 23344444432 233344444432 45666532 2222333444445
Q ss_pred cEEEEEECCCCCEEEEEecCCC------eE-EEEECCCCceEEEe-cCccc-C------eEEEEEcCCCCEEE-EEeCCC
Q 038577 436 QFVSLASDQSGEVICAGTLDSF------EI-FVWSMKTGRLLDIL-SGHEG-P------VHGLVFSPTNATLA-SSSWDK 499 (860)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~~------~i-~v~d~~~~~~~~~~-~~h~~-~------v~~l~~s~~~~~l~-s~~~dg 499 (860)
.+.++...+..+.+++....+. .+ ---|-.+|.++..- .++.+ . -..+.-.++.++++ +++..+
T Consensus 332 ~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 332 ICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTN 411 (463)
T ss_pred ceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcc
Confidence 5667777776666666544310 01 11122233333211 11211 0 01122234556655 455568
Q ss_pred cEEEEEccCCcceeEEcccCCCeEEEEEee-C-CCEEEEEeCCCeEEEEeCC
Q 038577 500 TVRLWNVFEGKGSVESFPHTHDVLTVVYRP-D-GRQLACSTLDGQIHFWDPL 549 (860)
Q Consensus 500 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~iwd~~ 549 (860)
.+.+||..+.+ +....+...+|.+++... + +.+|++-+ |..++||..+
T Consensus 412 ~lil~D~~s~e-vvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 412 ELILQDPHSFE-VVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred eeEEeccchhh-eeeecccCcceeecceeecCCcchhhhee-cceEEEEecC
Confidence 89999999987 555555668888877654 3 34666655 5578888654
No 334
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.52 E-value=6.1e-06 Score=87.90 Aligned_cols=180 Identities=17% Similarity=0.209 Sum_probs=131.4
Q ss_pred CCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEE
Q 038577 318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTAL 397 (860)
Q Consensus 318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i 397 (860)
+..++.++-. ..+..+|+.+.+......-..+.|.-+.. +++.+.+|...|+|.+-|.++.+.+.++..|.+.|.++
T Consensus 147 ~~~~i~Gg~Q-~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQ-EKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred Ccceeecchh-hheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3444444444 56777888887777665544444555554 67899999999999999999999999999999999887
Q ss_pred EEeeCCCEEEEEeC---------CCcEEEEEccccceeeEeeCCCCCcEEEEEECCCC-CEEEEEecCCCeEEEEECCC-
Q 038577 398 HFMANNHSLLSASL---------DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSG-EVICAGTLDSFEIFVWSMKT- 466 (860)
Q Consensus 398 ~~~~~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~i~v~d~~~- 466 (860)
.. .|+.|+++|. |..|++||++..+.+..+..+.... -+.|.|.- ..+++.+..| ...+.|..+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~--flrf~Psl~t~~~V~S~sG-q~q~vd~~~l 298 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ--FLRFHPSLTTRLAVTSQSG-QFQFVDTATL 298 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch--hhhhcccccceEEEEeccc-ceeecccccc
Confidence 76 5778998885 5568999999988877776665443 34444542 3455555555 788888432
Q ss_pred --C-ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 467 --G-RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 467 --~-~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
. .-+..+......+..+.+|++++.+|.+..+|.|.+|.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 11233333445599999999999999999999999998
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=8.4e-06 Score=78.55 Aligned_cols=265 Identities=14% Similarity=0.100 Sum_probs=152.4
Q ss_pred EEEEECCCCcEEeeccCCccCeeEEEEcCCCC-EEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEE-E
Q 038577 34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGT-FLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAV-G 111 (860)
Q Consensus 34 i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~-~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~-~ 111 (860)
+.+.+..+-+...++.+|...|..++|||..+ ++..++.++.|.|.|+++...+..+....++.+++|.-|...... |
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 66666666555556678999999999999888 778889999999999999999998887799999999987755544 4
Q ss_pred -eCCeEEEEeCCCCCcccceeEEEEEeec--cCCCeEEEE------EcCCCCeEEEeecCCeEEEEeecccccCcccccc
Q 038577 112 -TGKLVQIWRSPGFKKEVFAFELIRTLAD--CNDKVTALN------WSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKP 182 (860)
Q Consensus 112 -~~~~i~iwd~~~~~~~~~~~~~~~~~~~--h~~~v~~l~------~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~ 182 (860)
..|.|.|||+...+... ..+.+ -..+|..++ .++.|.+|+....+ ...|++...... .+
T Consensus 255 l~nG~VlvyD~R~~~~~~------~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~----~p 322 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPL------MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAEC----LP 322 (463)
T ss_pred ccCceEEEEEccCCCchH------hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccC----CC
Confidence 77999999998765422 11111 122333333 33445555555543 667877655222 22
Q ss_pred e-EeecCCCcEEEEEEccCCCCCccceEEEEcCCcc---EEEe--eecCCCCCCccccCCCCCCCCCCCcceeeeEEeee
Q 038577 183 F-LLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCY---MFSW--GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR 256 (860)
Q Consensus 183 ~-~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~---i~~w--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (860)
. ...+..+...++.+.+..+. .|++.-.+.. ++.- ..+... ....|....
T Consensus 323 ~vlele~pG~cismqy~~~snh----~l~tyRs~pn~p~~r~il~~~d~~d--------------------G~pVc~~r~ 378 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNH----LLLTYRSNPNFPQSRFILGRIDFRD--------------------GFPVCGKRR 378 (463)
T ss_pred cccccCCCcceeeeeecCccce----EEEEecCCCCCccceeeeeeecccc--------------------Cceeeeecc
Confidence 2 22233555566666654441 3333322210 0000 000000 001121111
Q ss_pred eccccCCC---CceEEEEecCCCCEEE-EEEcCCeEEEEECCCceeEEEEeecCceeEEEEEee-CCCEEEEEEccCCcE
Q 038577 257 KDDFSQAP---SKVTACDYHRGLDMVV-VGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE-LGNWLVFGCAKLGQL 331 (860)
Q Consensus 257 ~~~~~~~~---~~v~~~~~~~~~~~l~-~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~~~g~i 331 (860)
.. +.... ..-..+.-.++.++++ +|...+.+.+||..+++..+.+... .++..++... +|..++..-.+ ..+
T Consensus 379 ~~-~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd-~~v 455 (463)
T KOG1645|consen 379 TY-FGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTD-DRV 455 (463)
T ss_pred cc-cCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhheec-ceE
Confidence 11 00000 0011122234445544 5556689999999999999988877 5777776654 33333333333 567
Q ss_pred EEEEcc
Q 038577 332 LVWEWR 337 (860)
Q Consensus 332 ~v~d~~ 337 (860)
.||..+
T Consensus 456 ~Iyk~e 461 (463)
T KOG1645|consen 456 HIYKNE 461 (463)
T ss_pred EEEecC
Confidence 776544
No 336
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.49 E-value=4.6e-05 Score=79.41 Aligned_cols=136 Identities=17% Similarity=0.193 Sum_probs=94.6
Q ss_pred CCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee-cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE-
Q 038577 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI-SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY- 341 (860)
Q Consensus 264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~- 341 (860)
...+.--+++..+++++.|+..|.+++|+-..+.....-.. ..+.+.....+++...+++++.. |.|.++-+..+..
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~-g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTAS-GRVSVFQLNKELPR 111 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCC-ceEEeehhhccCCC
Confidence 34455556677889999999999999999876665443332 33445556666666666666554 9999987765321
Q ss_pred ----EEEe-cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEeecCCCceEEEEEe
Q 038577 342 ----ILKQ-QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG----FCFVTFTEHTNAVTALHFM 400 (860)
Q Consensus 342 ----~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~i~~~ 400 (860)
+... ..|...|+|++|++++..+.+|...|+|..-.+.+. ...+.+..-.+.|..+.+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 1111 347788999999999999999999999999888762 1222333445667777665
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=1.1e-05 Score=85.17 Aligned_cols=267 Identities=13% Similarity=0.091 Sum_probs=155.3
Q ss_pred CceEEEEecCCCCEEEEEEcC----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCce
Q 038577 265 SKVTACDYHRGLDMVVVGFSN----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSES 340 (860)
Q Consensus 265 ~~v~~~~~~~~~~~l~~~~~~----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~ 340 (860)
..-+-..|+|...++++++.. |.|.||-- +|++...... .-.+++++|+|..-.|+.+-.. |.+.+|...+.+
T Consensus 16 avsti~SWHPsePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~-g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 16 AVSTISSWHPSEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEM-GVSDVQKTNTTE 92 (1416)
T ss_pred ccccccccCCCCceeEEEEecCCCCceEEEEec-CCCCCccccc-ceehhhhccChHHHHHhhcccc-ceeEEEecCCce
Confidence 344556789999999887754 88888854 4443322211 1245779999987777766555 999999998888
Q ss_pred EEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE--eecC--CCceE--EEEEeeCCC------EEEE
Q 038577 341 YILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT--FTEH--TNAVT--ALHFMANNH------SLLS 408 (860)
Q Consensus 341 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~--~~~v~--~i~~~~~~~------~l~s 408 (860)
.......|..+|..+.||++|..++++..-|.+.+|....-..++. +..| ...++ +...++++. ..++
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence 7777788999999999999999999999999999998763222221 1122 12233 334455532 2234
Q ss_pred EeCCCcEE-EEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcC
Q 038577 409 ASLDGTVR-AWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSP 487 (860)
Q Consensus 409 ~~~dg~i~-~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~ 487 (860)
.+.+..+- .++.+.....+. ..-.-.|+|..+++++.+| +|+-.|- .|+.....+..+. ..+-|.+
T Consensus 173 tgDe~alD~~fnwk~~~a~rs---------~~ksgv~~g~~F~~~~~~G-tVyyvdq-~g~~~~V~k~dS~--vQmLf~~ 239 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERS---------DEKSGVPKGTEFLFAGKSG-TVYYVDQ-NGRQRTVHKLDSE--VQMLFMG 239 (1416)
T ss_pred cCchhhhcccccCccchhhcc---------ccccCCCCCcEEEEEcCCc-eEEEEcC-CCcEEEEEEccch--HHHHHhc
Confidence 44444332 222211111111 1112247788888888887 8887774 3444433321111 1122222
Q ss_pred CCCEEEEEeCCCcEEEEEcc-C---------------Cc------------ce----eEEcccCCCeEEEEEeeCCCEEE
Q 038577 488 TNATLASSSWDKTVRLWNVF-E---------------GK------------GS----VESFPHTHDVLTVVYRPDGRQLA 535 (860)
Q Consensus 488 ~~~~l~s~~~dg~i~iwd~~-~---------------~~------------~~----~~~~~~~~~v~~~~~s~~~~~l~ 535 (860)
-..-++..-.+-++.++-+. + |. .+ .--......+++++++.-+..|+
T Consensus 240 ~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~ 319 (1416)
T KOG3617|consen 240 YCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLW 319 (1416)
T ss_pred ccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEE
Confidence 21112211111111111110 0 00 00 00112456799999999999999
Q ss_pred EEeCCCeEEEEe
Q 038577 536 CSTLDGQIHFWD 547 (860)
Q Consensus 536 ~~~~dg~i~iwd 547 (860)
.|...|.+.+|-
T Consensus 320 agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 320 AGTKEGNVTIWL 331 (1416)
T ss_pred ecccCCcEEEee
Confidence 999999999995
No 338
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.48 E-value=0.00073 Score=67.37 Aligned_cols=272 Identities=13% Similarity=0.068 Sum_probs=139.2
Q ss_pred EecCCCCEEEEEEc---CCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC
Q 038577 271 DYHRGLDMVVVGFS---NGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG 347 (860)
Q Consensus 271 ~~~~~~~~l~~~~~---~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~ 347 (860)
+|.++|+.|+.++. ..++.+.|+.+++..+.............++++++.++..... ..|...|+++.+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEEC
Confidence 57889988776655 4678888998888877666554445567788998888876544 6889999999876555544
Q ss_pred cccCeEEEEE--cCCCCEEEEEeC----------------------CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCC
Q 038577 348 HYFDVNCLAY--SPDSQLLATGAD----------------------DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANN 403 (860)
Q Consensus 348 ~~~~v~~~~~--s~~~~~l~~~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~ 403 (860)
...-+-...| +.++..++-.-. ...|.-.|+.+|+....+. ....+..+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 4444443444 445665543211 1235555777776555443 45667788899976
Q ss_pred CEEEEEeCCC-----cEEEEEccc-cceeeEeeC-CCCCcEEEEEECCCCCEEEEEec-CCC---eEEEEECCCCceEEE
Q 038577 404 HSLLSASLDG-----TVRAWDLFR-YRNFRTFTT-PSSRQFVSLASDQSGEVICAGTL-DSF---EIFVWSMKTGRLLDI 472 (860)
Q Consensus 404 ~~l~s~~~dg-----~i~~wd~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~---~i~v~d~~~~~~~~~ 472 (860)
..+++-+..| .-++|-+++ +...+.+.. .....+..=-|.|||..+..-+. .++ .|.-+|+.+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 6666554433 136676654 222232222 22334455668999998776433 222 577778888766443
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeCCC----------------cEEEEEccCCcceeEEcccC---------C--CeEEE
Q 038577 473 LSGHEGPVHGLVFSPTNATLASSSWDK----------------TVRLWNVFEGKGSVESFPHT---------H--DVLTV 525 (860)
Q Consensus 473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg----------------~i~iwd~~~~~~~~~~~~~~---------~--~v~~~ 525 (860)
.. ..+-..+..++||++++-=+.|. -|+++++..+... .+..|. . .-...
T Consensus 280 ~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp 356 (386)
T PF14583_consen 280 ME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHP 356 (386)
T ss_dssp EE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-------BTTBSSTT----
T ss_pred Ee--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCC
Confidence 22 23455677788999887544432 4566777665422 121121 1 23567
Q ss_pred EEeeCCCEEEE-EeCCCeEEEEe
Q 038577 526 VYRPDGRQLAC-STLDGQIHFWD 547 (860)
Q Consensus 526 ~~s~~~~~l~~-~~~dg~i~iwd 547 (860)
.|+|||++++- +...|...||-
T Consensus 357 ~FSPDgk~VlF~Sd~~G~~~vY~ 379 (386)
T PF14583_consen 357 SFSPDGKWVLFRSDMEGPPAVYL 379 (386)
T ss_dssp EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred ccCCCCCEEEEECCCCCCccEEE
Confidence 99999997655 45567666653
No 339
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=7.8e-07 Score=83.58 Aligned_cols=146 Identities=10% Similarity=0.151 Sum_probs=114.4
Q ss_pred CCCEEEeeeCCeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccC-----eEEEEeecCCce
Q 038577 22 QNTKLISPVGNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCH-----VVLHRVRFKYPV 96 (860)
Q Consensus 22 dg~~l~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~-----~~~~~~~~~~~v 96 (860)
-|-++++|.+..|-+-|++||.++.+. ..+.|.++.|...+.++..|..+|.|..+|+..+ .+.+.+-|+..|
T Consensus 224 ~gyhfs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 224 MGYHFSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred ceeeecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 444555566678999999999988776 7788999999999999999999999999999854 667777899999
Q ss_pred eEEEECC-CCCE-EEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEE--EcCCCCeEEEeecCCeEEEEeecc
Q 038577 97 NAILFSP-NGKY-IAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALN--WSPDSNYLLVGSKDLAVRLFYVKE 172 (860)
Q Consensus 97 ~~~~fsp-dg~~-la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~d~~~l~s~~~dg~v~vwd~~~ 172 (860)
+++..-. ++++ +|+.-+|.|.+||..--+... -+..+.||...-.-+- ..+....+++++.|...|||.++.
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~----~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKK----SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhccc----ceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 9988765 4554 455589999999987554211 2678888855433332 345667889999999999999998
Q ss_pred c
Q 038577 173 K 173 (860)
Q Consensus 173 ~ 173 (860)
+
T Consensus 378 g 378 (425)
T KOG2695|consen 378 G 378 (425)
T ss_pred C
Confidence 7
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=0.00092 Score=69.07 Aligned_cols=75 Identities=17% Similarity=0.303 Sum_probs=64.0
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY 423 (860)
Q Consensus 347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~ 423 (860)
.....+.|++++|+...++.|+.||.|.+||...+... +....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 46678999999999999999999999999998766433 3345567889999999999999999999999998543
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.0011 Score=69.14 Aligned_cols=271 Identities=14% Similarity=0.113 Sum_probs=179.6
Q ss_pred EEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE-EE
Q 038577 288 FGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL-AT 366 (860)
Q Consensus 288 i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~ 366 (860)
+.+++..+......+.... ....+...+++..+.+.......+...+...................++.++.+..+ ++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 3444443333333333332 556777888886666665443445555544222222111111334577888888844 44
Q ss_pred EeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC---CCcEEEEEccccceeeEeeCCCCCcEEEEEEC
Q 038577 367 GADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL---DGTVRAWDLFRYRNFRTFTTPSSRQFVSLASD 443 (860)
Q Consensus 367 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 443 (860)
...++.|.+.|..+........... ....++++++++.+..+.. ++.+.+.|-.+.+.......... + ..++++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-P-~~~a~~ 168 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT-P-TGVAVD 168 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC-c-ceEEEC
Confidence 4456899999988777766654333 6778999999987776665 68899999888888887554432 2 899999
Q ss_pred CCCCEEEEEecCCCeEEEEECCCCceEE-E---ecCcccCeEEEEEcCCCCEEEEEeCC---CcEEEEEccCCcceeEEc
Q 038577 444 QSGEVICAGTLDSFEIFVWSMKTGRLLD-I---LSGHEGPVHGLVFSPTNATLASSSWD---KTVRLWNVFEGKGSVESF 516 (860)
Q Consensus 444 ~~~~~l~~~~~~~~~i~v~d~~~~~~~~-~---~~~h~~~v~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~ 516 (860)
|+|..+++...+.+.+.++|.+...... . ...-......+.++|+|..+...... +.+...|..++.......
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 9999888888666699999977665553 1 11122344678999999976655443 589999988876444322
Q ss_pred ccCC-CeEEEEEeeCCCEEEEEeCC-CeEEEEeCCCCceeEEEecccc
Q 038577 517 PHTH-DVLTVVYRPDGRQLACSTLD-GQIHFWDPLNGELMYTIEGRRD 562 (860)
Q Consensus 517 ~~~~-~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~ 562 (860)
.... ....+..+|+|..+.+.... +.+.+-|..+.+....+.....
T Consensus 249 ~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 249 PVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred ccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 2222 56788999999999888544 8899999998888777665543
No 342
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.42 E-value=0.00069 Score=73.60 Aligned_cols=280 Identities=14% Similarity=0.173 Sum_probs=167.7
Q ss_pred CCEEEEEEccCCcEEEEEccCceEEEEecCcc-cCeE----------EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 038577 318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-FDVN----------CLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT 386 (860)
Q Consensus 318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-~~v~----------~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 386 (860)
+..+++++.. +.|.-.|..+++.+.+..... ..+. .+++ .+..++.++.|+.+.-+|..+|+.+-.
T Consensus 69 ~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3444444443 788888999998887764311 1111 1122 234677788899999999999998876
Q ss_pred eecC--C--CceEEEEEeeCCCEEEEEe------CCCcEEEEEccccceeeEeeCCCCC---------------------
Q 038577 387 FTEH--T--NAVTALHFMANNHSLLSAS------LDGTVRAWDLFRYRNFRTFTTPSSR--------------------- 435 (860)
Q Consensus 387 ~~~~--~--~~v~~i~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~~~--------------------- 435 (860)
.... . ..+.+.-..-++ .++.+. .+|.|..+|..+++.+..+......
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 5421 1 112111111134 444443 2689999999999877665432111
Q ss_pred ----------cEEEEEECCCCCEEEEEecC-----C----------CeEEEEECCCCceEEEecCcccCeEE--------
Q 038577 436 ----------QFVSLASDQSGEVICAGTLD-----S----------FEIFVWSMKTGRLLDILSGHEGPVHG-------- 482 (860)
Q Consensus 436 ----------~~~~~~~~~~~~~l~~~~~~-----~----------~~i~v~d~~~~~~~~~~~~h~~~v~~-------- 482 (860)
.-..+++++...+++++..+ + ..|.-.|+++|+..-.++.....+.+
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 11245788888888877643 1 16778899999988776542222211
Q ss_pred -EEEcCCCC---EEEEEeCCCcEEEEEccCCcceeE--------Ec---c-cC-CCe-----------------------
Q 038577 483 -LVFSPTNA---TLASSSWDKTVRLWNVFEGKGSVE--------SF---P-HT-HDV----------------------- 522 (860)
Q Consensus 483 -l~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~--------~~---~-~~-~~v----------------------- 522 (860)
+.+..+|+ .++.+..+|.+++.|-.+++.+.. .. . .. .++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 22224665 688999999999999999875421 00 0 00 000
Q ss_pred -----EEEEEeeCCCEEEEEeCC---------------------------------CeEEEEeCCCCceeEEEecccccC
Q 038577 523 -----LTVVYRPDGRQLACSTLD---------------------------------GQIHFWDPLNGELMYTIEGRRDIS 564 (860)
Q Consensus 523 -----~~~~~s~~~~~l~~~~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~~ 564 (860)
..++++|+..++++...+ |.|.-+|+.+|+.+...+.....
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~- 463 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL- 463 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC-
Confidence 125667766666555443 34555666666655554432110
Q ss_pred CCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577 565 GGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT 622 (860)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 622 (860)
..+. ..-.|..++.++.+|.++.+|.++|+.+-+++..
T Consensus 464 -------------------~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 464 -------------------WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred -------------------CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 0111 1224557777888999999999999999888764
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.41 E-value=0.0016 Score=70.72 Aligned_cols=281 Identities=12% Similarity=0.154 Sum_probs=165.7
Q ss_pred CCEEEEEEcCCeEEEEECCCceeEEEEeecCc-eeEE----------EEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISRE-KITT----------AVFNELGNWLVFGCAKLGQLLVWEWRSESYILK 344 (860)
Q Consensus 276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~-~i~~----------~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~ 344 (860)
+..+++++.++.|.-+|..+++.+-....... .+.. +++ .+..+++++.+ +.+.-.|.++++.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~d-g~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLD-ARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCC-CEEEEEECCCCCEEee
Confidence 55788888889999999999998877654321 1111 111 23455555444 8999999999999877
Q ss_pred ecCcccC-eEEEEEcC---CCCEEEEEeC------CCcEEEEECCCCeeEEEeecCC-----------------------
Q 038577 345 QQGHYFD-VNCLAYSP---DSQLLATGAD------DNKVKVWTVSSGFCFVTFTEHT----------------------- 391 (860)
Q Consensus 345 ~~~~~~~-v~~~~~s~---~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~----------------------- 391 (860)
....... -..+.-+| ++ .++++.. +|.|..+|.++|+.+-.+..-.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 6421100 00111112 34 4555432 6889999999998876543211
Q ss_pred --------CceE-EEEEeeCCCEEEEEeCC-----C-----------cEEEEEccccceeeEeeCCCC--------CcEE
Q 038577 392 --------NAVT-ALHFMANNHSLLSASLD-----G-----------TVRAWDLFRYRNFRTFTTPSS--------RQFV 438 (860)
Q Consensus 392 --------~~v~-~i~~~~~~~~l~s~~~d-----g-----------~i~~wd~~~~~~~~~~~~~~~--------~~~~ 438 (860)
..++ .+++.+....++.+..+ + .|...|+++++....++..+. ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 1111 23555555555544421 2 577788889988877765322 1222
Q ss_pred EEEECCCCC---EEEEEecCCCeEEEEECCCCceEEEec--C----------cc-cCe----------------------
Q 038577 439 SLASDQSGE---VICAGTLDSFEIFVWSMKTGRLLDILS--G----------HE-GPV---------------------- 480 (860)
Q Consensus 439 ~~~~~~~~~---~l~~~~~~~~~i~v~d~~~~~~~~~~~--~----------h~-~~v---------------------- 480 (860)
-+.+..+|+ .++.+..++ .+++.|..+|+++...+ . .. .++
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G-~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~ 383 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNG-FFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGF 383 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCc-eEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCC
Confidence 333445676 666777777 99999999998862110 0 00 000
Q ss_pred ------EEEEEcCCCCEEEEEeCC---------------------------------CcEEEEEccCCcceeEEcccCCC
Q 038577 481 ------HGLVFSPTNATLASSSWD---------------------------------KTVRLWNVFEGKGSVESFPHTHD 521 (860)
Q Consensus 481 ------~~l~~s~~~~~l~s~~~d---------------------------------g~i~iwd~~~~~~~~~~~~~~~~ 521 (860)
..++++|+..++.....+ |.+.-+|+.+++...........
T Consensus 384 ~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~ 463 (527)
T TIGR03075 384 LGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPL 463 (527)
T ss_pred cCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCC
Confidence 124566655554433222 44677777777654443321111
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccc
Q 038577 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRD 562 (860)
Q Consensus 522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 562 (860)
..+. +.-.+.+++.++.+|.++.+|.++|+.+...+....
T Consensus 464 ~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~ 503 (527)
T TIGR03075 464 WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSG 503 (527)
T ss_pred CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCCCC
Confidence 1111 222556778888899999999999999998876543
No 344
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.0011 Score=69.20 Aligned_cols=268 Identities=13% Similarity=0.093 Sum_probs=179.6
Q ss_pred EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCC-EEEE
Q 038577 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD-DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNH-SLLS 408 (860)
Q Consensus 331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~-~l~s 408 (860)
+.+++..+......+..+. ....+.+.+++..+..... ...+...+...................+++++.+. ..++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 4445544444444433222 4566788888865554443 22455555442222221211113456778888887 4455
Q ss_pred EeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecC--CCeEEEEECCCCceEEEecCcccCeEEEEEc
Q 038577 409 ASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLD--SFEIFVWSMKTGRLLDILSGHEGPVHGLVFS 486 (860)
Q Consensus 409 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s 486 (860)
...++.+.+.|..+.+......... ....++++++++.+.++... .+.+.+.|..+++.......-..+ ..++++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~ 168 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD 168 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC
Confidence 5556899999988877777666554 56789999999999888773 459999999999988886543445 899999
Q ss_pred CCCCEEEEEe-CCCcEEEEEccCCcceeE----EcccCCCeEEEEEeeCCCEEEEEeCC---CeEEEEeCCCCceeEEEe
Q 038577 487 PTNATLASSS-WDKTVRLWNVFEGKGSVE----SFPHTHDVLTVVYRPDGRQLACSTLD---GQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 487 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 558 (860)
|+|..+..+. .++.|.+.|......... ..........+.++|+|.++.+.... +.+...|..++.......
T Consensus 169 p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 169 PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 9999766555 788999999766643311 12333445778999999977776554 589999998887766522
Q ss_pred cccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC-CCeEEEEECCCceEEEEEee
Q 038577 559 GRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS-SKYICMYDVADQVLLRRFQI 621 (860)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~v~vwd~~~~~~~~~~~~ 621 (860)
.... . ....+.++|+|+++.+... .+.+.+-|..+......+..
T Consensus 249 ~~~~------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 249 PVGS------------------G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred cccc------------------C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 1111 0 1467899999999988854 48899999999888776544
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.39 E-value=0.00098 Score=68.89 Aligned_cols=139 Identities=15% Similarity=0.061 Sum_probs=95.8
Q ss_pred cEEEEEcccC--eEEEEeecCCceeEEEECC-CCCEEEEE-----eCC----eEEEEeCCCCCcccceeEEEEEeeccCC
Q 038577 75 RCHFINLHCH--VVLHRVRFKYPVNAILFSP-NGKYIAVG-----TGK----LVQIWRSPGFKKEVFAFELIRTLADCND 142 (860)
Q Consensus 75 ~i~vwd~~~~--~~~~~~~~~~~v~~~~fsp-dg~~la~~-----~~~----~i~iwd~~~~~~~~~~~~~~~~~~~h~~ 142 (860)
++.++.+..+ +.+..++.+....++.||- +...+-+. .++ .-.+|+....+.. ....+--....
T Consensus 185 Nl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq----rvsvtsipL~s 260 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ----RVSVTSIPLPS 260 (545)
T ss_pred cEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee----EEEEEEEecCC
Confidence 3444444433 3344444566678889987 33444443 233 3456777654321 11122225678
Q ss_pred CeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEee
Q 038577 143 KVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWG 222 (860)
Q Consensus 143 ~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~ 222 (860)
.|.+.+++|+...|+.|+.||+|.+||...+ ...+....-.++.++|+|+|. .+++++..|.+.+||
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~ga-----i~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPDGA-----IFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCCCc-----EEEEEcCCceEEEEE
Confidence 8999999999999999999999999998776 333444556678899999999 999999999999999
Q ss_pred ecCCCCCC
Q 038577 223 FSGNDGKI 230 (860)
Q Consensus 223 ~~~~~~~~ 230 (860)
+.-.....
T Consensus 328 ~ALspi~~ 335 (545)
T PF11768_consen 328 MALSPIKM 335 (545)
T ss_pred eecCccce
Confidence 98765433
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.38 E-value=2.5e-05 Score=81.30 Aligned_cols=162 Identities=20% Similarity=0.189 Sum_probs=110.6
Q ss_pred eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEc---CC-CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEE
Q 038577 33 RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVD---EN-QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYI 108 (860)
Q Consensus 33 ~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~---~d-~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~l 108 (860)
.+.+-|.. +.....+......+..-+|+|+++.++..+ .. ..+.++|+.+++........+.-...+|||||+.|
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l 252 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKL 252 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEE
Confidence 46666665 444444434556678889999999988753 22 46999999999888887778888889999999999
Q ss_pred EEE--eC--CeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeec-CCe--EEEEeecccccCccccc
Q 038577 109 AVG--TG--KLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSK-DLA--VRLFYVKEKLKGIHTNK 181 (860)
Q Consensus 109 a~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~-dg~--v~vwd~~~~~~~~~~~~ 181 (860)
|.. .+ -.|+++|+.++.. ..+..-.+.-+.-.|+|||+.++..+. .|. |.+.+.+.. .
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~--------~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~-------~ 317 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNL--------PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS-------Q 317 (425)
T ss_pred EEEECCCCCccEEEEcCCCCcc--------eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC-------c
Confidence 998 33 4677788877652 334444444457889999998887653 454 444455444 1
Q ss_pred ceEeecCCCcEEEEEEccCCCCCccceEEEEcCC
Q 038577 182 PFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD 215 (860)
Q Consensus 182 ~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d 215 (860)
...+....+.-..-.++|||+ +++..+..
T Consensus 318 ~~riT~~~~~~~~p~~SpdG~-----~i~~~~~~ 346 (425)
T COG0823 318 VTRLTFSGGGNSNPVWSPDGD-----KIVFESSS 346 (425)
T ss_pred eeEeeccCCCCcCccCCCCCC-----EEEEEecc
Confidence 233333322223678899999 78777743
No 347
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.33 E-value=8e-05 Score=77.60 Aligned_cols=205 Identities=16% Similarity=0.113 Sum_probs=128.4
Q ss_pred eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCC---cEEEEEccCceEEEEecCcccCeEEEEEcCCCCE
Q 038577 287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLG---QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQL 363 (860)
Q Consensus 287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g---~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 363 (860)
.+.+-|.. +...+.+......+..-+|+|++..++...-..+ .+.++++.++....... ..+.-...+|+|||+.
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 33444443 4555566666677888899999998877654433 48899998876554442 2222345689999998
Q ss_pred EEEEeC-CCc--EEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEe-CCCc--EEEEEccccceeeEeeCCCCCcE
Q 038577 364 LATGAD-DNK--VKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSAS-LDGT--VRAWDLFRYRNFRTFTTPSSRQF 437 (860)
Q Consensus 364 l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~~~ 437 (860)
++.... ||. |.++|+..+... .+....+.-..-.|+|||+.++-.+ ..|. |.+++...... +.+...... -
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~-~ 328 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGG-N 328 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCC-C
Confidence 876554 554 666677666533 3443334344678999999887554 4454 55556555444 333322222 2
Q ss_pred EEEEECCCCCEEEEEecCCCe--EEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577 438 VSLASDQSGEVICAGTLDSFE--IFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSW 497 (860)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~~~--i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 497 (860)
..-.++|||++++.....++. |.+.|+.++...+.+. +......-.+.|+++.+...+.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 277889999999988754334 7777777766544443 3334445678888887765543
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.33 E-value=0.00067 Score=71.04 Aligned_cols=220 Identities=12% Similarity=0.181 Sum_probs=121.0
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE
Q 038577 349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT 428 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 428 (860)
......+.++|+|++++++ .+|.-.++.....+.... +.-...+|.+.+ .+++-...+.|.++.--+....+.
T Consensus 32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceE
Confidence 3447889999999999884 568888888544443322 233467788855 567676688899974333333334
Q ss_pred eeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC
Q 038577 429 FTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE 508 (860)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 508 (860)
+..+. .+..+.. |..|.+.+.+ .|.+||..+++.++.+... +|..+.|+++|.+++..+.+ .+.+++...
T Consensus 105 i~~~~--~~~~If~---G~LL~~~~~~--~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 105 IKLPF--SVEKIFG---GNLLGVKSSD--FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ---SS---EEEEE----SSSEEEEETT--EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred EcCCc--ccceEEc---CcEEEEECCC--CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 44432 2333333 8888777665 6999999999999998743 48999999999999998855 588877543
Q ss_pred C----------c-ceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCce--eEEEecccccCCCccccccccc
Q 038577 509 G----------K-GSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGEL--MYTIEGRRDISGGRLMTDRRSA 575 (860)
Q Consensus 509 ~----------~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 575 (860)
. + ...........|.+.+|..| .++-.+.. .++.+ ..|+. +..++
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~~i~~ld----------------- 232 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETGIIAHLD----------------- 232 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEEEEEE-S-----------------
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcceEEEcC-----------------
Confidence 3 0 12222223677888889765 33333333 66663 23332 22221
Q ss_pred cccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCc
Q 038577 576 ANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQ 613 (860)
Q Consensus 576 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~ 613 (860)
.++.=+.+.|..+.+.....|+.|..+.++..
T Consensus 233 ------~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 ------KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ------S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred ------CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 13566777777778888888888888777654
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.31 E-value=0.00043 Score=71.47 Aligned_cols=286 Identities=12% Similarity=0.012 Sum_probs=140.6
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCc--cccee
Q 038577 54 NICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKK--EVFAF 131 (860)
Q Consensus 54 ~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~--~~~~~ 131 (860)
.|+++.|+++..-||++...|.|.||.+...+.-. -+...+-....|.+-+ ..++.-.+-|+..... ....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~l~di~~r~~~~~~~gf 76 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRFS-----LNNSPGKLTDISDRAPPSLKEGF 76 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------GGGSS-SEEE-GGG--TT-SEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCccccccc-----ccCCCcceEEehhhCCccccccc
Confidence 58999999998889999999999999887654332 0001111222222100 0111122233322110 11234
Q ss_pred EEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceE---eecCCCcEEEEEEcc---CCCCCc
Q 038577 132 ELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFL---LLGHRDSVVGCFFSV---DKKTDK 205 (860)
Q Consensus 132 ~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~---~~~h~~~i~~~~~~~---~~~~~~ 205 (860)
.+...+....++|++++.| |=.++|.|..+|.+.|.|++.. .-+....... -......++++.|+. .+....
T Consensus 77 ~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP-avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP-AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT-EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred CchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC-eEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 4556666678999999998 5568999999999999999665 1111000000 111345677787752 222223
Q ss_pred cceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEE-ecCC---------
Q 038577 206 VNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACD-YHRG--------- 275 (860)
Q Consensus 206 ~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~--------- 275 (860)
...+++|...|.+.+|.+..... ..|..........+.+++..+. ++.+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~---------------------g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~ 213 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSN---------------------GRFSVQFAGATTNHDSPILSIIPINADTGESALATI 213 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GG---------------------G-EEEEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred ceEEEEEeCCCCEEEEEEecCCC---------------------CceEEEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence 34899999999999998863111 2344333322233334444443 2111
Q ss_pred -----------CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEe-----eCCCEEEEEEccCCcEEEEEccCc
Q 038577 276 -----------LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFN-----ELGNWLVFGCAKLGQLLVWEWRSE 339 (860)
Q Consensus 276 -----------~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~~~~~l~~~~~~~g~i~v~d~~~~ 339 (860)
-+.+++...+..++++...+.+..+...........+.+- ..+..|++... +|.+++|.+..-
T Consensus 214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~-~G~i~i~SLP~L 292 (395)
T PF08596_consen 214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN-NGSIRIYSLPSL 292 (395)
T ss_dssp HHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET-TSEEEEEETTT-
T ss_pred hHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC-CCcEEEEECCCc
Confidence 1345666778889999998887776555222334445553 24455555554 599999999998
Q ss_pred eEEEEecCcc----cCeEEEEEcCCCCEEEEEeC
Q 038577 340 SYILKQQGHY----FDVNCLAYSPDSQLLATGAD 369 (860)
Q Consensus 340 ~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~ 369 (860)
+.+....-+. ..+....++++|..++..+.
T Consensus 293 kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 293 KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP 326 (395)
T ss_dssp -EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS
T ss_pred hHhhcccCCCccccccccccEECCCCCEEEEeCc
Confidence 8777664422 22445566777776655544
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=2e-05 Score=83.18 Aligned_cols=146 Identities=12% Similarity=0.173 Sum_probs=108.1
Q ss_pred CCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEE
Q 038577 446 GEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTV 525 (860)
Q Consensus 446 ~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 525 (860)
+++++.|+.+| .+++++.+.. + .+...|... ..+|.++++|+.||+|.|-.+.+.+ .........++.++
T Consensus 49 ~~~~~~GtH~g-~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~df~rpiksi 118 (846)
T KOG2066|consen 49 DKFFALGTHRG-AVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDD-EITQYDFKRPIKSI 118 (846)
T ss_pred cceeeeccccc-eEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCc-cceeEecCCcceeE
Confidence 67899999998 9999987633 3 333335433 5579999999999999999998876 34445567889999
Q ss_pred EEeeC-----CCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577 526 VYRPD-----GRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG 600 (860)
Q Consensus 526 ~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 600 (860)
+++|+ .+.+++|+..| +.++.-+-.........+. ..++|.+++| .|.++|-++
T Consensus 119 al~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------------------~eG~I~~i~W--~g~lIAWan 177 (846)
T KOG2066|consen 119 ALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------------------GEGPIHSIKW--RGNLIAWAN 177 (846)
T ss_pred EeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------------------CccceEEEEe--cCcEEEEec
Confidence 99997 56889999888 7777643222222222222 1357999999 688999888
Q ss_pred CCCeEEEEECCCceEEEEEeecc
Q 038577 601 SSKYICMYDVADQVLLRRFQITH 623 (860)
Q Consensus 601 ~dg~v~vwd~~~~~~~~~~~~~~ 623 (860)
++| |+|||+.+++.+..++.+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~ 199 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPS 199 (846)
T ss_pred CCC-cEEEeccccceeeccCCCC
Confidence 888 9999999999887766544
No 351
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.29 E-value=0.0016 Score=69.85 Aligned_cols=244 Identities=15% Similarity=0.165 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCEEEEEe-CCC----cEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC-----------cE
Q 038577 352 VNCLAYSPDSQLLATGA-DDN----KVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG-----------TV 415 (860)
Q Consensus 352 v~~~~~s~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----------~i 415 (860)
+....++|+|+++|.+- ..| .++++|+.+++.+...... .....+.|.++++.++....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 44678999999988653 333 5999999999776533211 1223499999988776555333 37
Q ss_pred EEEEcccccee--eEeeCCCCCc-EEEEEECCCCCEEEEEecCC---CeEEEEECCCC----ceEEEecCcccCe-EEEE
Q 038577 416 RAWDLFRYRNF--RTFTTPSSRQ-FVSLASDQSGEVICAGTLDS---FEIFVWSMKTG----RLLDILSGHEGPV-HGLV 484 (860)
Q Consensus 416 ~~wd~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~~i~v~d~~~~----~~~~~~~~h~~~v-~~l~ 484 (860)
+.|.+.+.... ..+..+.... ...+..+++++++++....+ ..+++.++..+ .....+..+...+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 77887766443 4444444444 77899999999988755433 26888898875 2233333333333 3343
Q ss_pred EcCCCCEEEEEeC---CCcEEEEEccCCcc---eeEEcccCCCeEEEEEeeCCCEEE-EEeCCCe--EEEEeCCCCceeE
Q 038577 485 FSPTNATLASSSW---DKTVRLWNVFEGKG---SVESFPHTHDVLTVVYRPDGRQLA-CSTLDGQ--IHFWDPLNGELMY 555 (860)
Q Consensus 485 ~s~~~~~l~s~~~---dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~ 555 (860)
.. .+.+++.... .+.|...++..... ...+..+...+.-..+...+.+|+ ....++. |+++++..+....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 43 4444444432 35677777776653 224555666444444445455554 4444543 8999998455544
Q ss_pred EEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEE--ecC--CCeEEEEECCCceEE
Q 038577 556 TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILA--GGS--SKYICMYDVADQVLL 616 (860)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~--~~~--dg~v~vwd~~~~~~~ 616 (860)
.+..... +.|..+...+++..+.. .+- -+++..||+.+++.-
T Consensus 364 ~~~~p~~-------------------g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 364 EIPLPEA-------------------GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEESSSS-------------------SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred eecCCcc-------------------eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4443321 23556665666654432 222 368999999998754
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.28 E-value=0.00044 Score=71.38 Aligned_cols=290 Identities=14% Similarity=0.153 Sum_probs=142.0
Q ss_pred ceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC-------
Q 038577 266 KVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS------- 338 (860)
Q Consensus 266 ~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~------- 338 (860)
.|+.+.++++..-|++|...|.|.+|.....+... ......-....+.+-+ .+++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~-------~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFS-------LNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S---------GGGSS-SEEE-GGG--TT-S
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCccccccc-------ccCCCcceEEehhhCCcccc
Confidence 58899999999999999999999999874332221 0000001111111100 0001222223321
Q ss_pred -c-eEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee--c------CCCceEEEEEee-----CC
Q 038577 339 -E-SYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT--E------HTNAVTALHFMA-----NN 403 (860)
Q Consensus 339 -~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~i~~~~-----~~ 403 (860)
+ .....+....++|++++.|.- .++|.|..+|.+.|.|++....+..-. . ....|+++.|.- |+
T Consensus 74 ~gf~P~~l~~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEEE---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred cccCchhheeccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 1 122333455789999999844 499999999999999998877766521 2 234678888862 22
Q ss_pred ---CEEEEEeCCCcEEEEEccc-cceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec----C
Q 038577 404 ---HSLLSASLDGTVRAWDLFR-YRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS----G 475 (860)
Q Consensus 404 ---~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~----~ 475 (860)
-.+++|...|.+.+|.+.- ....... .........++..+ .|..+|..+|+...... +
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v------~~~~~~~~~~~~i~--------~I~~i~~~~G~~a~At~~~~~~ 218 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSV------QFAGATTNHDSPIL--------SIIPINADTGESALATISAMQG 218 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEE------EEEEEE--SS------------EEEEEETTT--B-B-BHHHHHG
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEE------EEeeccccCCCceE--------EEEEEECCCCCcccCchhHhhc
Confidence 3577888888888887631 1100000 00001111112221 34444555554322111 1
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEe-----eCCCEEEEEeCCCeEEEEeCCC
Q 038577 476 HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYR-----PDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 476 h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
-...+ .. ..+++.+ .+..++++...+.+...+..........+.+- ..+..|++-..+|.+++|.+..
T Consensus 219 l~~g~---~i---~g~vVvv-Se~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 219 LSKGI---SI---PGYVVVV-SESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp GGGT----------EEEEEE--SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred cccCC---Cc---CcEEEEE-cccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 01100 00 1134444 46779999998887666655433344455553 3567888889999999999999
Q ss_pred CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577 551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS 602 (860)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 602 (860)
-+.+.......... ...+...+++++|+.++-.+..
T Consensus 292 Lkei~~~~l~~~~d----------------~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 292 LKEIKSVSLPPPLD----------------SRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp --EEEEEE-SS-------------------HHHHTT-EE-TTS-EEEE-SSS
T ss_pred chHhhcccCCCccc----------------cccccccEECCCCCEEEEeCcc
Confidence 99888877643211 0124556778889877666543
No 353
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.25 E-value=0.0027 Score=66.71 Aligned_cols=262 Identities=11% Similarity=0.109 Sum_probs=143.4
Q ss_pred EEEecCCCCEEEEEEcC----------C-eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 269 ACDYHRGLDMVVVGFSN----------G-VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 269 ~~~~~~~~~~l~~~~~~----------g-~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
.++.+|.|..+|+...+ . .|.+|+. .|+.+..+.-..+.+..+.|+.+.+.+++ ..+ |.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV-~~d-G~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVV-QSD-GTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEE-EcC-CEEEEEeCC
Confidence 34556666666665444 2 5899998 67777777777789999999986555544 444 999999987
Q ss_pred CceEEEEe-------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEe---ec-----CCC-ceEE-EEE
Q 038577 338 SESYILKQ-------QGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGF-CFVTF---TE-----HTN-AVTA-LHF 399 (860)
Q Consensus 338 ~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~---~~-----~~~-~v~~-i~~ 399 (860)
... ...+ .-....+....+..+|-.++ ..++.+.+.+-.... ....+ .. +.. .... ..+
T Consensus 110 G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 GEF-QFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred Cce-eechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 444 1111 11111122223343553333 334555444322211 11111 11 000 1111 223
Q ss_pred eeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCc-cc
Q 038577 400 MANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGH-EG 478 (860)
Q Consensus 400 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h-~~ 478 (860)
+.+....+....++.+.+.+-...+. .....++..+++||+|+++|.-..++ .+.+.+..-.+....+... ..
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~-----i~~~~~i~~iavSpng~~iAl~t~~g-~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ-----IDSDGPIIKIAVSPNGKFIALFTDSG-NLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc-----ccCCCCeEEEEECCCCCEEEEEECCC-CEEEEECcccceeEEeecCcCC
Confidence 44444445555555555443322111 22335799999999999999998887 8888887666666555533 34
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEe
Q 038577 479 PVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 479 ~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 558 (860)
...++.|.-++..++.- ...+.+... ... .+.|.-++..++..-.|| ++|+.-...+.++.++
T Consensus 261 ~p~~~~WCG~dav~l~~--~~~l~lvg~-----------~~~---~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 261 PPKQMAWCGNDAVVLSW--EDELLLVGP-----------DGD---SISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred CCcEEEEECCCcEEEEe--CCEEEEECC-----------CCC---ceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 56677776543332222 223333331 111 134444555556666677 8898777666666654
Q ss_pred c
Q 038577 559 G 559 (860)
Q Consensus 559 ~ 559 (860)
.
T Consensus 324 ~ 324 (410)
T PF04841_consen 324 D 324 (410)
T ss_pred H
Confidence 4
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.24 E-value=9.6e-05 Score=80.54 Aligned_cols=186 Identities=18% Similarity=0.177 Sum_probs=113.3
Q ss_pred cCCcEEEe-CCCEEEeee-------C--CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC----------
Q 038577 14 RGGNAVLS-QNTKLISPV-------G--NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---------- 73 (860)
Q Consensus 14 ~~~~~~~s-dg~~l~~~~-------~--~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---------- 73 (860)
..++.++| ||+.+++.. + ..|.+++. .+....+..+. ..+...|||||+.|++....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 44578899 999999876 3 25777776 33334444343 48999999999988877532
Q ss_pred --CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEE---EeCCCCCcccceeEEEEEee-ccCCCeEEE
Q 038577 74 --QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQI---WRSPGFKKEVFAFELIRTLA-DCNDKVTAL 147 (860)
Q Consensus 74 --~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~i---wd~~~~~~~~~~~~~~~~~~-~h~~~v~~l 147 (860)
+.+.+.++..+.... ...+.|..++|||||+.||...++.|++ -....+..... ....+. +-...+..+
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~---~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALT---NPREVGPGLGDTAVSL 502 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeec---ccEEeecccCCccccc
Confidence 233333444443322 3467899999999999999998888887 44444432111 112222 233346889
Q ss_pred EEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeec--CCCcEEEEEEccCCCCCccceEEEEcCCccEEE
Q 038577 148 NWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG--HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFS 220 (860)
Q Consensus 148 ~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~ 220 (860)
.|.+++.+ +++..++...+|.+.-... ....+.+ ...++..++-+++ .++....++.+.+
T Consensus 503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~-----~~~~~~~~n~~~~v~~vaa~~~-------~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSL-VVGRSDPEHPVWYVNLDGS-----NSDALPSRNLSAPVVAVAASPS-------TVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEE-EEEecCCCCceEEEecCCc-----cccccCCCCccCceEEEecCCc-------eEEEEcCCceEEe
Confidence 99999885 4555556566676554311 1111222 2566767766652 5666666664443
No 355
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.00015 Score=75.82 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=89.0
Q ss_pred ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec-CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-
Q 038577 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ-GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF- 384 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~- 384 (860)
..+.--+++..+++++.+++. |.+++|+-..+....... +..+.+.....+++..++|.|+..|.|.++-++.+...
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~-G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSA-GSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred ceEEEEEeecCCceEEEeccc-ceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 355566777888999999887 999999987776544332 34455666778999989999999999999987653211
Q ss_pred ----EEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc
Q 038577 385 ----VTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR 422 (860)
Q Consensus 385 ----~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~ 422 (860)
... ..|...|++++|++++..+++|...|+|..-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 23788999999999999999999999999888766
No 356
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.20 E-value=0.002 Score=61.49 Aligned_cols=208 Identities=15% Similarity=0.232 Sum_probs=118.6
Q ss_pred EeecCCCceEEEEEeeCCCEE-EEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577 386 TFTEHTNAVTALHFMANNHSL-LSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM 464 (860)
Q Consensus 386 ~~~~~~~~v~~i~~~~~~~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~ 464 (860)
.+.+-...+.+++|.|+.+.| ++....+.|..++. +++.++.+........-.+++..++.++++.-.++ .+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~-~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQ-RLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTT-EEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCC-cEEEEEE
Confidence 444556679999999986655 55556677877776 57888888887777889999988887776654555 8999988
Q ss_pred CCC--ce----EEEec-----CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccC---CcceeEE--------cccCCCe
Q 038577 465 KTG--RL----LDILS-----GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFE---GKGSVES--------FPHTHDV 522 (860)
Q Consensus 465 ~~~--~~----~~~~~-----~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~--------~~~~~~v 522 (860)
... .. ...+. .+...+-.++|.|.++.|+.+-...-..+|.+.. ....... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 432 11 11121 2445689999999888888887777777777764 2111111 1244568
Q ss_pred EEEEEeeCC-CEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecC
Q 038577 523 LTVVYRPDG-RQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGS 601 (860)
Q Consensus 523 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 601 (860)
.+++++|.. ++++....+..|..+| .+|+.+..+.-.....+- ...-...-.++|.++|++.+++ +
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl-----------~~~~~QpEGIa~d~~G~LYIvs-E 240 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL-----------SKDIPQPEGIAFDPDGNLYIVS-E 240 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG------------SS---SEEEEEE-TT--EEEEE-T
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc-----------ccccCCccEEEECCCCCEEEEc-C
Confidence 899999964 5666677778899999 678877766544321100 0001136899999999765554 5
Q ss_pred CCeEEEE
Q 038577 602 SKYICMY 608 (860)
Q Consensus 602 dg~v~vw 608 (860)
-+..++|
T Consensus 241 pNlfy~f 247 (248)
T PF06977_consen 241 PNLFYRF 247 (248)
T ss_dssp TTEEEEE
T ss_pred CceEEEe
Confidence 5555444
No 357
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00014 Score=77.09 Aligned_cols=188 Identities=14% Similarity=0.173 Sum_probs=133.1
Q ss_pred CCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE
Q 038577 391 TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL 470 (860)
Q Consensus 391 ~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~ 470 (860)
...+.+++++ ++.++.|..+|.+++++....- ...+. ... .+.+|.++++++.|| .+.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~-~s~-------~~~~Gey~asCS~DG-kv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD-HSS-------SILEGEYVASCSDDG-KVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc-ccc-------cccCCceEEEecCCC-cEEEeeccCCccc
Confidence 3455666664 5589999999999999875432 11111 111 167899999999999 9999999988887
Q ss_pred EEecCcccCeEEEEEcCC-----CCEEEEEeCCCcEEEEEcc--CCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeE
Q 038577 471 DILSGHEGPVHGLVFSPT-----NATLASSSWDKTVRLWNVF--EGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQI 543 (860)
Q Consensus 471 ~~~~~h~~~v~~l~~s~~-----~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 543 (860)
.++. -..++.+++++|+ .+.+++|+..| +.++.-. ..+.........++|.++.| .|+++|-++++| |
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v 181 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-V 181 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-c
Confidence 7766 4678999999998 56799999888 7776532 12222344567889999999 578999998888 9
Q ss_pred EEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 544 HFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 544 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
+|||+.+++.+..++........ ......+.|.++.+.++ | ..-+|+|..+.
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~--------------e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRP--------------ELFPPHLHWQDEDRLVI-G-WGDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCc--------------ccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence 99999999998887665421110 01246788887765544 3 33447777776
No 358
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.18 E-value=0.0014 Score=68.76 Aligned_cols=223 Identities=11% Similarity=0.083 Sum_probs=122.5
Q ss_pred cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE
Q 038577 305 SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCF 384 (860)
Q Consensus 305 ~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 384 (860)
....+..+.++|+|+.+++.+. |.-.++.....+.... +.-..++|.+.+ .+|+-...+.|.++.--.....
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~--geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGD--GEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEET--TEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEEcC--CEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 3445789999999999999443 8888887544443322 234467898855 5777777889999742222221
Q ss_pred EEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577 385 VTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM 464 (860)
Q Consensus 385 ~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~ 464 (860)
..+.. ...+..+.. |..|...+.+ .|.+||..+++.++.+..+ .+..+.|+++|.+++..+.+. +++++.
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~---~vk~V~Ws~~g~~val~t~~~--i~il~~ 172 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS---AVKYVIWSDDGELVALVTKDS--IYILKY 172 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-S--EEEEEE
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC---CCcEEEEECCCCEEEEEeCCe--EEEEEe
Confidence 22221 123444433 7666666554 8999999999999998865 378999999999999999885 666654
Q ss_pred CCC-----------ceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCE
Q 038577 465 KTG-----------RLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQ 533 (860)
Q Consensus 465 ~~~-----------~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 533 (860)
... .....+..-...|.+.+|..+ .++-.+.. .++. +..|+ ...+.....++.-+.+.|+.+.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~~~yllgy~~~~~~ 246 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGE-TGIIAHLDKPLYLLGYLPKENR 246 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTE-EEEEEE-SS--EEEEEETTTTE
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCC-cceEEEcCCceEEEEEEccCCE
Confidence 322 123333322567888888655 44444434 5665 44444 3333334566777778887778
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 038577 534 LACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 534 l~~~~~dg~i~iwd~~~~ 551 (860)
+.....|+.+..+.++..
T Consensus 247 ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 247 LYLIDRDGNVISYELDLS 264 (443)
T ss_dssp EEEE-TT--EEEEE--HH
T ss_pred EEEEECCCCEEEEEECHH
Confidence 888888888888877543
No 359
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.17 E-value=0.0034 Score=62.94 Aligned_cols=228 Identities=18% Similarity=0.263 Sum_probs=134.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe---------
Q 038577 359 PDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF--------- 429 (860)
Q Consensus 359 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~--------- 429 (860)
..++.|+.|+.+| +.+++........... +...|..+...++-+.+++-+ |+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 4578899999888 9999983332222222 334499999999877777665 499999998765444311
Q ss_pred ----eCCCCCcEEEEE---ECCCCCEEEEEecCCCeEEEEECCCC-----ceEEEecCcccCeEEEEEcCCCCEEEEEeC
Q 038577 430 ----TTPSSRQFVSLA---SDQSGEVICAGTLDSFEIFVWSMKTG-----RLLDILSGHEGPVHGLVFSPTNATLASSSW 497 (860)
Q Consensus 430 ----~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~i~v~d~~~~-----~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~ 497 (860)
..+....+..++ ....+..++++... .|.+|..... +..+.+. -...+.+++|. ++.++.+..
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk--~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK--KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECC--EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 122223344444 23344455555555 6777776542 4555555 35788899998 566777765
Q ss_pred CCcEEEEEccCCcceeEEcc-c------------CCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccC
Q 038577 498 DKTVRLWNVFEGKGSVESFP-H------------THDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDIS 564 (860)
Q Consensus 498 dg~i~iwd~~~~~~~~~~~~-~------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 564 (860)
++ ..+.|+.++.. ..+.. . ..++..+.. +++.+|++- |..-.+.|. .|++.+ ...-.+
T Consensus 157 ~~-f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r--~~~i~W- 227 (275)
T PF00780_consen 157 KG-FYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSR--KSTIQW- 227 (275)
T ss_pred Cc-eEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCc--ccEEEc-
Confidence 44 88889987653 22221 1 122333333 345566543 332333333 444332 000000
Q ss_pred CCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEeec
Q 038577 565 GGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQIT 622 (860)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~~~ 622 (860)
...+.++++ ...||++.+.++ |.||++.++++++.+..+
T Consensus 228 ----------------~~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 228 ----------------SSAPQSVAY--SSPYLIAFSSNS-IEVRSLETGELVQTIPLP 266 (275)
T ss_pred ----------------CCchhEEEE--ECCEEEEECCCE-EEEEECcCCcEEEEEECC
Confidence 112456666 456888877755 999999999999988754
No 360
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.17 E-value=0.005 Score=64.79 Aligned_cols=244 Identities=11% Similarity=0.122 Sum_probs=124.9
Q ss_pred cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEe-------ecCCCceEEEEEeeC
Q 038577 330 QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTF-------TEHTNAVTALHFMAN 402 (860)
Q Consensus 330 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~i~~~~~ 402 (860)
.|.+|+.... .+..+.-..+.+.++.|+.+. .|++...||.+++||+. |+....+ .-....+....+..+
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCC
Confidence 3677765443 333332222789999999865 55566789999999986 3331111 111122222233334
Q ss_pred CCEEEEEeCCCcEEEEEccccc-eeeEee-CCCC-------CcEE-EEEECCCCCEEEEEecCCCeEEEEECCCCceEEE
Q 038577 403 NHSLLSASLDGTVRAWDLFRYR-NFRTFT-TPSS-------RQFV-SLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI 472 (860)
Q Consensus 403 ~~~l~s~~~dg~i~~wd~~~~~-~~~~~~-~~~~-------~~~~-~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~ 472 (860)
|-.++ ..++.+.+..-.... ..+.+. .+.. .... ...++.+....+....++ .+.+.+-...+.
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~-~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGE-TIYIIDENSFKQ--- 212 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCC-EEEEEEcccccc---
Confidence 52233 334444333221111 111111 1100 0000 022333444333333333 555444332211
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc-cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCC
Q 038577 473 LSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP-HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 473 ~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 551 (860)
+. ..+++..+++||+++++|.-..+|.+.+.+..-.+...+... .......+.|.-+...++.- ...+.+.....
T Consensus 213 i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg~~~- 288 (410)
T PF04841_consen 213 ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVGPDG- 288 (410)
T ss_pred cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEECCCC-
Confidence 21 246899999999999999999999999988665554444332 23455667776443222222 22343333111
Q ss_pred ceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECCCceEEEEEe
Q 038577 552 ELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVADQVLLRRFQ 620 (860)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~~~~~~~~~ 620 (860)
..+.|.-++..++..-.|| ++|..-+.-+.+++.+
T Consensus 289 ---------------------------------~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp 323 (410)
T PF04841_consen 289 ---------------------------------DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP 323 (410)
T ss_pred ---------------------------------CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence 2344555565555555667 8998888888777654
No 361
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.15 E-value=0.004 Score=59.42 Aligned_cols=200 Identities=12% Similarity=0.129 Sum_probs=118.9
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGH-YFDVNCLAYSPDSQLLATGADDNKVKVWTVSS 380 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 380 (860)
+..-...+..++|.|+.+.|++.....+.|..++.+ |+.+.++.-. .+....+++..++.++++--.++.+.++++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 344445699999999999999998888999888874 6676666432 46688999988887777666689999998843
Q ss_pred Ce------eEEEee-----cCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc---cceeeEe-------eCCCCCcEEE
Q 038577 381 GF------CFVTFT-----EHTNAVTALHFMANNHSLLSASLDGTVRAWDLFR---YRNFRTF-------TTPSSRQFVS 439 (860)
Q Consensus 381 ~~------~~~~~~-----~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~-------~~~~~~~~~~ 439 (860)
.. ....+. .++..+-.++|++.++.|+.+-......+|.+.. ....... .......+.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 21 111121 2456789999999988888887777777777754 1111111 1122335788
Q ss_pred EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc---------cCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE---------GPVHGLVFSPTNATLASSSWDKTVRLW 504 (860)
Q Consensus 440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~---------~~v~~l~~s~~~~~l~s~~~dg~i~iw 504 (860)
++++|....+++-+..+..+..+| .+|+++..+.-.. ...-.|+|.++|++.++ ++-+..++|
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred eEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 899998766666666655999999 5677766553222 35778999999865554 455544443
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.09 E-value=0.0034 Score=62.88 Aligned_cols=229 Identities=20% Similarity=0.229 Sum_probs=137.4
Q ss_pred eCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE---------
Q 038577 316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVT--------- 386 (860)
Q Consensus 316 ~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 386 (860)
..++.+++|+.+ | +.+++........... +...|..+...|+-+.+++-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~-G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTED-G-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECC-C-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 457888888654 7 8999983322222221 223399999999887777665 49999999875433331
Q ss_pred -----eecCCCceEEEE--EeeCCCEEEEEeCCCcEEEEEcccc-----ceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577 387 -----FTEHTNAVTALH--FMANNHSLLSASLDGTVRAWDLFRY-----RNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454 (860)
Q Consensus 387 -----~~~~~~~v~~i~--~~~~~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (860)
.......+...+ -...+...+.......|.+|..... +..+.+..+. .+..+++. ++.++++..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~--~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPD--PPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCC--CcEEEEEe--CCEEEEEeC
Confidence 111223344444 1223334444445568888887653 4556666664 56777777 778888876
Q ss_pred CCCeEEEEECCCCceEEEecCc------------ccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCccee-EEcccCCC
Q 038577 455 DSFEIFVWSMKTGRLLDILSGH------------EGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSV-ESFPHTHD 521 (860)
Q Consensus 455 ~~~~i~v~d~~~~~~~~~~~~h------------~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~ 521 (860)
+ ...+.|+.++.....+... ..++..+.. +++.+|++- |..-.+.|. .|+... ....=...
T Consensus 157 ~--~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 157 K--GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSA 230 (275)
T ss_pred C--ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCc
Confidence 6 5899999987665544211 123333333 345666543 333344454 333222 22233345
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
+.++++. ..+|+..+. +.|.||++.++++++++..++
T Consensus 231 p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 231 PQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred hhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEECCC
Confidence 5666664 347777665 459999999999999998765
No 363
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.07 E-value=0.00082 Score=73.42 Aligned_cols=156 Identities=15% Similarity=0.047 Sum_probs=91.8
Q ss_pred CCccCeeEEEEcCCCCEEEEEc------CCC--cEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCC--eEEEE
Q 038577 50 ESSSNICRIAVSPDGTFLLTVD------ENQ--RCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGK--LVQIW 119 (860)
Q Consensus 50 ~h~~~v~~va~spdg~~la~~~------~d~--~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~--~i~iw 119 (860)
+....+...++||||+.+|+.. .|. .+.+++. .+.. ..+......+.-.|+|||+.|++..++ .+++.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3335688999999999998765 233 4555554 2322 333333458899999999988887443 22222
Q ss_pred -----------eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCc-ccccceEeec
Q 038577 120 -----------RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGI-HTNKPFLLLG 187 (860)
Q Consensus 120 -----------d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~-~~~~~~~~~~ 187 (860)
++..++. .. ...+.|..+.|||||.+++... ++.|.+=-+.....+. .......+..
T Consensus 425 ~~~~~gql~~~~vd~ge~--------~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 425 RDPATGQLARTPVDASAV--------AS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred ccCCCceEEEEeccCchh--------hh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeec
Confidence 3332221 11 2356799999999999988876 4777773333221110 1111222332
Q ss_pred -CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577 188 -HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS 224 (860)
Q Consensus 188 -h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 224 (860)
-...+.++.|..++. |+.+..++.-.+|.+.
T Consensus 494 ~l~~~~~~l~W~~~~~------L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 494 GLGDTAVSLDWRTGDS------LVVGRSDPEHPVWYVN 525 (591)
T ss_pred ccCCccccceEecCCE------EEEEecCCCCceEEEe
Confidence 334468899999986 4455555545555544
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.04 E-value=0.0051 Score=65.90 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=129.6
Q ss_pred eeEEEEcCCCCEEEEE-cCC----CcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE---e---------CCeEE
Q 038577 55 ICRIAVSPDGTFLLTV-DEN----QRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG---T---------GKLVQ 117 (860)
Q Consensus 55 v~~va~spdg~~la~~-~~d----~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~---~---------~~~i~ 117 (860)
+..+++||||+++|.+ +.. ..+++.|+.+|+.+...-....-..+.|.+|++.+... . ...|+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 4478999999999975 333 45999999999887643212222349999999887776 1 34578
Q ss_pred EEeCCCCCcccceeEEEEEeeccCC--CeEEEEEcCCCCeEEEeecC----CeEEEEeecccccCcccccceEeecCCCc
Q 038577 118 IWRSPGFKKEVFAFELIRTLADCND--KVTALNWSPDSNYLLVGSKD----LAVRLFYVKEKLKGIHTNKPFLLLGHRDS 191 (860)
Q Consensus 118 iwd~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~d~~~l~s~~~d----g~v~vwd~~~~~~~~~~~~~~~~~~h~~~ 191 (860)
.|.+.+.... - ...+..... ....+..++|+++|+..... ..+.+-+..... ........+..+...
T Consensus 206 ~~~~gt~~~~---d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~--~~~~~~~~l~~~~~~ 278 (414)
T PF02897_consen 206 RHKLGTPQSE---D--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG--SPDAKPKLLSPREDG 278 (414)
T ss_dssp EEETTS-GGG------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT--TSS-SEEEEEESSSS
T ss_pred EEECCCChHh---C--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC--CCcCCcEEEeCCCCc
Confidence 8888776432 1 122333222 25688899999998865432 345555655420 001233444444444
Q ss_pred EEE-EEEccCCCCCccceEEEEcC---CccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577 192 VVG-CFFSVDKKTDKVNRIYTIAR---DCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV 267 (860)
Q Consensus 192 i~~-~~~~~~~~~~~~~~l~s~~~---dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 267 (860)
+.. +... .+. +++.... ++.|...++..... ..|.. .+..+...+
T Consensus 279 ~~~~v~~~-~~~-----~yi~Tn~~a~~~~l~~~~l~~~~~---------------------~~~~~----~l~~~~~~~ 327 (414)
T PF02897_consen 279 VEYYVDHH-GDR-----LYILTNDDAPNGRLVAVDLADPSP---------------------AEWWT----VLIPEDEDV 327 (414)
T ss_dssp -EEEEEEE-TTE-----EEEEE-TT-TT-EEEEEETTSTSG---------------------GGEEE----EEE--SSSE
T ss_pred eEEEEEcc-CCE-----EEEeeCCCCCCcEEEEeccccccc---------------------cccee----EEcCCCCce
Confidence 433 3333 332 2222222 23444444443211 12221 222333333
Q ss_pred EEEEecCCCCEEEEE-EcC--CeEEEEECCCceeEEEEee-cCceeEEEEEeeCCCEEEEEEcc---CCcEEEEEccCce
Q 038577 268 TACDYHRGLDMVVVG-FSN--GVFGLYQMPDFVCIHLLSI-SREKITTAVFNELGNWLVFGCAK---LGQLLVWEWRSES 340 (860)
Q Consensus 268 ~~~~~~~~~~~l~~~-~~~--g~i~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~~~---~g~i~v~d~~~~~ 340 (860)
.-..+...+++|++. ..+ ..|+++++..+.....+.. ..+.+..+...++++.+.+..+. -+.+..||+.+++
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred eEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 333333445555544 444 3678889873444444443 34456666666666666555432 3577788887776
Q ss_pred EE
Q 038577 341 YI 342 (860)
Q Consensus 341 ~~ 342 (860)
..
T Consensus 408 ~~ 409 (414)
T PF02897_consen 408 LT 409 (414)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 365
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.97 E-value=0.0027 Score=65.08 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=113.4
Q ss_pred CeEEEEECCCCcEEeec-cCCccCeeE---EEEcCC----CCEEEEEcC---------C-CcEEEEEcccC-------eE
Q 038577 32 NRVSVTDLIKSKTVTLP-VESSSNICR---IAVSPD----GTFLLTVDE---------N-QRCHFINLHCH-------VV 86 (860)
Q Consensus 32 ~~i~v~d~~~~~~~~~~-~~h~~~v~~---va~spd----g~~la~~~~---------d-~~i~vwd~~~~-------~~ 86 (860)
+.|++.|..+.+.+... ......+.+ +.+..+ ..++++|.. . |.|.++++... +.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 46888998888764322 123333444 444433 578887632 2 89999999884 33
Q ss_pred EEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEE
Q 038577 87 LHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVR 166 (860)
Q Consensus 87 ~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~ 166 (860)
+.....+++|++++-- +.+|+++.++.|.+|++...+. +.....+.. ...+.++... +++++.|.....+.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~----l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~ 152 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKT----LLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVS 152 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSS----EEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCccc----chhhheecc-eEEEEEEecc--ccEEEEEEcccCEE
Confidence 3444478999999876 3448888899999999988761 112222222 2356666554 56999999888899
Q ss_pred EEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577 167 LFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG 225 (860)
Q Consensus 167 vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 225 (860)
++..+..... .....-......+.++.|.++++ .++.+..+|.+.++....
T Consensus 153 ~~~~~~~~~~---l~~va~d~~~~~v~~~~~l~d~~-----~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 153 LLRYDEENNK---LILVARDYQPRWVTAAEFLVDED-----TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEETTTE----EEEEEEESS-BEEEEEEEE-SSS-----EEEEEETTSEEEEEEE-S
T ss_pred EEEEEccCCE---EEEEEecCCCccEEEEEEecCCc-----EEEEEcCCCeEEEEEECC
Confidence 8876653111 11122233456688999987776 899999999999998864
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0044 Score=63.54 Aligned_cols=173 Identities=11% Similarity=0.094 Sum_probs=107.4
Q ss_pred CcEEEEECCCCeeEEEeecC-CCceEEEEEee-------CCCEEEEEeC----------CCcEEEEEcccc-----ceee
Q 038577 371 NKVKVWTVSSGFCFVTFTEH-TNAVTALHFMA-------NNHSLLSASL----------DGTVRAWDLFRY-----RNFR 427 (860)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~-~~~v~~i~~~~-------~~~~l~s~~~----------dg~i~~wd~~~~-----~~~~ 427 (860)
..|++.|..+.+.+..+.-. ...+.+++... ...+++.|.. .|.+.++++.+. +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888777766655432 33455544432 2456665542 288999999884 3322
Q ss_pred EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-eEEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 428 TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-LLDILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
.........+.+++.- +..++++... .+++|++...+ ....-.- ....+.++... +.+++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~g~--~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAVGN--KLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEETT--EEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEeecC--EEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 2233345567777665 3345555543 89999998877 4433221 22355666554 66999999888888886
Q ss_pred ccCCcc-eeEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577 506 VFEGKG-SVESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL 549 (860)
Q Consensus 506 ~~~~~~-~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 549 (860)
...... ..... .....++++.|-++++.+++++.+|.+.++..+
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 654322 22222 245568899998777899999999999999875
No 367
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=97.90 E-value=0.00011 Score=62.56 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=101.4
Q ss_pred hhcCcCCcHHHHHHHHhcCChHHHHHHhHhcC----------CCccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHH
Q 038577 732 AALNEDQPKRALILSLRLNEDNLIKKCIFAIS----------PVDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLR 801 (860)
Q Consensus 732 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~----------~~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~ 801 (860)
..+..++|..++..|++++-.-.++++++.+- -..|+.++..|+.+.+..||+|+..|-.+.++...+|.
T Consensus 6 N~l~~~~y~~Al~LAl~L~~P~~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~~vAQ~ 85 (141)
T PF08625_consen 6 NLLRQKDYKEALRLALKLDHPFRLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTSHVAQR 85 (141)
T ss_pred HHHHhhhHHHHHHHHHhcCCcHHHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 44567899999999999998888887777665 14589999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh-hhhcccchhHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHh
Q 038577 802 WCQELCKTHGNT-IQQNSRNLLPSLKSLQKSITRIHQDLADTCSSNEYMLQYLC 854 (860)
Q Consensus 802 ~l~~~l~~H~~~-l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~ 854 (860)
.|+.+|+.|... |...+ .+.+.++.|.-=-++.+++++++... .++|.|+-
T Consensus 86 vL~~il~~~~~~~L~~~~-~~~~~le~lipYteRH~~Rl~~L~q~-syllDy~l 137 (141)
T PF08625_consen 86 VLNAILKSHPPEELLKIP-GLKEILEALIPYTERHFQRLDRLLQK-SYLLDYTL 137 (141)
T ss_pred HHHHHHHhCCHHHHHccc-cHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999998654 44554 78888888888889999999997765 44667654
No 368
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.012 Score=58.39 Aligned_cols=200 Identities=16% Similarity=0.169 Sum_probs=126.3
Q ss_pred EEcCCCCE-EEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCC--
Q 038577 356 AYSPDSQL-LATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTP-- 432 (860)
Q Consensus 356 ~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-- 432 (860)
.|.++... +.+--..+.|.-|+..++.... +. +.+.+.++.....+..|+++.. .+.+++..++.....+...
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 46666663 4444456788888887654332 22 2333444444444445555543 4566676555543333221
Q ss_pred --CCCcEEEEEECCCCCEEEEEec-----C-----CCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCC-C
Q 038577 433 --SSRQFVSLASDQSGEVICAGTL-----D-----SFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWD-K 499 (860)
Q Consensus 433 --~~~~~~~~~~~~~~~~l~~~~~-----~-----~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d-g 499 (860)
.........+.|+|.+.+.... . .+.++.+|. .+..++.+..+-..-+.|+||||++.|..+... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 2234567888999998877655 1 124555554 577777777777777899999999888877654 7
Q ss_pred cEEEEEccC--Cc---c--eeEEcccCCCeEEEEEeeCCCEEEEEeCCC-eEEEEeCCCCceeEEEeccc
Q 038577 500 TVRLWNVFE--GK---G--SVESFPHTHDVLTVVYRPDGRQLACSTLDG-QIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 500 ~i~iwd~~~--~~---~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 561 (860)
.|.-|++.. +. . ........+..-.++...+|.+.+++..+| .|.+|+.. |+++..+..+.
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 788887752 11 1 111112445666788888998876655554 89999998 99999888774
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.0098 Score=59.12 Aligned_cols=222 Identities=13% Similarity=0.038 Sum_probs=132.3
Q ss_pred EEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec--
Q 038577 312 AVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE-- 389 (860)
Q Consensus 312 ~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-- 389 (860)
..|.++...|+.+.-..+.|.-|+..++...... +...+.++..-..+..|+++.. .+.+++.+++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~--~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP--SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE--CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3456666766666666688888888765433221 2222344444444445555443 466777665555333221
Q ss_pred ---CCCceEEEEEeeCCCEEEEEeC-----C----CcEEEEEcc-ccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC
Q 038577 390 ---HTNAVTALHFMANNHSLLSASL-----D----GTVRAWDLF-RYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS 456 (860)
Q Consensus 390 ---~~~~v~~i~~~~~~~~l~s~~~-----d----g~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (860)
.....+.....|+|.+.++... . ..-.+|-+. .+...+.+ ...-...+.++||||++.++.+....
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCCC
Confidence 1235567888899876664433 0 111344444 33333333 22233457899999999999988876
Q ss_pred CeEEEEECCC--C----c-eEEEecCcccCeEEEEEcCCCCEEEEEeCCC-cEEEEEccCCcceeEEcccCCCeEEEEEe
Q 038577 457 FEIFVWSMKT--G----R-LLDILSGHEGPVHGLVFSPTNATLASSSWDK-TVRLWNVFEGKGSVESFPHTHDVLTVVYR 528 (860)
Q Consensus 457 ~~i~v~d~~~--~----~-~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 528 (860)
+.|+-|++.. + + ....+..+.+..-.++...+|.+.+++..+| .|.+|+.. ++.+....-....+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 6899998762 2 1 1122233456667788888888876555554 89999987 76666665555777777775
Q ss_pred -eCCCEEEEEeC
Q 038577 529 -PDGRQLACSTL 539 (860)
Q Consensus 529 -~~~~~l~~~~~ 539 (860)
|+.+.|++.+.
T Consensus 264 G~~~~~L~iTs~ 275 (307)
T COG3386 264 GPDLNTLYITSA 275 (307)
T ss_pred CCCcCEEEEEec
Confidence 34555555543
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.0097 Score=55.55 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=144.3
Q ss_pred EEEEecCCCCE-EEEEEcCCe-EEEEECCCceeEEEEeecCc--eeEEEEEeeCCCEEEEEEcc----CCcEEEEEccCc
Q 038577 268 TACDYHRGLDM-VVVGFSNGV-FGLYQMPDFVCIHLLSISRE--KITTAVFNELGNWLVFGCAK----LGQLLVWEWRSE 339 (860)
Q Consensus 268 ~~~~~~~~~~~-l~~~~~~g~-i~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~~----~g~i~v~d~~~~ 339 (860)
..++++|.... ++.+-.-|+ ..++|....+.+..+....+ -.-.-.|||||.+|..+-.+ .|.|-+||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 45666775543 445555554 45788877777766654433 24456899999999887543 378999998754
Q ss_pred -eEEEEecCcccCeEEEEEcCCCCEEEEEeCC------------------CcEEEEECCCCeeEEE--ee--cCCCceEE
Q 038577 340 -SYILKQQGHYFDVNCLAYSPDSQLLATGADD------------------NKVKVWTVSSGFCFVT--FT--EHTNAVTA 396 (860)
Q Consensus 340 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------g~i~iwd~~~~~~~~~--~~--~~~~~v~~ 396 (860)
..+.++..|.-....+.+.+||+.++.+... -++.+.|..+|..+.. +. .+.-.|..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 4456667777777889999999998876431 1222333333433321 11 24456778
Q ss_pred EEEeeCCCEEEEEeCCCc-----EEEEEccccceeeEeeCCCC------CcEEEEEECCCCCEEEEEecCCCeEEEEECC
Q 038577 397 LHFMANNHSLLSASLDGT-----VRAWDLFRYRNFRTFTTPSS------RQFVSLASDQSGEVICAGTLDSFEIFVWSMK 465 (860)
Q Consensus 397 i~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~ 465 (860)
++..+||..++.+-..|. --+=-...++.+..+..+.. ..+-+++.+.+..+++..+..++...+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 888888866555433331 11112233444444444332 3467888888888888888888799999999
Q ss_pred CCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 466 TGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 466 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
+|..+..-.- .....++- ...-++..+.+|.+.++.
T Consensus 311 tG~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGAVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCcEEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 9988754321 11222333 333356666788888774
No 371
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0038 Score=69.20 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=101.2
Q ss_pred CEEEEEEccCCcEEEEEccCceEEEEecCcccC-eEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCe--eEEE-e--
Q 038577 319 NWLVFGCAKLGQLLVWEWRSESYILKQQGHYFD-VNCLAYSP-----DSQLLATGADDNKVKVWTVSSGF--CFVT-F-- 387 (860)
Q Consensus 319 ~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~-v~~~~~s~-----~~~~l~~~~~dg~i~iwd~~~~~--~~~~-~-- 387 (860)
+.|+....+...|+-.|++.|+.+..+..|... |..++-.. +....++|-.++.+..||++-.. ++.. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344444345588999999999999999877644 55544321 13345677788899999988532 2211 1
Q ss_pred ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEEC
Q 038577 388 TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSM 464 (860)
Q Consensus 388 ~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~ 464 (860)
........|++-+.+| +|++|+.+|.||+||- .++..++....-..+|..+.++.||+++++.+.. .+.+++.
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t--yLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCKT--YLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc--eEEEEEE
Confidence 1234567788877777 8999999999999994 4444555544556799999999999999988876 6888775
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.70 E-value=0.0011 Score=73.22 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=95.6
Q ss_pred CCCcEEEEEccccceeeEeeCCCCCcEEEEEECC-----CCCEEEEEecCCCeEEEEECCCC--ceEEE-e--cCcccCe
Q 038577 411 LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQ-----SGEVICAGTLDSFEIFVWSMKTG--RLLDI-L--SGHEGPV 480 (860)
Q Consensus 411 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~i~v~d~~~~--~~~~~-~--~~h~~~v 480 (860)
....++-.|+.+++.+..+......++..++.+. ...-.++|-.++ .+..||.+-. +++.. . .......
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n-~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDN-SLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCC-ceEEeccCCCCCceeeccccccccCCCc
Confidence 4578999999999999999988776666665432 123344565666 8999999853 23311 1 1234567
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE-EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577 481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE-SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP 548 (860)
Q Consensus 481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 548 (860)
+|++-+.+| +||.|+.+|.||+||-. +..... +.+...+|..|..+.||+++++.+ +..+.+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 788777666 79999999999999943 333333 335689999999999999988877 556778875
No 373
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=97.70 E-value=0.00041 Score=60.31 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=101.1
Q ss_pred HHHHHhhcCcCCcHHHHHHHH-hcCChHHHHHHhHhcCC-CccchhcccCCHHHHHHHHHHHHhhhccCCChhhHHHHHH
Q 038577 727 PEAVDAALNEDQPKRALILSL-RLNEDNLIKKCIFAISP-VDIPAVASSIPYRYMQRLIEALSDLLESCPHLEFMLRWCQ 804 (860)
Q Consensus 727 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~-~~i~~~~~~l~~~~~~~ll~~l~~~l~~~~~~~~~~~~l~ 804 (860)
.......+..-+|..+|..++ ...+.+.+..+|+.+.. ..++.++...+...+.++|+|+...+...+.+.++.-++.
T Consensus 22 l~~~D~~Lr~F~y~~ALD~aL~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~ 101 (148)
T PF09384_consen 22 LSKYDKLLRKFRYKKALDAALVKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRILVDVAN 101 (148)
T ss_pred chHHHHHHHcCCHHHHHHHHHhcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 334455667789999999999 67888999999888875 7889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhh
Q 038577 805 ELCKTHGNTIQQNSRNLLPSLKSLQKSITRIHQDLADTCS 844 (860)
Q Consensus 805 ~~l~~H~~~l~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~ 844 (860)
.+|-+.+..+..++ .+...+..|++.+++..+..++++.
T Consensus 102 ~ildiY~~~~~~s~-~v~~~~~~L~~~v~~E~~~~~~l~~ 140 (148)
T PF09384_consen 102 IILDIYSPVIGQSP-EVDKLFQKLQRKVQEELQLQKELLE 140 (148)
T ss_pred HHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997765 7888999999999988776666543
No 374
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.70 E-value=0.021 Score=58.81 Aligned_cols=89 Identities=15% Similarity=0.093 Sum_probs=60.5
Q ss_pred eccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCce-eEEEEEeeC-----------------C
Q 038577 257 KDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREK-ITTAVFNEL-----------------G 318 (860)
Q Consensus 257 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~-i~~~~~s~~-----------------~ 318 (860)
...+......+.+++.+|.+++.++...-|.|.++|+..+..++.+++-.+. +.-+..... .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 3445556667899999999998888877799999999988888777665432 111111111 1
Q ss_pred CEEEEEEccCCcEEEEEccCceEEEEe
Q 038577 319 NWLVFGCAKLGQLLVWEWRSESYILKQ 345 (860)
Q Consensus 319 ~~l~~~~~~~g~i~v~d~~~~~~~~~~ 345 (860)
.+|++-....|.|.||.++.+..+..+
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 234444444589999998887766554
No 375
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.02 Score=54.14 Aligned_cols=173 Identities=12% Similarity=0.144 Sum_probs=122.5
Q ss_pred eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC
Q 038577 387 FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT 466 (860)
Q Consensus 387 ~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~ 466 (860)
+.+-...+.++.|+|+.+.|++......-.++=-..++.+++++...-.....+.+..+|.++++--.+. .++++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~-~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDR-ALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcc-eEEEEEEcC
Confidence 3445566999999999999999988888888877789999999888777778888888888887777776 888888775
Q ss_pred CceEEEe----------cCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc---c-------cCCCeEEEE
Q 038577 467 GRLLDIL----------SGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF---P-------HTHDVLTVV 526 (860)
Q Consensus 467 ~~~~~~~----------~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~-------~~~~v~~~~ 526 (860)
+..+... .........++|.|....|..+-+-.-+.||.+.......... . .-..+.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 5322111 1124567889999999999988888888888776443111111 1 123567788
Q ss_pred Eee-CCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 527 YRP-DGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 527 ~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
|.+ .+.+|+-+.+++.+.-.|. +|..+..+.-+.
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~ 274 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDL-SGEVIELLSLTK 274 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEec-CCCeeeeEEecc
Confidence 886 4556666777777777776 455555554443
No 376
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.64 E-value=0.19 Score=56.92 Aligned_cols=194 Identities=10% Similarity=0.093 Sum_probs=117.0
Q ss_pred CCEEEEEEccCCcEEEEEccCceEEEEecCccc--------CeEEEEEc----------------CCCCEEEEEeCCCcE
Q 038577 318 GNWLVFGCAKLGQLLVWEWRSESYILKQQGHYF--------DVNCLAYS----------------PDSQLLATGADDNKV 373 (860)
Q Consensus 318 ~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~--------~v~~~~~s----------------~~~~~l~~~~~dg~i 373 (860)
+..+.+++.. +.|.-.|..+|+.+.++..... ..+.+++. .++..++.++.|+.+
T Consensus 194 gg~lYv~t~~-~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPH-NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCC-CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 3444444443 7888888888888777643211 01223332 134578889999999
Q ss_pred EEEECCCCeeEEEeecCCCceE-------------EEEEee--CCCEEEEEeC----------CCcEEEEEccccceeeE
Q 038577 374 KVWTVSSGFCFVTFTEHTNAVT-------------ALHFMA--NNHSLLSASL----------DGTVRAWDLFRYRNFRT 428 (860)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~v~-------------~i~~~~--~~~~l~s~~~----------dg~i~~wd~~~~~~~~~ 428 (860)
.-.|..+|+....+.. .+.|. .+.-.| .+..++.++. +|.|+-+|..+++....
T Consensus 273 iALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999999998876632 11110 011111 1235565542 68899999999998877
Q ss_pred eeCCCC-----------------CcEEEEEECCCCCEEEEEecC-----------------CCeEEEEECCCCceEEEec
Q 038577 429 FTTPSS-----------------RQFVSLASDQSGEVICAGTLD-----------------SFEIFVWSMKTGRLLDILS 474 (860)
Q Consensus 429 ~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~-----------------~~~i~v~d~~~~~~~~~~~ 474 (860)
+..... ..-..+++++....++.+..+ .+.|.-.|.++|+..-.++
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 753210 011345666666666653321 1267778889999887775
Q ss_pred CcccCeE---------EEEEcC-CCC---EEEEEeCCCcEEEEEccCCccee
Q 038577 475 GHEGPVH---------GLVFSP-TNA---TLASSSWDKTVRLWNVFEGKGSV 513 (860)
Q Consensus 475 ~h~~~v~---------~l~~s~-~~~---~l~s~~~dg~i~iwd~~~~~~~~ 513 (860)
.....+. -+.+.. +|+ .++.++.+|.+++.|-++++.+.
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 4211111 122222 553 78889999999999998887543
No 377
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.025 Score=52.94 Aligned_cols=267 Identities=11% Similarity=0.099 Sum_probs=150.7
Q ss_pred ccCeEEEEeecCCceeEEEECCCCC-EEEEE--eCCeEEEEeCCCCCcccc-eeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577 82 HCHVVLHRVRFKYPVNAILFSPNGK-YIAVG--TGKLVQIWRSPGFKKEVF-AFELIRTLADCNDKVTALNWSPDSNYLL 157 (860)
Q Consensus 82 ~~~~~~~~~~~~~~v~~~~fspdg~-~la~~--~~~~i~iwd~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 157 (860)
+.|+++........-..|+|+|-.. -++.+ ..-...++|..+.+.... ....-+.+.+| =.|||||.+|.
T Consensus 56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LY 129 (366)
T COG3490 56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLY 129 (366)
T ss_pred cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEE
Confidence 3577777777788888999999764 45555 345677899888764210 00011223344 36999999998
Q ss_pred EeecC-----CeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEe-eecCCCCCCc
Q 038577 158 VGSKD-----LAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSW-GFSGNDGKID 231 (860)
Q Consensus 158 s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w-~~~~~~~~~~ 231 (860)
..-+| |.|-|||...+. ...-.+..|.-....+.+.+||. .++.+. |-|..- +....+. .
T Consensus 130 ATEndfd~~rGViGvYd~r~~f-----qrvgE~~t~GiGpHev~lm~DGr-----tlvvan--GGIethpdfgR~~l--N 195 (366)
T COG3490 130 ATENDFDPNRGVIGVYDAREGF-----QRVGEFSTHGIGPHEVTLMADGR-----TLVVAN--GGIETHPDFGRTEL--N 195 (366)
T ss_pred eecCCCCCCCceEEEEeccccc-----ceecccccCCcCcceeEEecCCc-----EEEEeC--CceecccccCcccc--c
Confidence 76543 789999998662 34556777887888899999998 666654 333332 1111000 0
Q ss_pred cccCCCCCCCCCCCcceeeeEEeeeecccc--CCCCceEEEEecCCCCEEEEEEcCCeE-----EEEECCCceeEEEEee
Q 038577 232 ETMEDSEPPSPGTPERRVKKWGLLRKDDFS--QAPSKVTACDYHRGLDMVVVGFSNGVF-----GLYQMPDFVCIHLLSI 304 (860)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~g~i-----~~~~~~~~~~~~~~~~ 304 (860)
....++. -..-+...-++..+..++ .+.-.+..++..++|..++-+-..|.- .+=-...++.+..+..
T Consensus 196 ldsMePS-----lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~ 270 (366)
T COG3490 196 LDSMEPS-----LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDL 270 (366)
T ss_pred hhhcCcc-----EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCC
Confidence 0000000 000000011122233343 345567788888888766544333210 0000112222222222
Q ss_pred cC-------ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 305 SR-------EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT 377 (860)
Q Consensus 305 ~~-------~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 377 (860)
.. .-|-+++.+.+..+++.++-..+...+||..++..+....-. .+..++- ...-+++.+.+|.+.++.
T Consensus 271 pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 271 PEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence 21 346788888888888888877678899999999887654321 1223333 333355666678888774
No 378
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.64 E-value=0.094 Score=53.23 Aligned_cols=222 Identities=11% Similarity=0.118 Sum_probs=113.7
Q ss_pred CCCEEEEEEccCCcEEEEEccCc----eEEEEecC---cc----cCeEEEEEcCCCCEEEEEeC------CCcEEEEECC
Q 038577 317 LGNWLVFGCAKLGQLLVWEWRSE----SYILKQQG---HY----FDVNCLAYSPDSQLLATGAD------DNKVKVWTVS 379 (860)
Q Consensus 317 ~~~~l~~~~~~~g~i~v~d~~~~----~~~~~~~~---~~----~~v~~~~~s~~~~~l~~~~~------dg~i~iwd~~ 379 (860)
+.++|++.+-.++.|+|.|+.+. +....+.. +. .....+..-|+|+.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 56888888888899999998743 33333321 11 22334455678888887532 3568888888
Q ss_pred CCeeEEEeecCCC---ceEEEEEeeCCCEEEEEeC--------------------CCcEEEEEccccceeeEeeCCCCCc
Q 038577 380 SGFCFVTFTEHTN---AVTALHFMANNHSLLSASL--------------------DGTVRAWDLFRYRNFRTFTTPSSRQ 436 (860)
Q Consensus 380 ~~~~~~~~~~~~~---~v~~i~~~~~~~~l~s~~~--------------------dg~i~~wd~~~~~~~~~~~~~~~~~ 436 (860)
+.+.......... --..+-|.|..+.++|... ..++.+||+.+.+.++++..+....
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7777766654322 2356677887778887653 3479999999999999999886543
Q ss_pred -EEEEEE--CCCCCEEEEEecCCCeEEEEEC-CCCce----EEEecCc-----------------ccCeEEEEEcCCCCE
Q 038577 437 -FVSLAS--DQSGEVICAGTLDSFEIFVWSM-KTGRL----LDILSGH-----------------EGPVHGLVFSPTNAT 491 (860)
Q Consensus 437 -~~~~~~--~~~~~~l~~~~~~~~~i~v~d~-~~~~~----~~~~~~h-----------------~~~v~~l~~s~~~~~ 491 (860)
...+.| .|+..+-++++.-...|..|-- ..++- +..+... ..-|++|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 334554 5666666666554446666654 33321 1122110 245799999999999
Q ss_pred EEEEeC-CCcEEEEEccCCcceeEEc----c---------------cCCCeEEEEEeeCCCEEEEEe
Q 038577 492 LASSSW-DKTVRLWNVFEGKGSVESF----P---------------HTHDVLTVVYRPDGRQLACST 538 (860)
Q Consensus 492 l~s~~~-dg~i~iwd~~~~~~~~~~~----~---------------~~~~v~~~~~s~~~~~l~~~~ 538 (860)
|..+.. +|.|+.||+.........- + ..+...-+..|-||+.|++.+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 887765 8999999998765332211 1 112335677888888887764
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.64 E-value=2.3e-05 Score=80.44 Aligned_cols=207 Identities=13% Similarity=0.144 Sum_probs=129.3
Q ss_pred CccCeeEEEEcCCC--CEEEEEcCCCcEEEEEcccCeEE---EEeecCCceeEEEECC-CCCEEEEE-----eCCeEEEE
Q 038577 51 SSSNICRIAVSPDG--TFLLTVDENQRCHFINLHCHVVL---HRVRFKYPVNAILFSP-NGKYIAVG-----TGKLVQIW 119 (860)
Q Consensus 51 h~~~v~~va~spdg--~~la~~~~d~~i~vwd~~~~~~~---~~~~~~~~v~~~~fsp-dg~~la~~-----~~~~i~iw 119 (860)
....+.|++.+-+. ..+++|..+|.|.+-.+....-- ..-++..+.++++|++ |...||+| .+..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 34567788777544 46788888999998876543221 2223677899999998 67889998 56799999
Q ss_pred eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEcc
Q 038577 120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSV 199 (860)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~ 199 (860)
|+.++-.. |+.-..-..+......+++|..|.+.+.+|...+.+.++|+.... .....-.+..+..+...|
T Consensus 135 di~s~ltv--Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------~~~~svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 135 DINSLLTV--PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------DSVSSVNTKYVQGITVDP 205 (783)
T ss_pred ecccccCC--CccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-------hhhhhhhhhhcccceecC
Confidence 99986221 111111111233445688999999999999999999999987441 111112233455666777
Q ss_pred -CCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCE
Q 038577 200 -DKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDM 278 (860)
Q Consensus 200 -~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 278 (860)
.+. ++++-. ||.+.+||...+........ ..........+..++|+|..+-
T Consensus 206 ~~~n-----Y~cs~~-dg~iAiwD~~rnienpl~~i----------------------~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 206 FSPN-----YFCSNS-DGDIAIWDTYRNIENPLQII----------------------LRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred CCCC-----ceeccc-cCceeeccchhhhccHHHHH----------------------hhCCCCcccceeeEEeccCCcc
Confidence 444 666665 99999999533211000000 1111122346889999996543
Q ss_pred -EEEEE-cCCeEEEEECC
Q 038577 279 -VVVGF-SNGVFGLYQMP 294 (860)
Q Consensus 279 -l~~~~-~~g~i~~~~~~ 294 (860)
+++.. ..+.|++|++.
T Consensus 258 lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhhhccCcceEEEeccc
Confidence 33333 44788888873
No 380
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.63 E-value=0.0087 Score=61.60 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=65.4
Q ss_pred ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEec-CCCE
Q 038577 517 PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGSY 595 (860)
Q Consensus 517 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~ 595 (860)
.....+.+++.+|++++.|+.+.=|.|.++|+.++..++..+|-++..-+-......... +...-....-.+ ...+
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~---~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDR---DRSNSNSPKSSSRFALF 381 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeeccccc---ccccccccCCCCcceEE
Confidence 455668999999999999998888999999999999999888877632110000000000 000000000000 0122
Q ss_pred -EEEecCCCeEEEEECCCceEEEEEeecc
Q 038577 596 -ILAGGSSKYICMYDVADQVLLRRFQITH 623 (860)
Q Consensus 596 -l~~~~~dg~v~vwd~~~~~~~~~~~~~~ 623 (860)
++-+-.-|.|.||.+.+|..+..+...+
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEeCC
Confidence 3345678999999999999998887644
No 381
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.62 E-value=0.035 Score=50.39 Aligned_cols=231 Identities=14% Similarity=0.186 Sum_probs=127.8
Q ss_pred CCcEEEe-CCCEEEeee--CCeEEEEECCCCcEEeeccCCccCeeEEEEcCCC---CEEEEEcCCCcEEEEE--cccCeE
Q 038577 15 GGNAVLS-QNTKLISPV--GNRVSVTDLIKSKTVTLPVESSSNICRIAVSPDG---TFLLTVDENQRCHFIN--LHCHVV 86 (860)
Q Consensus 15 ~~~~~~s-dg~~l~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg---~~la~~~~d~~i~vwd--~~~~~~ 86 (860)
|....|. +.+.|.+.. .+.|.-||.++++......+- .....+.+--.| .+.+.++..-.|.-|| .+....
T Consensus 17 GEgp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~-p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v 95 (310)
T KOG4499|consen 17 GEGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG-PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKV 95 (310)
T ss_pred CCCCceEEecceEEEEEeccCceehhhhhhhheEEEEEec-CcceeEEEEecCCCceEEEeecceEEEEEcccccceeee
Confidence 3467788 667777653 467777999998775443221 113333333222 3444444433444577 333344
Q ss_pred EEEee------cCCceeEEEECCCCCEEEEE-e---------CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEc
Q 038577 87 LHRVR------FKYPVNAILFSPNGKYIAVG-T---------GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWS 150 (860)
Q Consensus 87 ~~~~~------~~~~v~~~~fspdg~~la~~-~---------~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 150 (860)
.+++. .+.+.++-..+|+|++.+-. . .+.++.|-.... +..+...-+--+.++|+
T Consensus 96 ~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---------v~~i~~~v~IsNgl~Wd 166 (310)
T KOG4499|consen 96 YRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---------VELIWNCVGISNGLAWD 166 (310)
T ss_pred eeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---------ceeeehhccCCcccccc
Confidence 44421 34567777889999996544 1 244555533322 12222233334567777
Q ss_pred CCCCeEEE-eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCC
Q 038577 151 PDSNYLLV-GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGK 229 (860)
Q Consensus 151 ~d~~~l~s-~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~ 229 (860)
.|.+.+.. -+.+-+|.-||.+-. .+ . .+ ..=.++|++..+.
T Consensus 167 ~d~K~fY~iDsln~~V~a~dyd~~-tG---~----------------~s-----------------nr~~i~dlrk~~~- 208 (310)
T KOG4499|consen 167 SDAKKFYYIDSLNYEVDAYDYDCP-TG---D----------------LS-----------------NRKVIFDLRKSQP- 208 (310)
T ss_pred ccCcEEEEEccCceEEeeeecCCC-cc---c----------------cc-----------------CcceeEEeccCCC-
Confidence 66654443 345556666664322 00 0 00 0001222222100
Q ss_pred CccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCcee
Q 038577 230 IDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKI 309 (860)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i 309 (860)
+ ..-....++...+|++.++....|.|..+|..+++.+.++......+
T Consensus 209 ------------------------------~--e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 209 ------------------------------F--ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred ------------------------------c--CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 0 00011223445688888888999999999999999999999999999
Q ss_pred EEEEEeeCC-CEEEEEE
Q 038577 310 TTAVFNELG-NWLVFGC 325 (860)
Q Consensus 310 ~~~~~s~~~-~~l~~~~ 325 (860)
++++|--.. ..+.+++
T Consensus 257 tsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 257 TSCCFGGKNLDILYVTT 273 (310)
T ss_pred EEEEecCCCccEEEEEe
Confidence 999997432 3444443
No 382
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=97.60 E-value=0.2 Score=56.01 Aligned_cols=173 Identities=13% Similarity=0.046 Sum_probs=95.3
Q ss_pred cEEEEECCCCeeEEEeecCC----CceEEEEEeeCCC--EEEEEe-----------CCCcEEEEEccccceeeEeeCCCC
Q 038577 372 KVKVWTVSSGFCFVTFTEHT----NAVTALHFMANNH--SLLSAS-----------LDGTVRAWDLFRYRNFRTFTTPSS 434 (860)
Q Consensus 372 ~i~iwd~~~~~~~~~~~~~~----~~v~~i~~~~~~~--~l~s~~-----------~dg~i~~wd~~~~~~~~~~~~~~~ 434 (860)
.|+++|..+++.+..+.-.. -.+.++.|+.... ++++++ .+|.++.|++-.....-.+.....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 47777777666555443211 1345555554332 222222 234566666644333222222222
Q ss_pred CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcc-
Q 038577 435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKG- 511 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~- 511 (860)
..-.-.++.|-..++++|-.+ .+++||+...++++... .-...|+.+.+ .+..++.|...-.+.++..+....
T Consensus 934 ~~~~v~Ai~~f~~~~LagvG~--~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGVGR--FLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CCccceEEeccCCEEEEeccc--EEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 223345666766677777655 89999998877765433 22456777776 567788887655566555443322
Q ss_pred eeEEc--ccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCC
Q 038577 512 SVESF--PHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPL 549 (860)
Q Consensus 512 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 549 (860)
...+. ..+..|+++.+- |...+|.++.=|.+.+-.+.
T Consensus 1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 33333 234456666555 55568888777777766553
No 383
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.54 E-value=0.022 Score=55.58 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=92.5
Q ss_pred cCCcEEEe-CCCEEEeee--CC--eEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEE-cccCeEE
Q 038577 14 RGGNAVLS-QNTKLISPV--GN--RVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFIN-LHCHVVL 87 (860)
Q Consensus 14 ~~~~~~~s-dg~~l~~~~--~~--~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd-~~~~~~~ 87 (860)
...+.++| ||+.+|+.. ++ .+.++........ .. ....++...|+++|...++...+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-ec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 45578999 999998866 43 4666654333322 22 223789999999998887777666667764 3333322
Q ss_pred -EEee---cCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcc--cceeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577 88 -HRVR---FKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKE--VFAFELIRTLADCNDKVTALNWSPDSNYLL 157 (860)
Q Consensus 88 -~~~~---~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~--~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 157 (860)
.... ....|+++++||||..+|... ++.|.|=-+...... ................+..++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222 222899999999999999884 678887655432211 000111222223456789999999998777
Q ss_pred EeecC
Q 038577 158 VGSKD 162 (860)
Q Consensus 158 s~~~d 162 (860)
.+...
T Consensus 182 ~~~~~ 186 (253)
T PF10647_consen 182 LGRSA 186 (253)
T ss_pred EeCCC
Confidence 66543
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00042 Score=71.56 Aligned_cols=91 Identities=21% Similarity=0.289 Sum_probs=74.6
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEee-cCCcee-EEEECCCCCEEEEE-eCCeEEEEeCCCCCcccc
Q 038577 53 SNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVR-FKYPVN-AILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVF 129 (860)
Q Consensus 53 ~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~-~~~~v~-~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~ 129 (860)
..|.-+.|+|.-.++|++..+|.+.+..+. .+.+..++ +..+++ +++|.|||++||+| .||+|++.|+.++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~--- 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR--- 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc---
Confidence 467889999999999999999999999988 78888888 777788 99999999999999 899999999998864
Q ss_pred eeEEEEEeeccCCCeEEEEEc
Q 038577 130 AFELIRTLADCNDKVTALNWS 150 (860)
Q Consensus 130 ~~~~~~~~~~h~~~v~~l~~s 150 (860)
+......-...|.++-|+
T Consensus 97 ---l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 ---LVSFLFSVETDISKGIWD 114 (665)
T ss_pred ---eeccccccccchheeecc
Confidence 222222334556666665
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.49 E-value=0.1 Score=49.69 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=124.3
Q ss_pred eEEEEEeeCCCEEEEEeCCC--cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEE
Q 038577 394 VTALHFMANNHSLLSASLDG--TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLD 471 (860)
Q Consensus 394 v~~i~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~ 471 (860)
...+.|..++..+-+.|.-| .|+.+|+.+++..+....+...---.++.. +..+..-+...+...+||..+.+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence 45777878888888888777 699999999998888887776555555555 33455555555599999999999888
Q ss_pred EecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcc--c---CCCeEEEEEeeCCCEEEEEeCCCeEEEE
Q 038577 472 ILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFP--H---THDVLTVVYRPDGRQLACSTLDGQIHFW 546 (860)
Q Consensus 472 ~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~---~~~v~~~~~s~~~~~l~~~~~dg~i~iw 546 (860)
++. ..+.=..++ .|++.|+.......++++|..+.+....+.. . -..++-+.|- +|...|=.=....|...
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 876 345666777 4677777777777899999887765444332 1 2245667776 77777777677789999
Q ss_pred eCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEec
Q 038577 547 DPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGG 600 (860)
Q Consensus 547 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 600 (860)
|..+|+....+....-.... ...........-.+.+++.|..+.|...|
T Consensus 201 dp~tG~V~~~iDls~L~~~~-----~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 201 DPETGKVVGWIDLSGLRPEV-----GRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ETTT-BEEEEEE-HHHHHHH-----TSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEEEEEhhHhhhcc-----cccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 99999999988654321000 00000011134589999998776554443
No 386
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.49 E-value=4.5e-05 Score=78.38 Aligned_cols=195 Identities=15% Similarity=0.254 Sum_probs=125.0
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCcEEEEECCCCee--EEEeecCCCceEEEEEeeC-CCEEEEEe----CCCcEEEEEcc
Q 038577 351 DVNCLAYSPD--SQLLATGADDNKVKVWTVSSGFC--FVTFTEHTNAVTALHFMAN-NHSLLSAS----LDGTVRAWDLF 421 (860)
Q Consensus 351 ~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~i~~~~~-~~~l~s~~----~dg~i~~wd~~ 421 (860)
.+.|+++.-+ ...+++|..+|.|.+-..+...- .....++....++++|++- ...|++|- .|..+.+||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3566665443 34788899999999887764322 2334567788999999884 45555552 35579999998
Q ss_pred cc--cee--eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCc-eEEEecCcccCeEEEEEcC-CCCEEEEE
Q 038577 422 RY--RNF--RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGR-LLDILSGHEGPVHGLVFSP-TNATLASS 495 (860)
Q Consensus 422 ~~--~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~s~-~~~~l~s~ 495 (860)
+. .+. ..+.........++++..+.+.+.+|.... .+.++|++..- ....+ ....+..+...| .+.++++-
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr-~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR-SVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccc-hhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceecc
Confidence 76 221 122222223345788888888888888877 89999987321 11111 234566788888 77788876
Q ss_pred eCCCcEEEEE-ccCCcceeEEccc-----CCCeEEEEEeeCCC-EEEEEe-CCCeEEEEeCC
Q 038577 496 SWDKTVRLWN-VFEGKGSVESFPH-----THDVLTVVYRPDGR-QLACST-LDGQIHFWDPL 549 (860)
Q Consensus 496 ~~dg~i~iwd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~ 549 (860)
. ||.|.+|| ...-+.......+ ...+..++|.|-.. .+++.. ..++|+.||+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6 99999999 3333322222222 23489999999432 444444 45779999975
No 387
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.47 E-value=0.18 Score=52.26 Aligned_cols=295 Identities=10% Similarity=0.081 Sum_probs=151.2
Q ss_pred CCCEEEEEcCCCcEEEEEcccCe-----EEEEeecCCceeEEEECC-----CCCEEEEEeCCeEEEEeCCCCCcc---cc
Q 038577 63 DGTFLLTVDENQRCHFINLHCHV-----VLHRVRFKYPVNAILFSP-----NGKYIAVGTGKLVQIWRSPGFKKE---VF 129 (860)
Q Consensus 63 dg~~la~~~~d~~i~vwd~~~~~-----~~~~~~~~~~v~~~~fsp-----dg~~la~~~~~~i~iwd~~~~~~~---~~ 129 (860)
+...|++|+..|.++|++...+. .+-+.+.+.||..++.-+ +...||+-....+.||.+...... ..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 34689999999999999876433 455566788998887643 456888889999999998432211 00
Q ss_pred eeEEEEEeeccC--CCeEEEEEcC----C-CCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577 130 AFELIRTLADCN--DKVTALNWSP----D-SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK 202 (860)
Q Consensus 130 ~~~~~~~~~~h~--~~v~~l~~s~----d-~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 202 (860)
... +..+..|. .....++.-| . -.++.+-+.||.+.+++-+.. .-...+.+ ---.-.+.|.+...
T Consensus 116 ~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~------~f~~~lp~-~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 116 QYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF------AFSRFLPD-FLLPGPLCYCPRTD 187 (418)
T ss_pred EEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE------EEEEEcCC-CCCCcCeEEeecCC
Confidence 111 12222332 1222333322 2 256777899999999998765 22222222 22223467777777
Q ss_pred CCccceEEEEcCCccEEEeeecCCCCCCccccCCCC-CCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577 203 TDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSE-PPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV 281 (860)
Q Consensus 203 ~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 281 (860)
.+++++.+..+..|....-............ .........-...|.+.-... --.+..+.++.....+++
T Consensus 188 -----sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~----~l~i~v~~~~~~~~~Ivv 258 (418)
T PF14727_consen 188 -----SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQ----ALDIQVVRFSSSESDIVV 258 (418)
T ss_pred -----EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCce----eEEEEEEEcCCCCceEEE
Confidence 8999999999999876542211110000000 000001112223555432211 111222333222222332
Q ss_pred EEcCCeEEEEECCCceeEEEEeecCceeEEEEEee----CC--C-EEEEEEccCCcEEEEEccCceEEEEecCcccCeEE
Q 038577 282 GFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNE----LG--N-WLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNC 354 (860)
Q Consensus 282 ~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~----~~--~-~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~ 354 (860)
- ....+.+.+. +|......+....+.....+.. ++ + .+++++. ++.+.||.-.+-.... +....+| +
T Consensus 259 L-ger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~-t~~LlVy~d~~L~WsA--~l~~~PV-a 332 (418)
T PF14727_consen 259 L-GERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTH-TGTLLVYEDTTLVWSA--QLPHVPV-A 332 (418)
T ss_pred E-ecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEec-CCeEEEEeCCeEEEec--CCCCCCE-E
Confidence 2 2344555554 4444444444333333333322 22 2 2444444 4899988643332222 2222222 3
Q ss_pred EE---EcCCCCEEEEEeCCCcEEEEECCC
Q 038577 355 LA---YSPDSQLLATGADDNKVKVWTVSS 380 (860)
Q Consensus 355 ~~---~s~~~~~l~~~~~dg~i~iwd~~~ 380 (860)
+. |..-...|++-+.+|.+.+-=+.+
T Consensus 333 l~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 333 LSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred EEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 33 233344777778888887765544
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.46 E-value=0.093 Score=51.20 Aligned_cols=151 Identities=19% Similarity=0.093 Sum_probs=91.5
Q ss_pred CeeEEEEcCCCCEEEEEc---CCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE-eCCeEEEEe-CCCCCccc
Q 038577 54 NICRIAVSPDGTFLLTVD---ENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG-TGKLVQIWR-SPGFKKEV 128 (860)
Q Consensus 54 ~v~~va~spdg~~la~~~---~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~-~~~~i~iwd-~~~~~~~~ 128 (860)
.+.+.++|+||+.+|... ....+.++. .+...........+....|++++...++. .+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 789999999999888765 234455554 33333333244578899999998877776 445555553 3333321
Q ss_pred ceeEEEEEeeccCCCeEEEEEcCCCCeEEEee---cCCeEEEEeecccccC---cccccceEeecCCCcEEEEEEccCCC
Q 038577 129 FAFELIRTLADCNDKVTALNWSPDSNYLLVGS---KDLAVRLFYVKEKLKG---IHTNKPFLLLGHRDSVVGCFFSVDKK 202 (860)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~---~dg~v~vwd~~~~~~~---~~~~~~~~~~~h~~~i~~~~~~~~~~ 202 (860)
+ .......-.+.|..+++||||.++|... .++.|.+=-+.....+ ...............+..+.|.+++.
T Consensus 102 -~--~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 -P--VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred -e--EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 0 1111111122899999999999888765 3577777766544222 01111122223457889999999987
Q ss_pred CCccceEEEEcCC
Q 038577 203 TDKVNRIYTIARD 215 (860)
Q Consensus 203 ~~~~~~l~s~~~d 215 (860)
.++.+...
T Consensus 179 -----L~V~~~~~ 186 (253)
T PF10647_consen 179 -----LVVLGRSA 186 (253)
T ss_pred -----EEEEeCCC
Confidence 55555443
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.37 E-value=0.26 Score=51.66 Aligned_cols=163 Identities=13% Similarity=0.160 Sum_probs=99.2
Q ss_pred CCeEEEEEcCCCCeEE-Eee--cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccE
Q 038577 142 DKVTALNWSPDSNYLL-VGS--KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYM 218 (860)
Q Consensus 142 ~~v~~l~~s~d~~~l~-s~~--~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i 218 (860)
.++..++|. ||+.++ +.- .+|.+++ -.....|.-..|.++.|.|-+.. ....+++......|
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kf-------------Gds~viGqFEhV~GlsW~P~~~~-~~paLLAVQHkkhV 84 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKF-------------GDSKVIGQFEHVHGLSWAPPCTA-DTPALLAVQHKKHV 84 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCcccc-------------CCccEeeccceeeeeeecCcccC-CCCceEEEeccceE
Confidence 468899997 565444 321 2233322 22334455567889999987542 22367777888999
Q ss_pred EEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeecccc-CCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCce
Q 038577 219 FSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFS-QAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV 297 (860)
Q Consensus 219 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~ 297 (860)
.+|.+....... ..|-........ ..+---..+.|+|....|++-+....-.++++....
T Consensus 85 tVWqL~~s~~e~-------------------~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~ 145 (671)
T PF15390_consen 85 TVWQLCPSTTER-------------------NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS 145 (671)
T ss_pred EEEEeccCcccc-------------------ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC
Confidence 999987432200 122211111110 111123467899999999888877766667665333
Q ss_pred eEEEE-eecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccC
Q 038577 298 CIHLL-SISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRS 338 (860)
Q Consensus 298 ~~~~~-~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~ 338 (860)
..... -...+.|.|.+|.+||+.|+++-+..=.-++||-..
T Consensus 146 srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 146 SRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 22222 245578999999999999999887656677888544
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.082 Score=50.22 Aligned_cols=170 Identities=14% Similarity=0.173 Sum_probs=114.0
Q ss_pred CCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec--CCceeEEEECCCCCEEEEE-eCCeEEEEeCCCCCc
Q 038577 50 ESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF--KYPVNAILFSPNGKYIAVG-TGKLVQIWRSPGFKK 126 (860)
Q Consensus 50 ~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~--~~~v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~ 126 (860)
|-...+.+++|+|+.+.|.+....+.-.||=-.+|+.+++++. -.....|.+..+|+++++- .++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 5566699999999999999988888888888889999999983 3345678888888888777 778888887776532
Q ss_pred ccceeEEEEEee--cc-CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCC-------CcEEEEE
Q 038577 127 EVFAFELIRTLA--DC-NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHR-------DSVVGCF 196 (860)
Q Consensus 127 ~~~~~~~~~~~~--~h-~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~-------~~i~~~~ 196 (860)
..........+. .+ ....-.++|+|....|..+-+-.-+.|+.+...... ........+. ..+.++.
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~---l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS---LSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc---cccccccCcccccceEeeccccce
Confidence 221111111111 22 556789999999998988877777888877755211 1111112222 2356677
Q ss_pred EccCCCCCccceEEEEcCCccEEEeeecCC
Q 038577 197 FSVDKKTDKVNRIYTIARDCYMFSWGFSGN 226 (860)
Q Consensus 197 ~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~ 226 (860)
|.+.... .++-+.+++.+.-.+....
T Consensus 240 ~~~~~~~----LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 240 FNAITNS----LLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCc----EEEEecCCceEEEEecCCC
Confidence 7765442 5666666677776766653
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.26 E-value=0.24 Score=49.05 Aligned_cols=277 Identities=10% Similarity=0.058 Sum_probs=127.6
Q ss_pred CCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCce
Q 038577 188 HRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKV 267 (860)
Q Consensus 188 h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 267 (860)
-...+..+.|..+.. -+++ +..+.| +....+- ..|...............
T Consensus 15 t~~~l~dV~F~d~~~-----G~~V-G~~g~i--l~T~DGG----------------------~tW~~~~~~~~~~~~~~l 64 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNH-----GWAV-GAYGTI--LKTTDGG----------------------KTWQPVSLDLDNPFDYHL 64 (302)
T ss_dssp -SS-EEEEEESSSS------EEEE-ETTTEE--EEESSTT----------------------SS-EE-----S-----EE
T ss_pred CCCceEEEEEecCCE-----EEEE-ecCCEE--EEECCCC----------------------ccccccccCCCccceeeE
Confidence 345788999985444 4444 445543 3333322 256554422221222346
Q ss_pred EEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEee---cCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE
Q 038577 268 TACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSI---SREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK 344 (860)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~ 344 (860)
.++.|..+ +.+++ +..| +.+...+.++.-..+.. -......+....++...++ +.. |.|+.-.=....-...
T Consensus 65 ~~I~f~~~-~g~iv-G~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~-G~iy~T~DgG~tW~~~ 139 (302)
T PF14870_consen 65 NSISFDGN-EGWIV-GEPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELA-GDR-GAIYRTTDGGKTWQAV 139 (302)
T ss_dssp EEEEEETT-EEEEE-EETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT---EEEESSTTSSEEEE
T ss_pred EEEEecCC-ceEEE-cCCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCC-CcEEEeCCCCCCeeEc
Confidence 67777543 34444 4455 34444444443333321 1223334444444433333 332 5443322112223333
Q ss_pred ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEE-cccc
Q 038577 345 QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWD-LFRY 423 (860)
Q Consensus 345 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd-~~~~ 423 (860)
.....+.+..+.-+++|++++++.......-||.....-...-......|..|.|.|++...+ ....|.+++=+ ....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCc
Confidence 344556788899999999998887755566787543222223333568899999999986655 44888888876 2222
Q ss_pred ceeeE--eeC-CCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec---CcccCeEEEEEcCCCCEEEEEeC
Q 038577 424 RNFRT--FTT-PSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS---GHEGPVHGLVFSPTNATLASSSW 497 (860)
Q Consensus 424 ~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~ 497 (860)
..... .+. .....+..+++.+++...++|+... .+.....|+.=+..+ .-...+..+.|.++.+-++. +.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~---l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~ 294 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT---LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQ 294 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT----EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCcc---EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CC
Confidence 22222 111 2233478899999988888776542 344555555444332 23456888888866555554 46
Q ss_pred CCcEEEE
Q 038577 498 DKTVRLW 504 (860)
Q Consensus 498 dg~i~iw 504 (860)
+|.+--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7876554
No 392
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.23 E-value=0.032 Score=44.74 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=69.8
Q ss_pred eeEEEEcC---CC-CEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccce
Q 038577 55 ICRIAVSP---DG-TFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFA 130 (860)
Q Consensus 55 v~~va~sp---dg-~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~ 130 (860)
|+++++.. || +.|++|+.|..|++|+ ..+.+..+.....|++++-...+++.....+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R------ 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR------ 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce------
Confidence 66777764 33 5789999999999997 457888888889999999888765544448899999876432
Q ss_pred eEEEEEeeccCCCeEEEEEcC---CC-CeEEEeecCCeEE
Q 038577 131 FELIRTLADCNDKVTALNWSP---DS-NYLLVGSKDLAVR 166 (860)
Q Consensus 131 ~~~~~~~~~h~~~v~~l~~s~---d~-~~l~s~~~dg~v~ 166 (860)
+-+.+. +..+.++++.. || .-|++|-.+|.|-
T Consensus 74 ---lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 ---LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122222 22356665543 33 4688888888764
No 393
>PHA02713 hypothetical protein; Provisional
Probab=97.22 E-value=0.026 Score=62.22 Aligned_cols=219 Identities=10% Similarity=0.056 Sum_probs=108.2
Q ss_pred cEEEEEccCceEEEEecCcccC-eEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEE--EeecCCCceEEEEEe
Q 038577 330 QLLVWEWRSESYILKQQGHYFD-VNCLAYSPDSQLLATGADD------NKVKVWTVSSGFCFV--TFTEHTNAVTALHFM 400 (860)
Q Consensus 330 ~i~v~d~~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~ 400 (860)
.+..||..+++......-.... -.+++. -++..++.|+.+ ..+..||..++.-.. .+....... ++ ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-AV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-EE
Confidence 4566777666543221111111 112222 256677777753 347788877654221 111111111 22 22
Q ss_pred eCCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-------------------
Q 038577 401 ANNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS------------------- 456 (860)
Q Consensus 401 ~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------- 456 (860)
-+++..+.||.++ .+..||..+.+=...-..+....-.++ ..-+|+..++|+.++
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccE-EEECCEEEEEeCCCcccccccccccccccccccc
Confidence 3667778888764 377888876532211111211111112 223577777776542
Q ss_pred ---CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC------cEEEEEccC-Ccce--eEEcccCCCeEE
Q 038577 457 ---FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK------TVRLWNVFE-GKGS--VESFPHTHDVLT 524 (860)
Q Consensus 457 ---~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg------~i~iwd~~~-~~~~--~~~~~~~~~v~~ 524 (860)
..+..||..+.+....-.-.......-+..-+++..+.|+.++ .+..||..+ .+-. ............
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 2578888887654322211111111112223677777777542 367888876 3311 111111112222
Q ss_pred EEEeeCCCEEEEEeCCC--eEEEEeCCCCcee
Q 038577 525 VVYRPDGRQLACSTLDG--QIHFWDPLNGELM 554 (860)
Q Consensus 525 ~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~ 554 (860)
+++ +|++.++|+.+| .+..||+.+.+-.
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 222 788889999888 6788888776543
No 394
>PRK10115 protease 2; Provisional
Probab=97.21 E-value=0.63 Score=52.94 Aligned_cols=240 Identities=10% Similarity=0.076 Sum_probs=127.6
Q ss_pred eeEEEEEeeCCCEEEEEEccCC----cEEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 038577 308 KITTAVFNELGNWLVFGCAKLG----QLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGADD------NKVKVWT 377 (860)
Q Consensus 308 ~i~~~~~s~~~~~l~~~~~~~g----~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd 377 (860)
.+..+.++|||++++.+...+| .+++.|+.++..+....... -..++|++|++.|+....+ ..|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 5677889999999999876654 58888998875332221111 1468999999877665432 3677888
Q ss_pred CCCC--eeEEEeecCCCceE-EEEEeeCCCEEEEEeC---CCcEEEEEcc--ccceeeEeeCCCCCcEEEEEECCCCCEE
Q 038577 378 VSSG--FCFVTFTEHTNAVT-ALHFMANNHSLLSASL---DGTVRAWDLF--RYRNFRTFTTPSSRQFVSLASDQSGEVI 449 (860)
Q Consensus 378 ~~~~--~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~---dg~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l 449 (860)
+.++ +....+........ .+..+.++++++..+. ++.+.+++.. ++.....+....... ..+. ...+.+.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~ly 283 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLD-HYQHRFY 283 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCE-EEEE-eCCCEEE
Confidence 8877 33334443333333 3333447776664433 3568888843 333222233333222 2222 2233333
Q ss_pred EEEecCC--CeEEEEECC-CCceEEEecCcc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEccC-CcceeEEc-ccCCCeE
Q 038577 450 CAGTLDS--FEIFVWSMK-TGRLLDILSGHE-GPVHGLVFSPTNATLASSSWDKTVRLWNVFE-GKGSVESF-PHTHDVL 523 (860)
Q Consensus 450 ~~~~~~~--~~i~v~d~~-~~~~~~~~~~h~-~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~~v~ 523 (860)
+....+. ..|...++. .++....+.... ..|..+.++ .+.++++...+|.-+++-+.. +.....+. .....+.
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~ 362 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYVT 362 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceEe
Confidence 3333222 244444554 233333333323 367888887 345566666677666555432 22233222 2222333
Q ss_pred EEEEe--eCCC-EEEEEe---CCCeEEEEeCCCCc
Q 038577 524 TVVYR--PDGR-QLACST---LDGQIHFWDPLNGE 552 (860)
Q Consensus 524 ~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 552 (860)
.+.++ +++. ++++.+ .-+.+..+|+.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 363 WIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 34444 3443 444443 24678999988765
No 395
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0019 Score=67.02 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=78.9
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceE-EEEEeeCCCEEEEEeCCCcEEEEEccccceee
Q 038577 349 YFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVT-ALHFMANNHSLLSASLDGTVRAWDLFRYRNFR 427 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 427 (860)
...+..+.|+|.-..+|++..+|.+.+..++ ...+.++..|..+++ +++|.|||+.++.|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457789999999999999999999999988 778888887888887 99999999999999999999999999988777
Q ss_pred EeeCCCCCcEEEEEEC
Q 038577 428 TFTTPSSRQFVSLASD 443 (860)
Q Consensus 428 ~~~~~~~~~~~~~~~~ 443 (860)
.........+.++.|+
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 7544444455555555
No 396
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.17 E-value=0.04 Score=44.14 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=67.7
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeE
Q 038577 480 VHGLVFSP---TN-ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMY 555 (860)
Q Consensus 480 v~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 555 (860)
|+++++.. || ..|+.|+.|..||+|+-. + +.........|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e-~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--E-IVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--c-EEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56676654 32 579999999999999843 2 3444455667888877765 56888999999999975 44455
Q ss_pred EEecccccCCCccccccccccccCCCCcEEEEEEec-C--C-CEEEEecCCCeEE
Q 038577 556 TIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-D--G-SYILAGGSSKYIC 606 (860)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~--g-~~l~~~~~dg~v~ 606 (860)
.++..+. ++++++.. + | .-|++|-.+|.|-
T Consensus 76 RiKSK~~---------------------~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQ---------------------VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCC---------------------eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5554443 45555433 3 3 2688888888764
No 397
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.033 Score=56.94 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=104.6
Q ss_pred eCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-Ce-eEEE
Q 038577 316 ELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-------LLATGADDNKVKVWTVSS-GF-CFVT 386 (860)
Q Consensus 316 ~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iwd~~~-~~-~~~~ 386 (860)
.+.+.++..+.....++-.|++.|+.+..+..+.. |+-+.+.|+.+ .-+.|-.++.|.-||++- +. .+..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 44555666555557888999999999999887766 77778888653 234567788999999873 22 2222
Q ss_pred eecC----CCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577 387 FTEH----TNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW 462 (860)
Q Consensus 387 ~~~~----~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~ 462 (860)
..+| .....|.+-..+| ++++|+.+|.|++||- .++..++....-...|..+..+.+|+++++.+.. .+.+.
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t--yLlLi 497 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKT--YLLLI 497 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEeccc--EEEEE
Confidence 2222 2345566666666 8999999999999997 6666666666667789999999999999887765 67776
Q ss_pred ECC
Q 038577 463 SMK 465 (860)
Q Consensus 463 d~~ 465 (860)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 654
No 398
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.15 E-value=0.037 Score=60.88 Aligned_cols=217 Identities=12% Similarity=0.116 Sum_probs=114.5
Q ss_pred CcEEEEEccCceEEEEecC-cccCeEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEE--EeecCCCceEEEEE
Q 038577 329 GQLLVWEWRSESYILKQQG-HYFDVNCLAYSPDSQLLATGADD------NKVKVWTVSSGFCFV--TFTEHTNAVTALHF 399 (860)
Q Consensus 329 g~i~v~d~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~i~~ 399 (860)
..+..||..++.......- ....-.+++.. ++...++|+.| .++..||..+++-.. .+........ ++
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~- 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA- 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-
Confidence 4577888887754433221 22223334443 55788888888 357788877655222 1111111111 11
Q ss_pred eeCCCEEEEEeCCCc-----EEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC-----eEEEEECCCCce
Q 038577 400 MANNHSLLSASLDGT-----VRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF-----EIFVWSMKTGRL 469 (860)
Q Consensus 400 ~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~i~v~d~~~~~~ 469 (860)
.-+|...++||.||. +..||..+.+-...-.... .....-...-+|...++|+.++. .+..||..+.+.
T Consensus 378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 226778889998874 6667765543222111111 12223333456777777775542 578888887654
Q ss_pred EEE--ecCcccCeEEEEEcCCCCEEEEEeCCCc-----EEEEEccCCcceeEEcccCCCeEEEEE-eeCCCEEEEEeCCC
Q 038577 470 LDI--LSGHEGPVHGLVFSPTNATLASSSWDKT-----VRLWNVFEGKGSVESFPHTHDVLTVVY-RPDGRQLACSTLDG 541 (860)
Q Consensus 470 ~~~--~~~h~~~v~~l~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg 541 (860)
... +........ ++ .-++.+.+.|+.|+. |..||..+.+-... ..-..+...+.. .-++...++|+.||
T Consensus 457 ~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~g~~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 457 TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAVGVVVLGGKLYAVGGFDG 533 (571)
T ss_pred eecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccccEEEECCEEEEEecccC
Confidence 322 221111122 22 226778888887763 77788877652222 111112222211 22667778888776
Q ss_pred e-----EEEEeCCCCc
Q 038577 542 Q-----IHFWDPLNGE 552 (860)
Q Consensus 542 ~-----i~iwd~~~~~ 552 (860)
. |..||..+.+
T Consensus 534 ~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 534 NNNLNTVECYDPETDT 549 (571)
T ss_pred ccccceeEEcCCCCCc
Confidence 3 7777766554
No 399
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.14 E-value=0.0012 Score=42.23 Aligned_cols=39 Identities=51% Similarity=0.897 Sum_probs=34.1
Q ss_pred CceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 467 GRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 467 ~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345566777899999999999999999999999999996
No 400
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.12 E-value=0.0016 Score=41.56 Aligned_cols=37 Identities=35% Similarity=0.600 Sum_probs=33.4
Q ss_pred EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEe
Q 038577 133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFY 169 (860)
Q Consensus 133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd 169 (860)
+...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4566778999999999999999999999999999996
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.09 E-value=0.2 Score=45.64 Aligned_cols=133 Identities=8% Similarity=0.040 Sum_probs=86.4
Q ss_pred eEEEEecCCCCEEEEEEc-C---------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEE-
Q 038577 267 VTACDYHRGLDMVVVGFS-N---------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWE- 335 (860)
Q Consensus 267 v~~~~~~~~~~~l~~~~~-~---------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d- 335 (860)
...-..+|+|++.+ |.. + |.++.|-.. ..+..+...-.--..++|+.+.+.+....+.+-.|.-||
T Consensus 111 ~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccCccCCCCceee-eeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 34445678888733 332 1 444444431 112222222233467889988888888877767787787
Q ss_pred -ccCce-----EEEEecC----cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeC
Q 038577 336 -WRSES-----YILKQQG----HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMAN 402 (860)
Q Consensus 336 -~~~~~-----~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~ 402 (860)
..+|. .+..++. .....-.+++..+|++.++.-..++|...|..+|+.+.++.-....|++++|-..
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 44543 2332221 1112334566778888888888999999999999999999988999999999643
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.06 E-value=0.46 Score=48.62 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=60.0
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeE---EEEee-----cCCceeEEEECCC----CCEEEEEe-C-------
Q 038577 54 NICRIAVSPDGTFLLTVDENQRCHFINLHCHVV---LHRVR-----FKYPVNAILFSPN----GKYIAVGT-G------- 113 (860)
Q Consensus 54 ~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~---~~~~~-----~~~~v~~~~fspd----g~~la~~~-~------- 113 (860)
..++|+|.|||+++++ ...|.|.+++ ..+.. +..+. .......++|+|+ +.+.++.. .
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4679999999987665 5589999999 44443 33331 3456789999994 43333332 1
Q ss_pred -CeEEEEeCCCCCcccce-eEEEEEeec---cCCCeEEEEEcCCCCeEEEeecCC
Q 038577 114 -KLVQIWRSPGFKKEVFA-FELIRTLAD---CNDKVTALNWSPDSNYLLVGSKDL 163 (860)
Q Consensus 114 -~~i~iwd~~~~~~~~~~-~~~~~~~~~---h~~~v~~l~~s~d~~~l~s~~~dg 163 (860)
..|.-|....+...... ..++..+.. ....-..|+|.|||.+.++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 24555555444222211 222333333 233456799999997766665544
No 403
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.05 E-value=0.00088 Score=60.39 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=72.6
Q ss_pred CCCEEEEEeCCCcEEEEEcccccee-eEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcc-cC
Q 038577 402 NNHSLLSASLDGTVRAWDLFRYRNF-RTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHE-GP 479 (860)
Q Consensus 402 ~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~-~~ 479 (860)
-+..+++|+.+|.|.+|...-.... ..+..........+....++.+.++++.++ .|+.|++...+.+.....|. .+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg-~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDG-RIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCC-ceeeeccccCceeeeeccccCCC
Confidence 3567999999999999987632211 111122222223344455667888899898 99999999999888887777 56
Q ss_pred eEEEEEcCCCCEEEEE--eCCCcEEEEEccCC
Q 038577 480 VHGLVFSPTNATLASS--SWDKTVRLWNVFEG 509 (860)
Q Consensus 480 v~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~ 509 (860)
+.....+..++.++.+ |.|..++.|++..-
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 6666666666677766 67777777776543
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.04 E-value=0.064 Score=59.04 Aligned_cols=231 Identities=12% Similarity=0.116 Sum_probs=121.9
Q ss_pred CCCCEEEEEeCCC------cEEEEECCCCeeEE--EeecCCCceEEEEEeeCCCEEEEEeCC-C-----cEEEEEccccc
Q 038577 359 PDSQLLATGADDN------KVKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSASLD-G-----TVRAWDLFRYR 424 (860)
Q Consensus 359 ~~~~~l~~~~~dg------~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~d-g-----~i~~wd~~~~~ 424 (860)
..+..++.|+.++ .+..||..++.-.. .+. ....-.+++.. ++...++||.| | .+..||..+.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3455677777763 57788887763322 222 22223344443 45678889888 3 46778877665
Q ss_pred eeeEeeCCCCCcEEEEEECCCCCEEEEEecCCC----eEEEEECCCCceEEE--ecCcccCeEEEEEcCCCCEEEEEeCC
Q 038577 425 NFRTFTTPSSRQFVSLASDQSGEVICAGTLDSF----EIFVWSMKTGRLLDI--LSGHEGPVHGLVFSPTNATLASSSWD 498 (860)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~i~v~d~~~~~~~~~--~~~h~~~v~~l~~s~~~~~l~s~~~d 498 (860)
=.. ...-.......-...-+|...++|+.++. .+..||..+.+.... +...........+ +|...++||.+
T Consensus 361 W~~-~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~ 437 (571)
T KOG4441|consen 361 WTP-VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGD 437 (571)
T ss_pred eec-cCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcC
Confidence 222 22111122222233346777888888752 578888876554322 2211112222222 68888888865
Q ss_pred C------cEEEEEccCCcceeEEccc-CCCeEEEEEeeCCCEEEEEeCCCe-----EEEEeCCCCceeEEEecccccCCC
Q 038577 499 K------TVRLWNVFEGKGSVESFPH-THDVLTVVYRPDGRQLACSTLDGQ-----IHFWDPLNGELMYTIEGRRDISGG 566 (860)
Q Consensus 499 g------~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~ 566 (860)
+ .+..||..++.-.....-. ...-..+ -.-++.+.++|+.|+. |..||..+.+-...-.....
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---- 512 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGV-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---- 512 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccceE-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc----
Confidence 4 4678887766422111111 1111112 2237788888887763 77788877654433211111
Q ss_pred ccccccccccccCCCCcEEEEEEecCCCEEEEecCCC-----eEEEEECCCceE
Q 038577 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK-----YICMYDVADQVL 615 (860)
Q Consensus 567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-----~v~vwd~~~~~~ 615 (860)
.-..-+..-+++..++|+.|| +|..||..+.+.
T Consensus 513 ----------------rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 513 ----------------RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred ----------------cccccEEEECCEEEEEecccCccccceeEEcCCCCCce
Confidence 011111223566777777765 566676666543
No 405
>PRK10115 protease 2; Provisional
Probab=97.01 E-value=0.96 Score=51.48 Aligned_cols=239 Identities=8% Similarity=-0.042 Sum_probs=122.7
Q ss_pred ceEEEEecCCCCEEEEEEcC-----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC-----CcEEEEE
Q 038577 266 KVTACDYHRGLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL-----GQLLVWE 335 (860)
Q Consensus 266 ~v~~~~~~~~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~-----g~i~v~d 335 (860)
.+..+.++|++++|+.+... -.+++.|+.++..+...-... . ..++|++|++.++.+..++ ..++.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46778899999998865443 468888988775332211111 1 4699999999888876542 3677788
Q ss_pred ccCc--eEEEEecCcccCeE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577 336 WRSE--SYILKQQGHYFDVN-CLAYSPDSQLLATGAD---DNKVKVWTVS--SGFCFVTFTEHTNAVTALHFMANNHSLL 407 (860)
Q Consensus 336 ~~~~--~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---dg~i~iwd~~--~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 407 (860)
+.++ +....+........ ....+.++++++..+. ++.+.+++.. ++.....+.........+. ...+..++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8777 32223332222222 3334557877665444 3578888843 3332222222222222222 22233333
Q ss_pred EEeCC---CcEEEEEccccceeeEeeCC-CCCcEEEEEECCCCCEEEEEecCCC--eEEEEECCCCceEEEec-CcccCe
Q 038577 408 SASLD---GTVRAWDLFRYRNFRTFTTP-SSRQFVSLASDQSGEVICAGTLDSF--EIFVWSMKTGRLLDILS-GHEGPV 480 (860)
Q Consensus 408 s~~~d---g~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~--~i~v~d~~~~~~~~~~~-~h~~~v 480 (860)
....+ ..|...++........+..+ ....+..+.+. ++.++....+++ .+++++..+++ +..+. .....+
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~ 361 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYV 361 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceE
Confidence 22221 23444444422223344444 23466777776 445555444333 45555654333 33333 222223
Q ss_pred EEEEEc--CCCC-EEEEEeC---CCcEEEEEccCCc
Q 038577 481 HGLVFS--PTNA-TLASSSW---DKTVRLWNVFEGK 510 (860)
Q Consensus 481 ~~l~~s--~~~~-~l~s~~~---dg~i~iwd~~~~~ 510 (860)
..+.++ +++. ++++.+. -+.+..+|..+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 333444 3433 4444433 3678888887764
No 406
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.0012 Score=59.50 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=77.9
Q ss_pred EEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCC-CceEEEecCcccCeEE-
Q 038577 405 SLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKT-GRLLDILSGHEGPVHG- 482 (860)
Q Consensus 405 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~-~~~~~~~~~h~~~v~~- 482 (860)
.+..-+.||.|+-++++..+....-..... .....-.-+..+++|+.++ .|++|+... +.....+..-...|.+
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~---e~~~v~~~~~~~~vG~~dg-~v~~~n~n~~g~~~d~~~s~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFID---EGQRVVTASAKLMVGTSDG-AVYVFNWNLEGAHSDRVCSGEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhh---cceeecccCceEEeecccc-eEEEecCCccchHHHhhhcccccceec
Confidence 345566788888887765432211111110 0122334456788898888 999998762 1211111111222322
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC-CCeEEEEEeeCCCEEEEE--eCCCeEEEEeCC
Q 038577 483 LVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT-HDVLTVVYRPDGRQLACS--TLDGQIHFWDPL 549 (860)
Q Consensus 483 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~ 549 (860)
+.--.++.+..+++.||.|+.|++...+.......|. .+......+..++.++++ +.|..++.|++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 2222345678899999999999998887655555565 344444444444444444 445555555543
No 407
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0072 Score=66.92 Aligned_cols=108 Identities=24% Similarity=0.376 Sum_probs=78.3
Q ss_pred EEEEEeeCCCEEEEEEccCCcEEEEEccCceE-EEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee
Q 038577 310 TTAVFNELGNWLVFGCAKLGQLLVWEWRSESY-ILKQQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT 388 (860)
Q Consensus 310 ~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 388 (860)
..++..-.+.+++++++. |.+...|+...-. ...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+.
T Consensus 91 ~v~s~a~~~~~ivi~Ts~-ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSH-GHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred ceeeeeeeeeeEEEEcCc-hhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 333333445566666655 8888888766421 11112346789999999999999999999999999999999999998
Q ss_pred cCCCceEEEEE---eeCCCEEEEEeCCCcEEEEEc
Q 038577 389 EHTNAVTALHF---MANNHSLLSASLDGTVRAWDL 420 (860)
Q Consensus 389 ~~~~~v~~i~~---~~~~~~l~s~~~dg~i~~wd~ 420 (860)
.|..+.+++-+ ..++..++++...|. +|.+
T Consensus 170 e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 170 EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 88887776654 345556788877776 5554
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.91 E-value=0.41 Score=54.40 Aligned_cols=205 Identities=14% Similarity=0.119 Sum_probs=121.8
Q ss_pred CCEEEEEeCCCcEEEEEccccceeeEeeCCCCCc-------EEEEEE----------------CCCCCEEEEEecCCCeE
Q 038577 403 NHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQ-------FVSLAS----------------DQSGEVICAGTLDSFEI 459 (860)
Q Consensus 403 ~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~-------~~~~~~----------------~~~~~~l~~~~~~~~~i 459 (860)
+..++.++.++.|.-.|..+++.+..+....... ...+++ ..++..++.++.|+ .+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg-~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA-RL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC-eE
Confidence 3466677777888888888888777765433211 111221 12445788888888 99
Q ss_pred EEEECCCCceEEEecCcccCeE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEEccCCcceeE
Q 038577 460 FVWSMKTGRLLDILSGHEGPVH-------------GLVFSP--TNATLASSSW----------DKTVRLWNVFEGKGSVE 514 (860)
Q Consensus 460 ~v~d~~~~~~~~~~~~h~~~v~-------------~l~~s~--~~~~l~s~~~----------dg~i~iwd~~~~~~~~~ 514 (860)
.-.|.++|+.+..+. ..+.|. .+.-+| .+..++.++. +|.|+-+|..+++..-.
T Consensus 273 iALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999987764 222221 111222 1345555542 68899999999986655
Q ss_pred Eccc---------CC--------Ce-EEEEEeeCCCEEEEEe------------------CCCeEEEEeCCCCceeEEEe
Q 038577 515 SFPH---------TH--------DV-LTVVYRPDGRQLACST------------------LDGQIHFWDPLNGELMYTIE 558 (860)
Q Consensus 515 ~~~~---------~~--------~v-~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~ 558 (860)
+... .+ .+ ...+++|+..+++.+. ..+.|.-.|++||+....++
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 4310 00 11 2344555444444422 13457777888888888776
Q ss_pred c-ccccCCCccccccccccccCCCCcEEEEEEec-CCC---EEEEecCCCeEEEEECCCceEEEEEee
Q 038577 559 G-RRDISGGRLMTDRRSAANSSSGKCFTTLCYSA-DGS---YILAGGSSKYICMYDVADQVLLRRFQI 621 (860)
Q Consensus 559 ~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~---~l~~~~~dg~v~vwd~~~~~~~~~~~~ 621 (860)
. |++.=.... .....-+.+.. +|+ .++.++.+|.+.+.|-++|+.+...+.
T Consensus 432 ~~~hD~WD~D~------------~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 432 TVHHDLWDMDV------------PAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ccCCccccccc------------cCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 5 433210000 00112222333 664 788999999999999999999876543
No 409
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.13 Score=52.87 Aligned_cols=145 Identities=15% Similarity=0.179 Sum_probs=102.3
Q ss_pred CCCEEE-EEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCC--------EEEEEeCCeEEEEeCCCCCcccceeEE
Q 038577 63 DGTFLL-TVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGK--------YIAVGTGKLVQIWRSPGFKKEVFAFEL 133 (860)
Q Consensus 63 dg~~la-~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~--------~la~~~~~~i~iwd~~~~~~~~~~~~~ 133 (860)
+..+|. ++.....++-.|++.|+.+...+....|+-+.+.|+.+ .|+...++.|.-||+.-.... .
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-----k 418 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-----K 418 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----e
Confidence 334443 34445678888999999999999777799999999763 233338899999998744321 1
Q ss_pred EEEeecc----CCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceE
Q 038577 134 IRTLADC----NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRI 209 (860)
Q Consensus 134 ~~~~~~h----~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l 209 (860)
+..-.+| .....|.+-..+| ++|+|+.+|.||+||--.. .....+++-..+|..+..+.+|+ .|
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~------~AKTAlPgLG~~I~hVdvtadGK-----wi 486 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR------RAKTALPGLGDAIKHVDVTADGK-----WI 486 (644)
T ss_pred eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh------hhhhcccccCCceeeEEeeccCc-----EE
Confidence 2222223 2335666666555 7999999999999998444 45677889999999999999998 66
Q ss_pred EEEcCCccEEEeeecC
Q 038577 210 YTIARDCYMFSWGFSG 225 (860)
Q Consensus 210 ~s~~~dg~i~~w~~~~ 225 (860)
+..+ +.++.+.++.-
T Consensus 487 l~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 487 LATC-KTYLLLIDTLI 501 (644)
T ss_pred EEec-ccEEEEEEEec
Confidence 6555 55666666553
No 410
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.85 E-value=0.82 Score=48.17 Aligned_cols=118 Identities=15% Similarity=0.237 Sum_probs=74.3
Q ss_pred CCccCeeEEEEcCCC----CEEEEEcCCCcEEEEEcc-----cCeEEEE----eecCCc--eeEEEECCCCCEEEEEeCC
Q 038577 50 ESSSNICRIAVSPDG----TFLLTVDENQRCHFINLH-----CHVVLHR----VRFKYP--VNAILFSPNGKYIAVGTGK 114 (860)
Q Consensus 50 ~h~~~v~~va~spdg----~~la~~~~d~~i~vwd~~-----~~~~~~~----~~~~~~--v~~~~fspdg~~la~~~~~ 114 (860)
|.-..|..++|+|-+ ..|........|.||.+. +++.+.. ++...+ -..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 444568899999853 244445667899999875 2333322 211222 3578899999999998655
Q ss_pred eEEE-EeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee-cCCeEEEEeeccc
Q 038577 115 LVQI-WRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS-KDLAVRLFYVKEK 173 (860)
Q Consensus 115 ~i~i-wd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~-~dg~v~vwd~~~~ 173 (860)
.+.| +++...... ....+ .-.+.|.|.+|.+||++|+.+- ..=.-++||-...
T Consensus 134 dvSV~~sV~~d~sr-----VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 134 DVSVLPSVHCDSSR-----VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred ceeEeeeeeeCCce-----EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 5544 444433210 22333 4567899999999999887763 3345677875543
No 411
>PHA02713 hypothetical protein; Provisional
Probab=96.80 E-value=0.084 Score=58.34 Aligned_cols=219 Identities=9% Similarity=0.061 Sum_probs=108.3
Q ss_pred eEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-----CCcEEEEEccCceEEEEecCcccCeEEEEEcCCC
Q 038577 287 VFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-----LGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDS 361 (860)
Q Consensus 287 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-----~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~ 361 (860)
.+..||..+.+-...-.............-++...++|+.. ...+..||..++.......-....-......-+|
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 46677776654332212111111222233455555555532 1347788887775432211111111111222367
Q ss_pred CEEEEEeCCC-----cEEEEECCCCeeEE--EeecCCCceEEEEEeeCCCEEEEEeCCC---------------------
Q 038577 362 QLLATGADDN-----KVKVWTVSSGFCFV--TFTEHTNAVTALHFMANNHSLLSASLDG--------------------- 413 (860)
Q Consensus 362 ~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg--------------------- 413 (860)
+..+.|+.++ .+..||..+..-.. .+.........+ .-+++..+.||.++
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccc
Confidence 7778888754 47889987653221 111111111112 23677777777653
Q ss_pred --cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECCC-Cce--EEEecCcccCeEEE
Q 038577 414 --TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMKT-GRL--LDILSGHEGPVHGL 483 (860)
Q Consensus 414 --~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~-~~~--~~~~~~h~~~v~~l 483 (860)
.+..||..+.+=...-..+.. .....+..-+++..++|+.++ ..+..||..+ .+. +..+..........
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~ 509 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTG-TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI 509 (557)
T ss_pred cceEEEECCCCCeEeecCCCCcc-cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE
Confidence 366777765432211111111 111222233466666666532 1467899887 443 33343333333333
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEEccCCc
Q 038577 484 VFSPTNATLASSSWDK--TVRLWNVFEGK 510 (860)
Q Consensus 484 ~~s~~~~~l~s~~~dg--~i~iwd~~~~~ 510 (860)
.+ +++..++|+.+| .+..||..+.+
T Consensus 510 ~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 510 LH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EE--CCEEEEEeeecceeehhhcCccccc
Confidence 33 788899999888 67777777665
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.50 E-value=1 Score=44.73 Aligned_cols=278 Identities=12% Similarity=0.109 Sum_probs=130.9
Q ss_pred cCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeecc-CCCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577 92 FKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADC-NDKVTALNWSPDSNYLLVGSKDLAVRLFYV 170 (860)
Q Consensus 92 ~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~ 170 (860)
...++.+|+|..+..-.|+|..+.| +....+...+.+.. ...... .-...++.|..+ ..+++ +..+ +.+...
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~--~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~ 87 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVS--LDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTT 87 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-------S-----EEEEEEEETT-EEEEE-EETT-EEEEES
T ss_pred CCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccc--cCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEec
Confidence 4678999999977788888877654 44444333322211 011110 123567777643 34444 4444 333333
Q ss_pred cccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceee
Q 038577 171 KEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVK 250 (860)
Q Consensus 171 ~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (860)
+.+..- .....-..-.+....+....++. ....+..|.| |....+- +
T Consensus 88 DgG~tW---~~v~l~~~lpgs~~~i~~l~~~~------~~l~~~~G~i--y~T~DgG----------------------~ 134 (302)
T PF14870_consen 88 DGGKTW---ERVPLSSKLPGSPFGITALGDGS------AELAGDRGAI--YRTTDGG----------------------K 134 (302)
T ss_dssp STTSS----EE----TT-SS-EEEEEEEETTE------EEEEETT--E--EEESSTT----------------------S
T ss_pred CCCCCc---EEeecCCCCCCCeeEEEEcCCCc------EEEEcCCCcE--EEeCCCC----------------------C
Confidence 333111 11111011123334444444443 3333444443 3333322 2
Q ss_pred eEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCc
Q 038577 251 KWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQ 330 (860)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~ 330 (860)
.|..... ...+.+..+..+++|.+++++.....+.-|+.....-...-+.....+..+.|.|++...+++ ..|.
T Consensus 135 tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~--~Gg~ 208 (302)
T PF14870_consen 135 TWQAVVS----ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA--RGGQ 208 (302)
T ss_dssp SEEEEE-----S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE--TTTE
T ss_pred CeeEccc----CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe--CCcE
Confidence 6754432 334678889999999988888776666677764333333334456799999999998877755 3378
Q ss_pred EEEEEccC-ceEEEE--ec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEee---cCCCceEEEEEeeC
Q 038577 331 LLVWEWRS-ESYILK--QQ--GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFT---EHTNAVTALHFMAN 402 (860)
Q Consensus 331 i~v~d~~~-~~~~~~--~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~i~~~~~ 402 (860)
++.=+... ...-.. .. ...-.+..++|.+++...++|+. |.+ +...+.|+.-.... .-...+..+.|.++
T Consensus 209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 88777222 222111 11 12234789999999887777665 444 34445555544433 23456888888766
Q ss_pred CCEEEEEeCCCcEEEE
Q 038577 403 NHSLLSASLDGTVRAW 418 (860)
Q Consensus 403 ~~~l~s~~~dg~i~~w 418 (860)
. .-...+.+|.+--|
T Consensus 287 ~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 287 D-KGFVLGQDGVLLRY 301 (302)
T ss_dssp T-EEEEE-STTEEEEE
T ss_pred C-ceEEECCCcEEEEe
Confidence 5 44455577776544
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=96.49 E-value=1.2 Score=45.56 Aligned_cols=150 Identities=13% Similarity=0.166 Sum_probs=86.0
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEE-ECCCCeeEEEe-ecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccccee
Q 038577 349 YFDVNCLAYSPDSQLLATGADDNKVKVW-TVSSGFCFVTF-TEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNF 426 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~-~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 426 (860)
...+.++.+.|++.+++++.. |.+..- + ..++.-... ..-...++++.+.++++.++. +..|.+.+=....+...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence 456888999999876666544 554432 2 222222222 233467889999998876555 45676643233444433
Q ss_pred eEeeCC---CCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec---CcccCeEEEEEcCCCCEEEEEeCCCc
Q 038577 427 RTFTTP---SSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS---GHEGPVHGLVFSPTNATLASSSWDKT 500 (860)
Q Consensus 427 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~---~h~~~v~~l~~s~~~~~l~s~~~dg~ 500 (860)
.....+ ....+..+.+.+++..++++. ++ .+. .....|+.-.... .-......+.|..+++.+++ +..|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~-~G-~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGG-NG-TLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGV 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcC-CC-eEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCce
Confidence 333322 223567888999888766654 44 343 3444444433332 22235778888777766554 55787
Q ss_pred EEEEE
Q 038577 501 VRLWN 505 (860)
Q Consensus 501 i~iwd 505 (860)
|-.|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 77765
No 414
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.86 Score=43.41 Aligned_cols=271 Identities=8% Similarity=-0.037 Sum_probs=147.8
Q ss_pred ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecC--cccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCC---
Q 038577 307 EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQG--HYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSG--- 381 (860)
Q Consensus 307 ~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--- 381 (860)
+-+..+.++. ++...+. .+.-+++.|+.+......... ..+--.++.. .|++..++..|.-..+.|+.+.
T Consensus 87 ~l~~Dv~vse--~yvyvad-~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 87 DLFADVRVSE--EYVYVAD-WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhheeEecc--cEEEEEc-CCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence 3455555553 3444443 347799999877544333211 1122334444 5778888886667778887654
Q ss_pred eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC-CcEEEEEECCCCCEEEEEecCCCeEE
Q 038577 382 FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS-RQFVSLASDQSGEVICAGTLDSFEIF 460 (860)
Q Consensus 382 ~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~i~ 460 (860)
............-+.++.+ |++-..+..|+-+.+-|+........+..-.. ..+.++..+++..+++.... -+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e---gvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE---GVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc---ceE
Confidence 3344444445555677776 55777788899999999977554433332222 25677777777666665543 477
Q ss_pred EEECCCCceEEEec--CcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE--cccCC-CeEEEEEeeCCCEEE
Q 038577 461 VWSMKTGRLLDILS--GHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES--FPHTH-DVLTVVYRPDGRQLA 535 (860)
Q Consensus 461 v~d~~~~~~~~~~~--~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~-~v~~~~~s~~~~~l~ 535 (860)
+-|..+.+....+. ....++.--.+.-.+++...+..+.-+.+-|+.+....... ....+ ....+.. -+.++.
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~a--y~~y~y 314 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNY 314 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEE--ecCeeE
Confidence 77777655333332 12222222123334666666677777777787655422111 11111 2223332 234455
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEEC
Q 038577 536 CSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDV 610 (860)
Q Consensus 536 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~ 610 (860)
.+..+ ...+-+....+......+... .+.+.+.+-+.+.+.+...++.+.+|+.
T Consensus 315 iadkn-~g~vV~~s~~s~m~~~~g~~t--------------------i~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 315 IADKN-TGAVVDASPPSMMDKRPGRPT--------------------IGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred eccCC-ceEEEeCCChhhcccccCcce--------------------EeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 55444 344444443333222222221 2445555556677888888888888875
No 415
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.43 E-value=0.92 Score=43.38 Aligned_cols=194 Identities=10% Similarity=0.073 Sum_probs=118.6
Q ss_pred eeEEEEeecCce-eEEEEEeeCCCEEEEEEcc-CCcEEEEEccCceEEEEecCc-ccCeEEEEEcCCCCEEEEEeCCCcE
Q 038577 297 VCIHLLSISREK-ITTAVFNELGNWLVFGCAK-LGQLLVWEWRSESYILKQQGH-YFDVNCLAYSPDSQLLATGADDNKV 373 (860)
Q Consensus 297 ~~~~~~~~~~~~-i~~~~~s~~~~~l~~~~~~-~g~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i 373 (860)
+.+..++..... ...+.|..+|..+-+++.. ...|+.+|+.+++......-. ..--..++.. +++.....-.++..
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~ 112 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeE
Confidence 334445444433 4466776777766666544 237899999999876654322 1122344444 33455556778999
Q ss_pred EEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCC----CcEEEEEECCCCCEE
Q 038577 374 KVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSS----RQFVSLASDQSGEVI 449 (860)
Q Consensus 374 ~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l 449 (860)
.+||..+.+.+.++.- .+.=+.++ .++..|+.......+.++|..+.+..+.+..... ..+..+.+- +|...
T Consensus 113 f~yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 9999999999888853 45667777 5677777777778999999988887776654422 134445554 45554
Q ss_pred EEEecCCCeEEEEECCCCceEEEecC------------c---ccCeEEEEEcCCCCEEEEEe
Q 038577 450 CAGTLDSFEIFVWSMKTGRLLDILSG------------H---EGPVHGLVFSPTNATLASSS 496 (860)
Q Consensus 450 ~~~~~~~~~i~v~d~~~~~~~~~~~~------------h---~~~v~~l~~s~~~~~l~s~~ 496 (860)
|-.-... .|...|..+|+.+..+.- + ..-.+.||+.|....+...+
T Consensus 189 ANVW~td-~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTD-RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSS-EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCC-eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 4444444 899999999999877631 1 24578999998766655444
No 416
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.36 Score=43.33 Aligned_cols=185 Identities=17% Similarity=0.129 Sum_probs=111.8
Q ss_pred CCCEEEEEeCCC--cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccC
Q 038577 402 NNHSLLSASLDG--TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGP 479 (860)
Q Consensus 402 ~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~ 479 (860)
++.++.+.|.-| .|++||+.+++.+.....+. ..+..--...-|..+..-....+.-+.||.++-+.+..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCc
Confidence 456666666544 69999999998877666552 2333333334455555555544488899998888776654 3444
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc--ccC---CCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577 480 VHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF--PHT---HDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM 554 (860)
Q Consensus 480 v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 554 (860)
=+.++. |++.|+.++...+++.-|..+-....... ... ..++-+.|- ||...|-.-.+..|...|.++|+.+
T Consensus 133 GWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 133 GWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred ceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEE
Confidence 455554 66667777666677777765544322222 112 223445554 7777777666777888899999988
Q ss_pred EEEecccccCCCccccccccccccCCCCcEEEEEEecCC-CEEEEe
Q 038577 555 YTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG-SYILAG 599 (860)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~ 599 (860)
..++...-... ......+..-.+.+++.|++ +++++|
T Consensus 210 ~widlS~L~~~--------~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKE--------LNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchh--------cCccccccccccceeecCcCCeEEEec
Confidence 88765432100 00011112346889999988 555655
No 417
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.018 Score=64.04 Aligned_cols=105 Identities=14% Similarity=0.186 Sum_probs=78.8
Q ss_pred CCCEEEEEeCCCcEEEEEccCCcc-eeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCC
Q 038577 488 TNATLASSSWDKTVRLWNVFEGKG-SVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGG 566 (860)
Q Consensus 488 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 566 (860)
.+.+++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-.+|.|.+||...++.++.+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap--- 174 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP--- 174 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc---
Confidence 466788999999999988866421 1222246789999999999999999999999999999999998888765432
Q ss_pred ccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEECC
Q 038577 567 RLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 567 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
...+-.+.+..++..++++...|. +|.+.
T Consensus 175 --------------~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 --------------VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred --------------cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 123555556666677888877775 56543
No 418
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=96.25 E-value=0.39 Score=49.92 Aligned_cols=149 Identities=9% Similarity=0.084 Sum_probs=91.3
Q ss_pred cccCCc--EEEe-CCCEEEeeeCCeEEE-EECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCe--
Q 038577 12 PYRGGN--AVLS-QNTKLISPVGNRVSV-TDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHV-- 85 (860)
Q Consensus 12 ~~~~~~--~~~s-dg~~l~~~~~~~i~v-~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~-- 85 (860)
.|.++. +..+ ||++++++..+.+.. ||--...-..........++++.+.++|..++++ ..|. .+|....++
T Consensus 236 ~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~~~ 313 (398)
T PLN00033 236 YYTGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGLTE 313 (398)
T ss_pred eeccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCCcc
Confidence 444442 3445 999999998776443 4332211133333456678999999999977765 4454 445555554
Q ss_pred ---EEEEeec---CCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577 86 ---VLHRVRF---KYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159 (860)
Q Consensus 86 ---~~~~~~~---~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 159 (860)
....... ...+.++.|.+++..+++|..|.+.... ..++ .|+....-..-......+.|.++++.+++
T Consensus 314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~----tW~~~~~~~~~~~~ly~v~f~~~~~g~~~- 387 (398)
T PLN00033 314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGK----SWKRDKGADNIAANLYSVKFFDDKKGFVL- 387 (398)
T ss_pred cccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCc----ceeEccccCCCCcceeEEEEcCCCceEEE-
Confidence 2333332 2358999999999999999888776654 3333 22222222233456789999877665555
Q ss_pred ecCCeEEEE
Q 038577 160 SKDLAVRLF 168 (860)
Q Consensus 160 ~~dg~v~vw 168 (860)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 466776554
No 419
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.073 Score=59.75 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=102.9
Q ss_pred eeCCCCCcEEEEEECCCCCEEEEEe-cCCCeEEEEECCCCceE-----EEecCc------ccCeEEEEEcCCCC-EEEEE
Q 038577 429 FTTPSSRQFVSLASDQSGEVICAGT-LDSFEIFVWSMKTGRLL-----DILSGH------EGPVHGLVFSPTNA-TLASS 495 (860)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~v~d~~~~~~~-----~~~~~h------~~~v~~l~~s~~~~-~l~s~ 495 (860)
+..+....+..+...+|+...++.. .+|..|+.||+++-... ..+..| ..-..++.|.|.-. ..+.+
T Consensus 95 ~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~ 174 (1405)
T KOG3630|consen 95 FKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVD 174 (1405)
T ss_pred eeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhh
Confidence 3334445667777788877665543 33448999998754221 112212 23355677887643 35666
Q ss_pred eCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccc
Q 038577 496 SWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSA 575 (860)
Q Consensus 496 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (860)
..|+.|++..+................++++|+|.|+.+++|-..|++.-|.. +++....+......
T Consensus 175 l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~------------ 241 (1405)
T KOG3630|consen 175 LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVE------------ 241 (1405)
T ss_pred ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCCcC------------
Confidence 77999999887665555555567788999999999999999999999998875 44444444433221
Q ss_pred cccCCCCcEEEEEEecCCCEEEEec
Q 038577 576 ANSSSGKCFTTLCYSADGSYILAGG 600 (860)
Q Consensus 576 ~~~~~~~~i~~l~~s~~g~~l~~~~ 600 (860)
....|.+++|-..-.|+++-+
T Consensus 242 ----e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 242 ----ENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ----CCcceeEEEEecceeEEEEec
Confidence 124699999988888887643
No 420
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.21 E-value=0.01 Score=39.34 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=29.9
Q ss_pred ccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeE
Q 038577 52 SSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVV 86 (860)
Q Consensus 52 ~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~ 86 (860)
...|.+++|+|...+||.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 5543
No 421
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.15 E-value=0.015 Score=38.52 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCcee
Q 038577 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELM 554 (860)
Q Consensus 518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 554 (860)
....|..++|+|...++|.++.+|.|.+|.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 4567999999999999999999999999999 66543
No 422
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=96.14 E-value=0.45 Score=43.54 Aligned_cols=144 Identities=19% Similarity=0.272 Sum_probs=84.0
Q ss_pred CCEEEeeeCCeEEEEECCCCcE--EeeccCCccCeeEEEEcCCCCEEEEEcCC---C---cEEEE-EcccC----eEEE-
Q 038577 23 NTKLISPVGNRVSVTDLIKSKT--VTLPVESSSNICRIAVSPDGTFLLTVDEN---Q---RCHFI-NLHCH----VVLH- 88 (860)
Q Consensus 23 g~~l~~~~~~~i~v~d~~~~~~--~~~~~~h~~~v~~va~spdg~~la~~~~d---~---~i~vw-d~~~~----~~~~- 88 (860)
+.++++..++.|.+|++.+... ...+ ..-+.|..++++..|+||++.-.+ . .+++| |+... +.++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F-~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTF-STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEE-cchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4444557778999999983332 3333 455889999999999999996332 2 55664 33211 1111
Q ss_pred ----------------------EeecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcccceeEE---EEEeecc-C-
Q 038577 89 ----------------------RVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKEVFAFEL---IRTLADC-N- 141 (860)
Q Consensus 89 ----------------------~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~~~~~~~---~~~~~~h-~- 141 (860)
+++...++.+++-.|-.--|++|.++.+.+|.+.........+.. ...+-.| .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 112345678888888766777888999999987644321110000 0111111 1
Q ss_pred CCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577 142 DKVTALNWSPDSNYLLVGSKDLAVRLFYV 170 (860)
Q Consensus 142 ~~v~~l~~s~d~~~l~s~~~dg~v~vwd~ 170 (860)
-....++|. +.|+|..+. -.+++..+
T Consensus 188 ~~p~~v~ic--~~yiA~~s~-~ev~Vlkl 213 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMSD-LEVLVLKL 213 (215)
T ss_pred ceEEEEEEE--eeEEEEecC-CEEEEEEE
Confidence 113445554 457777654 46777655
No 423
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.09 E-value=2 Score=44.05 Aligned_cols=193 Identities=6% Similarity=0.030 Sum_probs=97.5
Q ss_pred CCCEEEEEE-cCCeEEEEECCC----ceeEEEEee---cC----ceeEEEEEeeCCCEEEEEEcc-----CCcEEEEEcc
Q 038577 275 GLDMVVVGF-SNGVFGLYQMPD----FVCIHLLSI---SR----EKITTAVFNELGNWLVFGCAK-----LGQLLVWEWR 337 (860)
Q Consensus 275 ~~~~l~~~~-~~g~i~~~~~~~----~~~~~~~~~---~~----~~i~~~~~s~~~~~l~~~~~~-----~g~i~v~d~~ 337 (860)
+.++|++.+ .++.|+++|+.+ .+..+.+.. .. .....+-.-|+|+.++++-++ .|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456677665 679999999873 333444432 11 223445556788888876543 2678888888
Q ss_pred CceEEEEecCc---ccCeEEEEEcCCCCEEEEEeC--------------------CCcEEEEECCCCeeEEEeecCCC--
Q 038577 338 SESYILKQQGH---YFDVNCLAYSPDSQLLATGAD--------------------DNKVKVWTVSSGFCFVTFTEHTN-- 392 (860)
Q Consensus 338 ~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~--------------------dg~i~iwd~~~~~~~~~~~~~~~-- 392 (860)
+.......... ..--..+.|.|..+.+++... ..++.+||+.+.+.++++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 77777666432 223456778888888887542 35799999999999998865432
Q ss_pred ceEEEEEeeC--CCE-EEEEeCCCcEEEEEc-cccc--eeeEeeCCC------------------CCcEEEEEECCCCCE
Q 038577 393 AVTALHFMAN--NHS-LLSASLDGTVRAWDL-FRYR--NFRTFTTPS------------------SRQFVSLASDQSGEV 448 (860)
Q Consensus 393 ~v~~i~~~~~--~~~-l~s~~~dg~i~~wd~-~~~~--~~~~~~~~~------------------~~~~~~~~~~~~~~~ 448 (860)
.+..+.|..+ ..+ ++.+.-.++|..|-- ..++ ..+.+..+. +.-++.+.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3556777544 333 333334444544433 2221 111121111 234788999999999
Q ss_pred EEEEecCCCeEEEEECCCC
Q 038577 449 ICAGTLDSFEIFVWSMKTG 467 (860)
Q Consensus 449 l~~~~~~~~~i~v~d~~~~ 467 (860)
|.+++.-.+.++.||+...
T Consensus 326 LYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEETTTTEEEEEE-SST
T ss_pred EEEEcccCCcEEEEecCCC
Confidence 9999998889999999864
No 424
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.05 E-value=2.1 Score=43.86 Aligned_cols=248 Identities=10% Similarity=0.063 Sum_probs=121.3
Q ss_pred eEEEEEcCCCCeEEEeecCCeEEEEeecccccCcc-cccceEeecCCCcEEEEEEccCCCCCccceEEEEcCC-------
Q 038577 144 VTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIH-TNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARD------- 215 (860)
Q Consensus 144 v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~-~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~d------- 215 (860)
.+.|+|.|||+.++ +...|.|++++.+.. .... ................++++|+-.... +|+.....
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~~~g~-~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~--~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVDKDGS-LKTPVADLPEVFADGERGLLGIAFHPDFASNG--YLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEETTTE-ECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC---EEEEEEEEE-TSSSS
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEeCCCc-CcceecccccccccccCCcccceeccccCCCC--EEEEEEEcccCCCCC
Confidence 47899999987655 456999999993322 1000 000112334566789999999522111 34433331
Q ss_pred --ccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeee-e-ccccCCCCceEEEEecCCCCEEEEEEcC------
Q 038577 216 --CYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLR-K-DDFSQAPSKVTACDYHRGLDMVVVGFSN------ 285 (860)
Q Consensus 216 --g~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~------ 285 (860)
..|.-|....... ......... . .........-..+.|.|+|.+.++.+..
T Consensus 80 ~~~~v~r~~~~~~~~-------------------~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~ 140 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDG-------------------DLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNA 140 (331)
T ss_dssp EEEEEEEEEEETTSC-------------------EEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGG
T ss_pred cceeeEEEeccCCcc-------------------ccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccc
Confidence 2444455443210 001111111 1 1111233456779999999655544332
Q ss_pred -------CeEEEEECCCce-------------eEEEEeecCceeEEEEEeeC-CCEEEEEEccCCcEEEEEccCc-----
Q 038577 286 -------GVFGLYQMPDFV-------------CIHLLSISREKITTAVFNEL-GNWLVFGCAKLGQLLVWEWRSE----- 339 (860)
Q Consensus 286 -------g~i~~~~~~~~~-------------~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~~~g~i~v~d~~~~----- 339 (860)
|.|.-.+.. ++ ....+...-.....++|.|. |+..+.-...++.=.+.-+..+
T Consensus 141 ~~~~~~~G~ilri~~d-G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGW 219 (331)
T PF07995_consen 141 QDPNSLRGKILRIDPD-GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGW 219 (331)
T ss_dssp CSTTSSTTEEEEEETT-SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--T
T ss_pred cccccccceEEEeccc-CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCC
Confidence 444444432 21 11112222335668899998 5555544333222222211111
Q ss_pred ------------------------eEEEEecCcccCeEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeEE---
Q 038577 340 ------------------------SYILKQQGHYFDVNCLAYSP-------DSQLLATGADDNKVKVWTVSSGFCFV--- 385 (860)
Q Consensus 340 ------------------------~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~--- 385 (860)
.....+..| ..+..+.|.. .|.++++.-..+.|....+..+..+.
T Consensus 220 P~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~ 298 (331)
T PF07995_consen 220 PYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE 298 (331)
T ss_dssp TTBSSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE
T ss_pred CCCcCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE
Confidence 011222223 3456666653 34566666666788888876553322
Q ss_pred E-eecCCCceEEEEEeeCCCEEEEEeCCCcEE
Q 038577 386 T-FTEHTNAVTALHFMANNHSLLSASLDGTVR 416 (860)
Q Consensus 386 ~-~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~ 416 (860)
. +......+..+++.|||..+++...+|.|.
T Consensus 299 ~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 299 EFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred EccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 2 223444799999999998888888888764
No 425
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.95 E-value=1.7 Score=42.00 Aligned_cols=209 Identities=14% Similarity=0.138 Sum_probs=123.0
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEECC------CC-eeEEEeec-----CCCceEEEEEeeCCC------------EE
Q 038577 351 DVNCLAYSPDSQLLATGADDNKVKVWTVS------SG-FCFVTFTE-----HTNAVTALHFMANNH------------SL 406 (860)
Q Consensus 351 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~i~~~~~~~------------~l 406 (860)
.-+.++++|.+.+-++....+...+||.. .. ..+..+.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888887778899999986 12 22333331 234677787764322 36
Q ss_pred EEEeCCCcEEEEEccccce-----eeEeeCCC-CCcEEEEEEC--CCCCEEEEEecCCCeEEEEECCCCceEEEecCccc
Q 038577 407 LSASLDGTVRAWDLFRYRN-----FRTFTTPS-SRQFVSLASD--QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEG 478 (860)
Q Consensus 407 ~s~~~dg~i~~wd~~~~~~-----~~~~~~~~-~~~~~~~~~~--~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~ 478 (860)
+.+++||+|.-|...-... ...+.... ..-...+++. ..+.+|+++....++|.+||-.-.+.... .....
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~-g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLP-GSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCC-CCccC
Confidence 7889999999998533222 12222221 2223444444 44778888777777999998653322100 00000
Q ss_pred CeEEEEEcC------CCCEEEE-------------EeCCCcEEEEEccCCcceeEEc--ccCCCeEEEEEee------CC
Q 038577 479 PVHGLVFSP------TNATLAS-------------SSWDKTVRLWNVFEGKGSVESF--PHTHDVLTVVYRP------DG 531 (860)
Q Consensus 479 ~v~~l~~s~------~~~~l~s-------------~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~------~~ 531 (860)
+-.-.-|.| .+++.++ +..-|.|-+||.... .+.++. +.-...+.++..| .|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 000001111 1222222 223468999997544 333332 3344567777766 56
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 532 RQLACSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 532 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
.+|+---.||+|..||..+++.+..+....
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCC
Confidence 677766779999999999999888776543
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.93 Score=45.92 Aligned_cols=108 Identities=15% Similarity=0.199 Sum_probs=80.1
Q ss_pred EeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe----e-cCCceeEEEECCCCCEEEEEeCCeEEEE
Q 038577 45 VTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV----R-FKYPVNAILFSPNGKYIAVGTGKLVQIW 119 (860)
Q Consensus 45 ~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~----~-~~~~v~~~~fspdg~~la~~~~~~i~iw 119 (860)
..+....+++|.++.||+|.+.||+--.+.+|.+.+....+..... + ....|....|+.. .-+|...+..+.+|
T Consensus 59 iSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y 137 (657)
T KOG2377|consen 59 ISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFY 137 (657)
T ss_pred ceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEE
Confidence 4444457789999999999999999999999999988544333222 2 2345889999865 77888878888888
Q ss_pred eCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEe
Q 038577 120 RSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVG 159 (860)
Q Consensus 120 d~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~ 159 (860)
-...... .++..+.|...|....|.++.+.++-+
T Consensus 138 ~v~pekr------slRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 138 QVLPEKR------SLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred EEchhhh------hhhhhhhcccCccEEEEccccceEeee
Confidence 7765543 245566788899999999988755443
No 427
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=95.82 E-value=4.6 Score=45.93 Aligned_cols=172 Identities=15% Similarity=0.179 Sum_probs=88.5
Q ss_pred cEEEEEccCceEEEEecCc----ccCeEEEEEcCCCC--EEEEEeC-----------CCcEEEEECC-CCeeEEEee--c
Q 038577 330 QLLVWEWRSESYILKQQGH----YFDVNCLAYSPDSQ--LLATGAD-----------DNKVKVWTVS-SGFCFVTFT--E 389 (860)
Q Consensus 330 ~i~v~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~--~l~~~~~-----------dg~i~iwd~~-~~~~~~~~~--~ 389 (860)
.|++.|..+++.+..+.-. ...+..+.|+.... ++++|.. +|.++.|+.- .++.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 5778888877766555321 22355556655333 3333322 3446666643 333222221 1
Q ss_pred CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCC-CCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCC
Q 038577 390 HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPS-SRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTG 467 (860)
Q Consensus 390 ~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~ 467 (860)
-.++|. +++|...++++| ....+++||+.+.+..+...... +..+..+. ..+..+++|.... .....|+....
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iq--t~~~RI~VgD~qeSV~~~~y~~~~n 1008 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQ--TYGARIVVGDIQESVHFVRYRREDN 1008 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEe--ecceEEEEeeccceEEEEEEecCCC
Confidence 223343 445655555544 44689999998887776655544 22333333 3455666666544 23344554444
Q ss_pred ceEEEecC-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 038577 468 RLLDILSG-HEGPVHGLVFSPTNATLASSSWDKTVRLWNVF 507 (860)
Q Consensus 468 ~~~~~~~~-h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~ 507 (860)
+++..... -...|+++.+- |...+|.+..-|.+.+-.+.
T Consensus 1009 ~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1009 QLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred eEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 44332221 22345555554 44557766666666655543
No 428
>PHA03098 kelch-like protein; Provisional
Probab=95.68 E-value=0.43 Score=53.15 Aligned_cols=188 Identities=10% Similarity=0.027 Sum_probs=90.0
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCeeEEEe--ecCCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEcccccee
Q 038577 360 DSQLLATGADDN------KVKVWTVSSGFCFVTF--TEHTNAVTALHFMANNHSLLSASLDG-----TVRAWDLFRYRNF 426 (860)
Q Consensus 360 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~ 426 (860)
++..++.|+.++ .+..||..+..-...- ........ + ..-+++.++.||.++ .+..||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-V-TVFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-E-EEECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666432 5677887765442211 11111111 2 223566777787653 4667887654422
Q ss_pred eEeeCCCCCcEEEEEECCCCCEEEEEecCC-----CeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCC--
Q 038577 427 RTFTTPSSRQFVSLASDQSGEVICAGTLDS-----FEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDK-- 499 (860)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg-- 499 (860)
..-..+.+..-.++ ..-+++..+.|+... ..+..||..+.+....-......-...+...++...+.|+.++
T Consensus 372 ~~~~lp~~r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 450 (534)
T PHA03098 372 EEPPLIFPRYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYID 450 (534)
T ss_pred eCCCcCcCCccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCC
Confidence 21112222111222 233566666666321 2688999887654322111111111112223566667776432
Q ss_pred ------cEEEEEccCCcceeEE-ccc-CCCeEEEEEeeCCCEEEEEeCC-----CeEEEEeCCCCc
Q 038577 500 ------TVRLWNVFEGKGSVES-FPH-THDVLTVVYRPDGRQLACSTLD-----GQIHFWDPLNGE 552 (860)
Q Consensus 500 ------~i~iwd~~~~~~~~~~-~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 552 (860)
.+.+||..+.+-.... ... ......+. -++++++.|+.+ ..+.+||+.+.+
T Consensus 451 ~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 451 NIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 3788888765421110 111 11111222 267777777654 468888877654
No 429
>PHA03098 kelch-like protein; Provisional
Probab=95.63 E-value=0.5 Score=52.60 Aligned_cols=191 Identities=10% Similarity=0.046 Sum_probs=90.2
Q ss_pred CCCCEEEEEEcC------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccC----CcEEEEEccCceEEE
Q 038577 274 RGLDMVVVGFSN------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKL----GQLLVWEWRSESYIL 343 (860)
Q Consensus 274 ~~~~~l~~~~~~------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~----g~i~v~d~~~~~~~~ 343 (860)
.++..+++|+.+ ..+..||..+.+-...-.............-++...++++... ..+..||..+++...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 455666677654 2577888776554332111111112222334566666665431 357788887765443
Q ss_pred EecCcccC-eEEEEEcCCCCEEEEEeCC------CcEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCCC-
Q 038577 344 KQQGHYFD-VNCLAYSPDSQLLATGADD------NKVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDG- 413 (860)
Q Consensus 344 ~~~~~~~~-v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg- 413 (860)
........ -.+++ .-+++..+.|+.+ +.+..||+.+++-... +...... .++ ...++..++.||.++
T Consensus 373 ~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 373 EPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISYI 449 (534)
T ss_pred CCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccCC
Confidence 21111111 11122 2356677777632 3578888876533221 1111111 122 223566666666432
Q ss_pred -------cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCc
Q 038577 414 -------TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGR 468 (860)
Q Consensus 414 -------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~ 468 (860)
.+.+||..+.+=...-..+.+....+++ .-+++.++.|+.++ ..+.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 3778887765422211111111111122 22566666666541 267778777654
No 430
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.46 E-value=0.63 Score=48.65 Aligned_cols=145 Identities=15% Similarity=0.206 Sum_probs=80.2
Q ss_pred CcEEEEEECCCCCEEEEEec-----------CCCeEEEEECCC--Cce--EEEecCcccCeEEEEEcCCCCEEEEEeCCC
Q 038577 435 RQFVSLASDQSGEVICAGTL-----------DSFEIFVWSMKT--GRL--LDILSGHEGPVHGLVFSPTNATLASSSWDK 499 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~-----------~~~~i~v~d~~~--~~~--~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg 499 (860)
.....++++++|+++++... .+..|.+++-.. |+. ...+.........+++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 35678899999998777531 122677776543 332 23343334456889999988 444 44443
Q ss_pred cEEEEEccCC-----c--ceeEEcc-----cCCCeEEEEEeeCCCEEEEEeCC-------------------CeEEEEeC
Q 038577 500 TVRLWNVFEG-----K--GSVESFP-----HTHDVLTVVYRPDGRQLACSTLD-------------------GQIHFWDP 548 (860)
Q Consensus 500 ~i~iwd~~~~-----~--~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d-------------------g~i~iwd~ 548 (860)
..++.|.... + .+..-.. +......++|.|||.+.++.+.. |.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3333344321 1 1111111 13447789999999876655421 33444454
Q ss_pred CCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC
Q 038577 549 LNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS 602 (860)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 602 (860)
.+++....-.+.+ ....++|+|+|+++++-..+
T Consensus 172 dg~~~e~~a~G~r---------------------np~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 172 DGGKLRVVAHGFQ---------------------NPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCCeEEEEecCcC---------------------CCccceECCCCCEEEEccCC
Confidence 4433222112222 25789999999988765433
No 431
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.45 E-value=2.4 Score=40.14 Aligned_cols=233 Identities=9% Similarity=-0.004 Sum_probs=149.9
Q ss_pred CCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEE
Q 038577 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYIL 343 (860)
Q Consensus 264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~ 343 (860)
.+.-..++..|||..-+++...|.|--.|..+++....--........+..-|||..-++-... .|.-.|-++.+...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~--aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL--AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc--eeEEecCcccceEE
Confidence 3456778889999999999999999999998888776655555667788888888776654332 45555655543322
Q ss_pred E-e--cCcccCeEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeC
Q 038577 344 K-Q--QGHYFDVNCLAYSPDSQLLATGADD---------NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASL 411 (860)
Q Consensus 344 ~-~--~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~ 411 (860)
- + ...........|.+.|+.-+++... +.|++|+.. .......|+..|+|..-++.-.
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyasla 208 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLA 208 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEecc
Confidence 1 1 2234567788899999888887531 234444432 3345678899999988888777
Q ss_pred CCcEEEEEccccceeeEeeCCC--CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE-EEecCcccCeEEEEEcCC
Q 038577 412 DGTVRAWDLFRYRNFRTFTTPS--SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL-DILSGHEGPVHGLVFSPT 488 (860)
Q Consensus 412 dg~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~-~~~~~h~~~v~~l~~s~~ 488 (860)
+..|...|..++ ....+..+. ......+..+|.|+.-++....+ .+..||.....-. ..+.+....-.++.....
T Consensus 209 gnaiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g-~l~rfdPs~~sW~eypLPgs~arpys~rVD~~ 286 (353)
T COG4257 209 GNAIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTG-SLHRFDPSVTSWIEYPLPGSKARPYSMRVDRH 286 (353)
T ss_pred ccceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCc-eeeEeCcccccceeeeCCCCCCCcceeeeccC
Confidence 778888887766 333333332 23345566778888777655444 8888887654432 344555555566666555
Q ss_pred CCEEEEEeCCCcEEEEEccCCc
Q 038577 489 NATLASSSWDKTVRLWNVFEGK 510 (860)
Q Consensus 489 ~~~l~s~~~dg~i~iwd~~~~~ 510 (860)
++.-.+--..|.|.-+|-++.+
T Consensus 287 grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 287 GRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred CcEEeeccccCceeecCcccce
Confidence 5544444444566666655543
No 432
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.34 E-value=4.4 Score=42.42 Aligned_cols=266 Identities=11% Similarity=0.045 Sum_probs=140.1
Q ss_pred CCCEEEEEEcCCeEEEEECCCce-----eEEEEeecCceeEEEEEee-----CCCEEEEEEccCCcEEEEEccCc--e--
Q 038577 275 GLDMVVVGFSNGVFGLYQMPDFV-----CIHLLSISREKITTAVFNE-----LGNWLVFGCAKLGQLLVWEWRSE--S-- 340 (860)
Q Consensus 275 ~~~~l~~~~~~g~i~~~~~~~~~-----~~~~~~~~~~~i~~~~~s~-----~~~~l~~~~~~~g~i~v~d~~~~--~-- 340 (860)
+.+.+++|+..|.+++|+..... .+.+. .-..+|..+..-+ +...|++- .. ..+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVL-hP-~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVL-HP-RKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEe-cC-CEEEEEEEEecCCCcc
Confidence 44689999999999999986433 11111 2234666665542 22344443 33 68888877321 1
Q ss_pred -----EEEEecCccc--CeEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEE
Q 038577 341 -----YILKQQGHYF--DVNCLAYSP----D-SQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLS 408 (860)
Q Consensus 341 -----~~~~~~~~~~--~v~~~~~s~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s 408 (860)
.+.....|.- ....+++-| . ..++++-+.||.+.+|+-+.-.....+.. .--...+++++....+++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 1122222321 122333322 2 35788889999999999665443333332 333456788888889999
Q ss_pred EeCCCcEEEEEccccce---------------------eeEeeCCCCCcEEE---EEECCCCCEEEEEecCCCeEEEEEC
Q 038577 409 ASLDGTVRAWDLFRYRN---------------------FRTFTTPSSRQFVS---LASDQSGEVICAGTLDSFEIFVWSM 464 (860)
Q Consensus 409 ~~~dg~i~~wd~~~~~~---------------------~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~i~v~d~ 464 (860)
++.+..+..|....-.. ...+...-...+.. +.++.....+++-+.. .+++.+.
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger--~Lf~l~~ 269 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGER--SLFCLKD 269 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecc--eEEEEcC
Confidence 99998999887632110 00111111122222 3333333344444333 5777775
Q ss_pred CCCceEEEecCcccCeEEE-EEcC----CC---CEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEE---EeeCCCE
Q 038577 465 KTGRLLDILSGHEGPVHGL-VFSP----TN---ATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVV---YRPDGRQ 533 (860)
Q Consensus 465 ~~~~~~~~~~~h~~~v~~l-~~s~----~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~---~s~~~~~ 533 (860)
+|.+....+ ......++ .|.. ++ ..++.++.++++.||.=. +..........+ .++. |..-...
T Consensus 270 -~G~l~~~kr-Ld~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~P-Val~v~~~~~~~G~ 344 (418)
T PF14727_consen 270 -NGSLRFQKR-LDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVP-VALSVANFNGLKGL 344 (418)
T ss_pred -CCeEEEEEe-cCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCC-EEEEecccCCCCce
Confidence 355443333 22222222 2221 22 247888889999998632 212221112222 2332 2223447
Q ss_pred EEEEeCCCeEEEEeCCCC
Q 038577 534 LACSTLDGQIHFWDPLNG 551 (860)
Q Consensus 534 l~~~~~dg~i~iwd~~~~ 551 (860)
+++-+.+|.+.+-=+.|.
T Consensus 345 IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 345 IVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEEcCCCcEEEEEeCCC
Confidence 777788888887766543
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.31 E-value=0.93 Score=49.57 Aligned_cols=115 Identities=15% Similarity=0.191 Sum_probs=76.2
Q ss_pred cCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeec--CCceeEEEEC--CCCC-EEEEEeCCeEEEEeC-----C
Q 038577 53 SNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRF--KYPVNAILFS--PNGK-YIAVGTGKLVQIWRS-----P 122 (860)
Q Consensus 53 ~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~--~~~v~~~~fs--pdg~-~la~~~~~~i~iwd~-----~ 122 (860)
..++-+.-|.-++..++-+...++.|||...+.....-.+ .+.|.++.|. |||+ .||+|-.+.|.+|-- .
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 3456666666666555545557899999999886665554 8899999995 5775 566778888888853 2
Q ss_pred CCCcccceeEEEEEeeccC-CCeEEEEEcCCCCeEEEeecCCeEEEEee
Q 038577 123 GFKKEVFAFELIRTLADCN-DKVTALNWSPDSNYLLVGSKDLAVRLFYV 170 (860)
Q Consensus 123 ~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~d~~~l~s~~~dg~v~vwd~ 170 (860)
...+.+.+.+.+ .+..|+ .+|.+..|.++|..++.++ ..+.|+|-
T Consensus 110 ~~~p~w~~i~~i-~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKI-DISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEE-EeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 233333333222 234454 6799999999997555443 46778764
No 434
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.25 E-value=0.55 Score=51.74 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=98.3
Q ss_pred ccCCcEEEeCCCEEEeeeCCeEEEEECCCCcEEee------c--c--------------CCccCeeEEEEcC--CCCEEE
Q 038577 13 YRGGNAVLSQNTKLISPVGNRVSVTDLIKSKTVTL------P--V--------------ESSSNICRIAVSP--DGTFLL 68 (860)
Q Consensus 13 ~~~~~~~~sdg~~l~~~~~~~i~v~d~~~~~~~~~------~--~--------------~h~~~v~~va~sp--dg~~la 68 (860)
|+..-.+.+.+.+++.+.++.|.||++..-..... + . .....|..|.+.. +...|+
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 44444444468899999999999999875443210 0 0 0112244444432 456788
Q ss_pred EEcCCCcEEEEEccc-------C-------------eEEEEeecCCceeEEEEC--CCCCEEEEE-eCCeEEEEeCCCCC
Q 038577 69 TVDENQRCHFINLHC-------H-------------VVLHRVRFKYPVNAILFS--PNGKYIAVG-TGKLVQIWRSPGFK 125 (860)
Q Consensus 69 ~~~~d~~i~vwd~~~-------~-------------~~~~~~~~~~~v~~~~fs--pdg~~la~~-~~~~i~iwd~~~~~ 125 (860)
.+.+||.|.+|.+++ . ++...+..+..+.++++. ...++||++ ....|.||-.....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~ 198 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD 198 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc
Confidence 899999999996531 1 012233356678899998 888999999 55677777654421
Q ss_pred cccceeEEEEEeeccCCCeEEEEEcCCC---C---eEEEeecCCeEEEEeec
Q 038577 126 KEVFAFELIRTLADCNDKVTALNWSPDS---N---YLLVGSKDLAVRLFYVK 171 (860)
Q Consensus 126 ~~~~~~~~~~~~~~h~~~v~~l~~s~d~---~---~l~s~~~dg~v~vwd~~ 171 (860)
.... ...-..|...|.+|+|-++. . .+++++-.|.+.+|++.
T Consensus 199 ~r~~----~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 199 ERFY----HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred cccc----cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 1100 01111266779999997754 2 67788889999999883
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.19 E-value=1 Score=47.12 Aligned_cols=106 Identities=11% Similarity=0.072 Sum_probs=59.8
Q ss_pred cCeeEEEEcCCCCEEEEEc-----------CCC-cEEEEEccc--CeE--EEEee-cCCceeEEEECCCCCEEEEEeCCe
Q 038577 53 SNICRIAVSPDGTFLLTVD-----------ENQ-RCHFINLHC--HVV--LHRVR-FKYPVNAILFSPNGKYIAVGTGKL 115 (860)
Q Consensus 53 ~~v~~va~spdg~~la~~~-----------~d~-~i~vwd~~~--~~~--~~~~~-~~~~v~~~~fspdg~~la~~~~~~ 115 (860)
....+|+|.++|+++++-. ..+ .|.+++-.+ |+. ...+. .-.....++|.++| ++++. ...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~-~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT-PPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-CCe
Confidence 4568899999999777642 223 677776432 332 22222 23346889999999 55543 444
Q ss_pred EEEE-eCCCCCccc-ceeEEEEEeec----cCCCeEEEEEcCCCCeEEEee
Q 038577 116 VQIW-RSPGFKKEV-FAFELIRTLAD----CNDKVTALNWSPDSNYLLVGS 160 (860)
Q Consensus 116 i~iw-d~~~~~~~~-~~~~~~~~~~~----h~~~v~~l~~s~d~~~l~s~~ 160 (860)
|..| +........ ..-.++..+.. +......++|.|||.+.++.+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 5444 554322111 11122333332 234477899999998766544
No 436
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.13 E-value=2.6 Score=38.76 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=70.9
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEEcc--cCeEEEEeecCCceeEEEECCCCCEEEEE----eCC---eEEEE-eCCC
Q 038577 54 NICRIAVSPDGTFLLTVDENQRCHFINLH--CHVVLHRVRFKYPVNAILFSPNGKYIAVG----TGK---LVQIW-RSPG 123 (860)
Q Consensus 54 ~v~~va~spdg~~la~~~~d~~i~vwd~~--~~~~~~~~~~~~~v~~~~fspdg~~la~~----~~~---~i~iw-d~~~ 123 (860)
+..++.-++.+ .|..+...+.|.+|++. ..+.+.++..-+.|..+.++..|+||++- ... .+++| |+..
T Consensus 19 EP~~~c~~g~d-~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 19 EPTAVCCGGPD-ALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred CcceeeccCCc-eEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence 34444444433 34333455789999988 55677778777999999999999999998 122 55654 3332
Q ss_pred CCcccceeEEEEEeecc---------------------CCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577 124 FKKEVFAFELIRTLADC---------------------NDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK 173 (860)
Q Consensus 124 ~~~~~~~~~~~~~~~~h---------------------~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~ 173 (860)
......+ ...++.|| ...+.+++..|-..-|+.|+. +.+.+|.+...
T Consensus 98 ~~~~~~~--v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 98 QKEENSP--VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred hcccCCc--EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 2111111 11122222 335677777775555666655 48999988765
No 437
>PRK13684 Ycf48-like protein; Provisional
Probab=95.05 E-value=4.8 Score=41.32 Aligned_cols=177 Identities=11% Similarity=0.146 Sum_probs=96.4
Q ss_pred EEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEE-EECCCCc-eEEEecCcccCeEEEEE
Q 038577 408 SASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFV-WSMKTGR-LLDILSGHEGPVHGLVF 485 (860)
Q Consensus 408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v-~d~~~~~-~~~~~~~h~~~v~~l~~ 485 (860)
.++..|.|.. ....++.-..+..+....+..+.+.|++.+++++... .++. +| ..++ .......-...++++.+
T Consensus 147 ~~g~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G--~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~ 222 (334)
T PRK13684 147 MATNVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRG--NFYSTWE-PGQTAWTPHQRNSSRRLQSMGF 222 (334)
T ss_pred eeeccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCc--eEEEEcC-CCCCeEEEeeCCCcccceeeeE
Confidence 3444444422 2223444444444555678889999998877666543 3332 22 2222 22222334567899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccCCcceeEEc-c---cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEeccc
Q 038577 486 SPTNATLASSSWDKTVRLWNVFEGKGSVESF-P---HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRR 561 (860)
Q Consensus 486 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~---~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 561 (860)
.++++.++.+ ..|.+++=....+..-.... + ....+.++.+.|++..++++ .+|.+. ...+.|+.-...+...
T Consensus 223 ~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~ 299 (334)
T PRK13684 223 QPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGE 299 (334)
T ss_pred cCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCC
Confidence 9999877665 46766532333333111111 1 22457889999988765554 566554 3444444333332111
Q ss_pred ccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEEEEE
Q 038577 562 DISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYICMYD 609 (860)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~vwd 609 (860)
.. ......+.|..+++.++ .+..|.|.-|+
T Consensus 300 ~~-----------------~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 300 EV-----------------PSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred CC-----------------CcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 10 12377888877776655 55677776665
No 438
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.04 E-value=8.1 Score=43.88 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.3
Q ss_pred CCceEEEEecCC---CCEEEEEEcCCeEEEEECCCce
Q 038577 264 PSKVTACDYHRG---LDMVVVGFSNGVFGLYQMPDFV 297 (860)
Q Consensus 264 ~~~v~~~~~~~~---~~~l~~~~~~g~i~~~~~~~~~ 297 (860)
...|..+.|+|. +..|++-+.|+.+++||+....
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 456888999987 4899999999999999996543
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.02 E-value=0.012 Score=59.27 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=109.0
Q ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEE--eCCeEEEEeCCCCCcccceeE
Q 038577 55 ICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVG--TGKLVQIWRSPGFKKEVFAFE 132 (860)
Q Consensus 55 v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~--~~~~i~iwd~~~~~~~~~~~~ 132 (860)
.-...|-|.+.-++.++.+..+..||- .++.......++...+++|..+|..+++. ..+.+.+||+.+...+.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq---- 111 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ---- 111 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhh-hcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH----
Confidence 345567788877998888888889984 45555555567778889999999888777 77899999998754210
Q ss_pred EEEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEE
Q 038577 133 LIRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTI 212 (860)
Q Consensus 133 ~~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~ 212 (860)
-.+ +-...-.-+.|++.+..++.+...|.+.|++..+. +.......|...+.++++.+.+ +.+.+
T Consensus 112 --LE~-gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts------R~iiv~Gkh~RRgtq~av~lEd------~vil~ 176 (615)
T KOG2247|consen 112 --LES-GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS------RRIIVMGKHQRRGTQIAVTLED------YVILC 176 (615)
T ss_pred --Hhc-cCcchHHHHhhccCCccccccccccceEEEeccch------hhhhhhcccccceeEEEecccc------eeeec
Confidence 011 11112223789999999999999999999998877 4455555599999999999987 67777
Q ss_pred cCCccEEEeee
Q 038577 213 ARDCYMFSWGF 223 (860)
Q Consensus 213 ~~dg~i~~w~~ 223 (860)
+.|..+.+-..
T Consensus 177 dcd~~L~v~~q 187 (615)
T KOG2247|consen 177 DCDNTLSVTTQ 187 (615)
T ss_pred CcHHHHHHhhh
Confidence 77766654433
No 440
>PHA02790 Kelch-like protein; Provisional
Probab=94.89 E-value=1.4 Score=47.91 Aligned_cols=187 Identities=12% Similarity=0.030 Sum_probs=89.1
Q ss_pred CCCEEEEEeCCC-----cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC-CeEEEEECCCCceEEEecC
Q 038577 402 NNHSLLSASLDG-----TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS-FEIFVWSMKTGRLLDILSG 475 (860)
Q Consensus 402 ~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~v~d~~~~~~~~~~~~ 475 (860)
++..+++||.++ .+..||..+.+-...-..+....-.++ ..-++...++|+.++ ..+..||..+++....-.-
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 344566666543 466788766543222222222111222 234667777777532 3688888776544322111
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCC---cEEEEEccCCcceeEEcc-cCCC-eEEEEEeeCCCEEEEEeCCCeEEEEeCCC
Q 038577 476 HEGPVHGLVFSPTNATLASSSWDK---TVRLWNVFEGKGSVESFP-HTHD-VLTVVYRPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 476 h~~~v~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~-~~~~-v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
....-...+..-+|+..+.|+.++ .+..||..+.+ ..... ...+ ....+..-++++.+.| |.+.+||..+
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~ 424 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESS 424 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCC
Confidence 111111112223677777777653 46778876553 11111 0001 1112223366666665 3567888766
Q ss_pred CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCC-----CeEEEEECCCce
Q 038577 551 GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSS-----KYICMYDVADQV 614 (860)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-----g~v~vwd~~~~~ 614 (860)
.+-...-..... ......+ .-+|+..+.||.+ ..+..||..+++
T Consensus 425 ~~W~~~~~m~~~------------------r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 425 NTWTLIDDPIYP------------------RDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CcEeEcCCCCCC------------------ccccEEE--EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 532211111100 0012222 3377877888754 356777777664
No 441
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=3.1 Score=45.38 Aligned_cols=214 Identities=10% Similarity=0.059 Sum_probs=109.6
Q ss_pred EEEEecCCCCEEEEEEcC----------CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEcc
Q 038577 268 TACDYHRGLDMVVVGFSN----------GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWR 337 (860)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~----------g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~ 337 (860)
.-++..|.|.-+|+.-.+ -.|+||+. +|..+..+.-....+..+.|+.+...+++. .+|++.+|++-
T Consensus 36 ~~fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~--k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 36 VYFACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQ--KDGTVHVYGLL 112 (829)
T ss_pred eEEEecccCCceEEEecccccccccccceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEe--ccceEEEeecc
Confidence 344445555555555444 34788887 666666655555688999999887766654 34999999986
Q ss_pred CceEEEE---ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeec---CCCceEEEEEeeCCC---EEEE
Q 038577 338 SESYILK---QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTE---HTNAVTALHFMANNH---SLLS 408 (860)
Q Consensus 338 ~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~i~~~~~~~---~l~s 408 (860)
....... .......|..+.+..+|-.+.+ .+|.+.+-+-.....+..+.. ...+-.+-...+++. .++-
T Consensus 113 ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~ 190 (829)
T KOG2280|consen 113 GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLD 190 (829)
T ss_pred hhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEe
Confidence 5432221 1222334555555556633333 344554433222212222221 111111211122211 1111
Q ss_pred Ee-CCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec--CcccCeEEEEE
Q 038577 409 AS-LDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--GHEGPVHGLVF 485 (860)
Q Consensus 409 ~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~ 485 (860)
.. ..+ ..++..................+..+.+||++++|+.-...| .|.+.+....+....+. .|. +...++|
T Consensus 191 v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G-~i~~vs~D~~~~lce~~~~~~~-~p~qm~W 267 (829)
T KOG2280|consen 191 VDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETG-KIWVVSIDLSQILCEFNCTDHD-PPKQMAW 267 (829)
T ss_pred echhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCC-cEEEEecchhhhhhccCCCCCC-chHhcee
Confidence 11 000 011111111111111111135678899999999999999888 89998888776666554 232 2235666
Q ss_pred cCCC
Q 038577 486 SPTN 489 (860)
Q Consensus 486 s~~~ 489 (860)
..+.
T Consensus 268 cgnd 271 (829)
T KOG2280|consen 268 CGND 271 (829)
T ss_pred ecCC
Confidence 5443
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=1.8 Score=47.10 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=97.9
Q ss_pred CcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeE-e-eCCCCCcEEEEEECCCCCE
Q 038577 371 NKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRT-F-TTPSSRQFVSLASDQSGEV 448 (860)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 448 (860)
-.|+||+. +|..+..+.-....+..+.|+.+. .|++...+|++.+|++........ . .......|..+.+..+|-.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 46888886 466666555555588899998765 678888999999999853322110 1 0111223444555555554
Q ss_pred EEEEecCCCeEEEEECCCCceEEEecC---cccCeEEEEEcCCCC---EEEEEe-CCCcEEEEEccCCcc-eeEEcccCC
Q 038577 449 ICAGTLDSFEIFVWSMKTGRLLDILSG---HEGPVHGLVFSPTNA---TLASSS-WDKTVRLWNVFEGKG-SVESFPHTH 520 (860)
Q Consensus 449 l~~~~~~~~~i~v~d~~~~~~~~~~~~---h~~~v~~l~~s~~~~---~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 520 (860)
+.+.+.+ .+.+.+... ..+..++. ...+-+|-...+++. .++-.. ..+ ..++-...... ...+.....
T Consensus 142 vlt~~g~--v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 142 VLTVSGQ--VILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred EEecCCc--EEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCc
Confidence 4444322 233333322 12222221 111212222222221 111110 011 01111222211 112222346
Q ss_pred CeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 038577 521 DVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEG 559 (860)
Q Consensus 521 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 559 (860)
.+..+..||+.++|+--...|.|.+-+.+..+.+..+..
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 788899999999999999999999999888877777664
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=94.73 E-value=2.2 Score=46.44 Aligned_cols=188 Identities=9% Similarity=-0.053 Sum_probs=87.3
Q ss_pred CCCEEEEEEcC-----CeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEcc-CCcEEEEEccCceEEEEecCc
Q 038577 275 GLDMVVVGFSN-----GVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAK-LGQLLVWEWRSESYILKQQGH 348 (860)
Q Consensus 275 ~~~~l~~~~~~-----g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~-~g~i~v~d~~~~~~~~~~~~~ 348 (860)
++..+++|+.+ ..+..||..+.+-...-.............-+|...++++.+ ...+..||..+++......-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 44556677654 356778877655433222222221222233456666666543 245788887766543322111
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEE--eecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEcccc
Q 038577 349 YFDVNCLAYSPDSQLLATGADDN---KVKVWTVSSGFCFVT--FTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRY 423 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~ 423 (860)
..........-+|+..+.|+.++ .+..||..+..-... +....... ++ ..-+++..+.|+ .+.+||..+.
T Consensus 351 ~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 351 KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCCC
Confidence 11111112223677777777653 467888765533221 11111111 22 223555555553 5678887654
Q ss_pred ceeeEeeCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEECCCCc
Q 038577 424 RNFRTFTTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWSMKTGR 468 (860)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d~~~~~ 468 (860)
+=...-..+.+..-.+++ .-+|+..++|+.++ ..+..||..+++
T Consensus 426 ~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 322211112211112222 23566666666442 145566655443
No 444
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=4.5 Score=38.86 Aligned_cols=263 Identities=11% Similarity=-0.008 Sum_probs=137.9
Q ss_pred CCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCc---eEEEEecCcccCe
Q 038577 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSE---SYILKQQGHYFDV 352 (860)
Q Consensus 276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~---~~~~~~~~~~~~v 352 (860)
+++...+..+.-++++|+.+......+..-.-.-..-.+.-.|++..++.-++| +.+.|+.+. ....+.......-
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddg-fLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDG-FLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCc-EEEEECCCCCCceeeeeeccCCCCc
Confidence 456777778888999999876655444332222334455667888877765544 556666543 3333333334444
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCee---EEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEe
Q 038577 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFC---FVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTF 429 (860)
Q Consensus 353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~ 429 (860)
..++.| |++-..+..|+-+.+.|+..... +... .....+.++..+++..+++.. +--+.+-|..+.+....+
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~ 249 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVF 249 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEe
Confidence 566665 56777778899999999875432 2222 223367788777765444443 334666777666655544
Q ss_pred eCCCCCcEEEE-EECCCCCEEEEEecCCCeEEEEECCCCc---eEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038577 430 TTPSSRQFVSL-ASDQSGEVICAGTLDSFEIFVWSMKTGR---LLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWN 505 (860)
Q Consensus 430 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~i~v~d~~~~~---~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd 505 (860)
..-....+.+. .+.-.+++..+...+. -+.+.|..+.. ....+......-..+..+ +.++..+..+ +..+-+
T Consensus 250 gsyet~~p~~~s~v~Vs~~~~Yvadga~-gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn-~g~vV~ 325 (370)
T COG5276 250 GSYETSNPVSISTVPVSGEYAYVADGAK-GLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKN-TGAVVD 325 (370)
T ss_pred eccccCCcccccceecccceeeeecccc-CceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCC-ceEEEe
Confidence 43332222222 2223344444444444 34444443211 111111111112222221 2333333332 334445
Q ss_pred ccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeC
Q 038577 506 VFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDP 548 (860)
Q Consensus 506 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 548 (860)
....+...........+.+...+-+.+.+.+...++.+.+|+.
T Consensus 326 ~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 326 ASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred CCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 4443333333333334455555556668888888999999975
No 445
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.51 E-value=1.9 Score=43.01 Aligned_cols=168 Identities=11% Similarity=0.087 Sum_probs=93.5
Q ss_pred CeEEEEECCCCcEEeecc-C-----CccCeeEEEEcCCC----CEEEEEcC--CCcEEEEEcccCeEEEEeec-------
Q 038577 32 NRVSVTDLIKSKTVTLPV-E-----SSSNICRIAVSPDG----TFLLTVDE--NQRCHFINLHCHVVLHRVRF------- 92 (860)
Q Consensus 32 ~~i~v~d~~~~~~~~~~~-~-----h~~~v~~va~spdg----~~la~~~~--d~~i~vwd~~~~~~~~~~~~------- 92 (860)
-+|.+||+.+++..+... + ..+.+..+++.... +..|..+. .+-+.|+|+.+++..+...+
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 479999999999854321 1 23557778777622 23444332 46899999999887665541
Q ss_pred -------------CCceeEEEECC---CCCEEEEEeCCeEEEEeCCC-----CCcccce--eEEEEEeeccCCCeEEEEE
Q 038577 93 -------------KYPVNAILFSP---NGKYIAVGTGKLVQIWRSPG-----FKKEVFA--FELIRTLADCNDKVTALNW 149 (860)
Q Consensus 93 -------------~~~v~~~~fsp---dg~~la~~~~~~i~iwd~~~-----~~~~~~~--~~~~~~~~~h~~~v~~l~~ 149 (860)
...+..++.+| ||+.|....-..-.+|.+++ ....... ...+..+.........+++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 23366677765 77778777444444444432 1100000 0011222111245678899
Q ss_pred cCCCCeEEEeecCCeEEEEeecccccCcccccceEeec--C-CCcEEEEEEcc--CCC
Q 038577 150 SPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLG--H-RDSVVGCFFSV--DKK 202 (860)
Q Consensus 150 s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~--h-~~~i~~~~~~~--~~~ 202 (860)
+++|...++--..+.|..|+....... .....+.. . -..+.++.+.+ ++.
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~---~~~~~l~~d~~~l~~pd~~~i~~~~~g~ 248 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTP---ENFEILAQDPRTLQWPDGLKIDPEGDGY 248 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-G---CCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCc---cchheeEEcCceeeccceeeeccccCce
Confidence 999998888888999999998874111 11122221 1 34677788877 554
No 446
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.47 E-value=5.1 Score=38.93 Aligned_cols=235 Identities=10% Similarity=0.077 Sum_probs=126.1
Q ss_pred eeEEEECCCCCEEEEE-eCCeEEEEeCCCCCcccceeEEEEEeec-----cCCCeEEEEEcCCCCe------------EE
Q 038577 96 VNAILFSPNGKYIAVG-TGKLVQIWRSPGFKKEVFAFELIRTLAD-----CNDKVTALNWSPDSNY------------LL 157 (860)
Q Consensus 96 v~~~~fspdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~------------l~ 157 (860)
-..|+|+|.+.+-++. ..+...+||.........+..++..+.. .....+.+.|+....+ ++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4679999988666655 7789999998722111112224444442 2345788888754333 56
Q ss_pred EeecCCeEEEEeecccccCcccccceEee-cCCCc-EEEEEEccC--CCCCccceEEEEc-CCccEEEeeecCCCCCCcc
Q 038577 158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLL-GHRDS-VVGCFFSVD--KKTDKVNRIYTIA-RDCYMFSWGFSGNDGKIDE 232 (860)
Q Consensus 158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~-~h~~~-i~~~~~~~~--~~~~~~~~l~s~~-~dg~i~~w~~~~~~~~~~~ 232 (860)
.+++||+|.-|...-....+. .....+. +..+. ...+++... +. +|+.+. ..++|.++|-.-.......
T Consensus 105 f~tEdGTisaW~p~v~~t~~~-~~~~~~d~s~~gavYkGLAi~~~~~~~-----~LYaadF~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMT-RAEIVVDASQQGNVYKGLAVGPTGGGD-----YLYAANFRQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred EEeCCceEEeecCcCCccccc-ccEEEEccCCCcceeeeeEEeecCCCc-----eEEEeccCCCceEEecCccccccCCC
Confidence 778999999998654411000 0112221 11233 345666543 33 566554 5788999976654322111
Q ss_pred ccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeec--CceeE
Q 038577 233 TMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSIS--REKIT 310 (860)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~--~~~i~ 310 (860)
...++..+..- ..+.++.. +..-.|+-..-.++...=+.|...|.|-+||. ++..++.+... -....
T Consensus 179 ~F~DP~iPagy------APFnIqni----g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPW 247 (336)
T TIGR03118 179 SFIDPALPAGY------APFNVQNL----GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPW 247 (336)
T ss_pred CccCCCCCCCC------CCcceEEE----CCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCc
Confidence 11111111111 11111110 00111222223344444445566689999998 67777766332 23445
Q ss_pred EEEEee-----CCCEEEEEEccCCcEEEEEccCceEEEEecC
Q 038577 311 TAVFNE-----LGNWLVFGCAKLGQLLVWEWRSESYILKQQG 347 (860)
Q Consensus 311 ~~~~s~-----~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~ 347 (860)
.++..| -...|+++.--||+|..+|..+++.+..+..
T Consensus 248 G~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 248 GLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred eeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 565544 2345566666679999999999888777654
No 447
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.29 E-value=0.4 Score=54.24 Aligned_cols=183 Identities=10% Similarity=-0.014 Sum_probs=109.2
Q ss_pred EEEecCCCCEEEEEEcCCeEEEEECCCc----------------eeEEEEeec-CceeEEEEEeeCCCEEEEEEccC-Cc
Q 038577 269 ACDYHRGLDMVVVGFSNGVFGLYQMPDF----------------VCIHLLSIS-REKITTAVFNELGNWLVFGCAKL-GQ 330 (860)
Q Consensus 269 ~~~~~~~~~~l~~~~~~g~i~~~~~~~~----------------~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~~~~-g~ 330 (860)
.++.++.-..++++...+.+.++-..+. .....+..+ .-.+..+...+|+...++....+ -.
T Consensus 46 ~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~ 125 (1405)
T KOG3630|consen 46 NLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEA 125 (1405)
T ss_pred hhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCce
Confidence 3444555555666666665555543211 111222222 23566777778887776665553 36
Q ss_pred EEEEEccCceEEE-----EecC------cccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577 331 LLVWEWRSESYIL-----KQQG------HYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398 (860)
Q Consensus 331 i~v~d~~~~~~~~-----~~~~------~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 398 (860)
|..||+++-.... .+.. ......++.|+|.-. ..++...|+.|++..+........-.......++++
T Consensus 126 v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~ 205 (1405)
T KOG3630|consen 126 VYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVL 205 (1405)
T ss_pred EEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEE
Confidence 7889987532211 1111 122356778887532 355667788888887653322222223566789999
Q ss_pred EeeCCCEEEEEeCCCcEEEEEccccceeeEee---CCCCCcEEEEEECCCCCEEEEE
Q 038577 399 FMANNHSLLSASLDGTVRAWDLFRYRNFRTFT---TPSSRQFVSLASDQSGEVICAG 452 (860)
Q Consensus 399 ~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~ 452 (860)
|+|.|+.++.|-..|++.-|... .+..+.+. ......+.+++|-....++++-
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 99999999999999999988753 33223332 2234578888888777777653
No 448
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.20 E-value=9 Score=40.65 Aligned_cols=111 Identities=11% Similarity=0.101 Sum_probs=62.4
Q ss_pred ceecccccccccCCcEEEe-CCCEEEeee-CCeEEEEECCCCcEEee--cc-----CCccCeeEEEEcCCC------CEE
Q 038577 3 YRFQNLLGAPYRGGNAVLS-QNTKLISPV-GNRVSVTDLIKSKTVTL--PV-----ESSSNICRIAVSPDG------TFL 67 (860)
Q Consensus 3 ~~~~~~~g~~~~~~~~~~s-dg~~l~~~~-~~~i~v~d~~~~~~~~~--~~-----~h~~~v~~va~spdg------~~l 67 (860)
|+...+....-..-.++|. ||+.|++-. .++|++++..++..... +. ........|+++|+- .+|
T Consensus 20 f~~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l 99 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV 99 (454)
T ss_pred cEEEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence 3444333334444568999 998888876 59999998766543211 11 124668999999985 233
Q ss_pred EEE--c--------CCCcEEEEEcccC-------eEE-EEee--cCCceeEEEECCCCCEEEEEeC
Q 038577 68 LTV--D--------ENQRCHFINLHCH-------VVL-HRVR--FKYPVNAILFSPNGKYIAVGTG 113 (860)
Q Consensus 68 a~~--~--------~d~~i~vwd~~~~-------~~~-~~~~--~~~~v~~~~fspdg~~la~~~~ 113 (860)
... . ....|.-|.+... +.+ ..+. ....-..|+|.|||.+.++.+|
T Consensus 100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 332 1 1234444544321 111 1111 1123457889999987776544
No 449
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.20 E-value=0.11 Score=56.94 Aligned_cols=90 Identities=17% Similarity=0.311 Sum_probs=54.0
Q ss_pred CcEEEEEccC--ceEEEEe-----cCcccCeEEEEEcC---CCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEE
Q 038577 329 GQLLVWEWRS--ESYILKQ-----QGHYFDVNCLAYSP---DSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALH 398 (860)
Q Consensus 329 g~i~v~d~~~--~~~~~~~-----~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~ 398 (860)
|.+.||++.- |+....+ ......+.-+.|.| +..++..+..++.+++.+.++... ..+.+|...+..++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 7888998753 3322222 22233345555554 556777788889999887764433 34455777766665
Q ss_pred E-----------eeCCCEEEEEeCCCcEEEEE
Q 038577 399 F-----------MANNHSLLSASLDGTVRAWD 419 (860)
Q Consensus 399 ~-----------~~~~~~l~s~~~dg~i~~wd 419 (860)
+ +|||..++.+..||.+++|.
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 4 56666666666666666654
No 450
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.11 E-value=2.4 Score=45.78 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=57.4
Q ss_pred ECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeEEEEEeeCCCEEEEEeCCCe
Q 038577 463 SMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVLTVVYRPDGRQLACSTLDGQ 542 (860)
Q Consensus 463 d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 542 (860)
|+-.|.....+ .|.+.|.-+.....+..|..-...-.+.++|+.+.+....+ .-.+-+.|-|....++.-+.|.
T Consensus 324 dli~g~~~~~i-nh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~dn- 397 (1636)
T KOG3616|consen 324 DLIGGQNEGFI-NHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGDN- 397 (1636)
T ss_pred ecccCcccccc-cccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCCc-
Confidence 44444444333 38888887887776666766666667888998776522211 1245578888877777666665
Q ss_pred EEEE-eCCCCceeEEEeccc
Q 038577 543 IHFW-DPLNGELMYTIEGRR 561 (860)
Q Consensus 543 i~iw-d~~~~~~~~~~~~~~ 561 (860)
+.|| ++.-.+.+..+....
T Consensus 398 l~iwyn~d~peqvt~~kikg 417 (1636)
T KOG3616|consen 398 LCIWYNIDAPEQVTMFKIKG 417 (1636)
T ss_pred eEEEecCCcchhheeeEecc
Confidence 5555 566666655554443
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.89 E-value=1.3 Score=45.55 Aligned_cols=148 Identities=16% Similarity=0.251 Sum_probs=92.5
Q ss_pred EEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCC--------CEEEEEeCCCcEEEEEccCCcc
Q 038577 440 LASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTN--------ATLASSSWDKTVRLWNVFEGKG 511 (860)
Q Consensus 440 ~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~--------~~l~s~~~dg~i~iwd~~~~~~ 511 (860)
+....+..+++..+.....++-.|+..|+.+.....|... -+.|.|+. +.|+-.| +..|.-.|.+-...
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCC
Confidence 4455667777766555558899999999999999877765 46777753 2344444 55455555543221
Q ss_pred eeEEcccCCCeEEEEEee----CCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEE
Q 038577 512 SVESFPHTHDVLTVVYRP----DGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTL 587 (860)
Q Consensus 512 ~~~~~~~~~~v~~~~~s~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 587 (860)
.........-++.-.||. ...++|+++..|.|++||--.-+....+++- +..|..+
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~l--------------------G~aIk~i 609 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGL--------------------GDAIKHI 609 (776)
T ss_pred ceeeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCccc--------------------ccceeee
Confidence 222222222222223332 4558999999999999996443333333333 3469999
Q ss_pred EEecCCCEEEEecCCCeEEEEECC
Q 038577 588 CYSADGSYILAGGSSKYICMYDVA 611 (860)
Q Consensus 588 ~~s~~g~~l~~~~~dg~v~vwd~~ 611 (860)
..+.+|+++++.+.. ++.+-|++
T Consensus 610 dvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 610 DVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred EeecCCcEEEEeecc-eEEEEecc
Confidence 999999999877654 46666654
No 452
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.88 E-value=6.1 Score=37.59 Aligned_cols=182 Identities=12% Similarity=0.075 Sum_probs=113.5
Q ss_pred cEEEe-CCCEEEeeeC-CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEE-ee--
Q 038577 17 NAVLS-QNTKLISPVG-NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHR-VR-- 91 (860)
Q Consensus 17 ~~~~s-dg~~l~~~~~-~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~-~~-- 91 (860)
.++-+ ||..-+++.+ +.|--.|..+|+......+....-..|..-|||..-++-+.. -|.-.|-++.+..+- +.
T Consensus 66 dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~ 144 (353)
T COG4257 66 DVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLE 144 (353)
T ss_pred ccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccc
Confidence 35666 8876666655 457777999999988888888888999999999866654322 455556555543321 11
Q ss_pred -cCCceeEEEECCCCCEEEEEe----------CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEEEee
Q 038577 92 -FKYPVNAILFSPNGKYIAVGT----------GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLLVGS 160 (860)
Q Consensus 92 -~~~~v~~~~fspdg~~la~~~----------~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~s~~ 160 (860)
.........|.++|.+-.++. .+.|++|+...+. .-..|+..|||..-++.-
T Consensus 145 ~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-----------------gpyGi~atpdGsvwyasl 207 (353)
T COG4257 145 HADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-----------------GPYGICATPDGSVWYASL 207 (353)
T ss_pred cCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-----------------CCcceEECCCCcEEEEec
Confidence 345688899999999888872 3466777665433 236788889998777766
Q ss_pred cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577 161 KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG 225 (860)
Q Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 225 (860)
.+..|-.-|...+ .. .....-......-..+.-+|-+. .-++....+.+..+|...
T Consensus 208 agnaiaridp~~~-~a---ev~p~P~~~~~gsRriwsdpig~-----~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 208 AGNAIARIDPFAG-HA---EVVPQPNALKAGSRRIWSDPIGR-----AWITTWGTGSLHRFDPSV 263 (353)
T ss_pred cccceEEcccccC-Cc---ceecCCCcccccccccccCccCc-----EEEeccCCceeeEeCccc
Confidence 6666666665554 11 11111111122223344445554 555555556666666554
No 453
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.84 E-value=0.32 Score=45.99 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=52.1
Q ss_pred EcCCCCEEEEEcCCCcEEEEEcccCeEEEEe---------------ecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCC
Q 038577 60 VSPDGTFLLTVDENQRCHFINLHCHVVLHRV---------------RFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGF 124 (860)
Q Consensus 60 ~spdg~~la~~~~d~~i~vwd~~~~~~~~~~---------------~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~ 124 (860)
+..++.+|.+.+.+|.+++||+.+++.+..- .....|..+.++.+|.-|++-.+|..+.|+.+-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 5567889999999999999999998876554 1235688888898898888888888888886643
No 454
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=4.7 Score=36.58 Aligned_cols=162 Identities=11% Similarity=0.107 Sum_probs=92.9
Q ss_pred CcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEE
Q 038577 329 GQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-LLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLL 407 (860)
Q Consensus 329 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~ 407 (860)
..|++||+.+++.+....-....+..=-...-|. +-+..-.+|.-..+|.++-+++..+. ..+.=+.++ .|+..|+
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgLt--~d~~~Li 144 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGLT--SDDKNLI 144 (262)
T ss_pred ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceeee--cCCcceE
Confidence 6799999999887766532211121111111122 22334567888899988887777664 334445555 3555677
Q ss_pred EEeCCCcEEEEEccccceeeEeeCCCCC----cEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEec---------
Q 038577 408 SASLDGTVRAWDLFRYRNFRTFTTPSSR----QFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILS--------- 474 (860)
Q Consensus 408 s~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~--------- 474 (860)
.+....+++.-|..+.....++...... .+..+.+ -+|...|-.-... .|...|.++|+.+..+.
T Consensus 145 msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~-~I~rI~p~sGrV~~widlS~L~~~~~ 222 (262)
T COG3823 145 MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTT-RIARIDPDSGRVVAWIDLSGLLKELN 222 (262)
T ss_pred eeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeec-ceEEEcCCCCcEEEEEEccCCchhcC
Confidence 7766667888787765554443322111 1112222 1444444444444 67777778887766543
Q ss_pred ---CcccCeEEEEEcCCC-CEEEEE
Q 038577 475 ---GHEGPVHGLVFSPTN-ATLASS 495 (860)
Q Consensus 475 ---~h~~~v~~l~~s~~~-~~l~s~ 495 (860)
.|..-.+.+++.|++ +++++|
T Consensus 223 ~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 223 LDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred ccccccccccceeecCcCCeEEEec
Confidence 244567889999987 445554
No 455
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.64 E-value=2 Score=48.53 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=58.9
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCC-CceeEEEecccccCCCccccccccccccCCCCcEEEEEEecC---C
Q 038577 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLN-GELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSAD---G 593 (860)
Q Consensus 518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~---g 593 (860)
..-.|..+.++|+|++|+..+..| |.|-.+.. .-....+.+.......+..........+..+..|..+.|.|. +
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 445789999999999999999876 45544432 111111211111111111111111222334557999999997 4
Q ss_pred CEEEEecCCCeEEEEECCCce
Q 038577 594 SYILAGGSSKYICMYDVADQV 614 (860)
Q Consensus 594 ~~l~~~~~dg~v~vwd~~~~~ 614 (860)
..|++-.+|+++++||+....
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CeEEEEecCCEEEEEecCCCC
Confidence 799999999999999997643
No 456
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.38 E-value=0.077 Score=57.93 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=61.0
Q ss_pred cCCceeEEEEC----CCCCEEEEEeCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcC---CCCeEEEeecCCe
Q 038577 92 FKYPVNAILFS----PNGKYIAVGTGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSP---DSNYLLVGSKDLA 164 (860)
Q Consensus 92 ~~~~v~~~~fs----pdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~s~~~dg~ 164 (860)
+.+.|-.++|- |.+.. .-|.+.||++.--+....+-..+.........+.-+.|.| +..++..+-.+++
T Consensus 131 f~G~v~dl~fah~~~pk~~~----~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR----LVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred CCCCcccccccccCChHHHH----HhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 57788888884 33332 2367889988753333333223333333344445555554 5567777778889
Q ss_pred EEEEeecccccCcccccceEeecCCCcEEEEEEccCC
Q 038577 165 VRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDK 201 (860)
Q Consensus 165 v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~ 201 (860)
+++...... ....+.+|...+..++|...|
T Consensus 207 i~lL~~~ra-------~~~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 207 IRLLNINRA-------LRSLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred eeEeeechH-------HHHHHHhcCCCcccHHHHhhc
Confidence 988887765 224556688888888776555
No 457
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.03 E-value=11 Score=37.74 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=86.6
Q ss_pred cEEEEEccccceeeEeeCCC-----CCcEEEEEECCCC-----CEEEEEecCCCeEEEEECCCCceEEEecCc-------
Q 038577 414 TVRAWDLFRYRNFRTFTTPS-----SRQFVSLASDQSG-----EVICAGTLDSFEIFVWSMKTGRLLDILSGH------- 476 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-----~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h------- 476 (860)
+|.+||+.+.+.++.+..+. ...+..+.++... .++.++......|.+||+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 68889999999888877653 3457777776632 466677666668999999998776665432
Q ss_pred ------------ccCeEEEEEcC---CCCEEEEEeCCCcEEEEEccCC-----c----c----eeEEccc-CCCeEEEEE
Q 038577 477 ------------EGPVHGLVFSP---TNATLASSSWDKTVRLWNVFEG-----K----G----SVESFPH-THDVLTVVY 527 (860)
Q Consensus 477 ------------~~~v~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~-----~----~----~~~~~~~-~~~v~~~~~ 527 (860)
...+..++.+| ++++|......+ -++|.+.+. . . ..+..+. ......+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12366667665 666676655443 234443221 1 0 1112222 246677899
Q ss_pred eeCCCEEEEEeCCCeEEEEeCCC
Q 038577 528 RPDGRQLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 528 s~~~~~l~~~~~dg~i~iwd~~~ 550 (860)
+++|.+.++--..+.|..|+..+
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTT
T ss_pred CCCCcEEEecCCCCeEEEEeCCC
Confidence 99999888888899999999876
No 458
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.01 E-value=13 Score=38.88 Aligned_cols=107 Identities=9% Similarity=0.066 Sum_probs=62.5
Q ss_pred CCceEEEEecCCCCEEEEEEcCCeEEEEECCCce-----eEEEEee--cCceeEEEEEeeCCCEEEEEEccCCcEEEEEc
Q 038577 264 PSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFV-----CIHLLSI--SREKITTAVFNELGNWLVFGCAKLGQLLVWEW 336 (860)
Q Consensus 264 ~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~-----~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~ 336 (860)
...+..+.+.+++..++++ ..|.+.. ....++ ....... ....+..+.|.+++..++++.. |.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~--G~v~~s~- 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS--GILLRST- 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC--CcEEEeC-
Confidence 4568889999998877666 4455433 333333 2222222 2235888999988877666543 6665553
Q ss_pred cCceEEEEe---cCcccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038577 337 RSESYILKQ---QGHYFDVNCLAYSPDSQLLATGADDNKVKVW 376 (860)
Q Consensus 337 ~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 376 (860)
..++.-... ..-....+.+.|.++++-+++| .+|.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 333322221 2234567889988877666655 45776554
No 459
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.98 E-value=12 Score=38.36 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=105.4
Q ss_pred CEEEeee--CCeEEEEECCCCcEEeeccCCccCe---eEEEEcCCCCE--EEEEcC-C---CcEEEEEcc--cCeEEEEe
Q 038577 24 TKLISPV--GNRVSVTDLIKSKTVTLPVESSSNI---CRIAVSPDGTF--LLTVDE-N---QRCHFINLH--CHVVLHRV 90 (860)
Q Consensus 24 ~~l~~~~--~~~i~v~d~~~~~~~~~~~~h~~~v---~~va~spdg~~--la~~~~-d---~~i~vwd~~--~~~~~~~~ 90 (860)
+.++.+. .+-+.+||+...+...+..+.-..| ..+.+ +|+. ||.++. + .+|.+|.+. ++. +..+
T Consensus 68 kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred cceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 3344443 3569999999888877755544333 22333 4443 455443 2 569999775 443 3333
Q ss_pred e-c-------CCceeEEEE--CC-CCCEEEEE--eCCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeEE
Q 038577 91 R-F-------KYPVNAILF--SP-NGKYIAVG--TGKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYLL 157 (860)
Q Consensus 91 ~-~-------~~~v~~~~f--sp-dg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l~ 157 (860)
. . -..+..+|+ +| +|++.|.. .+|.+.-|.+...........+++.+.. ...+..++......+|+
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLY 223 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEE
Confidence 2 1 123566666 44 56665555 6688888887533222233456777765 34788889988888999
Q ss_pred EeecCCeEEEEeecccccCcccccceEee--cCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeecC
Q 038577 158 VGSKDLAVRLFYVKEKLKGIHTNKPFLLL--GHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFSG 225 (860)
Q Consensus 158 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~~ 225 (860)
.+-++.-|.-|+.+.. ............ +....|..+++-.... .....|+|.-.+++..+|+.+.
T Consensus 224 vgEE~~GIW~y~Aep~-~~~~~~~v~~~~g~~l~aDvEGlaly~~~~-g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPE-GGNDRTLVASADGDGLVADVEGLALYYGSD-GKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEETTTEEEEEESSCC-C-S--EEEEEBSSSSB-S-EEEEEEEE-CC-C-EEEEEEEGGGTEEEEEESST
T ss_pred EecCccEEEEEecCCC-CCCcceeeecccccccccCccceEEEecCC-CCeEEEEEcCCCCeEEEEecCC
Confidence 9988876666666543 111111111122 2456788888754321 1122455555677899998875
No 460
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.97 E-value=0.44 Score=30.61 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=26.6
Q ss_pred cCeeEEEEcCCC---CEEEEEcCCCcEEEEEcccC
Q 038577 53 SNICRIAVSPDG---TFLLTVDENQRCHFINLHCH 84 (860)
Q Consensus 53 ~~v~~va~spdg---~~la~~~~d~~i~vwd~~~~ 84 (860)
+.|.++.|||+. .+||.+-..+.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 58888888899999999853
No 461
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.85 E-value=6.1 Score=37.81 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=80.2
Q ss_pred EEEEEccCceEEEEecCcccCeEEEEEcCCCCEEEEEeC-C--CcEEEEECCC---CeeEEEe---ecCCCceEEEEEee
Q 038577 331 LLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLLATGAD-D--NKVKVWTVSS---GFCFVTF---TEHTNAVTALHFMA 401 (860)
Q Consensus 331 i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d--g~i~iwd~~~---~~~~~~~---~~~~~~v~~i~~~~ 401 (860)
-.+||+.+++..........-+.+-++.+||+.+.+|+. + ..+++++... .....+. -.....-......+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 457888887654432222323334457789999998876 2 3578887654 1111111 01122233445568
Q ss_pred CCCEEEEEeCCCc-EEEEEcccc-ceeeEe--e-----CCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEE
Q 038577 402 NNHSLLSASLDGT-VRAWDLFRY-RNFRTF--T-----TPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDI 472 (860)
Q Consensus 402 ~~~~l~s~~~dg~-i~~wd~~~~-~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~ 472 (860)
||+.++.||.... ..+|.-... .....+ . .....-...+...|+|++++.+..+ -.+||..+.+.++.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~---s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG---SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC---cEEEeCCCCeEEee
Confidence 9999999988753 344443211 111111 1 0112233467788999999888865 46778888877666
Q ss_pred ecC
Q 038577 473 LSG 475 (860)
Q Consensus 473 ~~~ 475 (860)
+..
T Consensus 205 lP~ 207 (243)
T PF07250_consen 205 LPD 207 (243)
T ss_pred CCC
Confidence 654
No 462
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=92.79 E-value=18 Score=39.86 Aligned_cols=250 Identities=11% Similarity=0.102 Sum_probs=121.5
Q ss_pred ecCCCCEEEEEEcCCeEEEEECCCcee---EEEEeecCceeEEEEEeeCC-CEEEEEEc-cCCcEEEEEccCceEEEEec
Q 038577 272 YHRGLDMVVVGFSNGVFGLYQMPDFVC---IHLLSISREKITTAVFNELG-NWLVFGCA-KLGQLLVWEWRSESYILKQQ 346 (860)
Q Consensus 272 ~~~~~~~l~~~~~~g~i~~~~~~~~~~---~~~~~~~~~~i~~~~~s~~~-~~l~~~~~-~~g~i~v~d~~~~~~~~~~~ 346 (860)
...++..++.+..+|.+....+..... +..+..-.....++.+-.+| ..+++++. .|+.+..|....-+.+..+.
T Consensus 218 ~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 218 YDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred ecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 456778899999999999988765441 12221113455677777776 24444433 34556666644445555544
Q ss_pred CcccCeEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCee--EEEeecCC--CceEEEEEee-CCCEEEE
Q 038577 347 GHYFDVNCLAYSPD----SQ------LLATGA---DDNKVKVWTVSSGFC--FVTFTEHT--NAVTALHFMA-NNHSLLS 408 (860)
Q Consensus 347 ~~~~~v~~~~~s~~----~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~--~~v~~i~~~~-~~~~l~s 408 (860)
.-++|..+++.+. .. .+++++ .+|.+++..-.-+-. ......-. ..++.+.... +..+++.
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 3467888887531 11 555554 367888875322211 11222222 2333333222 1346666
Q ss_pred EeCCCcEEEEEcc---ccceeeEeeC---CC-CCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC-cccCe
Q 038577 409 ASLDGTVRAWDLF---RYRNFRTFTT---PS-SRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG-HEGPV 480 (860)
Q Consensus 409 ~~~dg~i~~wd~~---~~~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~-h~~~v 480 (860)
+..+ .-+++.+. ....+..... .. ...+.+..+. +..++=.+.. .|++.+...++....... ....|
T Consensus 377 S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~--~i~l~~~~~~~~~~~w~~~~~~~I 451 (504)
T PF10433_consen 377 SFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK--GIRLIDLEDGKLTQEWKPPAGSII 451 (504)
T ss_dssp EESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS--EEEEEESSSTSEEEEEE-TTS---
T ss_pred EcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC--eEEEEECCCCeEEEEEeCCCCCeE
Confidence 6554 44555553 2222222211 11 1112222222 3333333333 588888887777766532 34455
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-----ccCCCeEEEEEee
Q 038577 481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-----PHTHDVLTVVYRP 529 (860)
Q Consensus 481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~s~ 529 (860)
.+.+. ++.+++.+-.++.+..+.+.......... .....|.++..+|
T Consensus 452 ~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 452 VAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 55555 44667777778889999987776433322 2567788887766
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.65 E-value=3.4 Score=42.78 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=91.3
Q ss_pred eeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCC-------EEEEEeCCCcEEEEECCC-CeeEEE
Q 038577 315 NELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQ-------LLATGADDNKVKVWTVSS-GFCFVT 386 (860)
Q Consensus 315 s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~l~~~~~dg~i~iwd~~~-~~~~~~ 386 (860)
..+...+...+.....++-.|++.|+.+..+..|... -+.|.|+.+ .-++|-.+..|.-.|.+- |..+..
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 3455555555555578888999999999998877664 567777432 233455555665556542 322221
Q ss_pred ee--c--CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEE
Q 038577 387 FT--E--HTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVW 462 (860)
Q Consensus 387 ~~--~--~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~ 462 (860)
.. . ......+..-.. ..+++.++..|.|++||--. ...++....-...+..+..+.+|+++++.+.. .+.+.
T Consensus 554 ~esKdY~tKn~Fss~~tTe-sGyIa~as~kGDirLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~--yllL~ 629 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTE-SGYIAAASRKGDIRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATCKN--YLLLT 629 (776)
T ss_pred eeehhcccccccccccccc-CceEEEecCCCceeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEeecc--eEEEE
Confidence 11 0 112222332233 34899999999999999543 33333333445578889999999999988876 67777
Q ss_pred ECC
Q 038577 463 SMK 465 (860)
Q Consensus 463 d~~ 465 (860)
|+.
T Consensus 630 d~~ 632 (776)
T COG5167 630 DVP 632 (776)
T ss_pred ecc
Confidence 765
No 464
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=92.58 E-value=15 Score=38.53 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=25.5
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCeeEEEeecCCCce--EEEEEeeCCCEEEEEeCC
Q 038577 360 DSQLLATGADD-----------NKVKVWTVSSGFCFVTFTEHTNAV--TALHFMANNHSLLSASLD 412 (860)
Q Consensus 360 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v--~~i~~~~~~~~l~s~~~d 412 (860)
++.+.+.|+.. ..+..||..+..-...-....... .+.....+++..+.||.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 56666777643 247778876653222111001111 111221466777777754
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.58 E-value=5.6 Score=33.44 Aligned_cols=108 Identities=10% Similarity=0.062 Sum_probs=70.2
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEEccc--------CeEEEEeecCCceeEEEECC-----CCCEEEEEeCCeEEEEeCCCC
Q 038577 58 IAVSPDGTFLLTVDENQRCHFINLHC--------HVVLHRVRFKYPVNAILFSP-----NGKYIAVGTGKLVQIWRSPGF 124 (860)
Q Consensus 58 va~spdg~~la~~~~d~~i~vwd~~~--------~~~~~~~~~~~~v~~~~fsp-----dg~~la~~~~~~i~iwd~~~~ 124 (860)
-.|......|+.++..|.|.|.+... ...++.+.....|++++-.| +...|.+|....+..||+...
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N 83 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENN 83 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccC
Confidence 34555556788888889999998663 34566677788888886543 457899999999999999876
Q ss_pred CcccceeEEEEEeeccCCCeEEEEEcC---CCCeEEEeecCCeEEEEeeccc
Q 038577 125 KKEVFAFELIRTLADCNDKVTALNWSP---DSNYLLVGSKDLAVRLFYVKEK 173 (860)
Q Consensus 125 ~~~~~~~~~~~~~~~h~~~v~~l~~s~---d~~~l~s~~~dg~v~vwd~~~~ 173 (860)
... -.+.-.+.|.++.+-. ...-|+..+.+..|.-+|.+..
T Consensus 84 ~d~--------Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 84 SDL--------FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred chh--------hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 531 1223346677776632 1223444444556666665543
No 466
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=92.32 E-value=16 Score=37.99 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=26.3
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCeeEEEeecCCCceEEE-EE-eeCCCEEEEEeCC
Q 038577 360 DSQLLATGADD-----------NKVKVWTVSSGFCFVTFTEHTNAVTAL-HF-MANNHSLLSASLD 412 (860)
Q Consensus 360 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~v~~i-~~-~~~~~~l~s~~~d 412 (860)
++++.+.|+.+ ..+..||..+..-.............. +. .-+++..+.||.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56677777753 246778876654322111111111111 11 3467777777764
No 467
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=92.31 E-value=14 Score=37.32 Aligned_cols=100 Identities=12% Similarity=0.086 Sum_probs=62.9
Q ss_pred CCCEEEeeeCCeEEEEECCC--CcEEeeccCCccCeeEEEEcCCCCEEEEEcC-CCcEEEEEcccCeE------------
Q 038577 22 QNTKLISPVGNRVSVTDLIK--SKTVTLPVESSSNICRIAVSPDGTFLLTVDE-NQRCHFINLHCHVV------------ 86 (860)
Q Consensus 22 dg~~l~~~~~~~i~v~d~~~--~~~~~~~~~h~~~v~~va~spdg~~la~~~~-d~~i~vwd~~~~~~------------ 86 (860)
++++|+.|++..|.+.++.. ++....+ +...|+++.+.+.-+.|++.+. ...++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 12 DGKWLLVGTEEGLYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CCcEEEEEeCCceEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 55799999998888888765 3444443 6779999999998888877653 34599999843221
Q ss_pred ----EEEeecCCceeEEEEC--CCCCEEEEEeCCeEEEEeCCC
Q 038577 87 ----LHRVRFKYPVNAILFS--PNGKYIAVGTGKLVQIWRSPG 123 (860)
Q Consensus 87 ----~~~~~~~~~v~~~~fs--pdg~~la~~~~~~i~iwd~~~ 123 (860)
...+.+.....-.+.. +.-.+++++....|.++.+..
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~ 132 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYN 132 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccC
Confidence 1222233322222332 222345555677888876543
No 468
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.16 E-value=4.3 Score=44.65 Aligned_cols=130 Identities=12% Similarity=0.124 Sum_probs=75.8
Q ss_pred EEEeeccCCCeEEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEe-ecCCCcEEEEEE--ccCCCCCccceEE
Q 038577 134 IRTLADCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLL-LGHRDSVVGCFF--SVDKKTDKVNRIY 210 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~-~~h~~~i~~~~~--~~~~~~~~~~~l~ 210 (860)
...+..--.....+.-|.-++..++-+....+.|||...+ .....- -...+.|..+.| .|+++ .++
T Consensus 22 t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~------~lE~~~~f~~~~~I~dLDWtst~d~q-----siL 90 (631)
T PF12234_consen 22 TSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSG------VLEYEESFSEDDPIRDLDWTSTPDGQ-----SIL 90 (631)
T ss_pred EEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCc------EEEEeeeecCCCceeeceeeecCCCC-----EEE
Confidence 3344333344555555555554444444567999999887 222111 155788999988 56777 899
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCC-CCceEEEEecCCCCEEEEEEcCCeEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQA-PSKVTACDYHRGLDMVVVGFSNGVFG 289 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~g~i~ 289 (860)
+.|....|.++.-..... ... ...|..........+ +.+|....|.++|..++. + .+.+.
T Consensus 91 aVGf~~~v~l~~Q~R~dy-----------~~~------~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-s-GNqlf 151 (631)
T PF12234_consen 91 AVGFPHHVLLYTQLRYDY-----------TNK------GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-S-GNQLF 151 (631)
T ss_pred EEEcCcEEEEEEccchhh-----------hcC------CcccceeEEEEeecCCCCCccceeEecCCeEEEE-e-CCEEE
Confidence 999999999986432110 000 013333333322232 257889999999865443 3 34567
Q ss_pred EEEC
Q 038577 290 LYQM 293 (860)
Q Consensus 290 ~~~~ 293 (860)
+++-
T Consensus 152 v~dk 155 (631)
T PF12234_consen 152 VFDK 155 (631)
T ss_pred EECC
Confidence 7664
No 469
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.96 E-value=3.2 Score=39.67 Aligned_cols=138 Identities=15% Similarity=0.172 Sum_probs=78.0
Q ss_pred EEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCC---CcEEEEEccc----CeEE---EEeecCCceeEEEECC
Q 038577 34 VSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDEN---QRCHFINLHC----HVVL---HRVRFKYPVNAILFSP 103 (860)
Q Consensus 34 i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d---~~i~vwd~~~----~~~~---~~~~~~~~v~~~~fsp 103 (860)
-.+||+.+++.........-...+=++-|||++|.+|+.. ..+++++..+ ..-. ..+.....-....--|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 5699999999877665444444555788999999988652 4577776543 1111 1122233344455577
Q ss_pred CCCEEEEEeC--CeEEEEeCCCCCcccceeEEEEEee--ccCCCeEEEEEcCCCCeEEEeecCCeEEEEeeccc
Q 038577 104 NGKYIAVGTG--KLVQIWRSPGFKKEVFAFELIRTLA--DCNDKVTALNWSPDSNYLLVGSKDLAVRLFYVKEK 173 (860)
Q Consensus 104 dg~~la~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~s~d~~~l~s~~~dg~v~vwd~~~~ 173 (860)
||+.|++|+. ....+|...........+....... .....--.+...|||+.++.+..+ -.|||..+.
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n 199 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTN 199 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCC
Confidence 9999999833 3445555432211111111111111 111122345668999988888765 456677766
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.96 E-value=4.5 Score=43.86 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=47.7
Q ss_pred CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeCCeEEEEeC
Q 038577 51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTGKLVQIWRS 121 (860)
Q Consensus 51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~~~i~iwd~ 121 (860)
....++++.-+|.|+-++.+..||.|+++++.....-.......|-..+.|...|-+.++ +|..+.-|.-
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~t-sdrr~la~~~ 82 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTAT-SDRRALAWKE 82 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEe-ccchhheeec
Confidence 345578888889999999999999999999887655333334455566777665544433 4555555543
No 471
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.79 E-value=0.016 Score=58.50 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=105.0
Q ss_pred eEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEec
Q 038577 267 VTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQ 346 (860)
Q Consensus 267 v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~ 346 (860)
.....|-|.+.-+++++.+..+..||-... ..... ...+....++|..+|..+++.....+.+.+||+.+......-.
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq-~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ-VILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc-eeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 344566777777999999988888886322 22222 2334566788999999988888888999999987653222111
Q ss_pred CcccCeEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEE
Q 038577 347 GHYFDVNCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRA 417 (860)
Q Consensus 347 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~ 417 (860)
+....-.-+.|++.+..++.+...|.+.+++..+.+.+.....|...++++++.+.+ +.+.++.|..+.+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 211122237899999999999999999999998877777776699999999999877 5566666655443
No 472
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.74 E-value=0.89 Score=29.25 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=26.2
Q ss_pred CCeEEEEEeeCCC---EEEEEeCCCeEEEEeCCC
Q 038577 520 HDVLTVVYRPDGR---QLACSTLDGQIHFWDPLN 550 (860)
Q Consensus 520 ~~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~ 550 (860)
+.+.++.|||+.. +|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998554 888888889999999985
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.72 E-value=17 Score=37.18 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=71.5
Q ss_pred CeeEEEEcCCCCEEEEEcCC------CcEEEEEcccCeEEEEee----------------cCCceeEEEECCCCCEEEEE
Q 038577 54 NICRIAVSPDGTFLLTVDEN------QRCHFINLHCHVVLHRVR----------------FKYPVNAILFSPNGKYIAVG 111 (860)
Q Consensus 54 ~v~~va~spdg~~la~~~~d------~~i~vwd~~~~~~~~~~~----------------~~~~v~~~~fspdg~~la~~ 111 (860)
..-+|++.++|.++++.-.+ ..|..++.. |+.+..+. ......+|+++|||+.|.++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34588888899988887666 788888866 66655442 23457899999999965555
Q ss_pred ------eCC--e-------EEEE--eCCCCCcccceeEEEEEeec-----cCCCeEEEEEcCCCCeEEEe-----ecCCe
Q 038577 112 ------TGK--L-------VQIW--RSPGFKKEVFAFELIRTLAD-----CNDKVTALNWSPDSNYLLVG-----SKDLA 164 (860)
Q Consensus 112 ------~~~--~-------i~iw--d~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~s~d~~~l~s~-----~~dg~ 164 (860)
.++ . ++++ |..+.... ..+....+.. ....|..+.+-+++++|+.= +....
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~ 242 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNY 242 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCcc--ceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccce
Confidence 222 1 4554 44432211 1112223332 45678999999999877652 13445
Q ss_pred EEEEeecc
Q 038577 165 VRLFYVKE 172 (860)
Q Consensus 165 v~vwd~~~ 172 (860)
++|+.+..
T Consensus 243 ~ri~~v~l 250 (326)
T PF13449_consen 243 KRIYRVDL 250 (326)
T ss_pred EEEEEEEc
Confidence 66666553
No 474
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=91.60 E-value=15 Score=42.62 Aligned_cols=87 Identities=9% Similarity=-0.017 Sum_probs=56.1
Q ss_pred cCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE-ecccccCCCccccccccccccCCCCcEEEEEEecCCCEE
Q 038577 518 HTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI-EGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYI 596 (860)
Q Consensus 518 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 596 (860)
....|.++....-+.+++.+-.||+|.++|..+.+.+... ....+. .............+....+..++|||++.-+
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~--~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~ 335 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP--NTVTSLFQAGFHFPCIQPPLHVAFSPTMCSL 335 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc--cccccccccccccccCCCCceEEECcccceE
Confidence 3456777777777889999999999999999998877666 111110 0000000000011111256679999999999
Q ss_pred EEecCCCeEE
Q 038577 597 LAGGSSKYIC 606 (860)
Q Consensus 597 ~~~~~dg~v~ 606 (860)
+.-..+|.+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 9999888765
No 475
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.44 E-value=14 Score=40.09 Aligned_cols=164 Identities=13% Similarity=0.065 Sum_probs=82.2
Q ss_pred eEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccC---CCeEEEEEeeCCCEE
Q 038577 458 EIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHT---HDVLTVVYRPDGRQL 534 (860)
Q Consensus 458 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l 534 (860)
..+++|.. |..+..+.........+...++|.+++..+ ..++.+|+.. +......... .--..+..-|+|++|
T Consensus 129 ~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~~HHD~~~l~nGn~L 204 (477)
T PF05935_consen 129 YTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYDFHHDIDELPNGNLL 204 (477)
T ss_dssp EEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EE
T ss_pred eEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccccccccEECCCCCEE
Confidence 66777754 566555543322222266778898887665 6788888753 3233222111 112456677899999
Q ss_pred EEEeC-------------CCeEEEEeCCCCceeEEEecccccCCCcccc-------ccccccccCCCCcEEEEEEec-CC
Q 038577 535 ACSTL-------------DGQIHFWDPLNGELMYTIEGRRDISGGRLMT-------DRRSAANSSSGKCFTTLCYSA-DG 593 (860)
Q Consensus 535 ~~~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~l~~s~-~g 593 (860)
+.+.. .-.|..+| .+|+.+..+....-....+... ..........=-.++++.+.+ ++
T Consensus 205 ~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd 283 (477)
T PF05935_consen 205 ILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDD 283 (477)
T ss_dssp EEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTT
T ss_pred EEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCC
Confidence 88872 22377788 8999998877655432221100 000000111113589999999 55
Q ss_pred CEEEEecCCCeEEEEECCCceEEEEEeeccccc
Q 038577 594 SYILAGGSSKYICMYDVADQVLLRRFQITHNLS 626 (860)
Q Consensus 594 ~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~ 626 (860)
.+|+++-....|...|..+++....+..+..+.
T Consensus 284 ~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~ 316 (477)
T PF05935_consen 284 SIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWN 316 (477)
T ss_dssp EEEEEETTT-EEEEEE-TTS-EEEEES-STT--
T ss_pred eEEEEcCcceEEEEEECCCCcEEEEeCCCCCCC
Confidence 666666666689999999999887776655443
No 476
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.37 E-value=7.9 Score=43.13 Aligned_cols=113 Identities=9% Similarity=0.081 Sum_probs=72.5
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEEccC-------C----cc--------eeEEcccCCCeEEEEEe--eCCCEEEE
Q 038577 480 VHGLVFSP--TNATLASSSWDKTVRLWNVFE-------G----KG--------SVESFPHTHDVLTVVYR--PDGRQLAC 536 (860)
Q Consensus 480 v~~l~~s~--~~~~l~s~~~dg~i~iwd~~~-------~----~~--------~~~~~~~~~~v~~~~~s--~~~~~l~~ 536 (860)
|+.|.... +...|+.|.+||.|.+|.+++ . .. ..........+++++++ ...+++|+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 44444433 345788999999999997621 0 00 01112345678999998 88889999
Q ss_pred EeCCCeEEEEeCCCCc-eeEEEecccccCCCccccccccccccCCCCcEEEEEEecCC---C---EEEEecCCCeEEEEE
Q 038577 537 STLDGQIHFWDPLNGE-LMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADG---S---YILAGGSSKYICMYD 609 (860)
Q Consensus 537 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~---~l~~~~~dg~v~vwd 609 (860)
++....|.||-..... .....+.+ .+..-|.+++|-++. . +|++++-.|.+.+|+
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~------------------~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSH------------------QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ecCCceEEEEEEecccccccccccc------------------ccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 9988888888654321 10000000 122348888887654 2 788899999999988
Q ss_pred C
Q 038577 610 V 610 (860)
Q Consensus 610 ~ 610 (860)
+
T Consensus 245 I 245 (717)
T PF08728_consen 245 I 245 (717)
T ss_pred E
Confidence 7
No 477
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.29 E-value=1.8 Score=40.99 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=56.0
Q ss_pred EeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCCeEE
Q 038577 527 YRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSKYIC 606 (860)
Q Consensus 527 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~v~ 606 (860)
+..++++|++.+.+|.+++||+.+++.+..-..-.++... .. .........|..+.++.+|.-|++-+ +|..+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~-----~~-~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y 90 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNS-----SP-VSDKSSSPNITSCSLTSNGVPIVTLS-NGDSY 90 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcc-----cc-cccCCCCCcEEEEEEcCCCCEEEEEe-CCCEE
Confidence 5568889999999999999999998775543111111000 00 00003345689999999999887765 47789
Q ss_pred EEECCCceEEE
Q 038577 607 MYDVADQVLLR 617 (860)
Q Consensus 607 vwd~~~~~~~~ 617 (860)
.|+.+-+.-++
T Consensus 91 ~y~~~L~~W~~ 101 (219)
T PF07569_consen 91 SYSPDLGCWIR 101 (219)
T ss_pred EeccccceeEE
Confidence 99987765543
No 478
>PRK13613 lipoprotein LpqB; Provisional
Probab=91.23 E-value=28 Score=38.75 Aligned_cols=179 Identities=18% Similarity=0.179 Sum_probs=95.9
Q ss_pred CcEEEe-CCCEEEeeeC--CeEEEEECCCCcE-----EeeccCCccCeeEEEEcCCCCEEEEEcC--CCc--EEEEEccc
Q 038577 16 GNAVLS-QNTKLISPVG--NRVSVTDLIKSKT-----VTLPVESSSNICRIAVSPDGTFLLTVDE--NQR--CHFINLHC 83 (860)
Q Consensus 16 ~~~~~s-dg~~l~~~~~--~~i~v~d~~~~~~-----~~~~~~h~~~v~~va~spdg~~la~~~~--d~~--i~vwd~~~ 83 (860)
.+++.| |++.+|+..+ ..+++..+..+.. ...+ ....++.-.|.++|. +=+... ++. +++..- +
T Consensus 366 ~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~--~~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 366 RRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT--ADGRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred cceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee--ccCcccCCcCcCCCC-EEEecCCCCCceEEEEEcC-C
Confidence 368889 9988887654 3466665533332 1122 233477778888873 444422 222 445542 4
Q ss_pred CeEEE--EeecCC-ceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEEEEEeeccCCCeEEEEEcCCCCeE
Q 038577 84 HVVLH--RVRFKY-PVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFELIRTLADCNDKVTALNWSPDSNYL 156 (860)
Q Consensus 84 ~~~~~--~~~~~~-~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d~~~l 156 (860)
|+... .....+ .|..+..|+||..+|... .+.|+|=-+...........-...+..-...+..++|..++.++
T Consensus 442 G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~ 521 (599)
T PRK13613 442 GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLV 521 (599)
T ss_pred CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEE
Confidence 44432 112334 899999999999988873 36666554432211111111122222233458999999998877
Q ss_pred EEee-cCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCC
Q 038577 157 LVGS-KDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKK 202 (860)
Q Consensus 157 ~s~~-~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~ 202 (860)
+.+. .++...+|.+.-... .......+.-..+..++-..+..
T Consensus 522 Vlg~~~~~~~~v~~v~vdG~----~~~~~~~~~v~~~~~ia~~~~~~ 564 (599)
T PRK13613 522 VLGREEGGVQQARYVQVDGS----TPPASAPAAVTGVESITASEDER 564 (599)
T ss_pred EEeccCCCCcceEEEecCCc----CcccccccCCCCeeEEEecCCCC
Confidence 7553 333455555543311 12222233445566666665544
No 479
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=91.05 E-value=28 Score=38.39 Aligned_cols=231 Identities=12% Similarity=0.165 Sum_probs=113.3
Q ss_pred eCCCEEEEEEccCCcEEEEEccCceE--EEEecCc-ccCeEEEEEcCCC-CEEEEEeCCC--cEEEEECCCCeeEEEeec
Q 038577 316 ELGNWLVFGCAKLGQLLVWEWRSESY--ILKQQGH-YFDVNCLAYSPDS-QLLATGADDN--KVKVWTVSSGFCFVTFTE 389 (860)
Q Consensus 316 ~~~~~l~~~~~~~g~i~v~d~~~~~~--~~~~~~~-~~~v~~~~~s~~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~ 389 (860)
.++..++.+.. +|.+....+..... ....-+. .....++++..+| .+++.|+.-| .+..|....-+.+..+.
T Consensus 220 ~~~~~~lL~~e-~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 220 KDGDRILLQDE-DGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp TTSSEEEEEET-TSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred CCCCEEEEEeC-CCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 34555666654 49998887765442 2222222 4455677776665 4677777644 45555533344454553
Q ss_pred CCCceEEEEEeeC----CC------EEEEEe---CCCcEEEEEccccceee-----EeeCCCCCcEEEEEECC-CCCEEE
Q 038577 390 HTNAVTALHFMAN----NH------SLLSAS---LDGTVRAWDLFRYRNFR-----TFTTPSSRQFVSLASDQ-SGEVIC 450 (860)
Q Consensus 390 ~~~~v~~i~~~~~----~~------~l~s~~---~dg~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~l~ 450 (860)
.-++|.++++.+. .. .+++++ .+|.+++.. .+-... ....+....+..+.... +..+++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 5678999988532 12 555554 466777764 332222 22222222333333222 256777
Q ss_pred EEecCCCeEEEEECC---CCceEEEec--C---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEc-ccCCC
Q 038577 451 AGTLDSFEIFVWSMK---TGRLLDILS--G---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESF-PHTHD 521 (860)
Q Consensus 451 ~~~~~~~~i~v~d~~---~~~~~~~~~--~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~ 521 (860)
++..+ .-.++.+. ..+.+..+. + ....+.+-.+. +..++=.... .|++.+....+...... .....
T Consensus 376 ~S~~~--~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~ 450 (504)
T PF10433_consen 376 LSFPN--ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSI 450 (504)
T ss_dssp EEESS--EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS--
T ss_pred EEcCC--ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCe
Confidence 77665 45555553 333332221 1 11122222222 3444444433 48888877666444433 23444
Q ss_pred eEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 038577 522 VLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTI 557 (860)
Q Consensus 522 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 557 (860)
|.+.+. ++.+++.+..++.+.++.+.........
T Consensus 451 I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 484 (504)
T PF10433_consen 451 IVAASI--NDPQVLVALSGGELVYFELDDNKISVSD 484 (504)
T ss_dssp -SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeee
Confidence 444444 4467777777899999998877665433
No 480
>PRK13614 lipoprotein LpqB; Provisional
Probab=91.02 E-value=28 Score=38.35 Aligned_cols=162 Identities=13% Similarity=0.054 Sum_probs=90.2
Q ss_pred CeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeC-C--eEEEEeCCC-CCcccc
Q 038577 54 NICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTG-K--LVQIWRSPG-FKKEVF 129 (860)
Q Consensus 54 ~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~-~--~i~iwd~~~-~~~~~~ 129 (860)
.+.+++.|++|..+|....++. .+|-...+......-....++.-.|.++| .+-+..+ . .|..+...+ ++....
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccc
Confidence 6889999999999998877662 34432323333333335568888999988 5555533 2 444444321 111000
Q ss_pred eeEEEEEeeccCC-CeEEEEEcCCCCeEEEe-ecCCe--EEEEeecccccCc--ccccceEeecCCCcEEEEEEccCCCC
Q 038577 130 AFELIRTLADCND-KVTALNWSPDSNYLLVG-SKDLA--VRLFYVKEKLKGI--HTNKPFLLLGHRDSVVGCFFSVDKKT 203 (860)
Q Consensus 130 ~~~~~~~~~~h~~-~v~~l~~s~d~~~l~s~-~~dg~--v~vwd~~~~~~~~--~~~~~~~~~~h~~~i~~~~~~~~~~~ 203 (860)
.. .........+ .|+.+..|+||.+++.. ..+|. |.|=-+.....+. .......+ +....+.++.|..++.
T Consensus 422 ~~-~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~-~~~~~~~sl~W~~~~s- 498 (573)
T PRK13614 422 PT-VTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITL-AADSDADTGAWVGDST- 498 (573)
T ss_pred cc-eeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceec-ccCCCcceeEEcCCCE-
Confidence 00 0111223334 49999999999777663 34555 7665555432221 11112223 3356889999999886
Q ss_pred CccceEEEEcC---CccEEEeeec
Q 038577 204 DKVNRIYTIAR---DCYMFSWGFS 224 (860)
Q Consensus 204 ~~~~~l~s~~~---dg~i~~w~~~ 224 (860)
.++.... +..+++..+.
T Consensus 499 ----l~V~~~~~~~~~~~~~v~v~ 518 (573)
T PRK13614 499 ----VVVTKASATSNVVPELLSVD 518 (573)
T ss_pred ----EEEEeccCCCcceEEEEEeC
Confidence 5444432 2345555553
No 481
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.90 E-value=23 Score=37.14 Aligned_cols=267 Identities=11% Similarity=0.036 Sum_probs=0.0
Q ss_pred CCEEEEEEcCCeEEEEECCCceeEEEEeecC--ceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcc-cCe
Q 038577 276 LDMVVVGFSNGVFGLYQMPDFVCIHLLSISR--EKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHY-FDV 352 (860)
Q Consensus 276 ~~~l~~~~~~g~i~~~~~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~-~~v 352 (860)
...+.++..+|.+.-+|..++..+....... ..+..-.+..+|+ ++++..+ |.+..+|..+++.+....... ..+
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~-g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWD-GKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEeccc-ceEEEEECCCCcEEEEEecCCCeEE
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEeecCC--CceEEEEEeeCCCEEEEEeC--CCcEEEEEccccceeeE
Q 038577 353 NCLAYSPDSQLLATGADDNKVKVWTVSSGFCFVTFTEHT--NAVTALHFMANNHSLLSASL--DGTVRAWDLFRYRNFRT 428 (860)
Q Consensus 353 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~i~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~ 428 (860)
..-....++..++.. .+|.+...+..++.......... .....-........++.+.. ++.+.-.|..++.....
T Consensus 146 ~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeee
Q ss_pred ----eeCCCC----CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecC----cccCeEEEEEcC-CCCEEEEE
Q 038577 429 ----FTTPSS----RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSG----HEGPVHGLVFSP-TNATLASS 495 (860)
Q Consensus 429 ----~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~----h~~~v~~l~~s~-~~~~l~s~ 495 (860)
...... .+......--.+.-++.+..++ .+...|..+++.+..+.. ...++......- +|...+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g-~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~ 303 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGG-KLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGF 303 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCC-eEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEE
Q ss_pred e-----CCCcEEEEEccCCcce-eEEcccCCCeEEEEEeeCCCEEEEEeCCCe-EEEE
Q 038577 496 S-----WDKTVRLWNVFEGKGS-VESFPHTHDVLTVVYRPDGRQLACSTLDGQ-IHFW 546 (860)
Q Consensus 496 ~-----~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iw 546 (860)
. ..+.+..++...+... .-.....+..........+.++..+..++. ++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~~ly~~ 361 (370)
T COG1520 304 TDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGRGLYAF 361 (370)
T ss_pred eccccccccceEEEeccCCCeeEEEEEeCCCceecccceeccCeEEecccCCceEEEE
No 482
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=90.89 E-value=28 Score=40.37 Aligned_cols=193 Identities=13% Similarity=0.144 Sum_probs=97.2
Q ss_pred CEEEEEeCCeEEEEeCCCCCccccee-EEEEEeeccCCCeEEE--EEcCCCCeEEEeecC---CeEEEEeeccccc--C-
Q 038577 106 KYIAVGTGKLVQIWRSPGFKKEVFAF-ELIRTLADCNDKVTAL--NWSPDSNYLLVGSKD---LAVRLFYVKEKLK--G- 176 (860)
Q Consensus 106 ~~la~~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~h~~~v~~l--~~s~d~~~l~s~~~d---g~v~vwd~~~~~~--~- 176 (860)
-.|++...|.+.+|-.+...+..... .....+..-...|+.. +++.+|+.++.++.+ +.|++|.+.-.-. .
T Consensus 64 A~i~Vt~nG~l~l~yQ~~~~~~~~~s~~el~s~~~s~~~ithAsi~~~~~g~~ili~t~s~~s~~l~~yrv~I~W~~~~~ 143 (753)
T PF11635_consen 64 ACIAVTRNGLLKLWYQKPDGQWNESSTAELESLGSSDDLITHASIAPSDNGKSILIATYSSLSKQLRFYRVQIDWNAKPQ 143 (753)
T ss_pred EEEEEecCCeEEEEEEcCCCccceeehhhhccccccccceeeceeeecCCCCEEEEEEccccCCceEEEEEEEeccCcCc
Confidence 45666689999999873322110000 0011122234445554 445667666555544 7788876543210 0
Q ss_pred -ccc-ccceEeec----------------------CCCcEEEEEEcc---CCCCCccceEEEEcC----CccEEEeeecC
Q 038577 177 -IHT-NKPFLLLG----------------------HRDSVVGCFFSV---DKKTDKVNRIYTIAR----DCYMFSWGFSG 225 (860)
Q Consensus 177 -~~~-~~~~~~~~----------------------h~~~i~~~~~~~---~~~~~~~~~l~s~~~----dg~i~~w~~~~ 225 (860)
... ..+..... .-..++.+.|.+ +.. .....+++.+. ...|.-|.+..
T Consensus 144 ~~d~q~~PSl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LthL~ils~~~~~~-~~p~Ili~~~~~~~~~SiI~RweL~~ 222 (753)
T PF11635_consen 144 QIDPQKLPSLFLSHIADETPKDVDPTGWGDPSPDNSMYQLTHLEILSPTPDKD-SAPEILIVYSSPNTPSSIIERWELRE 222 (753)
T ss_pred cCCCCcCCeEEEEeccccccccccCccccccCcccccccceeEEEeccCCCCC-CCCeEEEEEEcCCCCCcEEEEEEEEc
Confidence 000 00100000 112455666654 211 11113433332 34799999987
Q ss_pred CCCCCccccCCCCCC-CCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCCceeEEEE
Q 038577 226 NDGKIDETMEDSEPP-SPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPDFVCIHLL 302 (860)
Q Consensus 226 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~~~~~~~~ 302 (860)
.........++.... ...........|....... ..+.|.++....-+..++....||+|.++|..+.+.+...
T Consensus 223 ~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~---~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~ 297 (753)
T PF11635_consen 223 EQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDIT---LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNET 297 (753)
T ss_pred cCcccchhhhhcCCCCcCCCCCCCceeEEEecccc---cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhccc
Confidence 654332222221111 1111222233444433332 3356889998888899999999999999998877555433
No 483
>PRK13615 lipoprotein LpqB; Provisional
Probab=90.86 E-value=29 Score=38.14 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=87.6
Q ss_pred CcEEEe-CCCEEEeeeC-CeEEEEECCCCcEEeeccCCccCeeEEEEcCCCCEEEEEcCCCcEEEEEcc-cCeEEEEee-
Q 038577 16 GNAVLS-QNTKLISPVG-NRVSVTDLIKSKTVTLPVESSSNICRIAVSPDGTFLLTVDENQRCHFINLH-CHVVLHRVR- 91 (860)
Q Consensus 16 ~~~~~s-dg~~l~~~~~-~~i~v~d~~~~~~~~~~~~h~~~v~~va~spdg~~la~~~~d~~i~vwd~~-~~~~~~~~~- 91 (860)
.+++.| ||+.+|+..+ ..+.++.... ...... ....++.-.|.++| .+=++.......+.... +|... ...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~~~~~--~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~-~v~v 411 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDR-DAVLLD--TRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGH-PVAV 411 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCC-cceeec--cCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceE-Eeec
Confidence 356888 9998887653 4577775552 222232 23457788888888 44444333334444433 23332 222
Q ss_pred ---cCCceeEEEECCCCCEEEEEe----CCeEEEEeCCCCCcccceeEE---EEEeeccCCCeEEEEEcCCCCeEEEe--
Q 038577 92 ---FKYPVNAILFSPNGKYIAVGT----GKLVQIWRSPGFKKEVFAFEL---IRTLADCNDKVTALNWSPDSNYLLVG-- 159 (860)
Q Consensus 92 ---~~~~v~~~~fspdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~s~d~~~l~s~-- 159 (860)
....|+.+..|+||..+|... .+.|.|--+..... .+..+ ...+..-...+.++.|..++...+.+
T Consensus 412 ~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~--~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~ 489 (557)
T PRK13615 412 SWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGG--VPTSLTTTPLELLASPGTPLDATWVDELDVATLTLA 489 (557)
T ss_pred cccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCC--cceEeeeccEEcccCcCcceeeEEcCCCEEEEEecc
Confidence 356899999999999988873 36777644433111 11112 12222223488999999998875655
Q ss_pred -ecCCeEEEEeeccc
Q 038577 160 -SKDLAVRLFYVKEK 173 (860)
Q Consensus 160 -~~dg~v~vwd~~~~ 173 (860)
+.+..+++..+...
T Consensus 490 ~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 490 PDGERQVELHQVGGP 504 (557)
T ss_pred CCCCceEEEEECCCc
Confidence 23345666666543
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.82 E-value=7 Score=39.88 Aligned_cols=162 Identities=14% Similarity=0.096 Sum_probs=94.6
Q ss_pred EeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEe--cCccc----CeE-EEEEcCCCCEEEEEeCCCcEE
Q 038577 302 LSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQ--QGHYF----DVN-CLAYSPDSQLLATGADDNKVK 374 (860)
Q Consensus 302 ~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~--~~~~~----~v~-~~~~s~~~~~l~~~~~dg~i~ 374 (860)
+......+..+-..|||+++.+-+. .++.++++.+.....+. ....+ .|+ .+..-..|..+.+++.||.|.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g--~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG--SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC--CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 3444456777888999999988776 67888887765433221 11111 122 122234566788899999998
Q ss_pred EE-ECCCC-----eeEEEeecCCCceEEEEEeeCCCEEEEEeCCCcEEEEEccccceeeEeeCCCCCcEEEEEECCCCCE
Q 038577 375 VW-TVSSG-----FCFVTFTEHTNAVTALHFMANNHSLLSASLDGTVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEV 448 (860)
Q Consensus 375 iw-d~~~~-----~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (860)
-| |...+ ..++.++-...++..+.-..+.+-+++-+..|++..+.-...+..-. .........+++||.+.+
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~--~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF--ERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh--hhhhcCcceeeeCcccch
Confidence 87 43322 12222222223444443333445677888888888776543332221 111224567889999999
Q ss_pred EEEEecCCCeEEEEECCCCce
Q 038577 449 ICAGTLDSFEIFVWSMKTGRL 469 (860)
Q Consensus 449 l~~~~~~~~~i~v~d~~~~~~ 469 (860)
+++-... .++++.+++..+
T Consensus 372 Ll~e~~g--ki~~~~l~Nr~P 390 (733)
T COG4590 372 LLSEDQG--KIRLAQLENRNP 390 (733)
T ss_pred heeecCC--ceEEEEecCCCC
Confidence 8876544 688888776543
No 485
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.80 E-value=21 Score=36.52 Aligned_cols=157 Identities=18% Similarity=0.263 Sum_probs=93.1
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCc------EEEEECCC--C--eeEE-----EeecCCC--------ceEEEEEeeCCCE
Q 038577 349 YFDVNCLAYSPDSQLLATGADDNK------VKVWTVSS--G--FCFV-----TFTEHTN--------AVTALHFMANNHS 405 (860)
Q Consensus 349 ~~~v~~~~~s~~~~~l~~~~~dg~------i~iwd~~~--~--~~~~-----~~~~~~~--------~v~~i~~~~~~~~ 405 (860)
-+.+..+.+.+++..+++.+.+|. +..+++.. + ..+. .+....+ ..-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 345778888866666666777777 55555443 1 1111 1111111 3447888778888
Q ss_pred EEEEeCC------CcEEEEEccccceeeEeeCC--------------CCCcEEEEEECCCCCEEEEEecCC---------
Q 038577 406 LLSASLD------GTVRAWDLFRYRNFRTFTTP--------------SSRQFVSLASDQSGEVICAGTLDS--------- 456 (860)
Q Consensus 406 l~s~~~d------g~i~~wd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~~--------- 456 (860)
+++.-.+ ..|..++.. ++....+..+ ....+-+++++|+|+.|+++....
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8877777 778888865 5555544322 234578899999999666654322
Q ss_pred ------CeEEEEECCC-Cce----EEEecC-----cccCeEEEEEcCCCCEEEEEe-----CCCcEEEEEc
Q 038577 457 ------FEIFVWSMKT-GRL----LDILSG-----HEGPVHGLVFSPTNATLASSS-----WDKTVRLWNV 506 (860)
Q Consensus 457 ------~~i~v~d~~~-~~~----~~~~~~-----h~~~v~~l~~s~~~~~l~s~~-----~dg~i~iwd~ 506 (860)
..|..||..+ ++. ...+.. ....|+.+.+-+++++|+.=- ....++|+-+
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 1355566655 322 222222 356789999999998776422 2344555544
No 486
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=90.76 E-value=20 Score=36.17 Aligned_cols=229 Identities=15% Similarity=0.055 Sum_probs=112.1
Q ss_pred CEEEEEEcCCeEEEEECCC--ceeEEEEeecCceeEEEEEeeCCCEEEEEEccCCcEEEEEccCceE-------------
Q 038577 277 DMVVVGFSNGVFGLYQMPD--FVCIHLLSISREKITTAVFNELGNWLVFGCAKLGQLLVWEWRSESY------------- 341 (860)
Q Consensus 277 ~~l~~~~~~g~i~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~------------- 341 (860)
++++.|+.+|...+. +.. .+..+. .+...|+.+...+.-+.+++-++....++.+++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 689999999976655 543 223332 23458999999999999888887666799999843221
Q ss_pred --EEEecCcccCeEEEEEcCCC-CEEEEEeCCCcEEEEECCCC----eeEEEe---e-cCCCceEEEEEeeC--CCEEEE
Q 038577 342 --ILKQQGHYFDVNCLAYSPDS-QLLATGADDNKVKVWTVSSG----FCFVTF---T-EHTNAVTALHFMAN--NHSLLS 408 (860)
Q Consensus 342 --~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~----~~~~~~---~-~~~~~v~~i~~~~~--~~~l~s 408 (860)
....-++.......+..... ..++++....+|.++..... .....+ . .-..++..+..+++ ...+..
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 01112333323333333221 23334444567777644322 111110 0 11223333333333 345666
Q ss_pred EeCCCcEEEEEccc--cceee----EeeCCCCCcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceE--EEecCcccCe
Q 038577 409 ASLDGTVRAWDLFR--YRNFR----TFTTPSSRQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLL--DILSGHEGPV 480 (860)
Q Consensus 409 ~~~dg~i~~wd~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~--~~~~~h~~~v 480 (860)
|+..+...++++.. ..... ...........++..-+++.++++-.. .....|....+.. ..+. -....
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~---~~v~Vn~~G~~~~r~~~l~-w~~~p 246 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDE---FGVFVNLYGKRRSRNPILH-WEFMP 246 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECc---EEEEEeCCCCccccceEEE-cCCcc
Confidence 66543344455432 11000 000011102233333344555544332 3445554421211 1122 23445
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEE
Q 038577 481 HGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVES 515 (860)
Q Consensus 481 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 515 (860)
.++++. ..+++.-+ +..|.++++.+++....+
T Consensus 247 ~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 247 ESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred cEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence 667775 46666665 455999999998744433
No 487
>PRK13613 lipoprotein LpqB; Provisional
Probab=90.47 E-value=33 Score=38.23 Aligned_cols=162 Identities=12% Similarity=0.046 Sum_probs=91.9
Q ss_pred CCcc-CeeEEEEcCCCCEEEEEcCCC-cEEEEEcccCeE----EEEeecCCceeEEEECCCCCEEEEE-e--CC--eEEE
Q 038577 50 ESSS-NICRIAVSPDGTFLLTVDENQ-RCHFINLHCHVV----LHRVRFKYPVNAILFSPNGKYIAVG-T--GK--LVQI 118 (860)
Q Consensus 50 ~h~~-~v~~va~spdg~~la~~~~d~-~i~vwd~~~~~~----~~~~~~~~~v~~~~fspdg~~la~~-~--~~--~i~i 118 (860)
++.. .+.+++.|+++..+|..+.++ .+.+..+..+.. ....-.....+.-.|.++| .+-+. . ++ .+++
T Consensus 359 g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v 437 (599)
T PRK13613 359 GSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWL 437 (599)
T ss_pred CCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEE
Confidence 4434 688999999999999887655 455555433333 1122234557888898888 44444 1 22 3555
Q ss_pred EeCCCCCcccceeEEEEEeeccCC-CeEEEEEcCCCCeEEEeec---CCeEEEEeecccccCc-ccccceEeecCCCcEE
Q 038577 119 WRSPGFKKEVFAFELIRTLADCND-KVTALNWSPDSNYLLVGSK---DLAVRLFYVKEKLKGI-HTNKPFLLLGHRDSVV 193 (860)
Q Consensus 119 wd~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~d~~~l~s~~~---dg~v~vwd~~~~~~~~-~~~~~~~~~~h~~~i~ 193 (860)
..- +++.. .+.. ....+ .|..+..|+||.++|.... .+.|.|=-+.....+. .......+......+.
T Consensus 438 ~~~-~G~~~-----~V~~-~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~ 510 (599)
T PRK13613 438 LQG-DGEPV-----EVRT-PELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVT 510 (599)
T ss_pred EcC-CCcEE-----Eeec-cccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccc
Confidence 553 33321 1111 12233 7999999999988776543 3566665555432221 1122233333344589
Q ss_pred EEEEccCCCCCccceEEEEc-CCccEEEeeec
Q 038577 194 GCFFSVDKKTDKVNRIYTIA-RDCYMFSWGFS 224 (860)
Q Consensus 194 ~~~~~~~~~~~~~~~l~s~~-~dg~i~~w~~~ 224 (860)
++.|..++. .++.+. .++...+|.+.
T Consensus 511 ~~~W~~~~s-----L~Vlg~~~~~~~~v~~v~ 537 (599)
T PRK13613 511 DMSWAGDSQ-----LVVLGREEGGVQQARYVQ 537 (599)
T ss_pred eeEEcCCCE-----EEEEeccCCCCcceEEEe
Confidence 999999986 555443 33344445443
No 488
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.30 E-value=42 Score=39.17 Aligned_cols=172 Identities=11% Similarity=0.056 Sum_probs=96.5
Q ss_pred ecCCceeEEEEC---C----CCCEEEEEeCCeEEEEeCCCC------Cc--ccceeEEEEEeecc---CCCeEEEEEcCC
Q 038577 91 RFKYPVNAILFS---P----NGKYIAVGTGKLVQIWRSPGF------KK--EVFAFELIRTLADC---NDKVTALNWSPD 152 (860)
Q Consensus 91 ~~~~~v~~~~fs---p----dg~~la~~~~~~i~iwd~~~~------~~--~~~~~~~~~~~~~h---~~~v~~l~~s~d 152 (860)
....+|..|+|+ . ..++|++-....+.|+...-. .. ......++..+..+ ..+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 356778888887 2 336888888888888882211 10 11111233444422 235778999984
Q ss_pred -CCeEEEeecCCeEEEEeecccccCcccccceEeecCCC----------cEEEEEEccCCCCCccceEEEEcCCccEEEe
Q 038577 153 -SNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRD----------SVVGCFFSVDKKTDKVNRIYTIARDCYMFSW 221 (860)
Q Consensus 153 -~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~----------~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w 221 (860)
.+.||+....|...||++... .............+.+ .-..+.|.++.. .|+.++. ..+.++
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~-~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-----~lLv~~r-~~l~~~ 229 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGR-PKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-----RLLVCNR-SKLMLI 229 (765)
T ss_pred ccceEEEEeccCcEEEEEeccc-cccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-----EEEEEcC-CceEEE
Confidence 468999999999999999322 1110011111112222 233677877766 6776664 466778
Q ss_pred eecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECCC
Q 038577 222 GFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMPD 295 (860)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~~ 295 (860)
|+++..... . .........|..+.-+|...-.+.-.....|...++..
T Consensus 230 d~~~~~~~~-------------------------~-l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 230 DFESNWQTE-------------------------Y-LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ECCCCCccc-------------------------h-hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 877643200 0 11122334677777777633222223446677777654
No 489
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.14 E-value=1.7 Score=28.01 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=30.8
Q ss_pred CCCCEEEEEc-CCCcEEEEEcccCeEEEEeecCCceeEEEEC
Q 038577 62 PDGTFLLTVD-ENQRCHFINLHCHVVLHRVRFKYPVNAILFS 102 (860)
Q Consensus 62 pdg~~la~~~-~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fs 102 (860)
|++++|.++. .+++|.++|..+++.+..+.....-..++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 6788777654 4789999999999999888855555566553
No 490
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.74 E-value=27 Score=36.18 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=28.6
Q ss_pred EeeCCCEEEEEEccC----------CcEEEEEccCceEEEEecCcccCeEEE-EE-cCCCCEEEEEeCC
Q 038577 314 FNELGNWLVFGCAKL----------GQLLVWEWRSESYILKQQGHYFDVNCL-AY-SPDSQLLATGADD 370 (860)
Q Consensus 314 ~s~~~~~l~~~~~~~----------g~i~v~d~~~~~~~~~~~~~~~~v~~~-~~-s~~~~~l~~~~~d 370 (860)
..-+++..++++... ..+..||..+.+............... +. .-+++..+.|+.+
T Consensus 60 ~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 344566666665421 347778887766544321111111111 12 3467777887754
No 491
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=89.73 E-value=30 Score=42.28 Aligned_cols=366 Identities=13% Similarity=0.111 Sum_probs=170.8
Q ss_pred CccCeeEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEe---ecCCceeEEEECCCCCEEEEEeCCeEEEEeCCCCCcc
Q 038577 51 SSSNICRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRV---RFKYPVNAILFSPNGKYIAVGTGKLVQIWRSPGFKKE 127 (860)
Q Consensus 51 h~~~v~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~---~~~~~v~~~~fspdg~~la~~~~~~i~iwd~~~~~~~ 127 (860)
|-..++.|.-+|+|+.+=. .++.++.||.... .+.. ....+++.+.-.-||++.| - ++.. +-|+..+...
T Consensus 361 H~A~LTgv~~~~~ge~lRl--Hd~~LY~~d~~~~--~Wk~~~~~~d~~~S~Ls~qgdG~lYA-k-~~~~-l~nLSs~~~~ 433 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL--HDDRLYQFDPNTA--RWKPPPDKSDTPFSSLSRQGDGKLYA-K-DDDT-LVNLSSGQMS 433 (1774)
T ss_pred HHHHhhccccCCCCCeEEe--ecCceeeeccccc--eecCCCCcccchhhhhcccCCCceEe-c-CCCc-eeecCCCCcc
Confidence 5555677777777776543 3567777776654 2221 1234455555555666655 2 2211 3344443310
Q ss_pred cceeEEEEEeeccCCCeEEEEEcCCCCe-EEEeecCCeEEEEeecccccCccccc--ceEeecCCCcEEEEEEccCCCCC
Q 038577 128 VFAFELIRTLADCNDKVTALNWSPDSNY-LLVGSKDLAVRLFYVKEKLKGIHTNK--PFLLLGHRDSVVGCFFSVDKKTD 204 (860)
Q Consensus 128 ~~~~~~~~~~~~h~~~v~~l~~s~d~~~-l~s~~~dg~v~vwd~~~~~~~~~~~~--~~~~~~h~~~i~~~~~~~~~~~~ 204 (860)
...-..+.+...+++|.. +.++.....+.+|++....-...... ...+.+-.....++.++++
T Consensus 434 ----------~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~d---- 499 (1774)
T PF11725_consen 434 ----------EAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSND---- 499 (1774)
T ss_pred ----------hhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecCC----
Confidence 111234677778899987 45555555679999886621111111 2233333445667777766
Q ss_pred ccceEEEEcCCccEEEeeecCCCCCC---ccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEE
Q 038577 205 KVNRIYTIARDCYMFSWGFSGNDGKI---DETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVV 281 (860)
Q Consensus 205 ~~~~l~s~~~dg~i~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 281 (860)
+|+++..+|.++.-++......- ................... .....+.+..+.+..+.=+..|..-.+
T Consensus 500 ---rLFvADseGkLYsa~l~~~~~~~~~l~~~p~~~~~~~~~~~G~~~-----~VtGF~~gd~G~lhAlikd~~GQ~Hs~ 571 (1774)
T PF11725_consen 500 ---RLFVADSEGKLYSADLPAAQDNEPKLKLMPEPAYQLLGSALGGDH-----KVTGFISGDDGQLHALIKDRQGQRHSH 571 (1774)
T ss_pred ---eEEEEeCCCCEEecccccccCCCcceEeccccccccccccccccc-----eeeccccCCCCeeeEEEeccCCceeec
Confidence 79999999999888776533210 0000000000000000000 001112222223333332222322222
Q ss_pred EEc-CC-eEE-EEECCCceeEEEEeecCc-----eeEEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEE---------
Q 038577 282 GFS-NG-VFG-LYQMPDFVCIHLLSISRE-----KITTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILK--------- 344 (860)
Q Consensus 282 ~~~-~g-~i~-~~~~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~--------- 344 (860)
.-. ++ .+. =|++.+.-.+..-.+-.. .-..+.+...|. ++-. +|.|..||-.+......
T Consensus 572 aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~---v~L~-~G~i~~wD~ttq~W~~~~~kd~~~L~ 647 (1774)
T PF11725_consen 572 ALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGL---VGLQ-DGKIQYWDSTTQCWKDAGVKDIDQLK 647 (1774)
T ss_pred cccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccc---eeec-cceEeeecCcchhhhhccCcCHHHHh
Confidence 111 00 000 133322111111111000 001111112222 2222 39999998655432111
Q ss_pred -------ecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEE----CCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC
Q 038577 345 -------QQGHYFDVNCLAYSPDSQLLATGADDNKVKVWT----VSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG 413 (860)
Q Consensus 345 -------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd----~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg 413 (860)
+.-..+.|..+.+++....++-+.. ..+.+=- ++-|..+.-+. ...|+++++-.+ +.+++....|
T Consensus 648 RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~~-~~~a~~~~r~~~e~G~~l~Gl~--~~~i~a~Avv~~-~~fvald~qg 723 (1774)
T PF11725_consen 648 RGLDGNAYVLKDGKVKRLSINQEHPSIAHGDN-NVFALPQRRNKVELGDALEGLE--DRVITAFAVVND-NKFVALDDQG 723 (1774)
T ss_pred ccccCCceEecCCceeeeecccCCCccccCCC-cccccccccCCCCCCccccCCC--cCcceeEEEEcC-CceEEeccCC
Confidence 0112345666777766555544332 1111100 01122222222 456788887654 5778888899
Q ss_pred cEEEEEccccceeeEeeCCCCCcEEEEEECCCCCEEEEEec
Q 038577 414 TVRAWDLFRYRNFRTFTTPSSRQFVSLASDQSGEVICAGTL 454 (860)
Q Consensus 414 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (860)
.+.... ..+.....-...-...|..++++...++.|....
T Consensus 724 ~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~ 763 (1774)
T PF11725_consen 724 DLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYALTST 763 (1774)
T ss_pred cccccc-CCCCCccCCCCCCCcchhheeeccccceeEecCC
Confidence 999887 5555333333334467888888888776665543
No 492
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.50 E-value=33 Score=36.72 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=89.4
Q ss_pred CcEEEEECCCCeeEEEeec-CCCceEEEEEeeCCCEEEEEeCCCcEEEEEccc-cceeeEeeCCCCCcEEEEEECCCCCE
Q 038577 371 NKVKVWTVSSGFCFVTFTE-HTNAVTALHFMANNHSLLSASLDGTVRAWDLFR-YRNFRTFTTPSSRQFVSLASDQSGEV 448 (860)
Q Consensus 371 g~i~iwd~~~~~~~~~~~~-~~~~v~~i~~~~~~~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (860)
|.+.+-+-.+|..+..... -...|+.+++..++ .+..++...-+..|+..+ +.............+..+.-.|+++
T Consensus 354 g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns- 431 (671)
T COG3292 354 GELMVANGSTGELVRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS- 431 (671)
T ss_pred ceEEEecCCCCcEEEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-
Confidence 3344444455555544322 23456666666644 566666665566666665 3344444455566788888899999
Q ss_pred EEEEecCCCeEEEEECCCCceEEEec--C---cccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeEEcccCCCeE
Q 038577 449 ICAGTLDSFEIFVWSMKTGRLLDILS--G---HEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVESFPHTHDVL 523 (860)
Q Consensus 449 l~~~~~~~~~i~v~d~~~~~~~~~~~--~---h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 523 (860)
+.+|+.++ +.--+.+.++....+. . ..+.|..+.+.|+|++-+..+ +| |..|+-+..............-.
T Consensus 432 LWIGTs~G--lvk~~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g-~g-va~~~sq~~~~~~~l~~~~q~qy 507 (671)
T COG3292 432 LWIGTSGG--LVKRDPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAAG-SG-VAAWESQRRMFVPILDLTGQRQY 507 (671)
T ss_pred EEEeccCC--eEecCccccchhcccccccCcCCcchhhhhccCCCCceEEEec-ce-eeeeccccceecccccccceeeE
Confidence 77788776 4444555544443332 1 234467788899998644332 34 67777654432222211111112
Q ss_pred EEEEeeCCCEEEEEeCCCeE
Q 038577 524 TVVYRPDGRQLACSTLDGQI 543 (860)
Q Consensus 524 ~~~~s~~~~~l~~~~~dg~i 543 (860)
.. +--.+.++..+...|.+
T Consensus 508 ~f-~~~~~d~vw~~~~Rg~v 526 (671)
T COG3292 508 SF-VPVGGDEVWVHRLRGLV 526 (671)
T ss_pred EE-EEccCceEeeeeeceee
Confidence 22 22255566666554433
No 493
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.38 E-value=2.1 Score=27.60 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=30.0
Q ss_pred CCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEE
Q 038577 444 QSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVF 485 (860)
Q Consensus 444 ~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~ 485 (860)
|+++.++++....+.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 578888888876669999999998888777642 33334444
No 494
>PLN02193 nitrile-specifier protein
Probab=89.26 E-value=37 Score=36.99 Aligned_cols=197 Identities=9% Similarity=-0.005 Sum_probs=0.0
Q ss_pred EEeeCCCEEEEEeCC-------CcEEEEEccccceeeEe---eCCCCCcEEEEEECCCCCEEEEEecCC----CeEEEEE
Q 038577 398 HFMANNHSLLSASLD-------GTVRAWDLFRYRNFRTF---TTPSSRQFVSLASDQSGEVICAGTLDS----FEIFVWS 463 (860)
Q Consensus 398 ~~~~~~~~l~s~~~d-------g~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~i~v~d 463 (860)
+..-++..++.|+.+ ..+.+||+.+.+=...- ..+........+..-++.+.+.|+.++ ..++.||
T Consensus 171 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD 250 (470)
T PLN02193 171 IAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFD 250 (470)
T ss_pred EEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEE
Q ss_pred CCCCceEEEecC---cccCeEEEEEcCCCCEEEEEeCCCc-----EEEEEccCCcceeEEc---ccCCCeEEEEEeeCCC
Q 038577 464 MKTGRLLDILSG---HEGPVHGLVFSPTNATLASSSWDKT-----VRLWNVFEGKGSVESF---PHTHDVLTVVYRPDGR 532 (860)
Q Consensus 464 ~~~~~~~~~~~~---h~~~v~~l~~s~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~ 532 (860)
+.+.+....-.. ....-...+..-++++.+.|+.++. +..||+.+.+-..... .........+..-+++
T Consensus 251 ~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gk 330 (470)
T PLN02193 251 TTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGK 330 (470)
T ss_pred CCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCc
Q ss_pred EEEEEeCC----CeEEEEeCCCCceeEEEec---ccccCCCccccccccccccCCCCcEEEEEEecCCCEEEEecCCC--
Q 038577 533 QLACSTLD----GQIHFWDPLNGELMYTIEG---RRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGSYILAGGSSK-- 603 (860)
Q Consensus 533 ~l~~~~~d----g~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg-- 603 (860)
+++.++.+ ..+.+||+.+.+-...-.. ... .....+..-++++++.|+...
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~--------------------R~~~~~~~~~~~iyv~GG~~~~~ 390 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSE--------------------RSVFASAAVGKHIVIFGGEIAMD 390 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCC--------------------cceeEEEEECCEEEEECCccCCc
Q ss_pred ------------eEEEEECCCce
Q 038577 604 ------------YICMYDVADQV 614 (860)
Q Consensus 604 ------------~v~vwd~~~~~ 614 (860)
.+.+||+.+.+
T Consensus 391 ~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 391 PLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred cccccCccceeccEEEEEcCcCE
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.16 E-value=32 Score=36.16 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=19.5
Q ss_pred eEEEEECCCCceEEEecCcc--cCeEEEEEcCCCCEEEEEeC
Q 038577 458 EIFVWSMKTGRLLDILSGHE--GPVHGLVFSPTNATLASSSW 497 (860)
Q Consensus 458 ~i~v~d~~~~~~~~~~~~h~--~~v~~l~~s~~~~~l~s~~~ 497 (860)
.+.+||..+.+-...-.... ..-.+++.. ++++.+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 68899988765443211111 111223222 5666666664
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.95 E-value=34 Score=38.02 Aligned_cols=410 Identities=10% Similarity=0.004 Sum_probs=0.0
Q ss_pred EEeeccCCCeEEEEEcCCCCeEEE----eecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEE
Q 038577 135 RTLADCNDKVTALNWSPDSNYLLV----GSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIY 210 (860)
Q Consensus 135 ~~~~~h~~~v~~l~~s~d~~~l~s----~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~ 210 (860)
.++..-.+.+..++|..-+..+.. ++.|.-|.|...... ...........+...+.+.++.+-.+-. .++
T Consensus 10 ~~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~-~d~s~l~~F~ip~f~dkl~s~~hf~~~~-----~~~ 83 (1243)
T COG5290 10 STFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSI-YDESGLKRFEIPFFPDKLLSFKHFHVLT-----FEY 83 (1243)
T ss_pred ccCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccc-cchhheeEeccCCcchHhhhhhhhhhhh-----eee
Q ss_pred EEcCCccEEEeeecCCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEE
Q 038577 211 TIARDCYMFSWGFSGNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGL 290 (860)
Q Consensus 211 s~~~dg~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~ 290 (860)
..-..|.+..--.+. ...-........-...|...+|+.|.+.+++...+..|.+
T Consensus 84 f~~~~gDii~~~~dp-------------------------~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~ 138 (1243)
T COG5290 84 FLIDEGDIIHLVNDP-------------------------TPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILL 138 (1243)
T ss_pred EEecCCcEEEEEcCC-------------------------CcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEE
Q ss_pred EECCCceeEEEEeecCcee------EEEEEeeCCCEEEEEEccCCcEEEEEccCceEEEEecCcccCeEEEEEcCCCCEE
Q 038577 291 YQMPDFVCIHLLSISREKI------TTAVFNELGNWLVFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCLAYSPDSQLL 364 (860)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~i------~~~~~s~~~~~l~~~~~~~g~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 364 (860)
++- ...++.......... ..+.|-.....+---+.. .+++==-+.-.--...+..-...-.-+.|-.|..+.
T Consensus 139 ~~k-~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~r-aqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~ 216 (1243)
T COG5290 139 FDK-YFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGAR-AQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYN 216 (1243)
T ss_pred Eec-cccccchhhcchhHHHHhccceEeeecccchhccccchh-hhccCCCCcccccccceeEeeCCceEEEEccCccee
Q ss_pred EEEeC----CCcEEEEECCCCeeEEEeecCCCceEEEEEeeCCCEEEEEeCCC-----cEEEEEccccceeeE-eeCCCC
Q 038577 365 ATGAD----DNKVKVWTVSSGFCFVTFTEHTNAVTALHFMANNHSLLSASLDG-----TVRAWDLFRYRNFRT-FTTPSS 434 (860)
Q Consensus 365 ~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~-~~~~~~ 434 (860)
+++.. ...+++|. +.|..-..-....+.-..+.|-|+|..+++-+.|| .|.++.-+..+.-.. +..+..
T Consensus 217 ~v~r~Ee~prra~rvys-reg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~d 295 (1243)
T COG5290 217 LVGRSEERPRRAFRVYS-REGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCD 295 (1243)
T ss_pred eecchhcccccceeeec-cccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCch
Q ss_pred CcEEEEEECCCCCEEEEEecCCCeEEEEECCCCceEEEecCcccCeEEEEEcCCCCEEEEEeCCCcEEEEEccCCcceeE
Q 038577 435 RQFVSLASDQSGEVICAGTLDSFEIFVWSMKTGRLLDILSGHEGPVHGLVFSPTNATLASSSWDKTVRLWNVFEGKGSVE 514 (860)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 514 (860)
......+|+-....++++..+ .+++|-..+-.......-.-..+.-+.|+|....-+.-+..+.|..-++........
T Consensus 296 Ek~~~~~wn~~s~vlav~~~n--~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~~~~~ 373 (1243)
T COG5290 296 EKAFLENWNLLSTVLAVAEGN--LLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSEKKTHHG 373 (1243)
T ss_pred hhhhhhhhhHHHHHHHHhhcc--eEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEeehhhhcCC
Q ss_pred EcccCCCeEEEEEeeCCCEEEEEeCCCeEEEEeCCCCceeEEEecccccCCCccccccccccccCCCCcEEEEEEecCCC
Q 038577 515 SFPHTHDVLTVVYRPDGRQLACSTLDGQIHFWDPLNGELMYTIEGRRDISGGRLMTDRRSAANSSSGKCFTTLCYSADGS 594 (860)
Q Consensus 515 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~ 594 (860)
.......-++... ||+++...- +.+-++.-.-.-..+..... |..+..+...+
T Consensus 374 s~~p~d~g~~~Vi--DGs~~l~Tp----lsl~n~PPPm~~~~~~~d~N---------------------V~dv~~s~~~~ 426 (1243)
T COG5290 374 SEYPFDNGTSYVI--DGSYMLYTP----LSLKNLPPPMFSVRVGFDTN---------------------VVDVFPSFAEK 426 (1243)
T ss_pred cccCccCCceEEE--cCceEEecc----hhhhcCCCCeEEEEecCCCc---------------------eeeeccchhhh
Q ss_pred EEEEecCCCeEEE
Q 038577 595 YILAGGSSKYICM 607 (860)
Q Consensus 595 ~l~~~~~dg~v~v 607 (860)
..++...|..+..
T Consensus 427 ~~aa~~~drli~f 439 (1243)
T COG5290 427 KGAALLRDRLIMF 439 (1243)
T ss_pred hHhhhccceeEEE
No 497
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.86 E-value=15 Score=37.69 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=89.8
Q ss_pred EEEEEcCCCCeEEEeecCCeEEEEeecccccCcccccceEeecCCCcEEEEEEccCCCCCccceEEEEcCCccEEEeeec
Q 038577 145 TALNWSPDSNYLLVGSKDLAVRLFYVKEKLKGIHTNKPFLLLGHRDSVVGCFFSVDKKTDKVNRIYTIARDCYMFSWGFS 224 (860)
Q Consensus 145 ~~l~~s~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~h~~~i~~~~~~~~~~~~~~~~l~s~~~dg~i~~w~~~ 224 (860)
+.+-|. |.+.++.+...|.+.=|.+...... ..+..-....++|.++.|++|.+ .++.--.+++|.+++..
T Consensus 26 ngvFfD-DaNkqlfavrSggatgvvvkgpndD---VpiSfdm~d~G~I~SIkFSlDnk-----ilAVQR~~~~v~f~nf~ 96 (657)
T KOG2377|consen 26 NGVFFD-DANKQLFAVRSGGATGVVVKGPNDD---VPISFDMDDKGEIKSIKFSLDNK-----ILAVQRTSKTVDFCNFI 96 (657)
T ss_pred cceeec-cCcceEEEEecCCeeEEEEeCCCCC---CCceeeecCCCceeEEEeccCcc-----eEEEEecCceEEEEecC
Confidence 344444 4444555555667777877665222 23333345677999999999999 99999999999999885
Q ss_pred CCCCCCccccCCCCCCCCCCCcceeeeEEeeeeccccCCCCceEEEEecCCCCEEEEEEcCCeEEEEECC-CceeEEEEe
Q 038577 225 GNDGKIDETMEDSEPPSPGTPERRVKKWGLLRKDDFSQAPSKVTACDYHRGLDMVVVGFSNGVFGLYQMP-DFVCIHLLS 303 (860)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~g~i~~~~~~-~~~~~~~~~ 303 (860)
..+.... ...........|....|+.. .-+|.....| +.+|... ....++..+
T Consensus 97 ~d~~~l~------------------------~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVk 150 (657)
T KOG2377|consen 97 PDNSQLE------------------------YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVK 150 (657)
T ss_pred CCchhhH------------------------HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhh
Confidence 5432110 11112233445888888776 4455555555 4555543 233444555
Q ss_pred ecCceeEEEEEeeCCCEEEEEEc
Q 038577 304 ISREKITTAVFNELGNWLVFGCA 326 (860)
Q Consensus 304 ~~~~~i~~~~~s~~~~~l~~~~~ 326 (860)
.+.-.|.-..|.++.+.++.+++
T Consensus 151 s~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 151 SHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hcccCccEEEEccccceEeeecc
Confidence 56667777777777776665554
No 498
>PRK13615 lipoprotein LpqB; Provisional
Probab=88.65 E-value=42 Score=36.89 Aligned_cols=156 Identities=10% Similarity=0.022 Sum_probs=90.7
Q ss_pred eEEEEcCCCCEEEEEcCCCcEEEEEcccCeEEEEeecCCceeEEEECCCCCEEEEEeC-CeEEEEeCCC-CCcccceeEE
Q 038577 56 CRIAVSPDGTFLLTVDENQRCHFINLHCHVVLHRVRFKYPVNAILFSPNGKYIAVGTG-KLVQIWRSPG-FKKEVFAFEL 133 (860)
Q Consensus 56 ~~va~spdg~~la~~~~d~~i~vwd~~~~~~~~~~~~~~~v~~~~fspdg~~la~~~~-~~i~iwd~~~-~~~~~~~~~~ 133 (860)
.+++.|++|..+|....++.+.++.... .... +.....++.-.|.++| .+-+..+ ....+..... +.. . .
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~-~~~~-~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~----~-~ 408 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDR-DAVL-LDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVG----H-P 408 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCC-ccee-eccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCce----E-E
Confidence 7899999999999988788787776552 2222 2224457888899988 5555533 2344444332 221 0 1
Q ss_pred EEEeeccCCCeEEEEEcCCCCeEEEeec---CCeEEEEeecccccCc--cc-ccceEeecCCCcEEEEEEccCCCCCccc
Q 038577 134 IRTLADCNDKVTALNWSPDSNYLLVGSK---DLAVRLFYVKEKLKGI--HT-NKPFLLLGHRDSVVGCFFSVDKKTDKVN 207 (860)
Q Consensus 134 ~~~~~~h~~~v~~l~~s~d~~~l~s~~~---dg~v~vwd~~~~~~~~--~~-~~~~~~~~h~~~i~~~~~~~~~~~~~~~ 207 (860)
+..--.-.+.|..+..|+||.+++.... .++|.|=-+... ... .. .....+......+.++.|..++.
T Consensus 409 v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~-~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~----- 482 (557)
T PRK13615 409 VAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRD-GGVPTSLTTTPLELLASPGTPLDATWVDELD----- 482 (557)
T ss_pred eeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeC-CCcceEeeeccEEcccCcCcceeeEEcCCCE-----
Confidence 1111112357999999999988776532 356766555442 221 11 12233333344889999999886
Q ss_pred eEEEEc---CCccEEEeeecC
Q 038577 208 RIYTIA---RDCYMFSWGFSG 225 (860)
Q Consensus 208 ~l~s~~---~dg~i~~w~~~~ 225 (860)
..+.+. .+..+++..+..
T Consensus 483 laVl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 483 VATLTLAPDGERQVELHQVGG 503 (557)
T ss_pred EEEEeccCCCCceEEEEECCC
Confidence 544442 234555555553
No 499
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.49 E-value=32 Score=35.26 Aligned_cols=106 Identities=11% Similarity=0.092 Sum_probs=51.3
Q ss_pred CCCEEEEEEccC----CcEEEEEccCceEE---EEecCcccCe--EEEEEcCCCCEEEEEeC-----CCcEEEEECCCCe
Q 038577 317 LGNWLVFGCAKL----GQLLVWEWRSESYI---LKQQGHYFDV--NCLAYSPDSQLLATGAD-----DNKVKVWTVSSGF 382 (860)
Q Consensus 317 ~~~~l~~~~~~~----g~i~v~d~~~~~~~---~~~~~~~~~v--~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~ 382 (860)
++..+++++.+. ..+..+|+.+.... .....-..+. .+++. -++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 455555555331 35667777666531 1211111111 12222 25666677764 2357888877653
Q ss_pred eEE--EeecCCCceEEEEEeeCCCEEEEEeCCCc----EEEEEccccc
Q 038577 383 CFV--TFTEHTNAVTALHFMANNHSLLSASLDGT----VRAWDLFRYR 424 (860)
Q Consensus 383 ~~~--~~~~~~~~v~~i~~~~~~~~l~s~~~dg~----i~~wd~~~~~ 424 (860)
-.. .+.. .......+...+++..+.||.++. +.+||+.+.+
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 222 1211 111222223346677777876643 4578876643
No 500
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.96 E-value=27 Score=37.45 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=25.8
Q ss_pred cEEEEEEecCCCEEEEecCCCeEEEEECCC
Q 038577 583 CFTTLCYSADGSYILAGGSSKYICMYDVAD 612 (860)
Q Consensus 583 ~i~~l~~s~~g~~l~~~~~dg~v~vwd~~~ 612 (860)
.|.+++..+..+.|++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 499999999999999999999999999974
Done!