Query 038586
Match_columns 353
No_of_seqs 299 out of 2982
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:31:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-29 7.7E-34 268.4 21.0 275 26-341 27-328 (968)
2 PLN00113 leucine-rich repeat r 99.9 2.2E-21 4.9E-26 208.3 14.2 226 90-341 150-400 (968)
3 KOG0444 Cytoskeletal regulator 99.7 1E-18 2.3E-23 169.5 -2.4 219 90-330 88-346 (1255)
4 KOG0444 Cytoskeletal regulator 99.7 7.1E-18 1.5E-22 163.8 -1.9 214 73-316 104-372 (1255)
5 KOG4194 Membrane glycoprotein 99.6 4.4E-17 9.6E-22 157.2 3.1 224 90-331 207-464 (873)
6 PLN03150 hypothetical protein; 99.6 1.1E-15 2.3E-20 156.4 12.0 149 22-195 366-525 (623)
7 KOG0617 Ras suppressor protein 99.6 3.6E-18 7.8E-23 142.1 -5.7 126 73-237 34-162 (264)
8 KOG0617 Ras suppressor protein 99.6 4E-17 8.7E-22 135.9 -2.7 163 100-307 29-197 (264)
9 KOG4194 Membrane glycoprotein 99.6 2.7E-15 5.9E-20 145.0 5.5 220 71-316 124-375 (873)
10 KOG0472 Leucine-rich repeat pr 99.5 2.5E-16 5.5E-21 146.2 -4.2 207 73-311 69-302 (565)
11 PLN03210 Resistant to P. syrin 99.5 1.5E-13 3.2E-18 149.9 15.4 157 72-242 611-819 (1153)
12 KOG4237 Extracellular matrix p 99.5 8E-16 1.7E-20 142.6 -1.9 232 72-331 67-371 (498)
13 PRK15370 E3 ubiquitin-protein 99.5 8.6E-13 1.9E-17 136.4 15.4 176 90-298 188-384 (754)
14 PRK15387 E3 ubiquitin-protein 99.4 5.3E-13 1.1E-17 137.6 11.2 140 73-239 223-396 (788)
15 KOG0472 Leucine-rich repeat pr 99.4 1.2E-15 2.5E-20 141.9 -9.2 203 74-316 47-262 (565)
16 PLN03210 Resistant to P. syrin 99.4 4.3E-12 9.2E-17 138.5 14.4 208 73-313 590-876 (1153)
17 PRK15370 E3 ubiquitin-protein 99.4 1E-12 2.3E-17 135.8 8.8 176 90-298 209-405 (754)
18 PRK15387 E3 ubiquitin-protein 99.4 8.6E-12 1.9E-16 128.7 15.2 202 75-313 204-429 (788)
19 KOG0618 Serine/threonine phosp 99.3 1.6E-13 3.4E-18 139.0 -2.9 198 73-317 242-487 (1081)
20 KOG0618 Serine/threonine phosp 99.3 2.3E-12 5E-17 130.7 4.0 245 73-350 46-338 (1081)
21 cd00116 LRR_RI Leucine-rich re 99.1 7.8E-12 1.7E-16 117.3 -0.1 184 73-294 82-291 (319)
22 KOG0532 Leucine-rich repeat (L 99.1 8.9E-12 1.9E-16 120.7 -3.1 170 74-298 77-251 (722)
23 cd00116 LRR_RI Leucine-rich re 99.1 8.3E-12 1.8E-16 117.1 -3.5 180 98-315 75-287 (319)
24 KOG0532 Leucine-rich repeat (L 99.0 7.4E-12 1.6E-16 121.3 -6.6 162 110-316 78-244 (722)
25 PLN03150 hypothetical protein; 99.0 1E-09 2.2E-14 112.6 7.3 101 134-270 420-524 (623)
26 COG4886 Leucine-rich repeat (L 98.9 7.9E-10 1.7E-14 107.3 5.4 184 76-296 97-292 (394)
27 COG4886 Leucine-rich repeat (L 98.9 2E-09 4.4E-14 104.5 5.8 178 111-315 97-286 (394)
28 KOG4237 Extracellular matrix p 98.7 4.2E-09 9E-14 98.5 0.3 130 90-236 56-199 (498)
29 PF08263 LRRNT_2: Leucine rich 98.6 4.8E-08 1E-12 63.7 4.6 42 26-68 1-43 (43)
30 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 3.8E-13 86.5 2.4 39 276-314 108-148 (175)
31 PF14580 LRR_9: Leucine-rich r 98.6 2.7E-08 5.9E-13 85.3 2.3 106 105-239 19-127 (175)
32 KOG1259 Nischarin, modulator o 98.5 7E-08 1.5E-12 87.6 3.5 128 151-318 282-411 (490)
33 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.5E-13 92.6 -1.7 114 93-239 273-388 (490)
34 PF13855 LRR_8: Leucine rich r 98.3 3.9E-07 8.4E-12 64.1 2.9 57 106-165 2-61 (61)
35 KOG3207 Beta-tubulin folding c 98.3 1.3E-07 2.7E-12 89.8 0.4 166 102-298 119-318 (505)
36 PF13855 LRR_8: Leucine rich r 98.3 1.3E-06 2.7E-11 61.5 4.6 61 153-237 1-61 (61)
37 KOG4658 Apoptotic ATPase [Sign 98.2 1.5E-06 3.2E-11 92.0 4.5 207 73-298 546-789 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.1 7.6E-07 1.6E-11 94.1 0.6 104 105-236 545-653 (889)
39 KOG1909 Ran GTPase-activating 98.1 2.2E-07 4.7E-12 85.9 -3.1 188 105-327 92-319 (382)
40 KOG3207 Beta-tubulin folding c 98.0 1.7E-06 3.6E-11 82.3 0.1 163 105-293 146-338 (505)
41 KOG0531 Protein phosphatase 1, 97.9 1.8E-06 3.9E-11 84.6 -1.6 32 263-294 234-268 (414)
42 KOG0531 Protein phosphatase 1, 97.7 9.2E-06 2E-10 79.6 0.6 181 105-316 72-265 (414)
43 PRK15386 type III secretion pr 97.6 0.00025 5.5E-09 68.4 8.3 65 98-172 46-113 (426)
44 KOG4579 Leucine-rich repeat (L 97.5 6.4E-06 1.4E-10 66.9 -2.6 82 72-166 53-136 (177)
45 PF12799 LRR_4: Leucine Rich r 97.5 7.4E-05 1.6E-09 48.8 2.1 29 110-140 4-32 (44)
46 KOG2982 Uncharacterized conser 97.4 9.7E-05 2.1E-09 67.4 3.1 55 259-313 222-286 (418)
47 KOG4579 Leucine-rich repeat (L 97.4 1.2E-05 2.6E-10 65.3 -2.4 83 220-316 48-133 (177)
48 KOG1909 Ran GTPase-activating 97.3 4.3E-05 9.3E-10 71.0 -1.0 190 72-293 30-253 (382)
49 PF12799 LRR_4: Leucine Rich r 97.3 0.00022 4.7E-09 46.6 2.6 34 133-166 2-37 (44)
50 KOG1859 Leucine-rich repeat pr 97.1 1.5E-05 3.2E-10 80.3 -5.9 69 90-166 174-245 (1096)
51 KOG1859 Leucine-rich repeat pr 97.0 1.4E-05 3.1E-10 80.4 -7.3 150 97-293 102-266 (1096)
52 KOG2120 SCF ubiquitin ligase, 96.8 7.9E-05 1.7E-09 68.1 -3.8 58 222-291 310-373 (419)
53 KOG3665 ZYG-1-like serine/thre 96.6 0.00069 1.5E-08 70.3 0.9 134 105-272 122-261 (699)
54 KOG3665 ZYG-1-like serine/thre 96.5 0.00051 1.1E-08 71.2 -0.5 140 73-239 123-264 (699)
55 KOG2120 SCF ubiquitin ligase, 96.5 1.7E-05 3.7E-10 72.3 -10.4 55 259-314 311-371 (419)
56 COG5238 RNA1 Ran GTPase-activa 96.3 0.0033 7.2E-08 57.0 3.2 64 222-293 211-284 (388)
57 PRK15386 type III secretion pr 95.5 0.036 7.8E-07 53.8 6.6 53 130-195 50-104 (426)
58 COG5238 RNA1 Ran GTPase-activa 95.4 0.0042 9E-08 56.4 -0.0 62 225-293 185-254 (388)
59 KOG1644 U2-associated snRNP A' 95.2 0.018 3.9E-07 50.1 3.4 92 74-180 44-150 (233)
60 KOG1644 U2-associated snRNP A' 95.1 0.05 1.1E-06 47.4 5.7 22 149-170 60-81 (233)
61 PF00560 LRR_1: Leucine Rich R 94.9 0.0057 1.2E-07 33.4 -0.4 21 282-304 1-21 (22)
62 PF00560 LRR_1: Leucine Rich R 94.7 0.011 2.4E-07 32.2 0.4 20 110-131 3-22 (22)
63 KOG2739 Leucine-rich acidic nu 94.3 0.021 4.6E-07 51.4 1.5 17 222-238 113-129 (260)
64 PF13504 LRR_7: Leucine rich r 94.1 0.026 5.6E-07 28.7 1.0 17 281-297 1-17 (17)
65 KOG0473 Leucine-rich repeat pr 93.7 0.0034 7.3E-08 55.7 -4.6 82 71-166 41-124 (326)
66 KOG2982 Uncharacterized conser 92.8 0.032 6.9E-07 51.4 0.1 81 187-293 73-158 (418)
67 KOG2739 Leucine-rich acidic nu 91.7 0.15 3.2E-06 46.1 2.9 82 221-314 61-151 (260)
68 smart00369 LRR_TYP Leucine-ric 91.2 0.19 4.2E-06 28.3 2.1 19 280-298 1-19 (26)
69 smart00370 LRR Leucine-rich re 91.2 0.19 4.2E-06 28.3 2.1 19 280-298 1-19 (26)
70 KOG2123 Uncharacterized conser 89.7 0.049 1.1E-06 49.8 -1.9 79 222-314 38-125 (388)
71 PF13306 LRR_5: Leucine rich r 89.3 1.8 3.8E-05 34.3 7.1 14 128-141 31-44 (129)
72 smart00364 LRR_BAC Leucine-ric 85.0 0.62 1.3E-05 26.5 1.4 18 281-298 2-19 (26)
73 PF13306 LRR_5: Leucine rich r 84.8 3.6 7.8E-05 32.4 6.6 53 105-161 35-89 (129)
74 KOG2123 Uncharacterized conser 82.9 0.089 1.9E-06 48.1 -4.0 54 73-141 42-97 (388)
75 KOG0473 Leucine-rich repeat pr 76.1 0.058 1.2E-06 48.1 -7.2 72 95-172 32-106 (326)
76 smart00365 LRR_SD22 Leucine-ri 75.2 2.6 5.6E-05 24.0 1.8 19 280-298 1-19 (26)
77 PF13516 LRR_6: Leucine Rich r 72.4 2.3 5E-05 23.2 1.2 16 152-167 1-16 (24)
78 smart00368 LRR_RI Leucine rich 69.1 4.2 9.1E-05 23.3 1.8 14 281-294 2-15 (28)
79 TIGR00864 PCC polycystin catio 55.8 5 0.00011 47.6 0.9 44 287-331 1-44 (2740)
80 smart00367 LRR_CC Leucine-rich 22.0 66 0.0014 17.7 1.4 13 280-292 1-13 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=3.6e-29 Score=268.44 Aligned_cols=275 Identities=21% Similarity=0.274 Sum_probs=217.6
Q ss_pred cHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhh
Q 038586 26 IDEEKEALLTFEQSPVDEYGALSSWG-REDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCL 104 (353)
Q Consensus 26 ~~~e~~aLl~~k~~~~~~~~~~~~W~-~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~ 104 (353)
+++|+.||++||+++.+|...+.+|. +.| ||.|.||+|++ .++|+.|+|++ ++++|.+|+.+..+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~----~c~w~gv~c~~-~~~v~~L~L~~--------~~i~~~~~~~~~~l- 92 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSAD----VCLWQGITCNN-SSRVVSIDLSG--------KNISGKISSAIFRL- 92 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCC----CCcCcceecCC-CCcEEEEEecC--------CCccccCChHHhCC-
Confidence 66899999999999988877788994 455 99999999975 46999999999 99999999999999
Q ss_pred ccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCc
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQN 180 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~ 180 (353)
++| ++|+|++|++++. +|..+. .+++|++|+|++ .+.+|. +.+++|++|++++|.+.+.+|.. +
T Consensus 93 ~~L--~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~-------~ 160 (968)
T PLN00113 93 PYI--QTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND-------I 160 (968)
T ss_pred CCC--CEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH-------H
Confidence 999 9999999999987 888754 899999999998 666775 56889999999999998877765 5
Q ss_pred CCCCccccceeccCCcCCC-CCCC--CCCCcc-----ccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchh
Q 038586 181 GQQGAEAEAVCIQHNQAND-IPCS--SNNNVQ-----TVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDA 252 (353)
Q Consensus 181 ~~l~~~l~~l~l~~N~l~~-i~~~--~~~~l~-----~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~ 252 (353)
+.+.. ++++++++|++.. +|.. ....++ ...+.+.+|..++++++|++|++++|++++.+| ..++
T Consensus 161 ~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~-- 233 (968)
T PLN00113 161 GSFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIP----YEIG-- 233 (968)
T ss_pred hcCCC-CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCC----hhHh--
Confidence 55555 6667777665542 3321 122222 225667789999999999999999999998888 8888
Q ss_pred hhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccCC----Cc---c
Q 038586 253 AIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAEP----RD---E 320 (353)
Q Consensus 253 ~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~----~~---~ 320 (353)
++++|++|++++ +.+|..+..+++|++|++++|.+ +.+|. .+..+++|+.|+...+. .+ .
T Consensus 234 ------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 234 ------GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred ------cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch--hHhhccCcCEEECcCCeeccCCChhHc
Confidence 899999999987 67888999999999999999999 88998 88888899888764432 11 2
Q ss_pred ccccccccc--ccccccCCChHH
Q 038586 321 ECGKLQAVA--WEEEMGPLPVEF 341 (353)
Q Consensus 321 ~c~~l~~~~--~~~~~~~lp~~~ 341 (353)
.+.+++.+. .+.+.|.+|..+
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhH
Confidence 333444443 355667777554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.2e-21 Score=208.31 Aligned_cols=226 Identities=17% Similarity=0.165 Sum_probs=142.6
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
|.+.|.+|..+..+ ++| ++|++++|.+.+. +|..++++++|++|+|++ .+.+|..++++++|++|++++|++.
T Consensus 150 n~~~~~~p~~~~~l-~~L--~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 150 NMLSGEIPNDIGSF-SSL--KVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred CcccccCChHHhcC-CCC--CEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 55555555555555 555 6666665555555 555555555666665555 4455555555556666666655555
Q ss_pred eecCccccccCCCcCCCCccccceeccCCcCCC-CCCC--CCCCc-----cccceeeeCCcchhccCCCCEEEcccCcCc
Q 038586 167 QILEKDQHDEGSQNGQQGAEAEAVCIQHNQAND-IPCS--SNNNV-----QTVEFEGEMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 167 g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~-i~~~--~~~~l-----~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
+.+|.. ++.+.. ++++++++|++.. +|.. ....+ ....+.+.+|.++.++++|++|++++|++.
T Consensus 226 ~~~p~~-------l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 226 GEIPYE-------IGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCChh-------HhcCCC-CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 555543 344455 6677777776553 3321 11222 223566777888888888888888888888
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
+.+| ..++ ++++|+.|++++ +.+|..+..+++|+.|++++|.+ +.+|. .++.++.|+.|+.
T Consensus 298 ~~~p----~~~~--------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~L 363 (968)
T PLN00113 298 GEIP----ELVI--------QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDL 363 (968)
T ss_pred cCCC----hhHc--------CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEEC
Confidence 7777 6777 788888888877 66777888888888888888888 78888 7888888888876
Q ss_pred ccCCC----c---cccccccccc--ccccccCCChHH
Q 038586 314 IAEPR----D---EECGKLQAVA--WEEEMGPLPVEF 341 (353)
Q Consensus 314 ~~~~~----~---~~c~~l~~~~--~~~~~~~lp~~~ 341 (353)
..+.. + +.+..++.+. .+.+.+.+|..+
T Consensus 364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~ 400 (968)
T PLN00113 364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400 (968)
T ss_pred CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHH
Confidence 43321 1 1223344333 245566777654
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=1e-18 Score=169.46 Aligned_cols=219 Identities=16% Similarity=0.151 Sum_probs=127.0
Q ss_pred cCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC-CCCCCCCEEEccCccc
Q 038586 90 KILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV-PEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l-~~L~~L~~L~Ls~N~l 165 (353)
|++. .-||+.++++ ..| ++||||+|.+.. +|..+..-+++-.|+||+ +..||..+ -+|+.|-+||||+|++
T Consensus 88 N~LKnsGiP~diF~l-~dL--t~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRL-KDL--TILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred cccccCCCCchhccc-ccc--eeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh
Confidence 5552 3477777777 777 888888888777 677777777777777777 77777664 4777777778887777
Q ss_pred ceecCcc-------ccccCCCcC----------CCCccccceeccCCcCC--CCCCCC--CCCccccceee----eCCcc
Q 038586 166 VQILEKD-------QHDEGSQNG----------QQGAEAEAVCIQHNQAN--DIPCSS--NNNVQTVEFEG----EMEHS 220 (353)
Q Consensus 166 ~g~lp~~-------~~L~l~~~~----------~l~~~l~~l~l~~N~l~--~i~~~~--~~~l~~~~l~g----~~p~~ 220 (353)
. .+|.. ++|+|++|. .+++ ++.|.+++.|-+ .+|.+. ..++..+.++. .+|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmts-L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTS-LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchh-hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHH
Confidence 6 45433 333333331 1111 223333332211 222211 11222222221 34555
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC--CC
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI--DS 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l--~~ 295 (353)
+.++.+|+.|+||+|+|+. +. ...+ ...+|+.|+++. ..+|..+..|++|+.|++.+|++ .-
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~----~~~~--------~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LN----MTEG--------EWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred HhhhhhhheeccCcCceee-ee----ccHH--------HHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccC
Confidence 5566666666666666543 22 2334 555666666666 56677777777777777777777 66
Q ss_pred CCcccccccCcccchhcccc------CCCcccccccccccc
Q 038586 296 LPDRLVFDVREFLSELDQIA------EPRDEECGKLQAVAW 330 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~------~~~~~~c~~l~~~~~ 330 (353)
||+ .+|++..|+.+-... .-..+.|++++.+..
T Consensus 308 iPS--GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 308 IPS--GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred Ccc--chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcc
Confidence 777 677766666554322 234566777777654
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.65 E-value=7.1e-18 Score=163.78 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=148.1
Q ss_pred cEEEEEcCCCCC---------------ccccccCCcccccHHH-HHhhccccccEEEeecCCCCCCCCCcccCCCCCCcE
Q 038586 73 HFKVLNLRSSND---------------ENARRKILKGTISSAL-LLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSL 136 (353)
Q Consensus 73 ~v~~L~L~~~~~---------------~~~~~~~l~g~lp~~l-~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~ 136 (353)
.++.|||++|++ ...+.|++. +||.++ .+| +.| -.||||+|++.. +|+.+..+.+|++
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL-tDL--LfLDLS~NrLe~--LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL-TDL--LFLDLSNNRLEM--LPPQIRRLSMLQT 177 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhh-HhH--hhhccccchhhh--cCHHHHHHhhhhh
Confidence 466677777766 445557776 677544 466 777 788888888876 6766666666666
Q ss_pred EeccC----------------------------CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcccc
Q 038586 137 NTVDH----------------------------QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAE 188 (353)
Q Consensus 137 L~Ls~----------------------------~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~ 188 (353)
|+|++ ...+|.++..|.+|+.+|+|.|++. .+|.- ...+.. ++
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec-------ly~l~~-Lr 248 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC-------LYKLRN-LR 248 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH-------Hhhhhh-hh
Confidence 66655 2345666667777777777777765 33322 112222 34
Q ss_pred ceeccCCcCCCCCCCCC-------CCccccceeeeCCcchhccCCCCEEEcccCcCc-ccCCCCCccccchhhhhcccCC
Q 038586 189 AVCIQHNQANDIPCSSN-------NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLD-QILESERTEDHGDAAIQNKQQE 260 (353)
Q Consensus 189 ~l~l~~N~l~~i~~~~~-------~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~-g~~p~~~~~~~~~~~~~~~~~l 260 (353)
.|+|++|+++.+..... .++..++++ .+|+.++++++|+.|.+.+|+++ .-+| ..|| ++
T Consensus 249 rLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP----SGIG--------KL 315 (1255)
T KOG0444|consen 249 RLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP----SGIG--------KL 315 (1255)
T ss_pred eeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc----cchh--------hh
Confidence 44444444444432211 122222565 68899999999999999999875 2378 8899 99
Q ss_pred CccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 261 AVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 261 ~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
..|+.+..++ .-+|+.+..|..|+.|.|+.|.+-.+|+ .+.-++.|+.||...+
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPe--aIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPE--AIHLLPDLKVLDLREN 372 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechh--hhhhcCCcceeeccCC
Confidence 9999999888 7789999999999999999999999999 8888888988887654
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=4.4e-17 Score=157.24 Aligned_cols=224 Identities=12% Similarity=0.055 Sum_probs=143.5
Q ss_pred cCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCccc
Q 038586 90 KILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l 165 (353)
|+++ ++|. .|.+| ++| +.|||..|+|.-. ---.|.+|.+|+.|.|.. ...+-+ .|..|.++++|+|++|++
T Consensus 207 Nrit-tLp~r~Fk~L-~~L--~~LdLnrN~iriv-e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 207 NRIT-TLPQRSFKRL-PKL--ESLDLNRNRIRIV-EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred Cccc-ccCHHHhhhc-chh--hhhhccccceeee-hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 5555 4554 33446 666 6666666666542 122344555555554444 222222 245566666777777665
Q ss_pred ce-------ecCccccccCCCcC----------CCCccccceeccCCcCCCCCCCCC--------CCccccceeeeCCcc
Q 038586 166 VQ-------ILEKDQHDEGSQNG----------QQGAEAEAVCIQHNQANDIPCSSN--------NNVQTVEFEGEMEHS 220 (353)
Q Consensus 166 ~g-------~lp~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~i~~~~~--------~~l~~~~l~g~~p~~ 220 (353)
+. .+..+++|++|+|. .... +++|+|+.|+++.++.... .++..+++..--...
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk-L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK-LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccccchhhhhccchhhhheeecchhhhccc-ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 52 23445666666653 3344 7888888888887775432 122333333333445
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEccCCCCCC-
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVESEVEIDS- 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l~~- 295 (353)
|..+++|+.|||++|.+++.+.. ....+. .|++|+.|.+.+ ..||. .|..+.+|++|||.+|.|.+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IED-aa~~f~--------gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIED-AAVAFN--------GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEec-chhhhc--------cchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 67788899999999998887762 112233 799999999988 66774 68889999999999999944
Q ss_pred CCcccccccCcccchhccccCCCccccccccccccc
Q 038586 296 LPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
-|+ .|..+ .|++|-.-.....++|+-.|..+|-
T Consensus 432 q~n--AFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 432 QPN--AFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred ccc--ccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 466 78887 7888777667778899888888883
No 6
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=156.35 Aligned_cols=149 Identities=21% Similarity=0.246 Sum_probs=123.7
Q ss_pred cccCcHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc----cccceEecC--CC--CcEEEEEcCCCCCccccccCCc
Q 038586 22 IIRCIDEEKEALLTFEQSPVDEYGALSSWGREDDKRNCC----KWRGVCCNN--TT--SHFKVLNLRSSNDENARRKILK 93 (353)
Q Consensus 22 ~~~~~~~e~~aLl~~k~~~~~~~~~~~~W~~~~~~~~~C----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~l~ 93 (353)
...+.++|..||+++|+.+.++. ..+|.+.. || .|.||.|.. .. .+|+.|+|++ +.+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~--~~~W~g~~----C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------n~L~ 431 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL--RFGWNGDP----CVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------QGLR 431 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc--cCCCCCCC----CCCcccccccceeeccCCCCceEEEEEECCC--------CCcc
Confidence 45677889999999999997653 24796543 32 699999952 22 2599999999 9999
Q ss_pred ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecC
Q 038586 94 GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILE 170 (353)
Q Consensus 94 g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp 170 (353)
|.+|+++..+ ++| ++|+|++|.++|. +|..++.+++|+.|+|++ .+.+|..++++++|++|+|++|+++|.+|
T Consensus 432 g~ip~~i~~L-~~L--~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP 507 (623)
T PLN03150 432 GFIPNDISKL-RHL--QSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507 (623)
T ss_pred ccCCHHHhCC-CCC--CEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCC
Confidence 9999999999 999 9999999999998 999999999999999999 78999999999999999999999999999
Q ss_pred ccccccCCCcCCCCccccceeccCC
Q 038586 171 KDQHDEGSQNGQQGAEAEAVCIQHN 195 (353)
Q Consensus 171 ~~~~L~l~~~~~l~~~l~~l~l~~N 195 (353)
.. ++.....+..+++.+|
T Consensus 508 ~~-------l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 508 AA-------LGGRLLHRASFNFTDN 525 (623)
T ss_pred hH-------HhhccccCceEEecCC
Confidence 76 3322211345666666
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=3.6e-18 Score=142.11 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|.|++ |.++ .+|+.+..+ .+| ++|++++|.+.. +|..++.+++|+.|+++. ...+|..||
T Consensus 34 ~ITrLtLSH--------NKl~-~vppnia~l-~nl--evln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 34 NITRLTLSH--------NKLT-VVPPNIAEL-KNL--EVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhhhhhccc--------Ccee-ecCCcHHHh-hhh--hhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccC
Confidence 556666666 5555 556666666 666 666666666655 566666666666666655 555566666
Q ss_pred CCCCCCEEEccCcccce-ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 151 EYPTLFDVEGYMASLVQ-ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g-~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
.++.|+.|||.+|++.. .+|.. +-.+.. ++.+++++| +|. -+|..++++++|+.
T Consensus 100 s~p~levldltynnl~e~~lpgn-------ff~m~t-lralyl~dn----------------dfe-~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGN-------FFYMTT-LRALYLGDN----------------DFE-ILPPDVGKLTNLQI 154 (264)
T ss_pred CCchhhhhhccccccccccCCcc-------hhHHHH-HHHHHhcCC----------------Ccc-cCChhhhhhcceeE
Confidence 66666666666666543 34443 333333 555555555 443 34555555555555
Q ss_pred EEcccCcC
Q 038586 230 VERYSSSL 237 (353)
Q Consensus 230 L~Ls~N~l 237 (353)
|.+.+|.+
T Consensus 155 l~lrdndl 162 (264)
T KOG0617|consen 155 LSLRDNDL 162 (264)
T ss_pred EeeccCch
Confidence 55555554
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=4e-17 Score=135.88 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=146.6
Q ss_pred HHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccC
Q 038586 100 LLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEG 177 (353)
Q Consensus 100 l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l 177 (353)
++++ .++ +.|.||+|.++. +|+.+..+.+|+.|++++ ...+|.++..+++|++|+++.|++. .+|..
T Consensus 29 Lf~~-s~I--TrLtLSHNKl~~--vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprg----- 97 (264)
T KOG0617|consen 29 LFNM-SNI--TRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRG----- 97 (264)
T ss_pred ccch-hhh--hhhhcccCceee--cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccc-----
Confidence 5667 888 999999999998 799999999999999999 8999999999999999999999988 88888
Q ss_pred CCcCCCCccccceeccCCcCCCCCCCCCCCcccccee-eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhc
Q 038586 178 SQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQN 256 (353)
Q Consensus 178 ~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~ 256 (353)
++.... ++.+++..| .+. ..+|..|..++-|+.|++++|.|. .+| .++|
T Consensus 98 --fgs~p~-levldltyn----------------nl~e~~lpgnff~m~tlralyl~dndfe-~lp----~dvg------ 147 (264)
T KOG0617|consen 98 --FGSFPA-LEVLDLTYN----------------NLNENSLPGNFFYMTTLRALYLGDNDFE-ILP----PDVG------ 147 (264)
T ss_pred --cCCCch-hhhhhcccc----------------ccccccCCcchhHHHHHHHHHhcCCCcc-cCC----hhhh------
Confidence 888888 899999988 554 357888999999999999999995 678 8999
Q ss_pred ccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcc
Q 038586 257 KQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREF 307 (353)
Q Consensus 257 ~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~ 307 (353)
++++|+.|.+.+ -.+|.+++.+..|++|.+.+|.+..+|+ .++++..
T Consensus 148 --~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlpp--el~~l~l 197 (264)
T KOG0617|consen 148 --KLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPP--ELANLDL 197 (264)
T ss_pred --hhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecCh--hhhhhhh
Confidence 999999999998 6789999999999999999999999999 6665543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.56 E-value=2.7e-15 Score=145.02 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=151.9
Q ss_pred CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-C
Q 038586 71 TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-H 147 (353)
Q Consensus 71 ~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~ 147 (353)
+||++.|+|.+ |.++..-.+++..+ +.| +.||||.|.|+..+ -..|..-.++++|+|++ ++.+- .
T Consensus 124 sghl~~L~L~~--------N~I~sv~se~L~~l-~al--rslDLSrN~is~i~-~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 124 SGHLEKLDLRH--------NLISSVTSEELSAL-PAL--RSLDLSRNLISEIP-KPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred ccceeEEeeec--------cccccccHHHHHhH-hhh--hhhhhhhchhhccc-CCCCCCCCCceEEeeccccccccccc
Confidence 57899999999 88875555678888 999 99999999999852 23466777899999988 55443 4
Q ss_pred CCCCCCCCCEEEccCcccce-------ecCccccccCCCc----------CCCCccccceeccCCcCCCCCCC-------
Q 038586 148 SVPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQN----------GQQGAEAEAVCIQHNQANDIPCS------- 203 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~----------~~l~~~l~~l~l~~N~l~~i~~~------- 203 (353)
.|..+.+|.+|.|++|+++. .+|.++.|+|..| ..+.+ ++.+.+..|.+..+...
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S-l~nlklqrN~I~kL~DG~Fy~l~k 270 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS-LQNLKLQRNDISKLDDGAFYGLEK 270 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh-hhhhhhhhcCcccccCcceeeecc
Confidence 57788888999999998873 2455555555443 23334 55566666655443311
Q ss_pred -CCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCc-hhhc
Q 038586 204 -SNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDP-IELL 278 (353)
Q Consensus 204 -~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP-~~l~ 278 (353)
...++.++++...--.++.+|+.|+.|++|+|.|..+.+ ..+. -+.+|++|+|+. ..++ .++.
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~----d~Ws--------ftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI----DSWS--------FTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeec----chhh--------hcccceeEeccccccccCChhHHH
Confidence 112334444544445566777888888888888877666 6666 677888888887 3443 4577
Q ss_pred CCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 279 CLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
.|+.|++|+|++|.++.+-+. .|..+++|+.||...+
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~-af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEG-AFVGLSSLHKLDLRSN 375 (873)
T ss_pred HHHHhhhhcccccchHHHHhh-HHHHhhhhhhhcCcCC
Confidence 778888888888888777663 6777888888876443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=2.5e-16 Score=146.23 Aligned_cols=207 Identities=15% Similarity=0.139 Sum_probs=141.3
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
.++.+++.+ |.++ ++|++++.+ ..+ +.++.++|+++. +|+.++.+.+|+.|+.++ ..++|++++
T Consensus 69 ~l~vl~~~~--------n~l~-~lp~aig~l-~~l--~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 69 CLTVLNVHD--------NKLS-QLPAAIGEL-EAL--KSLNVSHNKLSE--LPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred ceeEEEecc--------chhh-hCCHHHHHH-HHH--HHhhcccchHhh--ccHHHhhhhhhhhhhccccceeecCchHH
Confidence 467888888 8887 899999999 999 999999999988 799999999999999988 788899999
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC--Ccccc----ceeeeCCcchhcc
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN--NVQTV----EFEGEMEHSLSEV 224 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~--~l~~~----~l~g~~p~~l~~l 224 (353)
.+-.|+.++..+|+++ ++|.. ...+.. +..+++.+|.+..+|..... .++.+ .+-+++|+.++.+
T Consensus 135 ~~~~l~dl~~~~N~i~-slp~~-------~~~~~~-l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l 205 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS-SLPED-------MVNLSK-LSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGL 205 (565)
T ss_pred HHhhhhhhhccccccc-cCchH-------HHHHHH-HHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcch
Confidence 9999999999999987 66665 444444 55566666666555432111 11111 2345889999999
Q ss_pred CCCCEEEcccCcCcccCCCCCccccc-h---------------hhhhcccCCCccceeecCC---CCCchhhcCCCCCCE
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHG-D---------------AAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILE 285 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~-~---------------~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~ 285 (353)
.+|..|++..|++.. +| +|+ - .+.+..+.+.++..|++++ ..+|.++..+.+|.+
T Consensus 206 ~~L~~LyL~~Nki~~-lP-----ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRF-LP-----EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred hhhHHHHhhhccccc-CC-----CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 999999999999863 55 333 0 0112223445555555554 445555555555555
Q ss_pred EEccCCCCCCCCcccccccCcccchh
Q 038586 286 IVESEVEIDSLPDRLVFDVREFLSEL 311 (353)
Q Consensus 286 L~Ls~N~l~~iP~~~~~~~l~~L~~L 311 (353)
||+|+|.++.+|. .++++ .|+.|
T Consensus 280 LDlSNN~is~Lp~--sLgnl-hL~~L 302 (565)
T KOG0472|consen 280 LDLSNNDISSLPY--SLGNL-HLKFL 302 (565)
T ss_pred hcccCCccccCCc--ccccc-eeeeh
Confidence 5555555555555 55555 44443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.52 E-value=1.5e-13 Score=149.86 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=106.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.+++.|++.+ +.+. .++..+..+ ++| ++|+|+++...+. +|. ++.+++|++|+|++ ...+|..
T Consensus 611 ~~L~~L~L~~--------s~l~-~L~~~~~~l-~~L--k~L~Ls~~~~l~~-ip~-ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 611 ENLVKLQMQG--------SKLE-KLWDGVHSL-TGL--RNIDLRGSKNLKE-IPD-LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred cCCcEEECcC--------cccc-ccccccccC-CCC--CEEECCCCCCcCc-CCc-cccCCcccEEEecCCCCccccchh
Confidence 4678888888 6765 677767777 888 8888887654444 664 67788888888877 6677888
Q ss_pred CCCCCCCCEEEccCcccceecC------ccccccCCCcCCCCc------cccceeccCCcCCCCCCCC-C----------
Q 038586 149 VPEYPTLFDVEGYMASLVQILE------KDQHDEGSQNGQQGA------EAEAVCIQHNQANDIPCSS-N---------- 205 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp------~~~~L~l~~~~~l~~------~l~~l~l~~N~l~~i~~~~-~---------- 205 (353)
++++++|++|++++|...+.+| .+++|+++++..+.. .++.+++++|.+..+|... .
T Consensus 677 i~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~ 756 (1153)
T PLN03210 677 IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCE 756 (1153)
T ss_pred hhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccc
Confidence 8888888888888765433443 456666766543322 1567788888777666321 0
Q ss_pred ---------------------CCccccce-----eeeCCcchhccCCCCEEEcccCcCcccCC
Q 038586 206 ---------------------NNVQTVEF-----EGEMEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 206 ---------------------~~l~~~~l-----~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
..++.+.+ .+.+|.+++++++|+.|++++|..-+.+|
T Consensus 757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 12222333 23478888899999999998876545566
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=8e-16 Score=142.64 Aligned_cols=232 Identities=13% Similarity=0.097 Sum_probs=159.3
Q ss_pred CcEEEEEcCCCCCccccccCCccccc-HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTIS-SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp-~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~ 147 (353)
...++|+|.. |.++ .|| .+|..+ ++| ++||||+|.|+.+ -|+.|.++.+|..|-+.+ +..+|.
T Consensus 67 ~~tveirLdq--------N~I~-~iP~~aF~~l-~~L--RrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 67 PETVEIRLDQ--------NQIS-SIPPGAFKTL-HRL--RRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcceEEEecc--------CCcc-cCChhhccch-hhh--ceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3578999999 9998 566 478888 999 9999999999998 899999999988776655 666775
Q ss_pred C-CCCCCCCCEEEccCcccce-------ecCccccccCCCc----------CCCCccccceeccCCc-------------
Q 038586 148 S-VPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQN----------GQQGAEAEAVCIQHNQ------------- 196 (353)
Q Consensus 148 ~-l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~----------~~l~~~l~~l~l~~N~------------- 196 (353)
. |++|..|+.|.+.-|++.- .+|.+..|.+-.+ ..+.. .+.+.+..|.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-IKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc-cchHhhhcCccccccccchhhhH
Confidence 3 5666666666665555431 2222222222111 11111 2223333332
Q ss_pred -----------------------CCCCC-----CCCCC---Cc-cccceeeeCC-cchhccCCCCEEEcccCcCcccCCC
Q 038586 197 -----------------------ANDIP-----CSSNN---NV-QTVEFEGEME-HSLSEVYDIFDVERYSSSLDQILES 243 (353)
Q Consensus 197 -----------------------l~~i~-----~~~~~---~l-~~~~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~ 243 (353)
+..++ ++... .+ ......+..| ..|..+++|+.|+|++|+++++-+
T Consensus 213 ~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~- 291 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED- 291 (498)
T ss_pred HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh-
Confidence 11111 00000 00 0001112223 347789999999999999999888
Q ss_pred CCccccchhhhhcccCCCccceeecCCCCC---c-hhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccCCC
Q 038586 244 ERTEDHGDAAIQNKQQEAVEEEALLAQQND---P-IELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAEPR 318 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i---P-~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~~ 318 (353)
.+|. +...+++|+|....+ . ..|..++.|+.|+|.+|+| .-.|. .|..+..|..|..+.++.
T Consensus 292 ---~aFe--------~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~--aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 292 ---GAFE--------GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG--AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ---hhhc--------chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc--cccccceeeeeehccCcc
Confidence 8888 999999999998333 2 3467899999999999999 45566 899999999999999999
Q ss_pred ccccccccccccc
Q 038586 319 DEECGKLQAVAWE 331 (353)
Q Consensus 319 ~~~c~~l~~~~~~ 331 (353)
.++|.-.|-..|-
T Consensus 359 ~CnC~l~wl~~Wl 371 (498)
T KOG4237|consen 359 NCNCRLAWLGEWL 371 (498)
T ss_pred cCccchHHHHHHH
Confidence 9999988888884
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=8.6e-13 Score=136.40 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=89.9
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
++++ .+|..+ . ++| +.|+|++|.++. +|..+. ++|++|++++ ...+|..+. .+|+.|++++|++.
T Consensus 188 ~~Lt-sLP~~I--p-~~L--~~L~Ls~N~Lts--LP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 188 LGLT-TIPACI--P-EQI--TTLILDNNELKS--LPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred CCcC-cCCccc--c-cCC--cEEEecCCCCCc--CChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-
Confidence 4554 455433 2 456 777777777775 565543 4677777766 445555443 35666666666655
Q ss_pred ecC-----ccccccCCCcCCCC------ccccceeccCCcCCCCCCCCCCCccc-----cceeeeCCcchhccCCCCEEE
Q 038586 168 ILE-----KDQHDEGSQNGQQG------AEAEAVCIQHNQANDIPCSSNNNVQT-----VEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 168 ~lp-----~~~~L~l~~~~~l~------~~l~~l~l~~N~l~~i~~~~~~~l~~-----~~l~g~~p~~l~~l~~L~~L~ 231 (353)
.+| .++.|+++.|.... ..++.|++++|+++.+|......++. +.++ .+|..+. ++|++|+
T Consensus 255 ~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~ 331 (754)
T PRK15370 255 ELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETLP--PGLKTLE 331 (754)
T ss_pred cCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCcccc--ccceecc
Confidence 333 24455555442211 11556666666666555322211221 2222 1333221 3566666
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|.+++ +| ..+. ++|+.|++++ ..+|..+. ++|+.|++++|+|..+|+
T Consensus 332 Ls~N~Lt~-LP----~~l~----------~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 332 AGENALTS-LP----ASLP----------PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred ccCCcccc-CC----hhhc----------CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCH
Confidence 66666654 44 2222 3566666665 34454432 456666666666655555
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=5.3e-13 Score=137.58 Aligned_cols=140 Identities=10% Similarity=0.047 Sum_probs=76.6
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-----------
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH----------- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~----------- 141 (353)
+++.|++.+ |+++ .+|.. + +.| ++|++++|+++. +|... ++|+.|++++
T Consensus 223 ~L~~L~L~~--------N~Lt-~LP~l---p-~~L--k~LdLs~N~Lts--LP~lp---~sL~~L~Ls~N~L~~Lp~lp~ 282 (788)
T PRK15387 223 HITTLVIPD--------NNLT-SLPAL---P-PEL--RTLEVSGNQLTS--LPVLP---PGLLELSIFSNPLTHLPALPS 282 (788)
T ss_pred CCCEEEccC--------CcCC-CCCCC---C-CCC--cEEEecCCccCc--ccCcc---cccceeeccCCchhhhhhchh
Confidence 567777777 6666 45542 3 666 777777777776 55432 3444444443
Q ss_pred -----------CCCCCCCCCCCCCCCEEEccCccccee--cC-ccccccCCCcCCCC-----ccccceeccCCcCCCCCC
Q 038586 142 -----------QGEIIHSVPEYPTLFDVEGYMASLVQI--LE-KDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPC 202 (353)
Q Consensus 142 -----------~~~lP~~l~~L~~L~~L~Ls~N~l~g~--lp-~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~ 202 (353)
...+|. .+++|++|++++|++++. +| .++.|++++|.... ..++.|++++|+++.+|.
T Consensus 283 ~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT 359 (788)
T ss_pred hcCEEECcCCccccccc---cccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence 333332 125677788887777741 11 34556666554321 126777888888777663
Q ss_pred CCC----CCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 203 SSN----NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 203 ~~~----~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
... ..+..++++ .+|.. ..+|+.|++++|+|++
T Consensus 360 lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 360 LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS 396 (788)
T ss_pred CCcccceehhhccccc-cCccc---ccccceEEecCCcccC
Confidence 210 111222333 24432 2356677777776664
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.41 E-value=1.2e-15 Score=141.88 Aligned_cols=203 Identities=18% Similarity=0.193 Sum_probs=145.4
Q ss_pred EEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCC
Q 038586 74 FKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPE 151 (353)
Q Consensus 74 v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~ 151 (353)
+..+.+++ |.+. .+.+.+.++ ..| .+|++++|.+.. .|++++.+..++.|+.++ ...+|++++.
T Consensus 47 l~~lils~--------N~l~-~l~~dl~nL-~~l--~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls~lp~~i~s 112 (565)
T KOG0472|consen 47 LQKLILSH--------NDLE-VLREDLKNL-ACL--TVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLSELPEQIGS 112 (565)
T ss_pred hhhhhhcc--------Cchh-hccHhhhcc-cce--eEEEeccchhhh--CCHHHHHHHHHHHhhcccchHhhccHHHhh
Confidence 46678888 7876 667778999 999 999999999998 799999999999999999 8899999999
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCC-------CCccccceeeeCCcchhcc
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN-------NNVQTVEFEGEMEHSLSEV 224 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~-------~~l~~~~l~g~~p~~l~~l 224 (353)
+.+|+.++.++|.+. .+|.. ++.+.. ++.++..+|+++.+|.... ..+...+++ ..|+..-++
T Consensus 113 ~~~l~~l~~s~n~~~-el~~~-------i~~~~~-l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m 182 (565)
T KOG0472|consen 113 LISLVKLDCSSNELK-ELPDS-------IGRLLD-LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAM 182 (565)
T ss_pred hhhhhhhhcccccee-ecCch-------HHHHhh-hhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHH
Confidence 999999999999998 67766 666666 7888889996666553221 122222333 233333346
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLV 301 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~ 301 (353)
+.|++||...|-+. .+| +.+| .|.+|+.||+.+ ..+| +|..++.|++|.++.|++..+|. .
T Consensus 183 ~~L~~ld~~~N~L~-tlP----~~lg--------~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpa--e 246 (565)
T KOG0472|consen 183 KRLKHLDCNSNLLE-TLP----PELG--------GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPA--E 246 (565)
T ss_pred HHHHhcccchhhhh-cCC----hhhc--------chhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHH--H
Confidence 66666666666553 455 5666 666666666666 4445 56666666666666666666666 3
Q ss_pred c-ccCcccchhccccC
Q 038586 302 F-DVREFLSELDQIAE 316 (353)
Q Consensus 302 ~-~~l~~L~~Ld~~~~ 316 (353)
. ..++.+..||..++
T Consensus 247 ~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDN 262 (565)
T ss_pred Hhcccccceeeecccc
Confidence 3 35666666665443
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=4.3e-12 Score=138.52 Aligned_cols=208 Identities=15% Similarity=0.052 Sum_probs=138.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
.++.|++.+ +.+. .+|..+ .. .+| ++|++++|.+.. +|..+..+++|++|+|++ .+.+|. +
T Consensus 590 ~Lr~L~~~~--------~~l~-~lP~~f-~~-~~L--~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l 653 (1153)
T PLN03210 590 KLRLLRWDK--------YPLR-CMPSNF-RP-ENL--VKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-L 653 (1153)
T ss_pred ccEEEEecC--------CCCC-CCCCcC-Cc-cCC--cEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-c
Confidence 577888888 6665 788766 56 899 999999999987 788899999999999997 667774 8
Q ss_pred CCCCCCCEEEccCcccceec-------CccccccCCCcCCC---------CccccceeccCCc-CCCCCCCCCCCccccc
Q 038586 150 PEYPTLFDVEGYMASLVQIL-------EKDQHDEGSQNGQQ---------GAEAEAVCIQHNQ-ANDIPCSSNNNVQTVE 212 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~l-------p~~~~L~l~~~~~l---------~~~l~~l~l~~N~-l~~i~~~~~~~l~~~~ 212 (353)
+.+++|++|++++|.....+ +.++.|+++++..+ .. ++.+.+++|. +..+|.. ..+++.+.
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s-L~~L~Lsgc~~L~~~p~~-~~nL~~L~ 731 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS-LYRLNLSGCSRLKSFPDI-STNISWLD 731 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC-CCEEeCCCCCCccccccc-cCCcCeee
Confidence 89999999999998754444 45677777765332 23 5566777663 3334321 11222222
Q ss_pred eee----eCCcch------------------------------hccCCCCEEEcccCcCcccCCCCCccccchhhhhccc
Q 038586 213 FEG----EMEHSL------------------------------SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQ 258 (353)
Q Consensus 213 l~g----~~p~~l------------------------------~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 258 (353)
+.+ .+|..+ ...++|+.|++++|...+.+| ..++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP----~si~-------- 799 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP----SSIQ-------- 799 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC----hhhh--------
Confidence 221 233321 112467778888887777778 6777
Q ss_pred CCCccceeecCC----CCCchhhcCC---------------------CCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQ----QNDPIELLCL---------------------DNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~----~~iP~~l~~l---------------------~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++++|+.|++++ +.+|..+ .+ .+|++|+|++|.+..+|. .+..++.|+.|+.
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~--si~~l~~L~~L~L 876 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPW--WIEKFSNLSFLDM 876 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChH--HHhcCCCCCEEEC
Confidence 777777777765 4455432 22 345666666666666777 6667777776653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1e-12 Score=135.78 Aligned_cols=176 Identities=13% Similarity=0.149 Sum_probs=120.9
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
|.++ .+|..+ . .+| ++|++++|.++. +|..+. .+|+.|+|++ ...+|..+. ++|++|++++|+++.
T Consensus 209 N~Lt-sLP~~l--~-~nL--~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~ 276 (754)
T PRK15370 209 NELK-SLPENL--Q-GNI--KTLYANSNQLTS--IPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISC 276 (754)
T ss_pred CCCC-cCChhh--c-cCC--CEEECCCCcccc--CChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCc
Confidence 7777 677654 3 677 888999888886 676553 4688888887 667776654 478888888887763
Q ss_pred ecC-----ccccccCCCcCCCC------ccccceeccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEE
Q 038586 168 ILE-----KDQHDEGSQNGQQG------AEAEAVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 168 ~lp-----~~~~L~l~~~~~l~------~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~ 231 (353)
+| .+++|++++|.... ..++.+++++|+++.+|......++.+ .++ .+|..+. ++|+.|+
T Consensus 277 -LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~ 352 (754)
T PRK15370 277 -LPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLD 352 (754)
T ss_pred -cccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEE
Confidence 33 45777777764322 125677888898888775444444433 333 3565553 6899999
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|+|+. +| ..+. +.|+.|++++ ..+|..+. .+|+.|++++|++..+|.
T Consensus 353 Ls~N~L~~-LP----~~lp----------~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 353 VSKNQITV-LP----ETLP----------PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPE 405 (754)
T ss_pred CCCCCCCc-CC----hhhc----------CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCch
Confidence 99999874 66 4333 4788888888 56776654 368888888888877776
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=8.6e-12 Score=128.70 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=128.8
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEY 152 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L 152 (353)
..|+++. ++++ .+|+.+. .+| +.|++++|+++. +|.. +++|++|++++ ...+|.. .
T Consensus 204 ~~LdLs~--------~~Lt-sLP~~l~---~~L--~~L~L~~N~Lt~--LP~l---p~~Lk~LdLs~N~LtsLP~l---p 261 (788)
T PRK15387 204 AVLNVGE--------SGLT-TLPDCLP---AHI--TTLVIPDNNLTS--LPAL---PPELRTLEVSGNQLTSLPVL---P 261 (788)
T ss_pred cEEEcCC--------CCCC-cCCcchh---cCC--CEEEccCCcCCC--CCCC---CCCCcEEEecCCccCcccCc---c
Confidence 4689999 8998 7998763 678 999999999998 7753 58999999999 6677753 3
Q ss_pred CCCCEEEccCcccce---ecCccccccCCCcCCCC-----ccccceeccCCcCCCCCCCCCCCcccc-----ceeeeCCc
Q 038586 153 PTLFDVEGYMASLVQ---ILEKDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEH 219 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g---~lp~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~ 219 (353)
++|+.|++++|.++. ..+.++.|++++|.... ..++.|++++|+++.+|.. ...++.+ .++ .+|.
T Consensus 262 ~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~l-p~~L~~L~Ls~N~L~-~LP~ 339 (788)
T PRK15387 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLT-SLPT 339 (788)
T ss_pred cccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCccccCCCC-cccccccccccCccc-cccc
Confidence 678889999998773 12245667777764432 1278888999988887642 1122222 333 2442
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchh-----hhhcc-cCCCccceeecCC---CCCchhhcCCCCCCEEEccC
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDA-----AIQNK-QQEAVEEEALLAQ---QNDPIELLCLDNILEIVESE 290 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~-----~~~~~-~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~ 290 (353)
. ..+|++|++++|+|++ +|... ..+... .+... .....|+.|++++ ..+|.. .++|+.|++++
T Consensus 340 l---p~~Lq~LdLS~N~Ls~-LP~lp-~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~ 411 (788)
T PRK15387 340 L---PSGLQELSVSDNQLAS-LPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---PSELKELMVSG 411 (788)
T ss_pred c---ccccceEecCCCccCC-CCCCC-cccceehhhccccccCcccccccceEEecCCcccCCCCc---ccCCCEEEccC
Confidence 1 1468899999998876 34100 111100 00000 0223577777777 445543 25688888888
Q ss_pred CCCCCCCcccccccCcccchhcc
Q 038586 291 VEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 291 N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
|+|..+|. .+. .|+.|+.
T Consensus 412 N~LssIP~--l~~---~L~~L~L 429 (788)
T PRK15387 412 NRLTSLPM--LPS---GLLSLSV 429 (788)
T ss_pred CcCCCCCc--chh---hhhhhhh
Confidence 88877877 433 3445554
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.29 E-value=1.6e-13 Score=139.03 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=118.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
.++.+|++. ++++ .+|+.+..+ .+| +.++..+|++.. +|..+..+++|++|+..+ ...+|+...
T Consensus 242 nl~~~dis~--------n~l~-~lp~wi~~~-~nl--e~l~~n~N~l~~--lp~ri~~~~~L~~l~~~~nel~yip~~le 307 (1081)
T KOG0618|consen 242 NLQYLDISH--------NNLS-NLPEWIGAC-ANL--EALNANHNRLVA--LPLRISRITSLVSLSAAYNELEYIPPFLE 307 (1081)
T ss_pred cceeeecch--------hhhh-cchHHHHhc-ccc--eEecccchhHHh--hHHHHhhhhhHHHHHhhhhhhhhCCCccc
Confidence 445555555 7776 567777777 777 888888888765 677777778888877777 777888888
Q ss_pred CCCCCCEEEccCcccceecCcc---------ccccCCCcC---------CCCccccceeccCCcCCCCCCCCCCCccccc
Q 038586 151 EYPTLFDVEGYMASLVQILEKD---------QHDEGSQNG---------QQGAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~---------~~L~l~~~~---------~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
.++.|++|||..|++. .+|.. ..|+.+.+. .....++.+++.+| .
T Consensus 308 ~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN----------------~ 370 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN----------------H 370 (1081)
T ss_pred ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC----------------c
Confidence 8888888888888876 55532 111111110 00111344555555 4
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----------------------
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---------------------- 270 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---------------------- 270 (353)
++...-+.+-+..+|+.|+|++|++. .+|+ ..+. ++..|++|+|++
T Consensus 371 Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpa---s~~~--------kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 371 LTDSCFPVLVNFKHLKVLHLSYNRLN-SFPA---SKLR--------KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred ccccchhhhccccceeeeeecccccc-cCCH---HHHh--------chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 44444444555555666666666553 2331 2223 445555555555
Q ss_pred ----CCCchhhcCCCCCCEEEccCCCC--CCCCcccccccCcccchhccccCC
Q 038586 271 ----QNDPIELLCLDNILEIVESEVEI--DSLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 271 ----~~iP~~l~~l~~L~~L~Ls~N~l--~~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
..+| ++..++.|+.+|+|.|++ ..+|. .... +.|++||..-+.
T Consensus 439 sN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~--~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 439 SNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPE--ALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CCceeech-hhhhcCcceEEecccchhhhhhhhh--hCCC-cccceeeccCCc
Confidence 3445 666777778888888877 45555 2222 677777764443
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.27 E-value=2.3e-12 Score=130.67 Aligned_cols=245 Identities=16% Similarity=0.144 Sum_probs=155.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
++.+||+++ |.+. .+|..+..+ .+| +.|+++.|.+.. +|....++.+|++|.|.+ ...+|.++.
T Consensus 46 ~L~~l~lsn--------n~~~-~fp~~it~l-~~L--~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 46 KLKSLDLSN--------NQIS-SFPIQITLL-SHL--RQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQSLPASIS 111 (1081)
T ss_pred eeEEeeccc--------cccc-cCCchhhhH-HHH--hhcccchhhHhh--CchhhhhhhcchhheeccchhhcCchhHH
Confidence 478999998 6664 899999999 999 999999999988 788999999999999999 888999999
Q ss_pred CCCCCCEEEccCcccceecCc-------cccccCCCc------CCCCcccc----------------------ceeccCC
Q 038586 151 EYPTLFDVEGYMASLVQILEK-------DQHDEGSQN------GQQGAEAE----------------------AVCIQHN 195 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~-------~~~L~l~~~------~~l~~~l~----------------------~l~l~~N 195 (353)
.+.+|++||+++|.|. .+|. ...+..++| +... .+ .+++.+|
T Consensus 112 ~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~--ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N 188 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS--IKKLDLRLNVLGGSFLIDIYNLTHQLDLRYN 188 (1081)
T ss_pred hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc--chhhhhhhhhcccchhcchhhhheeeecccc
Confidence 9999999999999976 3331 122233332 0000 12 2444555
Q ss_pred cCCCCCCCCCCCccccceeeeCCcch-hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---C
Q 038586 196 QANDIPCSSNNNVQTVEFEGEMEHSL-SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---Q 271 (353)
Q Consensus 196 ~l~~i~~~~~~~l~~~~l~g~~p~~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~ 271 (353)
.+.....+...+++.+..+...-..+ -..++|+.|+.++|.++...+ . + .-.+|+.+++++ .
T Consensus 189 ~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~----~--p--------~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 189 EMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV----H--P--------VPLNLQYLDISHNNLS 254 (1081)
T ss_pred hhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc----c--c--------ccccceeeecchhhhh
Confidence 44433322222222222111100000 012345555555555543222 1 1 345677777777 6
Q ss_pred CCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcccc------CCCcccccccccccccc-cccCCChHHHHH
Q 038586 272 NDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIA------EPRDEECGKLQAVAWEE-EMGPLPVEFLSR 344 (353)
Q Consensus 272 ~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~------~~~~~~c~~l~~~~~~~-~~~~lp~~~~~~ 344 (353)
.+|+++..+.+|+.++..+|.|..+|. .+...+.|+.++... .+..+.-..+..++..+ ..+.+|..++.-
T Consensus 255 ~lp~wi~~~~nle~l~~n~N~l~~lp~--ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 255 NLPEWIGACANLEALNANHNRLVALPL--RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV 332 (1081)
T ss_pred cchHHHHhcccceEecccchhHHhhHH--HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhh
Confidence 777777778888888888888877777 666666777666432 23333344555555443 347778888877
Q ss_pred HHHHhh
Q 038586 345 VNQVLN 350 (353)
Q Consensus 345 ~~~~~~ 350 (353)
++.++|
T Consensus 333 ~~~~l~ 338 (1081)
T KOG0618|consen 333 LNASLN 338 (1081)
T ss_pred hhHHHH
Confidence 777655
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.13 E-value=7.8e-12 Score=117.33 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=94.1
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhcc---ccccEEEeecCCCCCCC---CCcccCCC-CCCcEEeccC--CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNC---MIYDIWTLVTINFGGIP---VPEFVGSL-SKLSLNTVDH--QG 143 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~---L~~~~L~Ls~N~l~~~~---~P~~~~~L-~~L~~L~Ls~--~~ 143 (353)
+++.|++++ +.+.+..+..+..+ .. | ++|++++|++++.. +...+..+ ++|+.|++++ ..
T Consensus 82 ~L~~L~l~~--------~~~~~~~~~~~~~l-~~~~~L--~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 82 GLQELDLSD--------NALGPDGCGVLESL-LRSSSL--QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred ceeEEEccC--------CCCChhHHHHHHHH-hccCcc--cEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 566666666 56655555555555 44 6 66666666665310 22234445 6666666665 11
Q ss_pred -----CCCCCCCCCCCCCEEEccCccccee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee
Q 038586 144 -----EIIHSVPEYPTLFDVEGYMASLVQI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE 214 (353)
Q Consensus 144 -----~lP~~l~~L~~L~~L~Ls~N~l~g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~ 214 (353)
.++..+..+++|++|++++|.+.+. ++.. ...... ++.+++++|++.+.. .
T Consensus 151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-------l~~~~~-L~~L~L~~n~i~~~~------------~ 210 (319)
T cd00116 151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG-------LKANCN-LEVLDLNNNGLTDEG------------A 210 (319)
T ss_pred chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH-------HHhCCC-CCEEeccCCccChHH------------H
Confidence 1233344555666666666665531 1111 111123 566666666221100 0
Q ss_pred eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCC--------chhhcCCCCCCEE
Q 038586 215 GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND--------PIELLCLDNILEI 286 (353)
Q Consensus 215 g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i--------P~~l~~l~~L~~L 286 (353)
+.++..+..+++|++|++++|++++... ..+... +. ...+.|++|++++..+ ...+..+++|+++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l~~~~~----~~l~~~-~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l 283 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNLTDAGA----AALASA-LL--SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcCchHHH----HHHHHH-Hh--ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 1233445556777777777777654211 111100 00 0235677777776332 3345556677777
Q ss_pred EccCCCCC
Q 038586 287 VESEVEID 294 (353)
Q Consensus 287 ~Ls~N~l~ 294 (353)
++++|.++
T Consensus 284 ~l~~N~l~ 291 (319)
T cd00116 284 DLRGNKFG 291 (319)
T ss_pred ECCCCCCc
Confidence 77777774
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=8.9e-12 Score=120.71 Aligned_cols=170 Identities=12% Similarity=0.130 Sum_probs=140.9
Q ss_pred EEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCC
Q 038586 74 FKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPE 151 (353)
Q Consensus 74 v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~ 151 (353)
.+..||+. |.+. ++|..+..+ ..| +.+.|..|.+.. +|..++++..|.+|||+. ...+|..++.
T Consensus 77 t~~aDlsr--------NR~~-elp~~~~~f-~~L--e~liLy~n~~r~--ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~ 142 (722)
T KOG0532|consen 77 TVFADLSR--------NRFS-ELPEEACAF-VSL--ESLILYHNCIRT--IPEAICNLEALTFLDLSSNQLSHLPDGLCD 142 (722)
T ss_pred hhhhhccc--------cccc-cCchHHHHH-HHH--HHHHHHhcccee--cchhhhhhhHHHHhhhccchhhcCChhhhc
Confidence 34567777 8887 899888888 888 999999999987 799999999999999998 8888998888
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEE
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~ 231 (353)
|+ |+.|-+++|+++ .+|.. .+.... +..++.+.| ++. .+|+.++.+..|+.|.
T Consensus 143 lp-Lkvli~sNNkl~-~lp~~-------ig~~~t-l~~ld~s~n----------------ei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 143 LP-LKVLIVSNNKLT-SLPEE-------IGLLPT-LAHLDVSKN----------------EIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred Cc-ceeEEEecCccc-cCCcc-------cccchh-HHHhhhhhh----------------hhh-hchHHhhhHHHHHHHH
Confidence 87 899999999988 77777 664445 778888888 554 6788899999999999
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++.|++.. +| +.+. .-.|..||++. ..||-.|..|+.|++|-|.+|.+.+-|.
T Consensus 196 vrRn~l~~-lp----~El~---------~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 196 VRRNHLED-LP----EELC---------SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred Hhhhhhhh-CC----HHHh---------CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 99999875 55 3444 23478889988 7789999999999999999999987776
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=8.3e-12 Score=117.15 Aligned_cols=180 Identities=17% Similarity=0.091 Sum_probs=85.4
Q ss_pred HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCC---CcEEeccC--CC-----CCCCCCCCC-CCCCEEEccCcccc
Q 038586 98 SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSK---LSLNTVDH--QG-----EIIHSVPEY-PTLFDVEGYMASLV 166 (353)
Q Consensus 98 ~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~---L~~L~Ls~--~~-----~lP~~l~~L-~~L~~L~Ls~N~l~ 166 (353)
..+..+ ++| ++|++++|.+.+. .+..+..+.+ |++|++++ .. .+...+..+ ++|+.|++++|.++
T Consensus 75 ~~l~~~-~~L--~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 75 QGLTKG-CGL--QELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HHHHhc-Cce--eEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 344444 555 6666666655543 3443333333 66666555 11 122233344 55566666665555
Q ss_pred ee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee----eCCcchhccCCCCEEEcccCcCc
Q 038586 167 QI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 167 g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
+. ++.. +..... ++.+++++| .+++ .++..+...++|++|++++|.++
T Consensus 151 ~~~~~~~~~~-------~~~~~~-L~~L~l~~n----------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 151 GASCEALAKA-------LRANRD-LKELNLANN----------------GIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred chHHHHHHHH-------HHhCCC-cCEEECcCC----------------CCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 31 1111 122223 556666666 3332 23334445567777777777665
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCCCCCch----hhc-----CCCCCCEEEccCCCCC-----CCCccccccc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPI----ELL-----CLDNILEIVESEVEID-----SLPDRLVFDV 304 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~----~l~-----~l~~L~~L~Ls~N~l~-----~iP~~~~~~~ 304 (353)
+.........+. .+++|++|++++..+-. .+. ..++|++|++++|.++ .++. .+..
T Consensus 207 ~~~~~~l~~~~~--------~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--~~~~ 276 (319)
T cd00116 207 DEGASALAETLA--------SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE--VLAE 276 (319)
T ss_pred hHHHHHHHHHhc--------ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH--HHhc
Confidence 322100002223 56667777777622221 111 1356777777777763 1223 3344
Q ss_pred Ccccchhcccc
Q 038586 305 REFLSELDQIA 315 (353)
Q Consensus 305 l~~L~~Ld~~~ 315 (353)
.+.|+++|...
T Consensus 277 ~~~L~~l~l~~ 287 (319)
T cd00116 277 KESLLELDLRG 287 (319)
T ss_pred CCCccEEECCC
Confidence 45555555433
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=7.4e-12 Score=121.27 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=139.8
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEA 187 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l 187 (353)
...||+.|++.. +|..++.+..|+.+.|.. ...+|..++++..|.+||++.|+++ .+|.- ...+. +
T Consensus 78 ~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~-------lC~lp--L 145 (722)
T KOG0532|consen 78 VFADLSRNRFSE--LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDG-------LCDLP--L 145 (722)
T ss_pred hhhhcccccccc--CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChh-------hhcCc--c
Confidence 788999999998 899999999999999988 8899999999999999999999988 66654 33333 7
Q ss_pred cceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceee
Q 038586 188 EAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEAL 267 (353)
Q Consensus 188 ~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~ 267 (353)
+.+.+++| +++ .+|..++.+..|..||.+.|++. .+| ..++ ++.+|+.|+
T Consensus 146 kvli~sNN----------------kl~-~lp~~ig~~~tl~~ld~s~nei~-slp----sql~--------~l~slr~l~ 195 (722)
T KOG0532|consen 146 KVLIVSNN----------------KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLP----SQLG--------YLTSLRDLN 195 (722)
T ss_pred eeEEEecC----------------ccc-cCCcccccchhHHHhhhhhhhhh-hch----HHhh--------hHHHHHHHH
Confidence 88999999 555 67888888889999999999996 467 6888 899999999
Q ss_pred cCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 268 LAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 268 L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
+.. ..+|+++..| .|..||+|.|++..||- .|..|+.|+.|..-.+
T Consensus 196 vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv--~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV--DFRKMRHLQVLQLENN 244 (722)
T ss_pred HhhhhhhhCCHHHhCC-ceeeeecccCceeecch--hhhhhhhheeeeeccC
Confidence 887 7899999965 69999999999999999 9999999998865433
No 25
>PLN03150 hypothetical protein; Provisional
Probab=98.96 E-value=1e-09 Score=112.61 Aligned_cols=101 Identities=15% Similarity=0.138 Sum_probs=73.2
Q ss_pred CcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccc
Q 038586 134 LSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQT 210 (353)
Q Consensus 134 L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~ 210 (353)
++.|+|++ .|.+|..++++++|+.|+|++|.+.|.+|.. ++.+.. ++.|++++|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-------~~~l~~-L~~LdLs~N--------------- 476 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-------LGSITS-LEVLDLSYN--------------- 476 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-------HhCCCC-CCEEECCCC---------------
Confidence 56677777 6677777777777888888887777777776 666666 777777777
Q ss_pred cceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccC-CCccceeecCC
Q 038586 211 VEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQ-EAVEEEALLAQ 270 (353)
Q Consensus 211 ~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~-l~~L~~L~L~~ 270 (353)
+++|.+|+.++++++|++|+|++|+++|.+| ..++ . ...+..+++.+
T Consensus 477 -~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP----~~l~--------~~~~~~~~l~~~~ 524 (623)
T PLN03150 477 -SFNGSIPESLGQLTSLRILNLNGNSLSGRVP----AALG--------GRLLHRASFNFTD 524 (623)
T ss_pred -CCCCCCchHHhcCCCCCEEECcCCcccccCC----hHHh--------hccccCceEEecC
Confidence 7777777777788888888888888877777 5555 2 23445566655
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=7.9e-10 Score=107.33 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=130.0
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC-CCcEEeccC--CCCCCCCCCCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS-KLSLNTVDH--QGEIIHSVPEY 152 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~-~L~~L~Ls~--~~~lP~~l~~L 152 (353)
.+++.. +.+...+ ..+..+ +.+ +.|++.+|.++. +|+....++ +|+.|+++. ...+|..++.+
T Consensus 97 ~l~~~~--------~~~~~~~-~~~~~~-~~l--~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l 162 (394)
T COG4886 97 SLDLNL--------NRLRSNI-SELLEL-TNL--TSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162 (394)
T ss_pred eeeccc--------cccccCc-hhhhcc-cce--eEEecCCccccc--Cccccccchhhcccccccccchhhhhhhhhcc
Confidence 466666 5554333 335566 778 888888888887 677777775 888998888 77777778888
Q ss_pred CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC--CCCCccccceee----eCCcchhccCC
Q 038586 153 PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS--SNNNVQTVEFEG----EMEHSLSEVYD 226 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~--~~~~l~~~~l~g----~~p~~l~~l~~ 226 (353)
++|+.|++++|++. .+|.. .+.... ++.+.+++|+++++|.. ....+..+.+.+ ..+..+.++.+
T Consensus 163 ~~L~~L~l~~N~l~-~l~~~-------~~~~~~-L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~ 233 (394)
T COG4886 163 PNLKNLDLSFNDLS-DLPKL-------LSNLSN-LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN 233 (394)
T ss_pred ccccccccCCchhh-hhhhh-------hhhhhh-hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhccc
Confidence 89999999988887 55544 223444 77788888877777764 222233333322 35667778888
Q ss_pred CCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCC
Q 038586 227 IFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSL 296 (353)
Q Consensus 227 L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~i 296 (353)
+..+.+.+|++.. ++ ..++ .++.++.|++++ ..++. ++.+.+++.|++++|.+..+
T Consensus 234 l~~l~l~~n~~~~-~~----~~~~--------~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 234 LSGLELSNNKLED-LP----ESIG--------NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccCCceeee-cc----chhc--------cccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 8888888888754 24 5666 788888888888 45555 78888899999999888433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=2e-09 Score=104.46 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=130.6
Q ss_pred EEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCC-CCCEEEccCcccceecCccccccCCCcCCCCccc
Q 038586 111 IWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYP-TLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEA 187 (353)
Q Consensus 111 ~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~-~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l 187 (353)
.++++.|.+.. -+..+..++.++.|++.+ ...+|+..+.+. +|+.|++++|.+. .+|.. ...+.. +
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-------~~~l~~-L 165 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-------LRNLPN-L 165 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-------hhcccc-c
Confidence 58888888855 355566779999999999 889999988885 9999999999988 55433 556666 8
Q ss_pred cceeccCCcCCCCCCC--CCCCccccceee----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCC
Q 038586 188 EAVCIQHNQANDIPCS--SNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEA 261 (353)
Q Consensus 188 ~~l~l~~N~l~~i~~~--~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~ 261 (353)
+.+++++|++.+++.. ....+..+.+.+ .+|........|.++.+++|++.. .+ ..+. ++.
T Consensus 166 ~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~----~~~~--------~~~ 232 (394)
T COG4886 166 KNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LL----SSLS--------NLK 232 (394)
T ss_pred cccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cc----hhhh--------hcc
Confidence 9999999988888765 444444444433 455555555668888888885332 33 3455 677
Q ss_pred ccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcccc
Q 038586 262 VEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 262 ~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~ 315 (353)
.+..+.+.+ ..+|..+..+++++.|++++|++..++. ++.+..++.||...
T Consensus 233 ~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~ 286 (394)
T COG4886 233 NLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSG 286 (394)
T ss_pred cccccccCCceeeeccchhccccccceecccccccccccc---ccccCccCEEeccC
Confidence 777777666 3447788888899999999999988877 66777777777643
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.67 E-value=4.2e-09 Score=98.47 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=82.4
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCCCCCCCCCCEEEccC-ccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHSVPEYPTLFDVEGYM-ASL 165 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~l~~L~~L~~L~Ls~-N~l 165 (353)
.+++ .+|..+. ..- ..++|..|.|+.. -|..|+.+++|+.|||++ +..| |..|..+.+|..|-+.+ |++
T Consensus 56 ~GL~-eVP~~LP---~~t--veirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 56 KGLT-EVPANLP---PET--VEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred CCcc-cCcccCC---Ccc--eEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 4454 5665332 455 8889999999995 455699999999999999 5555 77888999888887766 777
Q ss_pred ceecC-ccccccCCCcCCCCccccceeccCCcCCCCCCCCC---CCcccc-----ceeeeCCc-chhccCCCCEEEcccC
Q 038586 166 VQILE-KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN---NNVQTV-----EFEGEMEH-SLSEVYDIFDVERYSS 235 (353)
Q Consensus 166 ~g~lp-~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~---~~l~~~-----~l~g~~p~-~l~~l~~L~~L~Ls~N 235 (353)
+ .+| +. ++.+.. ++.|.+.-|++.-++.... ..+..+ .+. .++. +|..+..++.+.+..|
T Consensus 129 ~-~l~k~~-------F~gL~s-lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 129 T-DLPKGA-------FGGLSS-LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred h-hhhhhH-------hhhHHH-HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcC
Confidence 7 444 33 555555 6666666664433321111 011000 222 2333 6667777777777777
Q ss_pred c
Q 038586 236 S 236 (353)
Q Consensus 236 ~ 236 (353)
.
T Consensus 199 p 199 (498)
T KOG4237|consen 199 P 199 (498)
T ss_pred c
Confidence 6
No 29
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.64 E-value=4.8e-08 Score=63.69 Aligned_cols=42 Identities=38% Similarity=0.847 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhCCC-CCCCCCCCCCCCCCCCCCccccceEec
Q 038586 26 IDEEKEALLTFEQSPV-DEYGALSSWGREDDKRNCCKWRGVCCN 68 (353)
Q Consensus 26 ~~~e~~aLl~~k~~~~-~~~~~~~~W~~~~~~~~~C~w~gv~c~ 68 (353)
+++|++||++||+++. +|.+.+.+|.... ..+||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence 3689999999999999 4657899995321 1239999999995
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=1.8e-08 Score=86.45 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=22.0
Q ss_pred hhcCCCCCCEEEccCCCCCCCCc--ccccccCcccchhccc
Q 038586 276 ELLCLDNILEIVESEVEIDSLPD--RLVFDVREFLSELDQI 314 (353)
Q Consensus 276 ~l~~l~~L~~L~Ls~N~l~~iP~--~~~~~~l~~L~~Ld~~ 314 (353)
.+..+++|+.|++.+|++..-+. ..++..+|.|+.||..
T Consensus 108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 45667899999999999844343 1256778888888864
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.56 E-value=2.7e-08 Score=85.28 Aligned_cols=106 Identities=15% Similarity=0.172 Sum_probs=32.0
Q ss_pred ccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNG 181 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~ 181 (353)
..+ ++|+|++|.|+. + +.++ .+.+|+.|+|++ ...++ .+..++.|++|++++|+++..-+.. ..
T Consensus 19 ~~~--~~L~L~~n~I~~--I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l-------~~ 85 (175)
T PF14580_consen 19 VKL--RELNLRGNQIST--I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL-------DK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH-------HH
T ss_pred ccc--cccccccccccc--c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch-------HH
Confidence 456 777777777775 3 2344 466777777777 44443 3666777888888888776221111 11
Q ss_pred CCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 182 QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 182 ~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
.+.. ++++++++|++.++. . -..++.+++|++|++.+|++..
T Consensus 86 ~lp~-L~~L~L~~N~I~~l~--------------~-l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPN-LQELYLSNNKISDLN--------------E-LEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp H-TT---EEE-TTS---SCC--------------C-CGGGGG-TT--EEE-TT-GGGG
T ss_pred hCCc-CCEEECcCCcCCChH--------------H-hHHHHcCCCcceeeccCCcccc
Confidence 2334 667777777444332 1 1356677788888888887754
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=7e-08 Score=87.59 Aligned_cols=128 Identities=13% Similarity=0.072 Sum_probs=86.4
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
..+.|+.+||++|.++ .+... ...... ++.+++++| .+.. ...+..+++|+.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDES-------vKL~Pk-ir~L~lS~N----------------~i~~--v~nLa~L~~L~~L 334 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDES-------VKLAPK-LRRLILSQN----------------RIRT--VQNLAELPQLQLL 334 (490)
T ss_pred hHhhhhhccccccchh-hhhhh-------hhhccc-eeEEecccc----------------ceee--ehhhhhcccceEe
Confidence 3445677777777765 22222 122222 566677777 4442 2347788899999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCc--hhhcCCCCCCEEEccCCCCCCCCcccccccCccc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--IELLCLDNILEIVESEVEIDSLPDRLVFDVREFL 308 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L 308 (353)
|||+|.++.. . .+-. ++.+++.|.|++..|- ..++.+-+|..||+++|+|..+-+.-.+|+++.|
T Consensus 335 DLS~N~Ls~~-~----Gwh~--------KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCL 401 (490)
T KOG1259|consen 335 DLSGNLLAEC-V----GWHL--------KLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCL 401 (490)
T ss_pred ecccchhHhh-h----hhHh--------hhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHH
Confidence 9999988643 2 3434 7788889999884442 3467778899999999999666554468999999
Q ss_pred chhccccCCC
Q 038586 309 SELDQIAEPR 318 (353)
Q Consensus 309 ~~Ld~~~~~~ 318 (353)
+.+....+|.
T Consensus 402 E~l~L~~NPl 411 (490)
T KOG1259|consen 402 ETLRLTGNPL 411 (490)
T ss_pred HHHhhcCCCc
Confidence 9988776654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.50 E-value=1.2e-08 Score=92.59 Aligned_cols=114 Identities=13% Similarity=0.097 Sum_probs=80.7
Q ss_pred cccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecC
Q 038586 93 KGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILE 170 (353)
Q Consensus 93 ~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp 170 (353)
.|.+-.++..- +.| +.+|||+|.|+. +..++.-++.++.|++|+ ...+- .+..|++|+.|||++|.++ .+-
T Consensus 273 ~G~~~~~~dTW-q~L--telDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls-~~~ 345 (490)
T KOG1259|consen 273 NGSALVSADTW-QEL--TELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLA-ECV 345 (490)
T ss_pred CCceEEecchH-hhh--hhccccccchhh--hhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhH-hhh
Confidence 33333333334 566 889999999988 678888888999999998 33333 3778889999999999877 444
Q ss_pred ccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 171 KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 171 ~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
.+ ...++. .+.+.++.|.+.+ -+.++++.+|..||+++|+|..
T Consensus 346 Gw-------h~KLGN-IKtL~La~N~iE~------------------LSGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 346 GW-------HLKLGN-IKTLKLAQNKIET------------------LSGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hh-------HhhhcC-EeeeehhhhhHhh------------------hhhhHhhhhheeccccccchhh
Confidence 44 555666 7778888882221 1346677788889999888754
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=3.9e-07 Score=64.10 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=42.1
Q ss_pred cccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCccc
Q 038586 106 CMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 106 ~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l 165 (353)
+| ++|++++|+++.. -+..|.++++|++|++++ ...+| ..|.++++|++|++++|++
T Consensus 2 ~L--~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NL--ESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TE--SEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cC--cEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 56 7888888888874 335677888888888887 44554 4578888888888888864
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.3e-07 Score=89.76 Aligned_cols=166 Identities=11% Similarity=0.024 Sum_probs=89.9
Q ss_pred HhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-----CCCCCCCCCCCCCCCEEEccCcccc--------ee
Q 038586 102 LCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-----QGEIIHSVPEYPTLFDVEGYMASLV--------QI 168 (353)
Q Consensus 102 ~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-----~~~lP~~l~~L~~L~~L~Ls~N~l~--------g~ 168 (353)
++ ..| +...|.+..+...+.-.....+++++.|||+. ...+-.-...|++|+.|+++.|++. +.
T Consensus 119 n~-kkL--~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NL-KKL--REISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hH-Hhh--hheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 45 566 66677666665421112345677777777776 2222233445677777777777654 23
Q ss_pred cCccccccCCCcCCC-----------CccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcC
Q 038586 169 LEKDQHDEGSQNGQQ-----------GAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSL 237 (353)
Q Consensus 169 lp~~~~L~l~~~~~l-----------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l 237 (353)
++..+.|.+++++.. .. ++.+++..| ...+.--.+...+..|+.|||++|++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N----------------~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEAN----------------EIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcc----------------cccceecchhhhhhHHhhccccCCcc
Confidence 444445555544432 12 344555555 21111112233456678888888876
Q ss_pred cccCCCCCccccchhhhhcccCCCccceeecCCCCC-----chh-----hcCCCCCCEEEccCCCCCCCCc
Q 038586 238 DQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND-----PIE-----LLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 238 ~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i-----P~~-----l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
-.... ..-++ .++.|+.|+++...+ |+. ....++|++|+++.|++...+.
T Consensus 259 i~~~~---~~~~~--------~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 259 IDFDQ---GYKVG--------TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccccc---ccccc--------cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 43210 02344 667777777776322 222 2356788888888888866665
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=1.3e-06 Score=61.48 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=39.7
Q ss_pred CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEc
Q 038586 153 PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVER 232 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~L 232 (353)
++|++|++++|++...-+.. +..+.. ++++++++| .++...|..|.++++|++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~-------f~~l~~-L~~L~l~~N----------------~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDS-------FSNLPN-LETLDLSNN----------------NLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSSTESEECTTT-------TTTGTT-ESEEEETSS----------------SESEEETTTTTTSTTESEEEE
T ss_pred CcCcEEECCCCCCCccCHHH-------HcCCCC-CCEeEccCC----------------ccCccCHHHHcCCCCCCEEeC
Confidence 45677777777766433344 555555 677777777 665555666777777777777
Q ss_pred ccCcC
Q 038586 233 YSSSL 237 (353)
Q Consensus 233 s~N~l 237 (353)
++|+|
T Consensus 57 ~~N~l 61 (61)
T PF13855_consen 57 SNNNL 61 (61)
T ss_dssp TSSSB
T ss_pred cCCcC
Confidence 77764
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.17 E-value=1.5e-06 Score=91.99 Aligned_cols=207 Identities=11% Similarity=0.069 Sum_probs=115.9
Q ss_pred cEEEEEcCCCCCccccccCC-cccccHH-HHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKIL-KGTISSA-LLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS 148 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l-~g~lp~~-l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~ 148 (353)
.++.|-+.+ |.. ...++.. |..+ +.| ++|||++|.=-+. +|+.+++|-+|++|+++. ...+|..
T Consensus 546 ~L~tLll~~--------n~~~l~~is~~ff~~m-~~L--rVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 546 KLRTLLLQR--------NSDWLLEISGEFFRSL-PLL--RVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred ccceEEEee--------cchhhhhcCHHHHhhC-cce--EEEECCCCCccCc-CChHHhhhhhhhcccccCCCccccchH
Confidence 567777777 541 2356655 4457 999 9999998765555 999999999999999999 7789999
Q ss_pred CCCCCCCCEEEccCccccee-------cCccccccCCCcC------------CCCccccceeccCCcC---CCCCCCCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQNG------------QQGAEAEAVCIQHNQA---NDIPCSSNN 206 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~------------~l~~~l~~l~l~~N~l---~~i~~~~~~ 206 (353)
+++|.+|.+|++.++..... ++.+++|.+..-. .+.. ++.+....... .++.. ..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~-L~~ls~~~~s~~~~e~l~~--~~ 690 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEH-LENLSITISSVLLLEDLLG--MT 690 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccc-hhhheeecchhHhHhhhhh--hH
Confidence 99999999999987764322 3444555443322 1111 11111111100 00000 00
Q ss_pred Ccc----ccc----eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhc-ccCCCccceeecCCCCCchhh
Q 038586 207 NVQ----TVE----FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQN-KQQEAVEEEALLAQQNDPIEL 277 (353)
Q Consensus 207 ~l~----~~~----l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~iP~~l 277 (353)
.+. ... -.-..+.++..+.+|+.|.+.++.+..... .......... +..+..+...+......+.+.
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~----~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI----EWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred HHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc----ccccccchhhhHHHHHHHHhhccccccccchh
Confidence 000 000 112456677888999999999998764322 1111000000 001112222222224444555
Q ss_pred cCCCCCCEEEccCCCC--CCCCc
Q 038586 278 LCLDNILEIVESEVEI--DSLPD 298 (353)
Q Consensus 278 ~~l~~L~~L~Ls~N~l--~~iP~ 298 (353)
...++|+.|.+..... ..+|.
T Consensus 767 ~f~~~L~~l~l~~~~~~e~~i~~ 789 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSCRLLEDIIPK 789 (889)
T ss_pred hccCcccEEEEecccccccCCCH
Confidence 5568888999888877 44443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.10 E-value=7.6e-07 Score=94.13 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=78.8
Q ss_pred ccccccEEEeecCC--CCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 105 NCMIYDIWTLVTIN--FGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~--l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
+.| ++|-+..|. +... .+++|..|+.|++|||++ .+.+|.++++|-+|++|++++..+. .+|..
T Consensus 545 ~~L--~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~------- 613 (889)
T KOG4658|consen 545 PKL--RTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSG------- 613 (889)
T ss_pred Ccc--ceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchH-------
Confidence 456 888999886 5553 455688999999999996 8899999999999999999999988 78877
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCc
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSS 236 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~ 236 (353)
+..+.. +.+|++..+ .....+|.....|++|++|.+....
T Consensus 614 l~~Lk~-L~~Lnl~~~----------------~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 614 LGNLKK-LIYLNLEVT----------------GRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHHh-hheeccccc----------------cccccccchhhhcccccEEEeeccc
Confidence 666666 777777766 3222334445556777777765543
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.09 E-value=2.2e-07 Score=85.93 Aligned_cols=188 Identities=13% Similarity=0.014 Sum_probs=103.3
Q ss_pred ccccccEEEeecCCCCCCCCCcc----cCCCCCCcEEeccC--CCCC--------------CCCCCCCCCCCEEEccCcc
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEF----VGSLSKLSLNTVDH--QGEI--------------IHSVPEYPTLFDVEGYMAS 164 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~----~~~L~~L~~L~Ls~--~~~l--------------P~~l~~L~~L~~L~Ls~N~ 164 (353)
++| +++|||.|.|... .++. +.+++.|+.|.|.+ .|+. -...+.-++|+++..++|+
T Consensus 92 ~~L--~~ldLSDNA~G~~-g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 92 PKL--QKLDLSDNAFGPK-GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred Cce--eEeeccccccCcc-chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 467 8888888887655 3333 44677888888877 2221 1224455677777777777
Q ss_pred ccee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee--eCCcchhccCCCCEEEcccCcCc
Q 038586 165 LVQI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG--EMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 165 l~g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g--~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
+... +... +..... ++.+.++.|.+ .-.| .+-..+..+++|+.|||.+|-|+
T Consensus 169 len~ga~~~A~~-------~~~~~~-leevr~~qN~I--------------~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 169 LENGGATALAEA-------FQSHPT-LEEVRLSQNGI--------------RPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccHHHHHHH-------HHhccc-cceEEEecccc--------------cCchhHHHHHHHHhCCcceeeecccchhh
Confidence 5410 0001 111222 45555555511 1111 12345677888999999999875
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC------CCC--chhhc-CCCCCCEEEccCCCCCC-----CCccccccc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ------QND--PIELL-CLDNILEIVESEVEIDS-----LPDRLVFDV 304 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~------~~i--P~~l~-~l~~L~~L~Ls~N~l~~-----iP~~~~~~~ 304 (353)
..-..-....+. .+++|+++++++ |.+ -..+. ..++|++|.+.+|.+.. +-. ....
T Consensus 227 ~egs~~LakaL~--------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~--~~~e 296 (382)
T KOG1909|consen 227 LEGSVALAKALS--------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA--CMAE 296 (382)
T ss_pred hHHHHHHHHHhc--------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH--HHhc
Confidence 311100002233 677888888887 222 12222 35788888888888821 112 3445
Q ss_pred CcccchhccccCCCccccccccc
Q 038586 305 REFLSELDQIAEPRDEECGKLQA 327 (353)
Q Consensus 305 l~~L~~Ld~~~~~~~~~c~~l~~ 327 (353)
.+.|..|+.-.+...+.|..+..
T Consensus 297 k~dL~kLnLngN~l~e~de~i~e 319 (382)
T KOG1909|consen 297 KPDLEKLNLNGNRLGEKDEGIDE 319 (382)
T ss_pred chhhHHhcCCcccccccchhHHH
Confidence 66677777655555444444433
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.7e-06 Score=82.28 Aligned_cols=163 Identities=11% Similarity=0.000 Sum_probs=84.1
Q ss_pred ccccccEEEeecCCCCCCCCC--cccCCCCCCcEEeccC-CCCCCC---CCCCCCCCCEEEccCcccce--------ecC
Q 038586 105 NCMIYDIWTLVTINFGGIPVP--EFVGSLSKLSLNTVDH-QGEIIH---SVPEYPTLFDVEGYMASLVQ--------ILE 170 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P--~~~~~L~~L~~L~Ls~-~~~lP~---~l~~L~~L~~L~Ls~N~l~g--------~lp 170 (353)
+++ +.||||.|-|... .| .....|++|+.|+|+. .-..|. .-..++.|+.|.|+.+.++. ..|
T Consensus 146 ~~v--~~LdLS~NL~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 146 PNV--RDLDLSRNLFHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred Ccc--eeecchhhhHHhH-HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 555 5555555555443 22 1233555555555555 111110 01234455555555555442 345
Q ss_pred ccccccCCCcC----------CCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCccc
Q 038586 171 KDQHDEGSQNG----------QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQI 240 (353)
Q Consensus 171 ~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 240 (353)
.+..|++..|. .+.. +++|+|++|++-+.+ ++ ...+.++.|..|+++.+.+...
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~-L~~LdLs~N~li~~~----------~~-----~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQT-LQELDLSNNNLIDFD----------QG-----YKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhH-HhhccccCCcccccc----------cc-----cccccccchhhhhccccCcchh
Confidence 55555555552 1223 678899988554433 11 2345667777788887776532
Q ss_pred -CCCCCccccchhhhhcccCCCccceeecCCCCC---c--hhhcCCCCCCEEEccCCCC
Q 038586 241 -LESERTEDHGDAAIQNKQQEAVEEEALLAQQND---P--IELLCLDNILEIVESEVEI 293 (353)
Q Consensus 241 -~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i---P--~~l~~l~~L~~L~Ls~N~l 293 (353)
.| +.+ ....-...++|++|++....| + ..+..+++|+.|....|.+
T Consensus 287 ~~~-----d~~--s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 287 AEP-----DVE--SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cCC-----Ccc--chhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 12 110 000001566788888877444 2 1344567777788777877
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.87 E-value=1.8e-06 Score=84.59 Aligned_cols=32 Identities=25% Similarity=0.191 Sum_probs=19.3
Q ss_pred cceeecCCCC---CchhhcCCCCCCEEEccCCCCC
Q 038586 263 EEEALLAQQN---DPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 263 L~~L~L~~~~---iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
|+.+++++.. ++..+..+.++..+++.+|++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccc
Confidence 5666666622 2244556667777777777763
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.71 E-value=9.2e-06 Score=79.59 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=84.2
Q ss_pred ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQ 182 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~ 182 (353)
..+ +.+++..|.+.. +-..++.+++|+.|++.. ...+...+..+++|++|++++|.++. +... ..
T Consensus 72 ~~l--~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~~l--------~~ 138 (414)
T KOG0531|consen 72 TSL--KELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LEGL--------ST 138 (414)
T ss_pred HhH--Hhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchheecccccccc-ccch--------hh
Confidence 444 555566666654 233355666666666666 44444335566666666666666652 1111 12
Q ss_pred CCccccceeccCCcCCCCCCCC-CCCcccc-----ceeeeCCcc-hhccCCCCEEEcccCcCcccCCCCCccccchhhhh
Q 038586 183 QGAEAEAVCIQHNQANDIPCSS-NNNVQTV-----EFEGEMEHS-LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQ 255 (353)
Q Consensus 183 l~~~l~~l~l~~N~l~~i~~~~-~~~l~~~-----~l~g~~p~~-l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~ 255 (353)
+.. ++.|++.+|+++.++... ...++.. ++.. +... ...+.+++.+++.+|.+...-. +.
T Consensus 139 l~~-L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~~i~~------~~----- 205 (414)
T KOG0531|consen 139 LTL-LKELNLSGNLISDISGLESLKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIREIEG------LD----- 205 (414)
T ss_pred ccc-hhhheeccCcchhccCCccchhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchhcccc------hH-----
Confidence 222 455555555443332111 0000000 1111 0100 2444555555555555432111 11
Q ss_pred cccCCCccceeecCCCCCch--hhcCCCC--CCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 256 NKQQEAVEEEALLAQQNDPI--ELLCLDN--ILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 256 ~~~~l~~L~~L~L~~~~iP~--~l~~l~~--L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
.+..+..+++....+.. .+..+.. |+.+++++|.+..+|. .+..+.++..+|...+
T Consensus 206 ---~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~--~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 206 ---LLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE--GLENLKNLPVLDLSSN 265 (414)
T ss_pred ---HHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc--cccccccccccchhhc
Confidence 12222222333311111 1122222 8899999999977755 5666677777775443
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00025 Score=68.43 Aligned_cols=65 Identities=11% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCcc
Q 038586 98 SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKD 172 (353)
Q Consensus 98 ~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~ 172 (353)
+.+..+ .++ ++|++++|.++. +|. + -.+|+.|.+++ ...+|..+. ++|++|++++|.....+|..
T Consensus 46 ~r~~~~-~~l--~~L~Is~c~L~s--LP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 46 PQIEEA-RAS--GRLYIKDCDIES--LPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred HHHHHh-cCC--CEEEeCCCCCcc--cCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc
Confidence 335556 778 888888887776 562 1 23588888876 455565442 57888888887333355554
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.54 E-value=6.4e-06 Score=66.90 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
-+++.++|++ |.+. .+|+.|...|+.+ +.|+|++|.++. +|..+..++.|+.|++++ ....|.-+
T Consensus 53 ~el~~i~ls~--------N~fk-~fp~kft~kf~t~--t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 53 YELTKISLSD--------NGFK-KFPKKFTIKFPTA--TTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred ceEEEEeccc--------chhh-hCCHHHhhccchh--hhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHH
Confidence 4677888888 7776 6777776654677 888888888887 688888888888888887 66667767
Q ss_pred CCCCCCCEEEccCcccc
Q 038586 150 PEYPTLFDVEGYMASLV 166 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~ 166 (353)
..|.+|.+||..+|...
T Consensus 120 ~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARA 136 (177)
T ss_pred HHHHhHHHhcCCCCccc
Confidence 77777777777777654
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=7.4e-05 Score=48.77 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=14.8
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEecc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVD 140 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls 140 (353)
++|++++|.|+. +|+.+++|++|++|+++
T Consensus 4 ~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~ 32 (44)
T PF12799_consen 4 EELDLSNNQITD--LPPELSNLPNLETLNLS 32 (44)
T ss_dssp SEEEETSSS-SS--HGGHGTTCTTSSEEEET
T ss_pred eEEEccCCCCcc--cCchHhCCCCCCEEEec
Confidence 666777766665 45444444444444443
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=9.7e-05 Score=67.45 Aligned_cols=55 Identities=16% Similarity=0.050 Sum_probs=33.0
Q ss_pred CCCccceeecCCCCCc-----hhhcCCCCCCEEEccCCCC-CCC----CcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQQNDP-----IELLCLDNILEIVESEVEI-DSL----PDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~~~iP-----~~l~~l~~L~~L~Ls~N~l-~~i----P~~~~~~~l~~L~~Ld~ 313 (353)
..+.+.-|+|+...|- .++..++.|..|.+++|.+ .++ +..+.++.+++++-|+-
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 4455556666654333 2456778888888888887 544 22234566666666553
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.42 E-value=1.2e-05 Score=65.34 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCC
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSL 296 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~i 296 (353)
.+.....|+..+|++|.|.. +| ..+. .+.+.++.+++++ ..+|.+++.++.|+.|+++.|.+...
T Consensus 48 ~l~~~~el~~i~ls~N~fk~-fp----~kft-------~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~ 115 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKK-FP----KKFT-------IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE 115 (177)
T ss_pred HHhCCceEEEEecccchhhh-CC----HHHh-------hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc
Confidence 34445667777888888864 44 3333 1455777888877 67788888888888888888888777
Q ss_pred CcccccccCcccchhccccC
Q 038586 297 PDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 297 P~~~~~~~l~~L~~Ld~~~~ 316 (353)
|. ++..+.++..||.-.+
T Consensus 116 p~--vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 116 PR--VIAPLIKLDMLDSPEN 133 (177)
T ss_pred hH--HHHHHHhHHHhcCCCC
Confidence 77 6666666666665333
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.28 E-value=4.3e-05 Score=70.96 Aligned_cols=190 Identities=13% Similarity=0.058 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCCccccccCCcc----cccHHHHHhhccccccEEEeecCCCCCC---CCCcc-------cCCCCCCcEE
Q 038586 72 SHFKVLNLRSSNDENARRKILKG----TISSALLLCLNCMIYDIWTLVTINFGGI---PVPEF-------VGSLSKLSLN 137 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g----~lp~~l~~L~~~L~~~~L~Ls~N~l~~~---~~P~~-------~~~L~~L~~L 137 (353)
..++.|+|++ |.+.- .+.+.+.+. +.| +..++|+- ++|. ++|+. +-..++|++|
T Consensus 30 ~s~~~l~lsg--------nt~G~EAa~~i~~~L~~~-~~L--~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~l 97 (382)
T KOG1909|consen 30 DSLTKLDLSG--------NTFGTEAARAIAKVLASK-KEL--REVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKL 97 (382)
T ss_pred CceEEEeccC--------CchhHHHHHHHHHHHhhc-ccc--eeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEe
Confidence 3678888888 66532 233455666 677 77777653 2221 13432 3345677777
Q ss_pred eccC--CCC-CCC----CCCCCCCCCEEEccCcccce----ecC-ccccccCCCcCCCCccccceeccCCcCCCCCCCCC
Q 038586 138 TVDH--QGE-IIH----SVPEYPTLFDVEGYMASLVQ----ILE-KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN 205 (353)
Q Consensus 138 ~Ls~--~~~-lP~----~l~~L~~L~~L~Ls~N~l~g----~lp-~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~ 205 (353)
+||. .|+ -++ -+..++.|++|.|.+|-+.- .+. .++++..+.-......++.+..++|++.+-+.
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga--- 174 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGA--- 174 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccH---
Confidence 7777 222 111 24456777777777766531 111 11222222222222236777777773322111
Q ss_pred CCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCC--------CCchhh
Q 038586 206 NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ--------NDPIEL 277 (353)
Q Consensus 206 ~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~--------~iP~~l 277 (353)
..+-..|...+.|+.+.++.|.|. | ..+ .........+++|+.|+|.+. .+-..+
T Consensus 175 ---------~~~A~~~~~~~~leevr~~qN~I~---~----eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 175 ---------TALAEAFQSHPTLEEVRLSQNGIR---P----EGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ---------HHHHHHHHhccccceEEEeccccc---C----chh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 123345666778888999888763 2 111 111223337888999988881 223345
Q ss_pred cCCCCCCEEEccCCCC
Q 038586 278 LCLDNILEIVESEVEI 293 (353)
Q Consensus 278 ~~l~~L~~L~Ls~N~l 293 (353)
..+++|++|+++++.+
T Consensus 238 ~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLL 253 (382)
T ss_pred cccchheeeccccccc
Confidence 6678888999998888
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.27 E-value=0.00022 Score=46.57 Aligned_cols=34 Identities=9% Similarity=0.091 Sum_probs=17.3
Q ss_pred CCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccc
Q 038586 133 KLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
+|++|++++ ...+|+.+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555 4445555555555555555555544
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.13 E-value=1.5e-05 Score=80.30 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=54.3
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~ 166 (353)
|.++ .+..++.-+ ++| +.|||++|+++.. +.+..+++|++|||++ ...+|.- ...+ +|+.|.+.+|.++
T Consensus 174 N~L~-~mD~SLqll-~al--e~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 174 NRLV-LMDESLQLL-PAL--ESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALT 245 (1096)
T ss_pred hhHH-hHHHHHHHH-HHh--hhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHH
Confidence 7776 677788888 999 9999999999874 3788899999999999 6666642 2223 3888999998876
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.01 E-value=1.4e-05 Score=80.44 Aligned_cols=150 Identities=13% Similarity=0.091 Sum_probs=84.9
Q ss_pred cHHHHHhhccccccEEEeecCCCCCCCCCcccCCC-CCCcEEeccC------------CCCCCCCCCCCCCCCEEEccCc
Q 038586 97 SSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSL-SKLSLNTVDH------------QGEIIHSVPEYPTLFDVEGYMA 163 (353)
Q Consensus 97 p~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L-~~L~~L~Ls~------------~~~lP~~l~~L~~L~~L~Ls~N 163 (353)
|-+++.+ ..| ++|.|.+..+... ..+..+ .+|++|.=.+ .|.+-.++ .-.+|...+.++|
T Consensus 102 pi~ifpF-~sL--r~LElrg~~L~~~---~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN 174 (1096)
T KOG1859|consen 102 PISIFPF-RSL--RVLELRGCDLSTA---KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP-VWNKLATASFSYN 174 (1096)
T ss_pred Cceeccc-cce--eeEEecCcchhhh---hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch-hhhhHhhhhcchh
Confidence 4455666 777 8888887776542 111111 1233332222 33332221 1225666777777
Q ss_pred ccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCC
Q 038586 164 SLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILES 243 (353)
Q Consensus 164 ~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 243 (353)
.+. .+... ...+.. ++.|+|++| +++.. ..+..+++|++|||++|.+.. +|.
T Consensus 175 ~L~-~mD~S-------Lqll~a-le~LnLshN----------------k~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~ 226 (1096)
T KOG1859|consen 175 RLV-LMDES-------LQLLPA-LESLNLSHN----------------KFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQ 226 (1096)
T ss_pred hHH-hHHHH-------HHHHHH-hhhhccchh----------------hhhhh--HHHHhcccccccccccchhcc-ccc
Confidence 766 22222 233344 677888888 44422 256778888888888888864 441
Q ss_pred CCccccchhhhhcccCCCccceeecCCCCCc--hhhcCCCCCCEEEccCCCC
Q 038586 244 ERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--IELLCLDNILEIVESEVEI 293 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--~~l~~l~~L~~L~Ls~N~l 293 (353)
.... .+. |..|.+++..+- ..+.+|++|+.||+++|-|
T Consensus 227 ---l~~~--------gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 227 ---LSMV--------GCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ---cchh--------hhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhh
Confidence 1111 333 788888773332 2466788888888888877
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=7.9e-05 Score=68.05 Aligned_cols=58 Identities=7% Similarity=-0.043 Sum_probs=39.7
Q ss_pred hccCCCCEEEcccCcC-cccCCCCCccccchhhhhcccCCCccceeecCC--CCCchh---hcCCCCCCEEEccCC
Q 038586 222 SEVYDIFDVERYSSSL-DQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPIE---LLCLDNILEIVESEV 291 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l-~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~~---l~~l~~L~~L~Ls~N 291 (353)
...++|.+||||+|.. +...- ..+- +++.|+++.++. +.+|.. +...+.|.+||+.+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~----~~~~--------kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCF----QEFF--------KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHH----HHHH--------hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 4678899999998853 21111 2333 788899999988 666764 456788999886543
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.60 E-value=0.00069 Score=70.27 Aligned_cols=134 Identities=8% Similarity=0.005 Sum_probs=71.2
Q ss_pred ccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC----CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH----QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~----~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
.+| ++||+++...-...-|..++ -+|+|+.|.+++ ...+-.-..++++|..||+|+.+++ . +++
T Consensus 122 ~nL--~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-n--------l~G 190 (699)
T KOG3665|consen 122 QNL--QHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-N--------LSG 190 (699)
T ss_pred Hhh--hhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-C--------cHH
Confidence 345 77777775432221344444 467888888877 2222233456778888888877765 1 122
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhccc
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQ 258 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 258 (353)
.+.+.. |+.|.+.+= .+.. ..-..+.+|++|+.||+|..+.... + .+-...++.+.
T Consensus 191 IS~Lkn-Lq~L~mrnL----------------e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~-----~ii~qYlec~~ 247 (699)
T KOG3665|consen 191 ISRLKN-LQVLSMRNL----------------EFESYQDLIDLFNLKKLRVLDISRDKNNDD-T-----KIIEQYLECGM 247 (699)
T ss_pred Hhcccc-HHHHhccCC----------------CCCchhhHHHHhcccCCCeeeccccccccc-h-----HHHHHHHHhcc
Confidence 334444 444443332 1111 1123566788888888887765321 1 11122234444
Q ss_pred CCCccceeecCCCC
Q 038586 259 QEAVEEEALLAQQN 272 (353)
Q Consensus 259 ~l~~L~~L~L~~~~ 272 (353)
.++.|+.||.++..
T Consensus 248 ~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 248 VLPELRFLDCSGTD 261 (699)
T ss_pred cCccccEEecCCcc
Confidence 56666666666633
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.54 E-value=0.00051 Score=71.22 Aligned_cols=140 Identities=7% Similarity=0.053 Sum_probs=82.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
++..||+++. ..+...-|..++.+++.| +.|.+++=.+...++-....++++|..||+|+ ...+ ..++
T Consensus 123 nL~~LdI~G~-------~~~s~~W~~kig~~LPsL--~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS 192 (699)
T KOG3665|consen 123 NLQHLDISGS-------ELFSNGWPKKIGTMLPSL--RSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGIS 192 (699)
T ss_pred hhhhcCcccc-------chhhccHHHHHhhhCccc--ceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHh
Confidence 5667777772 223333445677666899 99998887765432344456888999999988 3333 5678
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
+|++|+.|.+.+=.+.. +-++...-.+.. |+.||+|..+..+-+ .+...--+.-..+++|+.|
T Consensus 193 ~LknLq~L~mrnLe~e~------~~~l~~LF~L~~-L~vLDIS~~~~~~~~----------~ii~qYlec~~~LpeLrfL 255 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLEFES------YQDLIDLFNLKK-LRVLDISRDKNNDDT----------KIIEQYLECGMVLPELRFL 255 (699)
T ss_pred ccccHHHHhccCCCCCc------hhhHHHHhcccC-CCeeeccccccccch----------HHHHHHHHhcccCccccEE
Confidence 88888888876655541 111111223444 666666665222111 0000001122346789999
Q ss_pred EcccCcCcc
Q 038586 231 ERYSSSLDQ 239 (353)
Q Consensus 231 ~Ls~N~l~g 239 (353)
|.|+..+++
T Consensus 256 DcSgTdi~~ 264 (699)
T KOG3665|consen 256 DCSGTDINE 264 (699)
T ss_pred ecCCcchhH
Confidence 999887764
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=1.7e-05 Score=72.26 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=33.9
Q ss_pred CCCccceeecCC-----CCCchhhcCCCCCCEEEccCCCCCCCCc-ccccccCcccchhccc
Q 038586 259 QEAVEEEALLAQ-----QNDPIELLCLDNILEIVESEVEIDSLPD-RLVFDVREFLSELDQI 314 (353)
Q Consensus 259 ~l~~L~~L~L~~-----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~-~~~~~~l~~L~~Ld~~ 314 (353)
.++.|.+|||++ ...-.++..++.|++|.++.+.. -+|. .+.+...+.|.+||..
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~-i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD-IIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC-CChHHeeeeccCcceEEEEec
Confidence 677788888877 22223566777788888877764 1122 1145666777777753
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.29 E-value=0.0033 Score=57.00 Aligned_cols=64 Identities=6% Similarity=-0.123 Sum_probs=37.8
Q ss_pred hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC------CC--Cchhh--cCCCCCCEEEccCC
Q 038586 222 SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ------QN--DPIEL--LCLDNILEIVESEV 291 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~------~~--iP~~l--~~l~~L~~L~Ls~N 291 (353)
..+++|+.||+.+|-|+-.-..-....+. .++.|++|.+.+ |. +-..+ ...++|..|-..+|
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~--------~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALC--------EWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhc--------ccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 45678999999999886321100001222 455688888776 11 11111 13478889999999
Q ss_pred CC
Q 038586 292 EI 293 (353)
Q Consensus 292 ~l 293 (353)
..
T Consensus 283 e~ 284 (388)
T COG5238 283 ER 284 (388)
T ss_pred hh
Confidence 87
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.46 E-value=0.036 Score=53.82 Aligned_cols=53 Identities=8% Similarity=-0.044 Sum_probs=33.8
Q ss_pred CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC
Q 038586 130 SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN 195 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N 195 (353)
.+.++++|++++ ...+|. + ..+|+.|.++++.-...+|.. . ... ++.|.+++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-------L--P~n-Le~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGS-------I--PEG-LEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCch-------h--hhh-hhheEccCc
Confidence 467888999998 666772 2 246999999874422344432 1 122 777888777
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.39 E-value=0.0042 Score=56.37 Aligned_cols=62 Identities=11% Similarity=-0.049 Sum_probs=28.0
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCC--------CchhhcCCCCCCEEEccCCCC
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQN--------DPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--------iP~~l~~l~~L~~L~Ls~N~l 293 (353)
.+|+.+.+..|.| -| ..+..........+.+|+.|++.+.. +-..+..++.|++|.+.+|-+
T Consensus 185 ~~lk~vki~qNgI---rp----egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 185 ENLKEVKIQQNGI---RP----EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred cCceeEEeeecCc---Cc----chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 4566666666644 23 22222222222245555555555511 111233344555555555555
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.24 E-value=0.018 Score=50.07 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-----CCCCCCC
Q 038586 74 FKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-----QGEIIHS 148 (353)
Q Consensus 74 v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-----~~~lP~~ 148 (353)
...+||++ |.+. .++. |..+ +.| ..|.|++|+|+.+ -|.--.-+++|+.|.|.+ .+.+- -
T Consensus 44 ~d~iDLtd--------Ndl~-~l~~-lp~l-~rL--~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~-p 108 (233)
T KOG1644|consen 44 FDAIDLTD--------NDLR-KLDN-LPHL-PRL--HTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLD-P 108 (233)
T ss_pred cceecccc--------cchh-hccc-CCCc-ccc--ceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcc-h
Confidence 45688888 6664 3322 4456 777 8889999998885 444444567788888887 33332 2
Q ss_pred CCCCCCCCEEEccCcccce----------ecCccccccCCCc
Q 038586 149 VPEYPTLFDVEGYMASLVQ----------ILEKDQHDEGSQN 180 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g----------~lp~~~~L~l~~~ 180 (353)
+..+++|++|.+-+|..+. .+|..++||....
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 5667888888888887652 4566666665554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.10 E-value=0.05 Score=47.41 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=11.5
Q ss_pred CCCCCCCCEEEccCcccceecC
Q 038586 149 VPEYPTLFDVEGYMASLVQILE 170 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp 170 (353)
+..++.|.+|.+++|+++..-|
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p 81 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDP 81 (233)
T ss_pred CCCccccceEEecCCcceeecc
Confidence 3445555555566665554333
No 61
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.0057 Score=33.42 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.9
Q ss_pred CCCEEEccCCCCCCCCccccccc
Q 038586 282 NILEIVESEVEIDSLPDRLVFDV 304 (353)
Q Consensus 282 ~L~~L~Ls~N~l~~iP~~~~~~~ 304 (353)
+|++||+++|++..||+ .|++
T Consensus 1 ~L~~Ldls~n~l~~ip~--~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPS--SFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGT--TTTT
T ss_pred CccEEECCCCcCEeCCh--hhcC
Confidence 58999999999999999 5654
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.011 Score=32.22 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.6
Q ss_pred cEEEeecCCCCCCCCCcccCCC
Q 038586 110 DIWTLVTINFGGIPVPEFVGSL 131 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L 131 (353)
++||+++|+++. +|+.|++|
T Consensus 3 ~~Ldls~n~l~~--ip~~~~~l 22 (22)
T PF00560_consen 3 EYLDLSGNNLTS--IPSSFSNL 22 (22)
T ss_dssp SEEEETSSEESE--EGTTTTT-
T ss_pred cEEECCCCcCEe--CChhhcCC
Confidence 889999999984 88877653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.29 E-value=0.021 Score=51.40 Aligned_cols=17 Identities=12% Similarity=0.342 Sum_probs=9.1
Q ss_pred hccCCCCEEEcccCcCc
Q 038586 222 SEVYDIFDVERYSSSLD 238 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~ 238 (353)
..+.+|..|++.+|..+
T Consensus 113 ~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhcchhhhhcccCCcc
Confidence 34455556666655443
No 64
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.15 E-value=0.026 Score=28.74 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=11.4
Q ss_pred CCCCEEEccCCCCCCCC
Q 038586 281 DNILEIVESEVEIDSLP 297 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~~iP 297 (353)
++|+.|++++|+|..+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998776
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.69 E-value=0.0034 Score=55.71 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=71.7
Q ss_pred CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC
Q 038586 71 TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS 148 (353)
Q Consensus 71 ~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~ 148 (353)
..+|+.||++. |.+. .+-..+..+ +.| ..||++.|.+.- .|..++++..++.+++.. ....|.+
T Consensus 41 ~kr~tvld~~s--------~r~v-n~~~n~s~~-t~~--~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~~~p~s 106 (326)
T KOG0473|consen 41 FKRVTVLDLSS--------NRLV-NLGKNFSIL-TRL--VRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHSQQPKS 106 (326)
T ss_pred cceeeeehhhh--------hHHH-hhccchHHH-HHH--HHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchhhCCcc
Confidence 35899999999 7776 566667778 888 999999999987 799999999999998887 8889999
Q ss_pred CCCCCCCCEEEccCcccc
Q 038586 149 VPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~ 166 (353)
++.++.++++++..|.|.
T Consensus 107 ~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccccCCcchhhhccCcch
Confidence 999999999999998865
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=0.032 Score=51.40 Aligned_cols=81 Identities=15% Similarity=0.081 Sum_probs=54.6
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
.++++|.+|++++.. ++-.-+.+|+.|++|+++.|++...+..+. . ...+|+.+
T Consensus 73 v~elDL~~N~iSdWs--------------eI~~ile~lP~l~~LNls~N~L~s~I~~lp----~--------p~~nl~~l 126 (418)
T KOG2982|consen 73 VKELDLTGNLISDWS--------------EIGAILEQLPALTTLNLSCNSLSSDIKSLP----L--------PLKNLRVL 126 (418)
T ss_pred hhhhhcccchhccHH--------------HHHHHHhcCccceEeeccCCcCCCccccCc----c--------cccceEEE
Confidence 567788888444322 233345678999999999999975554110 2 46678888
Q ss_pred ecCCC-----CCchhhcCCCCCCEEEccCCCC
Q 038586 267 LLAQQ-----NDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 267 ~L~~~-----~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
-|.+. ..-..+..++.+++|.+|.|.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 88873 3334567788888888888854
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.69 E-value=0.15 Score=46.05 Aligned_cols=82 Identities=17% Similarity=0.090 Sum_probs=53.2
Q ss_pred hhccCCCCEEEcccC--cCcccCCCCCccccchhhhhcccCCCccceeecCCC--CCch---hhcCCCCCCEEEccCCCC
Q 038586 221 LSEVYDIFDVERYSS--SLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ--NDPI---ELLCLDNILEIVESEVEI 293 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N--~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~--~iP~---~l~~l~~L~~L~Ls~N~l 293 (353)
+-.|++|+.|++|.| ++++.++ .... .+++|++++++++ .++. .+..+.+|..|++.+|..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~----vl~e--------~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLE----VLAE--------KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred CCCcchhhhhcccCCcccccccce----ehhh--------hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence 445778899999999 5555444 3333 5688888888882 2233 345667788888888877
Q ss_pred CCCC--cccccccCcccchhccc
Q 038586 294 DSLP--DRLVFDVREFLSELDQI 314 (353)
Q Consensus 294 ~~iP--~~~~~~~l~~L~~Ld~~ 314 (353)
..+- ....|.-++.|+.||-.
T Consensus 129 ~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 129 TNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cccccHHHHHHHHhhhhcccccc
Confidence 3331 11256677778887754
No 68
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.19 E-value=0.19 Score=28.27 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=17.4
Q ss_pred CCCCCEEEccCCCCCCCCc
Q 038586 280 LDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|+.|+|++|+|..+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4789999999999999988
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.19 E-value=0.19 Score=28.27 Aligned_cols=19 Identities=37% Similarity=0.482 Sum_probs=17.4
Q ss_pred CCCCCEEEccCCCCCCCCc
Q 038586 280 LDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|+.|+|++|+|..+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4789999999999999988
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=0.049 Score=49.79 Aligned_cols=79 Identities=13% Similarity=0.019 Sum_probs=62.4
Q ss_pred hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCch-----hhcCCCCCCEEEccCCCC-CC
Q 038586 222 SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPI-----ELLCLDNILEIVESEVEI-DS 295 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~-----~l~~l~~L~~L~Ls~N~l-~~ 295 (353)
.+|+.|..|.||-|+|+..-| +. .++.|++|+|....|+. -+.++++|+.|.|..|.= +.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p------l~--------rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP------LQ--------RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HhcccceeEEeeccccccchh------HH--------HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccc
Confidence 467889999999999986544 44 89999999999977764 356889999999999998 66
Q ss_pred CCcc---cccccCcccchhccc
Q 038586 296 LPDR---LVFDVREFLSELDQI 314 (353)
Q Consensus 296 iP~~---~~~~~l~~L~~Ld~~ 314 (353)
-+.. .++..+++|+.||..
T Consensus 104 ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred cchhHHHHHHHHcccchhccCc
Confidence 6542 256778888888853
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.30 E-value=1.8 Score=34.29 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=5.0
Q ss_pred cCCCCCCcEEeccC
Q 038586 128 VGSLSKLSLNTVDH 141 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~ 141 (353)
|..+++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 34444444444433
No 72
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.02 E-value=0.62 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=16.5
Q ss_pred CCCCEEEccCCCCCCCCc
Q 038586 281 DNILEIVESEVEIDSLPD 298 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~~iP~ 298 (353)
++|+.|++++|+|..+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 468999999999999998
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.81 E-value=3.6 Score=32.44 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=20.0
Q ss_pred ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCC-CCCCCCCCCEEEcc
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIH-SVPEYPTLFDVEGY 161 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~-~l~~L~~L~~L~Ls 161 (353)
+.| +.+.+..+ +... -...|.++++++.+.+.. ...++. .+..+++|+.+++.
T Consensus 35 ~~l--~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 35 TSL--KSINFPNN-LTSI-GDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TT---SEEEESST-TSCE--TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred ccc--cccccccc-cccc-ceeeeecccccccccccccccccccccccccccccccccC
Confidence 455 55555443 3332 122344444555555543 222222 23334555555443
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.91 E-value=0.089 Score=48.13 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc--ccCCCCCCcEEeccC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE--FVGSLSKLSLNTVDH 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~--~~~~L~~L~~L~Ls~ 141 (353)
-+..|.|+- |.++ ++.+ +..+ +.| ++|+|..|.|.. +.+ .+.++++|+.|+|..
T Consensus 42 ~lEVLsLSv--------NkIs-sL~p-l~rC-trL--kElYLRkN~I~s--ldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 42 LLEVLSLSV--------NKIS-SLAP-LQRC-TRL--KELYLRKNCIES--LDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred cceeEEeec--------cccc-cchh-HHHH-HHH--HHHHHHhccccc--HHHHHHHhcCchhhhHhhcc
Confidence 345555555 5554 3322 5555 666 666666666654 222 234566666666655
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=76.10 E-value=0.058 Score=48.10 Aligned_cols=72 Identities=7% Similarity=0.005 Sum_probs=50.0
Q ss_pred ccc-HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCc
Q 038586 95 TIS-SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEK 171 (353)
Q Consensus 95 ~lp-~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~ 171 (353)
.+| .++... ... +.||++.|++.. +-..|.-++.|..|+++. ...+|..++++..++++++..|..+ ..|.
T Consensus 32 ~~~v~ei~~~-kr~--tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~ 105 (326)
T KOG0473|consen 32 EIPVREIASF-KRV--TVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPK 105 (326)
T ss_pred ccchhhhhcc-cee--eeehhhhhHHHh--hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCc
Confidence 444 245555 778 999999998876 456666777777777776 6667777777777777777776655 4444
Q ss_pred c
Q 038586 172 D 172 (353)
Q Consensus 172 ~ 172 (353)
+
T Consensus 106 s 106 (326)
T KOG0473|consen 106 S 106 (326)
T ss_pred c
Confidence 4
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.21 E-value=2.6 Score=23.97 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.3
Q ss_pred CCCCCEEEccCCCCCCCCc
Q 038586 280 LDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~ 298 (353)
+++|+.|++++|+|..|..
T Consensus 1 L~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 1 LTNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CCccCEEECCCCccceecC
Confidence 4689999999999966544
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=72.43 E-value=2.3 Score=23.24 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=10.7
Q ss_pred CCCCCEEEccCcccce
Q 038586 152 YPTLFDVEGYMASLVQ 167 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g 167 (353)
+++|++|++++|.+++
T Consensus 1 ~~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 1 NPNLETLDLSNNQITD 16 (24)
T ss_dssp -TT-SEEE-TSSBEHH
T ss_pred CCCCCEEEccCCcCCH
Confidence 4688999999998764
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.07 E-value=4.2 Score=23.33 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=12.4
Q ss_pred CCCCEEEccCCCCC
Q 038586 281 DNILEIVESEVEID 294 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~ 294 (353)
++|++|||++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 57999999999994
No 79
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.85 E-value=5 Score=47.62 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=37.9
Q ss_pred EccCCCCCCCCcccccccCcccchhccccCCCccccccccccccc
Q 038586 287 VESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 287 ~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
||++|+|..||+. .|..++.|+.|+...+++.|+|...+-..|.
T Consensus 1 DLSnN~LstLp~g-~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL 44 (2740)
T TIGR00864 1 DISNNKISTIEEG-ICANLCNLSEIDLSGNPFECDCGLARLPRWA 44 (2740)
T ss_pred CCCCCcCCccChH-HhccCCCceEEEeeCCccccccccHHHHHHH
Confidence 6889999888874 7888999999999999999999987777773
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=21.96 E-value=66 Score=17.68 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=9.5
Q ss_pred CCCCCEEEccCCC
Q 038586 280 LDNILEIVESEVE 292 (353)
Q Consensus 280 l~~L~~L~Ls~N~ 292 (353)
+++|++|+++++.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3678888888775
Done!