Query 038581
Match_columns 792
No_of_seqs 390 out of 2312
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:29:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 6E-165 1E-169 1461.3 68.4 742 32-787 27-778 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 2E-142 5E-147 1272.8 65.0 651 58-785 31-758 (765)
3 COG1472 BglX Beta-glucosidase- 100.0 1.1E-64 2.4E-69 560.3 26.3 312 88-451 55-372 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 7.5E-60 1.6E-64 509.4 21.3 265 73-375 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 2.3E-48 5E-53 422.6 21.7 243 92-379 54-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 1.2E-38 2.7E-43 331.4 12.9 215 413-645 1-227 (227)
7 PF14310 Fn3-like: Fibronectin 99.8 7.4E-21 1.6E-25 160.8 5.7 70 711-781 1-71 (71)
8 PF07705 CARDB: CARDB; InterP 96.4 0.0097 2.1E-07 53.0 6.9 62 692-777 18-81 (101)
9 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.12 2.5E-06 44.4 7.9 71 692-778 4-74 (78)
10 PF12690 BsuPI: Intracellular 94.4 0.2 4.4E-06 43.5 7.7 70 695-776 2-81 (82)
11 PF14874 PapD-like: Flagellar- 87.5 3.1 6.7E-05 37.2 8.3 62 692-760 19-80 (102)
12 COG0486 ThdF Predicted GTPase 87.0 19 0.0004 41.2 15.6 96 264-379 60-171 (454)
13 PRK13203 ureB urease subunit b 86.1 1.4 3E-05 39.4 4.9 52 695-750 20-82 (102)
14 PRK13202 ureB urease subunit b 85.8 1.3 2.8E-05 39.7 4.6 52 695-750 21-83 (104)
15 cd00407 Urease_beta Urease bet 83.9 1.9 4.1E-05 38.5 4.7 52 695-750 20-82 (101)
16 TIGR00192 urease_beta urease, 82.7 2.2 4.7E-05 38.1 4.6 52 695-750 20-82 (101)
17 PF13473 Cupredoxin_1: Cupredo 80.5 3.2 6.9E-05 37.5 5.2 40 696-752 44-83 (104)
18 PF00699 Urease_beta: Urease b 79.7 3.6 7.8E-05 36.7 4.9 53 694-750 18-81 (100)
19 PRK13201 ureB urease subunit b 79.3 3.3 7.2E-05 38.7 4.8 52 695-750 20-82 (136)
20 PRK13205 ureB urease subunit b 78.5 3.5 7.5E-05 39.4 4.7 52 695-750 20-82 (162)
21 PRK13204 ureB urease subunit b 78.2 3.6 7.8E-05 39.5 4.7 52 695-750 43-105 (159)
22 PRK13198 ureB urease subunit b 76.9 4.1 8.9E-05 39.0 4.7 52 695-750 48-110 (158)
23 COG0832 UreB Urea amidohydrola 75.1 4.5 9.8E-05 36.0 4.2 53 694-750 19-82 (106)
24 COG1470 Predicted membrane pro 74.1 11 0.00024 42.8 7.9 76 692-781 283-360 (513)
25 PRK13192 bifunctional urease s 71.2 6.4 0.00014 39.7 4.7 52 695-750 129-191 (208)
26 PF07385 DUF1498: Protein of u 68.6 5.8 0.00013 40.7 3.9 67 700-781 111-187 (225)
27 PRK13986 urease subunit alpha; 68.2 7.9 0.00017 39.5 4.7 52 695-750 125-187 (225)
28 PF06030 DUF916: Bacterial pro 67.2 24 0.00053 33.0 7.6 59 693-753 27-103 (121)
29 PF00345 PapD_N: Pili and flag 66.4 8.6 0.00019 35.6 4.5 55 696-753 17-73 (122)
30 COG1470 Predicted membrane pro 65.9 25 0.00055 40.0 8.5 71 692-779 396-467 (513)
31 PF06280 DUF1034: Fn3-like dom 61.8 27 0.00059 31.9 6.8 61 693-753 8-80 (112)
32 PF05506 DUF756: Domain of unk 61.0 23 0.00051 30.9 5.9 47 696-753 21-67 (89)
33 PF04744 Monooxygenase_B: Mono 60.9 18 0.00039 40.0 6.1 56 692-752 262-334 (381)
34 PF00927 Transglut_C: Transglu 59.5 13 0.00027 33.7 4.1 60 692-753 14-76 (107)
35 PF06165 Glyco_transf_36: Glyc 58.0 9.2 0.0002 35.1 2.9 58 634-718 31-88 (110)
36 PF14796 AP3B1_C: Clathrin-ada 55.5 28 0.0006 33.7 5.8 55 693-753 85-140 (145)
37 PF07610 DUF1573: Protein of u 53.8 27 0.00059 26.5 4.4 44 698-750 1-44 (45)
38 PF09624 DUF2393: Protein of u 52.5 37 0.00081 32.7 6.3 62 692-753 61-133 (149)
39 TIGR01759 MalateDH-SF1 malate 49.8 14 0.0003 40.8 3.1 58 492-553 75-134 (323)
40 PF07172 GRP: Glycine rich pro 49.5 13 0.00029 33.2 2.5 25 1-25 1-25 (95)
41 PRK09918 putative fimbrial cha 48.3 44 0.00095 34.9 6.5 52 696-752 41-93 (230)
42 PF01456 Mucin: Mucin-like gly 48.2 14 0.0003 35.4 2.6 23 5-27 3-25 (143)
43 TIGR02695 azurin azurin. Azuri 47.1 51 0.0011 31.0 5.9 54 696-753 26-99 (125)
44 TIGR03079 CH4_NH3mon_ox_B meth 45.8 47 0.001 36.7 6.2 57 692-753 281-354 (399)
45 PF14016 DUF4232: Protein of u 45.5 48 0.001 31.2 5.8 58 694-753 19-82 (131)
46 PRK00286 xseA exodeoxyribonucl 45.1 1.1E+02 0.0023 35.2 9.6 58 485-554 179-238 (438)
47 COG1160 Predicted GTPases [Gen 43.1 62 0.0013 37.0 6.9 47 488-547 75-121 (444)
48 PF11906 DUF3426: Protein of u 42.7 1.1E+02 0.0023 29.4 7.9 62 692-753 67-136 (149)
49 TIGR01756 LDH_protist lactate 42.7 17 0.00037 39.9 2.5 56 492-553 56-115 (313)
50 cd03708 GTPBP_III Domain III o 40.8 1.7E+02 0.0038 25.0 8.2 77 694-778 5-82 (87)
51 PLN02303 urease 38.8 38 0.00082 41.7 4.7 52 695-750 150-212 (837)
52 PF00056 Ldh_1_N: lactate/mala 38.0 8.3 0.00018 37.0 -0.8 54 493-553 66-123 (141)
53 cd00938 HisRS_RNA HisRS_RNA bi 37.4 60 0.0013 24.9 3.8 30 351-380 13-42 (45)
54 PRK05442 malate dehydrogenase; 36.1 31 0.00067 38.1 3.2 56 492-553 76-135 (326)
55 TIGR03096 nitroso_cyanin nitro 35.7 98 0.0021 29.6 6.0 16 738-753 95-110 (135)
56 TIGR01451 B_ant_repeat conserv 35.5 48 0.001 26.1 3.4 20 692-711 11-30 (53)
57 cd01338 MDH_choloroplast_like 34.9 31 0.00067 38.0 3.0 56 492-553 74-133 (322)
58 PLN00135 malate dehydrogenase 33.9 33 0.00072 37.5 3.0 57 492-553 54-113 (309)
59 PF01345 DUF11: Domain of unkn 33.5 47 0.001 27.8 3.3 20 692-711 40-59 (76)
60 TIGR00237 xseA exodeoxyribonuc 33.4 2.2E+02 0.0048 32.7 9.7 57 486-554 174-233 (432)
61 COG0039 Mdh Malate/lactate deh 32.9 35 0.00076 37.4 2.9 58 492-554 65-124 (313)
62 PRK13533 7-cyano-7-deazaguanin 32.4 45 0.00098 38.9 3.9 47 296-344 75-121 (487)
63 PF06205 GT36_AF: Glycosyltran 31.8 32 0.00069 30.4 2.0 18 736-753 67-84 (90)
64 PF00703 Glyco_hydro_2: Glycos 31.4 1.8E+02 0.0039 25.4 7.0 64 694-763 19-82 (110)
65 cd00300 LDH_like L-lactate deh 31.1 33 0.00071 37.3 2.4 57 492-553 62-120 (300)
66 PF11471 Sugarporin_N: Maltopo 31.0 98 0.0021 25.3 4.5 22 59-80 28-49 (60)
67 cd00704 MDH Malate dehydrogena 29.9 43 0.00094 36.9 3.1 58 492-553 72-131 (323)
68 PF07233 DUF1425: Protein of u 29.8 3E+02 0.0066 24.3 8.0 60 692-753 23-82 (94)
69 TIGR01772 MDH_euk_gproteo mala 29.6 52 0.0011 36.1 3.6 56 492-553 63-121 (312)
70 TIGR01334 modD putative molybd 28.8 4E+02 0.0086 28.8 10.0 31 191-231 105-135 (277)
71 PRK15188 fimbrial chaperone pr 28.3 1.2E+02 0.0027 31.6 5.9 51 696-753 44-98 (228)
72 PRK15299 fimbrial chaperone pr 28.1 1.1E+02 0.0024 31.9 5.6 55 696-752 39-94 (227)
73 TIGR03352 VI_chp_3 type VI sec 27.3 91 0.002 30.2 4.4 25 729-753 80-104 (146)
74 TIGR01758 MDH_euk_cyt malate d 27.3 48 0.001 36.6 2.9 56 492-553 71-130 (324)
75 cd01857 HSR1_MMR1 HSR1/MMR1. 27.0 1.5E+02 0.0032 28.0 5.9 18 488-505 3-20 (141)
76 COG1361 S-layer domain [Cell e 26.8 1.4E+02 0.0031 34.8 6.9 58 694-753 168-226 (500)
77 cd01336 MDH_cytoplasmic_cytoso 26.4 53 0.0011 36.2 3.0 58 492-553 74-133 (325)
78 TIGR01757 Malate-DH_plant mala 26.1 40 0.00086 38.1 2.0 56 492-553 116-175 (387)
79 PLN00112 malate dehydrogenase 26.1 42 0.0009 38.7 2.1 56 492-554 172-232 (444)
80 PRK05086 malate dehydrogenase; 25.6 52 0.0011 36.0 2.8 56 492-553 65-123 (312)
81 PF10087 DUF2325: Uncharacteri 25.5 1.8E+02 0.0038 25.7 5.7 39 490-543 42-80 (97)
82 cd05294 LDH-like_MDH_nadp A la 25.1 64 0.0014 35.3 3.3 56 493-553 69-126 (309)
83 TIGR00450 mnmE_trmE_thdF tRNA 25.0 1.1E+03 0.024 27.2 15.4 36 264-300 50-90 (442)
84 cd09030 DUF1425 Putative perip 25.0 4.6E+02 0.0099 23.4 8.4 59 693-753 32-90 (101)
85 PF06858 NOG1: Nucleolar GTP-b 24.9 1.9E+02 0.0041 23.5 5.0 24 523-546 31-55 (58)
86 cd01337 MDH_glyoxysomal_mitoch 24.3 57 0.0012 35.8 2.7 55 492-553 64-122 (310)
87 TIGR01763 MalateDH_bact malate 24.0 55 0.0012 35.7 2.6 53 494-553 67-123 (305)
88 PF11611 DUF4352: Domain of un 23.8 91 0.002 28.4 3.7 62 692-753 35-101 (123)
89 PLN02602 lactate dehydrogenase 23.5 52 0.0011 36.7 2.3 57 492-553 101-159 (350)
90 PF02601 Exonuc_VII_L: Exonucl 23.2 3E+02 0.0065 30.0 8.2 58 485-554 58-121 (319)
91 PRK15249 fimbrial chaperone pr 23.0 1.3E+02 0.0029 31.8 5.2 54 696-752 45-103 (253)
92 PRK15211 fimbrial chaperone pr 23.0 1.5E+02 0.0033 30.9 5.5 51 696-753 39-93 (229)
93 TIGR01771 L-LDH-NAD L-lactate 22.7 51 0.0011 35.9 2.0 55 492-553 60-118 (299)
94 PF05753 TRAP_beta: Translocon 22.1 3.4E+02 0.0074 27.3 7.6 66 692-763 37-106 (181)
95 COG2003 RadC DNA repair protei 22.0 54 0.0012 34.0 1.8 51 261-312 158-209 (224)
96 PF00553 CBM_2: Cellulose bind 21.6 1E+02 0.0022 27.6 3.4 18 691-708 11-28 (101)
97 PF09851 SHOCT: Short C-termin 21.5 1.4E+02 0.0031 20.8 3.3 25 349-373 6-30 (31)
98 PRK00066 ldh L-lactate dehydro 21.2 71 0.0015 35.1 2.7 55 492-553 69-127 (315)
99 PRK13556 azoreductase; Provisi 21.2 2.1E+02 0.0046 29.0 6.1 38 487-535 80-117 (208)
100 PF08626 TRAPPC9-Trs120: Trans 20.7 4.5E+02 0.0098 34.5 10.2 62 691-753 797-879 (1185)
101 PRK13555 azoreductase; Provisi 20.6 2E+02 0.0043 29.5 5.7 38 487-535 80-117 (208)
102 TIGR02231 conserved hypothetic 20.3 1.9E+02 0.0042 34.0 6.3 58 694-753 443-516 (525)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=6e-165 Score=1461.34 Aligned_cols=742 Identities=47% Similarity=0.908 Sum_probs=641.5
Q ss_pred CCcccCCCCcccccCCCcccCcccCCCCChhHHHHHHHhcCCHHHHHhhhcCcccCCCCCCCCchhhhhhhcccccccCC
Q 038581 32 SPVFVCDPGRFSKLGLQMSSFLFCDSSLPYSIRVKDLVSRMTLDEKVQQLGDFAHGVPRLGLPQYEWWSEALHGVSNVGP 111 (792)
Q Consensus 32 ~~~~~~~~~~f~~~~~~~~~~~~~d~~~~~~~r~~~ll~~MTleEKv~ql~~~~~~~~rlgip~~~~~~~~~~g~~~~g~ 111 (792)
.++.+|++. +....||||+++++++|+++||++||||||++||.+...+++|||||.+.||+|++||++..++
T Consensus 27 ~~~~~c~~~-------~~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~~~~vpRlGIP~~~~~~d~~hGv~~~~~ 99 (779)
T PLN03080 27 HPQFPCKPP-------TFSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNTAAGVPRLGIPPYEWWSESLHGLADNGP 99 (779)
T ss_pred CCCcCCCCc-------cccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCCCCCCCcCCCCccceecccccccccCCC
Confidence 467778763 4566899999999999999999999999999999988889999999999999999999988888
Q ss_pred ccccC-CCCCCcccCchHhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCcceeeccccccCCCCCCCcccCCCCCChHH
Q 038581 112 GTHFD-DVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTYWSPNINVARDPRWGRITETPGEDPFV 190 (792)
Q Consensus 112 g~~~~-~~~~~~t~fP~~~~l~At~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~~aP~~dv~r~p~~gr~~e~fgeDP~l 190 (792)
|+++. +.+.++|.||++|++|||||++|++++|+++|+|+|+++|.|..|+++|+|++||.|||+|||++|||||||+|
T Consensus 100 g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~~~aP~vdi~rdPrwGR~~EtfGEDP~l 179 (779)
T PLN03080 100 GVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLTFWAPNINIFRDPRWGRGQETPGEDPAV 179 (779)
T ss_pred ccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcceeecccccccCCCcCccccCcCCCHHH
Confidence 88774 33457899999999999999999999999999999999766555778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcCCCCcccCCCCCCeeeEeecccccCCCCCCCCCcceeecccCCHHHHHHhcchhhHHhHhcCCc
Q 038581 191 VGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDA 270 (792)
Q Consensus 191 v~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~V~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l~PF~~ai~~g~~ 270 (792)
+++|+.|||+|||+.+.....++.+.++.+|+||+||||||+++.+.++.|..+++.+++++|+|+||+||+++|++|.+
T Consensus 180 v~~~a~a~V~GlQ~~~~~~~~~~~~~~~~~V~a~~KHF~g~~~e~~~~~~r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~ 259 (779)
T PLN03080 180 ASAYSVEFVKGFQGGKWKKVRDDGEDGKLMLSACCKHYTAYDLEKWGNFSRYTFNAVVTEQDMEDTYQPPFKSCIQEGKA 259 (779)
T ss_pred HHHHHHHHHHHhcCCCcccccccccCCCceEEEECCeeeCCCccccCCccccCccCccCHHHHHhhhhHHHHHHHHhcCC
Confidence 99999999999998410000000011345699999999999998777778888888999999999999999999999988
Q ss_pred ceeeeeccccCCcccccCHHHHHHhhhcccCCceEEEccchhhHHhhhccccccCCHHHHHHHHHHcCcCccCCccchhh
Q 038581 271 SSVMCSYNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDCGQYYTNF 350 (792)
Q Consensus 271 ~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~~~~ 350 (792)
++||||||++||+|+|.|++||++ ||+||||+|+|||||++|..+.. .|++..+.+|++++||+||+||+|..++.+.
T Consensus 260 ~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~-~~~~~~~~~ea~~~Al~AG~Dl~~~~~~~~~ 337 (779)
T PLN03080 260 SCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFE-YQTYTKSPEDAVADVLKAGMDINCGSYMLRH 337 (779)
T ss_pred eEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhh-cccccCCHHHHHHHHHHcCCCcccCchhHHH
Confidence 899999999999999999999986 99999999999999999999987 6777778999999999999999998877789
Q ss_pred HHHHHhcCCCCHHHHHhHHHHHHHHHHHhcCCCCCC---cccCCCcccCCCHHHHHHHHHHHHhhhhhcccCCCCCCCCC
Q 038581 351 TGNAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSP---QYVSLGKQDICSDENIELAAEAAREGIVLLKNDQNTLPLNS 427 (792)
Q Consensus 351 l~~av~~G~i~~~~ld~av~RiL~~k~~~Glf~~~p---~~~~~~~~~v~~~~~~~la~~~A~esiVLLKN~~~~LPL~~ 427 (792)
|.+||++|+|++++||+||+|||++|+++|+|+.++ +|.++....+.+++|+++|+++|+||||||||++++|||++
T Consensus 338 l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~ 417 (779)
T PLN03080 338 TQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNK 417 (779)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCC
Confidence 999999999999999999999999999999999432 23444456788999999999999999999999999999987
Q ss_pred CCCceEEEEccCccchhhhcCcccCCCCccCChhhhhcccc-eEEEeeccCCcccCCcchHHHHHHHhhcCCEEEEEEec
Q 038581 428 AKVKTVAVVGPHANATVAMIGNYAGIPCRYMSPIAGFSGYA-NVTYKTGCDDVACKSNNSIFAASEAAKTADATIILAGL 506 (792)
Q Consensus 428 ~~~~kIaviG~~a~~~~~~~G~~~g~~~~~~t~~~gl~~~~-~~~y~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~vG~ 506 (792)
.+.+||+||||+|+....++|+|++.+++.+|++++|+++. .+.|..||....+.+...+++|+++|++||++||++|.
T Consensus 418 ~~~~~IaViGp~A~~~~~~~g~~~~~~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~ 497 (779)
T PLN03080 418 SEVSSLAIIGPMANDPYNLGGDYTGVPCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGL 497 (779)
T ss_pred CCCCEEEEECCCCCCcCcCCCCCCCCCCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCC
Confidence 65679999999999988888889998889999999999875 57899998765555566789999999999999999999
Q ss_pred CCCcccccCCCCCCCCChhhHHHHHHHHHhcCCCEEEEEeCCceeecccccccCCccEEEEccCCCchhHHHHHHHHhCC
Q 038581 507 DLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIAFAETNTNIKAILWAGYPGEEGGRAIADVVFGK 586 (792)
Q Consensus 507 ~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~pG~e~g~AlAdVL~G~ 586 (792)
+...++|+.||.+|.||+.|.+||++|++++++|||||+++|+|++|+|+.++++++|||++|||||++|+|+||||||+
T Consensus 498 ~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~ 577 (779)
T PLN03080 498 DLSQETEDHDRVSLLLPGKQMDLISSVASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGD 577 (779)
T ss_pred CccccccCCCcccccCCccHHHHHHHHHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCC
Confidence 98899999999999999999999999998777899999999999999998766789999999999999999999999999
Q ss_pred CCCCCCCCeecccCCccCCCCCcCCCCCCCCCCCCCCccccccCCCCcccccCCCCCCceeeeccccccceeccccc--c
Q 038581 587 FNPGGRLPITWYNGDYVQMLPLTSMPLRPVDSLGYPGRTYKFYNGPTLYPFGYGLSYTQFKYNLLSFTKTIQVNLNK--L 664 (792)
Q Consensus 587 ~nPsGkLPvT~~~~~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~~ypFG~GLSYTtF~ys~l~~~~~~~~~~~~--~ 664 (792)
+|||||||+||||+++ .++|++++++++++..+|+|++||||+.+|+||||||||||||+|++++++..++++... .
T Consensus 578 vnPsGkLPvT~~p~~~-~~~P~~~~~~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~ 656 (779)
T PLN03080 578 YNPGGRLPMTWYPESF-TAVPMTDMNMRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQD 656 (779)
T ss_pred CCCCCcCeeeeccccc-ccCCccccCcccccccCCCCCCceeCCCCcceeccCCCccceeEecccccccccccccccccc
Confidence 9999999999988887 579998888887767789999999999999999999999999999998754321121100 0
Q ss_pred -cccccccccCCCccCCCCcccccC-CCCCc-eEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCC
Q 038581 665 -QHCRNLNYTSDASKTRCPGVLVND-LRCDD-YFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRA 741 (792)
Q Consensus 665 -~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~p 741 (792)
..+.. ....+ . ......... ..|+. .++|+|+|||||+++|+||||||+++|.++..+|.|||+||+||+|+|
T Consensus 657 ~~~~~~-~~~~~--~-~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~ 732 (779)
T PLN03080 657 SISRKP-LLQRR--D-ELDYVQIEDIASCESLRFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTAS 732 (779)
T ss_pred cccccc-ccccc--c-ccccccccccccCCCceEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCC
Confidence 00000 00000 0 000000000 11232 699999999999999999999999999888889999999999999999
Q ss_pred CCEEEEEEEeccCCCeeEEeCCCCEEEeCeEEEEEEeCCceeEEEE
Q 038581 742 GRNKRIKFVFNACKSLNIVDYAANTLLPAGEHTIFVGNGGVSFPIH 787 (792)
Q Consensus 742 Ges~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~ss~~~~~~ 787 (792)
||+++|+|+|+++++|++||++++|++|+|+|+|+||.+++++.++
T Consensus 733 Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~l~vG~~~~~~~~~ 778 (779)
T PLN03080 733 GRSTETEIVVDPCKHLSVANEEGKRVLPLGDHVLMLGDLEHSLSIE 778 (779)
T ss_pred CCEEEEEEEeCchHHceEEcCCCcEEEeCccEEEEEeCCccceEEe
Confidence 9999999999975789999999999999999999999999665554
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=2.4e-142 Score=1272.81 Aligned_cols=651 Identities=29% Similarity=0.515 Sum_probs=555.7
Q ss_pred CCChhHHHHHHHhcCCHHHHHhhhcCccc--------------------------------------CCCCCCCCchhhh
Q 038581 58 SLPYSIRVKDLVSRMTLDEKVQQLGDFAH--------------------------------------GVPRLGLPQYEWW 99 (792)
Q Consensus 58 ~~~~~~r~~~ll~~MTleEKv~ql~~~~~--------------------------------------~~~rlgip~~~~~ 99 (792)
+.+.++|++++|++||+|||+|||++... ..+|+|||.+ +.
T Consensus 31 ~~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n~~~~~~~~~lq~~~~~~~~~giP~l-i~ 109 (765)
T PRK15098 31 PEARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFNTVTRQDIRAMQDQVMQLSRLKIPLF-FA 109 (765)
T ss_pred CcCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEcCcCHHHHHHHHHHHhhCCCCCCCee-EE
Confidence 34788999999999999999999986310 0256788887 45
Q ss_pred hhhcccccccCCccccCCCCCCcccCchHhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCccee-eccccccCCCCCCC
Q 038581 100 SEALHGVSNVGPGTHFDDVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTY-WSPNINVARDPRWG 178 (792)
Q Consensus 100 ~~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~l~At~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~-~aP~~dv~r~p~~g 178 (792)
.|+.||. .|.||++++||||||++|++++|+++|+|+|++ |+|+ |||++||.|||+||
T Consensus 110 ~D~e~G~---------------~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~------Gin~~laPv~Dv~r~p~~g 168 (765)
T PRK15098 110 YDVVHGQ---------------RTVFPISLGLASSWDLDAVATVGRVSAYEAADD------GLNMTWAPMVDISRDPRWG 168 (765)
T ss_pred EeCCCCc---------------cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCCEEeeCcccccCCCCcc
Confidence 5666653 588999999999999999999999999999999 9998 99999999999999
Q ss_pred cccCCCCCChHHHHHHHHHHHHHhccCcCCCCcccCCCCCCeeeEeecccccCCCCCCCCCcceeecccCCHHHHHHhcc
Q 038581 179 RITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVDRYHFDARVTEQDMEETFL 258 (792)
Q Consensus 179 r~~e~fgeDP~lv~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~V~a~~KHFpg~g~~~~~~~~~~~~~~~~~~~~l~e~~l 258 (792)
|++|||||||+++++|+.|+|+|||+.+. ....+|++|+|||||||.... +|...++.+++++|+|+||
T Consensus 169 r~~rsfgeDP~lv~~~~~a~v~GlQ~~~~--------~~~~gV~a~~KHFpG~g~~~~---~~~~~~~~~~~~~l~e~~l 237 (765)
T PRK15098 169 RASEGFGEDTYLTSIMGKTMVKAMQGKSP--------ADRYSVMTSVKHFALYGAVEG---GRDYNTVDMSPQRMFNDYL 237 (765)
T ss_pred ccccCcCCCHHHHHHHHHHHHHHHcCCCC--------CCCCCEEEECcEEeCCCCccc---CccCccCcCCHHHHHHHHH
Confidence 99999999999999999999999998521 012249999999999995321 2333456789999999999
Q ss_pred hhhHHhHhcCCcceeeeeccccCCcccccCHHHHHHhhhcccCCceEEEccchhhHHhhhccccccCCHHHHHHHHHHcC
Q 038581 259 RPFEMCVKEGDASSVMCSYNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAG 338 (792)
Q Consensus 259 ~PF~~ai~~g~~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG 338 (792)
+||+++|++| +.+||||||.+||+|+|+|+++|+++||+||||+|+|||||++|..+.. |++..+.+|++++||+||
T Consensus 238 ~PF~~ai~ag-~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~--~~~~~~~~ea~~~Al~AG 314 (765)
T PRK15098 238 PPYKAGLDAG-SGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIK--HGVAADPEDAVRLALKSG 314 (765)
T ss_pred HHHHHHHHhC-CCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHh--cccCCCHHHHHHHHHHcC
Confidence 9999999988 5599999999999999999999999999999999999999999998874 566678899999999999
Q ss_pred cCccCCcc-chhhHHHHHhcCCCCHHHHHhHHHHHHHHHHHhcCCCCCCcccCCC-------cccCCCHHHHHHHHHHHH
Q 038581 339 LDLDCGQY-YTNFTGNAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSPQYVSLG-------KQDICSDENIELAAEAAR 410 (792)
Q Consensus 339 ~D~~~~~~-~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Glf~~~p~~~~~~-------~~~v~~~~~~~la~~~A~ 410 (792)
+||+|... +.+.|.+||++|+|++++||+||+|||++|+++|+|+ + ||.+.. ...+.+++|+++|+++|+
T Consensus 315 ~Dl~m~~~~~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~-~-p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 392 (765)
T PRK15098 315 IDMSMSDEYYSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFN-D-PYSHLGPKESDPVDTNAESRLHRKEAREVAR 392 (765)
T ss_pred CCcccCchhHHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCC-C-CccccccccccccccccCCHHHHHHHHHHHH
Confidence 99998754 3457999999999999999999999999999999998 4 353321 122456899999999999
Q ss_pred hhhhhcccCCCCCCCCCCCCceEEEEccCccchhhhcCccc--CCCCccCChhhhhcccc----eEEEeeccCCccc---
Q 038581 411 EGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYA--GIPCRYMSPIAGFSGYA----NVTYKTGCDDVAC--- 481 (792)
Q Consensus 411 esiVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~--g~~~~~~t~~~gl~~~~----~~~y~~g~~~~~~--- 481 (792)
+|||||||++++|||++. +||+||||+++....+.|+|+ +.+.+.+|+++||++.. .+.|..||.....
T Consensus 393 ~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~ 470 (765)
T PRK15098 393 ESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSWSAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGI 470 (765)
T ss_pred hcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCccccCccCCCCCHHHHHHHhhcCCceEEEecccccccCccc
Confidence 999999999999999853 599999999988776677774 56778899999999864 5889888842111
Q ss_pred ----------------CCcchHHHHHHHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHHhcCCCEEEEE
Q 038581 482 ----------------KSNNSIFAASEAAKTADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVI 545 (792)
Q Consensus 482 ----------------~~~~~~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl 545 (792)
..+..+++|+++|++||++||++|.+...++|+.||.+|.||+.|.+||+++++. ++|||||+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~-~~~vVvVl 549 (765)
T PRK15098 471 IDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKAT-GKPLVLVL 549 (765)
T ss_pred chhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHh-CcCEEEEE
Confidence 1134678899999999999999999888899999999999999999999999875 57899999
Q ss_pred eCCceeecccccccCCccEEEEccCCCchhHHHHHHHHhCCCCCCCCCCeecccCCccCCCCCcCCCCC---CCCCCCCC
Q 038581 546 MSAGGVDIAFAETNTNIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITWYNGDYVQMLPLTSMPLR---PVDSLGYP 622 (792)
Q Consensus 546 ~~g~P~~l~~~~~~~~v~Ail~a~~pG~e~g~AlAdVL~G~~nPsGkLPvT~~~~~~~~~~p~~~~~~~---~~~~~~~~ 622 (792)
++|+|++|+|+. ++++|||++||||+++|+|+||||||++|||||||+|| |++. +|+|.++.... ++.+..+.
T Consensus 550 ~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~ 625 (765)
T PRK15098 550 MNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPN 625 (765)
T ss_pred eCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccce-eCCC-CcCccccccCCCCCccccCccc
Confidence 999999999874 48999999999999999999999999999999999998 5554 66887543221 11111122
Q ss_pred CccccccCC--CCcccccCCCCCCceeeeccccccceecccccccccccccccCCCccCCCCcccccCCCCCceEEEEEE
Q 038581 623 GRTYKFYNG--PTLYPFGYGLSYTQFKYNLLSFTKTIQVNLNKLQHCRNLNYTSDASKTRCPGVLVNDLRCDDYFEFKVD 700 (792)
Q Consensus 623 g~~Yr~~~~--~~~ypFG~GLSYTtF~ys~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 700 (792)
+.+||||+. +|+||||||||||+|+|+++++.+ .. . ..++.++|+|+
T Consensus 626 ~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~------~~---~----------------------~~~~~i~v~v~ 674 (765)
T PRK15098 626 KYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSS------PT---M----------------------KRDGKVTASVT 674 (765)
T ss_pred ccccceeccCCCccccccCCCCCccEEeeccEecc------cc---c----------------------cCCCeEEEEEE
Confidence 235899986 489999999999999999988321 00 0 01357999999
Q ss_pred EEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEeCeEEEEEEeCC
Q 038581 701 FQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAANTLLPAGEHTIFVGNG 780 (792)
Q Consensus 701 VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~y~i~vG~s 780 (792)
|||||+++|+||||||+++|.+++.+|.|||+||+||+|+|||+++|+|+|++ ++|++||.+++|++|+|+|+|+||+|
T Consensus 675 V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~s 753 (765)
T PRK15098 675 VTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGETQTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLD 753 (765)
T ss_pred EEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCeEEEEEeecH-HHhceECCCCcEEEeCceEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999998 79999999999999999999999999
Q ss_pred ceeEE
Q 038581 781 GVSFP 785 (792)
Q Consensus 781 s~~~~ 785 (792)
|.+++
T Consensus 754 s~d~~ 758 (765)
T PRK15098 754 SARVK 758 (765)
T ss_pred CCccc
Confidence 97664
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-64 Score=560.31 Aligned_cols=312 Identities=33% Similarity=0.577 Sum_probs=265.7
Q ss_pred CCCCCCCchhhhhhhcccccccCCccccCCCCCCcccCchHhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCccee-ec
Q 038581 88 VPRLGLPQYEWWSEALHGVSNVGPGTHFDDVIPGATSFPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTY-WS 166 (792)
Q Consensus 88 ~~rlgip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~l~At~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~-~a 166 (792)
.+|++||.+ +..|..+|. .++...++|.||+++++||+||+++++++|+++|+|+|++ |+|+ ||
T Consensus 55 ~~r~~ipll-i~~D~egG~--------v~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~------Gin~~fA 119 (397)
T COG1472 55 EARLGIPLL-IAIDQEGGR--------VQRLREGFTVFPAALALAATWDPELARKVGRVIAKELRAL------GINLDFA 119 (397)
T ss_pred hhccCCCeE-EEEecCCCe--------eeeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHc------CCCcccc
Confidence 357889988 355555554 2222225899999999999999999999999999999999 9998 99
Q ss_pred cccccCCCCCCCcccCC-CCCChHHHHHHHHHHHHHhccCcCCCCcccCCCCCCeeeEeecccccCCCCCCCCCcceeec
Q 038581 167 PNINVARDPRWGRITET-PGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVDRYHFD 245 (792)
Q Consensus 167 P~~dv~r~p~~gr~~e~-fgeDP~lv~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~V~a~~KHFpg~g~~~~~~~~~~~~~ 245 (792)
||+||.|||+|||..|+ |||||++++.|+.||++|||+. | |++|+|||||||..+. +++..+
T Consensus 120 PvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~i~Glq~~-g-------------v~at~KHFpGhG~~~~---dsh~~~ 182 (397)
T COG1472 120 PVLDVARDPRWGRIGERSFGEDPELVALLAAAFIKGLQGA-G-------------VAATIKHFPGHGAVEG---DSHYGL 182 (397)
T ss_pred ceeecccCCCcCccccccCCCCHHHHHHHHHHHHHHHhhC-C-------------ceeeeccccCCCCCcC---Cccccc
Confidence 99999999999998877 9999999999999999999997 7 9999999999985432 222222
Q ss_pred ccCCHHHHHHhcchhhHHhHhcCC--cceeeeeccccCCcccccCHHHHHHhhhcccCCceEEEccchhhHHhhhccccc
Q 038581 246 ARVTEQDMEETFLRPFEMCVKEGD--ASSVMCSYNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFL 323 (792)
Q Consensus 246 ~~~~~~~l~e~~l~PF~~ai~~g~--~~~vM~sy~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~ 323 (792)
..++++.|+|+|++||+.+++.+. +.++|++||.+||.|||.|+++|++|||++|||+|+|||||++|+++.. .
T Consensus 183 ~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~-~--- 258 (397)
T COG1472 183 LPIDPRALRELYLPPFQPAIALGDDAAMTAHVAYPKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAA-A--- 258 (397)
T ss_pred CCCChHHHHHhhccchHHHHHhccccceEEeeeccCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHH-h---
Confidence 568999999999999999999996 6799999999999999999999999999999999999999999999776 2
Q ss_pred cCCHHHHHHHHHHcCcCccCCcc-ch-hhHHHHHhcCCCCHHHHHhHHHHHHHHHHHhcCCCCCCcccCCCcccCCCHHH
Q 038581 324 ADSKEDAVAQTLKAGLDLDCGQY-YT-NFTGNAVQQGKVKETDIDKSLKYLYTVLMRLGFFDGSPQYVSLGKQDICSDEN 401 (792)
Q Consensus 324 ~~~~~ea~~~al~AG~D~~~~~~-~~-~~l~~av~~G~i~~~~ld~av~RiL~~k~~~Glf~~~p~~~~~~~~~v~~~~~ 401 (792)
..+..+++..|++||+||+|... .. ..+..+...+ ++++++|++++|||++|+++|+|+ +| |.. +|
T Consensus 259 ~g~~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~~-~~~~~i~~~v~Ril~~k~~~~~f~-~~-~~~---------~~ 326 (397)
T COG1472 259 HGSAADRAEAALKAGVDIVLVCNELYEAYLVVLELVG-LSEARLDDAVRRILRVKFKLGLFE-NP-YSS---------EH 326 (397)
T ss_pred ccCHHHHHHHHHhcCCCEEecCCchhHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHhcccc-CC-Cch---------hh
Confidence 24677888889999999998532 22 3333344444 999999999999999999999999 43 332 89
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCCCCCCCceEEEEccCccchhhhcCccc
Q 038581 402 IELAAEAAREGIVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYA 451 (792)
Q Consensus 402 ~~la~~~A~esiVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~ 451 (792)
++++++++++|+|||||+..+|||+ .+.++|+++||+++.. . |+|+
T Consensus 327 ~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 327 RALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 9999999999999999998999999 4467999999999987 5 6665
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=7.5e-60 Score=509.36 Aligned_cols=265 Identities=30% Similarity=0.515 Sum_probs=213.6
Q ss_pred CHHHHHhhhcCc----------------------------ccCCCCCCCCchhhhhhhcccccccCCccccCCCCCCccc
Q 038581 73 TLDEKVQQLGDF----------------------------AHGVPRLGLPQYEWWSEALHGVSNVGPGTHFDDVIPGATS 124 (792)
Q Consensus 73 TleEKv~ql~~~----------------------------~~~~~rlgip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~ 124 (792)
|||||||||++. ....+++|||.+ +..|..+|+... . ..+.|.
T Consensus 1 TleeKigQl~~~~~~~i~~~~vGgv~~~~~~~~~~~~~~~~~~~~~~~iP~~-i~~D~egG~~~~-----~---~~~~t~ 71 (299)
T PF00933_consen 1 TLEEKIGQLFMELKELIKEYHVGGVILPEQLKQLTQSLQAISEQSRLGIPLL-IAIDQEGGIVQR-----L---GGGFTA 71 (299)
T ss_dssp -HHHHHHHTEEHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHCCGCGTCT-E-EEEEETTSTTTS-----T---TTTS--
T ss_pred CHHHHHHHHHHHHHHHHhcCCccEEEcHHHHHHHHHHHHHHhhccccCCCeE-EEEcCCCceEec-----C---CCcCcc
Confidence 899999999931 123578999998 467777776421 1 112699
Q ss_pred CchHhHhhhcCCHHHHHHHHHHHHHHHHHhhccCCCccee-eccccccCCCCCCCcccCCCCCChHHHHHHHHHHHHHhc
Q 038581 125 FPTVILTTASFNESLWKKIGQAVSTEARAMYNLGRAGLTY-WSPNINVARDPRWGRITETPGEDPFVVGRYAVNYVRGLQ 203 (792)
Q Consensus 125 fP~~~~l~At~d~~l~~~~g~~~g~E~~a~~~~g~~Gi~~-~aP~~dv~r~p~~gr~~e~fgeDP~lv~~~a~a~v~G~Q 203 (792)
||+++++|||||+++++++|+.+|+|++++ |+|+ |||++||.|+|+|||+.|+|||||+++++|+.|||+|+|
T Consensus 72 ~P~~~~l~at~d~~~a~~~g~~~a~el~~~------Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~q 145 (299)
T PF00933_consen 72 FPSPMALAATWDPELAYEVGRIIARELRAL------GINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGLQ 145 (299)
T ss_dssp -S-HHHHHHHTCHHHHHHHHHHHHHHHHHT------T-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHHHh------hhccccccceeeeeeccccccccccchhHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999 9998 999999999999999999999999999999999999999
Q ss_pred cCcCCCCcccCCCCCCeeeEeecccccC-CCCCCCCCcceeecccCCHHHHHHhcchhhHHhHhcCCcceeeeeccccCC
Q 038581 204 DVEGHENATDLNSRPLKVSSCCKHYAAY-DVDNWKGVDRYHFDARVTEQDMEETFLRPFEMCVKEGDASSVMCSYNRVNG 282 (792)
Q Consensus 204 ~~~g~~~~~~~~~~~~~V~a~~KHFpg~-g~~~~~~~~~~~~~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~sy~~vng 282 (792)
+. | |++|+|||||| ..|+|.+.+ ...+++++|+|.||+||+.+|+++.+.+||+||+.+|+
T Consensus 146 ~~-g-------------v~~~~KHFpG~~~~d~~~~~~----~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~ 207 (299)
T PF00933_consen 146 GA-G-------------VAATAKHFPGHGAQDSHRDLP----SVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDG 207 (299)
T ss_dssp CT-T-------------SEEEEEEETTGGCSCTTTTTE----EEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTT
T ss_pred cc-c-------------ccccccccccccccccccccc----eecCCcccccchhcccchhcccccccceeeeeccccCC
Confidence 98 7 99999999997 355555443 34579999999999999999944446699999999999
Q ss_pred cccccCHHHHHHhhhcccCCceEEEccchhhHHhhhccccccCCHHHHHHHHHHcCcCccCCccc----hhhHHHHHhcC
Q 038581 283 IPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDCGQYY----TNFTGNAVQQG 358 (792)
Q Consensus 283 ~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~~~~----~~~l~~av~~G 358 (792)
+|+|+|+++|+++||+||||+|+|||||++|+++.. ..+..+++++|++||+||+|.... .+.|.++|++|
T Consensus 208 ~pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~-----~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g 282 (299)
T PF00933_consen 208 TPASLSPKILTDLLRNELGFDGVVISDDLEMGALSS-----NYSIEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESG 282 (299)
T ss_dssp EEGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHC-----CTTHHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTT
T ss_pred ccchhhhccchhhCcCcccCCCeEecccchHHHHHh-----ccccchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999987 445899999999999999987432 48899999999
Q ss_pred CCCHHHHHhHHHHHHHH
Q 038581 359 KVKETDIDKSLKYLYTV 375 (792)
Q Consensus 359 ~i~~~~ld~av~RiL~~ 375 (792)
.++++|||+||+|||++
T Consensus 283 ~i~~~~ld~av~RIl~~ 299 (299)
T PF00933_consen 283 RISEERLDEAVRRILRL 299 (299)
T ss_dssp SSGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 99999999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=2.3e-48 Score=422.64 Aligned_cols=243 Identities=19% Similarity=0.199 Sum_probs=200.9
Q ss_pred CCCchhhhhhhcccccccCCccccCCCCCCcccCchHhHhhhcCC------HHHHHHHHHHHHHHHHHhhccCCCccee-
Q 038581 92 GLPQYEWWSEALHGVSNVGPGTHFDDVIPGATSFPTVILTTASFN------ESLWKKIGQAVSTEARAMYNLGRAGLTY- 164 (792)
Q Consensus 92 gip~~~~~~~~~~g~~~~g~g~~~~~~~~~~t~fP~~~~l~At~d------~~l~~~~g~~~g~E~~a~~~~g~~Gi~~- 164 (792)
++|++ +..|..+| ++.+...+.|.||+++++||||| ++|++++|+++|+|+|++ |||+
T Consensus 54 ~~pll-i~iD~EgG--------~v~rl~~~~t~~P~~~~laat~d~~~~~~~~la~~~g~~~a~Elra~------Gin~~ 118 (337)
T PRK05337 54 RPPLL-IAVDQEGG--------RVQRFREGFTRLPAMQSFGALWDRDPLEALKLAEEAGWLMAAELRAC------GIDLS 118 (337)
T ss_pred CCCCE-EEEecCCC--------EeeecCCCCCCCCCHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHh------CCCcc
Confidence 57877 45555544 33333346899999999999999 999999999999999999 8998
Q ss_pred eccccccCCCCCCCcccCCCCCChHHHHHHHHHHHHHhccCcCCCCcccCCCCCCeeeEeecccccCCCCCCCCCcceee
Q 038581 165 WSPNINVARDPRWGRITETPGEDPFVVGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAYDVDNWKGVDRYHF 244 (792)
Q Consensus 165 ~aP~~dv~r~p~~gr~~e~fgeDP~lv~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~V~a~~KHFpg~g~~~~~~~~~~~~ 244 (792)
|+|++||.++++| |+.|+|||||+++++|+.||++|||+. | |++|+|||||||.+..+.+....
T Consensus 119 ~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq~~-g-------------v~~~~KHFpG~G~~~~dsh~~~~- 182 (337)
T PRK05337 119 FAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMHAA-G-------------MAATGKHFPGHGAVEADSHVETP- 182 (337)
T ss_pred ccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHHHC-C-------------CEEEecccCCCCCCcCCCCCCCC-
Confidence 9999999865444 678999999999999999999999998 7 99999999999965433332222
Q ss_pred cccCCHHHHHHhcchhhHHhHhcCCcceeeee---ccccCCcccccCHHHHHHhhhcccCCceEEEccchhhHHhhhccc
Q 038581 245 DARVTEQDMEETFLRPFEMCVKEGDASSVMCS---YNRVNGIPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHK 321 (792)
Q Consensus 245 ~~~~~~~~l~e~~l~PF~~ai~~g~~~~vM~s---y~~vng~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~ 321 (792)
....+.++|++.||+||+.+|++| +.+|||| |+.+|+.|||+|+++|++|||+||||+|+|||||++|+++..
T Consensus 183 ~~~~~~~el~~~~l~PF~~ai~~g-~~~vM~aHv~y~~id~~Pa~~S~~~l~~lLR~elGF~G~ViSD~l~m~a~~~--- 258 (337)
T PRK05337 183 VDERPLEEIRAEDMAPFRALIAAG-LDAVMPAHVIYPQVDPRPAGFSRYWLQDILRQELGFDGVIFSDDLSMEGAAV--- 258 (337)
T ss_pred CCCCCHHHHHhhhHHHHHHHHhcC-CCEEEeCceeccCCCCCCCcCCHHHHHHHHHHhcCCCEEEEecchhhhhhhh---
Confidence 123467899999999999999998 5699999 888999999999999999999999999999999999987654
Q ss_pred cccCCHHHHHHHHHHcCcCccCCcc---chhhHHHHHhcCCCCHHHHHhHHHHHHHHHHHh
Q 038581 322 FLADSKEDAVAQTLKAGLDLDCGQY---YTNFTGNAVQQGKVKETDIDKSLKYLYTVLMRL 379 (792)
Q Consensus 322 ~~~~~~~ea~~~al~AG~D~~~~~~---~~~~l~~av~~G~i~~~~ld~av~RiL~~k~~~ 379 (792)
..+.++++++|++||+||+|... ....+.+++.+ +++.+|+++++.+.
T Consensus 259 --~~~~~~~~~~al~AG~Dl~l~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~ 309 (337)
T PRK05337 259 --AGDYAERAQAALDAGCDMVLVCNNRDGAVSVLDNLSP--------PISAERLTRLYGRG 309 (337)
T ss_pred --cCCHHHHHHHHHHcCCCEEeeCCCHHHHHHHHHHHHh--------hccHHHHHHHhccc
Confidence 46789999999999999987532 33456666644 77889999988763
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=1.2e-38 Score=331.39 Aligned_cols=215 Identities=44% Similarity=0.633 Sum_probs=153.8
Q ss_pred hhhcccCCCCCCCCCCCCceEEEEccCccchhhhcCccc-CCCCccCChhhhhcccce---EEEeeccCCcccCCcchHH
Q 038581 413 IVLLKNDQNTLPLNSAKVKTVAVVGPHANATVAMIGNYA-GIPCRYMSPIAGFSGYAN---VTYKTGCDDVACKSNNSIF 488 (792)
Q Consensus 413 iVLLKN~~~~LPL~~~~~~kIaviG~~a~~~~~~~G~~~-g~~~~~~t~~~gl~~~~~---~~y~~g~~~~~~~~~~~~~ 488 (792)
||||||++++|||++.+. ||+|+|+.+.....++|++. ..+.+..+++++|+++.. +.+..++. .......++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999998643 99999999998766555553 356677899999998862 33222211 112456788
Q ss_pred HHHHHhhcCCEEEEEEecCCCccccc--------CCCCCCCCChhhHHHHHHHHHhcCCCEEEEEeCCceeecccccccC
Q 038581 489 AASEAAKTADATIILAGLDLSVEAES--------LDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIAFAETNT 560 (792)
Q Consensus 489 ~a~~~a~~aD~vIv~vG~~~~~~~Eg--------~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~~~~~~~ 560 (792)
++++.++++|++||++|. .++|+ .||.++.||..|.+||+++++.+ +|+|||+++++||++.++. +
T Consensus 78 ~~~~~~~~aD~vIv~~~~---~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~-~~~Ivvv~~~~P~~l~~~~--~ 151 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGR---PSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAG-KKVIVVVNSGNPYDLDPWE--D 151 (227)
T ss_dssp HHHHHHHCSSEEEEEEET---TSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHH-SCEEEEEE-SSGGCGHCCH--H
T ss_pred HHHHHhhcCCEEEEeccc---cccccccccccccCCcccccchhhHHHHHHHHHHhc-CCeEEEEecCCccccHHHH--h
Confidence 999999999999999992 23333 68999999999999999998765 6789999999999997764 4
Q ss_pred CccEEEEccCCCchhHHHHHHHHhCCCCCCCCCCeecccCCccCCCCCcCCCCCCCCCCCCCCccccccCCCCcccccCC
Q 038581 561 NIKAILWAGYPGEEGGRAIADVVFGKFNPGGRLPITWYNGDYVQMLPLTSMPLRPVDSLGYPGRTYKFYNGPTLYPFGYG 640 (792)
Q Consensus 561 ~v~Ail~a~~pG~e~g~AlAdVL~G~~nPsGkLPvT~~~~~~~~~~p~~~~~~~~~~~~~~~g~~Yr~~~~~~~ypFG~G 640 (792)
+++|||++|++|+++++|+||||||++|||||||+||+ ++. +++|..+... ..+++|++....++||||||
T Consensus 152 ~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p-~~~-~~~p~~~~~~-------~~~~~~~~~~~~~~~~fG~G 222 (227)
T PF01915_consen 152 NVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIP-KSM-EDIPAYYNYG-------MYGRTYDYDSGPPLYPFGYG 222 (227)
T ss_dssp C-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BE-SSG-GGTTTTTTTS--------THCCHHHHTTSESB-TT--
T ss_pred hhceEeeccccchHHHHHHHHHHcCCCCCCCCcceecc-CCh-hhCCCccccc-------ccCcccccCCCCccCcCCCC
Confidence 89999999999999999999999999999999999985 443 5577543211 12356777788899999999
Q ss_pred CCCCc
Q 038581 641 LSYTQ 645 (792)
Q Consensus 641 LSYTt 645 (792)
||||+
T Consensus 223 Lsyt~ 227 (227)
T PF01915_consen 223 LSYTY 227 (227)
T ss_dssp B-TT-
T ss_pred CEeeC
Confidence 99996
No 7
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.82 E-value=7.4e-21 Score=160.79 Aligned_cols=70 Identities=27% Similarity=0.488 Sum_probs=61.1
Q ss_pred eeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEeccCCCeeEEeCC-CCEEEeCeEEEEEEeCCc
Q 038581 711 DVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYA-ANTLLPAGEHTIFVGNGG 781 (792)
Q Consensus 711 eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~-~~~~~~~G~y~i~vG~ss 781 (792)
||||||+++|.++..+|.|+|+||+||+|+|||+++|+|+|++ ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999998999999999999999999999999999999 899999999 689999999999999987
No 8
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.39 E-value=0.0097 Score=53.02 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=44.4
Q ss_pred CceEEEEEEEEecCCC-CcceeEEEeeeCCCCcchhhhhhhcccccc-ccCCCCEEEEEEEeccCCCeeEEeCCCCEEEe
Q 038581 692 DDYFEFKVDFQNVGST-DGSDVVIVYSKPPAEIAATYIKQVIGFQRV-FVRAGRNKRIKFVFNACKSLNIVDYAANTLLP 769 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~-~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~ 769 (792)
++.++++++|+|.|.. ++.-.|++|+..... +-..| .|+|||+++++|++.. . .
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~----------~~~~i~~L~~g~~~~v~~~~~~-~-------------~ 73 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLDGNSV----------STVTIPSLAPGESETVTFTWTP-P-------------S 73 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE----------EEEEESEB-TTEEEEEEEEEE--S-------------S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEECCcee----------ccEEECCcCCCcEEEEEEEEEe-C-------------C
Confidence 4689999999999987 466678888876421 44555 6999999999999997 3 3
Q ss_pred CeEEEEEE
Q 038581 770 AGEHTIFV 777 (792)
Q Consensus 770 ~G~y~i~v 777 (792)
+|.|+|.+
T Consensus 74 ~G~~~i~~ 81 (101)
T PF07705_consen 74 PGSYTIRV 81 (101)
T ss_dssp -CEEEEEE
T ss_pred CCeEEEEE
Confidence 57777665
No 9
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.03 E-value=0.12 Score=44.38 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=38.1
Q ss_pred CceEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEeCe
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAANTLLPAG 771 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G 771 (792)
++.++++++|+|.|..+-. -+-|=+..|.+=. ..-..-.-..|+|||+++++|.|+..++ .++|
T Consensus 4 G~~~~~~~tv~N~g~~~~~-~v~~~l~~P~GW~----~~~~~~~~~~l~pG~s~~~~~~V~vp~~-----------a~~G 67 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLT-NVSLSLSLPEGWT----VSASPASVPSLPPGESVTVTFTVTVPAD-----------AAPG 67 (78)
T ss_dssp TEEEEEEEEEE--SSS-BS-S-EEEEE--TTSE-------EEEEE--B-TTSEEEEEEEEEE-TT-------------SE
T ss_pred CCEEEEEEEEEECCCCcee-eEEEEEeCCCCcc----ccCCccccccCCCCCEEEEEEEEECCCC-----------CCCc
Confidence 4589999999999976533 2444445554321 0011111117999999999999998432 2579
Q ss_pred EEEEEEe
Q 038581 772 EHTIFVG 778 (792)
Q Consensus 772 ~y~i~vG 778 (792)
+|.|.+-
T Consensus 68 ~y~v~~~ 74 (78)
T PF10633_consen 68 TYTVTVT 74 (78)
T ss_dssp EEEEEEE
T ss_pred eEEEEEE
Confidence 9988753
No 10
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=94.35 E-value=0.2 Score=43.50 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=34.6
Q ss_pred EEEEEEEEecCCCC------cceeEEEeeeCCCCcchh----hhhhhccccccccCCCCEEEEEEEeccCCCeeEEeCCC
Q 038581 695 FEFKVDFQNVGSTD------GSDVVIVYSKPPAEIAAT----YIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAA 764 (792)
Q Consensus 695 ~~v~v~VtNtG~~~------G~eVvQlYv~~~~~~~~~----P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~ 764 (792)
+.++++|+|+++.+ .---.-+.|.++.+.... -..=...++.+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~-~~~~------ 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDL-KDLS------ 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS-----------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECC-CCCC------
Confidence 56778888888631 111233445544443211 011123445677999999999999998 5554
Q ss_pred CEEEeCeEEEEE
Q 038581 765 NTLLPAGEHTIF 776 (792)
Q Consensus 765 ~~~~~~G~y~i~ 776 (792)
||+|++.
T Consensus 75 -----~G~Y~~~ 81 (82)
T PF12690_consen 75 -----PGEYTLE 81 (82)
T ss_dssp -----SEEEEEE
T ss_pred -----CceEEEe
Confidence 8999985
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=87.51 E-value=3.1 Score=37.23 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=39.2
Q ss_pred CceEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEeccCCCeeEE
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIV 760 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~ 760 (792)
+.....+++++|+|....+-- ++.+... .... -.-+..-.|+||++.++++++.+.+....+
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~----v~~~~~~-~~~~--~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~ 80 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFR----VRQPESL-SSFF--SVEPPSGFLAPGESVELEVTFSPTKPLGDY 80 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEE----EEeCCcC-CCCE--EEECCCCEECCCCEEEEEEEEEeCCCCceE
Confidence 457889999999999875533 3333211 1000 112344569999999999999942445444
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=87.03 E-value=19 Score=41.21 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=55.3
Q ss_pred hHhcCCcceeeeeccccCC-----cccccCHHHHHHhhhcccCCceEEEccchhhHHhhhccccccCCHHHHHHHHHHcC
Q 038581 264 CVKEGDASSVMCSYNRVNG-----IPSCADPKLLNQTVRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAG 338 (792)
Q Consensus 264 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG 338 (792)
.|+++.+ .+|.+-+++.| ..|+.++.+++.+|+-=+.. |.-+..- .|=..+|+..|
T Consensus 60 ~iDe~lv-l~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~-GaR~Aep-----------------GEFs~RAFLNg 120 (454)
T COG0486 60 IIDEVLV-LYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKL-GARLAEP-----------------GEFSKRAFLNG 120 (454)
T ss_pred EeeeeeE-EEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHc-CCeecCC-----------------CcchHHHHhcC
Confidence 5666766 88999888877 46788888888888753332 2222222 12223444433
Q ss_pred -cCccCC--------ccchhhHHHHHh--cCCCCHHHHHhHHHHHHHHHHHh
Q 038581 339 -LDLDCG--------QYYTNFTGNAVQ--QGKVKETDIDKSLKYLYTVLMRL 379 (792)
Q Consensus 339 -~D~~~~--------~~~~~~l~~av~--~G~i~~~~ld~av~RiL~~k~~~ 379 (792)
+|+.-- .........|++ +|.++ ++|++-.++++.+....
T Consensus 121 K~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls-~~i~~lr~~li~~~a~v 171 (454)
T COG0486 121 KLDLTQAEAIADLIDAKTEQAARIALRQLQGALS-QLINELREALLELLAQV 171 (454)
T ss_pred CccHHHHHHHHHHHhCCCHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHh
Confidence 554311 111123344444 46664 57888888888877664
No 13
>PRK13203 ureB urease subunit beta; Reviewed
Probab=86.12 E-value=1.4 Score=39.45 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=31.2
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhccc-------cccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGF-------QRVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 750 (792)
=+++++|+|||+|+ |||=-+..--. +..-...=.|+ .-|..+|||+|+|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46889999999985 78744432211 12122222233 2356789999999874
No 14
>PRK13202 ureB urease subunit beta; Reviewed
Probab=85.82 E-value=1.3 Score=39.65 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=31.2
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhccc-------cccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGF-------QRVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 750 (792)
-+++++|+|||+|+ |||=-+..--. +......=.|+ .-|..+|||+++|++.
T Consensus 21 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 46889999999885 77743332211 11122222233 2356789999999874
No 15
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=83.93 E-value=1.9 Score=38.54 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=31.4
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCC----cchhhhhhhcccc-------ccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAE----IAATYIKQVIGFQ-------RVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~----~~~~P~k~L~gF~-------kv~L~pGes~~V~~~ 750 (792)
=+++++|+|||+|+ ||+=-+..-- .+......=.||+ -|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 46889999999885 7774333211 1222222223332 356789999999874
No 16
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=82.70 E-value=2.2 Score=38.13 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=31.3
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhccc-------cccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGF-------QRVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 750 (792)
=+++++|+|||+|+ |||=-+..--. +..-...=.|+ .-|..+|||+++|++-
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46889999999885 77743332211 12222222333 2356789999999874
No 17
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=80.51 E-value=3.2 Score=37.47 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=21.7
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEec
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFN 752 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~ 752 (792)
.|+++++|.|... .+++ +.. .+ ....|.||++++++|+-.
T Consensus 44 ~v~l~~~N~~~~~-h~~~---i~~------------~~-~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEFV---IPD------------LG-ISKVLPPGETATVTFTPL 83 (104)
T ss_dssp EEEEEEEE-SSS--EEEE---EGG------------GT-EEEEE-TT-EEEEEEEE-
T ss_pred eEEEEEEECCCCc-EEEE---ECC------------Cc-eEEEECCCCEEEEEEcCC
Confidence 3567789999875 3322 111 22 236799999999988543
No 18
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=79.74 E-value=3.6 Score=36.73 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=28.5
Q ss_pred eEEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhcccc-------ccccCCCCEEEEEEE
Q 038581 694 YFEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGFQ-------RVFVRAGRNKRIKFV 750 (792)
Q Consensus 694 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF~-------kv~L~pGes~~V~~~ 750 (792)
.-+++++|+|||+|+ |||=-+..-.. +......=.|++ -|..+|||+|+|++.
T Consensus 18 r~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 18 RERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp SEEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred CcEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 457899999999985 78743332211 222222223332 356789999999873
No 19
>PRK13201 ureB urease subunit beta; Reviewed
Probab=79.27 E-value=3.3 Score=38.75 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=31.8
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhccc-------cccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGF-------QRVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 750 (792)
-+++++|+|||+|+ |||=-+..--. +..-...-.|| .-|..+|||+++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46889999999985 78743332211 12222222333 2356799999999984
No 20
>PRK13205 ureB urease subunit beta; Reviewed
Probab=78.54 E-value=3.5 Score=39.44 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=32.4
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhcccc-------ccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGFQ-------RVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF~-------kv~L~pGes~~V~~~ 750 (792)
=+++++|+|||+|+ |||=-+..--. +......-.||+ -|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46889999999985 78744332211 222222223332 356799999999985
No 21
>PRK13204 ureB urease subunit beta; Reviewed
Probab=78.15 E-value=3.6 Score=39.47 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=31.6
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhccc-------cccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGF-------QRVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 750 (792)
=.++++|+|||+|+ |||=-+..--. +......=.|+ .-|..+|||+++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 45889999999985 77743332211 22222222333 2356799999999884
No 22
>PRK13198 ureB urease subunit beta; Reviewed
Probab=76.85 E-value=4.1 Score=39.03 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=31.7
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhcccc-------ccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGFQ-------RVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF~-------kv~L~pGes~~V~~~ 750 (792)
=+++++|+|||+|+ |||=-+..--. +......-.||+ -|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 46889999999985 77743332211 222222223332 356799999999884
No 23
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=75.07 E-value=4.5 Score=35.96 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=30.7
Q ss_pred eEEEEEEEEecCCCCcceeEEEeeeCCC----Ccchhhhhhhccc-------cccccCCCCEEEEEEE
Q 038581 694 YFEFKVDFQNVGSTDGSDVVIVYSKPPA----EIAATYIKQVIGF-------QRVFVRAGRNKRIKFV 750 (792)
Q Consensus 694 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~----~~~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 750 (792)
.-+++++|+|||+|+ +|+=-+.-- ..+..-...-.|+ .-|..+||+.|+|++-
T Consensus 19 r~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 19 RPTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred CcceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 456788899999985 676332211 1111111112222 3467799999999873
No 24
>COG1470 Predicted membrane protein [Function unknown]
Probab=74.06 E-value=11 Score=42.78 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=46.9
Q ss_pred CceEEEEEEEEecCCCCcceeEEEeee-CCCCc-chhhhhhhccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEe
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIVYSK-PPAEI-AATYIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAANTLLP 769 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQlYv~-~~~~~-~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~ 769 (792)
+.+..++|++.|-|.-+ +-.-|=++ .|..= ...-.-++ .-.||.|.|||+++|++++.++. -.+
T Consensus 283 ~~t~sf~V~IeN~g~~~--d~y~Le~~g~pe~w~~~Fteg~~-~vt~vkL~~gE~kdvtleV~ps~-----------na~ 348 (513)
T COG1470 283 STTASFTVSIENRGKQD--DEYALELSGLPEGWTAEFTEGEL-RVTSVKLKPGEEKDVTLEVYPSL-----------NAT 348 (513)
T ss_pred CCceEEEEEEccCCCCC--ceeEEEeccCCCCcceEEeeCce-EEEEEEecCCCceEEEEEEecCC-----------CCC
Confidence 45788999999999643 22223333 33221 11011111 23577899999999999999843 136
Q ss_pred CeEEEEEEeCCc
Q 038581 770 AGEHTIFVGNGG 781 (792)
Q Consensus 770 ~G~y~i~vG~ss 781 (792)
||+|.+.|-.++
T Consensus 349 pG~Ynv~I~A~s 360 (513)
T COG1470 349 PGTYNVTITASS 360 (513)
T ss_pred CCceeEEEEEec
Confidence 899988775544
No 25
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=71.22 E-value=6.4 Score=39.70 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=31.4
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhcccc-------ccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGFQ-------RVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF~-------kv~L~pGes~~V~~~ 750 (792)
-+++++|+|||+|+ |||=-+..--. +....+.=.||+ -|..+|||+|+|++-
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46889999999985 77743332211 122222223332 356789999999874
No 26
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=68.56 E-value=5.8 Score=40.73 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=35.7
Q ss_pred EEEecCCCCcceeEEEeeeCCCCcc--hhh--------hhhhccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEe
Q 038581 700 DFQNVGSTDGSDVVIVYSKPPAEIA--ATY--------IKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAANTLLP 769 (792)
Q Consensus 700 ~VtNtG~~~G~eVvQlYv~~~~~~~--~~P--------~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~ 769 (792)
++-|.|. |.-+++||-+.+.... ..| .+.+.+..++.|.|||| ++|.+.---+||- |
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGES----iTL~Pg~yH~Fw~-------e 177 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGES----ITLPPGIYHWFWG-------E 177 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-E----EEE-TTEEEEEEE--------
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCe----EeeCCCCeeeEEe-------c
Confidence 4467764 7888999998875442 112 35688899999999997 5566632234554 4
Q ss_pred CeEEEEEEeCCc
Q 038581 770 AGEHTIFVGNGG 781 (792)
Q Consensus 770 ~G~y~i~vG~ss 781 (792)
+|. ++||--|
T Consensus 178 ~g~--vLigEVS 187 (225)
T PF07385_consen 178 GGD--VLIGEVS 187 (225)
T ss_dssp TTS--EEEEEEE
T ss_pred CCC--EEEEeee
Confidence 444 6666533
No 27
>PRK13986 urease subunit alpha; Provisional
Probab=68.16 E-value=7.9 Score=39.49 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=31.3
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhccc-------cccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGF-------QRVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF-------~kv~L~pGes~~V~~~ 750 (792)
=+++++|+|||+|+ |||=-+..--. +..-...=.|| .-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 46889999999985 77743332211 11112222233 2356799999999874
No 28
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=67.16 E-value=24 Score=32.97 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=38.3
Q ss_pred ceEEEEEEEEecCCCCcceeEEEeeeCCCC-----------------cchhhhhhhccccc-cccCCCCEEEEEEEecc
Q 038581 693 DYFEFKVDFQNVGSTDGSDVVIVYSKPPAE-----------------IAATYIKQVIGFQR-VFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 693 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~-----------------~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~~ 753 (792)
...+++++|+|+++-. -.+++++..-.+ ++..+..+|....+ |.|+|+|+++|+|+|..
T Consensus 27 q~~~l~v~i~N~s~~~--~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKE--ITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred CEEEEEEEEEeCCCCC--EEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 4677888888877633 234444432111 12235566666654 67999999999999987
No 29
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=66.42 E-value=8.6 Score=35.65 Aligned_cols=55 Identities=9% Similarity=0.137 Sum_probs=37.3
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCC-cchhhhhhhcccccc-ccCCCCEEEEEEEecc
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAE-IAATYIKQVIGFQRV-FVRAGRNKRIKFVFNA 753 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~-~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~ 753 (792)
..+++|+|+|+ -.-.+|+.+..-.. ....+...|.-+=.. .|+||++++|.| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999998 56678998887211 112223345545444 589999999999 544
No 30
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.93 E-value=25 Score=40.01 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=47.5
Q ss_pred CceEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhcccccc-ccCCCCEEEEEEEeccCCCeeEEeCCCCEEEeC
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRV-FVRAGRNKRIKFVFNACKSLNIVDYAANTLLPA 770 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv-~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~ 770 (792)
++..++.+.|.|+|+.+=+. +-|=|..|.+= ..+.-.+ ++ .|+|||+++|.++++.-++- .+
T Consensus 396 Gee~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW----ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~a-----------~a 458 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTD-IKLTVNGPQGW----EIEVDES-TIPSLEPGESKTVSLTITVPEDA-----------GA 458 (513)
T ss_pred CccceEEEEEEecCCCccce-eeEEecCCccc----eEEECcc-cccccCCCCcceEEEEEEcCCCC-----------CC
Confidence 45678899999999776555 34556666541 1234445 45 58999999999999873321 45
Q ss_pred eEEEEEEeC
Q 038581 771 GEHTIFVGN 779 (792)
Q Consensus 771 G~y~i~vG~ 779 (792)
|+|+|.+=.
T Consensus 459 GdY~i~i~~ 467 (513)
T COG1470 459 GDYRITITA 467 (513)
T ss_pred CcEEEEEEE
Confidence 667666654
No 31
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=61.82 E-value=27 Score=31.86 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=31.4
Q ss_pred ceEEEEEEEEecCCCCcceeEEEe-----eeCCCC-c-chh---hhhhhcccc--ccccCCCCEEEEEEEecc
Q 038581 693 DYFEFKVDFQNVGSTDGSDVVIVY-----SKPPAE-I-AAT---YIKQVIGFQ--RVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 693 ~~~~v~v~VtNtG~~~G~eVvQlY-----v~~~~~-~-~~~---P~k~L~gF~--kv~L~pGes~~V~~~l~~ 753 (792)
...+.+++++|.|+.+=.--+... ..+... . ... +......|. ++.|+||++++|+++|+.
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 358899999999986544333333 111011 1 011 111134444 567899999999999998
No 32
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=61.04 E-value=23 Score=30.93 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=30.2
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEecc
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 753 (792)
.+.++++|.|+.+ -.++||-.. + ....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~--~~~~v~~~~-y-~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAA--VTFTVYDNA-Y-GGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCc--EEEEEEeCC-c-CCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6888889986432 244444321 1 11222 5678999999999999854
No 33
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=60.93 E-value=18 Score=39.97 Aligned_cols=56 Identities=7% Similarity=0.106 Sum_probs=31.2
Q ss_pred CceEEEEEEEEecCCCCcceeEEE--e----eeCCCCc-----chhhhhhhcccc------ccccCCCCEEEEEEEec
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIV--Y----SKPPAEI-----AATYIKQVIGFQ------RVFVRAGRNKRIKFVFN 752 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQl--Y----v~~~~~~-----~~~P~k~L~gF~------kv~L~pGes~~V~~~l~ 752 (792)
+++++++++|||+|+ +.|+| | +++.+.. ...| .+|.+-+ .--++|||+++++++..
T Consensus 262 gR~l~~~l~VtN~g~----~pv~LgeF~tA~vrFln~~v~~~~~~~P-~~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 262 GRTLTMTLTVTNNGD----SPVRLGEFNTANVRFLNPDVPTDDPDYP-DELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp SSEEEEEEEEEEESS----S-BEEEEEESSS-EEE-TTT-SS-S----TTTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred CcEEEEEEEEEcCCC----CceEeeeEEeccEEEeCcccccCCCCCc-hhhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 468999999999986 44554 2 1221111 1223 3555542 12489999999999984
No 34
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=59.46 E-value=13 Score=33.71 Aligned_cols=60 Identities=15% Similarity=0.075 Sum_probs=34.5
Q ss_pred CceEEEEEEEEecCCCCcceeEEEeee--CC-CCcchhhhhhhccccccccCCCCEEEEEEEecc
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIVYSK--PP-AEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQlYv~--~~-~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 753 (792)
+..++|+++++|..+..-+. |++.+. .- ++.+.+ ..-.+-...+.|+|||++++++++.+
T Consensus 14 G~d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~-~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTR-DQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEE-EEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CCCEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCccc-ccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 45799999999999887443 222221 11 111111 11234444567999999999999988
No 35
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=57.97 E-value=9.2 Score=35.08 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=32.7
Q ss_pred cccccCCCCCCceeeeccccccceecccccccccccccccCCCccCCCCcccccCCCCCceEEEEEEEEecCCCCcceeE
Q 038581 634 LYPFGYGLSYTQFKYNLLSFTKTIQVNLNKLQHCRNLNYTSDASKTRCPGVLVNDLRCDDYFEFKVDFQNVGSTDGSDVV 713 (792)
Q Consensus 634 ~ypFG~GLSYTtF~ys~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~VtNtG~~~G~eVv 713 (792)
.|-.-||+.||+|+...-.+...+.+-+.. .++.=-..++|+|+|++.=+=-|
T Consensus 31 ~y~~~~g~g~~~f~~~~~gi~~~~~v~V~~---------------------------~~~vEi~~l~l~N~~~~~r~L~v 83 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGGIETELTVFVPP---------------------------DDPVEIRRLRLTNTSNRPRRLSV 83 (110)
T ss_dssp EEEEEEESSEEEEEEEETTEEEEEEEE--T---------------------------TSSEEEEEEEEEE-SSS-EEEEE
T ss_pred cEEEEECCCeEEEEEEeCCEEEEEEEEEcC---------------------------CCCEEEEEEEEEECcCCcEEEEE
Confidence 488999999999998765433222221111 12223357999999987654333
Q ss_pred EEeee
Q 038581 714 IVYSK 718 (792)
Q Consensus 714 QlYv~ 718 (792)
=-|+.
T Consensus 84 tsy~E 88 (110)
T PF06165_consen 84 TSYAE 88 (110)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 33444
No 36
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=55.47 E-value=28 Score=33.70 Aligned_cols=55 Identities=7% Similarity=0.100 Sum_probs=42.4
Q ss_pred ceEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccc-cCCCCEEEEEEEecc
Q 038581 693 DYFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVF-VRAGRNKRIKFVFNA 753 (792)
Q Consensus 693 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~-L~pGes~~V~~~l~~ 753 (792)
..+.|.++.+|+++. ++--+-+..+.- ..-.++++|.++. |+||++.++.+-|+-
T Consensus 85 ~mvsIql~ftN~s~~---~i~~I~i~~k~l---~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 85 SMVSIQLTFTNNSDE---PIKNIHIGEKKL---PAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred CcEEEEEEEEecCCC---eecceEECCCCC---CCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 368899999999974 444456666541 2335799999996 999999999998886
No 37
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=53.77 E-value=27 Score=26.47 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=25.9
Q ss_pred EEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEE
Q 038581 698 KVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFV 750 (792)
Q Consensus 698 ~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~ 750 (792)
+++++|+|+.. |.|.....+=. =....+.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~------L~I~~v~tsCg---Ct~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP------LVITDVQTSCG---CTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc------EEEEEeeEccC---CEEeeCCcceECCCCEEEEEEE
Confidence 36789998642 33333222200 0123456666999999998876
No 38
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=52.52 E-value=37 Score=32.71 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=38.5
Q ss_pred CceEEEEEEEEecCCCCccee-EEE--eeeC-CCCc-chhhhhhhcccccc------ccCCCCEEEEEEEecc
Q 038581 692 DDYFEFKVDFQNVGSTDGSDV-VIV--YSKP-PAEI-AATYIKQVIGFQRV------FVRAGRNKRIKFVFNA 753 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eV-vQl--Yv~~-~~~~-~~~P~k~L~gF~kv------~L~pGes~~V~~~l~~ 753 (792)
++.+.|..+|||+|+++=+++ +++ +=.. .... ...=..++.+|.+. .|+|||++.-++.++.
T Consensus 61 ~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 61 SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 468999999999999866553 222 2111 1111 12233455566322 2999999999998874
No 39
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=49.80 E-value=14 Score=40.80 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=34.2
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChh--hHHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGY--QTQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||+||+..|... .+|.+|.++--... -.++++++.+.+++..|+++. ++|+|+
T Consensus 75 ~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 75 EAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 56789999999988542 45666654321111 134555666655534554444 589976
No 40
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.50 E-value=13 Score=33.17 Aligned_cols=25 Identities=36% Similarity=0.268 Sum_probs=14.2
Q ss_pred CcchhHHHHHHHHHHHHHHhccCCC
Q 038581 1 MAKVVSSLLCFSLSIALLVFSTNAV 25 (792)
Q Consensus 1 m~~~~~~~~~~~l~~~~~~~~~~~~ 25 (792)
|.++..++|+++|+++|+.++..++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 7666655666665555555544443
No 41
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=48.29 E-value=44 Score=34.94 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=32.8
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhcccc-ccccCCCCEEEEEEEec
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQ-RVFVRAGRNKRIKFVFN 752 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~-kv~L~pGes~~V~~~l~ 752 (792)
.++++|+|+|+. .-.||.-+.+.... +...+.-.= -..|+||+++.|++-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~---~~~~fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPED---KSKLLLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCC---CCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 467888999975 47888888754322 111111111 14689999999998643
No 42
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=48.24 E-value=14 Score=35.39 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHhccCCCCC
Q 038581 5 VSSLLCFSLSIALLVFSTNAVDA 27 (792)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~ 27 (792)
-..|||++|+|+||||....+.+
T Consensus 3 tcRLLCalLvlaLcCCpsvc~t~ 25 (143)
T PF01456_consen 3 TCRLLCALLVLALCCCPSVCATA 25 (143)
T ss_pred hHHHHHHHHHHHHHcCcchhccc
Confidence 34689999999999887766543
No 43
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=47.10 E-value=51 Score=30.98 Aligned_cols=54 Identities=22% Similarity=0.449 Sum_probs=31.5
Q ss_pred EEEEEEEecCCCC----cceeEEEeeeCCCCc--ch------------hhh--hhhccccccccCCCCEEEEEEEecc
Q 038581 696 EFKVDFQNVGSTD----GSDVVIVYSKPPAEI--AA------------TYI--KQVIGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 696 ~v~v~VtNtG~~~----G~eVvQlYv~~~~~~--~~------------~P~--k~L~gF~kv~L~pGes~~V~~~l~~ 753 (792)
+|+|+.+|+|+.+ |.-.|- ..+... +. -|. .+..+..| -|.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTk-liggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTK-VIGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEcc-ccCCCceEEEEEECCC
Confidence 5888899999876 666663 222211 00 011 12222211 2699999999999863
No 44
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=45.76 E-value=47 Score=36.70 Aligned_cols=57 Identities=9% Similarity=0.195 Sum_probs=33.7
Q ss_pred CceEEEEEEEEecCCCCcceeEEE--e----eeCCCC------cchhhhhhhcc--cc---ccccCCCCEEEEEEEecc
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIV--Y----SKPPAE------IAATYIKQVIG--FQ---RVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQl--Y----v~~~~~------~~~~P~k~L~g--F~---kv~L~pGes~~V~~~l~~ 753 (792)
+..++++++|||.|+ +.|.| | |++.+. ....|. +|.+ -. ..-++|||+|+|+++..-
T Consensus 281 GR~l~~~~~VTN~g~----~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 281 GRALRVTMEITNNGD----QVISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred CcEEEEEEEEEcCCC----CceEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 468999999999986 33333 1 112111 112343 3332 22 123899999999988753
No 45
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=45.48 E-value=48 Score=31.15 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=38.9
Q ss_pred eEEEEEEEEecCCC----CcceeEEEeeeCCCCc-ch-hhhhhhccccccccCCCCEEEEEEEecc
Q 038581 694 YFEFKVDFQNVGST----DGSDVVIVYSKPPAEI-AA-TYIKQVIGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 694 ~~~v~v~VtNtG~~----~G~eVvQlYv~~~~~~-~~-~P~k~L~gF~kv~L~pGes~~V~~~l~~ 753 (792)
.-.+.+++||+|+. .|-=-|++. +.... +. ...++-..=+.|.|+||++....|....
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~--~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALV--DADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEE--CCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 34788999999985 566566666 22222 11 2223333566788999999999988876
No 46
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=45.11 E-value=1.1e+02 Score=35.24 Aligned_cols=58 Identities=31% Similarity=0.369 Sum_probs=33.9
Q ss_pred chHHHHHHHhhc--CCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHHhcCCCEEEEEeCCceeecc
Q 038581 485 NSIFAASEAAKT--ADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIA 554 (792)
Q Consensus 485 ~~~~~a~~~a~~--aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~ 554 (792)
..+.+|.+.+.. .|++|++=|. +...+|. +=++.++++++++ ++.|||.- .|-=.|.+
T Consensus 179 ~~i~~al~~~~~~~~Dviii~RGG--------GS~eDL~-~Fn~e~v~~ai~~-~~~Pvis~--IGHE~D~t 238 (438)
T PRK00286 179 ASIVAAIERANARGEDVLIVARGG--------GSLEDLW-AFNDEAVARAIAA-SRIPVISA--VGHETDFT 238 (438)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCC--------CCHHHhh-ccCcHHHHHHHHc-CCCCEEEe--ccCCCCcc
Confidence 345556655554 5987776552 2222332 3356789999985 68897653 35444444
No 47
>COG1160 Predicted GTPases [General function prediction only]
Probab=43.05 E-value=62 Score=37.03 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHHhcCCCEEEEEeC
Q 038581 488 FAASEAAKTADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMS 547 (792)
Q Consensus 488 ~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~ 547 (792)
+++..++++||++|+++-.. +| +.....++.+-+. ..+||+|+|+|-
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~-----~G-------it~~D~~ia~~Lr-~~~kpviLvvNK 121 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR-----EG-------ITPADEEIAKILR-RSKKPVILVVNK 121 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC-----CC-------CCHHHHHHHHHHH-hcCCCEEEEEEc
Confidence 34666789999999998422 22 2333444444454 566899999883
No 48
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=42.69 E-value=1.1e+02 Score=29.37 Aligned_cols=62 Identities=5% Similarity=-0.094 Sum_probs=43.2
Q ss_pred CceEEEEEEEEecCCCCcce-eEEEeeeCCCCc-----chhhhhhhccc--cccccCCCCEEEEEEEecc
Q 038581 692 DDYFEFKVDFQNVGSTDGSD-VVIVYSKPPAEI-----AATYIKQVIGF--QRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~e-VvQlYv~~~~~~-----~~~P~k~L~gF--~kv~L~pGes~~V~~~l~~ 753 (792)
.+.+.|+.+++|+++.+=.- .++|-+.+..+. +-.|..-|..- .+..|+||++.++++.+..
T Consensus 67 ~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 67 PGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred CCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 45899999999999864432 456666666554 23565555543 2446999999999998874
No 49
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=42.66 E-value=17 Score=39.86 Aligned_cols=56 Identities=25% Similarity=0.262 Sum_probs=32.1
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhh----HHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQ----TQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||+||+..|... .+|.+|.++- ... .++++++.+.+++..++ ++.++|+|+
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~N~~I~~~i~~~i~~~a~~~~iv-ivvtNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADLL--TKNTPIFKATGEALSEYAKPTVKV-LVIGNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHH--HHHHHHHHHHHHHHHhhCCCCeEE-EEeCCchHH
Confidence 45789999999888542 3555665431 112 23445555544333443 344689987
No 50
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=40.77 E-value=1.7e+02 Score=24.95 Aligned_cols=77 Identities=14% Similarity=0.172 Sum_probs=45.0
Q ss_pred eEEEEEEEEec-CCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEeccCCCeeEEeCCCCEEEeCeE
Q 038581 694 YFEFKVDFQNV-GSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYAANTLLPAGE 772 (792)
Q Consensus 694 ~~~v~v~VtNt-G~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~~~~~~~~G~ 772 (792)
.+++++.+-|. ....--.-.++|++..... . .+.....-.|.||++..|+|.+.. +.. +.+..|.+++..|
T Consensus 5 ~f~A~i~il~~~~~i~~Gy~~~l~~~t~~~~----~-~i~~i~~~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g- 76 (87)
T cd03708 5 EFEAEILVLHHPTTISPGYQATVHIGSIRQT----A-RIVSIDKDVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG- 76 (87)
T ss_pred EEEEEEEEEcCCCcccCCCEeEEEEcCCEEE----E-EEEeccHhhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-
Confidence 46666666662 3332234456676654321 1 111111256899999999999643 345 4455677888888
Q ss_pred EEEEEe
Q 038581 773 HTIFVG 778 (792)
Q Consensus 773 y~i~vG 778 (792)
-++-+|
T Consensus 77 ~tva~G 82 (87)
T cd03708 77 RTKGVG 82 (87)
T ss_pred CcEEEE
Confidence 577666
No 51
>PLN02303 urease
Probab=38.83 E-value=38 Score=41.72 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=32.2
Q ss_pred EEEEEEEEecCCCCcceeEEEeeeCCCCc----chhhhhhhcccc-------ccccCCCCEEEEEEE
Q 038581 695 FEFKVDFQNVGSTDGSDVVIVYSKPPAEI----AATYIKQVIGFQ-------RVFVRAGRNKRIKFV 750 (792)
Q Consensus 695 ~~v~v~VtNtG~~~G~eVvQlYv~~~~~~----~~~P~k~L~gF~-------kv~L~pGes~~V~~~ 750 (792)
=+++++|+|||+|+ |||=-+..--. +..-...=.||+ -|..+|||+|+|++.
T Consensus 150 ~~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 150 KAVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred CeEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 35889999999985 78744432211 122222223332 356799999999985
No 52
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=37.97 E-value=8.3 Score=37.00 Aligned_cols=54 Identities=28% Similarity=0.439 Sum_probs=30.3
Q ss_pred HhhcCCEEEEEEecCCCcccccCCCCCCCCChhhHH----HHHHHHHhcCCCEEEEEeCCceeec
Q 038581 493 AAKTADATIILAGLDLSVEAESLDREDLWLPGYQTQ----LINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 493 ~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
..++||++|++.|... .+|.+|.++- ....+ +.+++.+.+++.+++| ..+|+++
T Consensus 66 ~~~~aDivvitag~~~---~~g~sR~~ll--~~N~~i~~~~~~~i~~~~p~~~viv--vtNPvd~ 123 (141)
T PF00056_consen 66 ALKDADIVVITAGVPR---KPGMSRLDLL--EANAKIVKEIAKKIAKYAPDAIVIV--VTNPVDV 123 (141)
T ss_dssp GGTTESEEEETTSTSS---STTSSHHHHH--HHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHH
T ss_pred ccccccEEEEeccccc---cccccHHHHH--HHhHhHHHHHHHHHHHhCCccEEEE--eCCcHHH
Confidence 4678999888877542 4555554331 22223 3445555565554433 3679886
No 53
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=37.38 E-value=60 Score=24.89 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCHHHHHhHHHHHHHHHHHhc
Q 038581 351 TGNAVQQGKVKETDIDKSLKYLYTVLMRLG 380 (792)
Q Consensus 351 l~~av~~G~i~~~~ld~av~RiL~~k~~~G 380 (792)
....++.-.-+.+.||..|..+|.+|.++|
T Consensus 13 ~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 13 LVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 344456667789999999999999999988
No 54
>PRK05442 malate dehydrogenase; Provisional
Probab=36.13 E-value=31 Score=38.09 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhH----HHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQT----QLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||+||+..|... .+|.+|.++- .... ++.+++.+..++..+++ +.++|+|+
T Consensus 76 ~~~~daDiVVitaG~~~---k~g~tR~dll--~~Na~i~~~i~~~i~~~~~~~~iii-vvsNPvDv 135 (326)
T PRK05442 76 VAFKDADVALLVGARPR---GPGMERKDLL--EANGAIFTAQGKALNEVAARDVKVL-VVGNPANT 135 (326)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHHhCCCCeEEE-EeCCchHH
Confidence 56789999999888532 3566665432 2222 34445554332234443 34589987
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=35.67 E-value=98 Score=29.62 Aligned_cols=16 Identities=31% Similarity=0.578 Sum_probs=13.9
Q ss_pred ccCCCCEEEEEEEecc
Q 038581 738 FVRAGRNKRIKFVFNA 753 (792)
Q Consensus 738 ~L~pGes~~V~~~l~~ 753 (792)
.|+|||+++++|+.+.
T Consensus 95 ~I~pGet~TitF~adK 110 (135)
T TIGR03096 95 VIKAGETKTISFKADK 110 (135)
T ss_pred EECCCCeEEEEEECCC
Confidence 4899999999998875
No 56
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=35.49 E-value=48 Score=26.09 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=16.7
Q ss_pred CceEEEEEEEEecCCCCcce
Q 038581 692 DDYFEFKVDFQNVGSTDGSD 711 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~e 711 (792)
++.++.+++|+|+|......
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~ 30 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATN 30 (53)
T ss_pred CCEEEEEEEEEECCCCceEe
Confidence 57899999999999876543
No 57
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=34.91 E-value=31 Score=37.98 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=32.4
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhH----HHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQT----QLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||+||++.|... .+|.+|.++- .... ++..++.+.+++..|++ +.++|+|+
T Consensus 74 ~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~~~~~~iii-vvsNPvD~ 133 (322)
T cd01338 74 VAFKDADWALLVGAKPR---GPGMERADLL--KANGKIFTAQGKALNDVASRDVKVL-VVGNPCNT 133 (322)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEE-EecCcHHH
Confidence 56789999999988543 3455665431 2222 34445555442234443 44689976
No 58
>PLN00135 malate dehydrogenase
Probab=33.90 E-value=33 Score=37.53 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCCh--hhHHHHHHHHHh-cCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPG--YQTQLINQVAEV-AKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~-~~kpvVvVl~~g~P~~l 553 (792)
+..+.||+||+..|... .+|.+|.++--.. --.++++++.+. ++ ..++++ .++|+|+
T Consensus 54 ~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p-~aiviv-vsNPvDv 113 (309)
T PLN00135 54 EACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAP-DCKVLV-VANPANT 113 (309)
T ss_pred HHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEE-eCCcHHH
Confidence 46789999999988643 3455664432111 012445566553 34 344444 4589977
No 59
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=33.50 E-value=47 Score=27.85 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=17.3
Q ss_pred CceEEEEEEEEecCCCCcce
Q 038581 692 DDYFEFKVDFQNVGSTDGSD 711 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~e 711 (792)
++.++.+++|+|+|+.....
T Consensus 40 Gd~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATN 59 (76)
T ss_pred CCEEEEEEEEEECCCCeeEe
Confidence 57999999999999987555
No 60
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=33.45 E-value=2.2e+02 Score=32.72 Aligned_cols=57 Identities=28% Similarity=0.316 Sum_probs=32.6
Q ss_pred hHHHHHHHhhc---CCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHHhcCCCEEEEEeCCceeecc
Q 038581 486 SIFAASEAAKT---ADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIA 554 (792)
Q Consensus 486 ~~~~a~~~a~~---aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~ 554 (792)
.+..+.+.+.. .|++||+=|. +...+|. +=++..+++++++ ++.|||.- .|-=.|.+
T Consensus 174 ~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~-~~~Pvis~--iGHe~D~t 233 (432)
T TIGR00237 174 SIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFL-SKIPIISA--VGHETDFT 233 (432)
T ss_pred HHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHc-CCCCEEEe--cCcCCCcc
Confidence 44455554433 6987776552 2222332 3356778899975 78897653 35455544
No 61
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=32.90 E-value=35 Score=37.36 Aligned_cols=58 Identities=28% Similarity=0.343 Sum_probs=34.7
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCC--hhhHHHHHHHHHhcCCCEEEEEeCCceeecc
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLP--GYQTQLINQVAEVAKGPVILVIMSAGGVDIA 554 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp--~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~ 554 (792)
+..+.||+||++.|... ++|-+|.+|--. .--.++.+++.+.+++ .+++ +.++|+++.
T Consensus 65 ~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivl-VvtNPvD~~ 124 (313)
T COG0039 65 EDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVL-VVTNPVDIL 124 (313)
T ss_pred hhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEE-EecCcHHHH
Confidence 45689999999998653 556666544211 1123455666665554 4433 346799873
No 62
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=32.44 E-value=45 Score=38.87 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=34.3
Q ss_pred hhcccCCceEEEccchhhHHhhhccccccCCHHHHHHHHHHcCcCccCC
Q 038581 296 VRGEWDLHGYIVADCDSIQVMVDNHKFLADSKEDAVAQTLKAGLDLDCG 344 (792)
Q Consensus 296 LR~e~gf~G~VvSD~~~~~~~~~~~~~~~~~~~ea~~~al~AG~D~~~~ 344 (792)
|++=+||+|.|+||.++-+...- .....++++...---.-|.|+.|.
T Consensus 75 lh~f~~w~g~ilTDSGgfQv~s~--g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 75 LHKLLGFDGPIMTDSGSYQLLVY--GDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HHHHhCCCCCeEeccCCcEEEEc--CCccCCHHHHHHHHHHhCCCEEeE
Confidence 66778999999999998654432 122457877766666779999874
No 63
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=31.85 E-value=32 Score=30.37 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=13.6
Q ss_pred ccccCCCCEEEEEEEecc
Q 038581 736 RVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 736 kv~L~pGes~~V~~~l~~ 753 (792)
++.|+|||+++|.|-+-.
T Consensus 67 ~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 67 RVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp EEEE-TT-EEEEEEEEEE
T ss_pred EEEECCCCEEEEEEEEEE
Confidence 578999999999998764
No 64
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=31.42 E-value=1.8e+02 Score=25.37 Aligned_cols=64 Identities=14% Similarity=0.037 Sum_probs=41.8
Q ss_pred eEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEeccCCCeeEEeCC
Q 038581 694 YFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNACKSLNIVDYA 763 (792)
Q Consensus 694 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~~~~ls~~d~~ 763 (792)
.++|.+++.|.+.....-.+++.+.++....... .-..+.+..++...+.++++. +....|+..
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p~ 82 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKKVVT-----QSPVVSLSAPGQARITLTIEI-PNPKLWSPE 82 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEEEEE-----EEEEEEECCCCEEEEEEEEEE-ESS-BBESS
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCEEEE-----eeeEEEecCCceeEEEEEEEc-CCCCCcCCC
Confidence 5777777799999999999999998876542211 222334566666666455554 346788773
No 65
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=31.11 E-value=33 Score=37.33 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=33.1
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChh--hHHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGY--QTQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||++|++.|... .+|.+|.++..-.. -.++.+++.+.+++ .+ |++.++|.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~-~~-viv~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKYGPD-AI-ILVVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eE-EEEccChHHH
Confidence 46789999999998543 35666654322111 12344555554443 44 4455689976
No 66
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=31.01 E-value=98 Score=25.28 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=16.3
Q ss_pred CChhHHHHHHHhcCCHHHHHhh
Q 038581 59 LPYSIRVKDLVSRMTLDEKVQQ 80 (792)
Q Consensus 59 ~~~~~r~~~ll~~MTleEKv~q 80 (792)
+++|+|.+.|=.++--.|+-.+
T Consensus 28 ltiEqRLa~LE~rL~~ae~ra~ 49 (60)
T PF11471_consen 28 LTIEQRLAALEQRLQAAEQRAQ 49 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 4789999988888776665443
No 67
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.88 E-value=43 Score=36.88 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChh--hHHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGY--QTQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~--q~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||+||+..|... .+|.+|.++-.... -.++..++.+.++...++++ .++|+|+
T Consensus 72 ~~~~~aDiVVitAG~~~---~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~ 131 (323)
T cd00704 72 EAFKDVDVAILVGAFPR---KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANT 131 (323)
T ss_pred HHhCCCCEEEEeCCCCC---CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHH
Confidence 56789999999888542 34556654321111 12344555554323344444 4689986
No 68
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=29.82 E-value=3e+02 Score=24.31 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=34.4
Q ss_pred CceEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEecc
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 753 (792)
++..++++.++|+.+.+-.=--.+|==+..+-...|. ...++++.|.++|+.+|+..-+.
T Consensus 23 ~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 23 NGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp CCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred CCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 4689999999999877655444445445555433333 25788999999999998876654
No 69
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=29.60 E-value=52 Score=36.10 Aligned_cols=56 Identities=27% Similarity=0.388 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhh---HHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQ---TQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q---~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||++|++.|... .+|.+|.++ |+.+- .+..+++.+.+++ .+ +++..+|+|+
T Consensus 63 ~~~~daDivvitaG~~~---~~g~~R~dl-l~~N~~I~~~i~~~i~~~~p~-~i-iivvsNPvDv 121 (312)
T TIGR01772 63 NALKGADVVVIPAGVPR---KPGMTRDDL-FNVNAGIVKDLVAAVAESCPK-AM-ILVITNPVNS 121 (312)
T ss_pred HHcCCCCEEEEeCCCCC---CCCccHHHH-HHHhHHHHHHHHHHHHHhCCC-eE-EEEecCchhh
Confidence 46789999999998543 345666543 22211 2334455555444 34 3445679983
No 70
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=28.78 E-value=4e+02 Score=28.78 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhccCcCCCCcccCCCCCCeeeEeecccccC
Q 038581 191 VGRYAVNYVRGLQDVEGHENATDLNSRPLKVSSCCKHYAAY 231 (792)
Q Consensus 191 v~~~a~a~v~G~Q~~~g~~~~~~~~~~~~~V~a~~KHFpg~ 231 (792)
++.+.+.||+-+.+. + ...+|++|-|.+||.
T Consensus 105 IAT~T~~~V~~~~~~-~---------~~~~I~~TRKT~Pg~ 135 (277)
T TIGR01334 105 VATYTHKMVTLAKKI-S---------PMAVVACTRKAIPLT 135 (277)
T ss_pred HHHHHHHHHHHHHhc-C---------CCCEEEecCCCCCCh
Confidence 578888999888764 2 124599999999983
No 71
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=28.27 E-value=1.2e+02 Score=31.64 Aligned_cols=51 Identities=6% Similarity=0.159 Sum_probs=33.4
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccc----cccCCCCEEEEEEEecc
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQR----VFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~~ 753 (792)
.++++|+|+++ ..--.||..+.+....... .|-= ..|+||++++++|-...
T Consensus 44 ~~sv~i~N~~~-~~p~LvQsWv~~~~~~~~~------pFivtPPlfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSA-SNVFLIQSWVANADGSRST------DFIITPPLFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCC-CccEEEEEEEecCCCCccC------CEEEcCCeEEECCCCceEEEEEECC
Confidence 57888999985 2236799999765432111 1221 25899999999986653
No 72
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=28.13 E-value=1.1e+02 Score=31.89 Aligned_cols=55 Identities=7% Similarity=0.144 Sum_probs=33.6
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccc-cccCCCCEEEEEEEec
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQR-VFVRAGRNKRIKFVFN 752 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~k-v~L~pGes~~V~~~l~ 752 (792)
.++++|+|+|+. .-.||..+.+.......+...+.-.=- ..|+||+++.+++-..
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 578888999985 689999987532110001101111112 3589999999997654
No 73
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=27.31 E-value=91 Score=30.19 Aligned_cols=25 Identities=12% Similarity=0.426 Sum_probs=21.9
Q ss_pred hhhccccccccCCCCEEEEEEEecc
Q 038581 729 KQVIGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 729 k~L~gF~kv~L~pGes~~V~~~l~~ 753 (792)
..|.+-+++.|.|||+++++++++.
T Consensus 80 ~~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 80 DDLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHHhhcceEEECCCCeeEeeeecCC
Confidence 4677888889999999999999986
No 74
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=27.27 E-value=48 Score=36.56 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=31.2
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhH----HHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQT----QLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.+|+||+..|... .++.+|.++- .... ++.+++.+.+++..|+++ .++|+|+
T Consensus 71 ~~~~~aDiVVitAG~~~---~~~~tr~~ll--~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv 130 (324)
T TIGR01758 71 VAFTDVDVAILVGAFPR---KEGMERRDLL--SKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANT 130 (324)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCcHHHHH--HHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHH
Confidence 46788999998888542 2344553321 2222 344555554323355444 4589987
No 75
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=27.04 E-value=1.5e+02 Score=27.97 Aligned_cols=18 Identities=6% Similarity=0.056 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCEEEEEEe
Q 038581 488 FAASEAAKTADATIILAG 505 (792)
Q Consensus 488 ~~a~~~a~~aD~vIv~vG 505 (792)
.++.+.++.+|++++++-
T Consensus 3 ~~~~~~i~~aD~vl~ViD 20 (141)
T cd01857 3 RQLWRVVERSDIVVQIVD 20 (141)
T ss_pred HHHHHHHhhCCEEEEEEE
Confidence 456778899999988874
No 76
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=26.81 E-value=1.4e+02 Score=34.81 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=37.8
Q ss_pred eEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhc-cccccccCCCCEEEEEEEecc
Q 038581 694 YFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVI-GFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 694 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~-gF~kv~L~pGes~~V~~~l~~ 753 (792)
.-++++.|+|+|...-+.+.-.|.. |. ...-|..+.. -+-.-.|.|||+..|+|++..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~-~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PT-SYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-Cc-ceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4589999999999877777666643 10 0011222222 122235899999999999987
No 77
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.35 E-value=53 Score=36.22 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=30.6
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhh--HHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQ--TQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q--~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.+|+||++.|... .++.+|.++.-.... .++.+++.+.++...++++. ++|+++
T Consensus 74 ~~l~~aDiVI~tAG~~~---~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 74 EAFKDVDVAILVGAMPR---KEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHhCCCCEEEEeCCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 45679999999888542 234455332111111 23344555443324554444 479976
No 78
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=26.10 E-value=40 Score=38.14 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=31.0
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhHHH----HHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQTQL----INQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~L----i~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.+|+||+..|... .+|.+|.++- ....++ .+++.+..++..| |++.++|+|+
T Consensus 116 ~~~kdaDIVVitAG~pr---kpg~tR~dll--~~N~~I~k~i~~~I~~~a~~~~i-viVVsNPvDv 175 (387)
T TIGR01757 116 EVFEDADWALLIGAKPR---GPGMERADLL--DINGQIFADQGKALNAVASKNCK-VLVVGNPCNT 175 (387)
T ss_pred HHhCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCCCeE-EEEcCCcHHH
Confidence 46789999999887542 3455664421 222233 3344442323344 3445689987
No 79
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=26.06 E-value=42 Score=38.67 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=31.7
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhH----HHHHHHHH-hcCCCEEEEEeCCceeecc
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQT----QLINQVAE-VAKGPVILVIMSAGGVDIA 554 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~-~~~kpvVvVl~~g~P~~l~ 554 (792)
+..+.||+||+..|... ++|.+|.++- .... +..+++.+ .++ ..++ ++.++|+|+.
T Consensus 172 e~~kdaDiVVitAG~pr---kpG~tR~dLl--~~N~~I~k~i~~~I~~~a~p-~~iv-IVVsNPvDv~ 232 (444)
T PLN00112 172 EVFQDAEWALLIGAKPR---GPGMERADLL--DINGQIFAEQGKALNEVASR-NVKV-IVVGNPCNTN 232 (444)
T ss_pred HHhCcCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhcCC-CeEE-EEcCCcHHHH
Confidence 46789999998887532 4566665432 1122 33445544 233 3443 4456899873
No 80
>PRK05086 malate dehydrogenase; Provisional
Probab=25.64 E-value=52 Score=36.03 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=32.3
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCCh---hhHHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPG---YQTQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~---~q~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.+|+||+++|... .++.+|.++- .. .-.++++++.+.+.+. + |++..+|+|+
T Consensus 65 ~~l~~~DiVIitaG~~~---~~~~~R~dll-~~N~~i~~~ii~~i~~~~~~~-i-vivvsNP~D~ 123 (312)
T PRK05086 65 PALEGADVVLISAGVAR---KPGMDRSDLF-NVNAGIVKNLVEKVAKTCPKA-C-IGIITNPVNT 123 (312)
T ss_pred HHcCCCCEEEEcCCCCC---CCCCCHHHHH-HHHHHHHHHHHHHHHHhCCCe-E-EEEccCchHH
Confidence 45578999999998643 2344454321 11 1235566666655543 3 3445679964
No 81
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.50 E-value=1.8e+02 Score=25.74 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=28.2
Q ss_pred HHHHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHHhcCCCEEE
Q 038581 490 ASEAAKTADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVIL 543 (792)
Q Consensus 490 a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVv 543 (792)
..+..+++|+||++++.- ...-...+++.++..++|++.
T Consensus 42 l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred HHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEE
Confidence 345678999999988632 234456788888888899764
No 82
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=25.09 E-value=64 Score=35.28 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=29.9
Q ss_pred HhhcCCEEEEEEecCCCcccccCCCCCCCCCh--hhHHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 493 AAKTADATIILAGLDLSVEAESLDREDLWLPG--YQTQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 493 ~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~--~q~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
..+.||++|+++|... .++.+|.++..-. .-.+.++++.+.+++ .++++ .++|+++
T Consensus 69 ~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~-~~viv-~~npvd~ 126 (309)
T cd05294 69 DVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAPD-TKILV-VTNPVDV 126 (309)
T ss_pred HhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEE-eCCchHH
Confidence 4789999999998643 3454554321000 012334445544444 33333 3579876
No 83
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=25.05 E-value=1.1e+03 Score=27.16 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=27.7
Q ss_pred hHhcCCcceeeeeccccCC-----cccccCHHHHHHhhhccc
Q 038581 264 CVKEGDASSVMCSYNRVNG-----IPSCADPKLLNQTVRGEW 300 (792)
Q Consensus 264 ai~~g~~~~vM~sy~~vng-----~pa~~s~~ll~~lLR~e~ 300 (792)
.|+++.+ ..|.+.+++.| ..++.++.+++.+|+.=+
T Consensus 50 ~iD~~l~-~~f~~P~S~TGEDvvEi~~HGg~~v~~~il~~l~ 90 (442)
T TIGR00450 50 CKDDELL-FKFVAPNSYTGEDVIEIQCHGSMLIVQEILQLCL 90 (442)
T ss_pred EeeeEEE-EEEcCCCCcccccEEEEECCCCHHHHHHHHHHHH
Confidence 4555655 88999999877 578999999998887543
No 84
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=25.02 E-value=4.6e+02 Score=23.35 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=39.8
Q ss_pred ceEEEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccccccCCCCEEEEEEEecc
Q 038581 693 DYFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 693 ~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~kv~L~pGes~~V~~~l~~ 753 (792)
+..++++.|+|+.+.+-.=-=.+|==|..+-...|. ...++.+.|.++|+.+|+..-+-
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 578999999999875433333333334544323333 57889999999999988876553
No 85
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=24.89 E-value=1.9e+02 Score=23.53 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=17.9
Q ss_pred ChhhHHHHHHHHHhc-CCCEEEEEe
Q 038581 523 PGYQTQLINQVAEVA-KGPVILVIM 546 (792)
Q Consensus 523 p~~q~~Li~~va~~~-~kpvVvVl~ 546 (792)
.++|..|.+++.... ++|+|+|++
T Consensus 31 ie~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 31 IEEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 367999999998776 689888775
No 86
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=24.30 E-value=57 Score=35.77 Aligned_cols=55 Identities=25% Similarity=0.426 Sum_probs=32.1
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhh----HHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQ----TQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.+|+||++.|... .+|.+|.++- ... .+.++++.+.+++ .+ +++..+|+|+
T Consensus 64 ~~~~daDivvitaG~~~---k~g~tR~dll--~~N~~i~~~i~~~i~~~~p~-a~-vivvtNPvDv 122 (310)
T cd01337 64 KALKGADVVVIPAGVPR---KPGMTRDDLF--NINAGIVRDLATAVAKACPK-AL-ILIISNPVNS 122 (310)
T ss_pred HhcCCCCEEEEeCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCC-eE-EEEccCchhh
Confidence 46789999999998543 3455564431 112 2344555555554 33 3445679976
No 87
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=24.01 E-value=55 Score=35.72 Aligned_cols=53 Identities=25% Similarity=0.449 Sum_probs=29.5
Q ss_pred hhcCCEEEEEEecCCCcccccCCCCCCCCChhhHH----HHHHHHHhcCCCEEEEEeCCceeec
Q 038581 494 AKTADATIILAGLDLSVEAESLDREDLWLPGYQTQ----LINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 494 a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~----Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
++.+|++|+++|... .++.+|.++ -....+ .++++.+.+++. ++ ++..+|+++
T Consensus 67 ~~~aDiVIitag~p~---~~~~sR~~l--~~~N~~iv~~i~~~I~~~~p~~-~i-Iv~tNP~di 123 (305)
T TIGR01763 67 TANSDIVVITAGLPR---KPGMSREDL--LSMNAGIVREVTGRIMEHSPNP-II-VVVSNPLDA 123 (305)
T ss_pred hCCCCEEEEcCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHCCCe-EE-EEecCcHHH
Confidence 578999999998643 234444332 122333 344555544443 33 334679887
No 88
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=23.76 E-value=91 Score=28.40 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=28.9
Q ss_pred CceEEEEEEEEecCCCCcce-eEEEeeeCCCCcchhhhhhh----ccccccccCCCCEEEEEEEecc
Q 038581 692 DDYFEFKVDFQNVGSTDGSD-VVIVYSKPPAEIAATYIKQV----IGFQRVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~e-VvQlYv~~~~~~~~~P~k~L----~gF~kv~L~pGes~~V~~~l~~ 753 (792)
...+.|+|+|+|+|+-+-.- ..+..+.+.....-.+.... ..+.-..|+||++.+..+-+..
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~v 101 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEV 101 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEE
T ss_pred CEEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEE
Confidence 34799999999998743321 11333434443322222111 1144457999999877665554
No 89
>PLN02602 lactate dehydrogenase
Probab=23.51 E-value=52 Score=36.68 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhh--HHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQ--TQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q--~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||+||++.|... .+|.+|.++-.-... .++++++.+.+++ .++++ ..+|+++
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dll~~N~~I~~~i~~~I~~~~p~-~iviv-vtNPvdv 159 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNLLQRNVALFRKIIPELAKYSPD-TILLI-VSNPVDV 159 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEE-ecCchHH
Confidence 34689999999888543 345566543211111 2344555555554 44433 3579976
No 90
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.20 E-value=3e+02 Score=30.00 Aligned_cols=58 Identities=29% Similarity=0.344 Sum_probs=32.8
Q ss_pred chHHHHHHHhh------cCCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHHhcCCCEEEEEeCCceeecc
Q 038581 485 NSIFAASEAAK------TADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAEVAKGPVILVIMSAGGVDIA 554 (792)
Q Consensus 485 ~~~~~a~~~a~------~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~~~~kpvVvVl~~g~P~~l~ 554 (792)
..+.++.+.+. ..|++|++=|. +...+|. +=+...+++++++ ++.|||.- .|-=.|.+
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGG--------Gs~eDL~-~FN~e~varai~~-~~~Pvisa--IGHe~D~t 121 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGG--------GSIEDLW-AFNDEEVARAIAA-SPIPVISA--IGHETDFT 121 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCC--------CChHHhc-ccChHHHHHHHHh-CCCCEEEe--cCCCCCch
Confidence 34555555543 47877766552 2222332 3357788999985 68897643 35444443
No 91
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=23.05 E-value=1.3e+02 Score=31.82 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=34.4
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhh----hcccccc-ccCCCCEEEEEEEec
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQ----VIGFQRV-FVRAGRNKRIKFVFN 752 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~----L~gF~kv-~L~pGes~~V~~~l~ 752 (792)
.++++|+|+|+. .-.||..+.+.... ..|.+. +.-.==+ .|+||+.+.|+|-..
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~-~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMN-TSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCC-CCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 477888999976 58999998653321 222211 2222223 589999999997654
No 92
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=22.99 E-value=1.5e+02 Score=30.93 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=34.1
Q ss_pred EEEEEEEecCCCCcceeEEEeeeCCCCcchhhhhhhccccc----cccCCCCEEEEEEEecc
Q 038581 696 EFKVDFQNVGSTDGSDVVIVYSKPPAEIAATYIKQVIGFQR----VFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 696 ~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~~P~k~L~gF~k----v~L~pGes~~V~~~l~~ 753 (792)
.++++|+|+|+. .-.||..+.+....... .-|-= ..|+||++++|+|-...
T Consensus 39 ~~si~i~N~~~~--p~LvQswv~~~~~~~~~-----~pFivtPPlfrl~p~~~q~lRI~~~~ 93 (229)
T PRK15211 39 NISFEVTNQADQ--TYGGQVWIDNTTQGSST-----VYMVPAPPFFKVRPKEKQIIRIMKTD 93 (229)
T ss_pred eEEEEEEeCCCC--cEEEEEEEecCCCCCcc-----CCEEEcCCeEEECCCCceEEEEEECC
Confidence 577888999986 48999999764321100 01322 25899999999986653
No 93
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=22.74 E-value=51 Score=35.88 Aligned_cols=55 Identities=25% Similarity=0.334 Sum_probs=31.9
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhh----HHHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQ----TQLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q----~~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||++|++.|... .+|.+|.++- ... .+..+++.+.+++ .+ +++.++|+++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dll--~~N~~i~~~~~~~i~~~~p~-~~-vivvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLELV--GRNVRIMKSIVPEVVKSGFD-GI-FLVATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCC-eE-EEEeCCHHHH
Confidence 45689999999888543 3455664431 112 2344555554443 44 4455689876
No 94
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.09 E-value=3.4e+02 Score=27.27 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=41.0
Q ss_pred CceEEEEEEEEecCCCCcceeEEEee-eCCCCcchhhhhhhccccc---cccCCCCEEEEEEEeccCCCeeEEeCC
Q 038581 692 DDYFEFKVDFQNVGSTDGSDVVIVYS-KPPAEIAATYIKQVIGFQR---VFVRAGRNKRIKFVFNACKSLNIVDYA 763 (792)
Q Consensus 692 ~~~~~v~v~VtNtG~~~G~eVvQlYv-~~~~~~~~~P~k~L~gF~k---v~L~pGes~~V~~~l~~~~~ls~~d~~ 763 (792)
++.++|+++|.|.|+-+--+|. |.= ++|...- .-..|=.. -+|+||++.+-++.+.+ +...+++-.
T Consensus 37 g~~v~V~~~iyN~G~~~A~dV~-l~D~~fp~~~F----~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~ 106 (181)
T PF05753_consen 37 GEDVTVTYTIYNVGSSAAYDVK-LTDDSFPPEDF----ELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFT 106 (181)
T ss_pred CcEEEEEEEEEECCCCeEEEEE-EECCCCCcccc----EeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEcc
Confidence 4579999999999987655543 332 2221110 11222111 25899999999999998 556665543
No 95
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=21.96 E-value=54 Score=33.98 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=40.0
Q ss_pred hHHhHhcCCcceeeeeccccCCccc-ccCHHHHHHhhhcccCCceEEEccchh
Q 038581 261 FEMCVKEGDASSVMCSYNRVNGIPS-CADPKLLNQTVRGEWDLHGYIVADCDS 312 (792)
Q Consensus 261 F~~ai~~g~~~~vM~sy~~vng~pa-~~s~~ll~~lLR~e~gf~G~VvSD~~~ 312 (792)
|+.|++...+ +||++||...|.|- +.....+|.-|.+-..+-|+.+=|-.-
T Consensus 158 ~k~Al~~nAa-avIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiI 209 (224)
T COG2003 158 FKEALKYNAA-AVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHII 209 (224)
T ss_pred HHHHHHhcch-hhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEE
Confidence 7789988755 99999999988543 345556788899999998887777543
No 96
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=21.59 E-value=1e+02 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCceEEEEEEEEecCCCC
Q 038581 691 CDDYFEFKVDFQNVGSTD 708 (792)
Q Consensus 691 ~~~~~~v~v~VtNtG~~~ 708 (792)
|++-+...|+|+|+|+.+
T Consensus 11 W~~Gf~~~v~v~N~~~~~ 28 (101)
T PF00553_consen 11 WGGGFQGEVTVTNNGSSP 28 (101)
T ss_dssp SSSEEEEEEEEEESSSST
T ss_pred cCCCeEEEEEEEECCCCc
Confidence 556789999999999865
No 97
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=21.50 E-value=1.4e+02 Score=20.77 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=21.8
Q ss_pred hhHHHHHhcCCCCHHHHHhHHHHHH
Q 038581 349 NFTGNAVQQGKVKETDIDKSLKYLY 373 (792)
Q Consensus 349 ~~l~~av~~G~i~~~~ld~av~RiL 373 (792)
..|.+...+|.|+++...+.-.+||
T Consensus 6 ~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4677889999999999999988886
No 98
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=21.20 E-value=71 Score=35.05 Aligned_cols=55 Identities=25% Similarity=0.290 Sum_probs=31.5
Q ss_pred HHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhH----HHHHHHHHhcCCCEEEEEeCCceeec
Q 038581 492 EAAKTADATIILAGLDLSVEAESLDREDLWLPGYQT----QLINQVAEVAKGPVILVIMSAGGVDI 553 (792)
Q Consensus 492 ~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~----~Li~~va~~~~kpvVvVl~~g~P~~l 553 (792)
+..+.||++|+..|... .+|.+|.++. .... +.++++.+.+++ .+ |++.++|.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dll--~~N~~i~~~i~~~i~~~~~~-~~-vivvsNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDLV--EKNLKIFKSIVGEVMASGFD-GI-FLVASNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHH--HHHHHHHHHHHHHHHHhCCC-eE-EEEccCcHHH
Confidence 45689999999888542 3455664431 1122 334455554444 33 3445689976
No 99
>PRK13556 azoreductase; Provisional
Probab=21.20 E-value=2.1e+02 Score=29.03 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=24.9
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHH
Q 038581 487 IFAASEAAKTADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAE 535 (792)
Q Consensus 487 ~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~ 535 (792)
.++..+..+.||++|++.-.. ++..|..=..+|+.+..
T Consensus 80 ~~~~~~~l~~AD~iVi~~P~y-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 80 ADKYLNQFLEADKVVFAFPLW-----------NFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHHHHHHHHCCEEEEecccc-----------ccCCcHHHHHHHHHHhc
Confidence 345567789999888765321 35567666667777764
No 100
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=20.70 E-value=4.5e+02 Score=34.48 Aligned_cols=62 Identities=10% Similarity=0.063 Sum_probs=37.3
Q ss_pred CCceEEEEEEEEecCCCCcceeEEEeeeCCCCc-c--------------hhhhhhhcccc--cc----ccCCCCEEEEEE
Q 038581 691 CDDYFEFKVDFQNVGSTDGSDVVIVYSKPPAEI-A--------------ATYIKQVIGFQ--RV----FVRAGRNKRIKF 749 (792)
Q Consensus 691 ~~~~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~-~--------------~~P~k~L~gF~--kv----~L~pGes~~V~~ 749 (792)
.++.-+++++++|+|+++=+. +++-+.+.... . -.-..+|.-+. |+ .|+|||+.+++|
T Consensus 797 eGE~~~~~ItL~N~S~~pvd~-l~~sf~DS~~~~~~~~l~~k~l~~~e~yelE~~l~~~~~~~i~~~~~I~Pg~~~~~~~ 875 (1185)
T PF08626_consen 797 EGEKQTFTITLRNTSSVPVDF-LSFSFQDSTIEPLQKALSNKDLSPDELYELEWQLFKLPAFRILNKPPIPPGESATFTV 875 (1185)
T ss_pred CCcEEEEEEEEEECCccccce-EEEEEEeccHHHHhhhhhcccCChhhhhhhhhhhhcCcceeecccCccCCCCEEEEEE
Confidence 356889999999999766555 33333332110 0 01112232222 11 789999999999
Q ss_pred Eecc
Q 038581 750 VFNA 753 (792)
Q Consensus 750 ~l~~ 753 (792)
.++.
T Consensus 876 ~~~~ 879 (1185)
T PF08626_consen 876 EVDG 879 (1185)
T ss_pred EecC
Confidence 9875
No 101
>PRK13555 azoreductase; Provisional
Probab=20.57 E-value=2e+02 Score=29.52 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=23.7
Q ss_pred HHHHHHHhhcCCEEEEEEecCCCcccccCCCCCCCCChhhHHHHHHHHH
Q 038581 487 IFAASEAAKTADATIILAGLDLSVEAESLDREDLWLPGYQTQLINQVAE 535 (792)
Q Consensus 487 ~~~a~~~a~~aD~vIv~vG~~~~~~~Eg~Dr~~l~Lp~~q~~Li~~va~ 535 (792)
..+..+..+.||.+|++.-.. ++.+|..=...|+.+..
T Consensus 80 ~~~~~~~~~~AD~lvi~~P~~-----------n~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13555 80 VDQYLNQFLEADKVVFAFPLW-----------NFTVPAPLITYISYLSQ 117 (208)
T ss_pred HHHHHHHHHHcCEEEEEcCcc-----------cccchHHHHHHHHHHhc
Confidence 345667789999887765211 34566665666666653
No 102
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.26 E-value=1.9e+02 Score=34.02 Aligned_cols=58 Identities=14% Similarity=0.371 Sum_probs=35.6
Q ss_pred eEEEEEEEEecCCCCcceeEEEeeeCCCCcch-------hhh----hhhc---ccc--ccccCCCCEEEEEEEecc
Q 038581 694 YFEFKVDFQNVGSTDGSDVVIVYSKPPAEIAA-------TYI----KQVI---GFQ--RVFVRAGRNKRIKFVFNA 753 (792)
Q Consensus 694 ~~~v~v~VtNtG~~~G~eVvQlYv~~~~~~~~-------~P~----k~L~---gF~--kv~L~pGes~~V~~~l~~ 753 (792)
....+++|+|+++.+ -.|.|+=+.|.+... .|. ...+ |.- ++.|+|||+++++|.+..
T Consensus 443 ~~~~~i~v~N~~~~~--v~v~v~d~~PvS~d~~i~V~~~~~~~~~~~~~~~~~G~~~W~l~L~pg~~~~l~~~y~v 516 (525)
T TIGR02231 443 EYAYRITLKNLRKEP--ERVQIEEQLPVSENEDIKVKLLSPTTPGYDEEDKKDGILEWKLTLKPGEKRDLKFKFKV 516 (525)
T ss_pred EEEEEEEEEcCCCCc--eEEEEEeeccCCCCCeeEEEEecCCCccccccccCCCeEEEEEEECCCCeEEEEEEEEE
Confidence 568899999998763 345555555654421 121 1111 222 456899999999888765
Done!