Query 038586
Match_columns 353
No_of_seqs 299 out of 2982
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 5E-35 1.7E-39 273.8 16.9 253 24-316 2-278 (313)
2 3rgz_A Protein brassinosteroid 100.0 4.2E-31 1.4E-35 275.4 16.3 273 23-342 7-315 (768)
3 4fcg_A Uncharacterized protein 100.0 3.3E-31 1.1E-35 249.6 10.1 264 21-313 20-308 (328)
4 4eco_A Uncharacterized protein 100.0 1.1E-30 3.7E-35 266.8 10.2 277 25-343 27-454 (636)
5 4ecn_A Leucine-rich repeat pro 100.0 2.5E-29 8.4E-34 263.7 13.9 253 22-316 263-654 (876)
6 3rgz_A Protein brassinosteroid 99.9 2.9E-25 1E-29 231.3 16.8 217 73-316 419-714 (768)
7 1ogq_A PGIP-2, polygalacturona 99.9 5.6E-24 1.9E-28 198.7 12.8 211 72-317 76-302 (313)
8 2o6q_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 188.0 17.5 217 58-327 3-226 (270)
9 2z66_A Variable lymphocyte rec 99.9 2.5E-23 8.5E-28 193.0 15.6 238 59-330 6-272 (306)
10 3zyi_A Leucine-rich repeat-con 99.9 3.8E-23 1.3E-27 202.4 15.0 225 62-330 56-314 (452)
11 1ozn_A Reticulon 4 receptor; N 99.9 7E-23 2.4E-27 188.2 14.1 210 72-330 32-249 (285)
12 3v47_A TOLL-like receptor 5B a 99.9 1.2E-22 4.2E-27 198.2 15.6 237 59-313 7-378 (455)
13 3zyj_A Leucine-rich repeat-con 99.9 2.3E-22 7.9E-27 196.2 16.4 225 62-330 45-303 (440)
14 1xku_A Decorin; proteoglycan, 99.9 5E-21 1.7E-25 179.5 22.8 232 59-318 30-305 (330)
15 2ft3_A Biglycan; proteoglycan, 99.9 2E-21 6.9E-26 182.4 19.3 231 60-317 33-305 (332)
16 2z80_A TOLL-like receptor 2, v 99.9 2.1E-22 7.3E-27 190.7 9.8 235 59-328 29-323 (353)
17 2z62_A TOLL-like receptor 4, v 99.9 1.1E-21 3.9E-26 179.3 13.6 208 72-328 28-246 (276)
18 3oja_B Anopheles plasmodium-re 99.9 1.4E-21 4.9E-26 197.9 15.3 206 90-313 85-331 (597)
19 1p9a_G Platelet glycoprotein I 99.9 5E-21 1.7E-25 176.9 15.0 203 73-330 11-219 (290)
20 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-21 1.3E-25 194.5 14.8 208 73-331 351-570 (606)
21 3o6n_A APL1; leucine-rich repe 99.8 8.3E-21 2.9E-25 182.0 15.7 83 219-315 242-327 (390)
22 4eco_A Uncharacterized protein 99.8 2E-21 6.9E-26 198.3 11.3 225 89-342 192-477 (636)
23 3m19_A Variable lymphocyte rec 99.8 1.2E-20 4.2E-25 170.3 14.8 182 59-294 4-192 (251)
24 2id5_A Lingo-1, leucine rich r 99.8 1E-20 3.4E-25 186.1 15.0 243 62-330 13-344 (477)
25 4fcg_A Uncharacterized protein 99.8 6.6E-21 2.3E-25 179.1 12.9 192 72-298 104-318 (328)
26 3rfs_A Internalin B, repeat mo 99.8 7.3E-20 2.5E-24 167.2 16.2 169 73-293 42-217 (272)
27 3o6n_A APL1; leucine-rich repe 99.8 5.1E-20 1.8E-24 176.5 15.2 223 73-324 70-357 (390)
28 3oja_B Anopheles plasmodium-re 99.8 5.4E-20 1.8E-24 186.3 15.7 216 86-322 105-361 (597)
29 3t6q_A CD180 antigen; protein- 99.8 1.4E-19 4.9E-24 182.9 17.5 151 72-242 33-196 (606)
30 3t6q_A CD180 antigen; protein- 99.8 3.1E-20 1.1E-24 187.7 12.4 226 72-331 325-572 (606)
31 3v47_A TOLL-like receptor 5B a 99.8 1.6E-19 5.6E-24 176.0 17.0 213 85-316 35-357 (455)
32 4ecn_A Leucine-rich repeat pro 99.8 2.7E-20 9.1E-25 195.3 11.6 230 90-342 435-717 (876)
33 2id5_A Lingo-1, leucine rich r 99.8 8.6E-20 2.9E-24 179.4 13.7 212 75-315 14-257 (477)
34 1wwl_A Monocyte differentiatio 99.8 1.7E-20 5.7E-25 174.9 7.9 103 73-195 64-183 (312)
35 2z7x_B TOLL-like receptor 1, v 99.8 4.7E-20 1.6E-24 183.1 11.4 111 72-197 21-150 (520)
36 2z81_A CD282 antigen, TOLL-lik 99.8 3.2E-20 1.1E-24 185.3 9.4 188 59-295 3-210 (549)
37 2o6q_A Variable lymphocyte rec 99.8 6.3E-19 2.2E-23 160.7 17.1 185 61-293 17-217 (270)
38 3oja_A Leucine-rich immune mol 99.8 4.2E-20 1.4E-24 182.8 9.7 195 73-318 35-249 (487)
39 1ozn_A Reticulon 4 receptor; N 99.8 5.9E-19 2E-23 161.9 16.3 178 72-297 56-242 (285)
40 1p9a_G Platelet glycoprotein I 99.8 6.8E-19 2.3E-23 162.6 15.8 173 72-294 31-208 (290)
41 1ziw_A TOLL-like receptor 3; i 99.8 1.4E-18 4.7E-23 178.1 19.7 73 90-167 59-135 (680)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.4E-19 1.2E-23 179.0 14.8 112 72-197 52-181 (562)
43 3rfs_A Internalin B, repeat mo 99.8 2.1E-18 7E-23 157.6 18.6 198 100-341 37-242 (272)
44 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-19 3.7E-24 169.7 10.2 191 110-319 37-250 (317)
45 2z7x_B TOLL-like receptor 1, v 99.8 9.2E-20 3.1E-24 181.0 9.3 163 129-330 321-493 (520)
46 1ziw_A TOLL-like receptor 3; i 99.8 5.7E-19 1.9E-23 180.9 15.4 227 73-332 382-636 (680)
47 3m19_A Variable lymphocyte rec 99.8 2.5E-18 8.6E-23 155.0 17.1 180 110-330 17-204 (251)
48 4glp_A Monocyte differentiatio 99.8 2.4E-19 8.3E-24 166.7 10.2 185 90-317 101-305 (310)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.6E-19 1.2E-23 178.8 11.9 158 150-330 350-522 (562)
50 2o6s_A Variable lymphocyte rec 99.8 4.9E-19 1.7E-23 155.0 11.1 181 59-307 6-190 (208)
51 1wwl_A Monocyte differentiatio 99.8 8.1E-20 2.8E-24 170.2 5.9 217 59-314 30-282 (312)
52 2z63_A TOLL-like receptor 4, v 99.8 1.9E-19 6.6E-24 180.2 9.0 212 73-331 305-544 (570)
53 3vq2_A TLR4, TOLL-like recepto 99.8 1.8E-19 6.1E-24 182.1 8.8 191 72-312 32-235 (606)
54 2ft3_A Biglycan; proteoglycan, 99.8 2.5E-18 8.6E-23 161.2 14.5 211 73-316 34-274 (332)
55 3j0a_A TOLL-like receptor 5; m 99.8 5.7E-19 2E-23 185.7 10.0 218 90-330 300-571 (844)
56 3o53_A Protein LRIM1, AGAP0063 99.8 9.2E-19 3.2E-23 163.4 10.1 190 110-316 13-224 (317)
57 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7.3E-23 159.7 12.3 190 72-294 52-261 (306)
58 3j0a_A TOLL-like receptor 5; m 99.8 3.7E-18 1.3E-22 179.5 15.2 219 73-316 74-372 (844)
59 3zyi_A Leucine-rich repeat-con 99.8 1.1E-17 3.6E-22 163.7 15.5 181 72-293 99-302 (452)
60 3zyj_A Leucine-rich repeat-con 99.7 1.5E-17 5.1E-22 162.1 16.4 181 72-293 88-291 (440)
61 3bz5_A Internalin-J, INLJ; leu 99.7 5.1E-17 1.7E-21 159.4 19.6 76 73-167 43-120 (457)
62 3oja_A Leucine-rich immune mol 99.7 4.7E-18 1.6E-22 168.1 11.6 186 95-316 21-224 (487)
63 2xwt_C Thyrotropin receptor; s 99.7 6.6E-18 2.2E-22 151.0 11.3 189 72-312 31-232 (239)
64 2z81_A CD282 antigen, TOLL-lik 99.7 4.4E-18 1.5E-22 169.8 10.8 199 72-330 310-522 (549)
65 2z62_A TOLL-like receptor 4, v 99.7 2E-17 6.9E-22 150.9 14.0 178 72-298 52-242 (276)
66 4g8a_A TOLL-like receptor 4; l 99.7 2.8E-17 9.5E-22 165.9 16.2 208 73-331 372-592 (635)
67 3cvr_A Invasion plasmid antige 99.7 1.1E-17 3.6E-22 168.2 12.6 194 61-306 49-254 (571)
68 1h6u_A Internalin H; cell adhe 99.7 3.6E-17 1.2E-21 152.1 15.3 182 73-298 42-234 (308)
69 1xku_A Decorin; proteoglycan, 99.7 1.1E-16 3.9E-21 149.7 18.2 195 72-313 100-326 (330)
70 2z63_A TOLL-like receptor 4, v 99.7 2.6E-17 8.9E-22 164.7 14.6 178 72-298 347-536 (570)
71 3e6j_A Variable lymphocyte rec 99.7 4.3E-17 1.5E-21 145.2 14.2 156 50-293 13-171 (229)
72 1o6v_A Internalin A; bacterial 99.7 1.6E-16 5.5E-21 155.9 17.1 79 72-167 68-148 (466)
73 4fmz_A Internalin; leucine ric 99.7 2.5E-16 8.5E-21 148.1 17.6 209 72-317 66-298 (347)
74 2z80_A TOLL-like receptor 2, v 99.7 4.6E-18 1.6E-22 160.8 5.5 193 64-295 27-236 (353)
75 3bz5_A Internalin-J, INLJ; leu 99.7 4.1E-16 1.4E-20 153.0 19.5 192 92-297 30-249 (457)
76 1jl5_A Outer protein YOPM; leu 99.7 2E-16 6.8E-21 155.0 16.6 183 90-305 183-382 (454)
77 4fmz_A Internalin; leucine ric 99.7 2.2E-16 7.6E-21 148.4 16.0 211 72-317 88-322 (347)
78 4g8a_A TOLL-like receptor 4; l 99.7 3.4E-17 1.2E-21 165.3 11.0 173 73-293 53-236 (635)
79 3g06_A SSPH2 (leucine-rich rep 99.7 4.6E-16 1.6E-20 157.9 19.0 72 225-317 221-295 (622)
80 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.4E-21 151.7 13.3 203 60-313 9-233 (350)
81 4ezg_A Putative uncharacterize 99.7 1.5E-16 5E-21 138.2 13.1 150 101-294 41-194 (197)
82 1jl5_A Outer protein YOPM; leu 99.7 1.5E-17 5.2E-22 163.0 7.5 204 72-315 11-246 (454)
83 1o6v_A Internalin A; bacterial 99.7 5E-16 1.7E-20 152.3 16.3 149 72-239 90-279 (466)
84 2xot_A Amphoterin-induced prot 99.7 7.1E-16 2.4E-20 146.5 14.8 180 76-324 22-207 (361)
85 4glp_A Monocyte differentiatio 99.7 1.7E-16 5.9E-21 147.4 10.0 195 73-316 65-282 (310)
86 2ast_B S-phase kinase-associat 99.7 8.6E-18 2.9E-22 157.3 1.1 218 59-314 36-280 (336)
87 3g06_A SSPH2 (leucine-rich rep 99.7 9.5E-16 3.2E-20 155.6 16.0 226 48-314 13-269 (622)
88 1h6t_A Internalin B; cell adhe 99.7 4.9E-16 1.7E-20 143.3 12.7 166 73-298 47-217 (291)
89 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-15 3.6E-20 135.3 14.1 151 75-296 14-169 (220)
90 4b8c_D Glucose-repressible alc 99.6 8.4E-18 2.9E-22 173.9 -0.5 195 21-270 125-325 (727)
91 1h6u_A Internalin H; cell adhe 99.6 7.1E-16 2.4E-20 143.4 12.6 156 72-270 63-226 (308)
92 2v9t_B SLIT homolog 2 protein 99.6 2.3E-15 7.9E-20 133.1 14.7 144 110-293 14-164 (220)
93 1h6t_A Internalin B; cell adhe 99.6 2.3E-15 7.8E-20 138.8 15.2 170 90-314 34-208 (291)
94 2v9t_B SLIT homolog 2 protein 99.6 2.8E-15 9.5E-20 132.6 15.0 145 75-270 14-161 (220)
95 2xwt_C Thyrotropin receptor; s 99.6 6.1E-16 2.1E-20 138.1 10.7 169 72-292 55-237 (239)
96 3e6j_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 133.0 14.9 96 219-327 82-180 (229)
97 2xot_A Amphoterin-induced prot 99.6 7.4E-16 2.5E-20 146.4 11.1 163 60-270 18-198 (361)
98 2o6s_A Variable lymphocyte rec 99.6 4.3E-15 1.5E-19 129.8 14.2 148 110-297 10-165 (208)
99 2ca6_A RAN GTPase-activating p 99.6 4E-17 1.4E-21 156.1 0.9 202 73-317 33-314 (386)
100 2v70_A SLIT-2, SLIT homolog 2 99.6 4.4E-15 1.5E-19 131.3 13.5 159 110-330 14-177 (220)
101 1xeu_A Internalin C; cellular 99.6 1.1E-15 3.7E-20 139.0 9.0 165 73-298 20-189 (263)
102 3cvr_A Invasion plasmid antige 99.6 1.3E-15 4.4E-20 153.1 10.1 156 72-280 80-253 (571)
103 1m9s_A Internalin B; cell inva 99.6 4E-15 1.4E-19 150.7 13.8 166 72-297 43-213 (605)
104 3goz_A Leucine-rich repeat-con 99.6 2E-16 7E-21 150.2 3.9 83 73-167 23-123 (362)
105 1m9s_A Internalin B; cell inva 99.6 1.5E-14 5.1E-19 146.5 14.6 170 90-314 31-205 (605)
106 4ezg_A Putative uncharacterize 99.6 1.7E-14 5.8E-19 125.1 10.9 144 73-271 45-191 (197)
107 3goz_A Leucine-rich repeat-con 99.5 1.7E-16 5.8E-21 150.7 -2.5 83 73-166 52-151 (362)
108 1w8a_A SLIT protein; signaling 99.5 1.9E-14 6.6E-19 124.4 10.7 122 90-242 18-143 (192)
109 2ast_B S-phase kinase-associat 99.5 1E-15 3.4E-20 143.2 1.4 180 73-291 71-282 (336)
110 1dce_A Protein (RAB geranylger 99.5 9.2E-17 3.1E-21 161.6 -6.3 158 90-298 359-550 (567)
111 2ell_A Acidic leucine-rich nuc 99.5 1.9E-14 6.5E-19 121.3 8.4 137 105-298 24-164 (168)
112 1w8a_A SLIT protein; signaling 99.5 9.9E-14 3.4E-18 119.9 12.0 105 110-242 11-119 (192)
113 4b8c_D Glucose-repressible alc 99.5 1.2E-14 4E-19 150.4 6.2 156 105-305 173-339 (727)
114 2ca6_A RAN GTPase-activating p 99.5 7.8E-16 2.7E-20 147.2 -2.6 189 72-296 60-318 (386)
115 2o6r_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 117.9 10.6 132 60-242 7-141 (177)
116 2je0_A Acidic leucine-rich nuc 99.5 3.9E-14 1.3E-18 117.0 7.5 128 105-269 17-148 (149)
117 4ay9_X Follicle-stimulating ho 99.5 1.3E-13 4.5E-18 130.2 10.5 188 76-316 13-212 (350)
118 1xeu_A Internalin C; cellular 99.5 8.3E-14 2.8E-18 126.5 7.9 159 102-314 17-180 (263)
119 2ell_A Acidic leucine-rich nuc 99.5 7.5E-14 2.6E-18 117.6 6.8 130 72-239 24-161 (168)
120 1z7x_W Ribonuclease inhibitor; 99.4 2.3E-15 8E-20 146.7 -3.2 57 259-317 339-409 (461)
121 1z7x_W Ribonuclease inhibitor; 99.4 1.1E-14 3.6E-19 142.0 0.3 202 73-294 143-411 (461)
122 2wfh_A SLIT homolog 2 protein 99.4 4.7E-13 1.6E-17 115.8 10.8 118 90-239 20-140 (193)
123 2wfh_A SLIT homolog 2 protein 99.4 8.6E-13 2.9E-17 114.2 12.0 124 110-293 13-138 (193)
124 2je0_A Acidic leucine-rich nuc 99.4 8.6E-14 3E-18 114.9 3.1 125 72-234 17-149 (149)
125 1dce_A Protein (RAB geranylger 99.4 1.2E-12 4.2E-17 131.5 9.6 152 92-288 397-567 (567)
126 1ds9_A Outer arm dynein; leuci 99.3 2.8E-15 9.4E-20 130.2 -9.2 130 73-242 19-157 (198)
127 2o6r_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 104.2 13.3 128 110-297 10-141 (177)
128 1a9n_A U2A', U2A'; complex (nu 99.3 2.6E-12 9E-17 109.1 6.5 54 259-314 86-148 (176)
129 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-11 3.8E-16 105.2 9.0 107 101-238 16-126 (176)
130 1ds9_A Outer arm dynein; leuci 99.3 2.9E-14 1E-18 123.7 -7.3 148 100-312 14-180 (198)
131 3g39_A Variable lymphocyte rec 99.2 4.4E-11 1.5E-15 101.1 11.0 77 75-166 12-91 (170)
132 3sb4_A Hypothetical leucine ri 99.2 1.7E-11 6E-16 114.5 8.1 190 99-313 43-304 (329)
133 2r9u_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 99.3 11.1 77 75-166 15-94 (174)
134 3ogk_B Coronatine-insensitive 99.2 1.5E-12 5.2E-17 130.7 -2.6 61 102-166 110-177 (592)
135 2r9u_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 96.1 10.7 75 212-298 44-122 (174)
136 3g39_A Variable lymphocyte rec 99.1 6.5E-10 2.2E-14 93.9 10.3 53 110-166 12-67 (170)
137 2ifg_A High affinity nerve gro 99.0 2.4E-10 8.2E-15 107.2 7.3 105 60-198 8-116 (347)
138 3ogk_B Coronatine-insensitive 99.0 2.5E-11 8.5E-16 121.8 0.6 192 96-313 212-443 (592)
139 2ifg_A High affinity nerve gro 98.9 1.9E-09 6.5E-14 101.0 9.5 102 110-239 11-117 (347)
140 2p1m_B Transport inhibitor res 98.9 3.6E-11 1.2E-15 120.6 -6.2 52 259-313 287-345 (594)
141 3un9_A NLR family member X1; l 98.7 6E-10 2.1E-14 106.1 -3.9 66 218-295 176-253 (372)
142 2p1m_B Transport inhibitor res 98.6 1.3E-09 4.5E-14 109.2 -2.6 205 101-330 102-345 (594)
143 3sb4_A Hypothetical leucine ri 98.6 8.2E-08 2.8E-12 89.4 9.1 174 103-312 100-327 (329)
144 4fdw_A Leucine rich hypothetic 98.5 4.3E-07 1.5E-11 87.1 11.2 186 73-298 158-362 (401)
145 3un9_A NLR family member X1; l 98.5 9E-09 3.1E-13 97.9 -0.8 160 72-273 72-251 (372)
146 4fdw_A Leucine rich hypothetic 98.4 1.5E-06 5.2E-11 83.3 12.9 202 73-315 136-354 (401)
147 2ra8_A Uncharacterized protein 98.3 1.4E-07 4.9E-12 89.3 2.1 183 72-294 107-320 (362)
148 3rw6_A Nuclear RNA export fact 98.0 1.5E-06 5.2E-11 78.5 2.7 20 59-78 77-96 (267)
149 3rw6_A Nuclear RNA export fact 97.9 2.5E-06 8.7E-11 77.1 2.1 83 222-316 167-261 (267)
150 2ra8_A Uncharacterized protein 97.8 6.7E-06 2.3E-10 77.7 1.7 179 72-292 139-341 (362)
151 1io0_A Tropomodulin; LRR prote 97.7 3.7E-06 1.3E-10 71.6 -1.3 113 149-293 32-163 (185)
152 1io0_A Tropomodulin; LRR prote 97.6 1.9E-06 6.4E-11 73.5 -4.3 113 99-238 31-164 (185)
153 4fs7_A Uncharacterized protein 96.8 0.0072 2.5E-07 57.1 11.1 194 98-313 156-373 (394)
154 4fs7_A Uncharacterized protein 96.6 0.0057 1.9E-07 57.8 8.6 78 218-311 313-393 (394)
155 3rfe_A Platelet glycoprotein I 96.4 0.0039 1.3E-07 49.6 5.4 49 281-330 31-79 (130)
156 4h09_A Hypothetical leucine ri 95.6 0.12 4.2E-06 48.0 12.4 59 220-290 281-342 (379)
157 3e4g_A ATP synthase subunit S, 95.6 0.0081 2.8E-07 50.4 3.5 62 219-292 79-150 (176)
158 4gt6_A Cell surface protein; l 95.4 0.23 7.8E-06 46.6 13.5 53 259-313 309-364 (394)
159 4h09_A Hypothetical leucine ri 95.3 0.28 9.5E-06 45.6 13.8 61 95-161 59-121 (379)
160 3e4g_A ATP synthase subunit S, 95.1 0.0021 7.1E-08 54.1 -1.6 80 73-164 62-150 (176)
161 4gt6_A Cell surface protein; l 94.6 0.15 5E-06 47.9 9.7 122 148-312 260-384 (394)
162 3rfe_A Platelet glycoprotein I 94.5 0.061 2.1E-06 42.5 5.8 56 76-166 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 92.5 0.03 1E-06 47.8 0.8 67 219-293 92-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 77.8 1.1 3.7E-05 38.0 2.4 15 279-293 96-110 (197)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5e-35 Score=273.80 Aligned_cols=253 Identities=21% Similarity=0.281 Sum_probs=212.3
Q ss_pred cCcHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCCCccccccCCcc--cc
Q 038586 24 RCIDEEKEALLTFEQSPVDEYGALSSWG-REDDKRNCCK--WRGVCCNNTT--SHFKVLNLRSSNDENARRKILKG--TI 96 (353)
Q Consensus 24 ~~~~~e~~aLl~~k~~~~~~~~~~~~W~-~~~~~~~~C~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~l~g--~l 96 (353)
.|.++|++||++||+++.+|. .+.+|. +.| ||. |.||+|+..+ ++|+.|++++ +.++| .+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~----~C~~~w~gv~C~~~~~~~~l~~L~L~~--------~~l~~~~~~ 68 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTD----CCNRTWLGVLCDTDTQTYRVNNLDLSG--------LNLPKPYPI 68 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSC----TTTTCSTTEEECCSSSCCCEEEEEEEC--------CCCSSCEEC
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCC----CCcCCCcceEeCCCCCCceEEEEECCC--------CCccCCccc
Confidence 599999999999999998876 788994 455 998 9999998654 7999999999 99999 99
Q ss_pred cHHHHHhhccccccEEEeec-CCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccceecCcc
Q 038586 97 SSALLLCLNCMIYDIWTLVT-INFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQILEKD 172 (353)
Q Consensus 97 p~~l~~L~~~L~~~~L~Ls~-N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~ 172 (353)
|+.+.++ ++| ++|++++ |.+.+. +|..|+++++|++|++++ .+.+|..++++++|++|++++|.+++.+|..
T Consensus 69 ~~~l~~l-~~L--~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 69 PSSLANL-PYL--NFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CGGGGGC-TTC--SEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ChhHhCC-CCC--CeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH
Confidence 9999999 999 9999995 999988 999999999999999998 5588999999999999999999999888776
Q ss_pred ccccCCCcCCCCccccceeccCCcCC-CCCCCC--C------CCccccceeeeCCcchhccCCCCEEEcccCcCcccCCC
Q 038586 173 QHDEGSQNGQQGAEAEAVCIQHNQAN-DIPCSS--N------NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILES 243 (353)
Q Consensus 173 ~~L~l~~~~~l~~~l~~l~l~~N~l~-~i~~~~--~------~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~ 243 (353)
+..+.. ++++++++|+++ .+|... . .++...++++.+|..+..++ |++|++++|++++.+|
T Consensus 145 -------~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~- 214 (313)
T 1ogq_A 145 -------ISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS- 214 (313)
T ss_dssp -------GGGCTT-CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG-
T ss_pred -------HhcCCC-CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC-
Confidence 566666 777777777665 344211 1 12233477788888888887 9999999999988888
Q ss_pred CCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccC
Q 038586 244 ERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 244 ~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
..++ .+++|+.|++++ ...++.+..+++|++|++++|++ +.+|. .+..++.|+.|+...+
T Consensus 215 ---~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 215 ---VLFG--------SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFN 278 (313)
T ss_dssp ---GGCC--------TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSS
T ss_pred ---HHHh--------cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCC
Confidence 7788 899999999998 33444578889999999999999 79999 8999999999986543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=4.2e-31 Score=275.37 Aligned_cols=273 Identities=15% Similarity=0.178 Sum_probs=210.4
Q ss_pred ccCcHHHHHHHHHHHhCCCCCCCCCCCCC-CCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCccc---ccH
Q 038586 23 IRCIDEEKEALLTFEQSPVDEYGALSSWG-REDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGT---ISS 98 (353)
Q Consensus 23 ~~~~~~e~~aLl~~k~~~~~~~~~~~~W~-~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~---lp~ 98 (353)
..+.++|++||++||+++.||. .+++|. ++| ||.|.||+|+ .++|++|+|++ +.+.|. +|+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~----~C~w~gv~C~--~~~v~~L~L~~--------~~l~g~~~~l~~ 71 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKN----PCTFDGVTCR--DDKVTSIDLSS--------KPLNVGFSAVSS 71 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSC----GGGSTTEEEE--TTEEEEEECTT--------SCCCEEHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCC----CcCCcceEEC--CCcEEEEECCC--------CCcCCccCccCh
Confidence 4447889999999999999888 889994 566 9999999998 58999999999 899998 999
Q ss_pred HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCC--CCCCCCCCCEEEccCcccceecCccc
Q 038586 99 ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIH--SVPEYPTLFDVEGYMASLVQILEKDQ 173 (353)
Q Consensus 99 ~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~--~l~~L~~L~~L~Ls~N~l~g~lp~~~ 173 (353)
++.++ ++| +.++++.|.+.. +|+.++.+++|++|+|++ .+.+|. .++++++|++|++++|.+.+.+|..
T Consensus 72 ~l~~L-~~L--~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~- 145 (768)
T 3rgz_A 72 SLLSL-TGL--ESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS- 145 (768)
T ss_dssp HTTTC-TTC--CEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC-
T ss_pred hHhcc-Ccc--cccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH-
Confidence 99999 999 999998888765 678999999999999999 677888 8999999999999999998766643
Q ss_pred cccCCCc-CCCCccccceeccCCcCCCCC------CCCCCCccc-----cceeeeCCcchhccCCCCEEEcccCcCcccC
Q 038586 174 HDEGSQN-GQQGAEAEAVCIQHNQANDIP------CSSNNNVQT-----VEFEGEMEHSLSEVYDIFDVERYSSSLDQIL 241 (353)
Q Consensus 174 ~L~l~~~-~~l~~~l~~l~l~~N~l~~i~------~~~~~~l~~-----~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~ 241 (353)
. ..+.. ++++++++|+++... ......++. ..+++..|. ..+++|++|++++|++++.+
T Consensus 146 ------~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~ 216 (768)
T 3rgz_A 146 ------GGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGI 216 (768)
T ss_dssp ------SCCCCTT-CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCC
T ss_pred ------HhccCCC-CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCC
Confidence 2 33333 555555555443321 111112221 256665553 78899999999999999888
Q ss_pred CCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccC
Q 038586 242 ESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 242 p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
| . ++ ++++|++|++++ +.+|..+..+++|++|++++|.+ +.+|. . .++.|++|+...+
T Consensus 217 ~----~-l~--------~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~--~l~~L~~L~L~~n 279 (768)
T 3rgz_A 217 P----F-LG--------DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L--PLKSLQYLSLAEN 279 (768)
T ss_dssp C----B-CT--------TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C--CCTTCCEEECCSS
T ss_pred c----c-cc--------cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c--ccCCCCEEECcCC
Confidence 8 5 78 899999999998 56788899999999999999999 78887 3 6778888875432
Q ss_pred C--------Ccccccccccccc--cccccCCChHHH
Q 038586 317 P--------RDEECGKLQAVAW--EEEMGPLPVEFL 342 (353)
Q Consensus 317 ~--------~~~~c~~l~~~~~--~~~~~~lp~~~~ 342 (353)
. ....|.+++.+.. +.+.|.+|..+.
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~ 315 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence 1 1123566666653 556778887653
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.3e-31 Score=249.60 Aligned_cols=264 Identities=11% Similarity=0.106 Sum_probs=201.1
Q ss_pred ccccCcHHHHHHHHHHHhCCC-CCCCCCCCCC-CCCCCCCCccccceEec--------CCCCcEEEEEcCCCCCcccccc
Q 038586 21 IIIRCIDEEKEALLTFEQSPV-DEYGALSSWG-REDDKRNCCKWRGVCCN--------NTTSHFKVLNLRSSNDENARRK 90 (353)
Q Consensus 21 ~~~~~~~~e~~aLl~~k~~~~-~~~~~~~~W~-~~~~~~~~C~w~gv~c~--------~~~~~v~~L~L~~~~~~~~~~~ 90 (353)
....+..+|++||++||+.+. ++.+....|. ..+...++|.|.|+.|. ....+|+.|+|++ +
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~--------n 91 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS--------V 91 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES--------S
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC--------C
Confidence 445567789999999999884 6665667783 11222459999999995 2346899999999 8
Q ss_pred CCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCccccee
Q 038586 91 ILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQI 168 (353)
Q Consensus 91 ~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~ 168 (353)
.++ .+|+.++++ ++| ++|+|++|.++. +|..++++++|++|+|++ ...+|..++++++|++|++++|++.+.
T Consensus 92 ~l~-~lp~~l~~l-~~L--~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 92 PLP-QFPDQAFRL-SHL--QHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp CCS-SCCSCGGGG-TTC--SEEEEESSCCCC--CCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred Cch-hcChhhhhC-CCC--CEEECCCCCccc--hhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccc
Confidence 988 899999999 999 999999999994 899999999999999999 668999999999999999999999988
Q ss_pred cCccc-cccC-CCcCCCCccccceeccCCcCCCCCCC--CCCCccccceee----eCCcchhccCCCCEEEcccCcCccc
Q 038586 169 LEKDQ-HDEG-SQNGQQGAEAEAVCIQHNQANDIPCS--SNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLDQI 240 (353)
Q Consensus 169 lp~~~-~L~l-~~~~~l~~~l~~l~l~~N~l~~i~~~--~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~ 240 (353)
+|..- ...+ ..+..+.. ++++++++|+++.+|.. ....++.+.+.+ .+|..++.+++|++|++++|++.+.
T Consensus 166 ~p~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~ 244 (328)
T 4fcg_A 166 LPEPLASTDASGEHQGLVN-LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN 244 (328)
T ss_dssp CCSCSEEEC-CCCEEESTT-CCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB
T ss_pred cChhHhhccchhhhccCCC-CCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh
Confidence 88750 0000 01123666 88899999977766632 223333333322 3666778888888888888888777
Q ss_pred CCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 241 LESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
+| ..++ .+++|+.|++++ +.+|..+..+++|++|++++|++ +.+|+ .++.++.++.++.
T Consensus 245 ~p----~~~~--------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 245 YP----PIFG--------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp CC----CCTT--------CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred hH----HHhc--------CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 77 7777 788888888877 67777788888888888888877 88888 7777777776654
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=1.1e-30 Score=266.84 Aligned_cols=277 Identities=16% Similarity=0.167 Sum_probs=213.4
Q ss_pred CcHHHHHHHHHHHhCCCCCCCC--------CCCCC-CCCCCCCCccc---cceEecCCCCcEEEEEcCCCCCccccccCC
Q 038586 25 CIDEEKEALLTFEQSPVDEYGA--------LSSWG-REDDKRNCCKW---RGVCCNNTTSHFKVLNLRSSNDENARRKIL 92 (353)
Q Consensus 25 ~~~~e~~aLl~~k~~~~~~~~~--------~~~W~-~~~~~~~~C~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l 92 (353)
....|++||.++++++.++... ..+|. +.| ||.| .||+|+.. |||++|+|++ +++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~----~c~w~~~~GV~C~~~-~~V~~L~L~~--------~~l 93 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKE----LDMWGAQPGVSLNSN-GRVTGLSLEG--------FGA 93 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSC----GGGTTCCTTEEECTT-CCEEEEECTT--------SCC
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCC----cccccCCCCeEEcCC-CCEEEEEecC--------ccc
Confidence 3457999999999998755322 23694 556 9999 99999765 8999999999 999
Q ss_pred cccccHHHHHhhccccccEEEeecCCC-----------------------------------------------------
Q 038586 93 KGTISSALLLCLNCMIYDIWTLVTINF----------------------------------------------------- 119 (353)
Q Consensus 93 ~g~lp~~l~~L~~~L~~~~L~Ls~N~l----------------------------------------------------- 119 (353)
+|.+|++++++ ++| ++|+|++|.+
T Consensus 94 ~g~lp~~l~~L-~~L--~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l 170 (636)
T 4eco_A 94 SGRVPDAIGQL-TEL--EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170 (636)
T ss_dssp EEEECGGGGGC-TTC--CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCT
T ss_pred CCcCChHHhcC-ccc--eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCc
Confidence 99999999999 999 9999999854
Q ss_pred -------------------------CCCCCCcccCCCCCCcEEeccC---CCC-----------------CCCCCC--CC
Q 038586 120 -------------------------GGIPVPEFVGSLSKLSLNTVDH---QGE-----------------IIHSVP--EY 152 (353)
Q Consensus 120 -------------------------~~~~~P~~~~~L~~L~~L~Ls~---~~~-----------------lP~~l~--~L 152 (353)
++ +|+.++++++|++|+|++ .+. +|..++ ++
T Consensus 171 ~~~~~~~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l 248 (636)
T 4eco_A 171 QQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL 248 (636)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC
T ss_pred cccccccccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc
Confidence 33 788899999999999999 443 999999 99
Q ss_pred CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCc-CCC--CCCCC--------CCC-----ccccceeee
Q 038586 153 PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQ-AND--IPCSS--------NNN-----VQTVEFEGE 216 (353)
Q Consensus 153 ~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~-l~~--i~~~~--------~~~-----l~~~~l~g~ 216 (353)
++|++|++++|++.|.+|.. ++.+.. ++++++++|+ ++. +|... ... +...+++ .
T Consensus 249 ~~L~~L~L~~n~l~~~~p~~-------l~~l~~-L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 249 KDLTDVEVYNCPNLTKLPTF-------LKALPE-MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp TTCCEEEEECCTTCSSCCTT-------TTTCSS-CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred CCCCEEEecCCcCCccChHH-------HhcCCC-CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 99999999999999988866 555555 6666666665 443 33110 011 2222566 7
Q ss_pred CCc--chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCC-CCEEEccC
Q 038586 217 MEH--SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDN-ILEIVESE 290 (353)
Q Consensus 217 ~p~--~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~-L~~L~Ls~ 290 (353)
+|. .++++++|++|++++|+++|.+| .++ .+++|+.|++++ ..+|..+..+++ |++|++++
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-----~~~--------~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-----AFG--------SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-----CCE--------EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-----hhC--------CCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 888 89999999999999999998887 466 788999999998 778888999999 99999999
Q ss_pred CCCCCCCcccccccCc--ccchhccccCCCc----c----------cccccccccccc-cccCCChHHHH
Q 038586 291 VEIDSLPDRLVFDVRE--FLSELDQIAEPRD----E----------ECGKLQAVAWEE-EMGPLPVEFLS 343 (353)
Q Consensus 291 N~l~~iP~~~~~~~l~--~L~~Ld~~~~~~~----~----------~c~~l~~~~~~~-~~~~lp~~~~~ 343 (353)
|.+..+|. .++.++ .|+.|+...+... . .+.+++.+.... ....+|...+.
T Consensus 387 N~l~~lp~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~ 454 (636)
T 4eco_A 387 NKLKYIPN--IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454 (636)
T ss_dssp SCCSSCCS--CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH
T ss_pred CcCcccch--hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc
Confidence 99999999 676654 8888886544321 1 233555555422 23478877654
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.5e-29 Score=263.72 Aligned_cols=253 Identities=14% Similarity=0.164 Sum_probs=197.0
Q ss_pred cccCcHHHHHHHHHHHhCCCCCCCCCCCCCC-C---CCCCCCccc------------cceEecCCCCcEEEEEcCCCCCc
Q 038586 22 IIRCIDEEKEALLTFEQSPVDEYGALSSWGR-E---DDKRNCCKW------------RGVCCNNTTSHFKVLNLRSSNDE 85 (353)
Q Consensus 22 ~~~~~~~e~~aLl~~k~~~~~~~~~~~~W~~-~---~~~~~~C~w------------~gv~c~~~~~~v~~L~L~~~~~~ 85 (353)
.+.+..+|++||++||+++.+| +|.. . +...++|.| .||+|+. .+||++|+|++
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~---- 332 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG---- 332 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT----
T ss_pred ccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc----
Confidence 4456778999999999999876 5632 1 111223999 9999976 57999999999
Q ss_pred cccccCCcccccHHHHHhhccccccEEEe-ecCCCCCC------------------------------------------
Q 038586 86 NARRKILKGTISSALLLCLNCMIYDIWTL-VTINFGGI------------------------------------------ 122 (353)
Q Consensus 86 ~~~~~~l~g~lp~~l~~L~~~L~~~~L~L-s~N~l~~~------------------------------------------ 122 (353)
+++.|.+|+++++| ++| ++|+| ++|.++|.
T Consensus 333 ----~~L~G~ip~~l~~L-~~L--~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 333 ----FGAKGRVPDAIGQL-TEL--KVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp ----TCCEEEECGGGGGC-TTC--CEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred ----CCCCCcCchHHhcc-ccc--eEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 99999999999999 999 99999 77754332
Q ss_pred ---------------------------------CCCcccCCCCCCcEEeccC---CC-----------------CCCCCC
Q 038586 123 ---------------------------------PVPEFVGSLSKLSLNTVDH---QG-----------------EIIHSV 149 (353)
Q Consensus 123 ---------------------------------~~P~~~~~L~~L~~L~Ls~---~~-----------------~lP~~l 149 (353)
.+|..|+++++|++|+|++ .+ .+|..+
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence 0688899999999999999 44 299999
Q ss_pred C--CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCc-CCC--CCCC---------CCCCc-----cc
Q 038586 150 P--EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQ-AND--IPCS---------SNNNV-----QT 210 (353)
Q Consensus 150 ~--~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~-l~~--i~~~---------~~~~l-----~~ 210 (353)
+ ++++|++|+|++|++.|.+|.. ++.+.. ++.|++++|+ ++. +|.. ..+.+ ..
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~-------l~~L~~-L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDF-------LYDLPE-LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGG-------GGGCSS-CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred hhccCCCCCEEECcCCCCCccChHH-------HhCCCC-CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 8 9999999999999999888865 555555 6666666664 442 2210 01122 22
Q ss_pred cceeeeCCc--chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCC-CC
Q 038586 211 VEFEGEMEH--SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDN-IL 284 (353)
Q Consensus 211 ~~l~g~~p~--~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~-L~ 284 (353)
..++ .+|. .++++++|++|++++|+++ .+| .++ .+++|+.|++++ ..+|..+..+++ |+
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-----~~~--------~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-----AFG--------TNVKLTDLKLDYNQIEEIPEDFCAFTDQVE 622 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-----CCC--------TTSEESEEECCSSCCSCCCTTSCEECTTCC
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-----hhc--------CCCcceEEECcCCccccchHHHhhccccCC
Confidence 2566 7888 8999999999999999987 666 567 889999999998 778888888888 99
Q ss_pred EEEccCCCCCCCCcccccccCcc--cchhccccC
Q 038586 285 EIVESEVEIDSLPDRLVFDVREF--LSELDQIAE 316 (353)
Q Consensus 285 ~L~Ls~N~l~~iP~~~~~~~l~~--L~~Ld~~~~ 316 (353)
+|++++|.+..+|. .+..++. |+.|+...+
T Consensus 623 ~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 623 GLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp EEECCSSCCCSCCS--CCCTTCSSCEEEEECCSS
T ss_pred EEECcCCCCCcCch--hhhccccCCCCEEECcCC
Confidence 99999999998998 6766654 888886544
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.9e-25 Score=231.28 Aligned_cols=217 Identities=18% Similarity=0.132 Sum_probs=156.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
+++.|++++ |.++|.+|..+..+ ++| ++|++++|.+++. +|..++.+++|++|++++ .+.+|..+
T Consensus 419 ~L~~L~Ls~--------N~l~~~~p~~l~~l-~~L--~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 419 ELVSLHLSF--------NYLSGTIPSSLGSL-SKL--RDLKLWLNMLEGE-IPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp TCCEEECCS--------SEEESCCCGGGGGC-TTC--CEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CCCEEECcC--------CcccCcccHHHhcC-CCC--CEEECCCCcccCc-CCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 567777777 66666666666666 666 6666666666655 566666666666666665 44555556
Q ss_pred CCCCCCCEEEccCcccceecC-------ccccccCCCc----------CCCCccccceeccCCcCC-CCCCCCC------
Q 038586 150 PEYPTLFDVEGYMASLVQILE-------KDQHDEGSQN----------GQQGAEAEAVCIQHNQAN-DIPCSSN------ 205 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp-------~~~~L~l~~~----------~~l~~~l~~l~l~~N~l~-~i~~~~~------ 205 (353)
+++++|++|++++|+++|.+| .+++|++++| ..+.. ++.+++++|+++ .+|....
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccCCcCChHHhcccchh
Confidence 666666666666666554333 3345555544 33444 677888888776 3553110
Q ss_pred -----------------------------------------------CCccccceeeeCCcchhccCCCCEEEcccCcCc
Q 038586 206 -----------------------------------------------NNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 206 -----------------------------------------------~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 238 (353)
.++....+.|.+|..++.+++|++|++++|+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 012225678889999999999999999999999
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
|.+| ..++ +++.|+.|++++ |.+|..++.+++|++|||++|++ |.+|. .++.++.|+.||.
T Consensus 646 g~ip----~~l~--------~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~l 711 (768)
T 3rgz_A 646 GYIP----KEIG--------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTMLTEIDL 711 (768)
T ss_dssp SCCC----GGGG--------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG--GGGGCCCCSEEEC
T ss_pred ccCC----HHHh--------ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh--HHhCCCCCCEEEC
Confidence 9999 8999 999999999999 89999999999999999999999 89999 8999999999987
Q ss_pred ccC
Q 038586 314 IAE 316 (353)
Q Consensus 314 ~~~ 316 (353)
..+
T Consensus 712 s~N 714 (768)
T 3rgz_A 712 SNN 714 (768)
T ss_dssp CSS
T ss_pred cCC
Confidence 543
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=5.6e-24 Score=198.69 Aligned_cols=211 Identities=15% Similarity=0.138 Sum_probs=174.7
Q ss_pred CcEEEEEcC-CCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCC
Q 038586 72 SHFKVLNLR-SSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~-~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~ 147 (353)
.+++.|+++ . |.+.|.+|..+.++ ++| ++|++++|.+++. +|..|.++++|++|++++ .+.+|.
T Consensus 76 ~~L~~L~L~~~--------n~l~~~~p~~l~~l-~~L--~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 76 PYLNFLYIGGI--------NNLVGPIPPAIAKL-TQL--HYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp TTCSEEEEEEE--------TTEESCCCGGGGGC-TTC--SEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred CCCCeeeCCCC--------CcccccCChhHhcC-CCC--CEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 367888888 5 78899999999999 999 9999999999987 899999999999999999 668999
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCC-CCCCC------CCCccccceeeeCCcc
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQAND-IPCSS------NNNVQTVEFEGEMEHS 220 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~-i~~~~------~~~l~~~~l~g~~p~~ 220 (353)
.++++++|++|++++|+++|.+|.. +..+...++++++++|+++. +|... ..++....+++..|..
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~-------l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~ 216 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDS-------YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGG-------GGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGG
T ss_pred HHhcCCCCCeEECcCCcccCcCCHH-------HhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHH
Confidence 9999999999999999999888865 55554226666666666652 33210 1122333788889999
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CC
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DS 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~ 295 (353)
+..+++|++|++++|++++.+| . ++ .+++|++|++++ +.+|..+..+++|++|++++|++ +.
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~----~-~~--------~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLG----K-VG--------LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGG----G-CC--------CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred HhcCCCCCEEECCCCceeeecC----c-cc--------ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 9999999999999999998777 3 66 789999999998 68899999999999999999999 89
Q ss_pred CCcccccccCcccchhccccCC
Q 038586 296 LPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
+|. . +.++.|+.++...++
T Consensus 284 ip~--~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 284 IPQ--G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCC--S-TTGGGSCGGGTCSSS
T ss_pred CCC--C-ccccccChHHhcCCC
Confidence 998 4 778888888775554
No 8
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5e-23 Score=188.03 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=180.0
Q ss_pred CCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEE
Q 038586 58 NCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLN 137 (353)
Q Consensus 58 ~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L 137 (353)
++|.|.|+.|.-. ++++.+++++ ++++ .+|..+ . ..+ ++|++++|.+++. .+..|.++++|++|
T Consensus 3 ~~C~~~~~~C~c~-~~~~~l~~~~--------~~l~-~ip~~~--~-~~l--~~L~l~~n~l~~~-~~~~~~~l~~L~~L 66 (270)
T 2o6q_A 3 ALCKKDGGVCSCN-NNKNSVDCSS--------KKLT-AIPSNI--P-ADT--KKLDLQSNKLSSL-PSKAFHRLTKLRLL 66 (270)
T ss_dssp CCBGGGTCSBEEE-TTTTEEECTT--------SCCS-SCCSCC--C-TTC--SEEECCSSCCSCC-CTTSSSSCTTCCEE
T ss_pred ccCCCCCCCCEeC-CCCCEEEccC--------CCCC-ccCCCC--C-CCC--CEEECcCCCCCee-CHHHhcCCCCCCEE
Confidence 4999999998532 3567899999 8887 577643 2 678 9999999999986 55689999999999
Q ss_pred eccC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee
Q 038586 138 TVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE 214 (353)
Q Consensus 138 ~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~ 214 (353)
++++ ...+|.. +.++++|++|++++|++.+..+.. +..+.. ++++++++| +++
T Consensus 67 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~ 122 (270)
T 2o6q_A 67 YLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-------FDQLVN-LAELRLDRN----------------QLK 122 (270)
T ss_dssp ECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT-------TTTCSS-CCEEECCSS----------------CCC
T ss_pred ECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH-------cccccC-CCEEECCCC----------------ccC
Confidence 9998 6677765 578999999999999998655555 566777 999999999 666
Q ss_pred eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEccC
Q 038586 215 GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVESE 290 (353)
Q Consensus 215 g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~Ls~ 290 (353)
+..+..|..+++|++|++++|++++..+ ..++ .+++|++|++++ ..+|. .+..+++|++|++++
T Consensus 123 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 123 SLPPRVFDSLTKLTYLSLGYNELQSLPK----GVFD--------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred eeCHHHhCcCcCCCEEECCCCcCCccCH----hHcc--------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCC
Confidence 6667778999999999999999987666 5677 899999999998 55554 588899999999999
Q ss_pred CCCCCCCcccccccCcccchhccccCCCccccccccc
Q 038586 291 VEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQA 327 (353)
Q Consensus 291 N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~ 327 (353)
|++..+|+. .|..++.|+.|+...++..+.|..+..
T Consensus 191 N~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 226 (270)
T 2o6q_A 191 NQLKRVPEG-AFDSLEKLKMLQLQENPWDCTCNGIIY 226 (270)
T ss_dssp SCCSCCCTT-TTTTCTTCCEEECCSSCBCCSSSSSHH
T ss_pred CcCCcCCHH-HhccccCCCEEEecCCCeeCCCccHHH
Confidence 999777662 588899999999999999999975433
No 9
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=2.5e-23 Score=193.04 Aligned_cols=238 Identities=12% Similarity=0.080 Sum_probs=174.0
Q ss_pred CccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHH-HHHhhccccccEEEeecCCCCCCC-CCcc
Q 038586 59 CCKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSA-LLLCLNCMIYDIWTLVTINFGGIP-VPEF 127 (353)
Q Consensus 59 ~C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~-l~~L~~~L~~~~L~Ls~N~l~~~~-~P~~ 127 (353)
.|.|.+|.|+.. ..+++.|++++ |.++ .+|+. +.++ ++| ++|++++|.++... .|..
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~--------n~l~-~i~~~~~~~l-~~L--~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELES--------NKLQ-SLPHGVFDKL-TQL--TKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCS--------SCCC-CCCTTTTTTC-TTC--SEEECCSSCCCEEEEEEHH
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCC--------CccC-ccCHhHhhcc-ccC--CEEECCCCccCcccCcccc
Confidence 378999999642 24789999999 7777 56653 5677 888 88888888887420 2566
Q ss_pred cCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecC-ccccccCCCcCCCCccccceeccCCcCCCCCCC-
Q 038586 128 VGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILE-KDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS- 203 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp-~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~- 203 (353)
+..+++|++|++++ ...+|..+..+++|++|++++|++++..+ .. +..+.. ++++++++|++..++..
T Consensus 74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~~l~~-L~~L~l~~n~l~~~~~~~ 145 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-------FLSLRN-LIYLDISHTHTRVAFNGI 145 (306)
T ss_dssp HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTT-------TTTCTT-CCEEECTTSCCEECSTTT
T ss_pred cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchh-------hhhccC-CCEEECCCCcCCccchhh
Confidence 66788888888887 55677777778888888888887764322 12 333344 55555555554432211
Q ss_pred --CCCCcccc-----ceee-eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CC
Q 038586 204 --SNNNVQTV-----EFEG-EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QN 272 (353)
Q Consensus 204 --~~~~l~~~-----~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~ 272 (353)
....++.+ .+++ .+|..+..+++|++|++++|++++..| ..++ .+++|+.|++++ ..
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP----TAFN--------SLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECTTSCCSB
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH----HHhc--------CCCCCCEEECCCCccCc
Confidence 11222222 5555 578889999999999999999998888 7888 899999999998 33
Q ss_pred Cc-hhhcCCCCCCEEEccCCCC-CCCCcccccccC-cccchhccccCCCcccccccccccc
Q 038586 273 DP-IELLCLDNILEIVESEVEI-DSLPDRLVFDVR-EFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 273 iP-~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l-~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+| ..+..+++|++|++++|++ +..|. .+..+ +.|+.|+...++..+.|...+...|
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~ 272 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 272 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSS--SCCCCCTTCCEEECTTCCEECSGGGHHHHHH
T ss_pred cChhhccCcccCCEeECCCCCCcccCHH--HHHhhhccCCEEEccCCCeecccChHHHHHH
Confidence 44 4688899999999999999 67777 78887 4899999999998888886555555
No 10
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.8e-23 Score=202.44 Aligned_cols=225 Identities=13% Similarity=0.126 Sum_probs=181.1
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC
Q 038586 62 WRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS 132 (353)
Q Consensus 62 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~ 132 (353)
|..|.|... ..+++.|+|++ |++++..|..|.++ ++| ++|+|++|.+++. .|..|.+++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~i~~~-~~~~~~~l~ 123 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLME--------NNIQMIQADTFRHL-HHL--EVLQLGRNSIRQI-EVGAFNGLA 123 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCEE-CTTTTTTCT
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcC--------CcCceECHHHcCCC-CCC--CEEECCCCccCCc-ChhhccCcc
Confidence 567777532 24789999999 99998778889999 999 9999999999997 678899999
Q ss_pred CCcEEeccC--CCCCCCC-CCCCCCCCEEEccCccccee-------cCccccccCCCc-----------CCCCcccccee
Q 038586 133 KLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQN-----------GQQGAEAEAVC 191 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~-----------~~l~~~l~~l~ 191 (353)
+|++|+|++ ...+|+. +.++++|++|++++|++++. ++.+++|+++++ ..+.. +++|+
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~ 202 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLN 202 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-CCEEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-CCEEE
Confidence 999999999 6666654 88899999999999998853 344556666542 22333 55666
Q ss_pred ccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC-
Q 038586 192 IQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ- 270 (353)
Q Consensus 192 l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~- 270 (353)
+++| .+++ +| .+..+++|++|++++|++++..| ..+. ++++|+.|++++
T Consensus 203 L~~n----------------~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~L~~n 252 (452)
T 3zyi_A 203 LGMC----------------NIKD-MP-NLTPLVGLEELEMSGNHFPEIRP----GSFH--------GLSSLKKLWVMNS 252 (452)
T ss_dssp CTTS----------------CCSS-CC-CCTTCTTCCEEECTTSCCSEECG----GGGT--------TCTTCCEEECTTS
T ss_pred CCCC----------------cccc-cc-cccccccccEEECcCCcCcccCc----cccc--------CccCCCEEEeCCC
Confidence 6666 3432 23 47788999999999999999888 8888 999999999998
Q ss_pred ---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 271 ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 271 ---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+..|..+..+++|++|+|++|++..+|+. .|..+++|+.|+...++..++|...+...|
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~ 314 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLHHNPWNCDCDILWLAWW 314 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-SSTTCTTCCEEECCSSCEECSTTTHHHHHH
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChH-HhccccCCCEEEccCCCcCCCCCchHHHHH
Confidence 33466788999999999999999766652 688899999999999999999987665555
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=7e-23 Score=188.22 Aligned_cols=210 Identities=12% Similarity=0.114 Sum_probs=178.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCC-CC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEI-IH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~l-P~ 147 (353)
.+++.|++++ +.+++..+..+..+ ++| ++|++++|.+++. .|..|.++++|++|++++ .+.+ |.
T Consensus 32 ~~l~~L~l~~--------n~i~~~~~~~~~~~-~~L--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 32 AASQRIFLHG--------NRISHVPAASFRAC-RNL--TILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp TTCSEEECTT--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred CCceEEEeeC--------CcCCccCHHHcccC-CCC--CEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHH
Confidence 4789999999 89986666678888 999 9999999999986 688899999999999998 4555 66
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.+..+++|++|++++|.+++..|.. +..+.. ++++++++| ++++..+..++.+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGL-------FRGLAA-LQYLYLQDN----------------ALQALPDDTFRDLGNL 155 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCCCCTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhH-------hhCCcC-CCEEECCCC----------------cccccCHhHhccCCCc
Confidence 7899999999999999999776766 677777 999999999 6665556678899999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCCCCcccccc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDSLPDRLVFD 303 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~ 303 (353)
++|++++|++++..+ ..++ .+++|+.|++++ +..|..+..+++|++|++++|++..+|+. .+.
T Consensus 156 ~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~ 222 (285)
T 1ozn_A 156 THLFLHGNRISSVPE----RAFR--------GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALA 222 (285)
T ss_dssp CEEECCSSCCCEECT----TTTT--------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHT
T ss_pred cEEECCCCcccccCH----HHhc--------CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-Hcc
Confidence 999999999987666 6677 899999999998 34477889999999999999999666651 588
Q ss_pred cCcccchhccccCCCcccccccccccc
Q 038586 304 VREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 304 ~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
.++.|+.|+...++..+.|...+...|
T Consensus 223 ~l~~L~~L~l~~N~~~c~~~~~~~~~~ 249 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCDCRARPLWAW 249 (285)
T ss_dssp TCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred cCcccCEEeccCCCccCCCCcHHHHHH
Confidence 999999999999999888987666555
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.2e-22 Score=198.20 Aligned_cols=237 Identities=14% Similarity=0.078 Sum_probs=142.4
Q ss_pred Cccccc--eEecCCC--------CcEEEEEcCCCCC----------------ccccccCCccccc-HHHHHhhccccccE
Q 038586 59 CCKWRG--VCCNNTT--------SHFKVLNLRSSND----------------ENARRKILKGTIS-SALLLCLNCMIYDI 111 (353)
Q Consensus 59 ~C~w~g--v~c~~~~--------~~v~~L~L~~~~~----------------~~~~~~~l~g~lp-~~l~~L~~~L~~~~ 111 (353)
.|.|.+ |.|+... .+++.|+|+++.+ ...+.|.+.+.++ ..|..+ ++| ++
T Consensus 7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l-~~L--~~ 83 (455)
T 3v47_A 7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL-SSL--II 83 (455)
T ss_dssp CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTC-TTC--CE
T ss_pred eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccc-ccC--CE
Confidence 455554 6665321 4577777777655 2334456655664 357777 888 88
Q ss_pred EEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC--CCCCCCCCEEEccCcccceec--------CccccccCC
Q 038586 112 WTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS--VPEYPTLFDVEGYMASLVQIL--------EKDQHDEGS 178 (353)
Q Consensus 112 L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~--l~~L~~L~~L~Ls~N~l~g~l--------p~~~~L~l~ 178 (353)
|+|++|.+++. .|..|+++++|++|++++ .+.+|.. ++++++|++|++++|++++.. +.+++|+++
T Consensus 84 L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 84 LKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp EECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred EeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 88888888876 688888888888888888 3334443 778888888888888876533 345666666
Q ss_pred CcCCCC-------------------------------------------ccccceeccCCcCCC-CCC------------
Q 038586 179 QNGQQG-------------------------------------------AEAEAVCIQHNQAND-IPC------------ 202 (353)
Q Consensus 179 ~~~~l~-------------------------------------------~~l~~l~l~~N~l~~-i~~------------ 202 (353)
++.... ..++++++++|++.. ++.
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence 653211 014555555554431 000
Q ss_pred ----C-------------------------CCCCcc-----ccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccc
Q 038586 203 ----S-------------------------SNNNVQ-----TVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTED 248 (353)
Q Consensus 203 ----~-------------------------~~~~l~-----~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~ 248 (353)
+ ....++ ...+++..|..++.+++|++|++++|++++..| ..
T Consensus 243 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~ 318 (455)
T 3v47_A 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD----NA 318 (455)
T ss_dssp EEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT----TT
T ss_pred eEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh----hH
Confidence 0 001122 223445566677777777777777777777666 55
Q ss_pred cchhhhhcccCCCccceeecCC---C-CCchhhcCCCCCCEEEccCCCC-CCCCcccccccCcccchhcc
Q 038586 249 HGDAAIQNKQQEAVEEEALLAQ---Q-NDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 249 ~~~~~~~~~~~l~~L~~L~L~~---~-~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++ .+++|+.|++++ + ..|..+..+++|++|++++|++ +..|. .|..++.|+.|+.
T Consensus 319 ~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L 378 (455)
T 3v47_A 319 FW--------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ--SFLGLPNLKELAL 378 (455)
T ss_dssp TT--------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT--TTTTCTTCCEEEC
T ss_pred hc--------CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh--hccccccccEEEC
Confidence 66 566666666665 2 2244455566666666666666 33344 5555555555554
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=2.3e-22 Score=196.21 Aligned_cols=225 Identities=13% Similarity=0.133 Sum_probs=179.2
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC
Q 038586 62 WRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS 132 (353)
Q Consensus 62 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~ 132 (353)
|..|.|... ...++.|+|++ |.+++..+..|.++ ++| ++|+|++|.+++. .|..|.+++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~i~~i-~~~~~~~l~ 112 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHE--------NQIQIIKVNSFKHL-RHL--EILQLSRNHIRTI-EIGAFNGLA 112 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCS--------CCCCEECTTTTSSC-SSC--CEEECCSSCCCEE-CGGGGTTCS
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccC--------CcCCeeCHHHhhCC-CCC--CEEECCCCcCCcc-ChhhccCCc
Confidence 567777531 24678899999 89987777889999 999 9999999999986 667899999
Q ss_pred CCcEEeccC--CCCCCC-CCCCCCCCCEEEccCccccee-------cCccccccCCCc-----------CCCCcccccee
Q 038586 133 KLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQN-----------GQQGAEAEAVC 191 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~-----------~~l~~~l~~l~ 191 (353)
+|++|+|++ ...+|. .+..+++|++|++++|.+.+. ++.+++|+++++ ..+.. +++|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~ 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLN 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-CCEEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-cCeec
Confidence 999999998 666765 588999999999999998753 344555655542 22333 55666
Q ss_pred ccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC-
Q 038586 192 IQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ- 270 (353)
Q Consensus 192 l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~- 270 (353)
+++| .++ .+| .+..+++|++|++++|++++..| ..+. .+++|+.|++++
T Consensus 192 L~~n----------------~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~L~~n 241 (440)
T 3zyj_A 192 LAMC----------------NLR-EIP-NLTPLIKLDELDLSGNHLSAIRP----GSFQ--------GLMHLQKLWMIQS 241 (440)
T ss_dssp CTTS----------------CCS-SCC-CCTTCSSCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECTTC
T ss_pred CCCC----------------cCc-ccc-ccCCCcccCEEECCCCccCccCh----hhhc--------cCccCCEEECCCC
Confidence 6666 333 233 47788999999999999999888 8888 999999999999
Q ss_pred ---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 271 ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 271 ---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+..|..+..+++|++|+|++|++..+|.. .|..++.|+.|+...++..++|...+...|
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~ 303 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLHHNPWNCNCDILWLSWW 303 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-TTSSCTTCCEEECCSSCEECSSTTHHHHHH
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChh-HhccccCCCEEEcCCCCccCCCCchHHHHH
Confidence 33356788999999999999999766652 688999999999999999999987666555
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5e-21 Score=179.49 Aligned_cols=232 Identities=15% Similarity=0.127 Sum_probs=185.7
Q ss_pred CccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC
Q 038586 59 CCKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG 129 (353)
Q Consensus 59 ~C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~ 129 (353)
.|.|..+.|... ..+++.|++++ |.+++..+..+.++ ++| ++|++++|.+++. .|..|+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~ 97 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQN--------NKITEIKDGDFKNL-KNL--HTLILINNKISKI-SPGAFA 97 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCS--------SCCCCBCTTTTTTC-TTC--CEEECCSSCCCCB-CTTTTT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCC--------CcCCEeChhhhccC-CCC--CEEECCCCcCCee-CHHHhc
Confidence 478999999631 24688999999 89986666688999 999 9999999999996 689999
Q ss_pred CCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce-------ecCccccccCCCcCC------------CCcccc
Q 038586 130 SLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQNGQ------------QGAEAE 188 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~~~------------l~~~l~ 188 (353)
++++|++|++++ ...+|..+. ++|++|++++|.+.+ .++.+++|+++++.. +.. ++
T Consensus 98 ~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~-L~ 174 (330)
T 1xku_A 98 PLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LS 174 (330)
T ss_dssp TCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CC
T ss_pred CCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-cC
Confidence 999999999998 778888776 799999999999874 345678888877644 234 78
Q ss_pred ceeccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcc
Q 038586 189 AVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVE 263 (353)
Q Consensus 189 ~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L 263 (353)
++++++|+++.+|......++.+ .+++..|..+..+++|++|++++|++++..+ ..++ .+++|
T Consensus 175 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L 242 (330)
T 1xku_A 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----GSLA--------NTPHL 242 (330)
T ss_dssp EEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----TTGG--------GSTTC
T ss_pred EEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----hhcc--------CCCCC
Confidence 89999999998886554544443 4566678889999999999999999988777 6777 89999
Q ss_pred ceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCccccccc------CcccchhccccCCC
Q 038586 264 EEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDV------REFLSELDQIAEPR 318 (353)
Q Consensus 264 ~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~------l~~L~~Ld~~~~~~ 318 (353)
++|++++ ..+|..+..+++|++|++++|++..+|.. .|.. .+.++.++...++.
T Consensus 243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~-~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSN-DFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTT-SSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChh-hcCCcccccccccccceEeecCcc
Confidence 9999998 78888899999999999999999777652 3433 24555666554443
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2e-21 Score=182.40 Aligned_cols=231 Identities=14% Similarity=0.131 Sum_probs=180.5
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCC
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGS 130 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~ 130 (353)
|.|..+.|... ..+++.|++++ |.+++..|..+.++ ++| ++|++++|.+++. .|..|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~ 100 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQN--------NDISELRKDDFKGL-QHL--YALVLVNNKISKI-HEKAFSP 100 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCEE-CGGGSTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCC--------CcCCccCHhHhhCC-CCC--cEEECCCCccCcc-CHhHhhC
Confidence 78999999632 24789999999 89986667789999 999 9999999999997 6889999
Q ss_pred CCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce-------ecCccccccCCCcCCCC----------cccccee
Q 038586 131 LSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ-------ILEKDQHDEGSQNGQQG----------AEAEAVC 191 (353)
Q Consensus 131 L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g-------~lp~~~~L~l~~~~~l~----------~~l~~l~ 191 (353)
+++|++|++++ ...+|..+. ++|++|++++|.+.+ .++.+++|+++++.... ..++.++
T Consensus 101 l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 101 LRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp CTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred cCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence 99999999998 778888776 899999999998764 34566777877764421 0267888
Q ss_pred ccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 192 IQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 192 l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
+++|+++.+|......++.+ .+++..|..+..+++|++|++++|++++..+ ..++ .+++|+.|
T Consensus 179 l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 246 (332)
T 2ft3_A 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN----GSLS--------FLPTLREL 246 (332)
T ss_dssp CCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT----TGGG--------GCTTCCEE
T ss_pred CcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh----hHhh--------CCCCCCEE
Confidence 99998888876554444444 4445556788889999999999999988777 6777 88999999
Q ss_pred ecCC---CCCchhhcCCCCCCEEEccCCCCCCCCccccccc------CcccchhccccCC
Q 038586 267 LLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDV------REFLSELDQIAEP 317 (353)
Q Consensus 267 ~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~------l~~L~~Ld~~~~~ 317 (353)
++++ ..+|..+..+++|++|++++|+++.+|.. .|.. ...++.++...++
T Consensus 247 ~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 247 HLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN-DFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp ECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTT-SSSCSSCCSSSCCBSEEECCSSS
T ss_pred ECCCCcCeecChhhhcCccCCEEECCCCCCCccChh-HccccccccccccccceEeecCc
Confidence 9988 77888888899999999999999766652 3433 2456666655444
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=190.67 Aligned_cols=235 Identities=16% Similarity=0.156 Sum_probs=156.4
Q ss_pred CccccceEecCC-----------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcc
Q 038586 59 CCKWRGVCCNNT-----------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEF 127 (353)
Q Consensus 59 ~C~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~ 127 (353)
+|.|.|+ |+-. ..+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++. .|..
T Consensus 29 ~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~ 95 (353)
T 2z80_A 29 SCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSN--------NRITYISNSDLQRC-VNL--QALVLTSNGINTI-EEDS 95 (353)
T ss_dssp EECTTSE-EECCSTTCSSCCTTCCTTCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECTTSCCCEE-CTTT
T ss_pred CCCCCeE-eeCCCCCcccccccccccCcEEECCC--------CcCcccCHHHhccC-CCC--CEEECCCCccCcc-CHhh
Confidence 7899888 6421 23789999999 88875444578888 899 9999999999886 6677
Q ss_pred cCCCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccceecCc--cccccCCCcCCCCccccceeccCC-cCCCCC
Q 038586 128 VGSLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEK--DQHDEGSQNGQQGAEAEAVCIQHN-QANDIP 201 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~--~~~L~l~~~~~l~~~l~~l~l~~N-~l~~i~ 201 (353)
|.++++|++|++++ ...+|.. ++++++|++|++++|++++ +|. . +..+.. ++++++++| .+..++
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~-------~~~l~~-L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSL-------FSHLTK-LQILRVGNMDTFTKIQ 166 (353)
T ss_dssp TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCS-------CTTCTT-CCEEEEEESSSCCEEC
T ss_pred cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhh-------hccCCC-CcEEECCCCccccccC
Confidence 88899999999988 6667765 7888999999999988773 332 2 233333 444444444 233322
Q ss_pred CC---CCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---
Q 038586 202 CS---SNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--- 270 (353)
Q Consensus 202 ~~---~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--- 270 (353)
.. ....++.+ ++++..|..+..+++|++|++++|++....+ ..++ .+++|+.|++++
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~~--------~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE----IFVD--------VTSSVECLELRDTDL 234 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH----HHHH--------HTTTEEEEEEESCBC
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh----hhhh--------hcccccEEECCCCcc
Confidence 11 11122221 3334445555555555555555555532211 1112 234444444443
Q ss_pred --------------------------------CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCC
Q 038586 271 --------------------------------QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPR 318 (353)
Q Consensus 271 --------------------------------~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~ 318 (353)
..+|..+..+++|++|++++|++..+|+. .|+.++.|+.|+...++.
T Consensus 235 ~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG-IFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCB
T ss_pred ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH-HHhcCCCCCEEEeeCCCc
Confidence 13577788999999999999999999982 368999999999999999
Q ss_pred cccccccccc
Q 038586 319 DEECGKLQAV 328 (353)
Q Consensus 319 ~~~c~~l~~~ 328 (353)
.+.|..+..+
T Consensus 314 ~~~~~~l~~l 323 (353)
T 2z80_A 314 DCSCPRIDYL 323 (353)
T ss_dssp CCCHHHHHHH
T ss_pred cCcCCCcHHH
Confidence 8888766654
No 17
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.1e-21 Score=179.27 Aligned_cols=208 Identities=15% Similarity=0.132 Sum_probs=172.4
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~ 148 (353)
.+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++. .+..|.++++|++|++++ ...+ |..
T Consensus 28 ~~l~~L~ls~--------n~l~~~~~~~~~~l-~~L--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 28 FSTKNLDLSF--------NPLRHLGSYSFFSF-PEL--QVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp TTCCEEECTT--------CCCCEECTTTTTTC-TTC--SEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCccEEECCC--------CcccccCHhHhccc-cCC--cEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhh
Confidence 3689999999 89986666688899 999 9999999999986 556799999999999998 4444 467
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDI 227 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L 227 (353)
+.++++|++|++++|.+.+..+.. +..+.. ++++++++| .+++ .+|..++.+++|
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFP-------IGHLKT-LKELNVAHN----------------LIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCC-------CTTCTT-CCEEECCSS----------------CCCCCCCCGGGGGCTTC
T ss_pred hcCCccccEEECCCCCccccCchh-------cccCCC-CCEEECcCC----------------ccceecCchhhccCCCC
Confidence 899999999999999998655544 566677 899999999 6655 368899999999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccc----eeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCccc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEE----EALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRL 300 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~----~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~ 300 (353)
++|++++|++++..+ ..+. .+..|+ .+++++ ..+|.......+|++|++++|++..+|+.
T Consensus 152 ~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~- 218 (276)
T 2z62_A 152 EHLDLSSNKIQSIYC----TDLR--------VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDG- 218 (276)
T ss_dssp CEEECCSSCCCEECG----GGGH--------HHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTT-
T ss_pred CEEECCCCCCCcCCH----HHhh--------hhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHh-
Confidence 999999999998766 6666 566666 788888 55566666667999999999999777762
Q ss_pred ccccCcccchhccccCCCcccccccccc
Q 038586 301 VFDVREFLSELDQIAEPRDEECGKLQAV 328 (353)
Q Consensus 301 ~~~~l~~L~~Ld~~~~~~~~~c~~l~~~ 328 (353)
.|..++.|+.|+...++..+.|..+..+
T Consensus 219 ~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 219 IFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp TTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred HhcccccccEEEccCCcccccCCchHHH
Confidence 5789999999999999999999877765
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.4e-21 Score=197.89 Aligned_cols=206 Identities=11% Similarity=0.034 Sum_probs=105.5
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~ 166 (353)
|.+++..|..|..+ ++| ++|+|++|.+++. .|..|+++++|++|+|++ ...+|+. ++++++|++|++++|.++
T Consensus 85 n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 85 LQIEEIDTYAFAYA-HTI--QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp SCCCEECTTTTTTC-TTC--CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCChHHhcCC-CCC--CEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC
Confidence 45554444455555 555 5555555555554 344455555555555555 4444443 355555555555555554
Q ss_pred eecC-------ccccccCCCcCCCC-------c------------------cccceeccCCcCCCCCCCCCCCcccccee
Q 038586 167 QILE-------KDQHDEGSQNGQQG-------A------------------EAEAVCIQHNQANDIPCSSNNNVQTVEFE 214 (353)
Q Consensus 167 g~lp-------~~~~L~l~~~~~l~-------~------------------~l~~l~l~~N~l~~i~~~~~~~l~~~~l~ 214 (353)
+..| .+++|+++++.... . .++.+++++|.+..++......++.+.+.
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 4322 23344444332111 0 01222222222222221111122222211
Q ss_pred e---eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEc
Q 038586 215 G---EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVE 288 (353)
Q Consensus 215 g---~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~L 288 (353)
+ .-+..++.+++|++|++++|.+.+.+| ..++ .+++|+.|++++ ..+|..+..+++|+.|+|
T Consensus 241 ~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 241 HNNLTDTAWLLNYPGLVEVDLSYNELEKIMY----HPFV--------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SSCCCCCGGGGGCTTCSEEECCSSCCCEEES----GGGT--------TCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred CCCCCCChhhccCCCCCEEECCCCccCCCCH----HHhc--------CccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence 1 013456677777777777777777766 6666 667777777766 445555556666777777
Q ss_pred cCCCCCCCCcccccccCcccchhcc
Q 038586 289 SEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 289 s~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++|.+..+|. .++.++.|+.|+.
T Consensus 309 s~N~l~~i~~--~~~~l~~L~~L~L 331 (597)
T 3oja_B 309 SHNHLLHVER--NQPQFDRLENLYL 331 (597)
T ss_dssp CSSCCCCCGG--GHHHHTTCSEEEC
T ss_pred CCCCCCccCc--ccccCCCCCEEEC
Confidence 7776666666 5555555555554
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=5e-21 Score=176.88 Aligned_cols=203 Identities=15% Similarity=0.077 Sum_probs=161.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.+++++ ++++ .+|+.+ . +.+ ++|++++|.+++. .|..|..+++|++|+|++ ...+|.. +
T Consensus 11 ~l~~l~~~~--------~~l~-~ip~~~--~-~~l--~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~ 74 (290)
T 1p9a_G 11 SHLEVNCDK--------RNLT-ALPPDL--P-KDT--TILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVD-G 74 (290)
T ss_dssp TCCEEECTT--------SCCS-SCCSCC--C-TTC--CEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECC-S
T ss_pred CccEEECCC--------CCCC-cCCCCC--C-CCC--CEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCC-C
Confidence 678888888 7877 677544 2 677 8999999999886 677788999999999988 5566654 7
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
.+++|++|++++|+++ .+|.. +..+.. ++++++++| ++++..|..|..+++|++|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~-------~~~l~~-L~~L~l~~N----------------~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLL-------GQTLPA-LTVLDVSFN----------------RLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCC-------TTTCTT-CCEEECCSS----------------CCCCCCSSTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchh-------hccCCC-CCEEECCCC----------------cCcccCHHHHcCCCCCCEE
Confidence 8889999999999887 66665 566666 888999999 6665556778888899999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEEEccCCCCCCCCcccccccCc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEIVESEVEIDSLPDRLVFDVRE 306 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~ 306 (353)
++++|++++..+ ..+. .+++|+.|++++ ..+|.. +..+++|++|++++|++..+|. .+...+
T Consensus 130 ~L~~N~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~--~~~~~~ 195 (290)
T 1p9a_G 130 YLKGNELKTLPP----GLLT--------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--GFFGSH 195 (290)
T ss_dssp ECTTSCCCCCCT----TTTT--------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTC
T ss_pred ECCCCCCCccCh----hhcc--------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh--hhcccc
Confidence 999999887666 5667 788899999988 566654 5678899999999999988988 777778
Q ss_pred ccchhccccCCCcccccccccccc
Q 038586 307 FLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 307 ~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
.|+.++...++..+.|+..+...|
T Consensus 196 ~L~~l~L~~Np~~C~c~~~~l~~w 219 (290)
T 1p9a_G 196 LLPFAFLHGNPWLCNCEILYFRRW 219 (290)
T ss_dssp CCSEEECCSCCBCCSGGGHHHHHH
T ss_pred cCCeEEeCCCCccCcCccHHHHHH
Confidence 888888888888888875554445
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=3.7e-21 Score=194.50 Aligned_cols=208 Identities=11% Similarity=0.010 Sum_probs=174.7
Q ss_pred cEEEEEcCCCCCccccccCCccc--ccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCC-
Q 038586 73 HFKVLNLRSSNDENARRKILKGT--ISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEII- 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~--lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP- 146 (353)
+++.|++++ |.+++. +|..+..+ ++| ++|++++|.+++ +|..+..+++|++|++++ .+..|
T Consensus 351 ~L~~L~ls~--------n~l~~~~~~~~~~~~~-~~L--~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 351 SLSYLDLSR--------NALSFSGCCSYSDLGT-NSL--RHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp TCCEEECCS--------SCEEEEEECCHHHHCC-SCC--CEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred CCCEEECcC--------CccCCCcchhhhhccC-Ccc--cEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccCh
Confidence 556666666 777655 47778888 888 888888888887 677888888888888888 44444
Q ss_pred CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVY 225 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~ 225 (353)
..+.++++|++|++++|.+.+..|.. +..+.. ++++++++| .+++ .+|..++.++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGI-------FLGLTS-LNTLKMAGN----------------SFKDNTLSNVFANTT 473 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTT-------TTTCTT-CCEEECTTC----------------EEGGGEECSCCTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhh-------hcCCCC-CCEEECCCC----------------cCCCcchHHhhccCC
Confidence 46788888888888888888777776 667777 888999998 8877 4788999999
Q ss_pred CCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCCCCcccc
Q 038586 226 DIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDSLPDRLV 301 (353)
Q Consensus 226 ~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~ 301 (353)
+|++|++++|++++..| ..++ .+++|+.|++++ +.+|..+..+++|++|++++|++..+|+ .
T Consensus 474 ~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~--~ 539 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISW----GVFD--------TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG--I 539 (606)
T ss_dssp TCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES--C
T ss_pred CCCEEECCCCcCCccCh----hhhc--------ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH--h
Confidence 99999999999999888 8888 999999999999 4458889999999999999999999999 7
Q ss_pred cccCc-ccchhccccCCCccccccccccccc
Q 038586 302 FDVRE-FLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 302 ~~~l~-~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
+..++ .|+.++...++..+.|...+...|-
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred HhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence 88886 6999999999999999987766774
No 21
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=8.3e-21 Score=182.01 Aligned_cols=83 Identities=10% Similarity=-0.060 Sum_probs=60.8
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
..+..+++|++|++++|++.+..| ..++ .+++|+.|++++ ..+|..+..+++|++|++++|++..
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 309 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMY----HPFV--------KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 309 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEES----GGGT--------TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCC
T ss_pred HHHcCCCCccEEECCCCcCCCcCh----hHcc--------ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCccee
Confidence 456777888888888888877767 6777 778888888877 4456566667788888888888877
Q ss_pred CCcccccccCcccchhcccc
Q 038586 296 LPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~ 315 (353)
+|+ .++.++.|+.|+...
T Consensus 310 ~~~--~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 310 VER--NQPQFDRLENLYLDH 327 (390)
T ss_dssp CGG--GHHHHTTCSEEECCS
T ss_pred cCc--cccccCcCCEEECCC
Confidence 777 666677777776533
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=2e-21 Score=198.30 Aligned_cols=225 Identities=13% Similarity=0.065 Sum_probs=177.4
Q ss_pred ccCCcccccHHHHHhhccccccEEEeecCCCCCC----------------CCCcccC--CCCCCcEEeccC---CCCCCC
Q 038586 89 RKILKGTISSALLLCLNCMIYDIWTLVTINFGGI----------------PVPEFVG--SLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 89 ~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~----------------~~P~~~~--~L~~L~~L~Ls~---~~~lP~ 147 (353)
.|+++| +|++++++ ++| ++|+|++|.+++. .+|+.++ ++++|++|+|++ .+.+|.
T Consensus 192 ~n~l~~-ip~~l~~l-~~L--~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~ 267 (636)
T 4eco_A 192 SNNITF-VSKAVMRL-TKL--RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT 267 (636)
T ss_dssp SCEEEE-ECGGGGGC-TTC--CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT
T ss_pred cCCCcc-CCHHHhcc-cCC--CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH
Confidence 357777 99999999 999 9999999999981 0689988 999999999998 889999
Q ss_pred CCCCCCCCCEEEccCcc-cce-ecCccccccCCCcCCC------CccccceeccCCcCCCCCC--C--CCCC-----ccc
Q 038586 148 SVPEYPTLFDVEGYMAS-LVQ-ILEKDQHDEGSQNGQQ------GAEAEAVCIQHNQANDIPC--S--SNNN-----VQT 210 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~-l~g-~lp~~~~L~l~~~~~l------~~~l~~l~l~~N~l~~i~~--~--~~~~-----l~~ 210 (353)
.++++++|++|++++|+ ++| .+|.. ++.+ .. ++++++++|+++.+|. . .... +..
T Consensus 268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~-------~~~L~~~~~l~~-L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 268 FLKALPEMQLINVACNRGISGEQLKDD-------WQALADAPVGEK-IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp TTTTCSSCCEEECTTCTTSCHHHHHHH-------HHHHHHSGGGGT-CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred HHhcCCCCCEEECcCCCCCccccchHH-------HHhhhccccCCC-CCEEECCCCcCCccCchhhhccCCCCCEEeCcC
Confidence 99999999999999998 888 77765 4333 44 7777777777777665 1 2222 334
Q ss_pred cceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCc-cceeecCC---CCCchhhcCCC--CCC
Q 038586 211 VEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAV-EEEALLAQ---QNDPIELLCLD--NIL 284 (353)
Q Consensus 211 ~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~-L~~L~L~~---~~iP~~l~~l~--~L~ 284 (353)
.+++|.+| .++.+++|++|++++|+++ .+| ..++ .+++ |+.|++++ ..+|..+..++ +|+
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp----~~l~--------~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIP----ANFC--------GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEE-ECC----TTSE--------EECTTCCEEECCSSCCSSCCSCCCTTCSSCEE
T ss_pred CcCccchh-hhCCCCCCCEEECCCCccc-ccc----Hhhh--------hhcccCcEEEccCCcCcccchhhhhcccCccC
Confidence 47888999 9999999999999999998 688 7788 8999 99999999 77888877655 899
Q ss_pred EEEccCCCC-CCCCcccccc-------cCcccchhccccCCCc---c----cccccccccc--cccccCCChHHH
Q 038586 285 EIVESEVEI-DSLPDRLVFD-------VREFLSELDQIAEPRD---E----ECGKLQAVAW--EEEMGPLPVEFL 342 (353)
Q Consensus 285 ~L~Ls~N~l-~~iP~~~~~~-------~l~~L~~Ld~~~~~~~---~----~c~~l~~~~~--~~~~~~lp~~~~ 342 (353)
+|++++|.+ +.+|. .+. .++.|+.|+...+... . .+.+++.+.. +.+. .+|...+
T Consensus 406 ~L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 477 (636)
T 4eco_A 406 AIDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL 477 (636)
T ss_dssp EEECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS
T ss_pred EEECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh
Confidence 999999999 88888 777 7778988886544321 1 2445555443 3444 6665443
No 23
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.2e-20 Score=170.30 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=151.5
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEe
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNT 138 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~ 138 (353)
||.|.|.+|.. ..+.+++++ +.++ .+|..+. +.+ ++|++++|.+++. .|..|.++++|++|+
T Consensus 4 Cp~~~gC~C~~---~~~~l~~~~--------~~l~-~~p~~~~---~~l--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 65 (251)
T 3m19_A 4 CETVTGCTCNE---GKKEVDCQG--------KSLD-SVPSGIP---ADT--EKLDLQSTGLATL-SDATFRGLTKLTWLN 65 (251)
T ss_dssp CHHHHSSEEEG---GGTEEECTT--------CCCS-SCCSCCC---TTC--CEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCCCceEcCC---CCeEEecCC--------CCcc-ccCCCCC---CCC--CEEEccCCCcCcc-CHhHhcCcccCCEEE
Confidence 88999999953 345789999 8887 6776442 678 9999999999997 777899999999999
Q ss_pred ccC--CCCC-CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee
Q 038586 139 VDH--QGEI-IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG 215 (353)
Q Consensus 139 Ls~--~~~l-P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g 215 (353)
|++ ...+ |..+.++++|++|++++|++++..+.. +..+.. +++|++++| ++++
T Consensus 66 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~-L~~L~L~~N----------------~l~~ 121 (251)
T 3m19_A 66 LDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV-------FDHLTQ-LDKLYLGGN----------------QLKS 121 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCC
T ss_pred CCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH-------hcccCC-CCEEEcCCC----------------cCCC
Confidence 999 4444 556899999999999999999665555 667777 999999999 6665
Q ss_pred eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCc-hhhcCCCCCCEEEccCC
Q 038586 216 EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDP-IELLCLDNILEIVESEV 291 (353)
Q Consensus 216 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP-~~l~~l~~L~~L~Ls~N 291 (353)
..+..+..+++|++|++++|++++..+ ..++ .+++|+.|++++ ..+| ..+..+++|++|++++|
T Consensus 122 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 122 LPSGVFDRLTKLKELRLNTNQLQSIPA----GAFD--------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cChhHhccCCcccEEECcCCcCCccCH----HHcC--------cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 555667899999999999999998766 6788 899999999998 4444 46888999999999999
Q ss_pred CCC
Q 038586 292 EID 294 (353)
Q Consensus 292 ~l~ 294 (353)
++.
T Consensus 190 ~~~ 192 (251)
T 3m19_A 190 QFD 192 (251)
T ss_dssp CBC
T ss_pred cee
Confidence 993
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=186.11 Aligned_cols=243 Identities=14% Similarity=0.108 Sum_probs=157.4
Q ss_pred ccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCC
Q 038586 62 WRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLS 132 (353)
Q Consensus 62 w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~ 132 (353)
|..|.|... ..+++.|+|++ |.+++..|..|.++ ++| ++|+|++|.+++. .|..|.+++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~--------n~l~~~~~~~~~~l-~~L--~~L~L~~n~i~~~-~~~~~~~l~ 80 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGK--------NRIKTLNQDEFASF-PHL--EELELNENIVSAV-EPGAFNNLF 80 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCS--------SCCCEECTTTTTTC-TTC--CEEECTTSCCCEE-CTTTTTTCT
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCC--------CccceECHhHccCC-CCC--CEEECCCCccCEe-ChhhhhCCc
Confidence 556777431 23567788888 66665555666666 777 7777777777665 566677777
Q ss_pred CCcEEeccC--CCCCCCC-CCCCCCCCEEEccCccccee-------cCccccccCCCcC----------CCCccccceec
Q 038586 133 KLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQNG----------QQGAEAEAVCI 192 (353)
Q Consensus 133 ~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~----------~l~~~l~~l~l 192 (353)
+|++|+|++ ...+|.. ++++++|++|++++|++.+. ++.+++|+++++. .+.. ++.+++
T Consensus 81 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l 159 (477)
T 2id5_A 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTL 159 (477)
T ss_dssp TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCEEEE
T ss_pred cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC-CCEEEC
Confidence 777777766 4555543 56666777777766666543 2344555554432 2223 455555
Q ss_pred cCCcCCCCCC------------------------C---CCCCccccceee----------------------------eC
Q 038586 193 QHNQANDIPC------------------------S---SNNNVQTVEFEG----------------------------EM 217 (353)
Q Consensus 193 ~~N~l~~i~~------------------------~---~~~~l~~~~l~g----------------------------~~ 217 (353)
++|+++.++. . ....++.+.+.+ .+
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 5555554431 0 011112111111 12
Q ss_pred C-cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCC
Q 038586 218 E-HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVE 292 (353)
Q Consensus 218 p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~ 292 (353)
| ..+..+++|++|++++|++++..+ ..+. .+++|+.|++++ +..|..+..+++|++|++++|+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEG----SMLH--------ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECT----TSCT--------TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred CHHHhcCccccCeeECCCCcCCccCh----hhcc--------ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 2 346667777788888777776666 5666 888999999988 3346778899999999999999
Q ss_pred CCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 293 IDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 293 l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
+..+|+. .|..++.|+.|+...++..+.|...|...|
T Consensus 308 l~~~~~~-~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~ 344 (477)
T 2id5_A 308 LTTLEES-VFHSVGNLETLILDSNPLACDCRLLWVFRR 344 (477)
T ss_dssp CSCCCGG-GBSCGGGCCEEECCSSCEECSGGGHHHHTT
T ss_pred CceeCHh-HcCCCcccCEEEccCCCccCccchHhHHhh
Confidence 9777762 678899999999988998888887665554
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=6.6e-21 Score=179.10 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=164.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.+++.|+|++ |.++ .+|..+..+ ++| ++|+|++|.++. +|..++++++|++|++++ .+.+|..
T Consensus 104 ~~L~~L~L~~--------n~l~-~lp~~~~~l-~~L--~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 104 SHLQHMTIDA--------AGLM-ELPDTMQQF-AGL--ETLTLARNPLRA--LPASIASLNRLRELSIRACPELTELPEP 169 (328)
T ss_dssp TTCSEEEEES--------SCCC-CCCSCGGGG-TTC--SEEEEESCCCCC--CCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred CCCCEEECCC--------CCcc-chhHHHhcc-CCC--CEEECCCCcccc--CcHHHhcCcCCCEEECCCCCCccccChh
Confidence 3789999999 8998 899999999 999 999999999994 899999999999999998 8889988
Q ss_pred CCC---------CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC--CCCCcc-----ccc
Q 038586 149 VPE---------YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS--SNNNVQ-----TVE 212 (353)
Q Consensus 149 l~~---------L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~--~~~~l~-----~~~ 212 (353)
++. +++|++|++++|+++ .+|.. ++.+.. ++++++++|+++.+|.. ....++ .+.
T Consensus 170 ~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~-------l~~l~~-L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS-------IANLQN-LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240 (328)
T ss_dssp SEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG-------GGGCTT-CCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred HhhccchhhhccCCCCCEEECcCCCcC-cchHh-------hcCCCC-CCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence 765 999999999999998 77766 666666 88888888888877642 223333 335
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~L 288 (353)
+.+.+|..++.+++|++|++++|++.+.+| ..++ .+++|+.|++++ +.+|..+..+++|+.+++
T Consensus 241 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~--------~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLP----LDIH--------RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TCCBCCCCTTCCCCCCEEECTTCTTCCBCC----TTGG--------GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred chhhhHHHhcCCCCCCEEECCCCCchhhcc----hhhh--------cCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 667899999999999999999999999999 8888 999999999998 899999999999999999
Q ss_pred cCCCCCCCCc
Q 038586 289 SEVEIDSLPD 298 (353)
Q Consensus 289 s~N~l~~iP~ 298 (353)
..|.+..++.
T Consensus 309 ~~~~~~~l~~ 318 (328)
T 4fcg_A 309 PPHLQAQLDQ 318 (328)
T ss_dssp CGGGSCC---
T ss_pred CHHHHHHHhh
Confidence 9887765554
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.83 E-value=7.3e-20 Score=167.21 Aligned_cols=169 Identities=8% Similarity=0.031 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l 149 (353)
+++.|++++ +.+. .++ .+..+ ++| ++|++++|.+++ ++ .+..+++|++|++++ ...+|+ .+
T Consensus 42 ~L~~L~l~~--------~~i~-~~~-~l~~l-~~L--~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 42 SIDQIIANN--------SDIK-SVQ-GIQYL-PNV--RYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp TCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ceeeeeeCC--------CCcc-ccc-ccccC-CCC--cEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccChhHh
Confidence 455566665 4443 222 24555 566 666666666655 22 455566666666665 333333 34
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
+++++|++|++++|++++..+.. +..+.. ++++++++| .+++..+..++.+++|++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~-L~~L~L~~n----------------~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGV-------FDKLTN-LTYLNLAHN----------------QLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCCCCTTTTTTCTTCCE
T ss_pred cCCcCCCEEECCCCcCCccCHHH-------hccCCC-CCEEECCCC----------------ccCccCHHHhccCccCCE
Confidence 55666666666666655444433 344444 555666665 444333444555556666
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
|++++|++++..+ ..++ .+++|+.|++++ +..|..+..+++|++|++++|.+
T Consensus 162 L~l~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 162 LDLSYNQLQSLPE----GVFD--------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCCcCccCH----HHhc--------CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 6666666555444 3344 555555555554 22222344555555555555555
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=5.1e-20 Score=176.49 Aligned_cols=223 Identities=14% Similarity=0.081 Sum_probs=141.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-C
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-V 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l 149 (353)
+++.|++++ +.+.+..+..+..+ ++| ++|++++|.+++. .|..|+++++|++|++++ ...+|.. +
T Consensus 70 ~L~~L~L~~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 137 (390)
T 3o6n_A 70 QVELLNLND--------LQIEEIDTYAFAYA-HTI--QKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIF 137 (390)
T ss_dssp CCSEEECTT--------SCCCEECTTTTTTC-TTC--CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCcEEECCC--------CcccccChhhccCC-CCc--CEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcCCHHHh
Confidence 566777777 55554334455555 566 6666666666554 444455566666666655 4445544 3
Q ss_pred CCCCCCCEEEccCccccee-------cCccccccCCCcCCCC--------------------------c-----------
Q 038586 150 PEYPTLFDVEGYMASLVQI-------LEKDQHDEGSQNGQQG--------------------------A----------- 185 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~~l~--------------------------~----------- 185 (353)
+++++|++|++++|.+.+. ++.+++|+++++.... .
T Consensus 138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCee
Confidence 5555555555555554432 2233444444432111 1
Q ss_pred ---------cccceeccCCcCCCCCC-CCCCCc-----cccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccc
Q 038586 186 ---------EAEAVCIQHNQANDIPC-SSNNNV-----QTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHG 250 (353)
Q Consensus 186 ---------~l~~l~l~~N~l~~i~~-~~~~~l-----~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~ 250 (353)
.++.+++++|++++++. .....+ ....+++..|..+..+++|++|++++|++++ +| ..++
T Consensus 218 ~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~----~~~~ 292 (390)
T 3o6n_A 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN----LYGQ 292 (390)
T ss_dssp CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EE----CSSS
T ss_pred eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cC----cccC
Confidence 13444444454444331 111223 3345566778999999999999999999987 45 4556
Q ss_pred hhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccc
Q 038586 251 DAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGK 324 (353)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~ 324 (353)
.+++|+.|++++ ..+|..+..+++|++|++++|++..+| +..++.|+.|+...++..+.|..
T Consensus 293 --------~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 293 --------PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp --------CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHH
T ss_pred --------CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC----chhhccCCEEEcCCCCccchhHH
Confidence 789999999999 778888999999999999999997775 45678888888877777665543
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.4e-20 Score=186.31 Aligned_cols=216 Identities=12% Similarity=0.053 Sum_probs=165.2
Q ss_pred cccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccC
Q 038586 86 NARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYM 162 (353)
Q Consensus 86 ~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~ 162 (353)
..+.|.+++..|..|..+ ++| ++|+|++|.+++. .|..|+++++|++|+|++ .+..|..++++++|++|++++
T Consensus 105 ~L~~n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 180 (597)
T 3oja_B 105 YMGFNAIRYLPPHVFQNV-PLL--TVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180 (597)
T ss_dssp ECCSSCCCCCCTTTTTTC-TTC--CEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT
T ss_pred ECCCCcCCCCCHHHHcCC-CCC--CEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC
Confidence 344588887777778899 999 9999999999984 334479999999999999 444456799999999999999
Q ss_pred cccce----ecCccc-------------------cccCCCcCCC------CccccceeccCCcCCCCCC-CCCC-----C
Q 038586 163 ASLVQ----ILEKDQ-------------------HDEGSQNGQQ------GAEAEAVCIQHNQANDIPC-SSNN-----N 207 (353)
Q Consensus 163 N~l~g----~lp~~~-------------------~L~l~~~~~l------~~~l~~l~l~~N~l~~i~~-~~~~-----~ 207 (353)
|.+++ .+|.++ +|+++++... ...++.+++++|++++++. .... +
T Consensus 181 N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~ 260 (597)
T 3oja_B 181 NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVD 260 (597)
T ss_dssp SCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred CCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEE
Confidence 99874 344444 4444444221 1127888999998887642 2223 3
Q ss_pred ccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCC
Q 038586 208 VQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNIL 284 (353)
Q Consensus 208 l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~ 284 (353)
+....+++..|..|+.+++|++|+|++|++++ +| ..++ .+++|+.|++++ ..+|..+..+++|+
T Consensus 261 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~----~~~~--------~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN----LYGQ--------PIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EE----CSSS--------CCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred CCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CC----cccc--------cCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 34446777889999999999999999999987 45 4556 799999999999 77899999999999
Q ss_pred EEEccCCCCCCCCcccccccCcccchhccccCCCcccc
Q 038586 285 EIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEEC 322 (353)
Q Consensus 285 ~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c 322 (353)
.|++++|.+..+| ++.++.|+.|+...++..+.|
T Consensus 328 ~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 328 NLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp EEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred EEECCCCCCCCcC----hhhcCCCCEEEeeCCCCCChh
Confidence 9999999997665 355677888877666554433
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=1.4e-19 Score=182.86 Aligned_cols=151 Identities=9% Similarity=0.003 Sum_probs=118.0
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.+++.|++++ |.+++..|.+|.++ ++| ++|+|++|.+++. .|..|+++++|++|+|++ .+..|..
T Consensus 33 ~~l~~L~Ls~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 100 (606)
T 3t6q_A 33 NSTECLEFSF--------NVLPTIQNTTFSRL-INL--TFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETA 100 (606)
T ss_dssp TTCCEEECTT--------CCCSEECTTTSTTC-TTC--SEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred CcCcEEEccC--------CccCcCChhHhccC-ccc--eEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhh
Confidence 4789999999 99997778899999 999 9999999999997 789999999999999998 4555788
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCccc-----cceeeeCCcc
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQT-----VEFEGEMEHS 220 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~-----~~l~g~~p~~ 220 (353)
++++++|++|++++|.+++..|.. ++.+.. ++++++++|++..++.. ....++. ..+++..|..
T Consensus 101 ~~~l~~L~~L~L~~n~i~~l~~~~-------~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 101 LSGPKALKHLFFIQTGISSIDFIP-------LHNQKT-LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp TSSCTTCCEEECTTSCCSCGGGSC-------CTTCTT-CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred hcccccccEeeccccCcccCCcch-------hccCCc-ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 999999999999999998643444 455555 67777777776655311 1223332 2455566777
Q ss_pred hhccCCCC--EEEcccCcCcccCC
Q 038586 221 LSEVYDIF--DVERYSSSLDQILE 242 (353)
Q Consensus 221 l~~l~~L~--~L~Ls~N~l~g~~p 242 (353)
++.+++|+ .|++++|++.+..|
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECT
T ss_pred hhhhcccceeEEecCCCccCccCh
Confidence 88888888 88888888877666
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=3.1e-20 Score=187.70 Aligned_cols=226 Identities=12% Similarity=0.073 Sum_probs=176.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHH-HHHhhccccccEEEeecCCCCCCCC--CcccCCCCCCcEEeccC---CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSA-LLLCLNCMIYDIWTLVTINFGGIPV--PEFVGSLSKLSLNTVDH---QGEI 145 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~-l~~L~~~L~~~~L~Ls~N~l~~~~~--P~~~~~L~~L~~L~Ls~---~~~l 145 (353)
.+++.|++++ |.+.+.+|.. +..+ ++| ++|++++|.+++. . |..++.+++|++|++++ .+..
T Consensus 325 ~~L~~L~l~~--------n~~~~~~~~~~~~~l-~~L--~~L~l~~n~l~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 325 PSLTHLSIKG--------NTKRLELGTGCLENL-ENL--RELDLSHDDIETS-DCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp TTCSEEECCS--------CSSCCBCCSSTTTTC-TTC--CEEECCSSCCCEE-EESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred CcCCEEECCC--------CCcccccchhhhhcc-CcC--CEEECCCCccccc-cCcchhcccCCCCCEEECCCCcCCcCC
Confidence 4688999999 8888888764 7788 999 9999999999885 4 67789999999999998 4455
Q ss_pred CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCcccc-----ceee--
Q 038586 146 IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQTV-----EFEG-- 215 (353)
Q Consensus 146 P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~~-----~l~g-- 215 (353)
|..++++++|++|++++|++.+..|.. .+..+.. ++.+++++|++..++.. ....++.+ .+++
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~~~~~------~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVKDAQS------PFQNLHL-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECCTTCC------TTTTCTT-CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred HHHhcCCccCCeEECCCCcCCCcccch------hhhCccc-CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 778889999999999999988654421 0333444 66666666666543321 12333333 4443
Q ss_pred -eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccC
Q 038586 216 -EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESE 290 (353)
Q Consensus 216 -~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~ 290 (353)
..+..+..+++|++|++++|++++..| ..++ .+++|+.|++++ +..|..+..+++| +|++++
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQ----HAFT--------SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred cccchhhccCCCccEEECCCCccCccCh----hhhc--------cccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 233678999999999999999999888 8888 999999999999 5567789999999 999999
Q ss_pred CCC-CCCCcccccccCcccchhccccCCCccccccccccccc
Q 038586 291 VEI-DSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 291 N~l-~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
|++ +..|. .++.++.|+.++...++..+.|...+.+.|-
T Consensus 533 N~l~~~~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~ 572 (606)
T 3t6q_A 533 NHISIILPS--LLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572 (606)
T ss_dssp SCCCCCCGG--GHHHHHTSSEEECTTCCEECSGGGHHHHHHH
T ss_pred CcccccCHh--hcccCCCCCEEeCCCCCccccCCcHHHHHHH
Confidence 999 54555 6889999999999999999999987777773
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.6e-19 Score=176.02 Aligned_cols=213 Identities=14% Similarity=0.061 Sum_probs=156.0
Q ss_pred ccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCC-CcccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEc
Q 038586 85 ENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPV-PEFVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEG 160 (353)
Q Consensus 85 ~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~-P~~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~L 160 (353)
.+.+.|.+++..|..+.++ ++| ++|++++|.+.+. + |..|.++++|++|+|++ .+..|..++++++|++|++
T Consensus 35 L~Ls~n~i~~~~~~~~~~l-~~L--~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRL-QDL--QFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp EECCSSCCCEECTTTTSSC-TTC--CEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred EEecCCccCcCChhHhccC-ccc--cEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 5667777877667788888 888 9999998888765 5 45688889999999988 3445778888999999999
Q ss_pred cCcccce---------ecCccccccCCCcCC-----------CCccccceeccCCcCCCCCCCCC---------------
Q 038586 161 YMASLVQ---------ILEKDQHDEGSQNGQ-----------QGAEAEAVCIQHNQANDIPCSSN--------------- 205 (353)
Q Consensus 161 s~N~l~g---------~lp~~~~L~l~~~~~-----------l~~~l~~l~l~~N~l~~i~~~~~--------------- 205 (353)
++|++++ .++.+++|+++++.. +.. ++++++++|++..++....
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9988865 245667777776532 223 5677888888776533211
Q ss_pred ----------------------CCcccc-----ceeeeCCcchhc-----------------------------------
Q 038586 206 ----------------------NNVQTV-----EFEGEMEHSLSE----------------------------------- 223 (353)
Q Consensus 206 ----------------------~~l~~~-----~l~g~~p~~l~~----------------------------------- 223 (353)
..++.+ .+++..|..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 112222 222223332221
Q ss_pred ----cCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 224 ----VYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 224 ----l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
.++|++|++++|++.+.+| ..++ .+++|++|++++ +..|..+..+++|++|++++|.++.
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLK----SVFS--------HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECT----TTTT--------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ccccccCceEEEecCccccccch----hhcc--------cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 1579999999999998888 8888 999999999999 3346688999999999999999955
Q ss_pred C-CcccccccCcccchhccccC
Q 038586 296 L-PDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 296 i-P~~~~~~~l~~L~~Ld~~~~ 316 (353)
+ |. .|+.++.|+.|+...+
T Consensus 338 ~~~~--~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 338 IDSR--MFENLDKLEVLDLSYN 357 (455)
T ss_dssp ECGG--GGTTCTTCCEEECCSS
T ss_pred cChh--HhcCcccCCEEECCCC
Confidence 5 56 7899999999986443
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=2.7e-20 Score=195.34 Aligned_cols=230 Identities=11% Similarity=0.044 Sum_probs=169.0
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCC-----------------CCCCcccC--CCCCCcEEeccC---CCCCCC
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGG-----------------IPVPEFVG--SLSKLSLNTVDH---QGEIIH 147 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~-----------------~~~P~~~~--~L~~L~~L~Ls~---~~~lP~ 147 (353)
|+++| +|++++++ ++| ++|+|++|.+++ . +|+.++ ++++|++|+|++ .+.+|.
T Consensus 435 N~L~~-IP~~l~~L-~~L--~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 435 NRITF-ISKAIQRL-TKL--QIIYFANSPFTYDNIAVDWEDANSDYAKQY-ENEELSWSNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp CEEEE-ECGGGGGC-TTC--CEEEEESCCCCGGGBSSSCSCTTSHHHHHH-TTSCCCGGGCTTCCEEEEESCTTCCSCCG
T ss_pred Ccccc-hhHHHhcC-CCC--CEEECcCCcCCCCccccccccccccccccc-CChhhhhccCCCCCEEECcCCCCCccChH
Confidence 45665 99999999 999 999999999999 4 799988 999999999998 889999
Q ss_pred CCCCCCCCCEEEccCcc-cce-ecCcc-ccccCCCcCCCCccccceeccCCcCCCCCC----CCCCCccc-----cceee
Q 038586 148 SVPEYPTLFDVEGYMAS-LVQ-ILEKD-QHDEGSQNGQQGAEAEAVCIQHNQANDIPC----SSNNNVQT-----VEFEG 215 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~-l~g-~lp~~-~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~----~~~~~l~~-----~~l~g 215 (353)
.++++++|++|++++|+ ++| .+|.. ..+. .....+.. ++.|++++|+++.+|. .....++. .+++
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-~~~~~l~~-L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLA-DDEDTGPK-IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-HCTTTTTT-CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhh-hcccccCC-ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-
Confidence 99999999999999998 888 77754 0000 00112224 7777777777777665 22233333 3555
Q ss_pred eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCc-cceeecCC---CCCchhhcCCCC--CCEEEcc
Q 038586 216 EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAV-EEEALLAQ---QNDPIELLCLDN--ILEIVES 289 (353)
Q Consensus 216 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~-L~~L~L~~---~~iP~~l~~l~~--L~~L~Ls 289 (353)
.+| .++.+++|++|++++|++. .+| ..++ .+++ |+.|++++ ..+|..+..++. |+.|+++
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~-~lp----~~l~--------~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE-EIP----EDFC--------AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS-CCC----TTSC--------EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECC
T ss_pred cch-hhcCCCcceEEECcCCccc-cch----HHHh--------hccccCCEEECcCCCCCcCchhhhccccCCCCEEECc
Confidence 788 8999999999999999998 788 7788 8998 99999999 778887777654 9999999
Q ss_pred CCCC-CCCCccc-ccc--cCcccchhccccCCCc-------ccccccccccc--cccccCCChHHH
Q 038586 290 EVEI-DSLPDRL-VFD--VREFLSELDQIAEPRD-------EECGKLQAVAW--EEEMGPLPVEFL 342 (353)
Q Consensus 290 ~N~l-~~iP~~~-~~~--~l~~L~~Ld~~~~~~~-------~~c~~l~~~~~--~~~~~~lp~~~~ 342 (353)
+|++ +.+|... .++ .++.|+.|+...+... ..|..++.+.. +.+. .+|...+
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 717 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL 717 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSS
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHh
Confidence 9999 6666410 122 3347888876443221 13445555543 3333 6666543
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=179.41 Aligned_cols=212 Identities=11% Similarity=0.022 Sum_probs=152.1
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CC-CCCCCCCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QG-EIIHSVPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~-~lP~~l~~ 151 (353)
..++.++ ++++ .+|..+ . +++ ++|+|++|++++. .|..|.++++|++|+|++ .. ..|..|++
T Consensus 14 ~~v~c~~--------~~l~-~ip~~~--~-~~l--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHR--------KRFV-AVPEGI--P-TET--RLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNN 78 (477)
T ss_dssp TEEECCS--------CCCS-SCCSCC--C-TTC--SEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CEEEeCC--------CCcC-cCCCCC--C-CCC--cEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence 3577787 7776 677644 3 688 9999999999997 678899999999999998 44 44788999
Q ss_pred CCCCCEEEccCccccee-------cCccccccCCCcCC----------CCccccceeccCCcCCCCCC---CCCCCcccc
Q 038586 152 YPTLFDVEGYMASLVQI-------LEKDQHDEGSQNGQ----------QGAEAEAVCIQHNQANDIPC---SSNNNVQTV 211 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~-------lp~~~~L~l~~~~~----------l~~~l~~l~l~~N~l~~i~~---~~~~~l~~~ 211 (353)
+++|++|+|++|++++. ++.+++|+++++.. +.. ++++++++|++..++. .....++.+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCccceeChhhccCCCCCCEE
Confidence 99999999999998742 34556667665532 233 5667777776655432 122333333
Q ss_pred ceee-----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCC
Q 038586 212 EFEG-----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDN 282 (353)
Q Consensus 212 ~l~g-----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~ 282 (353)
.+.+ ..+..+..+++|+.|++++|++.+..+ ..+. .+++|+.|++++ +.+|.......+
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~----~~~~--------~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 225 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD----YSFK--------RLYRLKVLEISHWPYLDTMTPNCLYGLN 225 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT----TCSC--------SCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh----hhcc--------cCcccceeeCCCCccccccCcccccCcc
Confidence 3332 223446667777777777777766555 5666 788888888877 556666666678
Q ss_pred CCEEEccCCCCCCCCcccccccCcccchhcccc
Q 038586 283 ILEIVESEVEIDSLPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 283 L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~ 315 (353)
|++|++++|++..+|.. .|..+++|+.|+...
T Consensus 226 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYL-AVRHLVYLRFLNLSY 257 (477)
T ss_dssp CSEEEEESSCCCSCCHH-HHTTCTTCCEEECCS
T ss_pred ccEEECcCCcccccCHH-HhcCccccCeeECCC
Confidence 99999999999888842 688888999888644
No 34
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.7e-20 Score=174.87 Aligned_cols=103 Identities=17% Similarity=0.114 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCCccccccCC-cccccHHHH-------HhhccccccEEEeecCCCCCCCCCccc--CCCCCCcEEeccC-
Q 038586 73 HFKVLNLRSSNDENARRKIL-KGTISSALL-------LCLNCMIYDIWTLVTINFGGIPVPEFV--GSLSKLSLNTVDH- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l-~g~lp~~l~-------~L~~~L~~~~L~Ls~N~l~~~~~P~~~--~~L~~L~~L~Ls~- 141 (353)
.++.|++++ |.+ .+.+|..+. .+ ++| ++|++++|.+++. +|..+ +.+++|++|+|++
T Consensus 64 ~L~~L~L~~--------n~l~~~~~~~~~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~~~l~~L~~L~Ls~N 131 (312)
T 1wwl_A 64 IIKSLSLKR--------LTVRAARIPSRILFGALRVLGI-SGL--QELTLENLEVTGT-APPPLLEATGPDLNILNLRNV 131 (312)
T ss_dssp HHHHCCCCE--------EEEEEEECBHHHHHHHHHHHTT-SCC--CEEEEEEEBCBSC-CCCCSSSCCSCCCSEEEEESC
T ss_pred HHhhccccc--------ccccCCCcCHHHHHHHHHhcCc-CCc--cEEEccCCcccch-hHHHHHHhcCCCccEEEccCC
Confidence 367788888 777 567777665 67 888 9999999999887 88876 8899999999988
Q ss_pred -CCCCCCCCCCC-----CCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC
Q 038586 142 -QGEIIHSVPEY-----PTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN 195 (353)
Q Consensus 142 -~~~lP~~l~~L-----~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N 195 (353)
...+|..++.+ ++|++|++++|++.+..|.. ++.+.. ++++++++|
T Consensus 132 ~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-------~~~l~~-L~~L~Ls~N 183 (312)
T 1wwl_A 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-------VRVFPA-LSTLDLSDN 183 (312)
T ss_dssp BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-------CCCCSS-CCEEECCSC
T ss_pred CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-------hccCCC-CCEEECCCC
Confidence 44457766666 88999999999888665555 555555 667777777
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=4.7e-20 Score=183.13 Aligned_cols=111 Identities=10% Similarity=0.020 Sum_probs=83.5
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++..|..+..+ ++| ++|++++|++++. .|..|+++++|++|+|++ ...+|..
T Consensus 21 ~~L~~L~Ls~--------n~i~~~~~~~~~~l-~~L--~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 87 (520)
T 2z7x_B 21 QKTTILNISQ--------NYISELWTSDILSL-SKL--RILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLVKISCH- 87 (520)
T ss_dssp TTCSEEECCS--------SCCCCCCHHHHTTC-TTC--CEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred ccccEEECCC--------CcccccChhhcccc-ccc--cEEecCCCccCCc-ChHHhhcccCCCEEecCCCceeecCcc-
Confidence 4788888888 88887666788888 888 8888888888886 677888888888888888 6677776
Q ss_pred CCCCCCCEEEccCcccce-ec-------CccccccCCCcCCC-------Cccc--cceeccCCcC
Q 038586 150 PEYPTLFDVEGYMASLVQ-IL-------EKDQHDEGSQNGQQ-------GAEA--EAVCIQHNQA 197 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g-~l-------p~~~~L~l~~~~~l-------~~~l--~~l~l~~N~l 197 (353)
.+++|++|++++|.+++ .+ +.+++|+++++... .. + +.+++++|++
T Consensus 88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-L~L~~L~l~~n~l 150 (520)
T 2z7x_B 88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH-LNISKVLLVLGET 150 (520)
T ss_dssp -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTT-SCEEEEEEEECTT
T ss_pred -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhcccccc-ceeeEEEeecccc
Confidence 78888888888888765 23 34566777665432 22 3 6677777766
No 36
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=3.2e-20 Score=185.34 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=155.5
Q ss_pred CccccceEecCC-----------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcc
Q 038586 59 CCKWRGVCCNNT-----------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEF 127 (353)
Q Consensus 59 ~C~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~ 127 (353)
.|.|.|+ |+.. ..+++.|++++ |.+++..|.++..+ ++| ++|++++|++++. .|..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------n~l~~~~~~~~~~l-~~L--~~L~Ls~n~i~~~-~~~~ 69 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------NKITYIGHGDLRAC-ANL--QVLILKSSRINTI-EGDA 69 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------SCCCEECSSTTSSC-TTC--CEEECTTSCCCEE-CTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcC--------CccCccChhhhhcC-Ccc--cEEECCCCCcCcc-Chhh
Confidence 5999998 8532 23789999999 88987778888999 999 9999999999986 6778
Q ss_pred cCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccce-ecCccccccCCCcCCCCccccceeccCCcCCCCCCC
Q 038586 128 VGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQ-ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS 203 (353)
Q Consensus 128 ~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g-~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~ 203 (353)
|+++++|++|++++ ...+|+ .++++++|++|++++|.+++ ..|.. ++.+.. ++++++++|
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------~~~l~~-L~~L~L~~n-------- 133 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------FPNLTN-LQTLRIGNV-------- 133 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS-------CTTCTT-CCEEEEEES--------
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh-------hhccCC-ccEEECCCC--------
Confidence 99999999999998 555555 48999999999999999886 45555 667777 899999999
Q ss_pred CCCCccccceeeeCC-cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhh-c
Q 038586 204 SNNNVQTVEFEGEME-HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIEL-L 278 (353)
Q Consensus 204 ~~~~l~~~~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l-~ 278 (353)
.+.+.+| ..++++++|++|++++|++++..| ..++ .+++|++|+++. +.+|..+ .
T Consensus 134 --------~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~--------~l~~L~~L~l~~n~~~~~~~~~~~ 193 (549)
T 2z81_A 134 --------ETFSEIRRIDFAGLTSLNELEIKALSLRNYQS----QSLK--------SIRDIHHLTLHLSESAFLLEIFAD 193 (549)
T ss_dssp --------SSCCEECTTTTTTCCEEEEEEEEETTCCEECT----TTTT--------TCSEEEEEEEECSBSTTHHHHHHH
T ss_pred --------ccccccCHhhhhcccccCeeeccCCcccccCh----hhhh--------ccccCceEecccCcccccchhhHh
Confidence 6444554 678999999999999999999888 8888 899999999987 5566654 4
Q ss_pred CCCCCCEEEccCCCCCC
Q 038586 279 CLDNILEIVESEVEIDS 295 (353)
Q Consensus 279 ~l~~L~~L~Ls~N~l~~ 295 (353)
.+++|++|++++|++..
T Consensus 194 ~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 194 ILSSVRYLELRDTNLAR 210 (549)
T ss_dssp STTTBSEEEEESCBCTT
T ss_pred hcccccEEEccCCcccc
Confidence 68999999999999943
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=6.3e-19 Score=160.72 Aligned_cols=185 Identities=13% Similarity=0.096 Sum_probs=153.9
Q ss_pred cccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCC
Q 038586 61 KWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSL 131 (353)
Q Consensus 61 ~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L 131 (353)
.|..+.|... ...++.|++++ |.+++..+..+..+ ++| ++|++++|.++.. .+..|.++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~--------n~l~~~~~~~~~~l-~~L--~~L~l~~n~l~~i-~~~~~~~l 84 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQS--------NKLSSLPSKAFHRL-TKL--RLLYLNDNKLQTL-PAGIFKEL 84 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCS--------SCCSCCCTTSSSSC-TTC--CEEECCSSCCSCC-CTTTTSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcC--------CCCCeeCHHHhcCC-CCC--CEEECCCCccCee-ChhhhcCC
Confidence 3677888531 23688999999 89886555678899 999 9999999999985 44457899
Q ss_pred CCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCc
Q 038586 132 SKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNV 208 (353)
Q Consensus 132 ~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l 208 (353)
++|++|++++ ...+|. .+.++++|++|++++|.+++..+.. +..+.. ++++++++|
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~Ls~n------------- 143 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-------FDSLTK-LTYLSLGYN------------- 143 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS-------------
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHH-------hCcCcC-CCEEECCCC-------------
Confidence 9999999998 666665 4689999999999999999766666 677777 999999999
Q ss_pred cccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCC
Q 038586 209 QTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNIL 284 (353)
Q Consensus 209 ~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~ 284 (353)
.+++..+..+..+++|++|++++|++++..+ ..+. .+++|+.|++++ ..+|. .+..+++|+
T Consensus 144 ---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 144 ---ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE----GAFD--------KLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp ---CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---cCCccCHhHccCCcccceeEecCCcCcEeCh----hHhc--------cCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 6665555668899999999999999998766 6677 899999999998 55665 477899999
Q ss_pred EEEccCCCC
Q 038586 285 EIVESEVEI 293 (353)
Q Consensus 285 ~L~Ls~N~l 293 (353)
.|++++|.+
T Consensus 209 ~L~l~~N~~ 217 (270)
T 2o6q_A 209 MLQLQENPW 217 (270)
T ss_dssp EEECCSSCB
T ss_pred EEEecCCCe
Confidence 999999999
No 38
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=4.2e-20 Score=182.82 Aligned_cols=195 Identities=11% Similarity=0.041 Sum_probs=121.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|+|++ |.+++..|..|..+ ++| ++|+|++|.+++. .| ++.+++|++|+|++ ...+|.
T Consensus 35 ~L~~L~Ls~--------n~l~~~~~~~~~~l-~~L--~~L~Ls~N~l~~~-~~--l~~l~~L~~L~Ls~N~l~~l~~--- 97 (487)
T 3oja_A 35 NVKELDLSG--------NPLSQISAADLAPF-TKL--ELLNLSSNVLYET-LD--LESLSTLRTLDLNNNYVQELLV--- 97 (487)
T ss_dssp GCCEEECCS--------SCCCCCCGGGGTTC-TTC--CEEECTTSCCEEE-EE--CTTCTTCCEEECCSSEEEEEEE---
T ss_pred CccEEEeeC--------CcCCCCCHHHHhCC-CCC--CEEEeeCCCCCCC-cc--cccCCCCCEEEecCCcCCCCCC---
Confidence 567777777 67766556667777 777 7777777777663 33 66777777777776 333332
Q ss_pred CCCCCCEEEccCccccee----cCccccccCCCcCC----------CCccccceeccCCcCCCCCCCCCCCccccceeee
Q 038586 151 EYPTLFDVEGYMASLVQI----LEKDQHDEGSQNGQ----------QGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE 216 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~----lp~~~~L~l~~~~~----------l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~ 216 (353)
.++|++|++++|.+++. +|.+++|++++|.. +.. ++.|++++| .+++.
T Consensus 98 -~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N----------------~l~~~ 159 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLN----------------EIDTV 159 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTS----------------CCCEE
T ss_pred -CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCC----------------CCCCc
Confidence 25666666666666542 23334444444321 122 344555555 56666
Q ss_pred CCcchh-ccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCC
Q 038586 217 MEHSLS-EVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVE 292 (353)
Q Consensus 217 ~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~ 292 (353)
.|..+. .+++|++|+|++|.+++..+ .. .+++|+.|++++ ..+|+.+..+++|+.|++++|.
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~------~~--------~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG------QV--------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC------CC--------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred ChHHHhhhCCcccEEecCCCccccccc------cc--------cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence 666665 57777777777777765422 22 466777777777 4456667777777777777777
Q ss_pred CCCCCcccccccCcccchhccccCCC
Q 038586 293 IDSLPDRLVFDVREFLSELDQIAEPR 318 (353)
Q Consensus 293 l~~iP~~~~~~~l~~L~~Ld~~~~~~ 318 (353)
+..+|. .++.++.|+.|+...++.
T Consensus 226 l~~lp~--~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 226 LVLIEK--ALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCEECT--TCCCCTTCCEEECTTCCB
T ss_pred Ccccch--hhccCCCCCEEEcCCCCC
Confidence 766777 666667777666544443
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=5.9e-19 Score=161.89 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=153.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCC-CCCCCCCcccCCCCCCcEEeccC--CCCC-CC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTIN-FGGIPVPEFVGSLSKLSLNTVDH--QGEI-IH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~ 147 (353)
.+++.|++++ |.+++..|..+..+ ++| ++|++++|. +... .|..+..+++|++|++++ ...+ |.
T Consensus 56 ~~L~~L~l~~--------n~l~~~~~~~~~~l-~~L--~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~ 123 (285)
T 1ozn_A 56 RNLTILWLHS--------NVLARIDAAAFTGL-ALL--EQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPG 123 (285)
T ss_dssp TTCCEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCEEECCC--------CccceeCHhhcCCc-cCC--CEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHh
Confidence 4799999999 89987778889999 999 999999998 8775 588899999999999999 4444 67
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.+.++++|++|++++|.+++..+.. +..+.. ++++++++| ++++..+..+..+++|
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQALPDDT-------FRDLGN-LTHLFLHGN----------------RISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCEECTTTTTTCTTC
T ss_pred HhhCCcCCCEEECCCCcccccCHhH-------hccCCC-ccEEECCCC----------------cccccCHHHhcCcccc
Confidence 7899999999999999998655555 666777 999999999 7776666679999999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCc-hhhcCCCCCCEEEccCCCC-CCCC
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDP-IELLCLDNILEIVESEVEI-DSLP 297 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP-~~l~~l~~L~~L~Ls~N~l-~~iP 297 (353)
++|++++|++++..| ..++ .+++|+.|++++ ..+| ..+..+++|++|++++|++ ...+
T Consensus 180 ~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHP----HAFR--------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CEEECCSSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCcccccCH----hHcc--------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 999999999999888 8888 899999999999 4455 4588999999999999999 4433
No 40
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=6.8e-19 Score=162.56 Aligned_cols=173 Identities=12% Similarity=0.035 Sum_probs=153.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++ +|.. +.+++|++|++++ ...+|..+
T Consensus 31 ~~l~~L~L~~--------N~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~l~~~~ 96 (290)
T 1p9a_G 31 KDTTILHLSE--------NLLYTFSLATLMPY-TRL--TQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQSLPLLG 96 (290)
T ss_dssp TTCCEEECTT--------SCCSEEEGGGGTTC-TTC--CEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSSCCCCT
T ss_pred CCCCEEEcCC--------CcCCccCHHHhhcC-CCC--CEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCcCchhh
Confidence 4789999999 99987778889999 999 999999999998 5554 8999999999999 78899999
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
..+++|++|++++|++++..|.. +..+.. ++++++++| ++++..+..|..+++|++
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~-------~~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGA-------LRGLGE-LQELYLKGN----------------ELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSST-------TTTCTT-CCEEECTTS----------------CCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcCcccCHHH-------HcCCCC-CCEEECCCC----------------CCCccChhhcccccCCCE
Confidence 99999999999999999666666 777777 999999999 666555667889999999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
|++++|++++..+ ..+. .+++|+.|++++ ..+|..+..+.+|+.+++++|.+.
T Consensus 153 L~L~~N~l~~l~~----~~~~--------~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 153 LSLANNNLTELPA----GLLN--------GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EECTTSCCSCCCT----TTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EECCCCcCCccCH----HHhc--------CcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 9999999987655 5567 899999999999 889999999999999999999983
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1.4e-18 Score=178.05 Aligned_cols=73 Identities=7% Similarity=0.006 Sum_probs=39.0
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l 165 (353)
|.+++..|..+.++ ++| ++|++++|.+++ +|+ .|+++++|++|++++ ...+| ..++++++|++|++++|.+
T Consensus 59 n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 59 NTISKLEPELCQKL-PML--KVLNLQHNELSQ--LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp SCCCCCCTTHHHHC-TTC--CEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred CccCccCHHHHhcc-cCc--CEEECCCCccCc--cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence 45554445555555 555 555555555555 333 355555566666555 33333 3455566666666666555
Q ss_pred ce
Q 038586 166 VQ 167 (353)
Q Consensus 166 ~g 167 (353)
++
T Consensus 134 ~~ 135 (680)
T 1ziw_A 134 SS 135 (680)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=3.4e-19 Score=178.96 Aligned_cols=112 Identities=11% Similarity=-0.006 Sum_probs=87.9
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++..|.+|..+ ++| ++|++++|.+++. .|..|.++++|++|+|++ ...+|..
T Consensus 52 ~~L~~L~Ls~--------N~i~~~~~~~~~~l-~~L--~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 52 PRTKALSLSQ--------NSISELRMPDISFL-SEL--RVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp TTCCEEECCS--------SCCCCCCGGGTTTC-TTC--CEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CCcCEEECCC--------CCccccChhhhccC-CCc--cEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence 4789999999 88887667788899 999 9999999999986 688899999999999998 6678877
Q ss_pred CCCCCCCEEEccCcccce-e-------cCccccccCCCcCCCC-------c-cccceeccCCcC
Q 038586 150 PEYPTLFDVEGYMASLVQ-I-------LEKDQHDEGSQNGQQG-------A-EAEAVCIQHNQA 197 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g-~-------lp~~~~L~l~~~~~l~-------~-~l~~l~l~~N~l 197 (353)
.+++|++|++++|++++ . ++.+++|+++++.... . .++.+++++|++
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 79999999999998875 2 3455677776654321 2 026677777766
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=2.1e-18 Score=157.55 Aligned_cols=198 Identities=14% Similarity=0.114 Sum_probs=142.8
Q ss_pred HHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccC
Q 038586 100 LLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEG 177 (353)
Q Consensus 100 l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l 177 (353)
+..+ ++| +.|++++|.++. ++ .+..+++|++|++++ ...+ +.++++++|++|++++|.+++..+..
T Consensus 37 ~~~l-~~L--~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~----- 104 (272)
T 3rfs_A 37 QNEL-NSI--DQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGV----- 104 (272)
T ss_dssp HHHH-TTC--CEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTT-----
T ss_pred cccc-cce--eeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhH-----
Confidence 4566 778 888888888775 33 477788888888887 4344 36778888888888888887655555
Q ss_pred CCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcc
Q 038586 178 SQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNK 257 (353)
Q Consensus 178 ~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~ 257 (353)
+..+.. ++++++++| ++++..+..++.+++|++|++++|++++..+ ..++
T Consensus 105 --~~~l~~-L~~L~L~~n----------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~------- 154 (272)
T 3rfs_A 105 --FDKLTN-LKELVLVEN----------------QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK----GVFD------- 154 (272)
T ss_dssp --TTTCTT-CCEEECTTS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT-------
T ss_pred --hcCCcC-CCEEECCCC----------------cCCccCHHHhccCCCCCEEECCCCccCccCH----HHhc-------
Confidence 556666 788888888 6665556667788888888888888877666 5566
Q ss_pred cCCCccceeecCC---CCCch-hhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCccccccccccc-c-c
Q 038586 258 QQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVA-W-E 331 (353)
Q Consensus 258 ~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~-~-~ 331 (353)
.+++|+.|++++ ..+|. .+..+++|++|++++|++..+|+. .++.++.|+.|+...++..+.|..++.+. | +
T Consensus 155 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 155 -KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWIN 232 (272)
T ss_dssp -TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred -cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH-HHhCCcCCCEEEccCCCccccCcHHHHHHHHHH
Confidence 788888888887 34443 467788888888888888444431 57788888888887777777777776654 2 4
Q ss_pred ccccCCChHH
Q 038586 332 EEMGPLPVEF 341 (353)
Q Consensus 332 ~~~~~lp~~~ 341 (353)
.+.|.+|..+
T Consensus 233 ~~~g~ip~~~ 242 (272)
T 3rfs_A 233 KHSGVVRNSA 242 (272)
T ss_dssp HTGGGBBCTT
T ss_pred hCCCcccCcc
Confidence 5677777544
No 44
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-19 Score=169.74 Aligned_cols=191 Identities=10% Similarity=0.012 Sum_probs=102.1
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce--ecCccccccCCCcCC---
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ--ILEKDQHDEGSQNGQ--- 182 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g--~lp~~~~L~l~~~~~--- 182 (353)
++|++++|.+++. .|..|.++++|++|+|++ ...+++ +..+++|++|++++|++++ ..|.+++|+++++..
T Consensus 37 ~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~ 114 (317)
T 3o53_A 37 KELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV 114 (317)
T ss_dssp SEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEE
T ss_pred CEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCc
Confidence 4444444444443 333444444444444444 111221 4444444444444444443 223334444443321
Q ss_pred ----CCccccceeccCCcCCCCCCCC---CCCcc-----ccceeeeCCcchh-ccCCCCEEEcccCcCcccCCCCCcccc
Q 038586 183 ----QGAEAEAVCIQHNQANDIPCSS---NNNVQ-----TVEFEGEMEHSLS-EVYDIFDVERYSSSLDQILESERTEDH 249 (353)
Q Consensus 183 ----l~~~l~~l~l~~N~l~~i~~~~---~~~l~-----~~~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 249 (353)
... ++++++++|+++.++... ...++ ...+++..|..+. .+++|++|++++|++++. | ..
T Consensus 115 ~~~~~~~-L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-----~~ 187 (317)
T 3o53_A 115 SCSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-----GQ 187 (317)
T ss_dssp EECCCSS-CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-----CC
T ss_pred CccccCC-CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-----cc
Confidence 122 455566666555443211 11222 2245555555553 567777777777777654 2 12
Q ss_pred chhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCc
Q 038586 250 GDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRD 319 (353)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~ 319 (353)
. .+++|+.|++++ ..+|..+..+++|++|++++|++..+|+ .+..++.|+.|+...++..
T Consensus 188 ~--------~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 188 V--------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp C--------CCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEECTTCCCB
T ss_pred c--------ccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh--HhhcCCCCCEEEccCCCcc
Confidence 2 467777787777 4556667777788888888888777777 6777777777776655554
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=9.2e-20 Score=181.03 Aligned_cols=163 Identities=15% Similarity=0.174 Sum_probs=113.5
Q ss_pred CCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCcccce--ecCccccccCCCcCCCCccccceeccCCcCCCCCCC
Q 038586 129 GSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASLVQ--ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS 203 (353)
Q Consensus 129 ~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l~g--~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~ 203 (353)
..+++|++|++++ .+.+|..++++++|++|++++|++++ .+|.. +..+.. ++++++++|
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-------~~~l~~-L~~L~Ls~N-------- 384 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM-------TTQMKS-LQQLDISQN-------- 384 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH-------HTTCTT-CCEEECCSS--------
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH-------HhhCCC-CCEEECCCC--------
Confidence 3445555555554 33344445555555555555555543 33333 333444 556666666
Q ss_pred CCCCccccceeeeCCcc-hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcC
Q 038586 204 SNNNVQTVEFEGEMEHS-LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLC 279 (353)
Q Consensus 204 ~~~~l~~~~l~g~~p~~-l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~ 279 (353)
.+++.+|.. +..+++|++|++++|++++.+| ..+. ++|+.|++++ ..+|..+..
T Consensus 385 --------~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~----------~~L~~L~Ls~N~l~~ip~~~~~ 442 (520)
T 2z7x_B 385 --------SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF----RCLP----------PRIKVLDLHSNKIKSIPKQVVK 442 (520)
T ss_dssp --------CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG----GSCC----------TTCCEEECCSSCCCCCCGGGGG
T ss_pred --------cCCcccccchhccCccCCEEECcCCCCCcchh----hhhc----------ccCCEEECCCCcccccchhhhc
Confidence 666555554 6778888889999888887666 3322 6899999998 789998889
Q ss_pred CCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCccccccccc-ccc
Q 038586 280 LDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQA-VAW 330 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~-~~~ 330 (353)
+++|++|++++|++..+|.. .|..++.|+.|+...++..+.|...+. ..|
T Consensus 443 l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 493 (520)
T 2z7x_B 443 LEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493 (520)
T ss_dssp CTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred CCCCCEEECCCCcCCccCHH-HhccCCcccEEECcCCCCcccCCchHHHHHH
Confidence 99999999999999889982 388999999999999999999986665 456
No 46
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=5.7e-19 Score=180.92 Aligned_cols=227 Identities=15% Similarity=0.079 Sum_probs=160.6
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCC-cccCCCCCCcEEeccC---CCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVP-EFVGSLSKLSLNTVDH---QGEIIHS 148 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P-~~~~~L~~L~~L~Ls~---~~~lP~~ 148 (353)
.++.+++++ |.+++..|..+..+ ++| ++|++++|.+++. +| ..+.++++|++|++++ .+..|..
T Consensus 382 ~L~~L~L~~--------n~l~~~~~~~~~~l-~~L--~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 449 (680)
T 1ziw_A 382 PLHILNLTK--------NKISKIESDAFSWL-GHL--EVLDLGLNEIGQE-LTGQEWRGLENIFEIYLSYNKYLQLTRNS 449 (680)
T ss_dssp CCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECCSSCCEEE-CCSGGGTTCTTCCEEECCSCSEEECCTTT
T ss_pred cCceEECCC--------CCCCeEChhhhhCC-CCC--CEEeCCCCcCccc-cCcccccCcccccEEecCCCCcceeChhh
Confidence 678888888 77877777777777 888 8888888888765 55 5677788888888877 3334556
Q ss_pred CCCCCCCCEEEccCcccc--eecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCccccce-----eee--
Q 038586 149 VPEYPTLFDVEGYMASLV--QILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQTVEF-----EGE-- 216 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~--g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~~~l-----~g~-- 216 (353)
+..+++|++|++++|.+. +.+|.. +..+.. ++.+++++|+++.++.. ....++.+.+ ++.
T Consensus 450 ~~~~~~L~~L~l~~n~l~~~~~~p~~-------~~~l~~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~ 521 (680)
T 1ziw_A 450 FALVPSLQRLMLRRVALKNVDSSPSP-------FQPLRN-LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521 (680)
T ss_dssp TTTCTTCCEEECTTSCCBCTTCSSCT-------TTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGS
T ss_pred hhcCcccccchhccccccccccCCcc-------cccCCC-CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccch
Confidence 667777777777777665 344544 444444 55556666555554432 1222222222 211
Q ss_pred ------CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEE
Q 038586 217 ------MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEI 286 (353)
Q Consensus 217 ------~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L 286 (353)
.+..+.++++|++|++++|+++...+ ..++ ++++|+.|++++ ..+|.. +..+++|++|
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~----~~~~--------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 589 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPV----EVFK--------DLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred hhccCCcchhhcCCCCCCEEECCCCCCCCCCH----HHcc--------cccCcceeECCCCCCCcCCHhHhCCCCCCCEE
Confidence 12347889999999999999986444 5677 899999999998 666665 6789999999
Q ss_pred EccCCCCCCCCcccccc-cCcccchhccccCCCcccccc-cccccccc
Q 038586 287 VESEVEIDSLPDRLVFD-VREFLSELDQIAEPRDEECGK-LQAVAWEE 332 (353)
Q Consensus 287 ~Ls~N~l~~iP~~~~~~-~l~~L~~Ld~~~~~~~~~c~~-l~~~~~~~ 332 (353)
++++|++..+|+. .|+ .++.|+.++...++..+.|.. .+...|.+
T Consensus 590 ~L~~N~l~~~~~~-~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 590 NLQKNLITSVEKK-VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp ECTTSCCCBCCHH-HHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred ECCCCcCCccChh-HhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 9999999666552 566 788999999999999999996 55566743
No 47
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.5e-18 Score=155.03 Aligned_cols=180 Identities=12% Similarity=0.056 Sum_probs=150.9
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
++++++++.++. +|..+. +++++|+|++ . +..|..++++++|++|++++|.+++..|.. +..+..
T Consensus 17 ~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~- 84 (251)
T 3m19_A 17 KEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV-------FDDLTE- 84 (251)
T ss_dssp TEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTT-
T ss_pred eEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH-------hccCCc-
Confidence 889999999998 788776 6999999999 4 444557999999999999999999877766 677777
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
+++|++++| .+++..+..+..+++|++|++++|++++..+ ..++ .+++|+.|
T Consensus 85 L~~L~L~~n----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 136 (251)
T 3m19_A 85 LGTLGLANN----------------QLASLPLGVFDHLTQLDKLYLGGNQLKSLPS----GVFD--------RLTKLKEL 136 (251)
T ss_dssp CCEEECTTS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEE
T ss_pred CCEEECCCC----------------cccccChhHhcccCCCCEEEcCCCcCCCcCh----hHhc--------cCCcccEE
Confidence 999999999 6666666778899999999999999997666 6677 89999999
Q ss_pred ecCC---CCCch-hhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccCCCccc-ccccccccc
Q 038586 267 LLAQ---QNDPI-ELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEE-CGKLQAVAW 330 (353)
Q Consensus 267 ~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~-c~~l~~~~~ 330 (353)
++++ ..+|. .+..+++|++|+|++|++..+|+. .|..++.|+.|+...++..+. |...+...|
T Consensus 137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~ 204 (251)
T 3m19_A 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-AFDRLGKLQTITLFGNQFDCSRCEILYLSQW 204 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSCCBCTTSTTHHHHHHH
T ss_pred ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH-HHhCCCCCCEEEeeCCceeCCccccHHHHHH
Confidence 9999 55665 688999999999999999555542 688999999999988888777 665444455
No 48
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=166.74 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=109.5
Q ss_pred cCCcccccHHH--HHhhccccccEEEeecCCCCCCCCC----cccCCCCCCcEEeccC--C-CCCCCCCCCCCCCCEEEc
Q 038586 90 KILKGTISSAL--LLCLNCMIYDIWTLVTINFGGIPVP----EFVGSLSKLSLNTVDH--Q-GEIIHSVPEYPTLFDVEG 160 (353)
Q Consensus 90 ~~l~g~lp~~l--~~L~~~L~~~~L~Ls~N~l~~~~~P----~~~~~L~~L~~L~Ls~--~-~~lP~~l~~L~~L~~L~L 160 (353)
|.+.+.+|..+ ..+ ++| ++|++++|.+++. .| ..+..+++|++|+|++ . +..|..++++++|++|++
T Consensus 101 n~l~~~~~~~~~~~~~-~~L--~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 176 (310)
T 4glp_A 101 LKITGTMPPLPLEATG-LAL--SSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDL 176 (310)
T ss_dssp CCCBSCCCCCSSSCCC-BCC--SSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEEC
T ss_pred CEeccchhhhhhhccC-CCC--CEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEEC
Confidence 55555555444 444 555 5555555555543 33 1233455555555555 2 222334555555555555
Q ss_pred cCccccee--cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee--eCCc-chhccCCCCEEEcccC
Q 038586 161 YMASLVQI--LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG--EMEH-SLSEVYDIFDVERYSS 235 (353)
Q Consensus 161 s~N~l~g~--lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g--~~p~-~l~~l~~L~~L~Ls~N 235 (353)
++|++.+. ++... ..+.+.. ++++++++| +++. ..+. .++.+++|++|++++|
T Consensus 177 s~N~l~~~~~~~~~~-----~~~~l~~-L~~L~Ls~N----------------~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 177 SDNPGLGERGLMAAL-----CPHKFPA-IQNLALRNT----------------GMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CSCTTCHHHHHHTTS-----CTTSSCC-CCSCBCCSS----------------CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred CCCCCccchhhhHHH-----hhhcCCC-CCEEECCCC----------------CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 55554331 11110 0122333 556666666 4431 1122 2467899999999999
Q ss_pred cCcccCCCCCccccchhhhhcccCC---CccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccc
Q 038586 236 SLDQILESERTEDHGDAAIQNKQQE---AVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLS 309 (353)
Q Consensus 236 ~l~g~~p~~~~~~~~~~~~~~~~~l---~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~ 309 (353)
++.+..| ..++ .+ ++|++|++++ ..+|..+. ++|++|++++|++..+|. +..++.|+
T Consensus 235 ~l~~~~p----~~~~--------~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~---~~~l~~L~ 297 (310)
T 4glp_A 235 SLRATVN----PSAP--------RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ---PDELPEVD 297 (310)
T ss_dssp CCCCCCC----SCCS--------SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC---TTSCCCCS
T ss_pred CCCccch----hhHH--------hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch---hhhCCCcc
Confidence 9988777 5666 44 6899999988 67777764 799999999999976655 56677888
Q ss_pred hhccccCC
Q 038586 310 ELDQIAEP 317 (353)
Q Consensus 310 ~Ld~~~~~ 317 (353)
.|+...++
T Consensus 298 ~L~L~~N~ 305 (310)
T 4glp_A 298 NLTLDGNP 305 (310)
T ss_dssp CEECSSTT
T ss_pred EEECcCCC
Confidence 87765554
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=3.6e-19 Score=178.79 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=111.7
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-----CCCCCcc-----ccceeeeCCc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-----SSNNNVQ-----TVEFEGEMEH 219 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-----~~~~~l~-----~~~l~g~~p~ 219 (353)
+.+++|++|++++|++++.+|.. +..+.. ++++++++|+++.++. .....++ ...+++.+|.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-------CSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-------CCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cCCCCceEEECCCCccccchhhh-------hcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 45566666666666666555544 444444 5666666665554331 1112222 2255554554
Q ss_pred -chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 220 -SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 220 -~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
.+..+++|++|++++|++++.+| ..++ ++|+.|++++ ..+|..+..+++|++|++++|++..
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~----~~l~----------~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVF----RCLP----------PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGG----SSCC----------TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC
T ss_pred hhhcCcccCCEEECCCCCCCcchh----hhhc----------CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC
Confidence 36778888889998888877666 3221 6899999998 7899988899999999999999988
Q ss_pred CCcccccccCcccchhccccCCCccccccccccc-c
Q 038586 296 LPDRLVFDVREFLSELDQIAEPRDEECGKLQAVA-W 330 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~-~ 330 (353)
+|+. .|..++.|+.|+...++..+.|...+.+. |
T Consensus 488 l~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~ 522 (562)
T 3a79_B 488 VPDG-VFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 522 (562)
T ss_dssp CCTT-STTTCTTCCCEECCSCCBCCCHHHHHHHHHH
T ss_pred CCHH-HHhcCCCCCEEEecCCCcCCCcchHHHHHHH
Confidence 9982 38999999999999999999998766655 5
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=4.9e-19 Score=155.02 Aligned_cols=181 Identities=9% Similarity=0.038 Sum_probs=136.5
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEe
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNT 138 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~ 138 (353)
.|.|.+|.|.. ++++ .+|..+ . ++| ++|++++|.+++. .+..+..+++|++|+
T Consensus 6 ~C~~~~v~c~~--------------------~~l~-~~p~~~--~-~~l--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 58 (208)
T 2o6s_A 6 SCSGTTVECYS--------------------QGRT-SVPTGI--P-AQT--TYLDLETNSLKSL-PNGVFDELTSLTQLY 58 (208)
T ss_dssp EEETTEEECCS--------------------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCSEEE
T ss_pred EECCCEEEecC--------------------CCcc-CCCCCC--C-CCC--cEEEcCCCccCcC-ChhhhcccccCcEEE
Confidence 47899999964 3333 344322 3 677 8999999999875 455678899999999
Q ss_pred ccC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee
Q 038586 139 VDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG 215 (353)
Q Consensus 139 Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g 215 (353)
+++ ...+|.. +.++++|++|++++|++++..+.. +..+.. ++++++++| ++++
T Consensus 59 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~-L~~L~L~~N----------------~l~~ 114 (208)
T 2o6s_A 59 LGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV-------FDKLTQ-LKELALNTN----------------QLQS 114 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCC
T ss_pred CCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH-------hcCccC-CCEEEcCCC----------------cCcc
Confidence 988 5566654 578899999999999888554444 556666 888999999 6665
Q ss_pred eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEEEccCCCC-C
Q 038586 216 EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEIVESEVEI-D 294 (353)
Q Consensus 216 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l-~ 294 (353)
..+..+..+++|++|++++|++++..+ ..++ .+++|+.|++++..+ ...+++|+.|+++.|++ |
T Consensus 115 ~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~--------~l~~L~~L~l~~N~~---~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 115 LPDGVFDKLTQLKDLRLYQNQLKSVPD----GVFD--------RLTSLQYIWLHDNPW---DCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCT----TTTT--------TCTTCCEEECCSCCB---CCCTTTTHHHHHHHHHCTT
T ss_pred cCHhHhccCCcCCEEECCCCccceeCH----HHhc--------cCCCccEEEecCCCe---ecCCCCHHHHHHHHHhCCc
Confidence 555667889999999999999987666 5577 888999999988432 24567889999999999 8
Q ss_pred CCCcccccccCcc
Q 038586 295 SLPDRLVFDVREF 307 (353)
Q Consensus 295 ~iP~~~~~~~l~~ 307 (353)
.+|+ .++.++.
T Consensus 180 ~ip~--~~~~l~~ 190 (208)
T 2o6s_A 180 VVRN--SAGSVAP 190 (208)
T ss_dssp TBBC--TTSSBCT
T ss_pred eeec--cCccccC
Confidence 9998 6666543
No 51
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=8.1e-20 Score=170.23 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=123.7
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC-------CC
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG-------SL 131 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-------~L 131 (353)
|+.+..+.......+++.+++++ |.+ .+|..+... | ++|++++|.++...+|..+. ++
T Consensus 30 c~~~~~~~~~~~~~~L~~l~l~~--------n~l--~~p~~~~~~---L--~~L~L~~n~l~~~~~~~~~~~~~~~~~~l 94 (312)
T 1wwl_A 30 CLGAADVELYGGGRSLEYLLKRV--------DTE--ADLGQFTDI---I--KSLSLKRLTVRAARIPSRILFGALRVLGI 94 (312)
T ss_dssp SSSCSEEEEEEEEEECTTHHHHC--------CTT--CCCHHHHHH---H--HHCCCCEEEEEEEECBHHHHHHHHHHHTT
T ss_pred hhccccEEEEccCCCceeEeecc--------ccc--ccHHHHHHH---H--hhcccccccccCCCcCHHHHHHHHHhcCc
Confidence 44454443322223566677777 777 677765532 5 77788888874333676665 68
Q ss_pred CCCcEEeccC---CCCCCCCC--CCCCCCCEEEccCcccceecCccccccCCCcCCC-----CccccceeccCCcCCCCC
Q 038586 132 SKLSLNTVDH---QGEIIHSV--PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQ-----GAEAEAVCIQHNQANDIP 201 (353)
Q Consensus 132 ~~L~~L~Ls~---~~~lP~~l--~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l-----~~~l~~l~l~~N~l~~i~ 201 (353)
++|++|++++ .+.+|..+ +.+++|++|++++|++++. |.. ++.+ .. ++++++++|++..++
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~-------~~~l~~~~~~~-L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAW-------LAELQQWLKPG-LKVLSIAQAHSLNFS 165 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSH-------HHHHHTTCCTT-CCEEEEESCSCCCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHH-------HHHHHHhhcCC-CcEEEeeCCCCccch
Confidence 8888888888 55777765 7888888888888888765 544 3333 44 788888888665554
Q ss_pred CC---CCCCccccceeee-------CCcch--hccCCCCEEEcccCcCccc--CCCCCccccchhhhhcccCCCccceee
Q 038586 202 CS---SNNNVQTVEFEGE-------MEHSL--SEVYDIFDVERYSSSLDQI--LESERTEDHGDAAIQNKQQEAVEEEAL 267 (353)
Q Consensus 202 ~~---~~~~l~~~~l~g~-------~p~~l--~~l~~L~~L~Ls~N~l~g~--~p~~~~~~~~~~~~~~~~~l~~L~~L~ 267 (353)
.. ....++.+.+.+. +|..+ ..+++|++|++++|++++. ++ ...+. .+++|+.|+
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~~~~--------~l~~L~~L~ 234 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC---SALAA--------ARVQLQGLD 234 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH---HHHHH--------TTCCCSEEE
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH---HHHHh--------cCCCCCEEE
Confidence 22 1223333333221 12233 5555666666666655421 11 01112 455666666
Q ss_pred cCC----CCCc-hhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 268 LAQ----QNDP-IELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 268 L~~----~~iP-~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
+++ +.+| ..+..+++|++|++++|+++.+|. .+. +.|+.||..
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~~L~~L~Ls 282 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--AKLSVLDLS 282 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--SEEEEEECC
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--CCceEEECC
Confidence 666 2222 233445666666666666666666 333 555555543
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=180.18 Aligned_cols=212 Identities=15% Similarity=0.143 Sum_probs=149.9
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC---CCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE---IIH 147 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~---lP~ 147 (353)
+++.|++++ +.+. .+|. ..+ ++| ++|++++|.+.+. +|. ..+++|++|++++ ... +|.
T Consensus 305 ~L~~L~l~~--------n~~~-~l~~--~~l-~~L--~~L~l~~n~~~~~-~~~--~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 305 GWQHLELVN--------CKFG-QFPT--LKL-KSL--KRLTFTSNKGGNA-FSE--VDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp CCSEEEEES--------CBCS-SCCB--CBC-SSC--CEEEEESCBSCCB-CCC--CBCTTCCEEECCSSCCBEEEEEEH
T ss_pred CccEEeecc--------Cccc-ccCc--ccc-ccc--CEEeCcCCccccc-ccc--ccCCCCCEEeCcCCccCccccccc
Confidence 566777777 6665 5554 345 666 7777777766654 333 5666677777666 221 244
Q ss_pred CCCCCCCCCEEEccCccccee------cCccccccCCCc-----------CCCCccccceeccCCcCCCCCCCCCCCccc
Q 038586 148 SVPEYPTLFDVEGYMASLVQI------LEKDQHDEGSQN-----------GQQGAEAEAVCIQHNQANDIPCSSNNNVQT 210 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~------lp~~~~L~l~~~-----------~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~ 210 (353)
.+..+++|++|++++|.+.+. ++.+++|+++++ ..+.. ++++++++|
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n--------------- 431 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHT--------------- 431 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT-CCEEECTTS---------------
T ss_pred cccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC-CCEEeCcCC---------------
Confidence 556666666666666665532 122233333222 22233 455566666
Q ss_pred cceeeeCCcchhccCCCCEEEcccCcCc-ccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCE
Q 038586 211 VEFEGEMEHSLSEVYDIFDVERYSSSLD-QILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILE 285 (353)
Q Consensus 211 ~~l~g~~p~~l~~l~~L~~L~Ls~N~l~-g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~ 285 (353)
.+.+..|..+..+++|++|++++|++. +.+| ..++ .+++|+.|++++ +..|..+..+++|++
T Consensus 432 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 432 -HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP----DIFT--------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp -CCEECCTTTTTTCTTCCEEECTTCEEGGGEEC----SCCT--------TCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -cccccchhhhhcCCcCcEEECcCCcCccccch----hhhh--------cccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 777888889999999999999999997 6788 7888 899999999998 444778999999999
Q ss_pred EEccCCCCCCCCcccccccCcccchhccccCCCcccccccccc-ccc
Q 038586 286 IVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAV-AWE 331 (353)
Q Consensus 286 L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~-~~~ 331 (353)
|++++|++..+|+. .|..++.|+.|+...++..+.|...+.+ .|-
T Consensus 499 L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl 544 (570)
T 2z63_A 499 LNMASNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 544 (570)
T ss_dssp EECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred EeCCCCcCCCCCHH-HhhcccCCcEEEecCCcccCCCcchHHHHHHH
Confidence 99999999544431 6899999999999999999999988877 773
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.78 E-value=1.8e-19 Score=182.11 Aligned_cols=191 Identities=13% Similarity=-0.018 Sum_probs=155.6
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIHS 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~~ 148 (353)
.+++.|++++ |.+++..+..|.++ ++| ++|++++|.+++. .|..|+++++|++|+|++ . +..|..
T Consensus 32 ~~l~~L~Ls~--------n~l~~~~~~~~~~l-~~L--~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 32 SSTKNIDLSF--------NPLKILKSYSFSNF-SEL--QWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TTCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCcCEEECCC--------CCcCEeChhhccCC-ccC--cEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhh
Confidence 5799999999 99997777789999 999 9999999999997 688899999999999998 4 444888
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDI 227 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L 227 (353)
|+++++|++|++++|.+++..|.. ++.+.. ++++++++| .+++ .+|..++++++|
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~-L~~L~L~~n----------------~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFP-------IGQLIT-LKKLNVAHN----------------FIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSC-------CTTCTT-CCEEECCSS----------------CCCCCCCCGGGGTCTTC
T ss_pred cCCcccCCEEEccCCccccccccc-------cCCCCC-CCEEeCCCC----------------cccceechHhHhhcCCC
Confidence 999999999999999998665566 677777 999999999 6664 578999999999
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccc----eeecCC---CCCchhhcCCCCCCEEEccCCCC--CCCCc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEE----EALLAQ---QNDPIELLCLDNILEIVESEVEI--DSLPD 298 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~----~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l--~~iP~ 298 (353)
++|++++|++++..| ..++ .++.|+ .+++++ ..+|.......+|++|++++|.+ +.+|.
T Consensus 156 ~~L~Ls~n~l~~~~~----~~~~--------~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~ 223 (606)
T 3vq2_A 156 VHVDLSYNYIQTITV----NDLQ--------FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223 (606)
T ss_dssp CEEECCSSCCCEECT----TTTH--------HHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHH
T ss_pred CEEEccCCcceecCh----hhhh--------hhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHH
Confidence 999999999998777 6666 555554 788888 45565555556899999999988 34555
Q ss_pred ccccccCcccchhc
Q 038586 299 RLVFDVREFLSELD 312 (353)
Q Consensus 299 ~~~~~~l~~L~~Ld 312 (353)
.++.++.++.++
T Consensus 224 --~~~~l~~L~~l~ 235 (606)
T 3vq2_A 224 --CLQNLAGLHVHR 235 (606)
T ss_dssp --HHHTTTTCEEEE
T ss_pred --Hhcccccccccc
Confidence 556666555443
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=2.5e-18 Score=161.24 Aligned_cols=211 Identities=10% Similarity=0.033 Sum_probs=158.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC-CCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE-IIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~-lP~~l 149 (353)
+++.+++++ ++++ .+|..+ . ++| ++|++++|.+++. .|..|.++++|++|++++ ... .|..+
T Consensus 34 ~l~~l~~~~--------~~l~-~ip~~~--~-~~l--~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSD--------LGLK-AVPKEI--S-PDT--TLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCS--------SCCS-SCCSCC--C-TTC--CEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred cCCEEECCC--------CCcc-ccCCCC--C-CCC--eEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence 467789999 8887 788654 3 788 9999999999986 577899999999999998 444 47789
Q ss_pred CCCCCCCEEEccCcccceecC-----ccccccCCCcC----------CCCccccceeccCCcCCC--CCCCC--CCCccc
Q 038586 150 PEYPTLFDVEGYMASLVQILE-----KDQHDEGSQNG----------QQGAEAEAVCIQHNQAND--IPCSS--NNNVQT 210 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp-----~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~--i~~~~--~~~l~~ 210 (353)
+++++|++|++++|+++ .+| .+++|+++++. .+.. ++.+++++|+++. +.... ...++.
T Consensus 99 ~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l~L~~ 176 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNY 176 (332)
T ss_dssp TTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSCCCSC
T ss_pred hCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCCccCE
Confidence 99999999999999987 444 45677766542 2333 5677777777653 21111 113333
Q ss_pred cceee----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCC-chhhcCCCC
Q 038586 211 VEFEG----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QND-PIELLCLDN 282 (353)
Q Consensus 211 ~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~i-P~~l~~l~~ 282 (353)
+.+.+ .+|..+. ++|++|++++|++++..| ..++ .+++|+.|++++ ..+ |..+..+++
T Consensus 177 L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~----~~l~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIEL----EDLL--------RYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp CBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCT----TSST--------TCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred EECcCCCCCccCcccc--CCCCEEECCCCcCCccCH----HHhc--------CCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 33222 2444443 678888888888887777 6777 899999999998 344 457889999
Q ss_pred CCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 283 ILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 283 L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
|++|++++|++..+|. .+..++.|+.|+...+
T Consensus 243 L~~L~L~~N~l~~lp~--~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 243 LRELHLDNNKLSRVPA--GLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCEEECCSSCCCBCCT--TGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCeecCh--hhhcCccCCEEECCCC
Confidence 9999999999999999 8999999999986544
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=5.7e-19 Score=185.66 Aligned_cols=218 Identities=13% Similarity=0.046 Sum_probs=127.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l~ 166 (353)
|.+++..|..+..+ ++| ++|+|++|.+++. .|..|..+++|++|++++ ...++ ..+.++++|++|++++|.++
T Consensus 300 n~i~~~~~~~~~~l-~~L--~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 300 NKINKIADEAFYGL-DNL--QVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CCCCEECTTTTTTC-SSC--CEEEEESCCCSCC-CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred CcCCCCChHHhcCC-CCC--CEEECCCCCCCcc-CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 66666666666667 777 7777777777765 566677777777777776 44443 34666777777777777765
Q ss_pred e--ecCccccccCCCcCC-------------------------------CCccccceeccCCcCCCCCCC----CCCCcc
Q 038586 167 Q--ILEKDQHDEGSQNGQ-------------------------------QGAEAEAVCIQHNQANDIPCS----SNNNVQ 209 (353)
Q Consensus 167 g--~lp~~~~L~l~~~~~-------------------------------l~~~l~~l~l~~N~l~~i~~~----~~~~l~ 209 (353)
+ .+|.++.++++++.. +.. ++.+++++|+++.++.. ....++
T Consensus 376 ~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~L~ 454 (844)
T 3j0a_A 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLE 454 (844)
T ss_dssp CCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCCCCCCCSSSSSCSCTTCC
T ss_pred cccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCc-cceeeCCCCcccccccccccccCCccc
Confidence 3 233444444443321 122 34455555554433211 112233
Q ss_pred cccee----------eeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh
Q 038586 210 TVEFE----------GEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE 276 (353)
Q Consensus 210 ~~~l~----------g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~ 276 (353)
.+.+. +..|..+..+++|++|+|++|++++..| ..++ .+++|+.|++++ ..+|+.
T Consensus 455 ~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~l~~~ 522 (844)
T 3j0a_A 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP----GVFS--------HLTALRGLSLNSNRLTVLSHN 522 (844)
T ss_dssp BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCT----TSSS--------SCCSCSEEEEESCCCSSCCCC
T ss_pred cccCCCCccccccccccchhhhcCcccccEEECCCCcccccCh----hHcc--------chhhhheeECCCCCCCccChh
Confidence 32222 2233445666666667777666666665 5556 677777777776 334433
Q ss_pred hcCCCCCCEEEccCCCC-CCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 277 LLCLDNILEIVESEVEI-DSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 277 l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
... ++|+.|++++|++ +..|. .|. .|+.++...++..+.|...+...|
T Consensus 523 ~~~-~~L~~L~Ls~N~l~~~~~~--~~~---~L~~l~l~~Np~~C~c~~~~f~~~ 571 (844)
T 3j0a_A 523 DLP-ANLEILDISRNQLLAPNPD--VFV---SLSVLDITHNKFICECELSTFINW 571 (844)
T ss_dssp CCC-SCCCEEEEEEECCCCCCSC--CCS---SCCEEEEEEECCCCSSSCCSHHHH
T ss_pred hhh-ccccEEECCCCcCCCCChh--HhC---CcCEEEecCCCcccccccHHHHHH
Confidence 222 6677777777777 55555 443 566677777888888886555555
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.76 E-value=9.2e-19 Score=163.40 Aligned_cols=190 Identities=9% Similarity=0.009 Sum_probs=147.4
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCCCCCCCCCCEEEccCcccce-----ecCccccccCCCcC
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHSVPEYPTLFDVEGYMASLVQ-----ILEKDQHDEGSQNG 181 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~l~~L~~L~~L~Ls~N~l~g-----~lp~~~~L~l~~~~ 181 (353)
+..+++.+.+... .+..+..+++|++|+|++ ...+ |..++++++|++|++++|.+++ .++.+++|+++++.
T Consensus 13 ~i~~ls~~~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 13 KIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY 91 (317)
T ss_dssp EEESCCTTTHHHH-HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE
T ss_pred eEeeccccchhhh-HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc
Confidence 5666667766553 344566788999999999 4444 4678999999999999999985 45678899998874
Q ss_pred CC-----CccccceeccCCcCCCCCCCCCCCccccc-----eeeeCCcchhccCCCCEEEcccCcCcccCCCCCcccc-c
Q 038586 182 QQ-----GAEAEAVCIQHNQANDIPCSSNNNVQTVE-----FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDH-G 250 (353)
Q Consensus 182 ~l-----~~~l~~l~l~~N~l~~i~~~~~~~l~~~~-----l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~-~ 250 (353)
.. .. ++++++++|+++.++......++.+. +++..|..++.+++|++|++++|++++..| ..+ +
T Consensus 92 l~~l~~~~~-L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~ 166 (317)
T 3o53_A 92 VQELLVGPS-IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----AELAA 166 (317)
T ss_dssp EEEEEECTT-CCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG----GGGGG
T ss_pred cccccCCCC-cCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH----HHHhh
Confidence 33 33 78899999999887665555555444 444556688889999999999999988666 444 3
Q ss_pred hhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 251 DAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
.+++|+.|++++ ..+|. ...+++|++|++++|++..+|+ .+..++.|+.|+...+
T Consensus 167 --------~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 167 --------SSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNN 224 (317)
T ss_dssp --------GTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTS
T ss_pred --------ccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCC
Confidence 689999999999 33443 3358999999999999988998 7899999999987554
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=2.1e-18 Score=159.68 Aligned_cols=190 Identities=9% Similarity=0.008 Sum_probs=143.6
Q ss_pred CcEEEEEcCCCCCccccccCCc--ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-
Q 038586 72 SHFKVLNLRSSNDENARRKILK--GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII- 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~--g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP- 146 (353)
.+++.|++++ |.++ |.+|..+..+ ++| ++|++++|.++. +|..+..+++|++|++++ ...++
T Consensus 52 ~~L~~L~L~~--------n~l~~~~~~~~~~~~~-~~L--~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~ 118 (306)
T 2z66_A 52 TQLTKLSLSS--------NGLSFKGCCSQSDFGT-TSL--KYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSE 118 (306)
T ss_dssp TTCSEEECCS--------SCCCEEEEEEHHHHSC-SCC--CEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESSTT
T ss_pred ccCCEEECCC--------CccCcccCcccccccc-ccc--CEEECCCCcccc--ChhhcCCCCCCCEEECCCCccccccc
Confidence 4788899999 7776 4457778888 899 999999999886 788888899999999988 44444
Q ss_pred -CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCC--CCCC--CCCCc-----cccceeee
Q 038586 147 -HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQAND--IPCS--SNNNV-----QTVEFEGE 216 (353)
Q Consensus 147 -~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~--i~~~--~~~~l-----~~~~l~g~ 216 (353)
..+.++++|++|++++|.+.+..|.. +..+.. ++++++++|++.+ +|.. ....+ ....+++.
T Consensus 119 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 119 FSVFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp TTTTTTCTTCCEEECTTSCCEECSTTT-------TTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred chhhhhccCCCEEECCCCcCCccchhh-------cccCcC-CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence 46788889999999998887665544 444444 5555555555443 2211 11122 22267777
Q ss_pred CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCC-CCCCEEEccCC
Q 038586 217 MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCL-DNILEIVESEV 291 (353)
Q Consensus 217 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l-~~L~~L~Ls~N 291 (353)
.|..+..+++|++|++++|++++..+ ..++ .+++|+.|++++ +..|..+..+ ++|++|++++|
T Consensus 191 ~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 191 SPTAFNSLSSLQVLNMSHNNFFSLDT----FPYK--------CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCCS----GGGT--------TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CHHHhcCCCCCCEEECCCCccCccCh----hhcc--------CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 78899999999999999999998766 6677 899999999999 5567778888 49999999999
Q ss_pred CCC
Q 038586 292 EID 294 (353)
Q Consensus 292 ~l~ 294 (353)
.+.
T Consensus 259 ~~~ 261 (306)
T 2z66_A 259 DFA 261 (306)
T ss_dssp CEE
T ss_pred Cee
Confidence 993
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=179.50 Aligned_cols=219 Identities=13% Similarity=0.020 Sum_probs=133.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcc--cCCCCCCcEEeccC--CCCC--C
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEF--VGSLSKLSLNTVDH--QGEI--I 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~--~~~L~~L~~L~Ls~--~~~l--P 146 (353)
+++.|+|++ |.+.+..|..|..+ ++| ++|+|++|.+++. +|.. ++++++|++|+|++ ...+ +
T Consensus 74 ~L~~L~Ls~--------N~l~~~~p~~~~~l-~~L--~~L~Ls~n~l~~~-~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~ 141 (844)
T 3j0a_A 74 NLRILDLGS--------SKIYFLHPDAFQGL-FHL--FELRLYFCGLSDA-VLKDGYFRNLKALTRLDLSKNQIRSLYLH 141 (844)
T ss_dssp TCCEEECTT--------CCCCEECTTSSCSC-SSC--CCEECTTCCCSSC-CSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred CCCEEECCC--------CcCcccCHhHccCC-ccc--CEeeCcCCCCCcc-cccCccccccCCCCEEECCCCcccccccc
Confidence 445555555 55555555555566 666 6666666666554 4443 55666666666665 2222 2
Q ss_pred CCCCCCCCCCEEEccCcccceec---------CccccccCCCcCCCCc---------------cccceeccCCcCCC-CC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQIL---------EKDQHDEGSQNGQQGA---------------EAEAVCIQHNQAND-IP 201 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~l---------p~~~~L~l~~~~~l~~---------------~l~~l~l~~N~l~~-i~ 201 (353)
..++++++|++|++++|.+++.. +.+++|+++.+..... .++.+++++|++.. ++
T Consensus 142 ~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 221 (844)
T 3j0a_A 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221 (844)
T ss_dssp GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT
T ss_pred hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHH
Confidence 34566666666666666654422 2344445444422211 14566666665432 11
Q ss_pred CC----------------------------------------CCCCcc-----ccceeeeCCcchhccCCCCEEEcccCc
Q 038586 202 CS----------------------------------------SNNNVQ-----TVEFEGEMEHSLSEVYDIFDVERYSSS 236 (353)
Q Consensus 202 ~~----------------------------------------~~~~l~-----~~~l~g~~p~~l~~l~~L~~L~Ls~N~ 236 (353)
.. ....++ ...+.+..|..+..+++|+.|++++|+
T Consensus 222 ~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC
T ss_pred HHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc
Confidence 00 001122 223445567778888888999999888
Q ss_pred CcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhc
Q 038586 237 LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELD 312 (353)
Q Consensus 237 l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld 312 (353)
+++..| ..++ .+++|+.|++++ +..|..+..+++|++|++++|.++.+|+. .|..++.|+.|+
T Consensus 302 i~~~~~----~~~~--------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~ 368 (844)
T 3j0a_A 302 INKIAD----EAFY--------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-TFKFLEKLQTLD 368 (844)
T ss_dssp CCEECT----TTTT--------TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSS-CSCSCCCCCEEE
T ss_pred CCCCCh----HHhc--------CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChh-hhcCCCCCCEEE
Confidence 888777 7777 888899999888 33466788888999999999988665542 678888888887
Q ss_pred cccC
Q 038586 313 QIAE 316 (353)
Q Consensus 313 ~~~~ 316 (353)
...+
T Consensus 369 Ls~N 372 (844)
T 3j0a_A 369 LRDN 372 (844)
T ss_dssp EETC
T ss_pred CCCC
Confidence 6443
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.1e-17 Score=163.66 Aligned_cols=181 Identities=15% Similarity=0.032 Sum_probs=152.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-C
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-S 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~ 148 (353)
.+++.|+|++ |.+++..|..|..+ ++| ++|+|++|.+++. .+..|..+++|++|+|++ ...+|. .
T Consensus 99 ~~L~~L~Ls~--------n~i~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 166 (452)
T 3zyi_A 99 HHLEVLQLGR--------NSIRQIEVGAFNGL-ASL--NTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYA 166 (452)
T ss_dssp TTCCEEECCS--------SCCCEECTTTTTTC-TTC--CEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTT
T ss_pred CCCCEEECCC--------CccCCcChhhccCc-ccC--CEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhH
Confidence 4789999999 89987777888899 999 9999999999985 555689999999999998 666665 6
Q ss_pred CCCCCCCCEEEccCcccce--------ecCccccccCCCcCCC--------CccccceeccCCcCCCCCCCCCCCccccc
Q 038586 149 VPEYPTLFDVEGYMASLVQ--------ILEKDQHDEGSQNGQQ--------GAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g--------~lp~~~~L~l~~~~~l--------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
+.++++|++|++++|+..+ .++.+++|+++++... .. ++.|++++| .
T Consensus 167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~-L~~L~Ls~N----------------~ 229 (452)
T 3zyi_A 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG-LEELEMSGN----------------H 229 (452)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTT-CCEEECTTS----------------C
T ss_pred HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccccccc-ccEEECcCC----------------c
Confidence 7889999999999855333 3456788888876433 34 788899999 8
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~L 288 (353)
+++..|..|.++++|++|++++|++++..| ..+. .+++|+.|++++ ..+|. .+..+++|+.|++
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIER----NAFD--------GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECH----HHhc--------CCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 888889999999999999999999999888 7888 899999999999 55554 4678999999999
Q ss_pred cCCCC
Q 038586 289 SEVEI 293 (353)
Q Consensus 289 s~N~l 293 (353)
++|.+
T Consensus 298 ~~Np~ 302 (452)
T 3zyi_A 298 HHNPW 302 (452)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 99997
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=162.05 Aligned_cols=181 Identities=13% Similarity=0.005 Sum_probs=152.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-C
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-S 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~ 148 (353)
.+++.|+|++ |.+++..+..|..+ ++| ++|+|++|++++. .+..|..+++|++|+|++ ...+|. .
T Consensus 88 ~~L~~L~Ls~--------n~i~~i~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 155 (440)
T 3zyj_A 88 RHLEILQLSR--------NHIRTIEIGAFNGL-ANL--NTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYA 155 (440)
T ss_dssp SSCCEEECCS--------SCCCEECGGGGTTC-SSC--CEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTT
T ss_pred CCCCEEECCC--------CcCCccChhhccCC-ccC--CEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHH
Confidence 4789999999 89987667788899 999 9999999999985 455799999999999998 566655 6
Q ss_pred CCCCCCCCEEEccCcccce--------ecCccccccCCCcCC--------CCccccceeccCCcCCCCCCCCCCCccccc
Q 038586 149 VPEYPTLFDVEGYMASLVQ--------ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g--------~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
+.++++|++|++++|+..+ .++.+++|+++++.. +.. ++.|++++| .
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~-L~~L~Ls~N----------------~ 218 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIK-LDELDLSGN----------------H 218 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSS-CCEEECTTS----------------C
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcc-cCEEECCCC----------------c
Confidence 7889999999999865333 345678888887643 334 788899999 8
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCch-hhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPI-ELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~-~l~~l~~L~~L~L 288 (353)
+++..|..|.++++|++|++++|++++..+ ..+. .+++|+.|++++ ..+|. .+..+++|+.|+|
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~--------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIER----NAFD--------NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECT----TSST--------TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred cCccChhhhccCccCCEEECCCCceeEECh----hhhc--------CCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 888889999999999999999999999888 7888 999999999999 55554 4678999999999
Q ss_pred cCCCC
Q 038586 289 SEVEI 293 (353)
Q Consensus 289 s~N~l 293 (353)
++|.+
T Consensus 287 ~~Np~ 291 (440)
T 3zyj_A 287 HHNPW 291 (440)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 99997
No 61
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=5.1e-17 Score=159.42 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|++++ +.+++ +| ++..+ ++| ++|++++|.+++ +| ++.+++|++|++++ ...+| ++
T Consensus 43 ~L~~L~Ls~--------n~l~~-~~-~l~~l-~~L--~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~--~~ 103 (457)
T 3bz5_A 43 TLTSLDCHN--------SSITD-MT-GIEKL-TGL--TKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD--VT 103 (457)
T ss_dssp TCCEEECCS--------SCCCC-CT-TGGGC-TTC--SEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC--CT
T ss_pred CCCEEEccC--------CCccc-Ch-hhccc-CCC--CEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee--cC
Confidence 566667766 66654 34 46666 666 666666666666 34 56666666666666 33343 56
Q ss_pred CCCCCCEEEccCcccce
Q 038586 151 EYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g 167 (353)
++++|++|++++|++++
T Consensus 104 ~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp TCTTCCEEECCSSCCSC
T ss_pred CCCcCCEEECCCCcCCe
Confidence 66666666666666653
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=4.7e-18 Score=168.10 Aligned_cols=186 Identities=9% Similarity=0.016 Sum_probs=147.5
Q ss_pred cccHHHHHhhc----cccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCccccee
Q 038586 95 TISSALLLCLN----CMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQI 168 (353)
Q Consensus 95 ~lp~~l~~L~~----~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~ 168 (353)
.+|..+..+ . +| ++|+|++|.+++. .|..|+.+++|++|+|++ ...+++ ++.+++|++|++++|.+++.
T Consensus 21 ~l~~~l~~l-~~~~~~L--~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 95 (487)
T 3oja_A 21 SLKQALASL-RQSAWNV--KELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL 95 (487)
T ss_dssp THHHHHHTT-STTGGGC--CEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE
T ss_pred hhHHHHHHh-cccCCCc--cEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC
Confidence 456666665 4 89 9999999999997 678899999999999999 333443 99999999999999999863
Q ss_pred --cCccccccCCCcCCC-------CccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 169 --LEKDQHDEGSQNGQQ-------GAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 169 --lp~~~~L~l~~~~~l-------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
.|.+++|+++++... .. ++.+++++| .+++..|..++.+++|++|++++|.+++
T Consensus 96 ~~~~~L~~L~L~~N~l~~~~~~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 96 LVGPSIETLHAANNNISRVSCSRGQG-KKNIYLANN----------------KITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp EECTTCCEEECCSSCCCCEEECCCSS-CEEEECCSS----------------CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CCCCCcCEEECcCCcCCCCCccccCC-CCEEECCCC----------------CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 345566666655332 22 455666666 7777778899999999999999999998
Q ss_pred cCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccccC
Q 038586 240 ILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
..| ..+. ..+++|+.|++++ ..+|. ...+++|+.|+|++|.+..+|+ .+..++.|+.|+...+
T Consensus 159 ~~~----~~l~-------~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 159 VNF----AELA-------ASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNN 224 (487)
T ss_dssp EEG----GGGG-------GGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTS
T ss_pred cCh----HHHh-------hhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCC
Confidence 777 5553 1589999999999 33333 4458999999999999988888 7899999999987554
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=6.6e-18 Score=151.00 Aligned_cols=189 Identities=13% Similarity=0.020 Sum_probs=138.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCC-CCCCCCCcccCCCCCCcEEecc--C-CCCCC-
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTIN-FGGIPVPEFVGSLSKLSLNTVD--H-QGEII- 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-l~~~~~P~~~~~L~~L~~L~Ls--~-~~~lP- 146 (353)
..++.|++++ |++++..+..+..+ ++| ++|++++|. +++. .+..|.++++|++|+++ + ...+|
T Consensus 31 ~~l~~L~l~~--------n~l~~i~~~~~~~l-~~L--~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 31 PSTQTLKLIE--------THLRTIPSHAFSNL-PNI--SRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp TTCCEEEEES--------CCCSEECTTTTTTC-TTC--CEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CcccEEEEeC--------CcceEECHHHccCC-CCC--cEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 4688899999 88885555578888 999 999999997 8774 44578899999999997 3 55665
Q ss_pred CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC-cCCCCCCCCCCCccccceeeeCCcchhccC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN-QANDIPCSSNNNVQTVEFEGEMEHSLSEVY 225 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N-~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~ 225 (353)
..+.++++|++|++++|.+++ +|.. +....+.. ++++++++| +++ +..+..|..++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~~-----~~l~~L~~-L~~L~l~~N~~l~----------------~i~~~~~~~l~ 155 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPDL-----TKVYSTDI-FFILEITDNPYMT----------------SIPVNAFQGLC 155 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCCC-----TTCCBCCS-EEEEEEESCTTCC----------------EECTTTTTTTB
T ss_pred HHhCCCCCCCEEeCCCCCCcc-cccc-----cccccccc-ccEEECCCCcchh----------------hcCcccccchh
Confidence 457889999999999999885 6642 22222222 348888888 443 33345688899
Q ss_pred CCC-EEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCC----CCc-hhhcCC-CCCCEEEccCCCCCCCCc
Q 038586 226 DIF-DVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ----NDP-IELLCL-DNILEIVESEVEIDSLPD 298 (353)
Q Consensus 226 ~L~-~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~----~iP-~~l~~l-~~L~~L~Ls~N~l~~iP~ 298 (353)
+|+ +|++++|+++. +| .... ..++|+.|++++. .+| ..+..+ ++|++|++++|++..+|+
T Consensus 156 ~L~~~L~l~~n~l~~-i~----~~~~--------~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 156 NETLTLKLYNNGFTS-VQ----GYAF--------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp SSEEEEECCSCCCCE-EC----TTTT--------TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred cceeEEEcCCCCCcc-cC----Hhhc--------CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 999 99999999984 55 3322 2378999999883 344 457788 999999999999988888
Q ss_pred ccccccCcccchhc
Q 038586 299 RLVFDVREFLSELD 312 (353)
Q Consensus 299 ~~~~~~l~~L~~Ld 312 (353)
. .++.|+.|+
T Consensus 223 --~--~~~~L~~L~ 232 (239)
T 2xwt_C 223 --K--GLEHLKELI 232 (239)
T ss_dssp --T--TCTTCSEEE
T ss_pred --h--HhccCceee
Confidence 2 344444444
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=4.4e-18 Score=169.77 Aligned_cols=199 Identities=9% Similarity=0.083 Sum_probs=146.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHH-HhhccccccEEEeecCCCCCCCCC---cccCCCCCCcEEeccC--CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALL-LCLNCMIYDIWTLVTINFGGIPVP---EFVGSLSKLSLNTVDH--QGEI 145 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~-~L~~~L~~~~L~Ls~N~l~~~~~P---~~~~~L~~L~~L~Ls~--~~~l 145 (353)
++++.+++++ |.+. .+|..++ .+ ++| ++|++++|.+++. +| ..++.+++|++|++++ ...+
T Consensus 310 ~~L~~L~l~~--------n~l~-~ip~~~~~~l-~~L--~~L~Ls~N~l~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 310 EKVKRITVEN--------SKVF-LVPCSFSQHL-KSL--EFLDLSENLMVEE-YLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp TTCCEEEEES--------SCCC-CCCHHHHHHC-TTC--CEEECCSSCCCHH-HHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred ccceEEEecc--------Cccc-cCCHHHHhcC-ccc--cEEEccCCccccc-cccchhhhhccccCcEEEccCCccccc
Confidence 3566777777 6665 6777664 57 788 8888888887775 53 2367778888888877 4444
Q ss_pred C---CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchh
Q 038586 146 I---HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLS 222 (353)
Q Consensus 146 P---~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~ 222 (353)
| ..++.+++|++|++++|+++ .+|.. +..+.. ++++++++|+++.++ ..+
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-------~~~~~~-L~~L~Ls~N~l~~l~-----------------~~~- 429 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDS-------CQWPEK-MRFLNLSSTGIRVVK-----------------TCI- 429 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCC-CCCSC-------CCCCTT-CCEEECTTSCCSCCC-----------------TTS-
T ss_pred ccchhhhhcCCCCCEEECCCCCCc-cCChh-------hccccc-ccEEECCCCCccccc-----------------chh-
Confidence 4 24677788888888888777 56655 555556 788888888444333 221
Q ss_pred ccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-CCCCc
Q 038586 223 EVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-DSLPD 298 (353)
Q Consensus 223 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~ 298 (353)
.++|++|++++|++++.++ .+++|++|++++ ..+|. ...+++|++|++++|++ +..|.
T Consensus 430 -~~~L~~L~Ls~N~l~~~~~----------------~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 430 -PQTLEVLDVSNNNLDSFSL----------------FLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp -CTTCSEEECCSSCCSCCCC----------------CCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred -cCCceEEECCCCChhhhcc----------------cCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHH
Confidence 1479999999999987443 788999999999 67776 46789999999999999 55555
Q ss_pred ccccccCcccchhccccCCCccccccccccc-c
Q 038586 299 RLVFDVREFLSELDQIAEPRDEECGKLQAVA-W 330 (353)
Q Consensus 299 ~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~-~ 330 (353)
.|+.++.|+.|+...++..+.|..+..+. |
T Consensus 492 --~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~ 522 (549)
T 2z81_A 492 --IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522 (549)
T ss_dssp --GGGGCTTCCEEECCSSCBCCCHHHHHHHHHH
T ss_pred --HHhcCcccCEEEecCCCccCCCccHHHHHHH
Confidence 68999999999999999988888665553 5
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=2e-17 Score=150.92 Aligned_cols=178 Identities=13% Similarity=0.052 Sum_probs=148.8
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-C
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-S 148 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~ 148 (353)
.+++.|++++ |.+++..+..+..+ ++| ++|++++|.+++. .|..|.++++|++|++++ ...++. .
T Consensus 52 ~~L~~L~l~~--------n~l~~~~~~~~~~l-~~L--~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 119 (276)
T 2z62_A 52 PELQVLDLSR--------CEIQTIEDGAYQSL-SHL--STLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFP 119 (276)
T ss_dssp TTCSEEECTT--------CCCCEECTTTTTTC-TTC--CEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCC
T ss_pred cCCcEEECCC--------CcCCccCHHHccCC-cCC--CEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchh
Confidence 4799999999 89986666688899 999 9999999999996 667899999999999998 455544 6
Q ss_pred CCCCCCCCEEEccCcccce-ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 149 VPEYPTLFDVEGYMASLVQ-ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g-~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
++++++|++|++++|.+++ .+|.. +..+.. ++++++++| ++++..+..+..+++|
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~-------~~~l~~-L~~L~Ls~N----------------~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEY-------FSNLTN-LEHLDLSSN----------------KIQSIYCTDLRVLHQM 175 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGG-------GGGCTT-CCEEECCSS----------------CCCEECGGGGHHHHTC
T ss_pred cccCCCCCEEECcCCccceecCchh-------hccCCC-CCEEECCCC----------------CCCcCCHHHhhhhhhc
Confidence 8999999999999999986 46777 777777 999999999 7777667778777777
Q ss_pred C----EEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEEEccCCCC-CCCCc
Q 038586 228 F----DVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEIVESEVEI-DSLPD 298 (353)
Q Consensus 228 ~----~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L~Ls~N~l-~~iP~ 298 (353)
+ +|++++|++++..+ ..+. ..+|+.|++++ ..+|.. +..+++|++|++++|++ ...|.
T Consensus 176 ~~l~l~L~ls~n~l~~~~~----~~~~---------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQP----GAFK---------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp TTCCEEEECCSSCCCEECT----TSSC---------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cccceeeecCCCcccccCc----cccC---------CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 7 89999999987666 4444 45899999998 566655 67899999999999999 55553
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=2.8e-17 Score=165.92 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=161.8
Q ss_pred cEEEEEcCCCCCccccccCCc--ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCC-C
Q 038586 73 HFKVLNLRSSNDENARRKILK--GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEI-I 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~--g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~l-P 146 (353)
.++.++++. |.+. +..+..+..+ ..| ++++++.|.+.. ++..+..+++|+.++++. .... +
T Consensus 372 ~L~~L~ls~--------n~l~~~~~~~~~~~~~-~~L--~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 372 SLEFLDLSR--------NGLSFKGCCSQSDFGT-ISL--KYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp TCCEEECCS--------SCCBEEEECCHHHHSC-SCC--CEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred ccccchhhc--------cccccccccccchhhh-hhh--hhhhcccccccc--ccccccccccccchhhhhccccccccc
Confidence 345556655 5553 3455666667 777 788877777766 566677788888888876 2222 3
Q ss_pred CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee-eeCCcchhccC
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-GEMEHSLSEVY 225 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-g~~p~~l~~l~ 225 (353)
..+..+++++.+++++|.+.+..|.. +..... ++.+++++| .+. +..|..+..++
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~-------~~~~~~-L~~L~Ls~N----------------~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSS-LEVLKMAGN----------------SFQENFLPDIFTELR 494 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTT-------TTTCTT-CCEEECTTC----------------EEGGGEECSCCTTCT
T ss_pred cccccccccccccccccccccccccc-------cccchh-hhhhhhhhc----------------ccccccCchhhhhcc
Confidence 44677888888888888888776666 666666 788888888 543 45788899999
Q ss_pred CCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCccc
Q 038586 226 DIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPDRL 300 (353)
Q Consensus 226 ~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~ 300 (353)
+|++|+|++|++++..| ..++ ++++|++|+|++ +..|..+..+++|++|+|++|+| +..|.
T Consensus 495 ~L~~L~Ls~N~L~~l~~----~~f~--------~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-- 560 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSP----TAFN--------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-- 560 (635)
T ss_dssp TCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS--
T ss_pred ccCEEECCCCccCCcCh----HHHc--------CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH--
Confidence 99999999999999989 8888 999999999998 33456789999999999999999 55666
Q ss_pred ccccC-cccchhccccCCCccccccccccccc
Q 038586 301 VFDVR-EFLSELDQIAEPRDEECGKLQAVAWE 331 (353)
Q Consensus 301 ~~~~l-~~L~~Ld~~~~~~~~~c~~l~~~~~~ 331 (353)
.+..+ +.|+.|+...++..++|...+...|-
T Consensus 561 ~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp CTTCCCTTCCEEECTTCCBCCSGGGHHHHHHH
T ss_pred HHHhhhCcCCEEEeeCCCCcccCCcHHHHHHH
Confidence 78777 68999999999999999977777774
No 67
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=1.1e-17 Score=168.21 Aligned_cols=194 Identities=14% Similarity=0.150 Sum_probs=143.1
Q ss_pred cccce-EecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEec
Q 038586 61 KWRGV-CCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTV 139 (353)
Q Consensus 61 ~w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~L 139 (353)
.|.|+ .|.. ++++.|++++ |++++ +|..+ + ++| ++|+|++|.|+. +| ..+++|++|++
T Consensus 49 ~~~~l~~C~~--~~L~~L~Ls~--------n~L~~-lp~~l--~-~~L--~~L~Ls~N~l~~--ip---~~l~~L~~L~L 107 (571)
T 3cvr_A 49 AVSLLKECLI--NQFSELQLNR--------LNLSS-LPDNL--P-PQI--TVLEITQNALIS--LP---ELPASLEYLDA 107 (571)
T ss_dssp HHHHHHHHHH--TTCSEEECCS--------SCCSC-CCSCC--C-TTC--SEEECCSSCCSC--CC---CCCTTCCEEEC
T ss_pred hhhhcccccc--CCccEEEeCC--------CCCCc-cCHhH--c-CCC--CEEECcCCCCcc--cc---cccCCCCEEEc
Confidence 69999 7853 4799999999 89986 88755 4 789 999999999996 78 55899999999
Q ss_pred cC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccc-----c
Q 038586 140 DH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTV-----E 212 (353)
Q Consensus 140 s~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~ 212 (353)
++ ...+|. +++ +|++|++++|++++ +|. .+.. ++.|++++|+++.+|. ....++.+ .
T Consensus 108 s~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~----------~l~~-L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 108 CDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE----------LPAL-LEYINADNNQLTMLPE-LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CSSCCSCCCC-CCT--TCCEEECCSSCCSC-CCC----------CCTT-CCEEECCSSCCSCCCC-CCTTCCEEECCSSC
T ss_pred cCCCCCCcch-hhc--CCCEEECCCCcCCC-CCC----------cCcc-ccEEeCCCCccCcCCC-cCCCcCEEECCCCC
Confidence 99 566888 765 99999999999986 554 1233 5666666666665554 22233222 4
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEcc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVES 289 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls 289 (353)
+++ +|. +. ++|++|+|++|+|+ .+| . +.. .-......|+.|++++ ..+|..+..+++|+.|+|+
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp----~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLE-SLP----A-VPV---RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCS-SCC----C-CC-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECC
T ss_pred CCC-cch-hh--CCCCEEECcCCCCC-chh----h-HHH---hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEee
Confidence 444 666 55 88999999999998 577 4 550 0000122239999998 7899999889999999999
Q ss_pred CCCC-CCCCcccccccCc
Q 038586 290 EVEI-DSLPDRLVFDVRE 306 (353)
Q Consensus 290 ~N~l-~~iP~~~~~~~l~ 306 (353)
+|++ +.+|. .+..++
T Consensus 239 ~N~l~~~~p~--~l~~l~ 254 (571)
T 3cvr_A 239 DNPLSSRIRE--SLSQQT 254 (571)
T ss_dssp SSSCCHHHHH--HHHHHH
T ss_pred CCcCCCcCHH--HHHHhh
Confidence 9999 77887 565544
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=3.6e-17 Score=152.11 Aligned_cols=182 Identities=11% Similarity=0.116 Sum_probs=104.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|++++ +.+. .+| .+..+ ++| ++|++++|.+++ +|. +..+++|++|++++ ...+| .++
T Consensus 42 ~L~~L~l~~--------~~i~-~l~-~~~~l-~~L--~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~-~~~ 104 (308)
T 1h6u_A 42 GITTLSAFG--------TGVT-TIE-GVQYL-NNL--IGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNVS-AIA 104 (308)
T ss_dssp TCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCCG-GGT
T ss_pred CcCEEEeeC--------CCcc-Cch-hhhcc-CCC--CEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCch-hhc
Confidence 577777777 6665 354 46667 777 888888887777 454 77777888888777 44444 577
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-CCCCCcccc-----ceeeeCCcchhcc
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-SSNNNVQTV-----EFEGEMEHSLSEV 224 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-~~~~~l~~~-----~l~g~~p~~l~~l 224 (353)
++++|++|++++|++++ ++. +..+.. ++++++++|+++.++. .....++.+ ++++ ++. +..+
T Consensus 105 ~l~~L~~L~l~~n~l~~-~~~--------l~~l~~-L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l 172 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITD-VTP--------LAGLSN-LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP-LANL 172 (308)
T ss_dssp TCTTCCEEECTTSCCCC-CGG--------GTTCTT-CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG-GTTC
T ss_pred CCCCCCEEECCCCCCCC-chh--------hcCCCC-CCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh-hcCC
Confidence 77778888887777764 221 233344 5556666663333221 011111111 3332 222 5566
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++|++|++++|++++. + . +. .+++|++|++++ ..+| .+..+++|+.|++++|++...|.
T Consensus 173 ~~L~~L~l~~n~l~~~-~----~-l~--------~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 173 SKLTTLKADDNKISDI-S----P-LA--------SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCCEEECCSSCCCCC-G----G-GG--------GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCEEECCCCccCcC-h----h-hc--------CCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 6666666666666542 2 1 34 566666666666 3333 25566666666666666644444
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.1e-16 Score=149.72 Aligned_cols=195 Identities=7% Similarity=-0.003 Sum_probs=124.2
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C---CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q---GEII 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~---~~lP 146 (353)
.+++.|++++ |.++ .+|..+ . ++| ++|++++|.+++. .+..+.++++|++|++++ . +..|
T Consensus 100 ~~L~~L~Ls~--------n~l~-~l~~~~--~-~~L--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 100 VKLERLYLSK--------NQLK-ELPEKM--P-KTL--QELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp TTCCEEECCS--------SCCS-BCCSSC--C-TTC--CEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred CCCCEEECCC--------CcCC-ccChhh--c-ccc--cEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcCh
Confidence 3677888888 5554 444432 1 455 6666666666553 333455566666666655 1 1334
Q ss_pred CCCCCCCCCCEEEccCcccceecCc-----cccccCCC----------cCCCCccccceeccCCcCCCCCCCCCCCcccc
Q 038586 147 HSVPEYPTLFDVEGYMASLVQILEK-----DQHDEGSQ----------NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTV 211 (353)
Q Consensus 147 ~~l~~L~~L~~L~Ls~N~l~g~lp~-----~~~L~l~~----------~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~ 211 (353)
..+.++++|++|++++|.++. +|. +++|++++ +..+.. ++.+++++|
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n---------------- 226 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFN---------------- 226 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSCCCEECTGGGTTCTT-CCEEECCSS----------------
T ss_pred hhccCCCCcCEEECCCCcccc-CCccccccCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCC----------------
Confidence 445555566666666555542 221 22222222 333334 556666666
Q ss_pred ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hc------CCC
Q 038586 212 EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LL------CLD 281 (353)
Q Consensus 212 ~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~------~l~ 281 (353)
.+++..+..+..+++|++|++++|+++ .+| ..+. .+++|+.|++++ ..+|.. +. ...
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp----~~l~--------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVP----GGLA--------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCC----TTTT--------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCC----hhhc--------cCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 777777778999999999999999998 577 6788 899999999998 555543 32 247
Q ss_pred CCCEEEccCCCCC--CCCcccccccCcccchhcc
Q 038586 282 NILEIVESEVEID--SLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 282 ~L~~L~Ls~N~l~--~iP~~~~~~~l~~L~~Ld~ 313 (353)
.++.+++++|.+. .+++. .|..+..++.++.
T Consensus 294 ~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L 326 (330)
T 1xku_A 294 SYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQL 326 (330)
T ss_dssp CCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC
T ss_pred cccceEeecCcccccccCcc-ccccccceeEEEe
Confidence 8999999999993 34431 7888888887764
No 70
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=164.68 Aligned_cols=178 Identities=11% Similarity=-0.003 Sum_probs=152.8
Q ss_pred CcEEEEEcCCCCCccccccCCcccc--cHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTI--SSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEII 146 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~l--p~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP 146 (353)
.+++.|++++ |.+++.. |..+..+ ++| ++|++++|.+.+ +|..+..+++|++|++++ .+..|
T Consensus 347 ~~L~~L~l~~--------n~l~~~~~~~~~~~~~-~~L--~~L~l~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 347 PSLEFLDLSR--------NGLSFKGCCSQSDFGT-TSL--KYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp TTCCEEECCS--------SCCBEEEEEEHHHHTC-SCC--CEEECCSCSEEE--EEEEEETCTTCCEEECTTSEEESCTT
T ss_pred CCCCEEeCcC--------CccCcccccccccccc-Ccc--CEEECCCCcccc--ccccccccCCCCEEEccCCccccccc
Confidence 3677788888 7877543 7888899 999 999999999988 566699999999999998 33334
Q ss_pred -CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccccee-eeCCcchhcc
Q 038586 147 -HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-GEMEHSLSEV 224 (353)
Q Consensus 147 -~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-g~~p~~l~~l 224 (353)
..+.++++|++|++++|.+.+..|.. +..+.. ++++++++| .++ +.+|..+..+
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~-L~~L~l~~n----------------~l~~~~~p~~~~~l 469 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGI-------FNGLSS-LEVLKMAGN----------------SFQENFLPDIFTEL 469 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTT-------TTTCTT-CCEEECTTC----------------EEGGGEECSCCTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhh-------hhcCCc-CcEEECcCC----------------cCccccchhhhhcc
Confidence 46889999999999999999888877 777777 999999999 776 6789999999
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCCCCCCEEEccCCCC-CCCCc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCLDNILEIVESEVEI-DSLPD 298 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~ 298 (353)
++|++|++++|++++..| ..++ .+++|+.|++++ +..|..+..+++|++|++++|++ +..|.
T Consensus 470 ~~L~~L~l~~n~l~~~~~----~~~~--------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSP----TAFN--------SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECTTSCCCEECT----TTTT--------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEECCCCccccCCh----hhhh--------cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999888 8888 999999999998 33445688999999999999999 77776
No 71
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=4.3e-17 Score=145.15 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=117.8
Q ss_pred CCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC
Q 038586 50 WGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG 129 (353)
Q Consensus 50 W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~ 129 (353)
|.+.. .|.|.+|.|+. +.+. .+|..+ . ++| ++|+|++|.+++. .|..|.
T Consensus 13 ~~~~~----~Cs~~~v~c~~--------------------~~l~-~ip~~~--~-~~L--~~L~Ls~n~i~~~-~~~~~~ 61 (229)
T 3e6j_A 13 CPSQC----SCSGTTVDCRS--------------------KRHA-SVPAGI--P-TNA--QILYLHDNQITKL-EPGVFD 61 (229)
T ss_dssp CCTTC----EEETTEEECTT--------------------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTT
T ss_pred CCCCC----EEeCCEeEccC--------------------CCcC-ccCCCC--C-CCC--CEEEcCCCccCcc-CHHHhh
Confidence 45666 89999999964 3443 566532 2 678 9999999999997 788899
Q ss_pred CCCCCcEEeccC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC
Q 038586 130 SLSKLSLNTVDH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN 206 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~ 206 (353)
.+++|++|+|++ .+.+|.. +..+++|++|+|++|++++..+.. +..+.. +++|++++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-------~~~l~~-L~~L~Ls~N----------- 122 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV-------FDRLVH-LKELFMCCN----------- 122 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS-----------
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH-------hCcchh-hCeEeccCC-----------
Confidence 999999999998 7777754 688999999999999988555554 555666 788888888
Q ss_pred CccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEE
Q 038586 207 NVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEI 286 (353)
Q Consensus 207 ~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L 286 (353)
+++ .+|..+..+++|++|++++|++++..+ . .+..+++|+.|
T Consensus 123 -----~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~----~----------------------------~~~~l~~L~~L 164 (229)
T 3e6j_A 123 -----KLT-ELPRGIERLTHLTHLALDQNQLKSIPH----G----------------------------AFDRLSSLTHA 164 (229)
T ss_dssp -----CCC-SCCTTGGGCTTCSEEECCSSCCCCCCT----T----------------------------TTTTCTTCCEE
T ss_pred -----ccc-ccCcccccCCCCCEEECCCCcCCccCH----H----------------------------HHhCCCCCCEE
Confidence 555 566777788888888888888775443 2 24456678888
Q ss_pred EccCCCC
Q 038586 287 VESEVEI 293 (353)
Q Consensus 287 ~Ls~N~l 293 (353)
++++|.+
T Consensus 165 ~l~~N~~ 171 (229)
T 3e6j_A 165 YLFGNPW 171 (229)
T ss_dssp ECTTSCB
T ss_pred EeeCCCc
Confidence 8888887
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.6e-16 Score=155.86 Aligned_cols=79 Identities=13% Similarity=0.106 Sum_probs=59.6
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++ +|+ +..+ ++| ++|++++|.+++ +|+ ++++++|++|++++ ...+|+ +
T Consensus 68 ~~L~~L~Ls~--------n~l~~-~~~-~~~l-~~L--~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-~ 130 (466)
T 1o6v_A 68 NNLTQINFSN--------NQLTD-ITP-LKNL-TKL--VDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITDIDP-L 130 (466)
T ss_dssp TTCCEEECCS--------SCCCC-CGG-GTTC-TTC--CEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred cCCCEEECCC--------CccCC-chh-hhcc-ccC--CEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCCChH-H
Confidence 4788899988 77774 444 7777 888 888888888887 444 78888888888887 555554 7
Q ss_pred CCCCCCCEEEccCcccce
Q 038586 150 PEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g 167 (353)
+++++|++|++++|.+.+
T Consensus 131 ~~l~~L~~L~l~~n~l~~ 148 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISD 148 (466)
T ss_dssp TTCTTCSEEEEEEEEECC
T ss_pred cCCCCCCEEECCCCccCC
Confidence 778888888888877653
No 73
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.71 E-value=2.5e-16 Score=148.09 Aligned_cols=209 Identities=10% Similarity=0.035 Sum_probs=145.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.++ .+++ +..+ ++| ++|++++|.++. +| .+..+++|++|++++ ...+|. +
T Consensus 66 ~~L~~L~l~~--------n~i~-~~~~-~~~l-~~L--~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~-~ 128 (347)
T 4fmz_A 66 TNLEYLNLNG--------NQIT-DISP-LSNL-VKL--TNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP-L 128 (347)
T ss_dssp TTCCEEECCS--------SCCC-CCGG-GTTC-TTC--CEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG-G
T ss_pred CCccEEEccC--------Cccc-cchh-hhcC-CcC--CEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh-h
Confidence 4678888888 7776 4554 7777 888 888888888876 44 578888888888887 555655 7
Q ss_pred CCCCCCCEEEccCcccce------ecCccccccCCCcCC--------CCccccceeccCCcCCCCCC-CCCCCcccccee
Q 038586 150 PEYPTLFDVEGYMASLVQ------ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQANDIPC-SSNNNVQTVEFE 214 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g------~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~l~~i~~-~~~~~l~~~~l~ 214 (353)
..+++|++|++++|.... .++.+++|+++++.. +.. ++.+++++|++.+++. .....++.+.+.
T Consensus 129 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 129 ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD-LYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp TTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTT-CSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred ccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCC-CCEEEccCCcccccccccCCCccceeecc
Confidence 788888888888885433 344566677666532 233 6778888887776653 223333333332
Q ss_pred ee----CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEE
Q 038586 215 GE----MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIV 287 (353)
Q Consensus 215 g~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~ 287 (353)
+. ++. +..+++|++|++++|++++ ++ . +. .+++|+.|++++ ..+ +.+..+++|++|+
T Consensus 208 ~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~----~-~~--------~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 208 VNQITDITP-VANMTRLNSLKIGNNKITD-LS----P-LA--------NLSQLTWLEIGTNQISDI-NAVKDLTKLKMLN 271 (347)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCC-CG----G-GT--------TCTTCCEEECCSSCCCCC-GGGTTCTTCCEEE
T ss_pred cCCCCCCch-hhcCCcCCEEEccCCccCC-Cc----c-hh--------cCCCCCEEECCCCccCCC-hhHhcCCCcCEEE
Confidence 21 122 6778888888888888865 33 2 55 788889998888 444 4577888999999
Q ss_pred ccCCCCCCCCcccccccCcccchhccccCC
Q 038586 288 ESEVEIDSLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 288 Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
+++|++..+|. +..++.|+.|+...+.
T Consensus 272 l~~n~l~~~~~---~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 272 VGSNQISDISV---LNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCSSCCCCCGG---GGGCTTCSEEECCSSC
T ss_pred ccCCccCCChh---hcCCCCCCEEECcCCc
Confidence 99998866644 7778888888765543
No 74
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=160.77 Aligned_cols=193 Identities=11% Similarity=0.020 Sum_probs=153.0
Q ss_pred ceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--
Q 038586 64 GVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-- 141 (353)
Q Consensus 64 gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-- 141 (353)
...|... .+ .+.++ ++++ .+|..+ . ++| ++|++++|.+++. .+..+.++++|++|++++
T Consensus 27 ~~~C~~~--~~--c~~~~--------~~l~-~iP~~~--~-~~L--~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 27 SLSCDRN--GI--CKGSS--------GSLN-SIPSGL--T-EAV--KSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp CCEECTT--SE--EECCS--------TTCS-SCCTTC--C-TTC--CEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCC--eE--eeCCC--------CCcc-cccccc--c-ccC--cEEECCCCcCccc-CHHHhccCCCCCEEECCCCc
Confidence 5667532 23 78888 8887 788754 2 688 9999999999985 445899999999999998
Q ss_pred CCCC-CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-C---CCCCccccceee-
Q 038586 142 QGEI-IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-S---SNNNVQTVEFEG- 215 (353)
Q Consensus 142 ~~~l-P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-~---~~~~l~~~~l~g- 215 (353)
...+ |..++++++|++|++++|++++..+.. +..+.. ++++++++|+++.++. . ....++.+.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~-L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW-------FKPLSS-LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHH-------HTTCTT-CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhH-------hCCCcc-CCEEECCCCCCcccCchhhhccCCCCcEEECCCC
Confidence 4444 567999999999999999998544443 455666 8999999999998876 2 345566555543
Q ss_pred -----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhh-cCCCCCCEE
Q 038586 216 -----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIEL-LCLDNILEI 286 (353)
Q Consensus 216 -----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l-~~l~~L~~L 286 (353)
..|..++++++|++|++++|++++..| ..++ .+++|++|++++ +.+|..+ ..+++|++|
T Consensus 160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEP----KSLK--------SIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227 (353)
T ss_dssp SSCCEECTTTTTTCCEEEEEEEEETTCCEECT----TTTT--------TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred ccccccCHHHccCCCCCCEEECCCCCcCccCH----HHHh--------ccccCCeecCCCCccccchhhhhhhcccccEE
Confidence 346778999999999999999999888 8888 899999999998 5566654 458999999
Q ss_pred EccCCCCCC
Q 038586 287 VESEVEIDS 295 (353)
Q Consensus 287 ~Ls~N~l~~ 295 (353)
++++|.+..
T Consensus 228 ~L~~n~l~~ 236 (353)
T 2z80_A 228 ELRDTDLDT 236 (353)
T ss_dssp EEESCBCTT
T ss_pred ECCCCcccc
Confidence 999999944
No 75
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=4.1e-16 Score=152.96 Aligned_cols=192 Identities=9% Similarity=0.005 Sum_probs=132.4
Q ss_pred CcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce--
Q 038586 92 LKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ-- 167 (353)
Q Consensus 92 l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g-- 167 (353)
..+..+.++.++ ++| ++|++++|.+++ +| .++.+++|++|++++ ...+| ++.+++|++|++++|.+++
T Consensus 30 ~~~~~~~~~~~l-~~L--~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 30 MQATDTISEEQL-ATL--TSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp CCTTSEEEHHHH-TTC--CEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred cCcccccChhHc-CCC--CEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence 344555678899 999 999999999998 66 689999999999999 55565 8999999999999999885
Q ss_pred --ecCccccccCCCcCC-------CCccccceeccCCcCCCCCCCCCCCcccccee-----eeCCcchhccCCCCEEEcc
Q 038586 168 --ILEKDQHDEGSQNGQ-------QGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE-----GEMEHSLSEVYDIFDVERY 233 (353)
Q Consensus 168 --~lp~~~~L~l~~~~~-------l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~-----g~~p~~l~~l~~L~~L~Ls 233 (353)
.++.+++|+++++.. +.. ++++++++|+++.++......++.+.+. +.+ .++.+++|++|+++
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~~~~l~~-L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLDVSQNPL-LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCTTCTT-CCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCCCcCCEEECCCCcCCeecCCCCCc-CCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 456778888887743 344 7889999999988876665555555433 233 36677888888888
Q ss_pred cCcCcccCCCCCccccch-----hhh--hcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCC
Q 038586 234 SSSLDQILESERTEDHGD-----AAI--QNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLP 297 (353)
Q Consensus 234 ~N~l~g~~p~~~~~~~~~-----~~~--~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP 297 (353)
+|++++ +|-.....+.. ..+ .....+++|+.|++++ ..+| +..+++|+.|++++|++..+|
T Consensus 179 ~n~l~~-l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-eccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence 888776 33000000000 000 0112556666666666 3455 566677777777777774444
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=2e-16 Score=155.04 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=111.0
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
|.+++ +| ++..+ ++| ++|++++|.+++ +|... ++|++|++++ ...+| .++.+++|++|++++|++++
T Consensus 183 n~l~~-l~-~~~~l-~~L--~~L~l~~N~l~~--l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 183 NQLEE-LP-ELQNL-PFL--TAIYADNNSLKK--LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SCCSS-CC-CCTTC-TTC--CEEECCSSCCSS--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CcCCc-Cc-cccCC-CCC--CEEECCCCcCCc--CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc
Confidence 45543 44 35555 555 666666665555 34322 3566666666 44566 37777777778877777764
Q ss_pred ---ecCccccccCCCcCCCC-----ccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhcc-CCCCEEEcccCcCc
Q 038586 168 ---ILEKDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEV-YDIFDVERYSSSLD 238 (353)
Q Consensus 168 ---~lp~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l-~~L~~L~Ls~N~l~ 238 (353)
..+.+++|+++++...+ ..++.+++++|+++.++... ..++.+.+.+.-...+..+ ++|++|++++|+++
T Consensus 252 l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~-~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 252 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP-PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 330 (454)
T ss_dssp CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCC-TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS
T ss_pred ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcC-CcCCEEECcCCcCCcccCCcCcCCEEECCCCccc
Confidence 22345666666654332 12566677777666543211 2333333332222223333 47888888888887
Q ss_pred ccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-C--CCCcccccccC
Q 038586 239 QILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-D--SLPDRLVFDVR 305 (353)
Q Consensus 239 g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~--~iP~~~~~~~l 305 (353)
+ +| . .+++|+.|++++ ..+|. .+++|++|++++|++ + .+|. .++.+
T Consensus 331 ~-lp----~-----------~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~--~l~~L 382 (454)
T 1jl5_A 331 E-LP----A-----------LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPE--SVEDL 382 (454)
T ss_dssp C-CC----C-----------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCT--TCCEE
T ss_pred c-cc----c-----------cCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChH--HHHhh
Confidence 6 55 2 357899999988 66776 478999999999999 5 6777 67666
No 77
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=2.2e-16 Score=148.44 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=153.6
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++ +| ++..+ ++| ++|++++|.+++ +|. +..+++|++|++++ ....++.+
T Consensus 88 ~~L~~L~L~~--------n~i~~-~~-~~~~l-~~L--~~L~l~~n~i~~--~~~-~~~l~~L~~L~l~~n~~~~~~~~~ 151 (347)
T 4fmz_A 88 VKLTNLYIGT--------NKITD-IS-ALQNL-TNL--RELYLNEDNISD--ISP-LANLTKMYSLNLGANHNLSDLSPL 151 (347)
T ss_dssp TTCCEEECCS--------SCCCC-CG-GGTTC-TTC--SEEECTTSCCCC--CGG-GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred CcCCEEEccC--------CcccC-ch-HHcCC-CcC--CEEECcCCcccC--chh-hccCCceeEEECCCCCCcccccch
Confidence 4789999999 88874 54 58888 999 999999999988 555 88999999999998 23334448
Q ss_pred CCCCCCCEEEccCcccce-----ecCccccccCCCcCC--------CCccccceeccCCcCCCCC-CCCCCCccccceee
Q 038586 150 PEYPTLFDVEGYMASLVQ-----ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQANDIP-CSSNNNVQTVEFEG 215 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g-----~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~l~~i~-~~~~~~l~~~~l~g 215 (353)
..+++|++|++++|.+.+ .++.+++|+++++.. +.. ++.+++++|++.+++ ......++.+.+.+
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYFTAYVNQITDITPVANMTRLNSLKIGN 230 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTT-CCEEECCSSCCCCCGGGGGCTTCCEEECCS
T ss_pred hhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCc-cceeecccCCCCCCchhhcCCcCCEEEccC
Confidence 889999999999988764 456778888877643 233 577888888887765 33334444444433
Q ss_pred ----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEc
Q 038586 216 ----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVE 288 (353)
Q Consensus 216 ----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~L 288 (353)
.++. +..+++|++|++++|++++ ++ .+. .+++|+.|++++ ..+ +.+..+++|++|++
T Consensus 231 n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~-----~~~--------~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 231 NKITDLSP-LANLSQLTWLEIGTNQISD-IN-----AVK--------DLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFL 294 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-----GGT--------TCTTCCEEECCSSCCCCC-GGGGGCTTCSEEEC
T ss_pred CccCCCcc-hhcCCCCCEEECCCCccCC-Ch-----hHh--------cCCCcCEEEccCCccCCC-hhhcCCCCCCEEEC
Confidence 2333 7788889999999888875 23 455 788888888888 444 35777888888888
Q ss_pred cCCCC-CCCCcccccccCcccchhccccCC
Q 038586 289 SEVEI-DSLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 289 s~N~l-~~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
++|++ +..|. .++.++.|+.|+...+.
T Consensus 295 ~~n~l~~~~~~--~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 295 NNNQLGNEDME--VIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CSSCCCGGGHH--HHHTCTTCSEEECCSSS
T ss_pred cCCcCCCcChh--HhhccccCCEEEccCCc
Confidence 88888 44555 67778888888765543
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=3.4e-17 Score=165.29 Aligned_cols=173 Identities=13% Similarity=0.032 Sum_probs=109.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l 149 (353)
.++.|||++ |.+++..+.+|.++ ++| ++|||++|.|++. .|..|.++++|++|+|++ ...+|+ .|
T Consensus 53 ~~~~LdLs~--------N~i~~l~~~~f~~l-~~L--~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 53 STKNLDLSF--------NPLRHLGSYSFFSF-PEL--QVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp TCCEEECTT--------SCCCEECTTTTTTC-TTC--CEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CCCEEEeeC--------CCCCCCCHHHHhCC-CCC--CEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 567777777 77764444567777 777 7777777777774 445577777777777777 555554 36
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee-eCCcchhccCCCC
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG-EMEHSLSEVYDIF 228 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g-~~p~~l~~l~~L~ 228 (353)
.++++|++|++++|++++..+.. ++.+.. +++|++++| .+++ .+|..++.+++|+
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~-------~~~L~~-L~~L~Ls~N----------------~l~~~~~~~~~~~l~~L~ 176 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFP-------IGHLKT-LKELNVAHN----------------LIQSFKLPEYFSNLTNLE 176 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCC-------CTTCTT-CCEEECCSS----------------CCCCCCCCGGGGGCTTCC
T ss_pred cCCCCCCEEECCCCcCCCCChhh-------hhcCcc-cCeeccccC----------------ccccCCCchhhccchhhh
Confidence 77777777777777776544444 555666 777777777 4433 3566677777777
Q ss_pred EEEcccCcCcccCCCCCccccchhhhhcccCCCcc----ceeecCC---CCCchhhcCCCCCCEEEccCCCC
Q 038586 229 DVERYSSSLDQILESERTEDHGDAAIQNKQQEAVE----EEALLAQ---QNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 229 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L----~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
+|++++|++++..| ..+. .+..+ ..++++. ..++........+..+++++|..
T Consensus 177 ~L~L~~N~l~~~~~----~~l~--------~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 177 HLDLSSNKIQSIYC----TDLR--------VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 236 (635)
T ss_dssp EEECCSSCCCEECG----GGGH--------HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred hhcccCcccccccc----cccc--------chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccc
Confidence 77777777776666 4444 33322 2344444 33344444444556666666655
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=4.6e-16 Score=157.95 Aligned_cols=72 Identities=11% Similarity=0.128 Sum_probs=51.9
Q ss_pred CCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccc
Q 038586 225 YDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLV 301 (353)
Q Consensus 225 ~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~ 301 (353)
++|++|++++|++++ +| . .+++|+.|++++ ..+|. .+++|+.|+|++|+|..+|+ .
T Consensus 221 ~~L~~L~Ls~N~L~~-lp-------~--------~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~--~ 279 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP-------V--------LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPE--S 279 (622)
T ss_dssp TTCCEEECCSSCCSC-CC-------C--------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCG--G
T ss_pred CCCCEEEccCCccCc-CC-------C--------CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCH--H
Confidence 456666666666654 33 1 556788888888 55665 56788889999998888888 7
Q ss_pred cccCcccchhccccCC
Q 038586 302 FDVREFLSELDQIAEP 317 (353)
Q Consensus 302 ~~~l~~L~~Ld~~~~~ 317 (353)
+..+++|+.|+...++
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 8888888888765543
No 80
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=1e-16 Score=151.68 Aligned_cols=203 Identities=13% Similarity=0.069 Sum_probs=125.6
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCc-cc
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPE-FV 128 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~ 128 (353)
|.|..|.|+.. ..+++.|+|++ |+++ .+|+ +|.++ ++| ++|+|++|.+.+. +|. .|
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~--------N~i~-~i~~~~f~~l-~~L--~~L~Ls~N~i~~~-i~~~~f 75 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVL--------TKLR-VIQKGAFSGF-GDL--EKIEISQNDVLEV-IEADVF 75 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEES--------CCCS-EECTTSSTTC-TTC--CEEEEECCTTCCE-ECTTSB
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccC--------CcCC-CcCHHHHcCC-CCC--CEEECcCCCCCCc-cChhHh
Confidence 67888888631 13566677777 6666 4553 46666 777 7777777776554 443 45
Q ss_pred CCCCCCcEEec-cC--CCCC-CCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccC-CcCCCCCCC
Q 038586 129 GSLSKLSLNTV-DH--QGEI-IHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQH-NQANDIPCS 203 (353)
Q Consensus 129 ~~L~~L~~L~L-s~--~~~l-P~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~-N~l~~i~~~ 203 (353)
.++++++++.. +. ...+ |..+..+++|++|++++|++.+..+.. +..... +..+++.+ |
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~-------~~~~~~-l~~l~l~~~~-------- 139 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-------KIHSLQ-KVLLDIQDNI-------- 139 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT-------TCCBSS-CEEEEEESCT--------
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh-------hcccch-hhhhhhcccc--------
Confidence 66666655333 32 4444 344566777777777777766332222 111122 33444433 3
Q ss_pred CCCCccccceeeeCCcchhccC-CCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchh-h
Q 038586 204 SNNNVQTVEFEGEMEHSLSEVY-DIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIE-L 277 (353)
Q Consensus 204 ~~~~l~~~~l~g~~p~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~-l 277 (353)
++....+..|..+. .++.|++++|+|+...+ ... ...+|+++++.+ +.+|.. +
T Consensus 140 --------~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~-----~~f--------~~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 140 --------NIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAF--------NGTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp --------TCCEECTTSSTTSBSSCEEEECCSSCCCEECT-----TSS--------TTEEEEEEECTTCTTCCCCCTTTT
T ss_pred --------ccccccccchhhcchhhhhhccccccccCCCh-----hhc--------cccchhHHhhccCCcccCCCHHHh
Confidence 33333344555553 58889999999876443 333 456788888875 777764 6
Q ss_pred cCCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 278 LCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 278 ~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
..+++|++|++++|+|..+|+. .|..++.|+.++.
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp~~-~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLPSY-GLENLKKLRARST 233 (350)
T ss_dssp TTEECCSEEECTTSCCCCCCSS-SCTTCCEEECTTC
T ss_pred ccCcccchhhcCCCCcCccChh-hhccchHhhhccC
Confidence 7889999999999999888873 4677776666553
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.5e-16 Score=138.19 Aligned_cols=150 Identities=7% Similarity=-0.006 Sum_probs=117.7
Q ss_pred HHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
..+ ++| ++|++++|.++. +| .+..+++|++|++++ ....++.+..+++|++|++++|.+++..|..
T Consensus 41 ~~l-~~L--~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------- 107 (197)
T 4ezg_A 41 AQM-NSL--TYITLANINVTD--LT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN------- 107 (197)
T ss_dssp HHH-HTC--CEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-------
T ss_pred hhc-CCc--cEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-------
Confidence 566 888 999999999886 67 688889999999988 4444457888999999999999988766666
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccC
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQ 259 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 259 (353)
+..+.. ++++++++| .+++..|..++.+++|++|++++|++.+.+| .++ .
T Consensus 108 l~~l~~-L~~L~Ls~n----------------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~--------~ 157 (197)
T 4ezg_A 108 LSGLTS-LTLLDISHS----------------AHDDSILTKINTLPKVNSIDLSYNGAITDIM-----PLK--------T 157 (197)
T ss_dssp CTTCTT-CCEEECCSS----------------BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----GGG--------G
T ss_pred hcCCCC-CCEEEecCC----------------ccCcHhHHHHhhCCCCCEEEccCCCCccccH-----hhc--------C
Confidence 666777 888999999 7777778888899999999999998333344 356 7
Q ss_pred CCccceeecCC---CCCchhhcCCCCCCEEEccCCCCC
Q 038586 260 EAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 260 l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
+++|+.|++++ ..++ .+..+++|++|++++|+++
T Consensus 158 l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 158 LPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 88889998888 4455 6788899999999999884
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1.5e-17 Score=163.01 Aligned_cols=204 Identities=11% Similarity=0.076 Sum_probs=119.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCC-------------cEEe
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKL-------------SLNT 138 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L-------------~~L~ 138 (353)
.+++++++++ |.+ |.+|++++++ ++| ++|++++|.+.|. +|..++++++| ++|+
T Consensus 11 ~~L~~L~l~~--------n~l-~~iP~~i~~L-~~L--~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~ 77 (454)
T 1jl5_A 11 TFLQEPLRHS--------SNL-TEMPVEAENV-KSK--TEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELE 77 (454)
T ss_dssp ---------------------------------CCH--HHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEE
T ss_pred ccchhhhccc--------Cch-hhCChhHhcc-cch--hhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEE
Confidence 4789999999 899 8999999999 999 9999999999988 99999998875 9999
Q ss_pred ccC--CCCCCCCCCCCCCCCEEEccCcccceecC----ccccccCCCcCCCC-----ccccceeccCCcCCCCCC-CCCC
Q 038586 139 VDH--QGEIIHSVPEYPTLFDVEGYMASLVQILE----KDQHDEGSQNGQQG-----AEAEAVCIQHNQANDIPC-SSNN 206 (353)
Q Consensus 139 Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp----~~~~L~l~~~~~l~-----~~l~~l~l~~N~l~~i~~-~~~~ 206 (353)
+++ ...+|.. .++|++|++++|.+++ +| .+++|+++++...+ ..++++++++|+++.+|. ....
T Consensus 78 l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~ 153 (454)
T 1jl5_A 78 LNNLGLSSLPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSS 153 (454)
T ss_dssp CTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCT
T ss_pred ecCCccccCCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCC
Confidence 999 5566663 3789999999999986 54 45666666654332 126677777776555542 1112
Q ss_pred Cccccceee----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcC
Q 038586 207 NVQTVEFEG----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLC 279 (353)
Q Consensus 207 ~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~ 279 (353)
.++.+.+.+ .+|.. ..+|++|++++|++++ +| .++ ++++|+.|++++ ..+|..
T Consensus 154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-----~~~--------~l~~L~~L~l~~N~l~~l~~~--- 213 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-----ELQ--------NLPFLTAIYADNNSLKKLPDL--- 213 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-----CCT--------TCTTCCEEECCSSCCSSCCCC---
T ss_pred CCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-----ccc--------CCCCCCEEECCCCcCCcCCCC---
Confidence 222222221 12322 1355666666665554 33 245 677788888877 334432
Q ss_pred CCCCCEEEccCCCCCCCCcccccccCcccchhcccc
Q 038586 280 LDNILEIVESEVEIDSLPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 280 l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~ 315 (353)
.++|++|++++|.+..+|+ ++.++.|+.|+...
T Consensus 214 ~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 214 PLSLESIVAGNNILEELPE---LQNLPFLTTIYADN 246 (454)
T ss_dssp CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCS
T ss_pred cCcccEEECcCCcCCcccc---cCCCCCCCEEECCC
Confidence 2478888888888877775 67777788777543
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.68 E-value=5e-16 Score=152.33 Aligned_cols=149 Identities=12% Similarity=0.129 Sum_probs=82.9
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC--
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-- 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-- 147 (353)
.+++.|++++ |.+++. ++ +.++ ++| ++|++++|.+++ +|. +.++++|++|++++ ...+|.
T Consensus 90 ~~L~~L~l~~--------n~l~~~-~~-~~~l-~~L--~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 153 (466)
T 1o6v_A 90 TKLVDILMNN--------NQIADI-TP-LANL-TNL--TGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDISALS 153 (466)
T ss_dssp TTCCEEECCS--------SCCCCC-GG-GTTC-TTC--CEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCCGGGT
T ss_pred ccCCEEECCC--------CccccC-hh-hcCC-CCC--CEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCChhhc
Confidence 4678888888 676643 33 6677 777 777777777776 343 66677777777766 222221
Q ss_pred ------------------CCCCCCCCCEEEccCcccce-----ecCccccccCCCcCC--------CCccccceeccCCc
Q 038586 148 ------------------SVPEYPTLFDVEGYMASLVQ-----ILEKDQHDEGSQNGQ--------QGAEAEAVCIQHNQ 196 (353)
Q Consensus 148 ------------------~l~~L~~L~~L~Ls~N~l~g-----~lp~~~~L~l~~~~~--------l~~~l~~l~l~~N~ 196 (353)
.++++++|++|++++|.+.+ .++.+++|+++++.. +.. ++.+++++|+
T Consensus 154 ~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~-L~~L~l~~n~ 232 (466)
T 1o6v_A 154 GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTN-LDELSLNGNQ 232 (466)
T ss_dssp TCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTT-CCEEECCSSC
T ss_pred cCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCC-CCEEECCCCC
Confidence 25566777777777776553 344556666655432 222 4566666666
Q ss_pred CCCCCC-CCCCCccccc-----eeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 197 ANDIPC-SSNNNVQTVE-----FEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 197 l~~i~~-~~~~~l~~~~-----l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
+++++. .....++.+. +++..| +..+++|++|++++|++++
T Consensus 233 l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 233 LKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp CCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred cccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence 655432 1112222222 222111 4555555555555555543
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.66 E-value=7.1e-16 Score=146.51 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=126.1
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC--CCCCC-CCCCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH--QGEII-HSVPE 151 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~--~~~lP-~~l~~ 151 (353)
.+++++ ++++ .+|..+ . ..+ ++|+|++|++++. .+..+. ++++|++|+|++ ...+| ..|.+
T Consensus 22 ~l~c~~--------~~l~-~iP~~~--~-~~l--~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 22 ILSCSK--------QQLP-NVPQSL--P-SYT--ALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp EEECCS--------SCCS-SCCSSC--C-TTC--SEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred EEEeCC--------CCcC-ccCccC--C-CCC--CEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 588998 8887 578644 2 567 9999999999996 555576 899999999998 55555 46888
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEE
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~ 231 (353)
+++|++|+|++|++++..+.. +..+.. ++.|++++| ++++..|..|..+++|++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~-L~~L~L~~N----------------~i~~~~~~~~~~l~~L~~L~ 142 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFL-------FSDLQA-LEVLLLYNN----------------HIVVVDRNAFEDMAQLQKLY 142 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTT-------TTTCTT-CCEEECCSS----------------CCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCcCCHHH-------hCCCcC-CCEEECCCC----------------cccEECHHHhCCcccCCEEE
Confidence 999999999999988655555 566666 788888888 66666677788888888888
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcc--cc
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREF--LS 309 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~--L~ 309 (353)
|++|+|++..+ ..+. .+..+++|+.|+|++|+|..+|.. .+..++. ++
T Consensus 143 L~~N~l~~l~~----~~~~-------------------------~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~~~l~ 192 (361)
T 2xot_A 143 LSQNQISRFPV----ELIK-------------------------DGNKLPKLMLLDLSSNKLKKLPLT-DLQKLPAWVKN 192 (361)
T ss_dssp CCSSCCCSCCG----GGTC-----------------------------CTTCCEEECCSSCCCCCCHH-HHHHSCHHHHT
T ss_pred CCCCcCCeeCH----HHhc-------------------------CcccCCcCCEEECCCCCCCccCHH-HhhhccHhhcc
Confidence 88888875332 2221 013456667777777777656531 4555554 35
Q ss_pred hhccccCCCcccccc
Q 038586 310 ELDQIAEPRDEECGK 324 (353)
Q Consensus 310 ~Ld~~~~~~~~~c~~ 324 (353)
.|+...++..++|..
T Consensus 193 ~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 193 GLYLHNNPLECDCKL 207 (361)
T ss_dssp TEECCSSCEECCHHH
T ss_pred eEEecCCCccCCcCc
Confidence 566666666666653
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.7e-16 Score=147.43 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=146.6
Q ss_pred cEEEEEcCCCCCccccccCCccc-ccH--HHHHhhccccccEEEeecCCCCCCCCCccc--CCCCCCcEEeccC---CCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGT-ISS--ALLLCLNCMIYDIWTLVTINFGGIPVPEFV--GSLSKLSLNTVDH---QGE 144 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~-lp~--~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~--~~L~~L~~L~Ls~---~~~ 144 (353)
+++.+.+.+ ..+... +.. .+..+ ++| ++|++++|.+.+. .|..+ ..+++|++|+|++ .+.
T Consensus 65 ~l~~l~l~~--------~~~~~~~~~~~~~~~~~-~~L--~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 65 RVRRLTVGA--------AQVPAQLLVGALRVLAY-SRL--KELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp CCCEEEECS--------CCCBHHHHHHHHHHHHH-SCC--CEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred ceeEEEEeC--------CcCCHHHHHHHHHhccc-Cce--eEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccch
Confidence 467777777 555422 111 23345 679 9999999999998 88887 8999999999999 333
Q ss_pred CC----CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeee--C-
Q 038586 145 II----HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE--M- 217 (353)
Q Consensus 145 lP----~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~--~- 217 (353)
.| ..+..+++|++|++++|.+.+..|.. +..+.. ++++++++| ++.+. +
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-------~~~l~~-L~~L~Ls~N----------------~l~~~~~~~ 188 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ-------VRAFPA-LTSLDLSDN----------------PGLGERGLM 188 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS-------CCCCTT-CCEEECCSC----------------TTCHHHHHH
T ss_pred hhhhHHHHhhhccCCCEEEeeCCCcchhhHHH-------hccCCC-CCEEECCCC----------------CCccchhhh
Confidence 33 34567999999999999998777777 777777 999999999 55432 2
Q ss_pred -CcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCC---CCCCEEEcc
Q 038586 218 -EHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCL---DNILEIVES 289 (353)
Q Consensus 218 -p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l---~~L~~L~Ls 289 (353)
+..++.+++|++|++++|+++. +|......++ .+++|++|++++ +.+|..+..+ ++|++|+++
T Consensus 189 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~--------~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls 259 (310)
T 4glp_A 189 AALCPHKFPAIQNLALRNTGMET-PTGVCAALAA--------AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLS 259 (310)
T ss_dssp TTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH--------HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECC
T ss_pred HHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh--------cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECC
Confidence 2334688999999999999963 2200000234 789999999999 4447777776 699999999
Q ss_pred CCCCCCCCcccccccCcccchhccccC
Q 038586 290 EVEIDSLPDRLVFDVREFLSELDQIAE 316 (353)
Q Consensus 290 ~N~l~~iP~~~~~~~l~~L~~Ld~~~~ 316 (353)
+|++..+|. .+. ++|+.||...+
T Consensus 260 ~N~l~~lp~--~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 260 FAGLEQVPK--GLP--AKLRVLDLSSN 282 (310)
T ss_dssp SSCCCSCCS--CCC--SCCSCEECCSC
T ss_pred CCCCCchhh--hhc--CCCCEEECCCC
Confidence 999999999 554 78888886544
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=8.6e-18 Score=157.30 Aligned_cols=218 Identities=12% Similarity=0.087 Sum_probs=127.7
Q ss_pred CccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHh-hccccccEEEeecCCCCCCCCCcccCCCCCCcEE
Q 038586 59 CCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLC-LNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLN 137 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L-~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L 137 (353)
|..|.++.|+. ..++.+++++ +.+. +..+..+ .+++ ++|++++|.+.+. .| .+..+++|++|
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~--------~~~~---~~~~~~~~~~~l--~~L~l~~n~l~~~-~~-~~~~~~~L~~L 98 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTG--------KNLH---PDVTGRLLSQGV--IAFRCPRSFMDQP-LA-EHFSPFRVQHM 98 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTT--------CBCC---HHHHHHHHHTTC--SEEECTTCEECSC-CC-SCCCCBCCCEE
T ss_pred HHHHHHHhcCc--hhheeecccc--------ccCC---HHHHHhhhhccc--eEEEcCCcccccc-ch-hhccCCCCCEE
Confidence 45699998753 3578999999 7765 3334332 1678 9999999999985 44 46689999999
Q ss_pred eccC---CCC-CCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCC-cCCC--CCC--CCCCCc
Q 038586 138 TVDH---QGE-IIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHN-QAND--IPC--SSNNNV 208 (353)
Q Consensus 138 ~Ls~---~~~-lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N-~l~~--i~~--~~~~~l 208 (353)
++++ .+. +|..+.++++|++|++++|.+++..+.. ++.+.. ++++++++| .+++ ++. .....+
T Consensus 99 ~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-------l~~~~~-L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 99 DLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-------LAKNSN-LVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp ECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-------HTTCTT-CSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred EccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-------HhcCCC-CCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 9998 333 7777888999999999999887655443 334444 566666665 2221 110 001111
Q ss_pred cccc------eeee-CCcchhccC-CCCEEEcccC--cCc-ccCCCCCccccchhhhhcccCCCccceeecCCC-----C
Q 038586 209 QTVE------FEGE-MEHSLSEVY-DIFDVERYSS--SLD-QILESERTEDHGDAAIQNKQQEAVEEEALLAQQ-----N 272 (353)
Q Consensus 209 ~~~~------l~g~-~p~~l~~l~-~L~~L~Ls~N--~l~-g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-----~ 272 (353)
+.+. +++. ++..+..++ +|++|++++| .++ +.+| ..++ .+++|+.|++++. .
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~----~~~~--------~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS----TLVR--------RCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH----HHHH--------HCTTCSEEECTTCTTCCGG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH----HHHh--------hCCCCCEEeCCCCCcCCHH
Confidence 1111 1111 344455566 6666666666 333 2333 3344 5666666666651 2
Q ss_pred CchhhcCCCCCCEEEccCCCCCCCCcc-cccccCcccchhccc
Q 038586 273 DPIELLCLDNILEIVESEVEIDSLPDR-LVFDVREFLSELDQI 314 (353)
Q Consensus 273 iP~~l~~l~~L~~L~Ls~N~l~~iP~~-~~~~~l~~L~~Ld~~ 314 (353)
.+..+..+++|++|++++|. +..|.. ..++.+++|+.|+..
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCY-DIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCT-TCCGGGGGGGGGCTTCCEEECT
T ss_pred HHHHHhCCCCCCEeeCCCCC-CCCHHHHHHHhcCCCCCEEecc
Confidence 24455566666666666664 111110 024555556655543
No 87
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=9.5e-16 Score=155.62 Aligned_cols=226 Identities=14% Similarity=0.129 Sum_probs=132.8
Q ss_pred CCCC-CCCCCCCCccccceEec------CCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCC
Q 038586 48 SSWG-REDDKRNCCKWRGVCCN------NTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFG 120 (353)
Q Consensus 48 ~~W~-~~~~~~~~C~w~gv~c~------~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~ 120 (353)
..|. +.+ ||.|.|..|. -....++.|++++ ++++ .+|..+. ++| ++|++++|.++
T Consensus 13 ~~W~~~~~----~~~~~~r~~~~~~~~~c~~~~l~~L~ls~--------n~L~-~lp~~l~---~~L--~~L~L~~N~l~ 74 (622)
T 3g06_A 13 SAWRRAAP----AEESRGRAAVVQKMRACLNNGNAVLNVGE--------SGLT-TLPDCLP---AHI--TTLVIPDNNLT 74 (622)
T ss_dssp HHHHHTCC----GGGHHHHHHHHHHHHHHHHHCCCEEECCS--------SCCS-CCCSCCC---TTC--SEEEECSCCCS
T ss_pred HHHHhcCC----cchhccccccCcccccccCCCCcEEEecC--------CCcC-ccChhhC---CCC--cEEEecCCCCC
Confidence 3463 455 8888664321 0112477888888 7776 6776442 567 88888888887
Q ss_pred CCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce---ecCccccccCCCcCCCC-----ccccce
Q 038586 121 GIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ---ILEKDQHDEGSQNGQQG-----AEAEAV 190 (353)
Q Consensus 121 ~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g---~lp~~~~L~l~~~~~l~-----~~l~~l 190 (353)
. +|. .+++|++|+|++ ...+|. .+++|++|++++|++++ .++.+++|++++|.... ..+++|
T Consensus 75 ~--lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L 146 (622)
T 3g06_A 75 S--LPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQEL 146 (622)
T ss_dssp C--CCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred C--CCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCCCCCCCEE
Confidence 6 566 467788888877 556666 56777778887777664 23345666666653321 126677
Q ss_pred eccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccch-----hhhhcc-cC
Q 038586 191 CIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGD-----AAIQNK-QQ 259 (353)
Q Consensus 191 ~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~-----~~~~~~-~~ 259 (353)
++++|+++.+|.. ...++.+ .++ .+| ..+++|+.|++++|++++ +|... ..+.. ..+... ..
T Consensus 147 ~Ls~N~l~~l~~~-~~~L~~L~L~~N~l~-~l~---~~~~~L~~L~Ls~N~l~~-l~~~~-~~L~~L~L~~N~l~~l~~~ 219 (622)
T 3g06_A 147 SVSDNQLASLPAL-PSELCKLWAYNNQLT-SLP---MLPSGLQELSVSDNQLAS-LPTLP-SELYKLWAYNNRLTSLPAL 219 (622)
T ss_dssp ECCSSCCSCCCCC-CTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCC-TTCCEEECCSSCCSSCCCC
T ss_pred ECcCCcCCCcCCc-cCCCCEEECCCCCCC-CCc---ccCCCCcEEECCCCCCCC-CCCcc-chhhEEECcCCcccccCCC
Confidence 7777777666532 1222222 222 133 234667777777777765 32000 01110 000000 02
Q ss_pred CCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 260 EAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 260 l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
+++|+.|++++ ..+| ..+++|+.|++++|+|..+|. . +++|+.|+..
T Consensus 220 ~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--~---~~~L~~L~Ls 269 (622)
T 3g06_A 220 PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--L---PSGLLSLSVY 269 (622)
T ss_dssp CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--C---CTTCCEEECC
T ss_pred CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--c---cccCcEEeCC
Confidence 36788888887 4556 456788899999998888887 3 3556666543
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=4.9e-16 Score=143.32 Aligned_cols=166 Identities=10% Similarity=0.061 Sum_probs=136.4
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.|++++ +.+. .++ .+..+ ++| ++|++++|.+++ ++. +..+++|++|++++ ...+|. ++
T Consensus 47 ~L~~L~l~~--------~~i~-~~~-~~~~l-~~L--~~L~L~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-l~ 109 (291)
T 1h6t_A 47 SIDQIIANN--------SDIK-SVQ-GIQYL-PNV--TKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKVKDLSS-LK 109 (291)
T ss_dssp TCCEEECTT--------SCCC-CCT-TGGGC-TTC--CEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCGGG-GT
T ss_pred cccEEEccC--------CCcc-cCh-hHhcC-CCC--CEEEccCCccCC--Ccc-cccCCCCCEEECCCCcCCCChh-hc
Confidence 688999999 7876 454 47888 999 999999999998 455 89999999999999 555554 89
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
.+++|++|++++|++.+ ++. +..+.. ++.+++++| ++++. ..++.+++|++|
T Consensus 110 ~l~~L~~L~L~~n~i~~-~~~--------l~~l~~-L~~L~l~~n----------------~l~~~--~~l~~l~~L~~L 161 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISD-ING--------LVHLPQ-LESLYLGNN----------------KITDI--TVLSRLTKLDTL 161 (291)
T ss_dssp TCTTCCEEECTTSCCCC-CGG--------GGGCTT-CCEEECCSS----------------CCCCC--GGGGGCTTCSEE
T ss_pred cCCCCCEEECCCCcCCC-Chh--------hcCCCC-CCEEEccCC----------------cCCcc--hhhccCCCCCEE
Confidence 99999999999999885 332 455666 899999999 55543 578899999999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++++|++++. + . ++ .+++|+.|++++ ..+| .+..+++|+.|++++|++...|.
T Consensus 162 ~L~~N~l~~~-~----~-l~--------~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 162 SLEDNQISDI-V----P-LA--------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp ECCSSCCCCC-G----G-GT--------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred EccCCccccc-h----h-hc--------CCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccCCcc
Confidence 9999999864 3 2 66 899999999999 5565 48899999999999999955554
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=135.30 Aligned_cols=151 Identities=9% Similarity=0.030 Sum_probs=100.8
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCC-cccCCCCCCcEEeccC--CCCCCC-CCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVP-EFVGSLSKLSLNTVDH--QGEIIH-SVP 150 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P-~~~~~L~~L~~L~Ls~--~~~lP~-~l~ 150 (353)
+.+++++ +.++ .+|..+ . ..+ ++|+|++|.+++. .| ..|..+++|++|+|++ ...+++ .++
T Consensus 14 ~~l~~s~--------n~l~-~iP~~~--~-~~~--~~L~L~~N~l~~~-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~ 78 (220)
T 2v70_A 14 TTVDCSN--------QKLN-KIPEHI--P-QYT--AELRLNNNEFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFE 78 (220)
T ss_dssp TEEECCS--------SCCS-SCCSCC--C-TTC--SEEECCSSCCCEE-CCCCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEeEeCC--------CCcc-cCccCC--C-CCC--CEEEcCCCcCCcc-CchhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence 3788998 8886 577654 2 567 8999999999885 34 3477788888888877 444443 677
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
++++|++|++++|++++..|.. +..+.. +++|++++| ++++..|..|..+++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~-L~~L~Ls~N----------------~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 79 GASGVNEILLTSNRLENVQHKM-------FKGLES-LKTLMLRSN----------------RITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCGGG-------GTTCSS-CCEEECTTS----------------CCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCCEEECCCCccCccCHhH-------hcCCcC-CCEEECCCC----------------cCCeECHhHcCCCccCCEE
Confidence 7777777777777776554444 444555 666666666 5555555556666666666
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCCchhhcCCCCCCEEEccCCCC-CCC
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIELLCLDNILEIVESEVEI-DSL 296 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l-~~i 296 (353)
+|++|++++..| ..+..+++|++|++++|.+ ...
T Consensus 135 ~L~~N~l~~~~~--------------------------------~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 135 SLYDNQITTVAP--------------------------------GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ECTTSCCCCBCT--------------------------------TTTTTCTTCCEEECCSCCEECSG
T ss_pred ECCCCcCCEECH--------------------------------HHhcCCCCCCEEEecCcCCcCCC
Confidence 666666655444 3455567788888888888 443
No 90
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=8.4e-18 Score=173.94 Aligned_cols=195 Identities=11% Similarity=-0.009 Sum_probs=73.3
Q ss_pred ccccCcHHHHHHHHHHHhCCCCC-CCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHH
Q 038586 21 IIIRCIDEEKEALLTFEQSPVDE-YGALSSWGREDDKRNCCKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSA 99 (353)
Q Consensus 21 ~~~~~~~~e~~aLl~~k~~~~~~-~~~~~~W~~~~~~~~~C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~ 99 (353)
.+.+..+.++++|+++......+ +.....|.... ...+.|.++.++. ++++.++|.+ +.+.+ ++..
T Consensus 125 ~s~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~--~~~~~l~L~~--------n~~~~-~~~~ 191 (727)
T 4b8c_D 125 ASKSLVDCTKQALMEMADTLTDSKTAKKQQPTGDS--TPSGTATNSAVST--PLTPKIELFA--------NGKDE-ANQA 191 (727)
T ss_dssp -------CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------
T ss_pred hhhhccccchhhhhhhhhhcccccCcccCCCcCCC--CccccCCCceecC--CccceEEeeC--------CCCCc-chhh
Confidence 34446677889999998776422 22234563322 1257798888754 5788888877 55543 2322
Q ss_pred HHHhhccc---cccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCcccc
Q 038586 100 LLLCLNCM---IYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQH 174 (353)
Q Consensus 100 l~~L~~~L---~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~ 174 (353)
+... ..| .+..++++.|.+.. .|..+..+++|+.|+|++ ...+|..++++++|++|+|++|.++ .+|..
T Consensus 192 ~l~~-l~Ls~~~i~~~~~~~n~~~~--~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 265 (727)
T 4b8c_D 192 LLQH-KKLSQYSIDEDDDIENRMVM--PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAE-- 265 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGG--
T ss_pred Hhhc-CccCcccccCccccccceec--ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChh--
Confidence 2111 111 00122222233331 345556666666666666 4456655556666666666666665 55555
Q ss_pred ccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhh
Q 038586 175 DEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAI 254 (353)
Q Consensus 175 L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~ 254 (353)
++.+.. |++|+|++| .++ .+|.+|+++++|++|+|++|.|+ .+| ..++
T Consensus 266 -----~~~l~~-L~~L~Ls~N----------------~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp----~~~~---- 313 (727)
T 4b8c_D 266 -----IKNLSN-LRVLDLSHN----------------RLT-SLPAELGSCFQLKYFYFFDNMVT-TLP----WEFG---- 313 (727)
T ss_dssp -----GGGGTT-CCEEECTTS----------------CCS-SCCSSGGGGTTCSEEECCSSCCC-CCC----SSTT----
T ss_pred -----hhCCCC-CCEEeCcCC----------------cCC-ccChhhcCCCCCCEEECCCCCCC-ccC----hhhh----
Confidence 455555 666666666 444 45555666666666666666664 345 4455
Q ss_pred hcccCCCccceeecCC
Q 038586 255 QNKQQEAVEEEALLAQ 270 (353)
Q Consensus 255 ~~~~~l~~L~~L~L~~ 270 (353)
.+++|+.|+|++
T Consensus 314 ----~l~~L~~L~L~~ 325 (727)
T 4b8c_D 314 ----NLCNLQFLGVEG 325 (727)
T ss_dssp ----SCTTCCCEECTT
T ss_pred ----cCCCccEEeCCC
Confidence 566666666665
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=7.1e-16 Score=143.35 Aligned_cols=156 Identities=10% Similarity=0.110 Sum_probs=115.7
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ |.+++ +++ +..+ ++| ++|++++|.+++ +| .+..+++|++|++++ ...+|. +
T Consensus 63 ~~L~~L~L~~--------n~i~~-~~~-~~~l-~~L--~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-l 125 (308)
T 1h6u_A 63 NNLIGLELKD--------NQITD-LAP-LKNL-TKI--TELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-L 125 (308)
T ss_dssp TTCCEEECCS--------SCCCC-CGG-GTTC-CSC--CEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-G
T ss_pred CCCCEEEccC--------CcCCC-Chh-HccC-CCC--CEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-h
Confidence 4799999999 88874 555 8888 999 999999999988 55 688999999999999 556665 8
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCC-CCCCCcccc-----ceeeeCCcchhc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPC-SSNNNVQTV-----EFEGEMEHSLSE 223 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~-~~~~~l~~~-----~l~g~~p~~l~~ 223 (353)
..+++|++|++++|.+++..+ +..+.. ++.+++++|++++++. .....++.+ .+++ ++. +..
T Consensus 126 ~~l~~L~~L~l~~n~l~~~~~---------l~~l~~-L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~ 193 (308)
T 1h6u_A 126 AGLSNLQVLYLDLNQITNISP---------LAGLTN-LQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP-LAS 193 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG---------GGGCTT-CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGG
T ss_pred cCCCCCCEEECCCCccCcCcc---------ccCCCC-ccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-Chh-hcC
Confidence 999999999999999875322 122333 5555555555555432 222233322 4443 232 888
Q ss_pred cCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC
Q 038586 224 VYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ 270 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 270 (353)
+++|++|++++|++++..| +. .+++|+.|++++
T Consensus 194 l~~L~~L~L~~N~l~~~~~------l~--------~l~~L~~L~l~~ 226 (308)
T 1h6u_A 194 LPNLIEVHLKNNQISDVSP------LA--------NTSNLFIVTLTN 226 (308)
T ss_dssp CTTCCEEECTTSCCCBCGG------GT--------TCTTCCEEEEEE
T ss_pred CCCCCEEEccCCccCcccc------cc--------CCCCCCEEEccC
Confidence 9999999999999986433 56 899999999998
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=2.3e-15 Score=133.12 Aligned_cols=144 Identities=7% Similarity=0.012 Sum_probs=114.0
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
+.++++++.++. +|..+. ++|++|++++ ...+|+ .+..+++|++|+|++|++++..|.. +..+..
T Consensus 14 ~~v~c~~~~l~~--iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-------~~~l~~- 81 (220)
T 2v9t_B 14 NIVDCRGKGLTE--IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-------FQGLRS- 81 (220)
T ss_dssp TEEECTTSCCSS--CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-------TTTCSS-
T ss_pred CEEEcCCCCcCc--CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-------hhCCcC-
Confidence 678999999987 787665 6899999998 555654 6888999999999999998777777 777777
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
+++|++++| .+++..+..|..+++|++|+|++|++++..| ..++ .+++|+.|
T Consensus 82 L~~L~Ls~N----------------~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 133 (220)
T 2v9t_B 82 LNSLVLYGN----------------KITELPKSLFEGLFSLQLLLLNANKINCLRV----DAFQ--------DLHNLNLL 133 (220)
T ss_dssp CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEE
T ss_pred CCEEECCCC----------------cCCccCHhHccCCCCCCEEECCCCCCCEeCH----HHcC--------CCCCCCEE
Confidence 888999999 5554334556788889999999999988777 6777 78888888
Q ss_pred ecCC---CCCch-hhcCCCCCCEEEccCCCC
Q 038586 267 LLAQ---QNDPI-ELLCLDNILEIVESEVEI 293 (353)
Q Consensus 267 ~L~~---~~iP~-~l~~l~~L~~L~Ls~N~l 293 (353)
++++ ..+|. .+..+++|++|++++|.+
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8887 44443 477788888888888887
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=2.3e-15 Score=138.83 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=138.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
+.+.+..+ +..+ ++| ++|++++|.++. +|. +..+++|++|++++ ...+++ +.++++|++|++++|.+++
T Consensus 34 ~~~~~~~~--~~~l-~~L--~~L~l~~~~i~~--~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 34 KSVTDAVT--QNEL-NSI--DQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp SCTTSEEC--HHHH-HTC--CEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred CCcccccc--hhhc-Ccc--cEEEccCCCccc--Chh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 45544333 4567 899 999999999987 554 88999999999999 666666 9999999999999999885
Q ss_pred ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCcc
Q 038586 168 ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTE 247 (353)
Q Consensus 168 ~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 247 (353)
+|. +..+.. ++++++++| ++++ + +.+..+++|++|++++|++++. +
T Consensus 105 -~~~--------l~~l~~-L~~L~L~~n----------------~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~----- 150 (291)
T 1h6t_A 105 -LSS--------LKDLKK-LKSLSLEHN----------------GISD-I-NGLVHLPQLESLYLGNNKITDI-T----- 150 (291)
T ss_dssp -GGG--------GTTCTT-CCEEECTTS----------------CCCC-C-GGGGGCTTCCEEECCSSCCCCC-G-----
T ss_pred -Chh--------hccCCC-CCEEECCCC----------------cCCC-C-hhhcCCCCCCEEEccCCcCCcc-h-----
Confidence 332 455666 899999999 5553 2 4688899999999999999864 3
Q ss_pred ccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 248 DHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
.++ .+++|+.|++++ ..++. +..+++|++|++++|.+..+|. +..++.|+.|+..
T Consensus 151 ~l~--------~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 151 VLS--------RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELF 208 (291)
T ss_dssp GGG--------GCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEEEE
T ss_pred hhc--------cCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh---hccCCCCCEEECc
Confidence 566 899999999999 55555 8899999999999999988876 7888888888754
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.64 E-value=2.8e-15 Score=132.61 Aligned_cols=145 Identities=14% Similarity=0.106 Sum_probs=121.9
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC-CCCCCCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE-IIHSVPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~-lP~~l~~ 151 (353)
..+++++ ++++ .+|..+ . +.| ++|++++|.+++. .|..|..+++|++|+|++ ... .|..|.+
T Consensus 14 ~~v~c~~--------~~l~-~iP~~l--~-~~l--~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~ 78 (220)
T 2v9t_B 14 NIVDCRG--------KGLT-EIPTNL--P-ETI--TEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78 (220)
T ss_dssp TEEECTT--------SCCS-SCCSSC--C-TTC--CEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEcCC--------CCcC-cCCCcc--C-cCC--CEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence 3588888 8887 677643 2 678 9999999999985 555799999999999999 444 4788999
Q ss_pred CCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEE
Q 038586 152 YPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVE 231 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~ 231 (353)
+++|++|+|++|++++..+.. +..+.. ++++++++| ++++..|..|..+++|++|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~~~-------f~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 79 LRSLNSLVLYGNKITELPKSL-------FEGLFS-LQLLLLNAN----------------KINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp CSSCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhH-------ccCCCC-CCEEECCCC----------------CCCEeCHHHcCCCCCCCEEE
Confidence 999999999999998544444 566777 999999999 77777788899999999999
Q ss_pred cccCcCcccCCCCCccccchhhhhcccCCCccceeecCC
Q 038586 232 RYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ 270 (353)
Q Consensus 232 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 270 (353)
|++|++++..+ ..+. .+++|+.|++++
T Consensus 135 L~~N~l~~~~~----~~~~--------~l~~L~~L~L~~ 161 (220)
T 2v9t_B 135 LYDNKLQTIAK----GTFS--------PLRAIQTMHLAQ 161 (220)
T ss_dssp CCSSCCSCCCT----TTTT--------TCTTCCEEECCS
T ss_pred CCCCcCCEECH----HHHh--------CCCCCCEEEeCC
Confidence 99999998777 6778 899999999998
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=6.1e-16 Score=138.12 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=136.7
Q ss_pred CcEEEEEcCCCCCccccccC-CcccccHHHHHhhccccccEEEeec-CCCCCCCCCcccCCCCCCcEEeccC--CCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKI-LKGTISSALLLCLNCMIYDIWTLVT-INFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~-l~g~lp~~l~~L~~~L~~~~L~Ls~-N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~ 147 (353)
.+++.|++++ |. +++..+..|..+ ++| ++|++++ |.+++. .|..|.++++|++|++++ ...+|.
T Consensus 55 ~~L~~L~l~~--------n~~l~~i~~~~f~~l-~~L--~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~lp~ 122 (239)
T 2xwt_C 55 PNISRIYVSI--------DVTLQQLESHSFYNL-SKV--THIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKMFPD 122 (239)
T ss_dssp TTCCEEEEEC--------CSSCCEECTTTEESC-TTC--CEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCSCCC
T ss_pred CCCcEEeCCC--------CCCcceeCHhHcCCC-cCC--cEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCccccc
Confidence 4799999999 86 764334478888 999 9999999 999985 456799999999999999 666887
Q ss_pred CCCCCCCCC---EEEccCc-ccceecCccccccCCCcCCCCcccc-ceeccCCcCCCCCCCCCCCccccceeeeCCcchh
Q 038586 148 SVPEYPTLF---DVEGYMA-SLVQILEKDQHDEGSQNGQQGAEAE-AVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLS 222 (353)
Q Consensus 148 ~l~~L~~L~---~L~Ls~N-~l~g~lp~~~~L~l~~~~~l~~~l~-~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~ 222 (353)
++.+++|+ +|++++| .+++..+.. +..+.. ++ .+++++| +++ .+|....
T Consensus 123 -~~~l~~L~~L~~L~l~~N~~l~~i~~~~-------~~~l~~-L~~~L~l~~n----------------~l~-~i~~~~~ 176 (239)
T 2xwt_C 123 -LTKVYSTDIFFILEITDNPYMTSIPVNA-------FQGLCN-ETLTLKLYNN----------------GFT-SVQGYAF 176 (239)
T ss_dssp -CTTCCBCCSEEEEEEESCTTCCEECTTT-------TTTTBS-SEEEEECCSC----------------CCC-EECTTTT
T ss_pred -cccccccccccEEECCCCcchhhcCccc-------ccchhc-ceeEEEcCCC----------------CCc-ccCHhhc
Confidence 88889998 9999999 888655555 666777 88 9999999 666 4454443
Q ss_pred ccCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCC-CccceeecCC---CCCchhhcCCCCCCEEEccCCC
Q 038586 223 EVYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQE-AVEEEALLAQ---QNDPIELLCLDNILEIVESEVE 292 (353)
Q Consensus 223 ~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l-~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~ 292 (353)
..++|++|++++|+ +++..+ ..++ .+ ++|+.|++++ ..+|.. .+++|+.|+++++.
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~----~~~~--------~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDK----DAFG--------GVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECT----TTTT--------TCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCCCEEEcCCCCCcccCCH----HHhh--------ccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 44789999999995 987666 6677 88 9999999998 666765 67899999998763
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=3.2e-15 Score=132.95 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=72.6
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCC
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
..|..+++|++|+|++|++++..+ ..++ .+++|+.|++++ ..+|..+..+++|++|++++|++..
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~--------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPS----AVFD--------RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred hhcccCCCcCEEECCCCcCCccCh----hHhC--------cchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc
Confidence 345566677777777777766555 4455 667777777776 5667778888999999999999977
Q ss_pred CCcccccccCcccchhccccCCCccccccccc
Q 038586 296 LPDRLVFDVREFLSELDQIAEPRDEECGKLQA 327 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~ 327 (353)
+|+. .|..++.|+.|+...++..+.|..+..
T Consensus 150 ~~~~-~~~~l~~L~~L~l~~N~~~c~c~~~~~ 180 (229)
T 3e6j_A 150 IPHG-AFDRLSSLTHAYLFGNPWDCECRDIMY 180 (229)
T ss_dssp CCTT-TTTTCTTCCEEECTTSCBCTTBGGGHH
T ss_pred cCHH-HHhCCCCCCEEEeeCCCccCCcchhHH
Confidence 7752 689999999999999999988864433
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=7.4e-16 Score=146.35 Aligned_cols=163 Identities=12% Similarity=0.102 Sum_probs=126.9
Q ss_pred ccccceEecCC---------CCcEEEEEcCCCCCccccccCCcccccHHHH-HhhccccccEEEeecCCCCCCCCCcccC
Q 038586 60 CKWRGVCCNNT---------TSHFKVLNLRSSNDENARRKILKGTISSALL-LCLNCMIYDIWTLVTINFGGIPVPEFVG 129 (353)
Q Consensus 60 C~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~-~L~~~L~~~~L~Ls~N~l~~~~~P~~~~ 129 (353)
|.+..+.|... ...++.|+|++ |.+++..+..+. .+ ++| ++|+|++|.|++. .|..|.
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~--------N~l~~l~~~~~~~~l-~~L--~~L~L~~N~i~~i-~~~~~~ 85 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSH--------NNLSRLRAEWTPTRL-TNL--HSLLLSHNHLNFI-SSEAFV 85 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCS--------SCCCEECTTSSSSCC-TTC--CEEECCSSCCCEE-CTTTTT
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCC--------CCCCccChhhhhhcc-ccc--CEEECCCCcCCcc-Chhhcc
Confidence 67888888532 23578899999 999865555566 88 999 9999999999996 567799
Q ss_pred CCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCC
Q 038586 130 SLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNN 206 (353)
Q Consensus 130 ~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~ 206 (353)
++++|++|+|++ ...+|+ .|.++++|++|+|++|++++..|.. +..+.. ++.|++++|+++.+|
T Consensus 86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-------~~~l~~-L~~L~L~~N~l~~l~----- 152 (361)
T 2xot_A 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-------FEDMAQ-LQKLYLSQNQISRFP----- 152 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------TTTCTT-CCEEECCSSCCCSCC-----
T ss_pred CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH-------hCCccc-CCEEECCCCcCCeeC-----
Confidence 999999999999 666655 5889999999999999999877777 777888 999999999444333
Q ss_pred CccccceeeeCCcch---hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCc--cceeecCC
Q 038586 207 NVQTVEFEGEMEHSL---SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAV--EEEALLAQ 270 (353)
Q Consensus 207 ~l~~~~l~g~~p~~l---~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~--L~~L~L~~ 270 (353)
+..+ ..+++|++|+|++|+|++..+ ..+. .++. ++.|++++
T Consensus 153 -----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~--------~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 153 -----------VELIKDGNKLPKLMLLDLSSNKLKKLPL----TDLQ--------KLPAWVKNGLYLHN 198 (361)
T ss_dssp -----------GGGTC----CTTCCEEECCSSCCCCCCH----HHHH--------HSCHHHHTTEECCS
T ss_pred -----------HHHhcCcccCCcCCEEECCCCCCCccCH----HHhh--------hccHhhcceEEecC
Confidence 2223 578999999999999986554 4555 4554 35666666
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=4.3e-15 Score=129.77 Aligned_cols=148 Identities=9% Similarity=0.018 Sum_probs=108.8
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
+.++.+++.++. +|..+ .++|++|++++ ...+|. .++++++|++|++++|++++..+.. +..+..
T Consensus 10 ~~v~c~~~~l~~--~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~- 77 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-------FNKLTS- 77 (208)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------TTTCTT-
T ss_pred CEEEecCCCccC--CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh-------cCCCCC-
Confidence 678888898887 67655 46899999998 555655 4688999999999999888554444 556666
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
++++++++| ++++..+..+..+++|++|++++|++++..+ ..++ .+++|+.|
T Consensus 78 L~~L~Ls~n----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~--------~l~~L~~L 129 (208)
T 2o6s_A 78 LTYLNLSTN----------------QLQSLPNGVFDKLTQLKELALNTNQLQSLPD----GVFD--------KLTQLKDL 129 (208)
T ss_dssp CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEE
T ss_pred cCEEECCCC----------------cCCccCHhHhcCccCCCEEEcCCCcCcccCH----hHhc--------cCCcCCEE
Confidence 888888888 6665445567888889999999888887655 5566 77777777
Q ss_pred ecCC---CCCchh-hcCCCCCCEEEccCCCC-CCCC
Q 038586 267 LLAQ---QNDPIE-LLCLDNILEIVESEVEI-DSLP 297 (353)
Q Consensus 267 ~L~~---~~iP~~-l~~l~~L~~L~Ls~N~l-~~iP 297 (353)
++++ ..+|.. +..+++|++|++++|.+ +..|
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 7777 344443 66677777777777766 4444
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=4e-17 Score=156.15 Aligned_cols=202 Identities=13% Similarity=0.002 Sum_probs=125.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHH----HHHhhccccccEEEeecCC---CCCCCCCccc-------CCCCCCcEEe
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSA----LLLCLNCMIYDIWTLVTIN---FGGIPVPEFV-------GSLSKLSLNT 138 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~----l~~L~~~L~~~~L~Ls~N~---l~~~~~P~~~-------~~L~~L~~L~ 138 (353)
+++.|+|++ |.+++..+.. +..+ ++| ++|+|++|. +++. +|..+ ..+++|++|+
T Consensus 33 ~L~~L~L~~--------n~i~~~~~~~l~~~l~~~-~~L--~~L~Ls~~~~~~l~~~-~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 33 SVKEIVLSG--------NTIGTEAARWLSENIASK-KDL--EIAEFSDIFTGRVKDE-IPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp CCCEEECTT--------SEECHHHHHHHHHTTTTC-TTC--CEEECCSCCTTSCGGG-SHHHHHHHHHHHTTCTTCCEEE
T ss_pred CccEEECCC--------CCCCHHHHHHHHHHHHhC-CCc--cEEeCcccccCccccc-hhHHHHHHHHHHhhCCcccEEE
Confidence 578888888 7777654443 4467 788 888888854 3444 55544 6788888888
Q ss_pred ccC--CCC-----CCCCCCCCCCCCEEEccCccccee--------c------------CccccccCCCcCCC--------
Q 038586 139 VDH--QGE-----IIHSVPEYPTLFDVEGYMASLVQI--------L------------EKDQHDEGSQNGQQ-------- 183 (353)
Q Consensus 139 Ls~--~~~-----lP~~l~~L~~L~~L~Ls~N~l~g~--------l------------p~~~~L~l~~~~~l-------- 183 (353)
|++ .+. +|..+.++++|++|+|++|.+.+. + +.+++|++++|...
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 888 332 566777788888888888887531 1 55666666655332
Q ss_pred ------CccccceeccCCcCCCCCCCCCCCcccccee--e---eCCcchhccCCCCEEEcccCcCc----ccCCCCCccc
Q 038586 184 ------GAEAEAVCIQHNQANDIPCSSNNNVQTVEFE--G---EMEHSLSEVYDIFDVERYSSSLD----QILESERTED 248 (353)
Q Consensus 184 ------~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~--g---~~p~~l~~l~~L~~L~Ls~N~l~----g~~p~~~~~~ 248 (353)
.. ++++++++| .++ | .+|..+..+++|++|+|++|.++ +.+| ..
T Consensus 181 ~~l~~~~~-L~~L~L~~n----------------~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----~~ 239 (386)
T 2ca6_A 181 KTFQSHRL-LHTVKMVQN----------------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----IA 239 (386)
T ss_dssp HHHHHCTT-CCEEECCSS----------------CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----HH
T ss_pred HHHHhCCC-cCEEECcCC----------------CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----HH
Confidence 22 566666666 333 1 23335666677777777777764 3445 45
Q ss_pred cchhhhhcccCCCccceeecCCCC--------Cchhhc--CCCCCCEEEccCCCCCC-----CCccccc-ccCcccchhc
Q 038586 249 HGDAAIQNKQQEAVEEEALLAQQN--------DPIELL--CLDNILEIVESEVEIDS-----LPDRLVF-DVREFLSELD 312 (353)
Q Consensus 249 ~~~~~~~~~~~l~~L~~L~L~~~~--------iP~~l~--~l~~L~~L~Ls~N~l~~-----iP~~~~~-~~l~~L~~Ld 312 (353)
+. .+++|+.|++++.. +|..+. .+++|++|+|++|.++. +|. .+ .+++.|+.|+
T Consensus 240 l~--------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~--~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 240 LK--------SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT--VIDEKMPDLLFLE 309 (386)
T ss_dssp GG--------GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH--HHHHHCTTCCEEE
T ss_pred Hc--------cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH--HHHhcCCCceEEE
Confidence 55 66677777776622 244442 26677777777777733 666 44 4456666666
Q ss_pred cccCC
Q 038586 313 QIAEP 317 (353)
Q Consensus 313 ~~~~~ 317 (353)
...+.
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 54443
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=131.31 Aligned_cols=159 Identities=13% Similarity=0.163 Sum_probs=100.3
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGA 185 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~ 185 (353)
+++++++|.++. +|..+. ..+++|+|++ ...+ |. .+.++++|++|++++|++++..+.. +..+..
T Consensus 14 ~~l~~s~n~l~~--iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-------~~~l~~ 82 (220)
T 2v70_A 14 TTVDCSNQKLNK--IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-------FEGASG 82 (220)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-------TTTCTT
T ss_pred CEeEeCCCCccc--CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-------hCCCCC
Confidence 677888888776 666543 2345666666 3333 21 2455666666666666655444433 444444
Q ss_pred cccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccce
Q 038586 186 EAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEE 265 (353)
Q Consensus 186 ~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~ 265 (353)
+++|++++| ++++..|..|..+++|++|++++|++++..|
T Consensus 83 -L~~L~Ls~N----------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------- 122 (220)
T 2v70_A 83 -VNEILLTSN----------------RLENVQHKMFKGLESLKTLMLRSNRITCVGN----------------------- 122 (220)
T ss_dssp -CCEEECCSS----------------CCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-----------------------
T ss_pred -CCEEECCCC----------------ccCccCHhHhcCCcCCCEEECCCCcCCeECH-----------------------
Confidence 555555555 4443334445555555555555555544333
Q ss_pred eecCCCCCchhhcCCCCCCEEEccCCCCCCC-CcccccccCcccchhccccCCCcccccccccccc
Q 038586 266 ALLAQQNDPIELLCLDNILEIVESEVEIDSL-PDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 266 L~L~~~~iP~~l~~l~~L~~L~Ls~N~l~~i-P~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
..+..+++|++|+|++|++..+ |. .|..++.|+.|+...++..+.|...+...|
T Consensus 123 ---------~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~ 177 (220)
T 2v70_A 123 ---------DSFIGLSSVRLLSLYDNQITTVAPG--AFDTLHSLSTLNLLANPFNCNCYLAWLGEW 177 (220)
T ss_dssp ---------TSSTTCTTCSEEECTTSCCCCBCTT--TTTTCTTCCEEECCSCCEECSGGGHHHHHH
T ss_pred ---------hHcCCCccCCEEECCCCcCCEECHH--HhcCCCCCCEEEecCcCCcCCCchHHHHHH
Confidence 4566778999999999999544 77 899999999999999999888886555555
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=1.1e-15 Score=138.99 Aligned_cols=165 Identities=13% Similarity=0.041 Sum_probs=133.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVP 150 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~ 150 (353)
+++.++++. +.++ .++ .+..+ ++| ++|++++|.++. +| .+..+++|++|++++ ...+|+ ++
T Consensus 20 ~l~~l~l~~--------~~i~-~~~-~~~~l-~~L--~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~~~~-l~ 82 (263)
T 1xeu_A 20 NAVKQNLGK--------QSVT-DLV-SQKEL-SGV--QNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISDLSP-LK 82 (263)
T ss_dssp HHHHHHHTC--------SCTT-SEE-CHHHH-TTC--SEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred HHHHHHhcC--------CCcc-ccc-chhhc-CcC--cEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCCChh-hc
Confidence 345566676 7776 455 57888 999 999999999987 67 688999999999999 666776 99
Q ss_pred CCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEE
Q 038586 151 EYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDV 230 (353)
Q Consensus 151 ~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L 230 (353)
++++|++|++++|++++ +|.. .. .. ++.+++++| ++++ + +.+..+++|++|
T Consensus 83 ~l~~L~~L~L~~N~l~~-l~~~-------~~--~~-L~~L~L~~N----------------~l~~-~-~~l~~l~~L~~L 133 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKN-LNGI-------PS--AC-LSRLFLDNN----------------ELRD-T-DSLIHLKNLEIL 133 (263)
T ss_dssp TCSSCCEEECCSSCCSC-CTTC-------CC--SS-CCEEECCSS----------------CCSB-S-GGGTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCC-cCcc-------cc--Cc-ccEEEccCC----------------ccCC-C-hhhcCcccccEE
Confidence 99999999999999985 5543 22 44 899999999 5554 2 358899999999
Q ss_pred EcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 231 ERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 231 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
++++|++++. | .++ .+++|+.|++++ ..+ ..+..+++|+.|++++|++...|.
T Consensus 134 ~Ls~N~i~~~-~-----~l~--------~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 134 SIRNNKLKSI-V-----MLG--------FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp ECTTSCCCBC-G-----GGG--------GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred ECCCCcCCCC-h-----HHc--------cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 9999999863 4 466 899999999999 333 568889999999999999955564
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=1.3e-15 Score=153.06 Aligned_cols=156 Identities=13% Similarity=0.103 Sum_probs=113.1
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|+|++ |.++ .+| ..+ ++| ++|++++|.|++ +|. +.+ +|++|+|++ ...+|.
T Consensus 80 ~~L~~L~Ls~--------N~l~-~ip---~~l-~~L--~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~lp~-- 137 (571)
T 3cvr_A 80 PQITVLEITQ--------NALI-SLP---ELP-ASL--EYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLTMLPE-- 137 (571)
T ss_dssp TTCSEEECCS--------SCCS-CCC---CCC-TTC--CEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCSCCCC--
T ss_pred CCCCEEECcC--------CCCc-ccc---ccc-CCC--CEEEccCCCCCC--cch-hhc--CCCEEECCCCcCCCCCC--
Confidence 4789999999 8888 788 346 899 999999999998 788 665 999999999 566887
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCcccc-----ceeeeCCcchhcc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTV-----EFEGEMEHSLSEV 224 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~-----~l~g~~p~~l~~l 224 (353)
.+++|++|++++|.+++ +|.. +.. ++.|++++|+++.+|. ....++.+ .++ .+|. +..
T Consensus 138 -~l~~L~~L~Ls~N~l~~-lp~~----------l~~-L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~-~lp~-~~~- 200 (571)
T 3cvr_A 138 -LPALLEYINADNNQLTM-LPEL----------PTS-LEVLSVRNNQLTFLPE-LPESLEALDVSTNLLE-SLPA-VPV- 200 (571)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCC----------CTT-CCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS-SCCC-CC--
T ss_pred -cCccccEEeCCCCccCc-CCCc----------CCC-cCEEECCCCCCCCcch-hhCCCCEEECcCCCCC-chhh-HHH-
Confidence 68999999999999985 5531 122 4555555555555544 11333322 333 3454 443
Q ss_pred CCC-------CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC----CCCchhhcCC
Q 038586 225 YDI-------FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ----QNDPIELLCL 280 (353)
Q Consensus 225 ~~L-------~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~----~~iP~~l~~l 280 (353)
+| ++|++++|+|+. +| ..+. .+++|+.|++++ +.+|..+..+
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~-lp----~~l~--------~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITH-IP----ENIL--------SLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp --------CCEEEECCSSCCCC-CC----GGGG--------GSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -hhhcccccceEEecCCCccee-cC----HHHh--------cCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 56 999999999985 78 7788 899999999999 4556666554
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=4e-15 Score=150.66 Aligned_cols=166 Identities=11% Similarity=0.079 Sum_probs=136.3
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
.+++.|++++ +.+. .+| .+..+ ++| ++|+|++|.+++ +|+ +..+++|++|+|++ ...+| .+
T Consensus 43 ~~L~~L~l~~--------n~i~-~l~-~l~~l-~~L--~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~-~l 105 (605)
T 1m9s_A 43 NSIDQIIANN--------SDIK-SVQ-GIQYL-PNV--TKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKDLS-SL 105 (605)
T ss_dssp TTCCCCBCTT--------CCCC-CCT-TGGGC-TTC--CEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCT-TS
T ss_pred CCCCEEECcC--------CCCC-CCh-HHccC-CCC--CEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCCCh-hh
Confidence 3678889998 7776 455 58888 999 999999999998 455 89999999999999 55555 78
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
+.+++|++|+|++|.+.+ ++. +..+.. |+.|++++| .+++. ..++.+++|+.
T Consensus 106 ~~l~~L~~L~Ls~N~l~~-l~~--------l~~l~~-L~~L~Ls~N----------------~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISD-ING--------LVHLPQ-LESLYLGNN----------------KITDI--TVLSRLTKLDT 157 (605)
T ss_dssp TTCTTCCEEECTTSCCCC-CGG--------GGGCTT-CSEEECCSS----------------CCCCC--GGGGSCTTCSE
T ss_pred ccCCCCCEEEecCCCCCC-Ccc--------ccCCCc-cCEEECCCC----------------ccCCc--hhhcccCCCCE
Confidence 999999999999999885 332 455666 899999999 55543 57889999999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLP 297 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP 297 (353)
|+|++|++.+..| ++ .+++|+.|+|++ ..+| .+..+++|+.|+|++|.+...|
T Consensus 158 L~Ls~N~l~~~~~------l~--------~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 158 LSLEDNQISDIVP------LA--------GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp EECCSSCCCCCGG------GT--------TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred EECcCCcCCCchh------hc--------cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence 9999999987443 66 899999999999 4454 6889999999999999994444
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.60 E-value=2e-16 Score=150.18 Aligned_cols=83 Identities=8% Similarity=-0.012 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCCccccccCCccccc----HHHHHhhc-cccccEEEeecCCCCCCCCCcccCCC-----CCCcEEeccC-
Q 038586 73 HFKVLNLRSSNDENARRKILKGTIS----SALLLCLN-CMIYDIWTLVTINFGGIPVPEFVGSL-----SKLSLNTVDH- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp----~~l~~L~~-~L~~~~L~Ls~N~l~~~~~P~~~~~L-----~~L~~L~Ls~- 141 (353)
+++.|+|++ |.+++.-+ ..+..+ + +| ++|+|++|.+++. .+..+..+ ++|++|+|++
T Consensus 23 ~L~~L~Ls~--------n~l~~~~~~~l~~~l~~~-~~~L--~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 23 GVTSLDLSL--------NNLYSISTVELIQAFANT-PASV--TSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp TCCEEECTT--------SCGGGSCHHHHHHHHHTC-CTTC--CEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSS
T ss_pred CceEEEccC--------CCCChHHHHHHHHHHHhC-CCce--eEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCC
Confidence 578888888 77765555 455666 6 78 8888888888776 56556554 7888888887
Q ss_pred -CC-CCCCC----CCCC-CCCCEEEccCcccce
Q 038586 142 -QG-EIIHS----VPEY-PTLFDVEGYMASLVQ 167 (353)
Q Consensus 142 -~~-~lP~~----l~~L-~~L~~L~Ls~N~l~g 167 (353)
.+ ..+.. +..+ ++|++|++++|.+++
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 33 22322 3334 788888888888764
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.5e-14 Score=146.48 Aligned_cols=170 Identities=12% Similarity=0.055 Sum_probs=139.4
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccce
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
+.+...++ +..+ ++| +.|++++|.+.. +| .+..+++|+.|+|++ ...+|+ +..+++|++|+|++|.+.+
T Consensus 31 ~~i~~~~~--~~~L-~~L--~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 31 KSVTDAVT--QNEL-NSI--DQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp SCTTSEEC--HHHH-TTC--CCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred CCcccccc--hhcC-CCC--CEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC
Confidence 55554443 5678 999 999999999987 55 589999999999999 566666 8999999999999999884
Q ss_pred ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCcc
Q 038586 168 ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTE 247 (353)
Q Consensus 168 ~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 247 (353)
+| . +..+.. |+.|++++| .+.+ + +.+..+++|+.|+|++|++++. +
T Consensus 102 -l~-~-------l~~l~~-L~~L~Ls~N----------------~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~----- 147 (605)
T 1m9s_A 102 -LS-S-------LKDLKK-LKSLSLEHN----------------GISD-I-NGLVHLPQLESLYLGNNKITDI-T----- 147 (605)
T ss_dssp -CT-T-------STTCTT-CCEEECTTS----------------CCCC-C-GGGGGCTTCSEEECCSSCCCCC-G-----
T ss_pred -Ch-h-------hccCCC-CCEEEecCC----------------CCCC-C-ccccCCCccCEEECCCCccCCc-h-----
Confidence 34 2 556667 899999999 5553 2 4588999999999999999864 3
Q ss_pred ccchhhhhcccCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 248 DHGDAAIQNKQQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 248 ~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
.++ .+++|+.|+|++ ..+++ +..+++|+.|+|++|.|..+|. +..++.|+.|+..
T Consensus 148 ~l~--------~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~---l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 148 VLS--------RLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLELF 205 (605)
T ss_dssp GGG--------SCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEECC
T ss_pred hhc--------ccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH---HccCCCCCEEEcc
Confidence 567 899999999999 44444 8899999999999999977755 7888899888754
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.7e-14 Score=125.09 Aligned_cols=144 Identities=8% Similarity=0.025 Sum_probs=121.0
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
+++.|++++ +.++ .+| .+..+ ++| ++|++++|.++. ++.+..+++|++|++++ .+..|..+
T Consensus 45 ~L~~L~l~~--------n~i~-~l~-~l~~l-~~L--~~L~l~~n~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~l 108 (197)
T 4ezg_A 45 SLTYITLAN--------INVT-DLT-GIEYA-HNI--KDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNL 108 (197)
T ss_dssp TCCEEEEES--------SCCS-CCT-TGGGC-TTC--SEEEEESCCCSC---CGGGTTCTTCCEEEEECTTCBGGGSCCC
T ss_pred CccEEeccC--------CCcc-ChH-HHhcC-CCC--CEEEccCCCCCc---chhhhcCCCCCEEEeECCccCcccChhh
Confidence 688999999 8887 777 68889 999 999999997764 45789999999999999 44578889
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
+.+++|++|++++|.+++..|.. +..+.. ++++++++| .+.+.+| .+..+++|++
T Consensus 109 ~~l~~L~~L~Ls~n~i~~~~~~~-------l~~l~~-L~~L~L~~n----------------~~i~~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 109 SGLTSLTLLDISHSAHDDSILTK-------INTLPK-VNSIDLSYN----------------GAITDIM-PLKTLPELKS 163 (197)
T ss_dssp TTCTTCCEEECCSSBCBGGGHHH-------HTTCSS-CCEEECCSC----------------TBCCCCG-GGGGCSSCCE
T ss_pred cCCCCCCEEEecCCccCcHhHHH-------HhhCCC-CCEEEccCC----------------CCccccH-hhcCCCCCCE
Confidence 99999999999999999866666 667777 999999999 5333455 6889999999
Q ss_pred EEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCC
Q 038586 230 VERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQ 271 (353)
Q Consensus 230 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 271 (353)
|++++|++++ ++ .+. .+++|+.|++++.
T Consensus 164 L~l~~n~i~~-~~-----~l~--------~l~~L~~L~l~~N 191 (197)
T 4ezg_A 164 LNIQFDGVHD-YR-----GIE--------DFPKLNQLYAFSQ 191 (197)
T ss_dssp EECTTBCCCC-CT-----TGG--------GCSSCCEEEECBC
T ss_pred EECCCCCCcC-hH-----Hhc--------cCCCCCEEEeeCc
Confidence 9999999976 33 456 7899999999873
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.7e-16 Score=150.72 Aligned_cols=83 Identities=10% Similarity=-0.024 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHh----hccccccEEEeecCCCCCCCCCcc----cCCC-CCCcEEeccC--
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLC----LNCMIYDIWTLVTINFGGIPVPEF----VGSL-SKLSLNTVDH-- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L----~~~L~~~~L~Ls~N~l~~~~~P~~----~~~L-~~L~~L~Ls~-- 141 (353)
+++.|+|++ |.+++..+..+..+ +++| ++|+|++|.+++. .+.. +..+ ++|++|+|++
T Consensus 52 ~L~~L~Ls~--------N~l~~~~~~~l~~~l~~~~~~L--~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 52 SVTSLNLSG--------NSLGFKNSDELVQILAAIPANV--TSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TCCEEECCS--------SCGGGSCHHHHHHHHHTSCTTC--CEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ceeEEECcC--------CCCCHHHHHHHHHHHhccCCCc--cEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCc
Confidence 566666666 66665555555442 1456 6667777666654 3432 2233 6667776666
Q ss_pred CCCCCC-C----CCC-CCCCCEEEccCcccc
Q 038586 142 QGEIIH-S----VPE-YPTLFDVEGYMASLV 166 (353)
Q Consensus 142 ~~~lP~-~----l~~-L~~L~~L~Ls~N~l~ 166 (353)
.+..+. . +.. .++|++|++++|.+.
T Consensus 121 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp GGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred CCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 222221 1 223 246666777666665
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=1.9e-14 Score=124.40 Aligned_cols=122 Identities=13% Similarity=0.080 Sum_probs=102.4
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC---CCCCCCCCCCCCCCCEEEccCccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH---QGEIIHSVPEYPTLFDVEGYMASL 165 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~---~~~lP~~l~~L~~L~~L~Ls~N~l 165 (353)
++++ .+|..+ . .++ ++|++++|.+++. .|. .|+.+++|++|+|++ .+..|..++++++|++|+|++|++
T Consensus 18 ~~l~-~ip~~~--~-~~l--~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 18 RGLK-EIPRDI--P-LHT--TELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp SCCS-SCCSCC--C-TTC--SEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CCcC-cCccCC--C-CCC--CEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 6774 777643 2 578 9999999999985 333 489999999999999 445578899999999999999999
Q ss_pred ceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCC
Q 038586 166 VQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 166 ~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
++..|.. +..+.. ++++++++| ++++..|..+..+++|++|++++|++.+..+
T Consensus 91 ~~~~~~~-------~~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 91 KEISNKM-------FLGLHQ-LKTLNLYDN----------------QISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CEECSSS-------STTCTT-CCEEECCSS----------------CCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CccCHHH-------hcCCCC-CCEEECCCC----------------cCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9887776 677777 999999999 8888889999999999999999999987554
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=1e-15 Score=143.20 Aligned_cols=180 Identities=8% Similarity=0.027 Sum_probs=115.5
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC---CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH---QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~---~~~lP~~l 149 (353)
+++.+++++ +.+.+..+. +..+ ++| ++|++++|.+++..+|..+..+++|++|++++ .+..|..+
T Consensus 71 ~l~~L~l~~--------n~l~~~~~~-~~~~-~~L--~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 71 GVIAFRCPR--------SFMDQPLAE-HFSP-FRV--QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp TCSEEECTT--------CEECSCCCS-CCCC-BCC--CEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred cceEEEcCC--------ccccccchh-hccC-CCC--CEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence 566677776 666554443 4455 666 77777766665322455566666777777666 33445556
Q ss_pred CCCCCCCEEEccCc-ccce--------ecCccccccCCCc-C-----------CCC-ccccceeccCCcCCCCCCCCCCC
Q 038586 150 PEYPTLFDVEGYMA-SLVQ--------ILEKDQHDEGSQN-G-----------QQG-AEAEAVCIQHNQANDIPCSSNNN 207 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N-~l~g--------~lp~~~~L~l~~~-~-----------~l~-~~l~~l~l~~N~l~~i~~~~~~~ 207 (353)
+++++|++|++++| .+++ .+|.+++|+++++ . .+. . ++++++++|.+
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~-L~~L~l~~~~~---------- 207 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET-ITQLNLSGYRK---------- 207 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT-CCEEECCSCGG----------
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC-CCEEEeCCCcc----------
Confidence 66666777777666 3442 2344455555444 1 122 3 66666766610
Q ss_pred cccccee-eeCCcchhccCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCCCccceeecCC-CCC-ch---hhcCC
Q 038586 208 VQTVEFE-GEMEHSLSEVYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ-QND-PI---ELLCL 280 (353)
Q Consensus 208 l~~~~l~-g~~p~~l~~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~i-P~---~l~~l 280 (353)
.++ +.+|..+..+++|++|++++|. +++..+ ..++ .+++|++|++++ ..+ |. .+..+
T Consensus 208 ----~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~--------~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 208 ----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF----QEFF--------QLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp ----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG----GGGG--------GCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred ----cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH----HHHh--------CCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 122 3466777889999999999998 666666 6777 889999999988 233 33 47788
Q ss_pred CCCCEEEccCC
Q 038586 281 DNILEIVESEV 291 (353)
Q Consensus 281 ~~L~~L~Ls~N 291 (353)
++|++|++++|
T Consensus 272 ~~L~~L~l~~~ 282 (336)
T 2ast_B 272 PTLKTLQVFGI 282 (336)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEeccCc
Confidence 99999999988
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=9.2e-17 Score=161.59 Aligned_cols=158 Identities=11% Similarity=0.005 Sum_probs=103.7
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCC-------------CCCCCCCcccCCCCCCcEEe-ccC--------------
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTIN-------------FGGIPVPEFVGSLSKLSLNT-VDH-------------- 141 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-------------l~~~~~P~~~~~L~~L~~L~-Ls~-------------- 141 (353)
|.++ .+|++++++ ++| +.|++++|. +.+. .|..++.+++|+.|+ ++.
T Consensus 359 n~L~-~Lp~~i~~l-~~L--~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n 433 (567)
T 1dce_A 359 EKST-VLQSELESC-KEL--QELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433 (567)
T ss_dssp HHHH-HHHHHHHHH-HHH--HHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hhHH-hhHHHHHHH-HHH--HHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhhcccchhhhhhhhcc
Confidence 6665 778888887 888 888876654 4554 566677777777776 332
Q ss_pred -CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcc
Q 038586 142 -QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHS 220 (353)
Q Consensus 142 -~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~ 220 (353)
...+|. ..|++|++++|.+++ +|. ++.+.. ++.|++++| .++ .+|..
T Consensus 434 ~i~~l~~-----~~L~~L~Ls~n~l~~-lp~--------~~~l~~-L~~L~Ls~N----------------~l~-~lp~~ 481 (567)
T 1dce_A 434 SVLKMEY-----ADVRVLHLAHKDLTV-LCH--------LEQLLL-VTHLDLSHN----------------RLR-ALPPA 481 (567)
T ss_dssp HHHHHHH-----TTCSEEECTTSCCSS-CCC--------GGGGTT-CCEEECCSS----------------CCC-CCCGG
T ss_pred cccccCc-----cCceEEEecCCCCCC-CcC--------cccccc-CcEeecCcc----------------ccc-ccchh
Confidence 111121 146777777777764 442 334445 677777777 555 56777
Q ss_pred hhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCC--chhhcCCCCCCEEEccCCCCCC
Q 038586 221 LSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QND--PIELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 221 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~i--P~~l~~l~~L~~L~Ls~N~l~~ 295 (353)
++.+++|++|+|++|+|++ +| .++ .+++|+.|++++ ..+ |..+..+++|+.|+|++|.+..
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-----~l~--------~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-----GVA--------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-----GGT--------TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-----ccC--------CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 7777777777777777775 44 456 677777777777 333 6777777777777777777744
Q ss_pred CCc
Q 038586 296 LPD 298 (353)
Q Consensus 296 iP~ 298 (353)
+|+
T Consensus 548 ~~~ 550 (567)
T 1dce_A 548 EEG 550 (567)
T ss_dssp SSS
T ss_pred Ccc
Confidence 444
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=1.9e-14 Score=121.33 Aligned_cols=137 Identities=10% Similarity=0.108 Sum_probs=73.9
Q ss_pred ccccccEEEeecCCCC-CCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcC
Q 038586 105 NCMIYDIWTLVTINFG-GIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNG 181 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~-~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~ 181 (353)
++| ++|++++|.++ +. +|..+..+++|++|++++ ...+ ..++.+++|++|++++|.+++.+|.. ..
T Consensus 24 ~~L--~~L~l~~n~l~~~~-i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~ 92 (168)
T 2ell_A 24 AAV--RELVLDNCKSNDGK-IEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML-------AE 92 (168)
T ss_dssp TSC--SEEECCSCBCBTTB-CSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHH-------HH
T ss_pred ccC--CEEECCCCCCChhh-HHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHH-------Hh
Confidence 456 66666666666 33 566556666666666665 3333 45666666666666666665444433 22
Q ss_pred CCCccccceeccCCcCCCCCCCCCCCccccceeee-CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCC
Q 038586 182 QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE-MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQE 260 (353)
Q Consensus 182 ~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l 260 (353)
.+.. ++++++++| .+++. .+..+..+++|++|++++|++++..+ . .
T Consensus 93 ~l~~-L~~L~Ls~N----------------~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~-~----------- 139 (168)
T 2ell_A 93 KLPN-LTHLNLSGN----------------KLKDISTLEPLKKLECLKSLDLFNCEVTNLND----Y-R----------- 139 (168)
T ss_dssp HCTT-CCEEECBSS----------------SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----H-H-----------
T ss_pred hCCC-CCEEeccCC----------------ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH----H-H-----------
Confidence 2333 444444444 22221 11344455555555555555543211 0 0
Q ss_pred CccceeecCCCCCchhhcCCCCCCEEEccCCCCCCCCc
Q 038586 261 AVEEEALLAQQNDPIELLCLDNILEIVESEVEIDSLPD 298 (353)
Q Consensus 261 ~~L~~L~L~~~~iP~~l~~l~~L~~L~Ls~N~l~~iP~ 298 (353)
...+..+++|++|++++|.+..+|+
T Consensus 140 -------------~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 140 -------------ESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp -------------HHHHTTCSSCCEETTEETTSCBCCS
T ss_pred -------------HHHHHhCccCcEecCCCCChhhccc
Confidence 0145667778888888887777766
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=9.9e-14 Score=119.89 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=82.6
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC--CCCCCCCCEEEccCcccceecCccccccCCCcCCCCc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS--VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGA 185 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~--l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~ 185 (353)
+++++++|.++. +|..+.. +|++|++++ ...+|+. ++++++|++|++++|++++..|.. +..+..
T Consensus 11 ~~l~~s~~~l~~--ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLKE--IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-------FEGASH 79 (192)
T ss_dssp TEEECTTSCCSS--CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-------TTTCTT
T ss_pred CEEEcCCCCcCc--CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-------cCCccc
Confidence 788999999976 7876654 888888888 6666653 788888888888888888777766 666777
Q ss_pred cccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCC
Q 038586 186 EAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 186 ~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
++++++++| ++++..|..|..+++|++|++++|++++..|
T Consensus 80 -L~~L~Ls~N----------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 80 -IQELQLGEN----------------KIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp -CCEEECCSC----------------CCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred -CCEEECCCC----------------cCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 788888888 7777667777788888888888888877666
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=1.2e-14 Score=150.42 Aligned_cols=156 Identities=10% Similarity=0.000 Sum_probs=101.5
Q ss_pred ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-------CCCCCCCCCCCCCCCEEEccCcccceecCccccccC
Q 038586 105 NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-------QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEG 177 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-------~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l 177 (353)
+++ +.|+|.+|.+.. .|..+.....|..+.+.. ....|..+..+++|+.|+|++|.+. .+|..
T Consensus 173 ~~~--~~l~L~~n~~~~--~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~----- 242 (727)
T 4b8c_D 173 PLT--PKIELFANGKDE--ANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISAN----- 242 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGG-----
T ss_pred Ccc--ceEEeeCCCCCc--chhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChh-----
Confidence 456 888999999887 566665556666665544 2344677899999999999999998 77765
Q ss_pred CCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcc
Q 038586 178 SQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNK 257 (353)
Q Consensus 178 ~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~ 257 (353)
...+.. +++|+|++| .++ .+|.+|+++++|++|+|++|+|+ .+| ..++
T Consensus 243 --~~~l~~-L~~L~Ls~N----------------~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp----~~~~------- 290 (727)
T 4b8c_D 243 --IFKYDF-LTRLYLNGN----------------SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLP----AELG------- 290 (727)
T ss_dssp --GGGCCS-CSCCBCTTS----------------CCS-CCCGGGGGGTTCCEEECTTSCCS-SCC----SSGG-------
T ss_pred --hcCCCC-CCEEEeeCC----------------cCc-ccChhhhCCCCCCEEeCcCCcCC-ccC----hhhc-------
Confidence 456666 999999999 777 78999999999999999999998 678 7888
Q ss_pred cCCCccceeecCC---CCCchhhcCCCCCCEEEccCCCC-CCCCcccccccC
Q 038586 258 QQEAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEI-DSLPDRLVFDVR 305 (353)
Q Consensus 258 ~~l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l-~~iP~~~~~~~l 305 (353)
.+++|+.|+|++ +.+|..++.+++|++|+|++|.| +.+|. .+..+
T Consensus 291 -~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~ 339 (727)
T 4b8c_D 291 -SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK--ILTEK 339 (727)
T ss_dssp -GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH--HHHHH
T ss_pred -CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH--HHhhc
Confidence 999999999998 88999999999999999999999 77777 55444
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=7.8e-16 Score=147.19 Aligned_cols=189 Identities=15% Similarity=0.128 Sum_probs=131.0
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHH-------HHhhccccccEEEeecCCCCC----CCCCcccCCCCCCcEEecc
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSAL-------LLCLNCMIYDIWTLVTINFGG----IPVPEFVGSLSKLSLNTVD 140 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l-------~~L~~~L~~~~L~Ls~N~l~~----~~~P~~~~~L~~L~~L~Ls 140 (353)
.+++.|+|+++.. +.+.|.+|..+ ..+ ++| ++|+|++|.+++ . +|..+..+++|++|+|+
T Consensus 60 ~~L~~L~Ls~~~~-----~~l~~~~~~~~~~l~~~l~~~-~~L--~~L~Ls~n~l~~~~~~~-l~~~l~~~~~L~~L~L~ 130 (386)
T 2ca6_A 60 KDLEIAEFSDIFT-----GRVKDEIPEALRLLLQALLKC-PKL--HTVRLSDNAFGPTAQEP-LIDFLSKHTPLEHLYLH 130 (386)
T ss_dssp TTCCEEECCSCCT-----TSCGGGSHHHHHHHHHHHTTC-TTC--CEEECCSCCCCTTTHHH-HHHHHHHCTTCCEEECC
T ss_pred CCccEEeCccccc-----CccccchhHHHHHHHHHHhhC-Ccc--cEEECCCCcCCHHHHHH-HHHHHHhCCCCCEEECc
Confidence 3677777777322 34556666544 466 777 777888777776 3 56667777777777777
Q ss_pred C--CC-----CCCCCCCCC---------CCCCEEEccCcccc-e----------ecCccccccCCCcCC-----------
Q 038586 141 H--QG-----EIIHSVPEY---------PTLFDVEGYMASLV-Q----------ILEKDQHDEGSQNGQ----------- 182 (353)
Q Consensus 141 ~--~~-----~lP~~l~~L---------~~L~~L~Ls~N~l~-g----------~lp~~~~L~l~~~~~----------- 182 (353)
+ .+ .++..+..+ ++|++|++++|++. + ..+.+++|+++++..
T Consensus 131 ~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 210 (386)
T 2ca6_A 131 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210 (386)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence 7 21 122223333 67777777777765 2 234567777776543
Q ss_pred ----CCccccceeccCCcCCCCCCCCCCCcccccee----eeCCcchhccCCCCEEEcccCcCccc----CCCCCccccc
Q 038586 183 ----QGAEAEAVCIQHNQANDIPCSSNNNVQTVEFE----GEMEHSLSEVYDIFDVERYSSSLDQI----LESERTEDHG 250 (353)
Q Consensus 183 ----l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~----g~~p~~l~~l~~L~~L~Ls~N~l~g~----~p~~~~~~~~ 250 (353)
+.. ++.|++++| .++ +.+|..+..+++|++|+|++|++++. +| ..+.
T Consensus 211 ~l~~~~~-L~~L~Ls~n----------------~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~----~~l~ 269 (386)
T 2ca6_A 211 GLAYCQE-LKVLDLQDN----------------TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV----DAFS 269 (386)
T ss_dssp TGGGCTT-CCEEECCSS----------------CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH----HHHH
T ss_pred HhhcCCC-ccEEECcCC----------------CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH----HHHh
Confidence 234 788899999 665 56788899999999999999999765 34 3332
Q ss_pred hhhhhcccCCCccceeecCC---C-----CCchhh-cCCCCCCEEEccCCCCCCC
Q 038586 251 DAAIQNKQQEAVEEEALLAQ---Q-----NDPIEL-LCLDNILEIVESEVEIDSL 296 (353)
Q Consensus 251 ~~~~~~~~~l~~L~~L~L~~---~-----~iP~~l-~~l~~L~~L~Ls~N~l~~i 296 (353)
...+++|+.|++++ + .+|..+ .++++|++|++++|.++..
T Consensus 270 ------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 270 ------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp ------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred ------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 00489999999999 2 267676 5689999999999999433
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=1e-13 Score=117.87 Aligned_cols=132 Identities=9% Similarity=0.096 Sum_probs=100.9
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEec
Q 038586 60 CKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTV 139 (353)
Q Consensus 60 C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~L 139 (353)
|.|.++.|+. ++++ .+|..+ . ++| ++|++++|.+++. .+..+..+++|++|++
T Consensus 7 C~~~~l~~~~--------------------~~l~-~~p~~~--~-~~l--~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l 59 (177)
T 2o6r_A 7 CSGTEIRCNS--------------------KGLT-SVPTGI--P-SSA--TRLELESNKLQSL-PHGVFDKLTQLTKLSL 59 (177)
T ss_dssp EETTEEECCS--------------------SCCS-SCCTTC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCSEEEC
T ss_pred eCCCEEEecC--------------------CCCc-cCCCCC--C-CCC--cEEEeCCCcccEe-CHHHhcCcccccEEEC
Confidence 6788888753 4554 455432 3 678 9999999999985 5556789999999999
Q ss_pred cC--CCCCCCC-CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeee
Q 038586 140 DH--QGEIIHS-VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE 216 (353)
Q Consensus 140 s~--~~~lP~~-l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~ 216 (353)
++ ...+|+. ++.+++|++|++++|++++..+.. +..+.. ++++++++| ++++.
T Consensus 60 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------~~~l~~-L~~L~l~~N----------------~l~~~ 115 (177)
T 2o6r_A 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV-------FDKLTQ-LKELALDTN----------------QLKSV 115 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTT-CCEEECCSS----------------CCSCC
T ss_pred CCCcceEeChhHccCCCccCEEECCCCCccccCHHH-------hhCCcc-cCEEECcCC----------------cceEe
Confidence 98 5666654 688999999999999998665555 566667 889999999 66644
Q ss_pred CCcchhccCCCCEEEcccCcCcccCC
Q 038586 217 MEHSLSEVYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 217 ~p~~l~~l~~L~~L~Ls~N~l~g~~p 242 (353)
.+..+..+++|++|++++|++.+..|
T Consensus 116 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 116 PDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CHHHhcCCcccCEEEecCCCeeccCc
Confidence 44556788999999999999887554
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.49 E-value=3.9e-14 Score=116.99 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=95.0
Q ss_pred ccccccEEEeecCCCC-CCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcC
Q 038586 105 NCMIYDIWTLVTINFG-GIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNG 181 (353)
Q Consensus 105 ~~L~~~~L~Ls~N~l~-~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~ 181 (353)
++| ++|++++|.++ +. +|..+..+++|++|++++ ...+ ..++++++|++|++++|.+++.+|.. ..
T Consensus 17 ~~l--~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~-------~~ 85 (149)
T 2je0_A 17 SDV--KELVLDNSRSNEGK-LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL-------AE 85 (149)
T ss_dssp GGC--SEEECTTCBCBTTB-CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHH-------HH
T ss_pred ccC--eEEEccCCcCChhH-HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHH-------hh
Confidence 677 99999999998 55 888888999999999988 4445 67888999999999999988767766 55
Q ss_pred CCCccccceeccCCcCCCCCCCCCCCccccceeee-CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCC
Q 038586 182 QQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGE-MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQE 260 (353)
Q Consensus 182 ~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l 260 (353)
.+.. ++++++++| .+++. .|..++.+++|++|++++|++++..+ .....++ .+
T Consensus 86 ~l~~-L~~L~ls~N----------------~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~--------~l 139 (149)
T 2je0_A 86 KCPN-LTHLNLSGN----------------KIKDLSTIEPLKKLENLKSLDLFNCEVTNLND-YRENVFK--------LL 139 (149)
T ss_dssp HCTT-CCEEECTTS----------------CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT-HHHHHHH--------HC
T ss_pred hCCC-CCEEECCCC----------------cCCChHHHHHHhhCCCCCEEeCcCCcccchHH-HHHHHHH--------HC
Confidence 5666 888888888 55542 34678888889999999888876432 0001344 56
Q ss_pred CccceeecC
Q 038586 261 AVEEEALLA 269 (353)
Q Consensus 261 ~~L~~L~L~ 269 (353)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 666666654
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=1.3e-13 Score=130.18 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=144.3
Q ss_pred EEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCc-ccCCCCCCcEEeccC---CCCCCC-CCC
Q 038586 76 VLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPE-FVGSLSKLSLNTVDH---QGEIIH-SVP 150 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~-~~~~L~~L~~L~Ls~---~~~lP~-~l~ 150 (353)
.++.++ ++++ .+|..+ . +++ ++|+|++|+|+. +|+ .|.++++|++|+|++ .+.+|. .|.
T Consensus 13 ~v~C~~--------~~Lt-~iP~~l--~-~~l--~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~ 76 (350)
T 4ay9_X 13 VFLCQE--------SKVT-EIPSDL--P-RNA--IELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76 (350)
T ss_dssp EEEEES--------TTCC-SCCTTC--C-TTC--SEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred EEEecC--------CCCC-ccCcCc--C-CCC--CEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence 356677 7887 788755 3 678 999999999998 565 689999999999998 466765 468
Q ss_pred CCCCCCE-EEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCE
Q 038586 151 EYPTLFD-VEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFD 229 (353)
Q Consensus 151 ~L~~L~~-L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~ 229 (353)
++++++. +.+++|++++..|.. +..+.. ++++++++| .+++..+..+....++..
T Consensus 77 ~L~~l~~~l~~~~N~l~~l~~~~-------f~~l~~-L~~L~l~~n----------------~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 77 NLPKLHEIRIEKANNLLYINPEA-------FQNLPN-LQYLLISNT----------------GIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp SCTTCCEEEEEEETTCCEECTTS-------BCCCTT-CCEEEEEEE----------------CCSSCCCCTTCCBSSCEE
T ss_pred cchhhhhhhcccCCcccccCchh-------hhhccc-ccccccccc----------------ccccCCchhhcccchhhh
Confidence 8988775 667788998776777 777888 999999999 554444445566677889
Q ss_pred EEccc-CcCcccCCCCCccccchhhhhcccCC-CccceeecCC---CCCchhhcCCCCCCEEEccC-CCCCCCCcccccc
Q 038586 230 VERYS-SSLDQILESERTEDHGDAAIQNKQQE-AVEEEALLAQ---QNDPIELLCLDNILEIVESE-VEIDSLPDRLVFD 303 (353)
Q Consensus 230 L~Ls~-N~l~g~~p~~~~~~~~~~~~~~~~~l-~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~-N~l~~iP~~~~~~ 303 (353)
+++.+ +++....+ ..+. .+ ..++.|++++ ..+|.......+|+++++++ |.++.||+. .|.
T Consensus 133 l~l~~~~~i~~l~~----~~f~--------~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~ 199 (350)
T 4ay9_X 133 LDIQDNINIHTIER----NSFV--------GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFH 199 (350)
T ss_dssp EEEESCTTCCEECT----TSST--------TSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTT
T ss_pred hhhccccccccccc----cchh--------hcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH-Hhc
Confidence 99976 45655444 4444 44 4688999998 66787777778999999985 666999873 689
Q ss_pred cCcccchhccccC
Q 038586 304 VREFLSELDQIAE 316 (353)
Q Consensus 304 ~l~~L~~Ld~~~~ 316 (353)
.+++|+.||...+
T Consensus 200 ~l~~L~~LdLs~N 212 (350)
T 4ay9_X 200 GASGPVILDISRT 212 (350)
T ss_dssp TEECCSEEECTTS
T ss_pred cCcccchhhcCCC
Confidence 9999999986543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=8.3e-14 Score=126.49 Aligned_cols=159 Identities=9% Similarity=-0.047 Sum_probs=128.2
Q ss_pred HhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCC
Q 038586 102 LCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQ 179 (353)
Q Consensus 102 ~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~ 179 (353)
.+ .++ +.+++++|.+++ ++ .+..+++|++|++++ ...+| .+..+++|++|++++|++++..+
T Consensus 17 ~l-~~l--~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--------- 80 (263)
T 1xeu_A 17 GL-ANA--VKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--------- 80 (263)
T ss_dssp HH-HHH--HHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG---------
T ss_pred HH-HHH--HHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh---------
Confidence 34 566 888999999988 55 678999999999999 67777 68899999999999999985433
Q ss_pred cCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccC
Q 038586 180 NGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQ 259 (353)
Q Consensus 180 ~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 259 (353)
+..+.. ++.+++++|++++++ . +.. ++|++|++++|++++ ++ .++ .
T Consensus 81 l~~l~~-L~~L~L~~N~l~~l~-----------------~-~~~-~~L~~L~L~~N~l~~-~~-----~l~--------~ 126 (263)
T 1xeu_A 81 LKDLTK-LEELSVNRNRLKNLN-----------------G-IPS-ACLSRLFLDNNELRD-TD-----SLI--------H 126 (263)
T ss_dssp GTTCSS-CCEEECCSSCCSCCT-----------------T-CCC-SSCCEEECCSSCCSB-SG-----GGT--------T
T ss_pred hccCCC-CCEEECCCCccCCcC-----------------c-ccc-CcccEEEccCCccCC-Ch-----hhc--------C
Confidence 344556 899999999554443 1 122 789999999999986 34 467 8
Q ss_pred CCccceeecCC---CCCchhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhccc
Q 038586 260 EAVEEEALLAQ---QNDPIELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQI 314 (353)
Q Consensus 260 l~~L~~L~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~ 314 (353)
+++|+.|++++ ..+| .+..+++|++|++++|++..+ + .+..++.|+.|+..
T Consensus 127 l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~--~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 127 LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G--GLTRLKKVNWIDLT 180 (263)
T ss_dssp CTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T--TSTTCCCCCEEEEE
T ss_pred cccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H--HhccCCCCCEEeCC
Confidence 99999999999 5555 688899999999999999666 4 58888899888754
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.45 E-value=7.5e-14 Score=117.61 Aligned_cols=130 Identities=12% Similarity=0.095 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCCccccccCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~ 147 (353)
.+++.|++++ |.++ |.+|..+..+ ++| ++|++++|.+++ + ..+..+++|++|++++ . +.+|.
T Consensus 24 ~~L~~L~l~~--------n~l~~~~i~~~~~~l-~~L--~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~ 89 (168)
T 2ell_A 24 AAVRELVLDN--------CKSNDGKIEGLTAEF-VNL--EFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDM 89 (168)
T ss_dssp TSCSEEECCS--------CBCBTTBCSSCCGGG-GGC--CEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCH
T ss_pred ccCCEEECCC--------CCCChhhHHHHHHhC-CCC--CEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHH
Confidence 4799999999 8887 8899888899 999 999999999998 5 7789999999999999 3 34777
Q ss_pred CCCCCCCCCEEEccCcccceec-CccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCC---cchhc
Q 038586 148 SVPEYPTLFDVEGYMASLVQIL-EKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEME---HSLSE 223 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~l-p~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p---~~l~~ 223 (353)
.++++++|++|++++|.+++.- +.. +..+.. ++.+++++| .+++..+ ..+..
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~-------l~~l~~-L~~L~l~~N----------------~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEP-------LKKLEC-LKSLDLFNC----------------EVTNLNDYRESVFKL 145 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGG-------GSSCSC-CCEEECCSS----------------GGGTSTTHHHHHHTT
T ss_pred HHhhCCCCCEEeccCCccCcchhHHH-------HhcCCC-CCEEEeeCC----------------cCcchHHHHHHHHHh
Confidence 7777999999999999998521 133 556667 899999999 6664433 47889
Q ss_pred cCCCCEEEcccCcCcc
Q 038586 224 VYDIFDVERYSSSLDQ 239 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~g 239 (353)
+++|++|++++|.+..
T Consensus 146 l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 146 LPQLTYLDGYDREDQE 161 (168)
T ss_dssp CSSCCEETTEETTSCB
T ss_pred CccCcEecCCCCChhh
Confidence 9999999999999865
No 120
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=2.3e-15 Score=146.67 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCCccceeecCCCCC----chhhc----C-CCCCCEEEccCCCCC-----CCCcccccccCcccchhccccCC
Q 038586 259 QEAVEEEALLAQQND----PIELL----C-LDNILEIVESEVEID-----SLPDRLVFDVREFLSELDQIAEP 317 (353)
Q Consensus 259 ~l~~L~~L~L~~~~i----P~~l~----~-l~~L~~L~Ls~N~l~-----~iP~~~~~~~l~~L~~Ld~~~~~ 317 (353)
.+++|++|++++..+ +..+. . .++|++|++++|.++ .+|. .+..++.|++||...+.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA--TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCCCCCEEECCSSS
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH--HHHhCCCccEEECCCCC
Confidence 557777777776322 22222 1 567777777777774 5666 66667777777765443
No 121
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=1.1e-14 Score=141.97 Aligned_cols=202 Identities=12% Similarity=0.067 Sum_probs=123.6
Q ss_pred cEEEEEcCCCCCccccccCCccc----ccHHHHHhhccccccEEEeecCCCCCCCCCcccC-----CCCCCcEEeccC--
Q 038586 73 HFKVLNLRSSNDENARRKILKGT----ISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVG-----SLSKLSLNTVDH-- 141 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~----lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-----~L~~L~~L~Ls~-- 141 (353)
+++.|++++ |.+++. ++..+..+ ++| ++|++++|.++.. .+..+. ..++|++|++++
T Consensus 143 ~L~~L~L~~--------n~l~~~~~~~l~~~l~~~-~~L--~~L~L~~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~ 210 (461)
T 1z7x_W 143 RLEKLQLEY--------CSLSAASCEPLASVLRAK-PDF--KELTVSNNDINEA-GVRVLCQGLKDSPCQLEALKLESCG 210 (461)
T ss_dssp CCCEEECTT--------SCCBGGGHHHHHHHHHHC-TTC--CEEECCSSBCHHH-HHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred cceEEECCC--------CCCCHHHHHHHHHHHhhC-CCC--CEEECcCCCcchH-HHHHHHHHHhcCCCCceEEEccCCC
Confidence 578888888 666652 35556666 777 7777777776553 232222 245677777766
Q ss_pred CCC-----CCCCCCCCCCCCEEEccCcccce------------ecCccccccCCCcCCC--------------Cccccce
Q 038586 142 QGE-----IIHSVPEYPTLFDVEGYMASLVQ------------ILEKDQHDEGSQNGQQ--------------GAEAEAV 190 (353)
Q Consensus 142 ~~~-----lP~~l~~L~~L~~L~Ls~N~l~g------------~lp~~~~L~l~~~~~l--------------~~~l~~l 190 (353)
.+. ++..+..+++|++|++++|.+.+ ..+.+++|+++++... .. ++++
T Consensus 211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L 289 (461)
T 1z7x_W 211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKEL 289 (461)
T ss_dssp CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEE
T ss_pred CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-cceE
Confidence 222 34455566667777777766543 1355666666655322 22 5666
Q ss_pred eccCCcCCCCCC--------CCCCCcccc-----ceeee----CCcchhccCCCCEEEcccCcCcccCCCCCccccchhh
Q 038586 191 CIQHNQANDIPC--------SSNNNVQTV-----EFEGE----MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAA 253 (353)
Q Consensus 191 ~l~~N~l~~i~~--------~~~~~l~~~-----~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~ 253 (353)
++++|++.+... .....++.+ .+++. ++..+..+++|++|++++|++++..+ ..+...
T Consensus 290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~----~~l~~~- 364 (461)
T 1z7x_W 290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV----RELCQG- 364 (461)
T ss_dssp ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH----HHHHHH-
T ss_pred ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH----HHHHHH-
Confidence 666665542110 000122222 44432 56667788999999999999876443 333300
Q ss_pred hhcccCCCccceeecCC---C-----CCchhhcCCCCCCEEEccCCCCC
Q 038586 254 IQNKQQEAVEEEALLAQ---Q-----NDPIELLCLDNILEIVESEVEID 294 (353)
Q Consensus 254 ~~~~~~l~~L~~L~L~~---~-----~iP~~l~~l~~L~~L~Ls~N~l~ 294 (353)
+ ....++|+.|++++ + .+|..+..+++|++|++++|+++
T Consensus 365 l--~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 365 L--GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp H--TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred H--cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 0 01267999999999 2 56777888999999999999994
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=4.7e-13 Score=115.82 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=93.9
Q ss_pred cCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCC-CCCCCCCCCCEEEccCcccc
Q 038586 90 KILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEII-HSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 90 ~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP-~~l~~L~~L~~L~Ls~N~l~ 166 (353)
++++ .+|..+ . +.| ++|++++|.++. +|..|..+++|++|+|++ ...++ ..|.++++|++|+|++|+++
T Consensus 20 ~~l~-~ip~~~--~-~~l--~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 20 KGLK-VLPKGI--P-RDV--TELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp SCCS-SCCSCC--C-TTC--CEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCC-cCCCCC--C-CCC--CEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 6776 677543 2 678 999999999986 788899999999999998 55554 56889999999999999998
Q ss_pred eecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 167 QILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 167 g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
+..|.. +..+.. ++.|++++| .+++..+..|..+++|++|++++|++..
T Consensus 92 ~i~~~~-------f~~l~~-L~~L~L~~N----------------~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 92 CIPPRT-------FDGLKS-LRLLSLHGN----------------DISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp BCCTTT-------TTTCTT-CCEEECCSS----------------CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHH-------hCCCCC-CCEEECCCC----------------CCCeeChhhhhcCccccEEEeCCCCeec
Confidence 766666 666777 888888888 6664445567788889999999988754
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=8.6e-13 Score=114.19 Aligned_cols=124 Identities=6% Similarity=0.018 Sum_probs=85.1
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEA 187 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l 187 (353)
+++++++|.++. +|..+. ++|++|++++ ...+|..+.++++|++|++++|.+++..+.. +..+.. +
T Consensus 13 ~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~-------f~~l~~-L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKV--LPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQS-------FSNMTQ-L 80 (193)
T ss_dssp TEEECTTSCCSS--CCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTT-------TTTCTT-C
T ss_pred CEEEcCCCCCCc--CCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhH-------ccCCCC-C
Confidence 678888888886 676653 5788888887 6677777777888888888888777554444 555555 6
Q ss_pred cceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceee
Q 038586 188 EAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEAL 267 (353)
Q Consensus 188 ~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~ 267 (353)
++|++++| ++++..|..|..+++|++|+|++|++++..+ .
T Consensus 81 ~~L~Ls~N----------------~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~----~-------------------- 120 (193)
T 2wfh_A 81 LTLILSYN----------------RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE----G-------------------- 120 (193)
T ss_dssp CEEECCSS----------------CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT----T--------------------
T ss_pred CEEECCCC----------------ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh----h--------------------
Confidence 66666666 5554445556666666666666666654333 1
Q ss_pred cCCCCCchhhcCCCCCCEEEccCCCC
Q 038586 268 LAQQNDPIELLCLDNILEIVESEVEI 293 (353)
Q Consensus 268 L~~~~iP~~l~~l~~L~~L~Ls~N~l 293 (353)
.+..+++|+.|++++|.+
T Consensus 121 --------~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 121 --------AFNDLSALSHLAIGANPL 138 (193)
T ss_dssp --------TTTTCTTCCEEECCSSCE
T ss_pred --------hhhcCccccEEEeCCCCe
Confidence 345567888888888888
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=8.6e-14 Score=114.86 Aligned_cols=125 Identities=10% Similarity=0.105 Sum_probs=105.5
Q ss_pred CcEEEEEcCCCCCccccccCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--C-CCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--Q-GEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~-~~lP~ 147 (353)
.+++.|++++ +.++ |.+|..+..+ ++| ++|++++|.+++ + ..++.+++|++|++++ . +.+|.
T Consensus 17 ~~l~~L~l~~--------n~l~~~~~~~~~~~l-~~L--~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 17 SDVKELVLDN--------SRSNEGKLEGLTDEF-EEL--EFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp GGCSEEECTT--------CBCBTTBCCSCCTTC-TTC--CEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHH
T ss_pred ccCeEEEccC--------CcCChhHHHHHHhhc-CCC--cEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHH
Confidence 4789999999 8998 8899988899 999 999999999998 5 7789999999999999 4 44787
Q ss_pred CCCCCCCCCEEEccCccccee-cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCC---cchhc
Q 038586 148 SVPEYPTLFDVEGYMASLVQI-LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEME---HSLSE 223 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~-lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p---~~l~~ 223 (353)
.++.+++|++|++++|.+++. .+.. +..+.. ++++++++| .+++..+ ..+..
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~-------~~~l~~-L~~L~l~~N----------------~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEP-------LKKLEN-LKSLDLFNC----------------EVTNLNDYRENVFKL 138 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGG-------GGGCTT-CCEEECTTC----------------GGGGSTTHHHHHHHH
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHH-------HhhCCC-CCEEeCcCC----------------cccchHHHHHHHHHH
Confidence 777899999999999999862 3344 566677 899999999 6665544 57889
Q ss_pred cCCCCEEEccc
Q 038586 224 VYDIFDVERYS 234 (353)
Q Consensus 224 l~~L~~L~Ls~ 234 (353)
+++|++|++++
T Consensus 139 l~~L~~L~l~d 149 (149)
T 2je0_A 139 LPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEETTBC
T ss_pred CCCcccccCCC
Confidence 99999999874
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.2e-12 Score=131.49 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=81.0
Q ss_pred CcccccHHHHHhhccccccEEE-eecCCCCCCCCCc------ccCC--CCCCcEEeccC--CCCCCCCCCCCCCCCEEEc
Q 038586 92 LKGTISSALLLCLNCMIYDIWT-LVTINFGGIPVPE------FVGS--LSKLSLNTVDH--QGEIIHSVPEYPTLFDVEG 160 (353)
Q Consensus 92 l~g~lp~~l~~L~~~L~~~~L~-Ls~N~l~~~~~P~------~~~~--L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~L 160 (353)
..|.+|..+..+ ++| +.|+ ++.|.+.. ++. .+.. ...|++|+|++ ...+|. ++++++|++|+|
T Consensus 397 ~~~~~~~~l~~l-~~L--~~L~~l~~n~~~~--L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~L 470 (567)
T 1dce_A 397 PLLYEKETLQYF-STL--KAVDPMRAAYLDD--LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDL 470 (567)
T ss_dssp TGGGHHHHHHHH-HHH--HHHCGGGHHHHHH--HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEEC
T ss_pred cccCCHHHHHHH-Hhc--ccCcchhhcccch--hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeec
Confidence 556677666666 666 5555 34332221 111 0000 01356666666 444554 666666666666
Q ss_pred cCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCccc
Q 038586 161 YMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQI 240 (353)
Q Consensus 161 s~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ 240 (353)
++|.++ .+|.. ++.+.. ++.|++++| .+++ +| .++.+++|++|+|++|+|++.
T Consensus 471 s~N~l~-~lp~~-------~~~l~~-L~~L~Ls~N----------------~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~ 523 (567)
T 1dce_A 471 SHNRLR-ALPPA-------LAALRC-LEVLQASDN----------------ALEN-VD-GVANLPRLQELLLCNNRLQQS 523 (567)
T ss_dssp CSSCCC-CCCGG-------GGGCTT-CCEEECCSS----------------CCCC-CG-GGTTCSSCCEEECCSSCCCSS
T ss_pred Cccccc-ccchh-------hhcCCC-CCEEECCCC----------------CCCC-Cc-ccCCCCCCcEEECCCCCCCCC
Confidence 666665 55554 555555 666666666 4443 44 556666666666666666655
Q ss_pred C-CCCCccccchhhhhcccCCCccceeecCC---CCCchh----hcCCCCCCEEEc
Q 038586 241 L-ESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE----LLCLDNILEIVE 288 (353)
Q Consensus 241 ~-p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~----l~~l~~L~~L~L 288 (353)
. | ..++ .+++|+.|++++ ..+|+. +..+++|+.|++
T Consensus 524 ~~p----~~l~--------~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 524 AAI----QPLV--------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp STT----GGGG--------GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc----HHHh--------cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 4 5 5555 566666666665 222221 233566776653
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=2.8e-15 Score=130.20 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=95.8
Q ss_pred cEEEEEcCCCCCccccccCCcccccH------HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISS------ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGE 144 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~------~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~ 144 (353)
+++.++++. +.+.|.+|+ .+..+ ++| ++|++++|.+++ +| .+..+++|++|++++ ...
T Consensus 19 ~l~~l~l~~--------~~l~~~~~~l~~l~~~~~~l-~~L--~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~ 84 (198)
T 1ds9_A 19 SVVATEAEK--------VELHGMIPPIEKMDATLSTL-KAC--KHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKK 84 (198)
T ss_dssp CCCCTTCSE--------EECCBCCTTCCCCHHHHHHT-TTC--SEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECS
T ss_pred cccCcchhe--------eEeccccCcHhhhhHHHhcC-CCC--CEEECCCCCCcc--cc-ccccCCCCCEEECCCCCccc
Confidence 455555555 566666554 88888 999 999999999988 67 788889999999988 667
Q ss_pred CCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeC-Ccchhc
Q 038586 145 IIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEM-EHSLSE 223 (353)
Q Consensus 145 lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~-p~~l~~ 223 (353)
+|..+..+++|++|++++|++++ +|. +..+.. ++.+++++| ++++.. +..+..
T Consensus 85 l~~~~~~~~~L~~L~L~~N~l~~-l~~--------~~~l~~-L~~L~l~~N----------------~i~~~~~~~~l~~ 138 (198)
T 1ds9_A 85 IENLDAVADTLEELWISYNQIAS-LSG--------IEKLVN-LRVLYMSNN----------------KITNWGEIDKLAA 138 (198)
T ss_dssp CSSHHHHHHHCSEEEEEEEECCC-HHH--------HHHHHH-SSEEEESEE----------------ECCCHHHHHHHTT
T ss_pred ccchhhcCCcCCEEECcCCcCCc-CCc--------cccCCC-CCEEECCCC----------------cCCchhHHHHHhc
Confidence 88777777889999999988874 442 334445 777888888 444311 146777
Q ss_pred cCCCCEEEcccCcCcccCC
Q 038586 224 VYDIFDVERYSSSLDQILE 242 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~g~~p 242 (353)
+++|++|++++|++.+..|
T Consensus 139 l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 139 LDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp TTTCSEEEECSCHHHHHHH
T ss_pred CCCCCEEEecCCccccccc
Confidence 8888888888888876655
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=1.6e-11 Score=104.18 Aligned_cols=128 Identities=9% Similarity=0.037 Sum_probs=79.4
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCcc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAE 186 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~ 186 (353)
+.+++++|.++. +|..+. ++|++|++++ ...+|+ .++++++|++|++++|++++..+.. +..+..
T Consensus 10 ~~l~~~~~~l~~--~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~- 77 (177)
T 2o6r_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-------FDKLTK- 77 (177)
T ss_dssp TEEECCSSCCSS--CCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------TTTCTT-
T ss_pred CEEEecCCCCcc--CCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH-------ccCCCc-
Confidence 778888888887 665443 6778888877 445554 3567777777777777776433333 334444
Q ss_pred ccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCcccee
Q 038586 187 AEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEA 266 (353)
Q Consensus 187 l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L 266 (353)
++++++++| ++++..+..+..+++|++|++++|++++..+
T Consensus 78 L~~L~l~~N----------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~------------------------ 117 (177)
T 2o6r_A 78 LTILYLHEN----------------KLQSLPNGVFDKLTQLKELALDTNQLKSVPD------------------------ 117 (177)
T ss_dssp CCEEECCSS----------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT------------------------
T ss_pred cCEEECCCC----------------CccccCHHHhhCCcccCEEECcCCcceEeCH------------------------
Confidence 555555555 4443333444555555555555555543222
Q ss_pred ecCCCCCchhhcCCCCCCEEEccCCCC-CCCC
Q 038586 267 LLAQQNDPIELLCLDNILEIVESEVEI-DSLP 297 (353)
Q Consensus 267 ~L~~~~iP~~l~~l~~L~~L~Ls~N~l-~~iP 297 (353)
..+..+++|++|++++|.+ +..|
T Consensus 118 --------~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 118 --------GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp --------TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --------HHhcCCcccCEEEecCCCeeccCc
Confidence 1245578899999999999 5544
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=2.6e-12 Score=109.12 Aligned_cols=54 Identities=11% Similarity=-0.058 Sum_probs=29.2
Q ss_pred CCCccceeecCC---CCCch--hhcCCCCCCEEEccCCCCCCCCcccc----cccCcccchhccc
Q 038586 259 QEAVEEEALLAQ---QNDPI--ELLCLDNILEIVESEVEIDSLPDRLV----FDVREFLSELDQI 314 (353)
Q Consensus 259 ~l~~L~~L~L~~---~~iP~--~l~~l~~L~~L~Ls~N~l~~iP~~~~----~~~l~~L~~Ld~~ 314 (353)
.+++|+.|++++ +.+|. .+..+++|+.|++++|.+..+|. . +..++.|+.||..
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~--~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH--YRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT--HHHHHHHHCTTCSEETTE
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHh--HHHHHHHHCCccceeCCC
Confidence 344444444444 33333 45556666666666666655555 3 5556666666543
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=1.1e-11 Score=105.22 Aligned_cols=107 Identities=8% Similarity=0.022 Sum_probs=62.4
Q ss_pred HHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCccccccCC
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGS 178 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~ 178 (353)
..+ .+| ++|++++|.++. +|......++|++|++++ ...+ ..++.+++|++|++++|.+++..|..
T Consensus 16 ~~~-~~L--~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~------ 83 (176)
T 1a9n_A 16 TNA-VRD--RELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL------ 83 (176)
T ss_dssp ECT-TSC--EEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH------
T ss_pred CCc-CCc--eEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch------
Confidence 445 677 888888888875 554333333777777777 4444 45666777777777777766432222
Q ss_pred CcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCc--chhccCCCCEEEcccCcCc
Q 038586 179 QNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEH--SLSEVYDIFDVERYSSSLD 238 (353)
Q Consensus 179 ~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~--~l~~l~~L~~L~Ls~N~l~ 238 (353)
+..+.. ++++++++| .++ .+|. .+..+++|++|++++|++.
T Consensus 84 -~~~l~~-L~~L~L~~N----------------~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 84 -DQALPD-LTELILTNN----------------SLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp -HHHCTT-CCEEECCSC----------------CCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred -hhcCCC-CCEEECCCC----------------cCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 234444 556666666 332 2333 4555566666666666554
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=2.9e-14 Score=123.65 Aligned_cols=148 Identities=11% Similarity=0.111 Sum_probs=85.7
Q ss_pred HHHhhccccccEEEeecCCCCCCCCCc------ccCCCCCCcEEeccC--CCCCCCCCCCCCCCCEEEccCcccceecCc
Q 038586 100 LLLCLNCMIYDIWTLVTINFGGIPVPE------FVGSLSKLSLNTVDH--QGEIIHSVPEYPTLFDVEGYMASLVQILEK 171 (353)
Q Consensus 100 l~~L~~~L~~~~L~Ls~N~l~~~~~P~------~~~~L~~L~~L~Ls~--~~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~ 171 (353)
+... ..+ +.++++.+.+.+. +|. .+..+++|++|++++ ...+| .+.++++|++|++++|.++ .+|.
T Consensus 14 ~~~~-~~l--~~l~l~~~~l~~~-~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~ 87 (198)
T 1ds9_A 14 FEER-KSV--VATEAEKVELHGM-IPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIEN 87 (198)
T ss_dssp HHHT-TCC--CCTTCSEEECCBC-CTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSS
T ss_pred HHhc-ccc--cCcchheeEeccc-cCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccc
Confidence 5666 778 8888888888887 666 566666666666666 44455 5666666666666666655 3443
Q ss_pred cccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccch
Q 038586 172 DQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGD 251 (353)
Q Consensus 172 ~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~ 251 (353)
. ...+.. ++++++++| ++++ +| .+..+++|++|++++|++++
T Consensus 88 ~-------~~~~~~-L~~L~L~~N----------------~l~~-l~-~~~~l~~L~~L~l~~N~i~~------------ 129 (198)
T 1ds9_A 88 L-------DAVADT-LEELWISYN----------------QIAS-LS-GIEKLVNLRVLYMSNNKITN------------ 129 (198)
T ss_dssp H-------HHHHHH-CSEEEEEEE----------------ECCC-HH-HHHHHHHSSEEEESEEECCC------------
T ss_pred h-------hhcCCc-CCEEECcCC----------------cCCc-CC-ccccCCCCCEEECCCCcCCc------------
Confidence 3 222233 455555555 3332 22 34445555555555555432
Q ss_pred hhhhcccCCCccceeecCCCCCch--hhcCCCCCCEEEccCCCC-CCCCcc--------cccccCcccchhc
Q 038586 252 AAIQNKQQEAVEEEALLAQQNDPI--ELLCLDNILEIVESEVEI-DSLPDR--------LVFDVREFLSELD 312 (353)
Q Consensus 252 ~~~~~~~~l~~L~~L~L~~~~iP~--~l~~l~~L~~L~Ls~N~l-~~iP~~--------~~~~~l~~L~~Ld 312 (353)
+|. .+..+++|++|++++|.+ +.+|.. ..+..++.|+.||
T Consensus 130 ---------------------~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 130 ---------------------WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ---------------------HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ---------------------hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 222 456677777777777777 443330 0255566666665
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.24 E-value=4.4e-11 Score=101.14 Aligned_cols=77 Identities=12% Similarity=0.139 Sum_probs=49.0
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~ 151 (353)
+.+++++ +.++ .+|..+ . +.| ++|+|++|.+++. .|..|.++++|++|+|++ ...+|+. +.+
T Consensus 12 ~~l~~s~--------n~l~-~ip~~~--~-~~l--~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 12 TTVDCSG--------KSLA-SVPTGI--P-TTT--QVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TEEECTT--------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CEEEeCC--------CCcC-ccCccC--C-CCC--cEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 4677777 7776 466543 3 667 8888888888775 566666666666666666 4444443 355
Q ss_pred CCCCCEEEccCcccc
Q 038586 152 YPTLFDVEGYMASLV 166 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~ 166 (353)
+++|++|+|++|+++
T Consensus 77 l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 77 LTQLTQLSLNDNQLK 91 (170)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCCCEEECCCCccC
Confidence 666666666666554
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.21 E-value=1.7e-11 Score=114.49 Aligned_cols=190 Identities=8% Similarity=0.022 Sum_probs=109.7
Q ss_pred HHHH-hhccccccEEEeecCCCCC------C------------CCC-cccCC--------CCCCcEEeccC-CCCCCC-C
Q 038586 99 ALLL-CLNCMIYDIWTLVTINFGG------I------------PVP-EFVGS--------LSKLSLNTVDH-QGEIIH-S 148 (353)
Q Consensus 99 ~l~~-L~~~L~~~~L~Ls~N~l~~------~------------~~P-~~~~~--------L~~L~~L~Ls~-~~~lP~-~ 148 (353)
.+.. + ++| ++|||++|.+.. . .+| ..|.+ +++|+.|+|.. ...|+. .
T Consensus 43 ~l~~~l-~~L--~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~a 119 (329)
T 3sb4_A 43 HLRDEF-PSL--KVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAA 119 (329)
T ss_dssp HHHHSC-TTC--CEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCTTCCEECTTT
T ss_pred HHHHhh-ccC--eEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCccccchhHHH
Confidence 3444 5 779 999999999881 1 022 24667 99999999998 666765 5
Q ss_pred CCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCc----CCCCC---CC------------------
Q 038586 149 VPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQ----ANDIP---CS------------------ 203 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~----l~~i~---~~------------------ 203 (353)
|.++++|+.+++++|.+...-+.. +..... +..+....+. ...+. ..
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~a-------F~~~~~-l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~ 191 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEA-------LADSVT-AIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE 191 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTS-------SCTTTC-EEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred hhcCcccceEEcCCCCccccchhh-------hcCCCc-eEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence 889999999999999876322222 221111 1122111100 00000 00
Q ss_pred --------CCCCccccceeeeCCc----ch-hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC
Q 038586 204 --------SNNNVQTVEFEGEMEH----SL-SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ 270 (353)
Q Consensus 204 --------~~~~l~~~~l~g~~p~----~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 270 (353)
...++..+.+.|.+-. .+ ..+++|+.+++++|+++...+ ..|. ++.+|+.+++.+
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~aF~--------~~~~L~~l~l~~ 259 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD----FTFA--------QKKYLLKIKLPH 259 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT----TTTT--------TCTTCCEEECCT
T ss_pred HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH----hhhh--------CCCCCCEEECCc
Confidence 0011112222232211 11 126778888888777765444 5566 777777777776
Q ss_pred --CCCch-hhcCCCCCC-EEEccCCCCCCCCcccccccCcccchhcc
Q 038586 271 --QNDPI-ELLCLDNIL-EIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 271 --~~iP~-~l~~l~~L~-~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
..|+. .|.++++|+ .+++.+ .+..|++. .|..++.|+.++.
T Consensus 260 ni~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~-aF~~c~~L~~l~l 304 (329)
T 3sb4_A 260 NLKTIGQRVFSNCGRLAGTLELPA-SVTAIEFG-AFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEECTTTTTTCTTCCEEEEECT-TCCEECTT-TTTTCTTEEEEEE
T ss_pred ccceehHHHhhCChhccEEEEEcc-cceEEchh-hhhCCccCCEEEe
Confidence 44443 466777777 777777 66666542 6777777777763
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=1e-10 Score=99.30 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=57.1
Q ss_pred EEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCC-CCC
Q 038586 75 KVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHS-VPE 151 (353)
Q Consensus 75 ~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~-l~~ 151 (353)
+.+++++ ++++ .+|..+ . ++| ++|+|++|.+++. .|..|.++++|++|+|++ ...+|.. +.+
T Consensus 15 ~~l~~~~--------n~l~-~iP~~~--~-~~L--~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQN--------IRLA-SVPAGI--P-TDK--QRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCS--------SCCS-SCCSCC--C-TTC--SEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEEeCC--------CCCC-ccCCCc--C-CCC--cEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 5688888 7775 777654 3 778 9999999999886 577777777787777777 5556654 467
Q ss_pred CCCCCEEEccCcccc
Q 038586 152 YPTLFDVEGYMASLV 166 (353)
Q Consensus 152 L~~L~~L~Ls~N~l~ 166 (353)
+++|++|+|++|+++
T Consensus 80 l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLK 94 (174)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred cchhhEEECCCCccc
Confidence 777777777777665
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.15 E-value=1.5e-12 Score=130.66 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=34.7
Q ss_pred HhhccccccEEEeecCCCCCCCCCcccCCC--CCCcEEeccC-CC----CCCCCCCCCCCCCEEEccCcccc
Q 038586 102 LCLNCMIYDIWTLVTINFGGIPVPEFVGSL--SKLSLNTVDH-QG----EIIHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 102 ~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L--~~L~~L~Ls~-~~----~lP~~l~~L~~L~~L~Ls~N~l~ 166 (353)
.+ ++| ++|+|++|.+++. .+..+... ++|++|+|++ .+ .++....++++|++|++++|.++
T Consensus 110 ~~-~~L--~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 177 (592)
T 3ogk_B 110 NL-RQL--KSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177 (592)
T ss_dssp HC-TTC--CEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE
T ss_pred hC-CCC--CeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc
Confidence 55 677 7777777766654 44444442 3377777765 21 12222235667777777777654
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=3.4e-10 Score=96.08 Aligned_cols=75 Identities=11% Similarity=-0.016 Sum_probs=47.2
Q ss_pred ceeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC---CCCchh-hcCCCCCCEEE
Q 038586 212 EFEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ---QNDPIE-LLCLDNILEIV 287 (353)
Q Consensus 212 ~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~---~~iP~~-l~~l~~L~~L~ 287 (353)
++++..|..|.++++|++|+|++|+|++..+ ..++ .+++|+.|++++ ..+|.. +..+++|++|+
T Consensus 44 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~--------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 44 QITKLEPGVFDHLVNLQQLYFNSNKLTAIPT----GVFD--------KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----TTTT--------TCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CccccCHHHhcCCcCCCEEECCCCCCCccCh----hHhC--------CcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 4444445556666666666666666665444 3344 556666666665 344443 66788899999
Q ss_pred ccCCCCCCCCc
Q 038586 288 ESEVEIDSLPD 298 (353)
Q Consensus 288 Ls~N~l~~iP~ 298 (353)
|++|.+...|.
T Consensus 112 L~~N~~~c~~~ 122 (174)
T 2r9u_A 112 LYNNPWDCECR 122 (174)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCcccccc
Confidence 99999866665
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=6.5e-10 Score=93.86 Aligned_cols=53 Identities=8% Similarity=-0.027 Sum_probs=29.9
Q ss_pred cEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC-CCCCCCCCCCCEEEccCcccc
Q 038586 110 DIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI-IHSVPEYPTLFDVEGYMASLV 166 (353)
Q Consensus 110 ~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l-P~~l~~L~~L~~L~Ls~N~l~ 166 (353)
+++++++|.++. +|..+. ++|++|+|++ ...+ |..++++++|++|+|++|+++
T Consensus 12 ~~l~~s~n~l~~--ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 67 (170)
T 3g39_A 12 TTVDCSGKSLAS--VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67 (170)
T ss_dssp TEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CEEEeCCCCcCc--cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC
Confidence 666777777766 565442 5556666655 2233 444555555555555555555
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=2.4e-10 Score=107.25 Aligned_cols=105 Identities=11% Similarity=0.047 Sum_probs=68.5
Q ss_pred ccccceEecCCCCcEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeec-CCCCCCCCCcccCCCCCCcEEe
Q 038586 60 CKWRGVCCNNTTSHFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVT-INFGGIPVPEFVGSLSKLSLNT 138 (353)
Q Consensus 60 C~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~-N~l~~~~~P~~~~~L~~L~~L~ 138 (353)
|.|.+|.|.+. |+++ .+|. +..+ ++| ++|+|++ |.|++. .|..|+++++|++|+
T Consensus 8 C~~~~v~~~~~-------------------n~l~-~ip~-l~~~-~~L--~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~ 62 (347)
T 2ifg_A 8 HGSSGLRCTRD-------------------GALD-SLHH-LPGA-ENL--TELYIENQQHLQHL-ELRDLRGLGELRNLT 62 (347)
T ss_dssp SSSSCEECCSS-------------------CCCT-TTTT-SCSC-SCC--SEEECCSCSSCCEE-CGGGSCSCCCCSEEE
T ss_pred ccCCEEEcCCC-------------------CCCC-ccCC-CCCC-CCe--eEEEccCCCCCCCc-ChhHhccccCCCEEE
Confidence 78888887531 2565 4777 7777 777 8888875 777774 445677788888888
Q ss_pred ccC--CC-CCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCC
Q 038586 139 VDH--QG-EIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQAN 198 (353)
Q Consensus 139 Ls~--~~-~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~ 198 (353)
|++ .. ..|..|++|++|++|+|++|+|++..+.. +..+. ++.|++.+|.+.
T Consensus 63 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------~~~~~--L~~l~l~~N~~~ 116 (347)
T 2ifg_A 63 IVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT-------VQGLS--LQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT-------TCSCC--CCEEECCSSCCC
T ss_pred CCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH-------cccCC--ceEEEeeCCCcc
Confidence 877 33 33445677888888888888877433333 22222 566666666443
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.04 E-value=2.5e-11 Score=121.79 Aligned_cols=192 Identities=9% Similarity=-0.071 Sum_probs=102.8
Q ss_pred ccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC------CCCCCCCCCCCCCCCEEEccCcccceec
Q 038586 96 ISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH------QGEIIHSVPEYPTLFDVEGYMASLVQIL 169 (353)
Q Consensus 96 lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~------~~~lP~~l~~L~~L~~L~Ls~N~l~g~l 169 (353)
++..+.++ ++| ++|++++|.+.+ +|..+..+++|++|+++. .+..+..+..+++|+.|+++++. .+.+
T Consensus 212 l~~~~~~~-~~L--~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l 285 (592)
T 3ogk_B 212 LETIARNC-RSL--VSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM 285 (592)
T ss_dssp HHHHHHHC-TTC--CEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTG
T ss_pred HHHHHhhC-CCC--cEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHH
Confidence 33334445 555 555555555554 455555555566555553 12333445556666666665532 1233
Q ss_pred CccccccCCCcCCCCccccceeccCCcCCCCC----CCCCCCccccceee-----eCCcchhccCCCCEEEccc------
Q 038586 170 EKDQHDEGSQNGQQGAEAEAVCIQHNQANDIP----CSSNNNVQTVEFEG-----EMEHSLSEVYDIFDVERYS------ 234 (353)
Q Consensus 170 p~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~----~~~~~~l~~~~l~g-----~~p~~l~~l~~L~~L~Ls~------ 234 (353)
|.. ...+.. ++++++++|.+++.. .....+++.+.+.. .++.....+++|++|++++
T Consensus 286 ~~~-------~~~~~~-L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~ 357 (592)
T 3ogk_B 286 PIL-------FPFAAQ-IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357 (592)
T ss_dssp GGG-------GGGGGG-CCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSST
T ss_pred HHH-------HhhcCC-CcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccc
Confidence 332 233344 677777777543211 12334444444432 2333345678888888883
Q ss_pred -----CcCccc-CCCCCccccchhhhhcccCCCccceeecCCCCC----chhhcC-CCCCCEEEcc----CCCCCCCCcc
Q 038586 235 -----SSLDQI-LESERTEDHGDAAIQNKQQEAVEEEALLAQQND----PIELLC-LDNILEIVES----EVEIDSLPDR 299 (353)
Q Consensus 235 -----N~l~g~-~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i----P~~l~~-l~~L~~L~Ls----~N~l~~iP~~ 299 (353)
|.+++. ++ .... .+++|++|+++...+ +..++. +++|++|+++ .|.++..|..
T Consensus 358 ~~~~~~~~~~~~~~----~l~~--------~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 358 MEDEEGLVSQRGLI----ALAQ--------GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp TSSTTCCCCHHHHH----HHHH--------HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred cccccCccCHHHHH----HHHh--------hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 444321 11 1122 578889998855333 334444 8889999996 6677554321
Q ss_pred ----cccccCcccchhcc
Q 038586 300 ----LVFDVREFLSELDQ 313 (353)
Q Consensus 300 ----~~~~~l~~L~~Ld~ 313 (353)
..+..++.|+.|+.
T Consensus 426 ~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp HHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHhCCCCCEEEE
Confidence 03566777887775
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=1.9e-09 Score=101.04 Aligned_cols=102 Identities=6% Similarity=-0.015 Sum_probs=83.9
Q ss_pred cEEEeecC-CCCCCCCCcccCCCCCCcEEecc--C-CCCCC-CCCCCCCCCCEEEccCcccceecCccccccCCCcCCCC
Q 038586 110 DIWTLVTI-NFGGIPVPEFVGSLSKLSLNTVD--H-QGEII-HSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQG 184 (353)
Q Consensus 110 ~~L~Ls~N-~l~~~~~P~~~~~L~~L~~L~Ls--~-~~~lP-~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~ 184 (353)
..++++++ +++. +|. +..+++|++|+|+ + ...+| ..|++|++|++|+|++|++++..|.. +..+.
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-------~~~l~ 80 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-------FHFTP 80 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-------GGSCS
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH-------hcCCc
Confidence 45688988 8988 899 9999999999997 3 66666 56999999999999999999988887 78888
Q ss_pred ccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCCCEEEcccCcCcc
Q 038586 185 AEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDIFDVERYSSSLDQ 239 (353)
Q Consensus 185 ~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 239 (353)
. |+.|+|++| +|++..+..+..++ |++|+|.+|++..
T Consensus 81 ~-L~~L~l~~N----------------~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 81 R-LSRLNLSFN----------------ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp C-CCEEECCSS----------------CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred C-CCEEeCCCC----------------ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8 999999999 55543344455555 9999999999864
No 140
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.86 E-value=3.6e-11 Score=120.55 Aligned_cols=52 Identities=13% Similarity=-0.061 Sum_probs=32.2
Q ss_pred CCCccceeecCCCCCc-----hhhcCCCCCCEEEccCCCC--CCCCcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQQNDP-----IELLCLDNILEIVESEVEI--DSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~~~iP-----~~l~~l~~L~~L~Ls~N~l--~~iP~~~~~~~l~~L~~Ld~ 313 (353)
.+++|++|++++..+. ..+..+++|++|++++| + ..++. ....++.|++|+.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~--l~~~~~~L~~L~L 345 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV--LASTCKDLRELRV 345 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH--HHHHCTTCCEEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH--HHHhCCCCCEEEE
Confidence 5677888888773332 22456788888888877 4 23333 3344666777754
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=6e-10 Score=106.11 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=37.4
Q ss_pred CcchhccCCCCEEEcccCcCccc----CCCCCccccchhhhhcccCCCccceeecCCCCC--------chhhcCCCCCCE
Q 038586 218 EHSLSEVYDIFDVERYSSSLDQI----LESERTEDHGDAAIQNKQQEAVEEEALLAQQND--------PIELLCLDNILE 285 (353)
Q Consensus 218 p~~l~~l~~L~~L~Ls~N~l~g~----~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i--------P~~l~~l~~L~~ 285 (353)
+..+...++|++|+|++|.++.. ++ ..+. ..++|+.|+|++..+ +..+...++|++
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~----~~L~--------~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~ 243 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLA----AQLD--------RNRQLQELNVAYNGAGDTAALALARAAREHPSLEL 243 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHH----HHGG--------GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHH----HHHh--------cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCE
Confidence 33445556666666666665421 11 2222 445666666666222 234555678888
Q ss_pred EEccCCCCCC
Q 038586 286 IVESEVEIDS 295 (353)
Q Consensus 286 L~Ls~N~l~~ 295 (353)
|+|++|.|+.
T Consensus 244 L~Ls~N~i~~ 253 (372)
T 3un9_A 244 LHLYFNELSS 253 (372)
T ss_dssp EECTTSSCCH
T ss_pred EeccCCCCCH
Confidence 8888888843
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.65 E-value=1.3e-09 Score=109.17 Aligned_cols=205 Identities=8% Similarity=0.010 Sum_probs=108.5
Q ss_pred HHhhccccccEEEeecCCCCCCCCCcccC-CCCCCcEEeccC---CCC--CCCCCCCCCCCCEEEccCcccceecCcccc
Q 038586 101 LLCLNCMIYDIWTLVTINFGGIPVPEFVG-SLSKLSLNTVDH---QGE--IIHSVPEYPTLFDVEGYMASLVQILEKDQH 174 (353)
Q Consensus 101 ~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~-~L~~L~~L~Ls~---~~~--lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~ 174 (353)
..+ ++| ++|+|++|.+++. .+..+. .+++|++|+|++ .+. ++..+.++++|++|++++|.+++.-+..
T Consensus 102 ~~~-~~L--~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~-- 175 (594)
T 2p1m_B 102 SSY-TWL--EEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW-- 175 (594)
T ss_dssp HHC-TTC--CEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG--
T ss_pred HhC-CCC--CeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH--
Confidence 355 778 8888888887765 455554 578888888876 111 3333446788888888888765422111
Q ss_pred ccCCC-cCCCCccccceeccCCcCCCCCC-------CCCCCccccce-----eeeCCcchhccCCCCEEEcccCc-----
Q 038586 175 DEGSQ-NGQQGAEAEAVCIQHNQANDIPC-------SSNNNVQTVEF-----EGEMEHSLSEVYDIFDVERYSSS----- 236 (353)
Q Consensus 175 L~l~~-~~~l~~~l~~l~l~~N~l~~i~~-------~~~~~l~~~~l-----~g~~p~~l~~l~~L~~L~Ls~N~----- 236 (353)
+.. ...... ++.+++++|. ..+.. ...+.++.+.+ .+.+|..+..+++|++|+++.+.
T Consensus 176 --l~~~~~~~~~-L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 176 --LSHFPDTYTS-LVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp --GGGSCTTCCC-CCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred --HHHHhhcCCc-CcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 000 112223 5555555552 00100 00011111111 11144445555555555544332
Q ss_pred --CcccCCCCCccccchhhhhcccCCCcccee-ecCC---CCCchhhcCCCCCCEEEccCCCCC--CCCcccccccCccc
Q 038586 237 --LDQILESERTEDHGDAAIQNKQQEAVEEEA-LLAQ---QNDPIELLCLDNILEIVESEVEID--SLPDRLVFDVREFL 308 (353)
Q Consensus 237 --l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L-~L~~---~~iP~~l~~l~~L~~L~Ls~N~l~--~iP~~~~~~~l~~L 308 (353)
+.+ ++ ..++ ++++|+.+ .+.. ..+|..+..+++|++|++++|.++ .++. .+..+++|
T Consensus 252 ~~~~~-l~----~~l~--------~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~--~~~~~~~L 316 (594)
T 2p1m_B 252 DVYSG-LS----VALS--------GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK--LLCQCPKL 316 (594)
T ss_dssp HHHHH-HH----HHHH--------TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHH--HHTTCTTC
T ss_pred hhHHH-HH----HHHh--------cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHH--HHhcCCCc
Confidence 111 11 1233 56667766 3333 445655667899999999999983 2333 45677888
Q ss_pred chhccccCCC-------cccccccccccc
Q 038586 309 SELDQIAEPR-------DEECGKLQAVAW 330 (353)
Q Consensus 309 ~~Ld~~~~~~-------~~~c~~l~~~~~ 330 (353)
+.|+...... ...|.+++.+..
T Consensus 317 ~~L~l~~~~~~~~l~~l~~~~~~L~~L~L 345 (594)
T 2p1m_B 317 QRLWVLDYIEDAGLEVLASTCKDLRELRV 345 (594)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred CEEeCcCccCHHHHHHHHHhCCCCCEEEE
Confidence 8887643311 123666666643
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=8.2e-08 Score=89.37 Aligned_cols=174 Identities=9% Similarity=-0.007 Sum_probs=125.1
Q ss_pred hhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCC-CCCCCCCCCEEEccCcccce---ecC------
Q 038586 103 CLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIH-SVPEYPTLFDVEGYMASLVQ---ILE------ 170 (353)
Q Consensus 103 L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~-~l~~L~~L~~L~Ls~N~l~g---~lp------ 170 (353)
+ ++| +.++|.+ .++.. -+..|.++++|+.++++. ...+++ .|..+.++.++....+.... .+.
T Consensus 100 ~-~~L--~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 100 K-QTL--EKVILSE-KIKNI-EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp C-TTC--CC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred c-CCC--cEEECCc-cccch-hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 8 999 9999999 88874 455699999999999988 445554 56777777777765532100 000
Q ss_pred ----------------------------ccccccCCCcC----------CCCccccceeccCCcCCCCCCCCCCCccccc
Q 038586 171 ----------------------------KDQHDEGSQNG----------QQGAEAEAVCIQHNQANDIPCSSNNNVQTVE 212 (353)
Q Consensus 171 ----------------------------~~~~L~l~~~~----------~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~ 212 (353)
..+.+.+.+.- .... ++.+++++| +
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~-L~~l~L~~n----------------~ 237 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPN-LVSLDISKT----------------N 237 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTT-CCEEECTTB----------------C
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCC-CeEEECCCC----------------C
Confidence 00111111100 1344 888999998 5
Q ss_pred eeeeCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccc-eeecCC--CCCc-hhhcCCCCCCEEEc
Q 038586 213 FEGEMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEE-EALLAQ--QNDP-IELLCLDNILEIVE 288 (353)
Q Consensus 213 l~g~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~-~L~L~~--~~iP-~~l~~l~~L~~L~L 288 (353)
++..-+..|.++++|+.+++.+| +...-+ ..|. ++.+|+ .+++.. ..|+ ..|.++++|+.+++
T Consensus 238 i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~----~aF~--------~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 238 ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ----RVFS--------NCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECT----TTTT--------TCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEE
T ss_pred cceecHhhhhCCCCCCEEECCcc-cceehH----HHhh--------CChhccEEEEEcccceEEchhhhhCCccCCEEEe
Confidence 65444567999999999999998 765555 6677 899999 999987 4554 56889999999999
Q ss_pred cCCCCCCCCcccccccCcccchhc
Q 038586 289 SEVEIDSLPDRLVFDVREFLSELD 312 (353)
Q Consensus 289 s~N~l~~iP~~~~~~~l~~L~~Ld 312 (353)
++|++..|++. .|.++++|+.+.
T Consensus 305 ~~n~i~~I~~~-aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDE-LFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTT-TTCTTCCCCEEE
T ss_pred CCCccCccchh-hhcCCcchhhhc
Confidence 99999888774 799999888764
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.52 E-value=4.3e-07 Score=87.15 Aligned_cols=186 Identities=10% Similarity=0.034 Sum_probs=105.5
Q ss_pred cEEEEEcCCCCCccccccCCccccc-HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCC-CC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTIS-SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIH-SV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp-~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~-~l 149 (353)
.++.+.+.. .+. .|+ .+|..+ .+| +.++++.|.++. +|...-..++|+.+.+.. ...|+. .|
T Consensus 158 ~L~~i~lp~---------~l~-~I~~~aF~~c-~~L--~~l~l~~n~l~~--I~~~aF~~~~L~~l~lp~~l~~I~~~aF 222 (401)
T 4fdw_A 158 TVQEIVFPS---------TLE-QLKEDIFYYC-YNL--KKADLSKTKITK--LPASTFVYAGIEEVLLPVTLKEIGSQAF 222 (401)
T ss_dssp CCCEEECCT---------TCC-EECSSTTTTC-TTC--CEEECTTSCCSE--ECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred CceEEEeCC---------Ccc-EehHHHhhCc-ccC--CeeecCCCcceE--echhhEeecccCEEEeCCchheehhhHh
Confidence 467777765 444 444 467788 999 999999999988 555433368999999987 666654 57
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCC---CCCCccccceee----------e
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCS---SNNNVQTVEFEG----------E 216 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~---~~~~l~~~~l~g----------~ 216 (353)
.++++|+.+++..| ++ .++.. .+.. .. ++.+.+..+ ++.|+.. .+..++.+.+.+ .
T Consensus 223 ~~~~~L~~l~l~~~-l~-~I~~~------aF~~-~~-L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 223 LKTSQLKTIEIPEN-VS-TIGQE------AFRE-SG-ITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp TTCTTCCCEECCTT-CC-EECTT------TTTT-CC-CSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred hCCCCCCEEecCCC-cc-Ccccc------cccc-CC-ccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 78999999999865 33 22211 1222 22 566666333 3333211 122233332222 1
Q ss_pred CCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCC
Q 038586 217 MEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEI 293 (353)
Q Consensus 217 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l 293 (353)
-+..|.++++|+.+++.+ .+...-. ..|. ++++|+.+++.. ..|+ ..|.++ +|+.+++++|.+
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~I~~----~aF~--------~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRILGQ----GLLG--------GNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECT----TTTT--------TCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CHHHhhCCccCCeEEeCC-ceEEEhh----hhhc--------CCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 223455556666666652 3433223 3444 566666666654 3332 235555 666666666666
Q ss_pred CCCCc
Q 038586 294 DSLPD 298 (353)
Q Consensus 294 ~~iP~ 298 (353)
..+++
T Consensus 358 ~~l~~ 362 (401)
T 4fdw_A 358 PQVFE 362 (401)
T ss_dssp CBCCC
T ss_pred ccccc
Confidence 44443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=9e-09 Score=97.95 Aligned_cols=160 Identities=9% Similarity=0.039 Sum_probs=95.4
Q ss_pred CcEEEEEcCCCCCccccccCCcccccHHHHHhh----ccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKGTISSALLLCL----NCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEI 145 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~----~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~l 145 (353)
.+++.|+|++ |.++..-...+...+ .+| ++|+|++|.++...+......+++|++|+|++ .+..
T Consensus 72 ~~L~~L~Ls~--------n~l~~~~~~~l~~~L~~~~~~L--~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 72 SSLRQLNLAG--------VRMTPVKCTVVAAVLGSGRHAL--DEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp TTCCEEECTT--------SCCCHHHHHHHHHHHSSCSSCE--EEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred hhCCEEEecC--------CCCCHHHHHHHHHHHhhCCCCc--eEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 3678888888 777644333333321 367 88888888876531222233566788888887 2221
Q ss_pred -----CCCC-CCCCCCCEEEccCcccce----ecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee
Q 038586 146 -----IHSV-PEYPTLFDVEGYMASLVQ----ILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG 215 (353)
Q Consensus 146 -----P~~l-~~L~~L~~L~Ls~N~l~g----~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g 215 (353)
...+ ...++|++|+|++|.++. .++.. ...... +++|++++| .++.
T Consensus 142 ~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------L~~~~~-L~~L~Ls~N----------------~l~~ 197 (372)
T 3un9_A 142 ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG-------LAGNTS-VTHLSLLHT----------------GLGD 197 (372)
T ss_dssp HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH-------HHTCSS-CCEEECTTS----------------SCHH
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH-------HhcCCC-cCEEeCCCC----------------CCCc
Confidence 1112 245788889998888763 12222 223344 777888888 4432
Q ss_pred ----eCCcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCC
Q 038586 216 ----EMEHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND 273 (353)
Q Consensus 216 ----~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i 273 (353)
.++..+...++|++|+|++|.++..-.......+. ..++|++|+|++..|
T Consensus 198 ~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~--------~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 198 EGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR--------EHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH--------HCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH--------hCCCCCEEeccCCCC
Confidence 23555667778888888888886421100002233 567788888888444
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=1.5e-06 Score=83.32 Aligned_cols=202 Identities=11% Similarity=0.059 Sum_probs=138.9
Q ss_pred cEEEEEcCCCCCccccccCCcccccH-HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC--CCCCCCCC
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISS-ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH--QGEIIHSV 149 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~--~~~lP~~l 149 (353)
+++.+++.. + ++ .|+. +|.+ ..| +.+++.. .++.. -+..|.++++|+.+++.. ...+|...
T Consensus 136 ~L~~i~l~~--------~-i~-~I~~~aF~~--~~L--~~i~lp~-~l~~I-~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 136 QIAKVVLNE--------G-LK-SIGDMAFFN--STV--QEIVFPS-TLEQL-KEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp CCSEEECCT--------T-CC-EECTTTTTT--CCC--CEEECCT-TCCEE-CSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred CccEEEeCC--------C-cc-EECHHhcCC--CCc--eEEEeCC-CccEe-hHHHhhCcccCCeeecCCCcceEechhh
Confidence 467777776 3 54 5554 4444 468 9999986 67664 456799999999999986 77788766
Q ss_pred CCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCC--CCccccceee----eCCcchhc
Q 038586 150 PEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSN--NNVQTVEFEG----EMEHSLSE 223 (353)
Q Consensus 150 ~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~--~~l~~~~l~g----~~p~~l~~ 223 (353)
...++|+.+.+..+ ++..-... +..+.. ++.+.+..| ++.|+.... ..++.+.+.. .-...|.+
T Consensus 200 F~~~~L~~l~lp~~-l~~I~~~a-------F~~~~~-L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~ 269 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT-LKEIGSQA-------FLKTSQ-LKTIEIPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYY 269 (401)
T ss_dssp TTTCCCSEEECCTT-CCEECTTT-------TTTCTT-CCCEECCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTT
T ss_pred EeecccCEEEeCCc-hheehhhH-------hhCCCC-CCEEecCCC-ccCccccccccCCccEEEeCCCccEEChhHhhC
Confidence 56799999999854 44222223 555566 778888765 554543322 3444444432 22567888
Q ss_pred cCCCCEEEcccCcCc-----ccCCCCCccccchhhhhcccCCCccceeecCC--CCCch-hhcCCCCCCEEEccCCCCCC
Q 038586 224 VYDIFDVERYSSSLD-----QILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPI-ELLCLDNILEIVESEVEIDS 295 (353)
Q Consensus 224 l~~L~~L~Ls~N~l~-----g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~-~l~~l~~L~~L~Ls~N~l~~ 295 (353)
+++|+.+++.+|.+. ...+ ..|. ++++|+.+++.. ..|+. .|.++++|+.+++..| +..
T Consensus 270 c~~L~~l~l~~~~~~~~~~~~I~~----~aF~--------~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 270 CPELAEVTTYGSTFNDDPEAMIHP----YCLE--------GCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CTTCCEEEEESSCCCCCTTCEECT----TTTT--------TCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred CCCCCEEEeCCccccCCcccEECH----HHhh--------CCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 999999999988765 2223 4555 899999999987 44543 5778899999999655 766
Q ss_pred CCcccccccCcccchhcccc
Q 038586 296 LPDRLVFDVREFLSELDQIA 315 (353)
Q Consensus 296 iP~~~~~~~l~~L~~Ld~~~ 315 (353)
|+.. .|..+ .|+.++...
T Consensus 337 I~~~-aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 337 INFS-AFNNT-GIKEVKVEG 354 (401)
T ss_dssp ECTT-SSSSS-CCCEEEECC
T ss_pred EcHH-hCCCC-CCCEEEEcC
Confidence 7653 78888 888887543
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.32 E-value=1.4e-07 Score=89.28 Aligned_cols=183 Identities=9% Similarity=-0.039 Sum_probs=106.7
Q ss_pred CcEEEEEcCCCCCccccccCCcc-c-------ccHHHHHhhccccccEEEeecCCCCC---------CCCCcccCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKILKG-T-------ISSALLLCLNCMIYDIWTLVTINFGG---------IPVPEFVGSLSKL 134 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l~g-~-------lp~~l~~L~~~L~~~~L~Ls~N~l~~---------~~~P~~~~~L~~L 134 (353)
.+|++|.+.. ....| . +..++.++ ++| +.|.+..+.... . ++..+..+++|
T Consensus 107 ~~v~~L~lg~--------~~~~~~~~~~~~~~L~~s~~~l-~~L--~~L~l~~~~~e~~~is~~~~~~-L~~ll~~~P~L 174 (362)
T 2ra8_A 107 PSLKQITIGX--------WGYEGEDCSDIADGIVENKEKF-AHF--EGLFWGDIDFEEQEISWIEQVD-LSPVLDAMPLL 174 (362)
T ss_dssp GGCSEEEECC--------CCSSSCCSHHHHHHHHTTHHHH-TTC--SEEEECCCCTTTCCGGGCBCCB-CHHHHHTCTTC
T ss_pred hhcceEEEcc--------cccCCCcHHHHHHHHHHhhhhc-chh--hheeecCcchhhcccccccccC-HHHHHhcCCCC
Confidence 4788888887 34442 2 23456778 999 999997764421 1 44556788999
Q ss_pred cEEeccC-C-CCCCCCCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccC--CcCCCCCCCCCCCccc
Q 038586 135 SLNTVDH-Q-GEIIHSVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQH--NQANDIPCSSNNNVQT 210 (353)
Q Consensus 135 ~~L~Ls~-~-~~lP~~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~--N~l~~i~~~~~~~l~~ 210 (353)
+.|+|++ . -.+|. + .+++|++|++..+.+....-.. +- ...+.. ++.|+|+. |.... . .
T Consensus 175 ~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~--l~---~~~lp~-L~~L~L~~~~~~~~~--~---~---- 237 (362)
T 2ra8_A 175 NNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED--IL---GSDLPN-LEKLVLYVGVEDYGF--D---G---- 237 (362)
T ss_dssp CEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH--HH---HSBCTT-CCEEEEECBCGGGTC--C---S----
T ss_pred cEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH--HH---HccCCC-CcEEEEecccccccc--c---h----
Confidence 9999987 2 34444 4 3889999999988765310000 00 001222 44444432 10000 0 0
Q ss_pred cceeeeCCcch--hccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCCCCC--------chhhcCC
Q 038586 211 VEFEGEMEHSL--SEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQQND--------PIELLCL 280 (353)
Q Consensus 211 ~~l~g~~p~~l--~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~i--------P~~l~~l 280 (353)
.+. .+...+ ..+++|++|++++|.+....+ ..+. ....++.|+.|+|+...+ +..+..+
T Consensus 238 -~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~----~~la-----~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 238 -DMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVV----EMFL-----ESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp -CGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHH----HHHH-----HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred -hHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHH----HHHH-----hCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 000 000111 246889999999998864322 1111 112578999999988443 3334557
Q ss_pred CCCCEEEccCCCCC
Q 038586 281 DNILEIVESEVEID 294 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~ 294 (353)
++|+.|++++|.++
T Consensus 307 ~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 307 KHLKFINMKYNYLS 320 (362)
T ss_dssp TTCSEEECCSBBCC
T ss_pred CcceEEECCCCcCC
Confidence 89999999999874
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=1.5e-06 Score=78.54 Aligned_cols=20 Identities=0% Similarity=-0.127 Sum_probs=13.1
Q ss_pred CccccceEecCCCCcEEEEE
Q 038586 59 CCKWRGVCCNNTTSHFKVLN 78 (353)
Q Consensus 59 ~C~w~gv~c~~~~~~v~~L~ 78 (353)
.|.|.|+.|+....+|+.+.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v 96 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIII 96 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEE
T ss_pred HHhcCcEEECCCCCEEEEEE
Confidence 57899999975444554433
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=2.5e-06 Score=77.09 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=60.7
Q ss_pred hccCCCCEEEcccCcCcc--cCCCCCccccchhhhhcccCCCccceeecCCCCCc--hhhcCCC--CCCEEEccCCCC-C
Q 038586 222 SEVYDIFDVERYSSSLDQ--ILESERTEDHGDAAIQNKQQEAVEEEALLAQQNDP--IELLCLD--NILEIVESEVEI-D 294 (353)
Q Consensus 222 ~~l~~L~~L~Ls~N~l~g--~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP--~~l~~l~--~L~~L~Ls~N~l-~ 294 (353)
.++++|+.|+|++|+|++ .+| ..++ .+++|+.|+|++..+- ..+..++ +|++|+|++|.+ +
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~----~~~~--------~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMS----SIVQ--------KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGT----THHH--------HSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccch----hHHh--------hCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 467889999999999987 445 4556 7889999999883332 2344444 899999999999 7
Q ss_pred CCCcc-----cccccCcccchhccccC
Q 038586 295 SLPDR-----LVFDVREFLSELDQIAE 316 (353)
Q Consensus 295 ~iP~~-----~~~~~l~~L~~Ld~~~~ 316 (353)
.+|.. ..+..++.|+.||....
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred ccCcchhHHHHHHHHCcccCeECCcCC
Confidence 78741 14677788888886443
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=6.7e-06 Score=77.73 Aligned_cols=179 Identities=11% Similarity=-0.000 Sum_probs=105.7
Q ss_pred CcEEEEEcCCCCCccccccCC----cccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccCCCCCCC
Q 038586 72 SHFKVLNLRSSNDENARRKIL----KGTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDHQGEIIH 147 (353)
Q Consensus 72 ~~v~~L~L~~~~~~~~~~~~l----~g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~~~~lP~ 147 (353)
.+++.|.+..... ....+ .+.+++.+..+ ++| +.|+|++|.-.. +|. + .+++|++|+|.. +.++.
T Consensus 139 ~~L~~L~l~~~~~---e~~~is~~~~~~L~~ll~~~-P~L--~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~-~~l~~ 207 (362)
T 2ra8_A 139 AHFEGLFWGDIDF---EEQEISWIEQVDLSPVLDAM-PLL--NNLKIKGTNNLS--IGK-K-PRPNLKSLEIIS-GGLPD 207 (362)
T ss_dssp TTCSEEEECCCCT---TTCCGGGCBCCBCHHHHHTC-TTC--CEEEEECCBTCB--CCS-C-BCTTCSEEEEEC-SBCCH
T ss_pred chhhheeecCcch---hhcccccccccCHHHHHhcC-CCC--cEEEEeCCCCce--ecc-c-cCCCCcEEEEec-CCCCh
Confidence 3788888866211 00111 23566777778 999 999999884222 455 4 389999999986 22332
Q ss_pred ----CC--CCCCCCCEEEccC--ccccee--cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeC
Q 038586 148 ----SV--PEYPTLFDVEGYM--ASLVQI--LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEM 217 (353)
Q Consensus 148 ----~l--~~L~~L~~L~Ls~--N~l~g~--lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~ 217 (353)
.+ ..+++|++|+|+. |...|. +.....+ +.. ..... ++.|.+.+| ++....
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~-~~~p~-Lr~L~L~~~----------------~i~~~~ 268 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSK-DRFPN-LKWLGIVDA----------------EEQNVV 268 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCT-TTCTT-CCEEEEESC----------------TTHHHH
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-Hhc-CCCCC-cCEEeCCCC----------------CCchHH
Confidence 12 3789999999864 222221 1111100 000 12344 788888888 444332
Q ss_pred Ccchh---ccCCCCEEEcccCcCccc----CCCCCccccchhhhhcccCCCccceeecCCCCCchh-hcCCCC--CCEEE
Q 038586 218 EHSLS---EVYDIFDVERYSSSLDQI----LESERTEDHGDAAIQNKQQEAVEEEALLAQQNDPIE-LLCLDN--ILEIV 287 (353)
Q Consensus 218 p~~l~---~l~~L~~L~Ls~N~l~g~----~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~iP~~-l~~l~~--L~~L~ 287 (353)
+..+. .+++|++|+|+.|.+.+. ++ ..+. .+++|+.|++++..+-.. ...+.. ...++
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~----~~L~--------~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~ 336 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLL----DHVD--------KIKHLKFINMKYNYLSDEMKKELQKSLPMKID 336 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH----TTHH--------HHTTCSEEECCSBBCCHHHHHHHHHHCCSEEE
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHH----hhcc--------cCCcceEEECCCCcCCHHHHHHHHHHcCCEEE
Confidence 22332 478899999999988652 22 2223 678999999988444432 222221 36788
Q ss_pred ccCCC
Q 038586 288 ESEVE 292 (353)
Q Consensus 288 Ls~N~ 292 (353)
+++++
T Consensus 337 ~~~~~ 341 (362)
T 2ra8_A 337 VSDSQ 341 (362)
T ss_dssp CCSBC
T ss_pred ecCCc
Confidence 88887
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.67 E-value=3.7e-06 Score=71.62 Aligned_cols=113 Identities=10% Similarity=-0.092 Sum_probs=62.8
Q ss_pred CCCCCCCCEEEccCc-cccee----cCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceee----eCCc
Q 038586 149 VPEYPTLFDVEGYMA-SLVQI----LEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEG----EMEH 219 (353)
Q Consensus 149 l~~L~~L~~L~Ls~N-~l~g~----lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g----~~p~ 219 (353)
+...++|++|+|++| .+... +... ...... +++|++++| .+.. .+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~-------L~~~~~-L~~L~Ls~n----------------~i~~~g~~~l~~ 87 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEA-------LKTNTY-VKKFSIVGT----------------RSNDPVAFALAE 87 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHH-------HTTCCS-CCEEECTTS----------------CCCHHHHHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHH-------HHhCCC-cCEEECcCC----------------CCChHHHHHHHH
Confidence 445677777777777 65421 1111 122233 666777777 3321 2334
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeec--CCCCC--------chhhcCCCCCCEEEcc
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALL--AQQND--------PIELLCLDNILEIVES 289 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L--~~~~i--------P~~l~~l~~L~~L~Ls 289 (353)
.+...+.|++|+|++|.|...--......+. ..++|++|++ ++..+ ...+...++|++|+|+
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~--------~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQ--------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGG--------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHH--------hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 4555677888888888875321000002233 5566777777 44222 2344556788888888
Q ss_pred CCCC
Q 038586 290 EVEI 293 (353)
Q Consensus 290 ~N~l 293 (353)
+|.+
T Consensus 160 ~n~i 163 (185)
T 1io0_A 160 FTQQ 163 (185)
T ss_dssp CSSH
T ss_pred CCCC
Confidence 8877
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=1.9e-06 Score=73.52 Aligned_cols=113 Identities=10% Similarity=-0.031 Sum_probs=54.9
Q ss_pred HHHHhhccccccEEEeecC-CCCCCC---CCcccCCCCCCcEEeccC--CC-----CCCCCCCCCCCCCEEEccCcccce
Q 038586 99 ALLLCLNCMIYDIWTLVTI-NFGGIP---VPEFVGSLSKLSLNTVDH--QG-----EIIHSVPEYPTLFDVEGYMASLVQ 167 (353)
Q Consensus 99 ~l~~L~~~L~~~~L~Ls~N-~l~~~~---~P~~~~~L~~L~~L~Ls~--~~-----~lP~~l~~L~~L~~L~Ls~N~l~g 167 (353)
.+... +.| ++|+|++| .+.... +...+...++|++|+|++ .+ .+...+...++|++|+|++|.+..
T Consensus 31 ~l~~~-~~L--~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 31 IQNND-PDL--EEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHTTC-TTC--CEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHhcC-CCC--CEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 34444 556 66666666 554210 112233444555555554 11 122233344567777777776653
Q ss_pred e----cCccccccCCCcCCCCccccceec--cCCcCCCCCCCCCCCccccceee----eCCcchhccCCCCEEEcccCcC
Q 038586 168 I----LEKDQHDEGSQNGQQGAEAEAVCI--QHNQANDIPCSSNNNVQTVEFEG----EMEHSLSEVYDIFDVERYSSSL 237 (353)
Q Consensus 168 ~----lp~~~~L~l~~~~~l~~~l~~l~l--~~N~l~~i~~~~~~~l~~~~l~g----~~p~~l~~l~~L~~L~Ls~N~l 237 (353)
. +... ...... ++++++ ++| .+.. .+...+...+.|++|++++|.+
T Consensus 108 ~g~~~l~~~-------L~~n~~-L~~L~L~~~~N----------------~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 108 SGILALVEA-------LQSNTS-LIELRIDNQSQ----------------PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHG-------GGGCSS-CCEEECCCCSS----------------CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHH-------HHhCCC-ceEEEecCCCC----------------CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1 1111 122223 566666 556 3322 1333445556777777777766
Q ss_pred c
Q 038586 238 D 238 (353)
Q Consensus 238 ~ 238 (353)
.
T Consensus 164 ~ 164 (185)
T 1io0_A 164 G 164 (185)
T ss_dssp H
T ss_pred C
Confidence 3
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.82 E-value=0.0072 Score=57.11 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=102.6
Q ss_pred HHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCC-CCCCCCCCCEEEccCcccc-e-------
Q 038586 98 SALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIH-SVPEYPTLFDVEGYMASLV-Q------- 167 (353)
Q Consensus 98 ~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~-~l~~L~~L~~L~Ls~N~l~-g------- 167 (353)
.+|.++ ..| +.+.+..+. ... -...|.++++|+.+++.. ...++. .+.++..|+.+.+..+... |
T Consensus 156 ~aF~~c-~~L--~~i~l~~~~-~~I-~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATC-ESL--EYVSLPDSM-ETL-HNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT 230 (394)
T ss_dssp TTTTTC-TTC--CEEECCTTC-CEE-CTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred hhhccc-CCC--cEEecCCcc-cee-ccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence 356777 888 888887553 332 344577888888888866 444433 4666777777766554321 0
Q ss_pred -----ecCcc-ccccCCCcCCCCccccceeccCCcCCCCCC---CCCCCccccceee-eC-CcchhccCCCCEEEcccCc
Q 038586 168 -----ILEKD-QHDEGSQNGQQGAEAEAVCIQHNQANDIPC---SSNNNVQTVEFEG-EM-EHSLSEVYDIFDVERYSSS 236 (353)
Q Consensus 168 -----~lp~~-~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~---~~~~~l~~~~l~g-~~-p~~l~~l~~L~~L~Ls~N~ 236 (353)
.+|.. +.+.-..+..... ++.+.+..+. ..+.. .....++.+.+.. .+ ...+....+|+.+.+..+
T Consensus 231 ~l~~i~ip~~~~~i~~~~f~~~~~-l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 231 GVKNIIIPDSFTELGKSVFYGCTD-LESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp CCCEEEECTTCCEECSSTTTTCSS-CCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-
T ss_pred CCceEEECCCceeccccccccccc-ceeEEcCCCc-ceeeccccccccccceeccCceeeccccccccccccccccccc-
Confidence 11111 1111111222222 3444444331 11111 1111111111110 11 234556677777777644
Q ss_pred CcccCCCCCccccchhhhhcccCCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 237 LDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 237 l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
+..+-+ ..+. ++.+|+.+++.. ..|+ ..|.++++|+.+++..| +..|++. .|.++++|++++.
T Consensus 308 i~~I~~----~aF~--------~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-aF~~C~~L~~i~l 373 (394)
T 4fs7_A 308 VKFIGE----EAFE--------SCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGAN-AFQGCINLKKVEL 373 (394)
T ss_dssp CCEECT----TTTT--------TCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTT-TBTTCTTCCEEEE
T ss_pred cceech----hhhc--------CCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHH-HhhCCCCCCEEEE
Confidence 433223 3455 777888887765 4443 35777788888888766 6666553 6777777777653
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.59 E-value=0.0057 Score=57.82 Aligned_cols=78 Identities=5% Similarity=-0.008 Sum_probs=55.0
Q ss_pred CcchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCCC
Q 038586 218 EHSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEID 294 (353)
Q Consensus 218 p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l~ 294 (353)
..+|.++.+|+.+++..+ ++..-. ..|. ++.+|+.+.+.. ..|+ ..|.++++|+.+++..+ +.
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~----~aF~--------~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~-~~ 378 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGK----RSFR--------GCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR-LE 378 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECT----TTTT--------TCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG-GG
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhH----Hhcc--------CCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC-CE
Confidence 456888999999999754 544334 5566 899999999976 4454 35888999999998654 43
Q ss_pred CCCcccccccCcccchh
Q 038586 295 SLPDRLVFDVREFLSEL 311 (353)
Q Consensus 295 ~iP~~~~~~~l~~L~~L 311 (353)
.+.. .|.+++.|+.+
T Consensus 379 ~~~~--~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRY--DFEDTTKFKWI 393 (394)
T ss_dssp GGGG--GBCTTCEEEEE
T ss_pred Ehhh--eecCCCCCcEE
Confidence 3444 56666666543
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.43 E-value=0.0039 Score=49.62 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=38.4
Q ss_pred CCCCEEEccCCCCCCCCcccccccCcccchhccccCCCcccccccccccc
Q 038586 281 DNILEIVESEVEIDSLPDRLVFDVREFLSELDQIAEPRDEECGKLQAVAW 330 (353)
Q Consensus 281 ~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~~~~~~~~~c~~l~~~~~ 330 (353)
++|++|+|++|+|..||.. .|..++.|+.|+...+++.++|...+...|
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~NP~~CdC~l~~l~~w 79 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPG-LLDALPALRTAHLGANPWRCDCRLVPLRAW 79 (130)
T ss_dssp TTCSEEECTTSCCSSCCTT-TGGGCTTCCEEECCSSCCBCSGGGHHHHHH
T ss_pred cCCCEEECCCCcCCccChh-hhhhccccCEEEecCCCeeccCccHHHHHH
Confidence 3688888888888778763 577888888888888888888886666666
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.61 E-value=0.12 Score=48.03 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=31.2
Q ss_pred chhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCch-hhcCCCCCCEEEccC
Q 038586 220 SLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPI-ELLCLDNILEIVESE 290 (353)
Q Consensus 220 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~-~l~~l~~L~~L~Ls~ 290 (353)
.|.++++|+.+.+.++.+...-+ ..|. ++.+|+.+.+.. ..|+. .|.++++|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~----~aF~--------~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEP----RVFM--------DCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECT----TTTT--------TCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccceehh----hhhc--------CCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence 45555666666666555543333 3444 566666666644 33332 355556666665543
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.55 E-value=0.0081 Score=50.42 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=38.2
Q ss_pred cchhccCCCCEEEcccCc-CcccCCCCCccccchhhhhcccCC----CccceeecCC-CCCch----hhcCCCCCCEEEc
Q 038586 219 HSLSEVYDIFDVERYSSS-LDQILESERTEDHGDAAIQNKQQE----AVEEEALLAQ-QNDPI----ELLCLDNILEIVE 288 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~-l~g~~p~~~~~~~~~~~~~~~~~l----~~L~~L~L~~-~~iP~----~l~~l~~L~~L~L 288 (353)
..+..+++|++|+|++|. ++..- ...++ .+ ++|++|++++ ..|.. .+..+++|++|++
T Consensus 79 ~~L~~~~~L~~L~L~~C~~ItD~g----L~~L~--------~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L 146 (176)
T 3e4g_A 79 DHMEGLQYVEKIRLCKCHYIEDGC----LERLS--------QLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFL 146 (176)
T ss_dssp GGGTTCSCCCEEEEESCTTCCHHH----HHHHH--------TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEE
T ss_pred HHhcCCCCCCEEEeCCCCccCHHH----HHHHH--------hcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEEC
Confidence 345677888888888874 43210 01222 32 3688888877 44543 3566788888888
Q ss_pred cCCC
Q 038586 289 SEVE 292 (353)
Q Consensus 289 s~N~ 292 (353)
+++.
T Consensus 147 ~~c~ 150 (176)
T 3e4g_A 147 SDLP 150 (176)
T ss_dssp ESCT
T ss_pred CCCC
Confidence 8775
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.37 E-value=0.23 Score=46.60 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=30.9
Q ss_pred CCCccceeecCC--CCCc-hhhcCCCCCCEEEccCCCCCCCCcccccccCcccchhcc
Q 038586 259 QEAVEEEALLAQ--QNDP-IELLCLDNILEIVESEVEIDSLPDRLVFDVREFLSELDQ 313 (353)
Q Consensus 259 ~l~~L~~L~L~~--~~iP-~~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~l~~L~~Ld~ 313 (353)
++.+|+.+.+.. ..|. ..|.++.+|+.+.+..+ +..|++. .|.++++|+.++.
T Consensus 309 ~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~-aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 309 GCISLKSIDIPEGITQILDDAFAGCEQLERIAIPSS-VTKIPES-AFSNCTALNNIEY 364 (394)
T ss_dssp TCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECTT-CCBCCGG-GGTTCTTCCEEEE
T ss_pred CCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECcc-cCEEhHh-HhhCCCCCCEEEE
Confidence 566666666654 3333 24556667777776433 5555543 5666666666653
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.34 E-value=0.28 Score=45.57 Aligned_cols=61 Identities=20% Similarity=0.019 Sum_probs=29.3
Q ss_pred cccH-HHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccC-CCCCCCCCCCCCCCCEEEcc
Q 038586 95 TISS-ALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDH-QGEIIHSVPEYPTLFDVEGY 161 (353)
Q Consensus 95 ~lp~-~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~-~~~lP~~l~~L~~L~~L~Ls 161 (353)
.|+. +|.++ .+| +.+++..+ ++.. -...|.+. +|+.+.+.. ...++.......+|+.+.+.
T Consensus 59 ~Ig~~aF~~C-~~L--~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~l~~I~~~aF~~~~L~~i~lp 121 (379)
T 4h09_A 59 SIGEANFNSC-YNM--TKVTVAST-VTSI-GDGAFADT-KLQSYTGMERVKKFGDYVFQGTDLDDFEFP 121 (379)
T ss_dssp EECTTTTTTC-TTC--CEEEECTT-CCEE-CTTTTTTC-CCCEEEECTTCCEECTTTTTTCCCSEEECC
T ss_pred ChHHHHhhCC-CCC--CEEEeCCc-ceEe-chhhhcCC-CCceEECCceeeEeccceeccCCcccccCC
Confidence 3443 56666 777 77777543 4432 22334444 455555444 33333332223355555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.10 E-value=0.0021 Score=54.08 Aligned_cols=80 Identities=6% Similarity=-0.032 Sum_probs=49.2
Q ss_pred cEEEEEcCCCCCccccccCCcccccHHHHHhhccccccEEEeecCC-CCCCCCCcccCCC----CCCcEEeccCCCCCC-
Q 038586 73 HFKVLNLRSSNDENARRKILKGTISSALLLCLNCMIYDIWTLVTIN-FGGIPVPEFVGSL----SKLSLNTVDHQGEII- 146 (353)
Q Consensus 73 ~v~~L~L~~~~~~~~~~~~l~g~lp~~l~~L~~~L~~~~L~Ls~N~-l~~~~~P~~~~~L----~~L~~L~Ls~~~~lP- 146 (353)
++++||+++ +.++..==..+..+ ++| ++|+|+++. ++.. --..+..+ ++|++|+|++-..|.
T Consensus 62 ~L~~LDLs~--------~~Itd~GL~~L~~~-~~L--~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATD--------SCIMSIGFDHMEGL-QYV--EKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEES--------CCCCGGGGGGGTTC-SCC--CEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcC--------CCccHHHHHHhcCC-CCC--CEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 688888888 55543222345667 888 888888875 5432 12234444 368888888711121
Q ss_pred ---CCCCCCCCCCEEEccCcc
Q 038586 147 ---HSVPEYPTLFDVEGYMAS 164 (353)
Q Consensus 147 ---~~l~~L~~L~~L~Ls~N~ 164 (353)
..+.++++|++|+++++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 135567888888887764
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.58 E-value=0.15 Score=47.91 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=67.0
Q ss_pred CCCCCCCCCEEEccCcccceecCccccccCCCcCCCCccccceeccCCcCCCCCCCCCCCccccceeeeCCcchhccCCC
Q 038586 148 SVPEYPTLFDVEGYMASLVQILEKDQHDEGSQNGQQGAEAEAVCIQHNQANDIPCSSNNNVQTVEFEGEMEHSLSEVYDI 227 (353)
Q Consensus 148 ~l~~L~~L~~L~Ls~N~l~g~lp~~~~L~l~~~~~l~~~l~~l~l~~N~l~~i~~~~~~~l~~~~l~g~~p~~l~~l~~L 227 (353)
.|.++.+|+.+.+..+... +.. ..+..... ++.+.+..+ ++.--...|.++.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~~--I~~------~aF~~c~~-L~~i~l~~~-----------------i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS--IGT------GAFMNCPA-LQDIEFSSR-----------------ITELPESVFAGCISL 313 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE--ECT------TTTTTCTT-CCEEECCTT-----------------CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccce--ecC------cccccccc-cccccCCCc-----------------ccccCceeecCCCCc
Confidence 4667788888877554321 111 11333334 555555432 222223467777888
Q ss_pred CEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--CCCch-hhcCCCCCCEEEccCCCCCCCCccccccc
Q 038586 228 FDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--QNDPI-ELLCLDNILEIVESEVEIDSLPDRLVFDV 304 (353)
Q Consensus 228 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~~iP~-~l~~l~~L~~L~Ls~N~l~~iP~~~~~~~ 304 (353)
+.+++..+ ++.+-. ..|. ++.+|+.+.+.. ..|.. .|.++++|+.+++.++.... . .|..
T Consensus 314 ~~i~lp~~-v~~I~~----~aF~--------~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~--~~~~ 376 (394)
T 4gt6_A 314 KSIDIPEG-ITQILD----DAFA--------GCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSRSQW--N--AIST 376 (394)
T ss_dssp CEEECCTT-CCEECT----TTTT--------TCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCHHHH--H--TCBC
T ss_pred CEEEeCCc-ccEehH----hHhh--------CCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCceeeh--h--hhhc
Confidence 88888654 433333 4455 788888888865 45543 57778888888888775411 1 2334
Q ss_pred Ccccchhc
Q 038586 305 REFLSELD 312 (353)
Q Consensus 305 l~~L~~Ld 312 (353)
...|+.++
T Consensus 377 ~~~L~~i~ 384 (394)
T 4gt6_A 377 DSGLQNLP 384 (394)
T ss_dssp CCCC----
T ss_pred cCCCCEEE
Confidence 45555544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.53 E-value=0.061 Score=42.54 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=31.9
Q ss_pred EEEcCCCCCccccccCCc-ccccHHHHHhhccccccEEEeecCCCCCCCCCcccCCCCCCcEEeccCCCCCCCCCCCCCC
Q 038586 76 VLNLRSSNDENARRKILK-GTISSALLLCLNCMIYDIWTLVTINFGGIPVPEFVGSLSKLSLNTVDHQGEIIHSVPEYPT 154 (353)
Q Consensus 76 ~L~L~~~~~~~~~~~~l~-g~lp~~l~~L~~~L~~~~L~Ls~N~l~~~~~P~~~~~L~~L~~L~Ls~~~~lP~~l~~L~~ 154 (353)
.++.++ ++++ ..+|..+ ...| ++|+|++|+|+. +|.. .|..+++
T Consensus 12 ~v~Cs~--------~~L~~~~vP~~l---p~~l--~~L~Ls~N~l~~--l~~~--------------------~f~~l~~ 56 (130)
T 3rfe_A 12 LVDCGR--------RGLTWASLPTAF---PVDT--TELVLTGNNLTA--LPPG--------------------LLDALPA 56 (130)
T ss_dssp EEECCS--------SCCCTTTSCSCC---CTTC--SEEECTTSCCSS--CCTT--------------------TGGGCTT
T ss_pred EEEeCC--------CCCccccCCCCC---CcCC--CEEECCCCcCCc--cChh--------------------hhhhccc
Confidence 566666 6664 3455432 1456 777777777776 3332 1344556
Q ss_pred CCEEEccCcccc
Q 038586 155 LFDVEGYMASLV 166 (353)
Q Consensus 155 L~~L~Ls~N~l~ 166 (353)
|++|+|++|.+.
T Consensus 57 L~~L~L~~NP~~ 68 (130)
T 3rfe_A 57 LRTAHLGANPWR 68 (130)
T ss_dssp CCEEECCSSCCB
T ss_pred cCEEEecCCCee
Confidence 666667666543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.54 E-value=0.03 Score=47.82 Aligned_cols=67 Identities=10% Similarity=-0.094 Sum_probs=34.1
Q ss_pred cchhccCCCCEEEcccCcCcccCCCCCccccchhhhhcccCCCccceeecCC--C-CCc--------hhhcCCCCCCEEE
Q 038586 219 HSLSEVYDIFDVERYSSSLDQILESERTEDHGDAAIQNKQQEAVEEEALLAQ--Q-NDP--------IELLCLDNILEIV 287 (353)
Q Consensus 219 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~l~~L~~L~L~~--~-~iP--------~~l~~l~~L~~L~ 287 (353)
+.+..-+.|++|+|++|.|...-- ..+. +..+.-+.|++|+|++ . .+- ..+..-+.|+.|+
T Consensus 92 ~aL~~N~tL~~L~L~~N~Ig~~Ga----~ala----~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~ 163 (197)
T 1pgv_A 92 ELIETSPSLRVLNVESNFLTPELL----ARLL----RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVG 163 (197)
T ss_dssp HHHHHCSSCCEEECCSSBCCHHHH----HHHH----HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHhcCCccCeEecCCCcCCHHHH----HHHH----HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEe
Confidence 344445678888888887753110 1111 0011334566676653 1 222 2333446677777
Q ss_pred ccCCCC
Q 038586 288 ESEVEI 293 (353)
Q Consensus 288 Ls~N~l 293 (353)
++.|.+
T Consensus 164 l~~~~~ 169 (197)
T 1pgv_A 164 ISFASM 169 (197)
T ss_dssp CCCCCH
T ss_pred ccCCCc
Confidence 776655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.84 E-value=1.1 Score=38.03 Aligned_cols=15 Identities=0% Similarity=-0.172 Sum_probs=8.1
Q ss_pred CCCCCCEEEccCCCC
Q 038586 279 CLDNILEIVESEVEI 293 (353)
Q Consensus 279 ~l~~L~~L~Ls~N~l 293 (353)
.-+.|++|+|++|.|
T Consensus 96 ~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 96 TSPSLRVLNVESNFL 110 (197)
T ss_dssp HCSSCCEEECCSSBC
T ss_pred cCCccCeEecCCCcC
Confidence 334555555555555
Done!