BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038586
         (353 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
           Inhibiting Protein), A Leucine Rich Repeat Protein
           Involved In Plant Defense
          Length = 313

 Score = 33.1 bits (74), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 30/138 (21%)

Query: 25  CIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCCK--WRGVCCNNTTSHFKVLNLRSS 82
           C  ++K+ALL  ++  +     LSSW    D   CC   W GV C+  T  ++V NL  S
Sbjct: 3   CNPQDKQALLQIKKD-LGNPTTLSSWLPTTD---CCNRTWLGVLCDTDTQTYRVNNLDLS 58

Query: 83  NDENARRKILKGTISSALLLCLNCMIYDIWTLVTINF---GGI-----PVPEFVGSLSKL 134
                +   +  ++++               L  +NF   GGI     P+P  +  L++L
Sbjct: 59  GLNLPKPYPIPSSLAN---------------LPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 135 SLNTVDHQGEIIHSVPEY 152
               + H   +  ++P++
Sbjct: 104 HYLYITHT-NVSGAIPDF 120


>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
 pdb|1I7O|B Chain B, Crystal Structure Of Hpce
 pdb|1I7O|C Chain C, Crystal Structure Of Hpce
 pdb|1I7O|D Chain D, Crystal Structure Of Hpce
 pdb|1GTT|A Chain A, Crystal Structure Of Hpce
 pdb|1GTT|B Chain B, Crystal Structure Of Hpce
 pdb|1GTT|C Chain C, Crystal Structure Of Hpce
 pdb|1GTT|D Chain D, Crystal Structure Of Hpce
          Length = 429

 Score = 28.1 bits (61), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 118 NFGGIPVPEFVGSLSKLSLNTVDHQGEIIHSVPEYPTLF 156
           +F  +P P   G+L  L LN  DH  E+    PE P +F
Sbjct: 214 SFPTLPHPH--GTLFALGLNYADHASELEFKPPEEPLVF 250


>pdb|3SHR|A Chain A, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
           Novel Site Of Interchain Communication
 pdb|3SHR|B Chain B, Crystal Structure Of Cgmp-Dependent Protein Kinase Reveals
           Novel Site Of Interchain Communication
          Length = 299

 Score = 28.1 bits (61), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 94  GTISSALLLCLNCM-IYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDHQGEIIHSVPEY 152
           G +   L +  NC     + TLV +    I    F   + +  L       E + SVP +
Sbjct: 106 GKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTF 165

Query: 153 PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCI 192
            +L   E  ++ L  +LE+  ++ G    +QGA  +   I
Sbjct: 166 QSL--PEEILSKLADVLEETHYENGEYIIRQGARGDTFFI 203


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,586,817
Number of Sequences: 62578
Number of extensions: 365482
Number of successful extensions: 878
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 14
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)