BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038581
(792 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 168/662 (25%), Positives = 284/662 (42%), Gaps = 124/662 (18%)
Query: 64 RVKDLVSRMTLDEKVQQL------GDFA-------------HGVPRLGLPQYEWWSEALH 104
+V +++S++TL+EKV+ + G F H VPR+GLP + ++
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGPA 61
Query: 105 GVSNVGPGTHFDDVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTY 164
G+ + P D+ T+FP I+ +++N L +++G+A+ E R Y +
Sbjct: 62 GL-RINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGVD----VL 115
Query: 165 WSPNINVARDPRWGRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSC 224
+P +N+ R+P GR E EDP + G A ++V+G+Q V +C
Sbjct: 116 LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQS--------------QGVGAC 161
Query: 225 CKHYAAYDVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNGIP 284
KH+ A N + +R D V+E+ + E +LR FE+ VK+ SVM +YN++NG
Sbjct: 162 IKHFVA----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKY 217
Query: 285 SCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDC- 343
+ LL + +R EW G++++D + D + LKAG DL
Sbjct: 218 CSQNEWLLKKVLREEWGFEGFVMSDWYA---------------GDNPVEQLKAGNDLIMP 262
Query: 344 GQYYTNFTG---------NAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSPQYVSLGKQ 394
G+ Y T A+++GK+ E +D+ ++ + VL+ F Y K
Sbjct: 263 GKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFK---NYRYSNKP 319
Query: 395 DICSDENIELAAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYAGIP 454
D+ +++ ++A EA EG+VLL +N L ++ +A+ G T+
Sbjct: 320 DL--EKHAKVAYEAGAEGVVLL---RNEEALPLSENSKIALFGTGQIETIKGGTGSGDTH 374
Query: 455 CRY-MSPIAGFSGYA--------------------NVTYKTGCDD----VACKSNNSIFX 489
RY +S + G YK D + K +
Sbjct: 375 PRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLS 434
Query: 490 XXXXXXXXXXTIILAGLDLSVEAESLDRE----DLWLPGYQTQLINQVAEV--AKGPVIL 543
+ + + E DR+ D +L +T LI V+ +G ++
Sbjct: 435 EKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 544 VIMSAGGVDIAFAETNTNIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITWYNGDYV 603
V+++ G + + IL G+E GR +ADV+ G+ NP G+LP T + DY
Sbjct: 495 VLLNIGS-PVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDYS 552
Query: 604 QMLPLTSMPLRPVDS-----------LGYPGRTYKFYNGPTLYPFGYGLSYTQFKYNLLS 652
+P + P P D+ +GY R Y + Y FGYGLSYT F+Y+ L+
Sbjct: 553 D-VPSWTFPGEPKDNPQKVVYEEDIYVGY--RYYDTFGVEPAYEFGYGLSYTTFEYSDLN 609
Query: 653 FT 654
+
Sbjct: 610 VS 611
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 168/662 (25%), Positives = 283/662 (42%), Gaps = 124/662 (18%)
Query: 64 RVKDLVSRMTLDEKVQQL------GDFA-------------HGVPRLGLPQYEWWSEALH 104
+V +++S++TL+EKV+ + G F H VPR+GLP + ++
Sbjct: 3 KVNEILSQLTLEEKVKLVVGVGLPGLFGNPHSRVAGAAGETHPVPRVGLPAF-VLADGPA 61
Query: 105 GVSNVGPGTHFDDVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTY 164
G+ + P D+ T+FP I+ +++N L +++G+A+ E R Y +
Sbjct: 62 GL-RINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEVRE-YGVD----VL 115
Query: 165 WSPNINVARDPRWGRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSC 224
+P +N+ R+P GR E EDP + G A ++V+G+Q V +C
Sbjct: 116 LAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQS--------------QGVGAC 161
Query: 225 CKHYAAYDVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNGIP 284
KH+ A N + +R D V+E+ + E +LR FE+ VK+ SVM +YN++NG
Sbjct: 162 IKHFVA----NNQETNRMVVDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYNKLNGKY 217
Query: 285 SCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDC- 343
+ LL + +R EW G++++ A D + LKAG DL
Sbjct: 218 CSQNEWLLKKVLREEWGFEGFVMS---------------AWYAGDNPVEQLKAGNDLIMP 262
Query: 344 GQYYTNFTG---------NAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSPQYVSLGKQ 394
G+ Y T A+++GK+ E +D+ ++ + VL+ F Y K
Sbjct: 263 GKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFK---NYRYSNKP 319
Query: 395 DICSDENIELAAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYAGIP 454
D+ +++ ++A EA EG+VLL +N L ++ +A+ G T+
Sbjct: 320 DL--EKHAKVAYEAGAEGVVLL---RNEEALPLSENSKIALFGTGQIETIKGGTGSGDTH 374
Query: 455 CRY-MSPIAGFSGYA--------------------NVTYKTGCDD----VACKSNNSIFX 489
RY +S + G YK D + K +
Sbjct: 375 PRYAISILEGIKERGLNFDEELAKTYEDYIKKMRETEEYKPRRDSWGTIIKPKLPENFLS 434
Query: 490 XXXXXXXXXXTIILAGLDLSVEAESLDRE----DLWLPGYQTQLINQVAEV--AKGPVIL 543
+ + + E DR+ D +L +T LI V+ +G ++
Sbjct: 435 EKEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVI 494
Query: 544 VIMSAGGVDIAFAETNTNIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITWYNGDYV 603
V+++ G + + IL G+E GR +ADV+ G+ NP G+LP T + DY
Sbjct: 495 VLLNIGS-PVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDYS 552
Query: 604 QMLPLTSMPLRPVDS-----------LGYPGRTYKFYNGPTLYPFGYGLSYTQFKYNLLS 652
+P + P P D+ +GY R Y + Y FGYGLSYT F+Y+ L+
Sbjct: 553 D-VPSWTFPGEPKDNPQKVVYEEDIYVGY--RYYDTFGVEPAYEFGYGLSYTTFEYSDLN 609
Query: 653 FT 654
+
Sbjct: 610 VS 611
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 124/450 (27%), Positives = 205/450 (45%), Gaps = 93/450 (20%)
Query: 61 YSIRVKDLVSRMTLDEKV-----------QQLGDFAHGVPRLGLPQYEWWSEALHGVSNV 109
Y+ R +LV++MTLDEK+ Q +G + GVPRLG+P+ ++ +G+ V
Sbjct: 50 YTSRAAELVAQMTLDEKISFVHWALDPDRQNVG-YLPGVPRLGIPELRA-ADGPNGIRLV 107
Query: 110 GPGTHFDDVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYN---LGRAGLTYWS 166
G AT+ P + ++F++++ G+ + + RA+ LG
Sbjct: 108 GQT---------ATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMVLG-------- 150
Query: 167 PNINVARDPRWGRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCK 226
P +N R P GR ET EDP V R AV ++G+Q + + K
Sbjct: 151 PMMNNIRVPHGGRNYETFSEDPLVSSRTAVAQIKGIQGA--------------GLMTTAK 196
Query: 227 HYAAYDVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNGIPSC 286
H+AA + +N +R+ +A V EQ + E FE K G A+S MC+YN +NG PSC
Sbjct: 197 HFAANNQEN----NRFSVNANVDEQTLREIEFPAFEASSKAG-AASFMCAYNGLNGKPSC 251
Query: 287 ADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDCG-- 344
+ +LLN +R +W G++++D +LA DA+ + GLD + G
Sbjct: 252 GNDELLNNVLRTQWGFQGWVMSD------------WLATPGTDAITK----GLDQEMGVE 295
Query: 345 --------------QYYTNFTGNAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSPQYVS 390
+++ AV G V E + +S + + + + G +P
Sbjct: 296 LPGDVPKGEPSPPAKFFGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATP--AP 353
Query: 391 LGKQDICSDENIELAAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHA-NATVAMIGN 449
++D + + + + A G VLL+N+ LPL K++AV+GP A + V +G+
Sbjct: 354 RPERDKAGAQAV--SRKVAENGAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGS 411
Query: 450 YAGIPCRYMSPI----AGFSGYANVTYKTG 475
+P +P+ A A VTY+TG
Sbjct: 412 AHVVPDSAAAPLDTIKARAGAGATVTYETG 441
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 102/246 (41%), Gaps = 52/246 (21%)
Query: 513 ESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIAFAETNTNIKAILWAGYPG 572
E +DR +L LPG Q +LI+ VA+ P +V+++ G + + T +W YPG
Sbjct: 579 EGVDRPNLSLPGTQDKLISAVADA--NPNTIVVLNTGSSVLMPWLSKTRAVLDMW--YPG 634
Query: 573 EEGGRAIADVVFGKFNPGGRLPITW---YNGDYVQMLPLTSMP-------LRPVDSLGYP 622
+ G A A +++G NP G+L ++ N V P TS P R +GY
Sbjct: 635 QAGAEATAALLYGDVNPSGKLTQSFPAAENQHAVAGDP-TSYPGVDNQQTYREGIHVGY- 692
Query: 623 GRTYKFYNGPTLYPFGYGLSYTQFKYNLLSFTKTIQVNLNKLQHCRNLNYTSDASKTRCP 682
R + N L+PFG+GLSYT F + + +T L
Sbjct: 693 -RWFDKENVKPLFPFGHGLSYTSFTQSAPTVVRTSTGGL--------------------- 730
Query: 683 GVLVNDLRCDDYFEFKVDFQNVGSTDGSDVVIVY-SKPPAEIAATYIKQVIGFQRVFVRA 741
+ V +N G G +VV Y P A K+++G+ +V + A
Sbjct: 731 -------------KVTVTVRNSGKRAGQEVVQAYLGASPNVTAPQAKKKLVGYTKVSLAA 777
Query: 742 GRNKRI 747
G K +
Sbjct: 778 GEAKTV 783
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 177/713 (24%), Positives = 293/713 (41%), Gaps = 140/713 (19%)
Query: 121 GATSFPTVILTTASFNESLWKKIGQAVSTEARA---MYNLGRAGLTYWSPNINVARDPRW 177
G+T+F + ++++ +L ++ GQ + E +A LG P + + P+
Sbjct: 72 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVA----GP---LGKTPQG 124
Query: 178 GRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWK 237
GR E G DP++ G + G+Q V V + KHY + N +
Sbjct: 125 GRNWEGFGVDPYLTGIAMGQTINGIQSV--------------GVQATAKHY----ILNEQ 166
Query: 238 GVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNGIPSCADPKLLNQTVR 297
++R + ++ + E + PF V + + +SVMCSYN+VN +C D L ++
Sbjct: 167 ELNRETISSNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLK 225
Query: 298 GEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDCGQYYTNFTG----- 352
+ GY++ D ++ V Q+ +GLD+ T+F G
Sbjct: 226 DQLGFPGYVMTDWNAQHTTV---------------QSANSGLDMSMPG--TDFNGNNRLW 268
Query: 353 -----NAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSPQ--YVSLG-KQDICSDENIEL 404
NAV +V + +D + T ++ + G Q Y S +++ + +
Sbjct: 269 GPALTNAVNSNQVPTSRVDD----MVTRILAAWYLTGQDQAGYPSFNISRNVQGNHKTNV 324
Query: 405 AAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYA-GIP------CRY 457
A AR+GIVLLKND N LPL K ++AVVG + A+IGN+A P C
Sbjct: 325 RA-IARDGIVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDD 376
Query: 458 MSPIAGF-SGYANVTY------------KTGCDDVACKSNNSIFXXXXXXXXXXXTIILA 504
+ G+ SG N Y + V + ++ I+
Sbjct: 377 GALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIVFI 436
Query: 505 GLD-----LSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIAFAETN 559
D ++VE + DR +L P + + Q A VI+V+ S G + +
Sbjct: 437 TADSGEGYITVEGNAGDRNNL-DPWHNGNALVQAVAGANSNVIVVVHSVGAIILEQILAL 495
Query: 560 TNIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITW------YNGDYVQMLPLTSMPL 613
+KA++WAG P +E G A+ DV++G +P G+L T YN V +
Sbjct: 496 PQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSEG 555
Query: 614 RPVDSLGYPGRTYKFYNGPTLYP---FGYGLSYTQFKYNLLSFTKTIQVNLNKLQHCRNL 670
+D YK ++ + P FGYGLSYT+F Y+ LS T +
Sbjct: 556 LFID--------YKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAK------------ 595
Query: 671 NYTSDASKTRCPGVLVNDLRCDDYFE----FKVDFQNVGSTDGSDVVIVYSKPPAEIAAT 726
+ A+ PG D F+ VD N G G++V +Y P+ T
Sbjct: 596 --SGPATGAVVPG------GPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRT 647
Query: 727 YIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAANT-LLPAGEHTIFVG 778
KQ+ GF ++ + G++ F + L+ D A+ ++P+G I VG
Sbjct: 648 PPKQLRGFAKLNLTPGQSGTATFNIRR-RDLSYWDTASQKWVVPSGSFGISVG 699
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 178/713 (24%), Positives = 293/713 (41%), Gaps = 140/713 (19%)
Query: 121 GATSFPTVILTTASFNESLWKKIGQAVSTEARA---MYNLGRAGLTYWSPNINVARDPRW 177
G+T+F + ++++ +L ++ GQ + E +A LG P + + P+
Sbjct: 71 GSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGIHVILGPVA----GP---LGKTPQG 123
Query: 178 GRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWK 237
GR E G DP++ G + G+Q V V + KHY + N +
Sbjct: 124 GRNWEGFGVDPYLTGIAMGQTINGIQSV--------------GVQATAKHY----ILNEQ 165
Query: 238 GVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNGIPSCADPKLLNQTVR 297
++R + ++ + E + PF V + + +SVMCSYN+VN +C D L ++
Sbjct: 166 ELNRETISSNPDDRTLHELYTWPFADAV-QANVASVMCSYNKVNTTWACEDQYTLQTVLK 224
Query: 298 GEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDCGQYYTNFTG----- 352
+ GY++ D ++ V Q+ +GLD+ T+F G
Sbjct: 225 DQLGFPGYVMTDWNAQHTTV---------------QSANSGLDMSMPG--TDFNGNNRLW 267
Query: 353 -----NAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSPQ--YVSLG-KQDICSDENIEL 404
NAV +V + +D + T ++ + G Q Y S +++ + +
Sbjct: 268 GPALTNAVNSNQVPTSRVDD----MVTRILAAWYLTGQDQAGYPSFNISRNVQGNHKTNV 323
Query: 405 AAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYA-GIP------CRY 457
A AR+GIVLLKND N LPL K ++AVVG + A+IGN+A P C
Sbjct: 324 RA-IARDGIVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDD 375
Query: 458 MSPIAGF-SGYANVTYKTGCDD------------VACKSNNSIFXXXXXXXXXXXTIILA 504
+ G+ SG N Y D V + ++ I+
Sbjct: 376 GALGMGWGSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGASAARGKDVAIVFI 435
Query: 505 GLD-----LSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIAFAETN 559
D ++VE + DR +L P + + Q A VI+V+ S G + +
Sbjct: 436 TADSGEGYITVEGNAGDRNNL-DPWHNGNALVQAVAGANSNVIVVVHSVGAIILEQILAL 494
Query: 560 TNIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITW------YNGDYVQMLPLTSMPL 613
+KA++WAG P +E G A+ DV++G +P G+L T YN V +
Sbjct: 495 PQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRIVSGGSDSFSEG 554
Query: 614 RPVDSLGYPGRTYKFYNGPTLYP---FGYGLSYTQFKYNLLSFTKTIQVNLNKLQHCRNL 670
+D YK ++ + P FGYGLSYT+F Y+ LS T +
Sbjct: 555 LFID--------YKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAK------------ 594
Query: 671 NYTSDASKTRCPGVLVNDLRCDDYFE----FKVDFQNVGSTDGSDVVIVYSKPPAEIAAT 726
+ A+ PG D F+ VD N G G++V +Y P+ T
Sbjct: 595 --SGPATGAVVPG------GPSDLFQNVATVTVDIANSGQVTGAEVAQLYITYPSSAPRT 646
Query: 727 YIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAANT-LLPAGEHTIFVG 778
KQ+ GF ++ + G++ F + L+ D A+ ++P+G I VG
Sbjct: 647 PPKQLRGFAKLNLTPGQSGTATFNIRR-RDLSYWDTASQKWVVPSGSFGISVG 698
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 150/552 (27%), Positives = 245/552 (44%), Gaps = 67/552 (12%)
Query: 98 WWSEALHGVSNVGPGTHFDDVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNL 157
W ++A+HG SNV GAT FP I A+ + L K+IGQA + E A
Sbjct: 107 WGTDAMHGHSNV----------YGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA---- 152
Query: 158 GRAGLTY-WSPNINVARDPRWGRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNS 216
G+ + ++P + V RD RWGR E+ EDP +V RYA V G+Q D+ +
Sbjct: 153 --TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQG--------DVGA 202
Query: 217 RPLKVS---SCCKHYAAYDVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSV 273
LK S + KH+ D +GVDR + + E+ + + + + +G SV
Sbjct: 203 DFLKGSNRIATAKHFVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSV 258
Query: 274 MCSYNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQ 333
M S+N NG D LL ++ + G++V+D ++ HKF+ + AQ
Sbjct: 259 MASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNA-------HKFVEGCDLEQCAQ 311
Query: 334 TLKAGLD-LDCGQYYTNFTGNAVQQ---GKVKETDIDKSLKYLYTVLMRLGFFDGSPQYV 389
+ AG+D + +++ F N V+Q G + E+ I+ +++ +R G F S
Sbjct: 312 AINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSA 371
Query: 390 ---SLGKQDICSDENIELAAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAM 446
S Q + + E+ LA EA R+ +VLLKN+++ LP+ ++ + V G ANA
Sbjct: 372 RPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKAS--SRILVAGKGANAINMQ 429
Query: 447 IGNYAGIPCRYMSPIAGFSGYANVTYK-TGCDDVACKSNNSIFXXXXXXXXXXXTIILAG 505
G ++ + S + N T +G K+ I + +
Sbjct: 430 AGGWS---VSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVV 486
Query: 506 LDLSVEAESLDREDLWLPGYQTQ----LINQVAEVAKGPVILVIMSAGGVDIAFAETNTN 561
+ AE +L ++T+ L+ Q+ + PV+ V +S + + E N +
Sbjct: 487 IGEEPYAEWFGDIELLEFQHETKHALALLKQL-KADNIPVVTVFLSGRPLWVN-KELNAS 544
Query: 562 IKAILWAGYPGEEGGRAIADVVF----GK--FNPGGRLPITWYNGDYVQMLPLTSMPLRP 615
A + A PG E G +ADV+ GK F+ G+L +W D L L P
Sbjct: 545 -DAFVAAWLPGSE-GEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADYDP 602
Query: 616 VDSLGYPGRTYK 627
+ + GY G TY+
Sbjct: 603 LFAYGY-GLTYQ 613
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 150/552 (27%), Positives = 245/552 (44%), Gaps = 67/552 (12%)
Query: 98 WWSEALHGVSNVGPGTHFDDVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNL 157
W ++A+HG SNV GAT FP I A+ + L K+IGQA + E A
Sbjct: 107 WGTDAMHGHSNV----------YGATLFPHNIGLGAARDTDLIKRIGQATAKEVAA---- 152
Query: 158 GRAGLTY-WSPNINVARDPRWGRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNS 216
G+ + ++P + V RD RWGR E+ EDP +V RYA V G+Q D+ +
Sbjct: 153 --TGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQG--------DVGA 202
Query: 217 RPLKVS---SCCKHYAAYDVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSV 273
LK S + KH+ D +GVDR + + E+ + + + + +G SV
Sbjct: 203 DFLKGSNRIATAKHFVG-DGGTERGVDR--GNTLIDEKGLRDIHSAGYFSAINQG-VQSV 258
Query: 274 MCSYNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQ 333
M S+N NG D LL ++ + G++V+D ++ HKF+ + AQ
Sbjct: 259 MASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNA-------HKFVEGCDLEQCAQ 311
Query: 334 TLKAGLD-LDCGQYYTNFTGNAVQQ---GKVKETDIDKSLKYLYTVLMRLGFFDGSPQYV 389
+ AG+D + +++ F N V+Q G + E+ I+ +++ +R G F S
Sbjct: 312 AINAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVFTKSKPSA 371
Query: 390 ---SLGKQDICSDENIELAAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAM 446
S Q + + E+ LA EA R+ +VLLKN+++ LP+ ++ + V G ANA
Sbjct: 372 RPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKAS--SRILVAGKGANAINMQ 429
Query: 447 IGNYAGIPCRYMSPIAGFSGYANVTYK-TGCDDVACKSNNSIFXXXXXXXXXXXTIILAG 505
G ++ + S + N T +G K+ I + +
Sbjct: 430 AGGWS---VSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSESGEYTSKPDVAIVV 486
Query: 506 LDLSVEAESLDREDLWLPGYQTQ----LINQVAEVAKGPVILVIMSAGGVDIAFAETNTN 561
+ AE +L ++T+ L+ Q+ + PV+ V +S + + E N +
Sbjct: 487 IGEEPYAEWFGDIELLEFQHETKHALALLKQL-KADNIPVVTVFLSGRPLWVN-KELNAS 544
Query: 562 IKAILWAGYPGEEGGRAIADVVF----GK--FNPGGRLPITWYNGDYVQMLPLTSMPLRP 615
A + A PG E G +ADV+ GK F+ G+L +W D L L P
Sbjct: 545 -DAFVAAWLPGSE-GEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNLNDADYDP 602
Query: 616 VDSLGYPGRTYK 627
+ + GY G TY+
Sbjct: 603 LFAYGY-GLTYQ 613
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 120 bits (300), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/417 (25%), Positives = 185/417 (44%), Gaps = 68/417 (16%)
Query: 65 VKDLVSRMTLDEKVQQLG--DFAH--GVPRLGLPQYEWWSEALHGVSNVGPGTHFDDVIP 120
V+ L+S + DEK+ L DF H + RLG+P S+ +G+ GT F D +P
Sbjct: 6 VEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----GTKFFDGVP 60
Query: 121 GATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTYWSPNINVARDPRWGRI 180
FP ++F+ L + G+ ++ E+ + + P N+ R P GR
Sbjct: 61 SGC-FPNGTGLASTFDRDLLETAGKLMAKES-----IAKNAAVILGPTTNMQRGPLGGRG 114
Query: 181 TETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVD 240
E+ EDP++ G + V+G+Q EG +++ KH+ D+++
Sbjct: 115 FESFSEDPYLAGMATSSVVKGMQG-EG-------------IAATVKHFVCNDLED----Q 156
Query: 241 RYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNGIPSCADPKLLNQTVRGEW 300
R+ ++ V+E+ + E +L PF + VK + +M +YN+VNG KLL +R EW
Sbjct: 157 RFSSNSIVSERALREIYLEPFRLAVKHANPVCIMTAYNKVNGEHCSQSKKLLIDILRDEW 216
Query: 301 DLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDC-------GQYYTNFTGN 353
G +++D A +K GLD++ + + + N
Sbjct: 217 KWDGMLMSDWFGTYT---------------TAAAIKNGLDIEFPGPTRWRTRALVSHSLN 261
Query: 354 AVQQGKVKETD-----IDKSLKYLYTVLMRLGFFDGSPQYVSLGKQDICSDENIELAAEA 408
+ +Q ++ D + K +K++ L + G + P+ S + E +L +
Sbjct: 262 SREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVENGPESTSNN-----TKETSDLLRKI 316
Query: 409 AREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYAGIPCRY-MSPIAGF 464
A + IVLLKN N LPL K + V+GP+A A + G A + Y +SP G
Sbjct: 317 AADSIVLLKNKNNILPLK--KEDNIIVIGPNAKAKTSSGGGSASMNSYYVVSPYEGI 371
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 120/286 (41%), Gaps = 49/286 (17%)
Query: 501 IILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIAFAETNT 560
+++ GL+ E E DRE++ LP +L+ V + A ++V S V+ + E
Sbjct: 578 VLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLK-ANPNTVIVNQSGTPVEFPWLE--- 633
Query: 561 NIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITW--YNGDYVQMLPLTSMPLRPVDS 618
+ A++ A Y G E G AIADV++G P G+L ++W D L + R +
Sbjct: 634 DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYG 693
Query: 619 ----LGYPGRTYKFYNGPTLYPFGYGLSYTQFKYNLLSFTKTIQVNLNKLQHCRNLNYTS 674
+GY R Y+ +PFGYGLSYT F+ ++ F T
Sbjct: 694 EDIFVGY--RYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT------------------ 733
Query: 675 DASKTRCPGVLVNDLRCDDYFEFKVDFQNVGST-DGSDVVIVYSKPPAEIAATYIKQVIG 733
DD VD +N G GS+VV VY + +K++ G
Sbjct: 734 -----------------DDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKG 776
Query: 734 FQRVFVRAGRNKRIKFVFNACKSLNIVDYAANTL-LPAGEHTIFVG 778
F++V + G K + +++ + + AGE+ + VG
Sbjct: 777 FEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVG 822
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 119/442 (26%), Positives = 194/442 (43%), Gaps = 77/442 (17%)
Query: 53 LFCDSSLPYSIRVKDLVSRMTLDEKVQQL------------------GDFAHG---VPRL 91
L+ D++ P RV DL+ RMTL EK+ Q+ G G VPR
Sbjct: 4 LYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRK 63
Query: 92 GLPQYEWWS----------------EALHGVSNVGPGTHFDDVIPGATSFPTVILTTASF 135
G EW ++G+ V H + + GAT FP + A+
Sbjct: 64 GATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAV----HGQNNVYGATIFPHNVGLGATR 119
Query: 136 NESLWKKIGQAVSTEARAMYNLGRAGLTY-WSPNINVARDPRWGRITETPGEDPFVVGRY 194
+ L K+IG+A + E RA G+ Y ++P I V RDPRWGR E+ ED +V +
Sbjct: 120 DPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QS 172
Query: 195 AVNYVRGLQ-DV-EGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVDRYHFDARVTEQD 252
+ GLQ DV + + + KV++C KH+ V + VD + + + ++
Sbjct: 173 MTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHF----VGDGGTVDGINENNTIINRE 228
Query: 253 MEETFLRPFEMCVKEGDASSVMCSYNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDS 312
P + S+VM SY+ NG+ A+ L+ ++ G++++D +
Sbjct: 229 GLMNIHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEG 288
Query: 313 IQVMVDNHKFLADSKED---AVAQTLKAGLDL-----DCGQYYTNFTGNAVQQGKVKETD 364
I + + D +V ++ AGLD+ Q+ + TG+ V G + +
Sbjct: 289 ID------RITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGH-VNGGVIPMSR 341
Query: 365 IDKSLKYLYTVLMRLGFFDGSPQYVSLGKQDICSDENIELAAEAAREGIVLLKN-----D 419
ID ++ + V +G F+ ++ +Q + E+ +LA EAAR+ +VLLKN D
Sbjct: 342 IDDAVTRILRVKFTMGLFENPYADPAMAEQ-LGKQEHRDLAREAARKSLVLLKNGKTSTD 400
Query: 420 QNTLPLNSAKVKTVAVVGPHAN 441
LPL K + V G HA+
Sbjct: 401 APLLPL-PKKAPKILVAGSHAD 421
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 564 AILWAGYPGEEGGRAIADVVFGKFNPGGRLPITWYNGDYVQMLPL 608
A++ A PG EG + + D +FG F GRLP TW+ V LP+
Sbjct: 539 ALVAAWLPGSEG-QGVTDALFGDFGFTGRLPRTWFKS--VDQLPM 580
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 119/442 (26%), Positives = 194/442 (43%), Gaps = 77/442 (17%)
Query: 53 LFCDSSLPYSIRVKDLVSRMTLDEKVQQL------------------GDFAHG---VPRL 91
L+ D++ P RV DL+ RMTL EK+ Q+ G G VPR
Sbjct: 4 LYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVPRK 63
Query: 92 GLPQYEWWS----------------EALHGVSNVGPGTHFDDVIPGATSFPTVILTTASF 135
G EW ++G+ V H + + GAT FP + A+
Sbjct: 64 GATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAV----HGQNNVYGATIFPHNVGLGATR 119
Query: 136 NESLWKKIGQAVSTEARAMYNLGRAGLTY-WSPNINVARDPRWGRITETPGEDPFVVGRY 194
+ L K+IG+A + E RA G+ Y ++P I V RDPRWGR E+ ED +V +
Sbjct: 120 DPYLVKRIGEATALEVRA------TGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIV-QS 172
Query: 195 AVNYVRGLQ-DV-EGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVDRYHFDARVTEQD 252
+ GLQ DV + + + KV++C KH+ V + VD + + + ++
Sbjct: 173 MTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHF----VGDGGTVDGINENNTIINRE 228
Query: 253 MEETFLRPFEMCVKEGDASSVMCSYNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDS 312
P + S+VM SY+ NG+ A+ L+ ++ G++++D +
Sbjct: 229 GLMNIHMPAYKNAMDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEG 288
Query: 313 IQVMVDNHKFLADSKED---AVAQTLKAGLDL-----DCGQYYTNFTGNAVQQGKVKETD 364
I + + D +V ++ AGLD+ Q+ + TG+ V G + +
Sbjct: 289 ID------RITTPAGSDYSYSVKASILAGLDMIMVPNKYQQFISILTGH-VNGGVIPMSR 341
Query: 365 IDKSLKYLYTVLMRLGFFDGSPQYVSLGKQDICSDENIELAAEAAREGIVLLKN-----D 419
ID ++ + V +G F+ ++ +Q + E+ +LA EAAR+ +VLLKN D
Sbjct: 342 IDDAVTRILRVKFTMGLFENPYADPAMAEQ-LGKQEHRDLAREAARKSLVLLKNGKTSTD 400
Query: 420 QNTLPLNSAKVKTVAVVGPHAN 441
LPL K + V G HA+
Sbjct: 401 APLLPL-PKKAPKILVAGSHAD 421
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 564 AILWAGYPGEEGGRAIADVVFGKFNPGGRLPITWYNGDYVQMLPLT--SMPLRPVDSLGY 621
A++ A PG EG + + D +FG F GRLP TW+ V LP+ P+ LGY
Sbjct: 539 ALVAAWLPGSEG-QGVTDALFGDFGFTGRLPRTWFKS--VDQLPMNVGDAHYDPLFRLGY 595
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 101/394 (25%), Positives = 171/394 (43%), Gaps = 67/394 (17%)
Query: 65 VKDLVSRMTLDEKVQQLG--DFAH--GVPRLGLPQYEWWSEALHGVSNVGPGTHFDDVIP 120
V+ L+S + DEK+ L DF H + RLG+P S+ +G+ GT F D +P
Sbjct: 6 VEQLLSELNQDEKISLLSAVDFWHTKKIERLGIPAVRV-SDGPNGIR----GTKFFDGVP 60
Query: 121 GATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTYWSPNINVARDPRWGRI 180
FP ++F+ L + G+ + E+ + + P N R P GR
Sbjct: 61 SGC-FPNGTGLASTFDRDLLETAGKLXAKES-----IAKNAAVILGPTTNXQRGPLGGRG 114
Query: 181 TETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVD 240
E+ EDP++ G + V+G Q EG +++ KH+ D+++
Sbjct: 115 FESFSEDPYLAGXATSSVVKGXQG-EG-------------IAATVKHFVCNDLED----Q 156
Query: 241 RYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNGIPSCADPKLLNQTVRGEW 300
R+ ++ V+E+ + E +L PF + VK + + +YN+VNG KLL +R EW
Sbjct: 157 RFSSNSIVSERALREIYLEPFRLAVKHANPVCIXTAYNKVNGEHCSQSKKLLIDILRDEW 216
Query: 301 DLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDC-------GQYYTNFTGN 353
G + +D A +K GLD++ + + + N
Sbjct: 217 KWDGXLXSDWFGTYT---------------TAAAIKNGLDIEFPGPTRWRTRALVSHSLN 261
Query: 354 AVQQGKVKETD-----IDKSLKYLYTVLMRLGFFDGSPQYVSLGKQDICSDENIELAAEA 408
+ +Q ++ D + K +K++ L + G + P+ S + E +L +
Sbjct: 262 SREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIVENGPESTSNN-----TKETSDLLRKI 316
Query: 409 AREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANA 442
A + IVLLKN N LPL K + V+GP+A A
Sbjct: 317 AADSIVLLKNKNNILPLK--KEDNIIVIGPNAKA 348
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 119/286 (41%), Gaps = 49/286 (17%)
Query: 501 IILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIAFAETNT 560
+++ GL+ E E DRE+ LP +L+ V + A ++V S V+ + E
Sbjct: 578 VLIIGLNGEWETEGYDRENXDLPKRTNELVRAVLK-ANPNTVIVNQSGTPVEFPWLE--- 633
Query: 561 NIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITW--YNGDYVQMLPLTSMPLRPVDS 618
+ A++ A Y G E G AIADV++G P G+L ++W D L + R +
Sbjct: 634 DANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFLNFKTEFGRVIYG 693
Query: 619 ----LGYPGRTYKFYNGPTLYPFGYGLSYTQFKYNLLSFTKTIQVNLNKLQHCRNLNYTS 674
+GY R Y+ +PFGYGLSYT F+ ++ F T
Sbjct: 694 EDIFVGY--RYYEKLQRKVAFPFGYGLSYTTFELDISDFKVT------------------ 733
Query: 675 DASKTRCPGVLVNDLRCDDYFEFKVDFQNVGST-DGSDVVIVYSKPPAEIAATYIKQVIG 733
DD VD +N G GS+VV VY + +K++ G
Sbjct: 734 -----------------DDKIAISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKG 776
Query: 734 FQRVFVRAGRNKRIKFVFNACKSLNIVDYAANTL-LPAGEHTIFVG 778
F++V + G K + +++ + + AGE+ + VG
Sbjct: 777 FEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVEAGEYLVSVG 822
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 121/263 (46%), Gaps = 47/263 (17%)
Query: 221 VSSCCKHYAAY---DVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSY 277
++S KH+ + DVD+ G+ ++ + E L PF+ + G A VM ++
Sbjct: 216 IASALKHFPGHGDTDVDSHYGLPLVSHG----QERLREVELYPFQKAIDAG-ADMVMTAH 270
Query: 278 ------------NRVNG----IPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHK 321
++++G +P+ K++ +R E +G IV D +++ + D+
Sbjct: 271 VQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHF- 329
Query: 322 FLADSKEDAVAQTLKAGLD----------LDCGQYYTNFT---GNAVQQGKVKETDIDKS 368
+E+AV +KAG+D L Q + AV+ G + E I+ S
Sbjct: 330 ----GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNS 385
Query: 369 LKYLYTVLMRLGFF-----DGSPQYVSLGKQDICSDENIELAAEAAREGIVLLKNDQNTL 423
++ + ++ ++ G + D + + ++ K+ + S ++++ + A + + +LKN+Q+TL
Sbjct: 386 VERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTL 445
Query: 424 PLNSAKVKTVAVVGPHANATVAM 446
P K + +V P+ T ++
Sbjct: 446 PFKPKKGSRILIVAPYEEQTASI 468
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 121/263 (46%), Gaps = 47/263 (17%)
Query: 221 VSSCCKHYAAY---DVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSY 277
++S KH+ + DVD+ G+ ++ + E L PF+ + G A VM ++
Sbjct: 220 IASALKHFPGHGDTDVDSHYGLPLVSHG----QERLREVELYPFQKAIDAG-ADMVMTAH 274
Query: 278 ------------NRVNG----IPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHK 321
++++G +P+ K++ +R E +G IV + +++ + D+
Sbjct: 275 VQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHF- 333
Query: 322 FLADSKEDAVAQTLKAGLD----------LDCGQYYTNFT---GNAVQQGKVKETDIDKS 368
+E+AV +KAG+D L Q + AV+ G + E I+ S
Sbjct: 334 ----GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNS 389
Query: 369 LKYLYTVLMRLGFF-----DGSPQYVSLGKQDICSDENIELAAEAAREGIVLLKNDQNTL 423
++ + ++ ++ G + D + + ++ K+ + S ++++ + A + + +LKN+Q+TL
Sbjct: 390 VERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTL 449
Query: 424 PLNSAKVKTVAVVGPHANATVAM 446
P K + +V P+ T ++
Sbjct: 450 PFKPKKGSRILIVAPYEEQTASI 472
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 121/263 (46%), Gaps = 47/263 (17%)
Query: 221 VSSCCKHYAAY---DVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSY 277
++S KH+ + DVD+ G+ ++ + E L PF+ + G A VM ++
Sbjct: 190 IASALKHFPGHGDTDVDSHYGLPLVSHG----QERLREVELYPFQKAIDAG-ADMVMTAH 244
Query: 278 ------------NRVNG----IPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHK 321
++++G +P+ K++ +R E +G IV + +++ + D+
Sbjct: 245 VQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTNALNMKAIADHF- 303
Query: 322 FLADSKEDAVAQTLKAGLD----------LDCGQYYTNFT---GNAVQQGKVKETDIDKS 368
+E+AV +KAG+D L Q + AV+ G + E I+ S
Sbjct: 304 ----GQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNS 359
Query: 369 LKYLYTVLMRLGFF-----DGSPQYVSLGKQDICSDENIELAAEAAREGIVLLKNDQNTL 423
++ + ++ ++ G + D + + ++ K+ + S ++++ + A + + +LKN+Q+TL
Sbjct: 360 VERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTL 419
Query: 424 PLNSAKVKTVAVVGPHANATVAM 446
P K + +V P+ T ++
Sbjct: 420 PFKPKKGSRILIVAPYEEQTASI 442
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 221 VSSCCKHYAAYDVDNWKGVDRYHFDARVTEQ--DMEETFLRPFEMCVKEGDA-SSVMCSY 277
V+ C KH+ + + D + RV++ +++ L PF + E A + Y
Sbjct: 173 VAPCAKHFPGHGDTHQ---DSHLALPRVSKSRAELDAGELAPFRALLPETPAIXTAHIVY 229
Query: 278 NRVNG-IPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLK 336
+ ++ P+ P++L +R EW G IV D Q + N+ + +A + L+
Sbjct: 230 DALDAEHPATLSPRILTGLLREEWGYDGVIVTDSXGXQAIDANY-----GRGEAAVRALR 284
Query: 337 AGLDL 341
AG DL
Sbjct: 285 AGADL 289
>pdb|2XYD|A Chain A, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
pdb|2XYD|B Chain B, Human Angiotenisn Converting Enzyme N-Domain In Complex
With Phosphinic Tripeptide
Length = 610
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 29/110 (26%)
Query: 5 VSSLLCFSLSIALLVFSTNAVDANGSSSPVFVCDPGRFSKLGLQMSSFLFCDSSLPYSIR 64
VS +L F AL G P+ CD R +K G ++ L SS P+
Sbjct: 503 VSFVLQFQFHEAL-------CKEAGYEGPLHQCDIYRSTKAGAKLRKVLRAGSSRPWQEV 555
Query: 65 VKDLVSRMTLD----------------EKVQQLGDFAHGVPRLGLPQYEW 98
+KD+V LD E+ QQ G+ LG P+Y+W
Sbjct: 556 LKDMVGLDALDAQPLLKYFQLVTQWLQEQNQQNGEV------LGWPEYQW 599
>pdb|2C6N|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6N|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain With Lisinopril
pdb|2C6F|A Chain A, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
pdb|2C6F|B Chain B, Structure Of Human Somatic Angiontensin-I Converting
Enzyme N Domain
Length = 612
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 22/86 (25%)
Query: 29 GSSSPVFVCDPGRFSKLGLQMSSFLFCDSSLPYSIRVKDLVSRMTLD------------- 75
G P+ CD R +K G ++ L SS P+ +KD+V LD
Sbjct: 520 GYEGPLHQCDIYRSTKAGAKLRKVLQAGSSRPWQEVLKDMVGLDALDAQPLLKYFQPVTQ 579
Query: 76 ---EKVQQLGDFAHGVPRLGLPQYEW 98
E+ QQ G+ LG P+Y+W
Sbjct: 580 WLQEQNQQNGEV------LGWPEYQW 599
>pdb|3NXQ|A Chain A, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
pdb|3NXQ|B Chain B, Angiotensin Converting Enzyme N Domain Glycsoylation
Mutant (Ndom389) In Complex With Rxp407
Length = 629
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 29/110 (26%)
Query: 5 VSSLLCFSLSIALLVFSTNAVDANGSSSPVFVCDPGRFSKLGLQMSSFLFCDSSLPYSIR 64
VS +L F AL G P+ CD R +K G ++ L SS P+
Sbjct: 503 VSFVLQFQFHEAL-------CKEAGYEGPLHQCDIYRSTKAGAKLRKVLRAGSSRPWQEV 555
Query: 65 VKDLVSRMTLD----------------EKVQQLGDFAHGVPRLGLPQYEW 98
+KD+V LD E+ QQ G+ LG P+Y+W
Sbjct: 556 LKDMVGLDALDAQPLLKYFQLVTQWLQEQNQQNGEV------LGWPEYQW 599
>pdb|2PHC|B Chain B, Crystal Structure Of Conserved Uncharacterized Protein
Ph0987 From Pyrococcus Horikoshii
Length = 225
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 548 AGGVDIAFAETNTNIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITWYNGDYVQMLP 607
AG V IA +T W G R I + FNPG P GDYV+ +P
Sbjct: 158 AGSVGIAGKQTG-------WYAIESPGGWRIIGRIPLRTFNPGKVPPSIVLPGDYVKFVP 210
Query: 608 L 608
+
Sbjct: 211 I 211
>pdb|2ZD2|A Chain A, D202k Mutant Of P. Denitrificans Atp12p
pdb|2ZD2|B Chain B, D202k Mutant Of P. Denitrificans Atp12p
Length = 234
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 419 DQNTLPLNSAKVKTVAVVGPHANATVAMIGNYAG 452
D N +PL + + V P +A AM+G+Y G
Sbjct: 61 DPNAMPLTRSANSAIEKVAPQFDAVAAMLGDYGG 94
>pdb|2P4X|A Chain A, Crystal Structure Of Atp12 From Paracoccus Denitrificans
pdb|2P4X|B Chain B, Crystal Structure Of Atp12 From Paracoccus Denitrificans
pdb|2R31|A Chain A, Crystal Structure Of Atp12p From Paracoccus Denitrificans
Length = 239
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 419 DQNTLPLNSAKVKTVAVVGPHANATVAMIGNYAG 452
D N +PL + + V P +A AM+G+Y G
Sbjct: 65 DPNAMPLTRSANSAIEKVAPQFDAVAAMLGDYGG 98
>pdb|1C3X|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1C3X|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With 8-Iodo-Guanine
pdb|1QE5|A Chain A, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|B Chain B, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
pdb|1QE5|C Chain C, Purine Nucleoside Phosphorylase From Cellulomonas Sp. In
Complex With Phosphate
Length = 266
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 184 PGEDPFVVGRYAVNYVRGLQDVEGHENATDLNS 216
P DPF+V R A +++ VEGH+ A L S
Sbjct: 6 PATDPFLVARAAADHIAQATGVEGHDMALVLGS 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,049,368
Number of Sequences: 62578
Number of extensions: 1034405
Number of successful extensions: 2116
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2021
Number of HSP's gapped (non-prelim): 52
length of query: 792
length of database: 14,973,337
effective HSP length: 107
effective length of query: 685
effective length of database: 8,277,491
effective search space: 5670081335
effective search space used: 5670081335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)