Query 038591
Match_columns 82
No_of_seqs 213 out of 1093
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038591.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038591hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvl_A TRMBF1; coactivator, he 99.7 7.4E-18 2.5E-22 96.7 8.1 76 5-80 11-96 (107)
2 2ewt_A BLDD, putative DNA-bind 99.7 1.1E-17 3.7E-22 88.8 8.1 59 21-79 9-69 (71)
3 3qq6_A HTH-type transcriptiona 99.7 1.3E-17 4.5E-22 90.7 7.3 59 20-78 10-69 (78)
4 3s8q_A R-M controller protein; 99.7 1.2E-17 4.1E-22 91.1 7.2 58 21-78 12-69 (82)
5 3omt_A Uncharacterized protein 99.7 4.1E-18 1.4E-22 91.2 5.2 59 21-79 9-67 (73)
6 3kz3_A Repressor protein CI; f 99.7 1.6E-17 5.5E-22 90.4 7.5 58 22-79 14-71 (80)
7 3g5g_A Regulatory protein; tra 99.7 2.4E-18 8.2E-23 97.7 4.1 59 20-78 28-86 (99)
8 1y7y_A C.AHDI; helix-turn-heli 99.7 2.9E-17 1E-21 87.5 8.0 59 21-79 14-72 (74)
9 3t76_A VANU, transcriptional r 99.7 2.7E-17 9.4E-22 91.8 8.2 59 20-79 24-82 (88)
10 3f6w_A XRE-family like protein 99.7 1.8E-17 6E-22 90.5 6.7 58 21-78 15-72 (83)
11 3lfp_A CSP231I C protein; tran 99.7 4E-17 1.4E-21 91.9 7.7 59 21-79 2-64 (98)
12 2r1j_L Repressor protein C2; p 99.7 2.4E-17 8.1E-22 86.5 6.3 58 21-78 6-63 (68)
13 2k9q_A Uncharacterized protein 99.7 1.8E-17 6.1E-22 89.6 6.0 58 21-78 3-60 (77)
14 3b7h_A Prophage LP1 protein 11 99.7 4.9E-17 1.7E-21 87.5 7.6 58 21-78 8-66 (78)
15 2b5a_A C.BCLI; helix-turn-heli 99.7 4.1E-17 1.4E-21 87.7 7.2 58 21-78 11-68 (77)
16 3op9_A PLI0006 protein; struct 99.7 2.9E-17 1E-21 94.6 6.6 60 19-78 8-67 (114)
17 3ivp_A Putative transposon-rel 99.7 6.1E-17 2.1E-21 94.7 8.0 58 21-78 13-70 (126)
18 1x57_A Endothelial differentia 99.7 9.1E-17 3.1E-21 89.2 8.0 59 21-79 14-72 (91)
19 1adr_A P22 C2 repressor; trans 99.7 4.6E-17 1.6E-21 87.2 6.6 58 21-78 6-63 (76)
20 2kpj_A SOS-response transcript 99.7 7.2E-17 2.5E-21 90.3 7.6 59 21-79 10-68 (94)
21 3vk0_A NHTF, transcriptional r 99.7 6.5E-17 2.2E-21 93.4 7.2 59 21-79 22-80 (114)
22 3eus_A DNA-binding protein; st 99.7 9.2E-17 3.1E-21 88.7 7.5 57 21-77 15-71 (86)
23 3trb_A Virulence-associated pr 99.7 1.1E-16 3.7E-21 91.7 7.9 58 20-77 13-71 (104)
24 2xi8_A Putative transcription 99.7 2.6E-17 8.8E-22 86.0 4.7 57 22-78 3-59 (66)
25 3bs3_A Putative DNA-binding pr 99.7 5.3E-17 1.8E-21 87.0 6.0 59 21-79 11-69 (76)
26 3mlf_A Transcriptional regulat 99.7 7E-17 2.4E-21 93.2 6.6 59 21-79 24-82 (111)
27 1lmb_3 Protein (lambda repress 99.7 1.5E-16 5E-21 88.3 7.6 58 22-79 19-76 (92)
28 2wiu_B HTH-type transcriptiona 99.7 8.1E-17 2.8E-21 88.5 6.1 59 21-79 13-71 (88)
29 3fmy_A HTH-type transcriptiona 99.7 1.1E-16 3.7E-21 86.1 6.3 61 18-79 9-69 (73)
30 3f52_A CLP gene regulator (CLG 99.7 1.1E-16 3.8E-21 92.5 6.7 57 22-78 30-86 (117)
31 2a6c_A Helix-turn-helix motif; 99.7 2.4E-16 8.3E-21 86.4 7.6 57 22-78 20-77 (83)
32 1r69_A Repressor protein CI; g 99.7 1.4E-16 4.7E-21 83.9 6.1 56 22-78 3-58 (69)
33 3cec_A Putative antidote prote 99.7 3.7E-16 1.3E-20 88.7 7.2 60 19-78 17-76 (104)
34 1b0n_A Protein (SINR protein); 99.7 5.1E-16 1.7E-20 88.5 7.5 58 21-78 2-60 (111)
35 4ghj_A Probable transcriptiona 99.6 8.8E-16 3E-20 87.6 7.7 54 22-77 38-91 (101)
36 2ict_A Antitoxin HIGA; helix-t 99.6 7.8E-16 2.7E-20 85.9 7.2 58 20-77 8-65 (94)
37 1zug_A Phage 434 CRO protein; 99.6 4.4E-16 1.5E-20 82.3 5.9 57 21-78 4-60 (71)
38 3fym_A Putative uncharacterize 99.6 4.4E-16 1.5E-20 92.1 5.7 58 21-78 4-67 (130)
39 2ef8_A C.ECOT38IS, putative tr 99.6 1.4E-15 4.8E-20 82.8 7.2 57 22-78 12-72 (84)
40 2wus_R RODZ, putative uncharac 99.6 6.2E-16 2.1E-20 89.6 6.1 58 21-78 8-71 (112)
41 2l49_A C protein; P2 bacteriop 99.6 7.9E-16 2.7E-20 86.3 6.2 58 21-78 5-64 (99)
42 2o38_A Hypothetical protein; a 99.6 1.2E-15 4.1E-20 89.3 6.9 57 22-78 42-99 (120)
43 2ppx_A AGR_C_3184P, uncharacte 99.6 4E-16 1.4E-20 88.1 4.3 57 21-78 31-87 (99)
44 2eby_A Putative HTH-type trans 99.6 1.1E-15 3.8E-20 87.8 6.1 59 20-78 10-69 (113)
45 1y9q_A Transcriptional regulat 99.6 3.1E-15 1E-19 92.6 8.6 59 21-79 12-70 (192)
46 3kxa_A NGO0477 protein, putati 99.6 7E-16 2.4E-20 92.4 5.1 57 22-78 70-126 (141)
47 2bnm_A Epoxidase; oxidoreducta 99.6 5E-15 1.7E-19 91.8 8.2 59 21-79 11-70 (198)
48 2ofy_A Putative XRE-family tra 99.6 3.7E-15 1.3E-19 81.7 6.4 56 21-78 17-73 (86)
49 3bd1_A CRO protein; transcript 99.6 2E-15 7E-20 81.9 3.9 55 23-79 2-58 (79)
50 3r1f_A ESX-1 secretion-associa 99.6 1.2E-14 4.1E-19 86.6 7.2 58 21-78 8-77 (135)
51 3u3w_A Transcriptional activat 99.5 1.6E-14 5.6E-19 92.9 7.0 58 21-79 6-63 (293)
52 3qwg_A ESX-1 secretion-associa 99.5 2.5E-14 8.5E-19 84.1 7.1 58 21-78 6-75 (123)
53 3pxp_A Helix-turn-helix domain 99.5 3.2E-14 1.1E-18 94.0 6.9 60 21-80 7-73 (292)
54 3o9x_A Uncharacterized HTH-typ 99.5 6.1E-14 2.1E-18 82.6 6.0 60 18-78 69-128 (133)
55 2awi_A PRGX; repressor, pherom 99.5 6.7E-14 2.3E-18 92.7 6.1 57 21-78 4-60 (317)
56 4ich_A Transcriptional regulat 99.5 5.9E-15 2E-19 96.5 0.0 59 20-78 30-88 (311)
57 1neq_A DNA-binding protein NER 99.5 3.5E-13 1.2E-17 72.9 7.0 59 18-79 7-65 (74)
58 2p5t_A Putative transcriptiona 99.4 1.3E-14 4.3E-19 87.9 0.0 58 21-78 2-59 (158)
59 3bdn_A Lambda repressor; repre 99.4 1.8E-13 6.3E-18 86.7 4.4 59 21-79 18-76 (236)
60 2qfc_A PLCR protein; TPR, HTH, 99.4 6.7E-14 2.3E-18 90.0 2.1 57 21-78 6-62 (293)
61 2l1p_A DNA-binding protein SAT 99.4 2.4E-13 8.2E-18 74.2 3.8 49 22-74 23-71 (83)
62 2fjr_A Repressor protein CI; g 99.3 7.4E-12 2.5E-16 77.0 6.3 54 22-78 11-64 (189)
63 2auw_A Hypothetical protein NE 99.2 8.9E-11 3E-15 72.3 7.4 47 19-65 89-135 (170)
64 1dw9_A Cyanate lyase; cyanate 99.0 7.8E-10 2.7E-14 67.1 6.3 58 22-79 15-72 (156)
65 1nr3_A MTH0916, DNA-binding pr 99.0 2.4E-13 8E-18 79.5 -9.2 49 29-78 2-56 (122)
66 1rzs_A Antirepressor, regulato 98.9 2.8E-09 9.7E-14 55.2 5.3 48 26-77 4-51 (61)
67 1uxc_A FRUR (1-57), fructose r 98.8 1.3E-08 4.5E-13 53.5 5.9 46 34-79 1-52 (65)
68 2l8n_A Transcriptional repress 98.7 3.5E-08 1.2E-12 52.1 5.9 46 33-78 9-57 (67)
69 1zx4_A P1 PARB, plasmid partit 98.7 7.6E-09 2.6E-13 64.7 2.6 56 22-78 14-88 (192)
70 3g7d_A PHPD; non heme Fe(II) d 98.7 5E-08 1.7E-12 65.5 6.1 57 22-78 232-289 (443)
71 1s4k_A Putative cytoplasmic pr 98.6 2.8E-07 9.7E-12 53.3 8.0 51 20-70 3-55 (120)
72 2h8r_A Hepatocyte nuclear fact 98.6 1.7E-07 5.9E-12 59.7 7.3 48 21-68 32-79 (221)
73 2pij_A Prophage PFL 6 CRO; tra 98.5 1.1E-07 3.7E-12 49.3 4.3 38 24-62 5-42 (67)
74 1ic8_A Hepatocyte nuclear fact 98.5 2.1E-07 7.2E-12 58.3 5.5 49 19-67 29-77 (194)
75 2hin_A GP39, repressor protein 98.3 1.6E-06 5.4E-11 46.2 5.1 49 27-77 5-53 (71)
76 2l0k_A Stage III sporulation p 98.2 1.2E-06 4.2E-11 48.9 3.6 54 23-76 10-64 (93)
77 2cw1_A SN4M; lambda CRO fold, 98.1 6E-06 2E-10 43.2 4.3 36 24-61 6-41 (65)
78 1zs4_A Regulatory protein CII; 98.0 1.1E-05 3.7E-10 44.2 4.1 43 32-78 23-65 (83)
79 1jhf_A LEXA repressor; LEXA SO 98.0 8.7E-06 3E-10 50.3 4.2 34 22-55 12-48 (202)
80 1xwr_A Regulatory protein CII; 97.9 6.2E-07 2.1E-11 50.5 -1.2 48 29-78 19-66 (97)
81 2ao9_A Phage protein; structur 97.7 4.5E-05 1.5E-09 46.2 3.8 38 33-72 48-86 (155)
82 2x48_A CAG38821; archeal virus 97.6 0.0002 6.9E-09 35.3 4.9 31 24-55 23-53 (55)
83 2hsg_A Glucose-resistance amyl 97.5 0.00028 9.5E-09 45.8 6.6 46 33-78 2-50 (332)
84 1qpz_A PURA, protein (purine n 97.5 0.00028 9.6E-09 46.0 6.4 45 34-78 1-48 (340)
85 3kjx_A Transcriptional regulat 97.5 0.00029 1E-08 46.0 6.1 48 31-78 8-58 (344)
86 1tc3_C Protein (TC3 transposas 97.4 0.00035 1.2E-08 33.0 4.1 26 31-56 19-44 (51)
87 1jhg_A Trp operon repressor; c 97.3 0.00043 1.5E-08 39.1 4.6 41 33-73 58-98 (101)
88 3h5t_A Transcriptional regulat 97.3 0.00033 1.1E-08 46.1 4.4 47 31-77 7-57 (366)
89 1jko_C HIN recombinase, DNA-in 97.2 0.00053 1.8E-08 32.8 4.1 32 24-56 13-44 (52)
90 2w7n_A TRFB transcriptional re 97.0 0.00062 2.1E-08 38.4 3.4 27 29-55 30-56 (101)
91 2ovg_A Phage lambda CRO; trans 97.0 0.0007 2.4E-08 35.3 3.3 32 25-58 7-38 (66)
92 2o20_A Catabolite control prot 97.0 0.00012 4E-09 47.7 0.0 46 32-77 4-52 (332)
93 1j9i_A GPNU1 DBD;, terminase s 96.9 0.00069 2.4E-08 35.1 2.5 23 34-56 3-25 (68)
94 3dbi_A Sugar-binding transcrip 96.8 0.00021 7.2E-09 46.5 0.0 45 33-77 3-50 (338)
95 2csf_A DNA-binding protein SAT 96.8 0.0046 1.6E-07 34.6 5.3 59 22-80 23-88 (101)
96 3h5o_A Transcriptional regulat 96.7 0.00024 8.1E-09 46.3 0.0 46 32-77 3-51 (339)
97 1x3u_A Transcriptional regulat 96.6 0.0096 3.3E-07 31.0 5.8 46 31-76 29-78 (79)
98 3e3m_A Transcriptional regulat 96.6 0.00035 1.2E-08 45.8 0.0 47 31-77 10-59 (355)
99 3jvd_A Transcriptional regulat 96.6 0.00035 1.2E-08 45.6 0.0 47 32-78 5-54 (333)
100 3me5_A Cytosine-specific methy 96.5 0.0049 1.7E-07 43.1 5.5 52 23-76 21-81 (482)
101 3ctp_A Periplasmic binding pro 96.5 0.00043 1.5E-08 44.9 0.0 44 34-77 3-49 (330)
102 3e7l_A Transcriptional regulat 96.5 0.0082 2.8E-07 30.5 4.9 34 22-55 21-54 (63)
103 2jn6_A Protein CGL2762, transp 96.5 0.0029 9.9E-08 34.6 3.4 23 33-55 23-45 (97)
104 1jye_A Lactose operon represso 96.5 0.00045 1.5E-08 45.3 0.0 45 33-77 3-50 (349)
105 1qgp_A Protein (double strande 96.4 0.0048 1.6E-07 32.8 4.0 32 23-54 18-52 (77)
106 2elh_A CG11849-PA, LD40883P; s 96.4 0.0053 1.8E-07 33.1 4.1 24 32-55 37-60 (87)
107 2htj_A P fimbrial regulatory p 96.4 0.0085 2.9E-07 31.7 4.7 32 24-55 5-36 (81)
108 1qbj_A Protein (double-strande 96.3 0.01 3.5E-07 31.9 4.7 32 23-54 14-48 (81)
109 1umq_A Photosynthetic apparatu 96.2 0.012 4.1E-07 31.7 4.8 34 22-55 43-76 (81)
110 2glo_A Brinker CG9653-PA; prot 96.2 0.0089 3E-07 29.9 4.1 25 31-55 19-47 (59)
111 3bil_A Probable LACI-family tr 96.1 0.00087 3E-08 43.9 0.0 45 33-77 8-55 (348)
112 1z4h_A TORI, TOR inhibition pr 96.1 0.0021 7E-08 33.1 1.4 29 33-61 10-38 (66)
113 1g2h_A Transcriptional regulat 96.1 0.0081 2.8E-07 30.4 3.6 33 22-55 23-55 (61)
114 1hlv_A CENP-B, major centromer 96.1 0.012 4.1E-07 33.5 4.8 35 23-57 15-49 (131)
115 2p7v_B Sigma-70, RNA polymeras 96.1 0.0072 2.4E-07 30.9 3.4 24 32-55 24-47 (68)
116 1e3o_C Octamer-binding transcr 96.0 0.023 8E-07 34.1 6.0 45 22-68 13-63 (160)
117 1pdn_C Protein (PRD paired); p 96.0 0.014 4.9E-07 32.5 4.8 25 31-55 31-55 (128)
118 2jml_A DNA binding domain/tran 96.0 0.0048 1.7E-07 32.9 2.6 23 33-55 5-27 (81)
119 1u78_A TC3 transposase, transp 96.0 0.014 5E-07 33.2 4.8 25 31-55 20-44 (141)
120 2heo_A Z-DNA binding protein 1 96.0 0.012 4E-07 30.4 3.9 33 23-55 14-47 (67)
121 2o8x_A Probable RNA polymerase 95.9 0.022 7.4E-07 28.8 4.8 28 28-55 26-53 (70)
122 2jpc_A SSRB; DNA binding prote 95.9 0.0067 2.3E-07 30.1 2.7 44 30-73 10-57 (61)
123 2xsd_C POU domain, class 3, tr 95.9 0.03 1E-06 33.8 5.9 46 22-69 19-70 (164)
124 1au7_A Protein PIT-1, GHF-1; c 95.9 0.022 7.4E-07 33.8 5.2 46 22-69 9-60 (146)
125 1r71_A Transcriptional repress 95.9 0.019 6.5E-07 35.2 5.1 33 22-55 42-74 (178)
126 1je8_A Nitrate/nitrite respons 95.9 0.031 1.1E-06 29.6 5.4 43 31-73 34-80 (82)
127 3hug_A RNA polymerase sigma fa 95.8 0.021 7.3E-07 30.8 4.8 29 27-55 47-75 (92)
128 1ntc_A Protein (nitrogen regul 95.8 0.013 4.4E-07 31.9 3.8 34 22-55 53-86 (91)
129 2vz4_A Tipal, HTH-type transcr 95.8 0.0084 2.9E-07 33.6 3.1 23 33-55 1-23 (108)
130 1k78_A Paired box protein PAX5 95.8 0.019 6.5E-07 33.4 4.8 25 31-55 46-70 (149)
131 2dk5_A DNA-directed RNA polyme 95.8 0.012 4.1E-07 32.3 3.6 34 22-55 23-58 (91)
132 1ku3_A Sigma factor SIGA; heli 95.8 0.026 9.1E-07 29.1 4.8 24 32-55 29-52 (73)
133 1xn7_A Hypothetical protein YH 95.7 0.022 7.5E-07 30.4 4.4 32 23-54 6-37 (78)
134 2w48_A Sorbitol operon regulat 95.7 0.017 5.9E-07 37.8 4.8 33 23-55 11-43 (315)
135 3ulq_B Transcriptional regulat 95.7 0.038 1.3E-06 30.0 5.4 24 32-55 43-66 (90)
136 2ox6_A Hypothetical protein SO 95.7 0.15 5.2E-06 29.9 8.3 45 19-63 6-50 (166)
137 1vz0_A PARB, chromosome partit 95.6 0.022 7.6E-07 36.1 5.0 34 22-56 124-157 (230)
138 1x2l_A CUT-like 2, homeobox pr 95.6 0.032 1.1E-06 31.4 5.0 53 22-74 23-82 (101)
139 1wh6_A CUT-like 2, homeobox pr 95.6 0.076 2.6E-06 29.8 6.5 59 22-80 23-88 (101)
140 1fse_A GERE; helix-turn-helix 95.5 0.016 5.6E-07 29.6 3.4 43 31-73 24-70 (74)
141 3kor_A Possible Trp repressor; 95.5 0.031 1.1E-06 32.3 4.7 26 31-56 73-98 (119)
142 2o4a_A DNA-binding protein SAT 95.5 0.019 6.5E-07 31.8 3.6 60 21-80 12-78 (93)
143 1eto_A FIS, factor for inversi 95.4 0.038 1.3E-06 30.7 4.9 34 22-55 60-93 (98)
144 1tty_A Sigma-A, RNA polymerase 95.4 0.041 1.4E-06 29.4 4.8 24 32-55 37-60 (87)
145 1sfx_A Conserved hypothetical 95.4 0.037 1.3E-06 29.8 4.7 34 22-55 23-56 (109)
146 1r8d_A Transcription activator 95.4 0.02 7E-07 32.0 3.7 22 34-55 3-24 (109)
147 2d1h_A ST1889, 109AA long hypo 95.3 0.022 7.4E-07 30.9 3.7 32 24-55 26-58 (109)
148 2k27_A Paired box protein PAX- 95.3 0.019 6.4E-07 33.8 3.6 25 31-55 39-63 (159)
149 2rn7_A IS629 ORFA; helix, all 95.3 0.004 1.4E-07 34.6 0.6 22 34-55 31-52 (108)
150 3r0a_A Putative transcriptiona 95.3 0.023 8E-07 32.4 3.8 33 22-54 29-63 (123)
151 1oyi_A Double-stranded RNA-bin 95.3 0.019 6.4E-07 31.1 3.1 31 23-54 21-51 (82)
152 3c57_A Two component transcrip 95.2 0.05 1.7E-06 29.6 4.8 25 31-55 40-64 (95)
153 1s7o_A Hypothetical UPF0122 pr 95.2 0.052 1.8E-06 30.7 5.0 28 28-55 33-60 (113)
154 2k02_A Ferrous iron transport 95.1 0.028 9.4E-07 30.7 3.6 32 23-54 6-37 (87)
155 3cuo_A Uncharacterized HTH-typ 95.0 0.019 6.6E-07 30.8 2.8 32 24-55 29-60 (99)
156 2o3f_A Putative HTH-type trans 95.0 0.058 2E-06 30.4 4.9 35 32-66 38-72 (111)
157 2cfx_A HTH-type transcriptiona 95.0 0.049 1.7E-06 31.6 4.7 32 23-54 9-40 (144)
158 3d1n_I POU domain, class 6, tr 95.0 0.21 7.2E-06 29.5 7.5 45 22-68 10-60 (151)
159 2rnj_A Response regulator prot 94.9 0.037 1.3E-06 29.8 3.8 43 31-73 42-88 (91)
160 1wiz_A DNA-binding protein SAT 94.9 0.047 1.6E-06 30.7 4.2 60 21-80 22-88 (101)
161 3l1p_A POU domain, class 5, tr 94.9 0.16 5.5E-06 30.2 6.9 46 22-69 16-67 (155)
162 1p4w_A RCSB; solution structur 94.9 0.075 2.6E-06 29.4 5.1 44 31-74 47-94 (99)
163 2jt1_A PEFI protein; solution 94.9 0.044 1.5E-06 29.2 3.9 24 32-55 23-46 (77)
164 2w25_A Probable transcriptiona 94.8 0.054 1.9E-06 31.5 4.6 33 22-54 10-42 (150)
165 3frw_A Putative Trp repressor 94.8 0.086 2.9E-06 29.9 5.1 34 22-55 46-80 (107)
166 2p5k_A Arginine repressor; DNA 94.8 0.069 2.4E-06 26.5 4.4 27 29-55 15-46 (64)
167 2cg4_A Regulatory protein ASNC 94.8 0.056 1.9E-06 31.6 4.6 33 22-54 11-43 (152)
168 2pg4_A Uncharacterized protein 94.7 0.047 1.6E-06 29.4 3.9 29 26-54 22-52 (95)
169 2p5v_A Transcriptional regulat 94.7 0.06 2.1E-06 31.8 4.6 33 22-54 13-45 (162)
170 1ub9_A Hypothetical protein PH 94.7 0.035 1.2E-06 29.7 3.3 32 24-55 21-52 (100)
171 2dbb_A Putative HTH-type trans 94.7 0.06 2E-06 31.4 4.6 33 22-54 12-44 (151)
172 1q06_A Transcriptional regulat 94.7 0.047 1.6E-06 31.8 4.0 23 34-56 1-23 (135)
173 1xsv_A Hypothetical UPF0122 pr 94.7 0.076 2.6E-06 29.9 4.8 28 28-55 36-63 (113)
174 1y0u_A Arsenical resistance op 94.6 0.079 2.7E-06 28.6 4.6 30 24-55 36-65 (96)
175 3bpv_A Transcriptional regulat 94.6 0.068 2.3E-06 30.1 4.5 34 22-55 32-65 (138)
176 3hh0_A Transcriptional regulat 94.5 0.045 1.5E-06 32.4 3.7 25 32-56 3-27 (146)
177 3bdd_A Regulatory protein MARR 94.5 0.078 2.7E-06 29.9 4.7 34 22-55 34-67 (142)
178 3nrv_A Putative transcriptiona 94.5 0.066 2.3E-06 30.6 4.4 34 22-55 43-76 (148)
179 3iwf_A Transcription regulator 94.5 0.051 1.7E-06 30.6 3.7 37 28-64 30-66 (107)
180 3ech_A MEXR, multidrug resista 94.5 0.046 1.6E-06 31.2 3.6 33 22-54 40-72 (142)
181 3g3z_A NMB1585, transcriptiona 94.5 0.08 2.7E-06 30.1 4.7 34 22-55 34-67 (145)
182 2cyy_A Putative HTH-type trans 94.4 0.078 2.7E-06 30.9 4.7 33 22-54 10-42 (151)
183 2pn6_A ST1022, 150AA long hypo 94.4 0.051 1.7E-06 31.6 3.7 32 23-54 7-38 (150)
184 1r1u_A CZRA, repressor protein 94.4 0.089 3E-06 28.9 4.6 31 24-55 31-61 (106)
185 2e1c_A Putative HTH-type trans 94.4 0.049 1.7E-06 32.8 3.7 33 22-54 30-62 (171)
186 3t72_q RNA polymerase sigma fa 94.4 0.042 1.4E-06 30.5 3.2 25 32-56 38-62 (99)
187 2ia0_A Putative HTH-type trans 94.4 0.079 2.7E-06 31.8 4.6 33 22-54 20-52 (171)
188 2nnn_A Probable transcriptiona 94.3 0.085 2.9E-06 29.6 4.6 34 22-55 41-74 (140)
189 1u2w_A CADC repressor, cadmium 94.3 0.055 1.9E-06 30.7 3.7 32 24-55 47-78 (122)
190 3mzy_A RNA polymerase sigma-H 94.3 0.045 1.5E-06 31.5 3.4 27 29-55 120-146 (164)
191 1i1g_A Transcriptional regulat 94.3 0.091 3.1E-06 30.1 4.6 32 23-54 8-39 (141)
192 2hr3_A Probable transcriptiona 94.3 0.087 3E-06 30.0 4.5 34 22-55 38-72 (147)
193 3oop_A LIN2960 protein; protei 94.2 0.062 2.1E-06 30.6 3.9 33 22-54 40-72 (143)
194 3gp4_A Transcriptional regulat 94.2 0.037 1.3E-06 32.6 2.9 23 33-55 2-24 (142)
195 2wte_A CSA3; antiviral protein 94.2 0.082 2.8E-06 33.8 4.7 33 22-54 155-187 (244)
196 2oz6_A Virulence factor regula 94.2 0.041 1.4E-06 32.9 3.2 23 33-55 164-186 (207)
197 2oqg_A Possible transcriptiona 94.2 0.083 2.8E-06 29.0 4.3 32 23-55 25-56 (114)
198 2a61_A Transcriptional regulat 94.1 0.11 3.7E-06 29.4 4.7 34 22-55 36-69 (145)
199 2rdp_A Putative transcriptiona 94.1 0.1 3.6E-06 29.7 4.7 34 22-55 45-78 (150)
200 2lkp_A Transcriptional regulat 94.1 0.12 4.2E-06 28.7 4.8 30 24-54 37-66 (119)
201 2fa5_A Transcriptional regulat 94.1 0.11 3.7E-06 30.1 4.7 34 22-55 52-85 (162)
202 3ryp_A Catabolite gene activat 94.0 0.048 1.7E-06 32.6 3.2 23 33-55 167-189 (210)
203 1on2_A Transcriptional regulat 94.0 0.1 3.5E-06 29.8 4.5 26 29-54 18-43 (142)
204 2zkz_A Transcriptional repress 94.0 0.083 2.8E-06 28.8 3.9 29 27-55 35-63 (99)
205 3mky_B Protein SOPB; partition 94.0 0.092 3.1E-06 32.6 4.4 35 22-56 30-65 (189)
206 3bro_A Transcriptional regulat 94.0 0.11 3.8E-06 29.2 4.6 33 22-54 37-71 (141)
207 2zcw_A TTHA1359, transcription 94.0 0.051 1.7E-06 32.6 3.2 23 33-55 146-168 (202)
208 4hbl_A Transcriptional regulat 94.0 0.068 2.3E-06 30.8 3.6 34 22-55 44-77 (149)
209 2fbi_A Probable transcriptiona 93.9 0.079 2.7E-06 29.9 3.9 34 22-55 39-72 (142)
210 2fbh_A Transcriptional regulat 93.9 0.083 2.8E-06 29.9 3.9 34 22-55 40-74 (146)
211 2eth_A Transcriptional regulat 93.9 0.12 4E-06 29.8 4.6 33 22-54 47-79 (154)
212 2f07_A YVDT; helix-turn-helix, 93.8 0.085 2.9E-06 31.3 4.0 34 32-65 29-62 (197)
213 1jgs_A Multiple antibiotic res 93.8 0.13 4.4E-06 28.9 4.6 34 22-55 37-70 (138)
214 1j5y_A Transcriptional regulat 93.8 0.097 3.3E-06 31.8 4.3 31 24-54 26-57 (187)
215 3s2w_A Transcriptional regulat 93.8 0.075 2.6E-06 30.9 3.7 33 22-54 53-85 (159)
216 3eco_A MEPR; mutlidrug efflux 93.8 0.079 2.7E-06 29.9 3.7 33 22-54 34-68 (139)
217 3dv8_A Transcriptional regulat 93.8 0.061 2.1E-06 32.4 3.4 23 33-55 169-191 (220)
218 3iwz_A CAP-like, catabolite ac 93.7 0.058 2E-06 32.7 3.2 22 34-55 188-209 (230)
219 3b02_A Transcriptional regulat 93.7 0.049 1.7E-06 32.5 2.8 23 33-55 139-161 (195)
220 3e97_A Transcriptional regulat 93.7 0.059 2E-06 32.8 3.2 24 32-55 174-197 (231)
221 3i4p_A Transcriptional regulat 93.7 0.076 2.6E-06 31.5 3.6 32 23-54 7-38 (162)
222 3kkc_A TETR family transcripti 93.7 0.035 1.2E-06 32.2 2.0 40 33-72 32-71 (177)
223 2qww_A Transcriptional regulat 93.7 0.083 2.9E-06 30.3 3.7 34 22-55 44-77 (154)
224 3mn2_A Probable ARAC family tr 93.7 0.14 4.6E-06 28.1 4.4 31 32-62 17-47 (108)
225 2fmy_A COOA, carbon monoxide o 93.6 0.067 2.3E-06 32.4 3.4 24 32-55 166-189 (220)
226 4ev0_A Transcription regulator 93.6 0.063 2.2E-06 32.3 3.2 23 33-55 163-185 (216)
227 1lj9_A Transcriptional regulat 93.6 0.089 3.1E-06 29.8 3.7 33 22-54 32-64 (144)
228 3d0s_A Transcriptional regulat 93.6 0.073 2.5E-06 32.3 3.5 23 33-55 177-199 (227)
229 1ft9_A Carbon monoxide oxidati 93.6 0.069 2.4E-06 32.5 3.4 22 33-54 163-184 (222)
230 1wh8_A CUT-like 2, homeobox pr 93.5 0.18 6.1E-06 28.8 4.8 55 22-76 33-94 (111)
231 3kp7_A Transcriptional regulat 93.5 0.068 2.3E-06 30.7 3.1 33 22-55 41-73 (151)
232 2qvo_A Uncharacterized protein 93.5 0.057 2E-06 29.1 2.6 22 34-55 31-52 (95)
233 1z05_A Transcriptional regulat 93.5 0.13 4.4E-06 34.9 4.9 34 22-55 42-75 (429)
234 3k0l_A Repressor protein; heli 93.5 0.08 2.7E-06 30.9 3.4 33 22-54 49-81 (162)
235 3qkx_A Uncharacterized HTH-typ 93.5 0.04 1.4E-06 32.0 2.1 26 33-58 28-53 (188)
236 2zhg_A Redox-sensitive transcr 93.5 0.092 3.2E-06 31.2 3.7 24 32-55 10-33 (154)
237 1z6r_A MLC protein; transcript 93.4 0.11 3.7E-06 34.9 4.4 33 22-54 19-51 (406)
238 1q1h_A TFE, transcription fact 93.4 0.15 5E-06 28.1 4.3 33 22-54 21-54 (110)
239 2r0q_C Putative transposon TN5 93.4 0.22 7.4E-06 30.6 5.4 28 31-58 173-200 (209)
240 3bqz_B HTH-type transcriptiona 93.4 0.043 1.5E-06 32.1 2.1 27 32-58 21-47 (194)
241 3gpv_A Transcriptional regulat 93.4 0.1 3.4E-06 30.8 3.7 25 32-56 15-39 (148)
242 2pex_A Transcriptional regulat 93.4 0.1 3.4E-06 30.0 3.7 34 22-55 50-83 (153)
243 1zyb_A Transcription regulator 93.4 0.071 2.4E-06 32.7 3.2 23 33-55 186-208 (232)
244 3bj6_A Transcriptional regulat 93.3 0.1 3.5E-06 29.8 3.7 34 22-55 43-76 (152)
245 3lsg_A Two-component response 93.3 0.11 3.7E-06 28.3 3.6 25 33-57 19-43 (103)
246 2nyx_A Probable transcriptiona 93.3 0.11 3.8E-06 30.5 3.9 34 22-55 48-81 (168)
247 1u8b_A ADA polyprotein; protei 93.3 0.18 6E-06 28.7 4.6 34 31-64 91-124 (133)
248 2hoe_A N-acetylglucosamine kin 93.3 0.11 3.7E-06 34.7 4.2 30 24-54 25-54 (380)
249 3oio_A Transcriptional regulat 93.3 0.16 5.6E-06 28.0 4.4 31 32-62 22-52 (113)
250 2gxg_A 146AA long hypothetical 93.3 0.12 4E-06 29.3 3.8 32 22-54 40-71 (146)
251 2k9s_A Arabinose operon regula 93.3 0.24 8.1E-06 27.1 5.0 26 32-57 19-44 (107)
252 1or7_A Sigma-24, RNA polymeras 93.3 0.17 6E-06 30.0 4.7 28 28-55 151-178 (194)
253 3la7_A Global nitrogen regulat 93.2 0.078 2.7E-06 32.8 3.2 24 32-55 192-215 (243)
254 3cjn_A Transcriptional regulat 93.2 0.11 3.7E-06 30.2 3.7 34 22-55 55-88 (162)
255 1gdt_A GD resolvase, protein ( 93.2 0.14 4.9E-06 30.8 4.3 34 22-56 148-181 (183)
256 1rp3_A RNA polymerase sigma fa 93.2 0.17 5.8E-06 30.9 4.7 28 28-55 198-225 (239)
257 3dkw_A DNR protein; CRP-FNR, H 93.2 0.058 2E-06 32.7 2.5 24 32-55 177-200 (227)
258 3tgn_A ADC operon repressor AD 93.2 0.12 4E-06 29.4 3.7 33 22-55 41-73 (146)
259 2d6y_A Putative TETR family re 93.1 0.059 2E-06 32.2 2.5 28 33-60 28-55 (202)
260 3egq_A TETR family transcripti 93.1 0.039 1.3E-06 31.9 1.6 26 33-58 24-49 (170)
261 3ppb_A Putative TETR family tr 93.1 0.045 1.5E-06 31.9 2.0 26 33-58 29-54 (195)
262 2gau_A Transcriptional regulat 93.1 0.092 3.1E-06 32.0 3.4 24 32-55 179-202 (232)
263 2x4h_A Hypothetical protein SS 93.1 0.19 6.4E-06 28.5 4.6 25 31-55 29-53 (139)
264 3on4_A Transcriptional regulat 93.1 0.04 1.4E-06 32.1 1.7 27 32-58 29-55 (191)
265 1s3j_A YUSO protein; structura 93.1 0.097 3.3E-06 30.0 3.4 34 22-55 40-73 (155)
266 1ojl_A Transcriptional regulat 93.1 0.15 5.3E-06 33.1 4.6 34 22-55 270-303 (304)
267 3lwj_A Putative TETR-family tr 93.1 0.046 1.6E-06 32.2 2.0 25 33-57 32-56 (202)
268 3e6c_C CPRK, cyclic nucleotide 93.1 0.084 2.9E-06 32.7 3.2 24 32-55 176-199 (250)
269 3vpr_A Transcriptional regulat 93.1 0.086 2.9E-06 31.0 3.2 27 32-58 22-48 (190)
270 4dyq_A Gene 1 protein; GP1, oc 93.1 0.077 2.6E-06 31.0 2.9 26 31-56 26-52 (140)
271 3oou_A LIN2118 protein; protei 93.0 0.13 4.4E-06 28.2 3.6 26 32-57 20-45 (108)
272 3e6m_A MARR family transcripti 93.0 0.1 3.5E-06 30.4 3.3 32 23-54 57-88 (161)
273 3fx3_A Cyclic nucleotide-bindi 93.0 0.066 2.3E-06 32.7 2.6 24 32-55 177-200 (237)
274 2rae_A Transcriptional regulat 93.0 0.078 2.7E-06 31.4 2.8 29 32-60 36-64 (207)
275 3anp_C Transcriptional repress 92.9 0.076 2.6E-06 31.5 2.8 28 32-59 28-55 (204)
276 2qtq_A Transcriptional regulat 92.9 0.069 2.4E-06 31.6 2.6 26 33-58 36-61 (213)
277 3f1b_A TETR-like transcription 92.9 0.049 1.7E-06 32.0 1.9 26 33-58 34-59 (203)
278 3lhq_A Acrab operon repressor 92.9 0.053 1.8E-06 32.1 2.0 27 32-58 33-59 (220)
279 3kcc_A Catabolite gene activat 92.9 0.093 3.2E-06 32.9 3.2 23 33-55 217-239 (260)
280 2v57_A TETR family transcripti 92.8 0.054 1.8E-06 31.7 2.0 27 32-58 31-57 (190)
281 3k2z_A LEXA repressor; winged 92.8 0.16 5.5E-06 31.0 4.2 31 25-55 14-46 (196)
282 2h09_A Transcriptional regulat 92.8 0.25 8.6E-06 28.6 4.9 27 28-54 49-75 (155)
283 3knw_A Putative transcriptiona 92.8 0.055 1.9E-06 32.1 2.0 27 32-58 33-59 (212)
284 2fq4_A Transcriptional regulat 92.8 0.072 2.5E-06 31.5 2.5 25 32-56 31-55 (192)
285 3jth_A Transcription activator 92.8 0.079 2.7E-06 28.6 2.5 23 32-54 35-57 (98)
286 2frh_A SARA, staphylococcal ac 92.8 0.069 2.4E-06 30.2 2.3 34 22-55 40-75 (127)
287 3jw4_A Transcriptional regulat 92.8 0.089 3.1E-06 30.1 2.8 33 22-54 44-78 (148)
288 3dcf_A Transcriptional regulat 92.7 0.057 1.9E-06 32.1 2.0 26 33-58 51-76 (218)
289 2zcm_A Biofilm operon icaabcd 92.7 0.064 2.2E-06 31.5 2.2 27 32-58 26-52 (192)
290 3qbm_A TETR transcriptional re 92.7 0.038 1.3E-06 32.4 1.2 27 32-58 26-52 (199)
291 3mkl_A HTH-type transcriptiona 92.7 0.31 1.1E-05 27.2 5.0 30 32-62 22-51 (120)
292 2g7s_A Transcriptional regulat 92.7 0.051 1.7E-06 31.6 1.7 27 32-58 27-53 (194)
293 2kko_A Possible transcriptiona 92.7 0.13 4.6E-06 28.4 3.4 32 23-55 29-60 (108)
294 3ljl_A Transcriptional regulat 92.6 0.079 2.7E-06 30.5 2.5 26 33-58 34-59 (156)
295 4aci_A HTH-type transcriptiona 92.6 0.055 1.9E-06 31.6 1.8 26 33-58 34-59 (191)
296 3cdh_A Transcriptional regulat 92.6 0.12 4E-06 29.8 3.2 32 23-54 47-78 (155)
297 3dpj_A Transcription regulator 92.6 0.061 2.1E-06 31.5 2.0 27 32-58 27-53 (194)
298 2dg7_A Putative transcriptiona 92.6 0.094 3.2E-06 30.9 2.8 26 33-58 27-52 (195)
299 1ku9_A Hypothetical protein MJ 92.6 0.13 4.4E-06 29.1 3.3 31 24-54 31-62 (152)
300 2oa4_A SIR5; structure, struct 92.5 0.25 8.4E-06 27.7 4.3 28 28-55 45-72 (101)
301 1yse_A DNA-binding protein SAT 92.5 0.081 2.8E-06 31.4 2.4 59 22-80 27-92 (141)
302 2jrt_A Uncharacterized protein 92.5 0.28 9.6E-06 27.0 4.5 26 30-55 46-71 (95)
303 3kz9_A SMCR; transcriptional r 92.5 0.062 2.1E-06 31.6 1.9 25 33-57 37-61 (206)
304 1z91_A Organic hydroperoxide r 92.5 0.11 3.9E-06 29.4 3.0 34 22-55 43-76 (147)
305 3bni_A Putative TETR-family tr 92.4 0.064 2.2E-06 32.7 2.0 26 33-58 63-88 (229)
306 2dg6_A Putative transcriptiona 92.4 0.12 4E-06 32.7 3.2 22 34-55 1-22 (222)
307 4fx0_A Probable transcriptiona 92.4 0.12 4.1E-06 30.1 3.1 23 33-55 52-74 (148)
308 3vp5_A Transcriptional regulat 92.4 0.066 2.3E-06 31.7 2.0 25 33-57 32-56 (189)
309 2eh3_A Transcriptional regulat 92.4 0.072 2.5E-06 31.1 2.1 27 32-58 21-47 (179)
310 3fm5_A Transcriptional regulat 92.4 0.2 6.9E-06 28.6 4.0 34 22-55 42-76 (150)
311 3hsr_A HTH-type transcriptiona 92.4 0.055 1.9E-06 30.8 1.6 32 23-54 40-71 (140)
312 1tbx_A ORF F-93, hypothetical 92.3 0.1 3.5E-06 28.1 2.6 33 23-55 12-48 (99)
313 3o60_A LIN0861 protein; PSI, M 92.3 0.11 3.6E-06 31.1 2.8 26 33-58 40-65 (185)
314 3bru_A Regulatory protein, TET 92.3 0.069 2.4E-06 31.9 2.0 26 33-58 50-75 (222)
315 1pb6_A Hypothetical transcript 92.3 0.068 2.3E-06 31.7 1.9 27 32-58 37-63 (212)
316 3vib_A MTRR; helix-turn-helix 92.3 0.069 2.4E-06 31.9 2.0 27 32-58 29-55 (210)
317 3gzi_A Transcriptional regulat 92.3 0.07 2.4E-06 31.8 2.0 26 33-58 37-62 (218)
318 3bhq_A Transcriptional regulat 92.2 0.093 3.2E-06 31.4 2.5 28 32-59 31-58 (211)
319 3dew_A Transcriptional regulat 92.2 0.12 4.1E-06 30.2 3.0 26 33-58 28-53 (206)
320 3nqo_A MARR-family transcripti 92.2 0.23 7.8E-06 29.9 4.3 34 22-55 44-79 (189)
321 2jj7_A Hemolysin II regulatory 92.2 0.084 2.9E-06 30.8 2.3 25 33-57 27-51 (186)
322 2fu4_A Ferric uptake regulatio 92.2 0.21 7.3E-06 26.0 3.7 33 23-55 21-60 (83)
323 1u78_A TC3 transposase, transp 92.2 0.35 1.2E-05 27.2 4.9 32 24-55 68-101 (141)
324 3f0c_A TETR-molecule A, transc 92.2 0.073 2.5E-06 31.7 2.0 26 33-58 31-56 (216)
325 3frq_A Repressor protein MPHR( 92.1 0.07 2.4E-06 31.4 1.8 27 32-58 27-53 (195)
326 3szt_A QCSR, quorum-sensing co 92.1 0.4 1.4E-05 30.0 5.4 43 31-73 188-234 (237)
327 3loc_A HTH-type transcriptiona 92.1 0.053 1.8E-06 32.1 1.3 26 32-57 37-62 (212)
328 4a0z_A Transcription factor FA 92.1 0.26 8.8E-06 30.3 4.4 38 24-61 17-54 (190)
329 2yve_A Transcriptional regulat 92.1 0.078 2.7E-06 31.2 2.0 25 33-57 24-48 (185)
330 3pas_A TETR family transcripti 92.1 0.052 1.8E-06 31.6 1.2 27 32-58 27-53 (195)
331 3rh2_A Hypothetical TETR-like 92.1 0.065 2.2E-06 32.0 1.7 27 32-58 22-48 (212)
332 3clo_A Transcriptional regulat 92.1 0.77 2.6E-05 28.9 6.8 43 31-73 210-256 (258)
333 3deu_A Transcriptional regulat 92.0 0.18 6.1E-06 29.7 3.5 33 22-54 56-89 (166)
334 2kfs_A Conserved hypothetical 92.0 0.13 4.5E-06 30.7 2.9 29 32-60 30-58 (148)
335 2d5v_A Hepatocyte nuclear fact 92.0 0.42 1.4E-05 28.4 5.2 53 22-74 10-68 (164)
336 3mnl_A KSTR, transcriptional r 92.0 0.057 1.9E-06 31.8 1.3 26 33-58 40-65 (203)
337 3f3x_A Transcriptional regulat 91.9 0.2 6.8E-06 28.4 3.6 33 22-55 40-72 (144)
338 2lfw_A PHYR sigma-like domain; 91.9 0.14 4.7E-06 30.0 2.9 28 28-55 104-131 (157)
339 3cwr_A Transcriptional regulat 91.9 0.06 2E-06 31.7 1.3 26 32-57 36-61 (208)
340 3c2b_A Transcriptional regulat 91.9 0.12 4.1E-06 30.9 2.7 27 32-58 34-60 (221)
341 2qwt_A Transcriptional regulat 91.9 0.077 2.6E-06 31.5 1.8 26 33-58 32-57 (196)
342 3e7q_A Transcriptional regulat 91.8 0.059 2E-06 31.9 1.3 27 32-58 33-59 (215)
343 2ibd_A Possible transcriptiona 91.8 0.088 3E-06 31.3 2.1 27 32-58 33-59 (204)
344 2fxa_A Protease production reg 91.8 0.21 7.2E-06 30.7 3.8 34 22-55 51-84 (207)
345 3cjd_A Transcriptional regulat 91.8 0.071 2.4E-06 31.8 1.6 27 32-58 31-57 (198)
346 2nx4_A Transcriptional regulat 91.8 0.092 3.2E-06 31.1 2.1 27 32-58 29-55 (194)
347 3dn7_A Cyclic nucleotide bindi 91.8 0.031 1.1E-06 33.2 0.0 25 31-55 166-190 (194)
348 2oer_A Probable transcriptiona 91.8 0.087 3E-06 31.7 2.0 26 33-58 44-69 (214)
349 2dg8_A Putative TETR-family tr 91.8 0.056 1.9E-06 31.9 1.1 26 33-58 29-54 (193)
350 1vi0_A Transcriptional regulat 91.7 0.073 2.5E-06 31.9 1.6 27 32-58 27-53 (206)
351 2hku_A A putative transcriptio 91.7 0.11 3.9E-06 31.0 2.5 27 32-58 38-64 (215)
352 3nxc_A HTH-type protein SLMA; 91.7 0.052 1.8E-06 32.2 0.9 27 32-58 44-70 (212)
353 2g3b_A Putative TETR-family tr 91.7 0.08 2.7E-06 31.8 1.8 29 32-60 22-50 (208)
354 3b81_A Transcriptional regulat 91.7 0.059 2E-06 31.7 1.2 26 32-57 30-55 (203)
355 2zb9_A Putative transcriptiona 91.7 0.078 2.7E-06 31.7 1.7 26 33-58 43-68 (214)
356 2rek_A Putative TETR-family tr 91.6 0.079 2.7E-06 31.3 1.7 25 33-57 35-59 (199)
357 4aik_A Transcriptional regulat 91.6 0.19 6.4E-06 29.3 3.3 33 23-55 35-68 (151)
358 2o7t_A Transcriptional regulat 91.5 0.082 2.8E-06 31.3 1.7 26 33-58 28-53 (199)
359 2wui_A MEXZ, transcriptional r 91.5 0.12 4.1E-06 30.9 2.5 26 32-57 30-55 (210)
360 2gen_A Probable transcriptiona 91.5 0.11 3.7E-06 30.9 2.2 27 32-58 26-52 (197)
361 1r1t_A Transcriptional repress 91.5 0.27 9.2E-06 27.9 3.8 24 31-54 57-80 (122)
362 2i10_A Putative TETR transcrip 91.5 0.18 6E-06 30.1 3.2 26 32-57 30-55 (202)
363 3mvp_A TETR/ACRR transcription 91.5 0.081 2.8E-06 31.4 1.6 26 33-58 46-71 (217)
364 3g7r_A Putative transcriptiona 91.5 0.094 3.2E-06 31.7 2.0 26 33-58 55-80 (221)
365 1okr_A MECI, methicillin resis 91.5 0.19 6.7E-06 27.9 3.2 33 22-54 13-49 (123)
366 3b73_A PHIH1 repressor-like pr 91.4 0.25 8.7E-06 27.9 3.6 33 22-54 16-50 (111)
367 2jsc_A Transcriptional regulat 91.4 0.18 6.3E-06 28.3 3.0 31 24-55 26-56 (118)
368 2hyt_A TETR-family transcripti 91.4 0.083 2.8E-06 31.3 1.6 27 32-58 31-57 (197)
369 3bja_A Transcriptional regulat 91.4 0.085 2.9E-06 29.6 1.6 33 22-54 36-68 (139)
370 2q0o_A Probable transcriptiona 91.4 0.39 1.3E-05 29.8 4.8 43 31-73 188-234 (236)
371 2qib_A TETR-family transcripti 91.3 0.084 2.9E-06 32.2 1.6 26 33-58 33-58 (231)
372 3nnr_A Transcriptional regulat 91.3 0.089 3.1E-06 31.8 1.7 26 33-58 25-50 (228)
373 2np5_A Transcriptional regulat 91.3 0.09 3.1E-06 31.4 1.7 27 32-58 28-54 (203)
374 3col_A Putative transcription 91.2 0.046 1.6E-06 31.9 0.4 25 33-57 30-54 (196)
375 3rd3_A Probable transcriptiona 91.2 0.056 1.9E-06 31.6 0.7 25 33-57 30-54 (197)
376 1uly_A Hypothetical protein PH 91.2 0.29 1E-05 30.0 4.0 31 23-54 24-54 (192)
377 3q0w_A HTH-type transcriptiona 91.2 0.092 3.1E-06 32.1 1.7 26 33-58 64-89 (236)
378 2bgc_A PRFA; bacterial infecti 91.2 0.14 4.8E-06 31.5 2.5 22 33-54 169-191 (238)
379 3v6g_A Probable transcriptiona 91.2 0.11 3.7E-06 31.5 2.0 27 32-58 33-59 (208)
380 1mkm_A ICLR transcriptional re 91.1 0.34 1.2E-05 30.5 4.4 32 24-55 13-45 (249)
381 3bjb_A Probable transcriptiona 91.1 0.12 4.2E-06 31.0 2.2 25 33-57 42-66 (207)
382 3g7d_A PHPD; non heme Fe(II) d 91.1 0.47 1.6E-05 32.2 5.1 58 22-79 5-63 (443)
383 1xmk_A Double-stranded RNA-spe 91.1 0.2 6.9E-06 26.7 2.8 33 22-54 14-47 (79)
384 3rqi_A Response regulator prot 91.1 0.53 1.8E-05 27.6 5.0 36 22-57 145-180 (184)
385 3crj_A Transcription regulator 91.1 0.072 2.5E-06 31.8 1.1 26 32-57 33-58 (199)
386 1rkt_A Protein YFIR; transcrip 91.0 0.08 2.7E-06 31.5 1.3 27 32-58 31-57 (205)
387 2id3_A Putative transcriptiona 91.0 0.11 3.9E-06 31.5 2.0 38 33-70 60-97 (225)
388 3s5r_A Transcriptional regulat 91.0 0.074 2.5E-06 31.6 1.1 26 32-57 29-54 (216)
389 2pz9_A Putative regulatory pro 90.8 0.08 2.7E-06 32.1 1.2 27 32-58 49-75 (226)
390 1b4a_A Arginine repressor; hel 90.8 0.53 1.8E-05 28.0 4.7 33 23-55 8-46 (149)
391 1zk8_A Transcriptional regulat 90.8 0.051 1.8E-06 31.6 0.3 25 33-57 28-52 (183)
392 2guh_A Putative TETR-family tr 90.8 0.17 5.9E-06 30.6 2.7 25 33-57 59-83 (214)
393 2gfn_A HTH-type transcriptiona 90.8 0.11 3.9E-06 31.2 1.8 27 32-58 28-54 (209)
394 2zcx_A SCO7815, TETR-family tr 90.8 0.12 4.1E-06 31.7 2.0 26 33-58 43-68 (231)
395 3npi_A TETR family regulatory 90.7 0.11 3.7E-06 32.0 1.7 39 32-70 37-75 (251)
396 2q24_A Putative TETR family tr 90.7 0.12 4.1E-06 30.4 1.8 26 33-58 34-59 (194)
397 2o0m_A Transcriptional regulat 90.7 0.047 1.6E-06 36.3 0.0 34 22-55 23-56 (345)
398 1sfu_A 34L protein; protein/Z- 90.7 0.12 4.1E-06 27.5 1.6 27 29-55 25-51 (75)
399 1l3l_A Transcriptional activat 90.6 0.51 1.7E-05 29.3 4.8 43 31-73 186-232 (234)
400 3uj3_X DNA-invertase; helix-tu 90.6 0.048 1.6E-06 33.2 0.0 28 31-58 156-183 (193)
401 1ui5_A A-factor receptor homol 90.6 0.14 4.8E-06 30.9 2.1 27 32-58 28-54 (215)
402 3he0_A Transcriptional regulat 90.6 0.086 2.9E-06 30.8 1.1 26 32-57 30-55 (196)
403 2bv6_A MGRA, HTH-type transcri 90.6 0.11 3.8E-06 29.4 1.6 33 22-54 40-72 (142)
404 3eup_A Transcriptional regulat 90.6 0.048 1.7E-06 32.0 0.0 27 32-58 30-56 (204)
405 2w53_A Repressor, SMet; antibi 90.5 0.086 2.9E-06 31.7 1.1 27 32-58 30-56 (219)
406 2obp_A Putative DNA-binding pr 90.4 0.72 2.5E-05 25.4 4.7 32 23-54 20-57 (96)
407 2id6_A Transcriptional regulat 90.4 0.1 3.4E-06 31.1 1.3 27 32-58 24-50 (202)
408 3g1o_A Transcriptional regulat 90.3 0.12 4.1E-06 31.9 1.7 26 33-58 63-88 (255)
409 3qao_A LMO0526 protein, MERR-l 90.3 0.36 1.2E-05 30.9 3.9 24 32-55 2-25 (249)
410 1p6r_A Penicillinase repressor 90.3 0.24 8.1E-06 25.8 2.6 34 22-55 12-49 (82)
411 3geu_A Intercellular adhesion 90.2 0.05 1.7E-06 31.8 -0.1 26 32-57 22-47 (189)
412 1z7u_A Hypothetical protein EF 90.2 0.59 2E-05 25.8 4.4 32 22-54 25-57 (112)
413 3pqk_A Biofilm growth-associat 90.0 0.39 1.3E-05 25.9 3.4 30 24-54 28-57 (102)
414 3rkx_A Biotin-[acetyl-COA-carb 90.0 0.53 1.8E-05 31.1 4.6 32 23-54 7-40 (323)
415 3jsj_A Putative TETR-family tr 90.0 0.16 5.4E-06 29.7 1.9 25 34-58 29-53 (190)
416 1t33_A Putative transcriptiona 89.9 0.24 8.3E-06 29.5 2.8 26 34-59 32-57 (224)
417 2xdn_A HTH-type transcriptiona 89.9 0.084 2.9E-06 31.5 0.7 26 32-57 30-55 (210)
418 2ras_A Transcriptional regulat 89.8 0.11 3.7E-06 30.9 1.1 26 32-57 30-55 (212)
419 1bl0_A Protein (multiple antib 89.8 0.25 8.7E-06 27.9 2.7 25 33-57 27-51 (129)
420 3szp_A Transcriptional regulat 89.8 0.74 2.5E-05 28.2 5.0 35 35-80 17-51 (291)
421 1o5l_A Transcriptional regulat 89.7 0.062 2.1E-06 32.5 0.0 25 32-56 163-187 (213)
422 2oi8_A Putative regulatory pro 89.7 0.11 3.7E-06 31.7 1.1 26 32-57 35-60 (216)
423 2hzt_A Putative HTH-type trans 89.7 0.48 1.6E-05 26.0 3.7 30 24-54 19-49 (107)
424 3bqy_A Putative TETR family tr 89.7 0.19 6.4E-06 30.6 2.1 26 32-57 21-46 (209)
425 2of7_A Putative TETR-family tr 89.6 0.32 1.1E-05 30.2 3.3 25 32-56 67-91 (260)
426 2iai_A Putative transcriptiona 89.6 0.087 3E-06 32.1 0.6 26 32-57 49-74 (230)
427 3f6o_A Probable transcriptiona 89.6 0.27 9.2E-06 27.5 2.6 29 25-54 24-52 (118)
428 2xrn_A HTH-type transcriptiona 89.6 0.32 1.1E-05 30.6 3.2 31 25-55 12-43 (241)
429 3c07_A Putative TETR-family tr 89.6 0.17 5.8E-06 32.0 2.0 26 33-58 61-86 (273)
430 4b8x_A SCO5413, possible MARR- 89.6 0.17 5.9E-06 29.2 1.8 23 33-55 51-73 (147)
431 1sgm_A Putative HTH-type trans 89.5 0.079 2.7E-06 30.8 0.3 25 32-56 25-49 (191)
432 1ixc_A CBNR, LYSR-type regulat 89.4 0.79 2.7E-05 28.3 5.0 35 35-80 17-51 (294)
433 3cdl_A Transcriptional regulat 89.4 0.16 5.3E-06 30.2 1.6 26 32-57 28-53 (203)
434 1r8e_A Multidrug-efflux transp 89.4 0.2 6.9E-06 31.8 2.2 25 32-56 4-28 (278)
435 3hta_A EBRA repressor; TETR fa 89.4 0.12 4.3E-06 31.2 1.2 25 33-57 48-72 (217)
436 2f2e_A PA1607; transcription f 89.4 0.74 2.5E-05 26.8 4.5 31 23-54 28-58 (146)
437 2esn_A Probable transcriptiona 89.3 0.8 2.7E-05 28.6 5.0 35 35-80 26-60 (310)
438 1y6u_A XIS, excisionase from t 89.3 0.24 8.2E-06 25.8 2.1 26 31-56 14-39 (70)
439 3hhg_A Transcriptional regulat 89.2 0.84 2.9E-05 28.3 5.0 36 34-80 18-53 (306)
440 2xpw_A Tetracycline repressor 89.2 0.19 6.4E-06 30.6 1.9 27 33-59 23-49 (207)
441 2opt_A Actii protein; helical 89.2 0.28 9.6E-06 30.5 2.7 26 33-58 26-51 (234)
442 3hrs_A Metalloregulator SCAR; 89.1 0.4 1.4E-05 29.7 3.4 24 32-55 19-42 (214)
443 2fbq_A Probable transcriptiona 88.9 0.23 7.9E-06 30.3 2.2 27 32-58 26-52 (235)
444 3qp6_A CVIR transcriptional re 88.8 1.1 3.6E-05 28.6 5.3 44 31-74 210-257 (265)
445 1l9z_H Sigma factor SIGA; heli 88.7 0.71 2.4E-05 31.9 4.7 25 32-56 394-418 (438)
446 2hyj_A Putative TETR-family tr 88.6 0.13 4.4E-06 30.7 0.9 26 32-57 31-56 (200)
447 3boq_A Transcriptional regulat 88.6 0.13 4.3E-06 29.7 0.8 33 22-54 50-83 (160)
448 2hxi_A Putative transcriptiona 88.4 0.32 1.1E-05 30.3 2.6 26 33-58 49-74 (241)
449 3u2r_A Regulatory protein MARR 88.4 0.24 8.1E-06 29.0 1.9 34 22-55 49-84 (168)
450 1u3e_M HNH homing endonuclease 88.2 0.52 1.8E-05 28.3 3.4 25 34-58 136-160 (174)
451 4ich_A Transcriptional regulat 88.2 0.21 7.2E-06 32.0 1.7 27 32-58 139-165 (311)
452 2ijl_A AGR_C_4647P, molybdenum 88.2 1 3.5E-05 26.2 4.5 35 35-80 40-74 (135)
453 1iuf_A Centromere ABP1 protein 88.1 0.12 3.9E-06 30.3 0.4 26 31-56 28-59 (144)
454 3cta_A Riboflavin kinase; stru 88.1 0.38 1.3E-05 29.9 2.8 23 33-55 27-49 (230)
455 2k4b_A Transcriptional regulat 87.9 0.65 2.2E-05 25.5 3.4 34 22-55 38-75 (99)
456 2g7g_A RHA04620, putative tran 87.9 0.32 1.1E-05 29.5 2.3 25 33-57 29-53 (213)
457 1sd4_A Penicillinase repressor 87.8 0.53 1.8E-05 26.1 3.1 33 22-54 13-49 (126)
458 3fxq_A LYSR type regulator of 87.7 1.2 4E-05 27.9 5.0 35 35-80 18-52 (305)
459 3aqt_A Bacterial regulatory pr 87.7 0.055 1.9E-06 33.4 -1.3 26 33-58 66-91 (245)
460 1bia_A BIRA bifunctional prote 87.7 0.57 2E-05 30.8 3.6 31 24-54 10-40 (321)
461 1l0o_C Sigma factor; bergerat 87.7 0.1 3.6E-06 31.8 0.0 27 29-55 210-236 (243)
462 1v4r_A Transcriptional repress 87.6 0.28 9.5E-06 26.7 1.8 21 35-55 37-57 (102)
463 1z0x_A Transcriptional regulat 87.6 0.2 7E-06 30.5 1.3 26 33-58 26-51 (220)
464 2b0l_A GTP-sensing transcripti 87.5 0.59 2E-05 25.8 3.1 19 35-53 45-63 (102)
465 4hku_A LMO2814 protein, TETR t 87.3 0.076 2.6E-06 31.1 -0.8 26 32-57 26-51 (178)
466 1rr7_A Middle operon regulator 87.3 0.84 2.9E-05 26.4 3.8 25 31-55 90-114 (129)
467 2qko_A Possible transcriptiona 87.3 0.21 7.2E-06 29.8 1.2 24 33-56 48-71 (215)
468 1k78_A Paired box protein PAX5 87.3 1.6 5.4E-05 25.0 5.0 34 23-56 97-141 (149)
469 2iu5_A DHAS, YCEG, HTH-type dh 87.2 0.08 2.8E-06 31.3 -0.7 26 33-58 33-58 (195)
470 2og0_A Excisionase; protein-DN 87.0 0.43 1.5E-05 23.4 2.1 25 34-58 3-29 (52)
471 3ni7_A Bacterial regulatory pr 86.9 0.31 1.1E-05 29.5 1.9 25 33-57 27-51 (213)
472 3him_A Probable transcriptiona 86.8 0.048 1.7E-06 32.2 -1.9 26 32-57 35-60 (211)
473 4ham_A LMO2241 protein; struct 86.7 0.59 2E-05 26.7 2.9 19 35-53 40-58 (134)
474 2y2z_A SIM16, SIMR, putative r 86.7 0.29 9.9E-06 31.1 1.7 26 32-57 46-71 (267)
475 3nrg_A TETR family transcripti 86.6 0.065 2.2E-06 31.8 -1.3 25 33-57 33-57 (217)
476 2o0y_A Transcriptional regulat 86.6 0.59 2E-05 29.7 3.1 25 31-55 36-60 (260)
477 3ccy_A Putative TETR-family tr 86.6 0.08 2.7E-06 31.4 -1.0 25 33-57 34-58 (203)
478 3tqn_A Transcriptional regulat 86.5 0.7 2.4E-05 25.7 3.1 20 35-54 35-54 (113)
479 2g9w_A Conserved hypothetical 86.5 0.79 2.7E-05 26.2 3.4 33 22-54 12-49 (138)
480 2g7u_A Transcriptional regulat 86.4 0.61 2.1E-05 29.5 3.1 24 32-55 28-51 (257)
481 2g7l_A TETR-family transcripti 86.2 0.23 7.9E-06 31.0 1.0 25 33-57 39-63 (243)
482 3f6v_A Possible transcriptiona 86.2 0.38 1.3E-05 28.4 1.9 24 31-54 69-92 (151)
483 2np3_A Putative TETR-family re 86.1 0.13 4.5E-06 30.7 -0.2 27 33-59 50-76 (212)
484 2fd5_A Transcriptional regulat 86.1 0.098 3.4E-06 30.4 -0.7 26 32-57 26-51 (180)
485 3on2_A Probable transcriptiona 86.0 0.055 1.9E-06 31.6 -1.9 25 33-57 32-56 (199)
486 3fiw_A Putative TETR-family tr 86.0 0.22 7.5E-06 30.4 0.8 25 33-57 45-69 (211)
487 2vn2_A DNAD, chromosome replic 86.0 0.64 2.2E-05 26.5 2.7 24 32-55 50-73 (128)
488 3isp_A HTH-type transcriptiona 85.8 1.1 3.7E-05 28.0 4.0 35 35-80 22-56 (303)
489 3lsj_A DEST; transcriptional r 85.8 0.096 3.3E-06 31.3 -0.9 25 33-57 32-56 (220)
490 3neu_A LIN1836 protein; struct 85.8 0.78 2.7E-05 26.0 3.1 20 35-54 39-58 (125)
491 3plo_X DNA-invertase; resolvas 85.8 0.15 5.2E-06 31.0 0.0 25 32-56 157-181 (193)
492 2vpr_A Tetracycline resistance 85.7 0.19 6.7E-06 30.6 0.5 26 33-58 24-49 (207)
493 4ac0_A Tetracycline repressor 85.7 0.19 6.5E-06 30.6 0.4 39 33-71 23-61 (202)
494 2fbk_A Transcriptional regulat 85.4 0.29 1E-05 29.0 1.1 33 22-54 72-107 (181)
495 2y75_A HTH-type transcriptiona 85.3 0.76 2.6E-05 25.9 2.9 23 32-54 25-47 (129)
496 2fsw_A PG_0823 protein; alpha- 85.3 0.84 2.9E-05 24.9 3.0 30 24-54 30-60 (107)
497 3gbg_A TCP pilus virulence reg 85.3 2.8 9.6E-05 26.2 5.8 31 32-63 184-214 (276)
498 1fx7_A Iron-dependent represso 85.2 1.2 4.2E-05 27.6 4.0 23 32-54 21-45 (230)
499 3mq0_A Transcriptional repress 84.9 0.59 2E-05 30.0 2.5 33 23-55 34-67 (275)
500 3r4k_A Transcriptional regulat 84.8 0.43 1.5E-05 30.3 1.8 24 32-55 20-43 (260)
No 1
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.75 E-value=7.4e-18 Score=96.74 Aligned_cols=76 Identities=30% Similarity=0.488 Sum_probs=66.7
Q ss_pred chhhhhhhccCCCCCCC--------HHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Q 038591 5 GAVINMRKLDEGTEPDT--------PRQIQRARL--GKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGV 74 (82)
Q Consensus 5 ~~~~~~~~~~~~~~~~~--------~~~lk~~r~--~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv 74 (82)
..+++..+++.....+. +.+|+.+|. ..|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||
T Consensus 11 ~~~~~~~~~d~~~~~~~~~~~~~~~g~~lk~~R~~~~~glsq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v 90 (107)
T 2jvl_A 11 TEGQRLTKVDRSDDIIKPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNV 90 (107)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTC
T ss_pred CcccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCc
Confidence 34566666666555432 899999999 99999999999999999999999999999999999999999999
Q ss_pred CCcccc
Q 038591 75 KLRVKI 80 (82)
Q Consensus 75 ~~~e~~ 80 (82)
++++.+
T Consensus 91 ~~~e~~ 96 (107)
T 2jvl_A 91 KLRGAN 96 (107)
T ss_dssp BSSSSS
T ss_pred CHhhhc
Confidence 999865
No 2
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=99.75 E-value=1.1e-17 Score=88.81 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQIN--QRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~g--is~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.|.+|+.+|..+|+||.+||+.+| +|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 9 ~g~~l~~~r~~~glsq~~lA~~~g~~is~~~i~~~e~g~~~~~~~~l~~la~~l~v~~~~l 69 (71)
T 2ewt_A 9 LGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQEL 69 (71)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCcCCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 389999999999999999999999 99999999999999999999999999999999863
No 3
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=99.73 E-value=1.3e-17 Score=90.74 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCcc
Q 038591 20 DTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENG-KAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 20 ~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g-~~~p~~~~~~~la~~lgv~~~e 78 (82)
.++.+|+.+|+.+||||.+||+.+|||+++|++||+| ...|+.+.+.+||++|||++++
T Consensus 10 ~~~~~ik~~R~~~gltq~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~ 69 (78)
T 3qq6_A 10 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 69 (78)
T ss_dssp THHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHHTCCHHH
T ss_pred CccHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3499999999999999999999999999999999999 8999999999999999999865
No 4
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=99.73 E-value=1.2e-17 Score=91.08 Aligned_cols=58 Identities=28% Similarity=0.233 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++
T Consensus 12 ~g~~lk~~R~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~v~~~~ 69 (82)
T 3s8q_A 12 VSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVV 69 (82)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCCCBHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 4899999999999999999999999999999999999999999999999999999875
No 5
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.73 E-value=4.1e-18 Score=91.24 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=56.0
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 9 ~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l 67 (73)
T 3omt_A 9 IFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVREL 67 (73)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 36789999999999999999999999999999999999999999999999999999864
No 6
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.73 E-value=1.6e-17 Score=90.43 Aligned_cols=58 Identities=16% Similarity=0.114 Sum_probs=55.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
+.+|+.+|+..|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 14 ~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ia~~l~v~~~~l 71 (80)
T 3kz3_A 14 KAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEF 71 (80)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGT
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 7889999999999999999999999999999999999999999999999999999864
No 7
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.73 E-value=2.4e-18 Score=97.70 Aligned_cols=59 Identities=27% Similarity=0.232 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 20 DTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 20 ~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
..|.+|+.+|+..|+||.+||+.+||++++|++||+|...|+.+.+.+||++|||++++
T Consensus 28 ~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~ 86 (99)
T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVV 86 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 34999999999999999999999999999999999999999999999999999999875
No 8
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.73 E-value=2.9e-17 Score=87.55 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++||+++++.
T Consensus 14 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~l~~~l~~~~~~l 72 (74)
T 1y7y_A 14 FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPREL 72 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 38999999999999999999999999999999999999999999999999999999763
No 9
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=99.73 E-value=2.7e-17 Score=91.80 Aligned_cols=59 Identities=8% Similarity=0.132 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 20 DTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 20 ~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
+...+|+.+|+.+|+||.+||+.+|||+++|++||+|+. |+.+.+.+||++|||++++.
T Consensus 24 i~~~rLk~lR~~~glTq~eLA~~~GiS~~tis~iE~G~~-~s~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 24 VSYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNEN-VSLTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp EECHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCC-CCHHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCC-cCHHHHHHHHHHHCcCHHHH
Confidence 347899999999999999999999999999999999975 89999999999999999874
No 10
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.72 E-value=1.8e-17 Score=90.52 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+++++|++||+|...|+.+.+.+||++|||++++
T Consensus 15 ~~~~l~~~R~~~gltq~elA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~ 72 (83)
T 3f6w_A 15 LLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYA 72 (83)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 3899999999999999999999999999999999999999999999999999999875
No 11
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=99.71 E-value=4e-17 Score=91.94 Aligned_cols=59 Identities=22% Similarity=0.356 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHH----HHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQV----VSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~----i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.|.+|+.+|...|+||.+||+.+|+|+++ |++||+|...|+.+.+.+||++|||++++.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~~~l 64 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPVSYL 64 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 48899999999999999999999999999 999999999999999999999999999763
No 12
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.71 E-value=2.4e-17 Score=86.55 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=55.7
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++||+++++
T Consensus 6 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~ 63 (68)
T 2r1j_L 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDY 63 (68)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 4899999999999999999999999999999999999999999999999999999875
No 13
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.8e-17 Score=89.62 Aligned_cols=58 Identities=14% Similarity=0.260 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|..+|+||.+||+.+|||+++|++||+|...|+.+.+.+||++|||++++
T Consensus 3 ~~~~lk~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~ia~~l~v~~~~ 60 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNA 60 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHH
Confidence 3789999999999999999999999999999999999999999999999999999875
No 14
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.71 E-value=4.9e-17 Score=87.54 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=55.6
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|.. .|+.+.+.+||++|||++++
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~~l~~~~~~ 66 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHD 66 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 48899999999999999999999999999999999998 99999999999999999875
No 15
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.71 E-value=4.1e-17 Score=87.67 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||.+||+++++
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~la~~l~~~~~~ 68 (77)
T 2b5a_A 11 FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPAST 68 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 3889999999999999999999999999999999999999999999999999999865
No 16
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.70 E-value=2.9e-17 Score=94.57 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 19 PDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 19 ~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
...|.+|+.+|+.+|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++
T Consensus 8 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~ 67 (114)
T 3op9_A 8 HQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDE 67 (114)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHH
Confidence 345999999999999999999999999999999999999999999999999999999875
No 17
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=99.70 E-value=6.1e-17 Score=94.72 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.|.+|+.+|..+|+||.+||+.+|+|+++|++||+|...|+.+.+.+||.+|||++++
T Consensus 13 ~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~p~~~~l~~ia~~l~v~~~~ 70 (126)
T 3ivp_A 13 LGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDE 70 (126)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 4999999999999999999999999999999999999999999999999999999875
No 18
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.70 E-value=9.1e-17 Score=89.25 Aligned_cols=59 Identities=51% Similarity=0.858 Sum_probs=57.0
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|...|+||.+||+.+|+++++|++||+|...|+.+.+.+||++|||++++.
T Consensus 14 ~~~~l~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~la~~l~v~~~~l 72 (91)
T 1x57_A 14 VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGK 72 (91)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSST
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 49999999999999999999999999999999999999999999999999999999884
No 19
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.70 E-value=4.6e-17 Score=87.18 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=55.7
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++
T Consensus 6 ~~~~l~~~r~~~gls~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~ 63 (76)
T 1adr_A 6 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDY 63 (76)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 4899999999999999999999999999999999999999999999999999999865
No 20
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.70 E-value=7.2e-17 Score=90.28 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=56.1
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 10 ~~~~lk~~r~~~glsq~~lA~~~gis~~~is~~e~G~~~p~~~~l~~ia~~l~v~~~~l 68 (94)
T 2kpj_A 10 FSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDL 68 (94)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 38999999999999999999999999999999999999999999999999999998753
No 21
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=99.69 E-value=6.5e-17 Score=93.40 Aligned_cols=59 Identities=25% Similarity=0.196 Sum_probs=56.4
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.|.+|+.+|+..|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 22 ~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~l 80 (114)
T 3vk0_A 22 LAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQL 80 (114)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHTTTCCCCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHH
Confidence 39999999999999999999999999999999999999999999999999999998753
No 22
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=99.69 E-value=9.2e-17 Score=88.75 Aligned_cols=57 Identities=21% Similarity=0.213 Sum_probs=54.5
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLR 77 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~ 77 (82)
.+.+|+.+|+..||||.+||+.+|+|+++|++||+|...|+.+.+.+||++||++..
T Consensus 15 ~g~~l~~~R~~~gltq~elA~~~gis~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~ 71 (86)
T 3eus_A 15 LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLDV 71 (86)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcH
Confidence 489999999999999999999999999999999999999999999999999999653
No 23
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=99.69 E-value=1.1e-16 Score=91.75 Aligned_cols=58 Identities=17% Similarity=0.174 Sum_probs=55.1
Q ss_pred CCHHHHHH-HHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCc
Q 038591 20 DTPRQIQR-ARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLR 77 (82)
Q Consensus 20 ~~~~~lk~-~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~ 77 (82)
..|..|+. +|+..|+||.+||+.+|||+++|++||+|+..|+.+.+.+||++|||+++
T Consensus 13 ~pG~~Lk~~lr~~~gltq~eLA~~lGis~~~is~ie~G~~~~s~~~~~kla~~lgvs~~ 71 (104)
T 3trb_A 13 HPGEILAEELGFLDKMSANQLAKHLAIPTNRVTAILNGARSITADTALRLAKFFGTTPE 71 (104)
T ss_dssp CHHHHHHHHHHHTTSCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 34999996 89999999999999999999999999999999999999999999999975
No 24
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=99.69 E-value=2.6e-17 Score=85.96 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++||+++++
T Consensus 3 ~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~ 59 (66)
T 2xi8_A 3 INNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLED 59 (66)
T ss_dssp EECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 456899999999999999999999999999999999999999999999999999865
No 25
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=99.69 E-value=5.3e-17 Score=87.04 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++||+++++.
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ia~~l~~~~~~l 69 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQL 69 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 57889999999999999999999999999999999999999999999999999999764
No 26
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.69 E-value=7e-17 Score=93.24 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.|.+|+.+|+..|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 24 ~g~~Lk~~R~~~gltq~elA~~~gis~~~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l 82 (111)
T 3mlf_A 24 AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDI 82 (111)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 48999999999999999999999999999999999999999999999999999999863
No 27
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.68 E-value=1.5e-16 Score=88.31 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
+..|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 19 ~~~l~~~R~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ia~~l~v~~~~l 76 (92)
T 1lmb_3 19 KAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEF 76 (92)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHH
Confidence 6778888999999999999999999999999999999999999999999999998763
No 28
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.68 E-value=8.1e-17 Score=88.53 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 13 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~i~~~l~~~~~~l 71 (88)
T 2wiu_B 13 LANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLC 71 (88)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHh
Confidence 38999999999999999999999999999999999999999999999999999998764
No 29
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.68 E-value=1.1e-16 Score=86.13 Aligned_cols=61 Identities=20% Similarity=0.337 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 18 EPDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 18 ~~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
..+.|.+|+.+|+..|+||.+||+.+|||+++|++||+|...|+...+ .++.+|+++++..
T Consensus 9 ~~~~g~~lr~~R~~~gltq~elA~~~gvs~~tis~~E~G~~~p~~~~~-~l~~~l~~~p~~l 69 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPSTI-KLLRVLDKHPELL 69 (73)
T ss_dssp CCCCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHHHH-HHHHHHHHCGGGH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHH-HHHHHHCCCHHHH
Confidence 456799999999999999999999999999999999999999999987 9999999988754
No 30
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.68 E-value=1.1e-16 Score=92.47 Aligned_cols=57 Identities=23% Similarity=0.313 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
|.+|+.+|+..|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++
T Consensus 30 g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~ 86 (117)
T 3f52_A 30 GAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVAD 86 (117)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999864
No 31
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.68 E-value=2.4e-16 Score=86.44 Aligned_cols=57 Identities=21% Similarity=0.215 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e 78 (82)
+.+|+.+|...|+||.+||+.+|+|+++|++||+|.. .|+.+.+.+||++|||+++.
T Consensus 20 ~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g~~~~~~~~~l~~la~~l~~~~~~ 77 (83)
T 2a6c_A 20 LIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEI 77 (83)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHcCCCeEE
Confidence 8999999999999999999999999999999999998 59999999999999999874
No 32
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.67 E-value=1.4e-16 Score=83.86 Aligned_cols=56 Identities=23% Similarity=0.436 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.. +.+||++|||++++
T Consensus 3 ~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~-l~~la~~l~~~~~~ 58 (69)
T 1r69_A 3 SSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRF-LPELASALGVSVDW 58 (69)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCSSCTT-HHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCchH-HHHHHHHHCcCHHH
Confidence 689999999999999999999999999999999998888877 99999999999865
No 33
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=99.66 E-value=3.7e-16 Score=88.69 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 19 PDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 19 ~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
...|.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||+++.
T Consensus 17 ~~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~l~~~l~v~~~~ 76 (104)
T 3cec_A 17 IHPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRL 76 (104)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCcCCCHHHHHHHHHHHCcCHHH
Confidence 345999999999999999999999999999999999999999999999999999999863
No 34
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=99.65 E-value=5.1e-16 Score=88.54 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=55.4
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC-CCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENG-KAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g-~~~p~~~~~~~la~~lgv~~~e 78 (82)
.|.+|+.+|...|+||.+||+.+|+|+++|++||+| ...|+.+.+.+||.+|||++++
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~~~~p~~~~l~~ia~~l~v~~~~ 60 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 478999999999999999999999999999999999 8999999999999999999865
No 35
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=99.64 E-value=8.8e-16 Score=87.63 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLR 77 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~ 77 (82)
|.+|+.+|+.+||||.+||+.+|||+++|++||+|+ ++++.+.+||.+||+++.
T Consensus 38 G~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~E~G~--~~~~~l~~i~~aL~~~~~ 91 (101)
T 4ghj_A 38 GDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGK--VQLDIMIAILMALDLTEQ 91 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTC--CBHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHCCC--CCHHHHHHHHHHcCCCcc
Confidence 999999999999999999999999999999999996 567889999999999753
No 36
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.64 E-value=7.8e-16 Score=85.87 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCc
Q 038591 20 DTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLR 77 (82)
Q Consensus 20 ~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~ 77 (82)
..|.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||+++
T Consensus 8 ~~g~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~~~~~~~~~i~~~l~v~~~ 65 (94)
T 2ict_A 8 RPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQ 65 (94)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHH
T ss_pred ChhHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHH
Confidence 3599999999999999999999999999999999999999999999999999999986
No 37
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.64 E-value=4.4e-16 Score=82.31 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=52.1
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|.. .+.+||++|||++++
T Consensus 4 ~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~-~l~~i~~~l~~~~~~ 60 (71)
T 1zug_A 4 LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPR-FLFEIAMALNCDPVW 60 (71)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSCS-THHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCChH-HHHHHHHHHCCCHHH
Confidence 478999999999999999999999999999999999877654 499999999999865
No 38
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=99.63 E-value=4.4e-16 Score=92.14 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=53.9
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH------HHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQ------TVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~------~~~~~la~~lgv~~~e 78 (82)
.|.+|+.+|+.+|+||.|||+.+|+|+++|++||+|...|+. ..+.+||++||+++++
T Consensus 4 ~G~~lr~~R~~~gltq~elA~~~gis~~~is~iE~g~~~~~~~~~~~~~~l~~ia~~L~v~~~~ 67 (130)
T 3fym_A 4 VGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQ 67 (130)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCchhhhHHHHHHHHHHHhCCCHHH
Confidence 489999999999999999999999999999999999877766 6799999999999875
No 39
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.63 E-value=1.4e-15 Score=82.78 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH----HHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAK----MEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~----la~~lgv~~~e 78 (82)
+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.. |+.+|||++++
T Consensus 12 ~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~~~~~l~~~~~v~~~~ 72 (84)
T 2ef8_A 12 VQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDI 72 (84)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHccccCCCHHH
Confidence 8999999999999999999999999999999999999999765555 55556999865
No 40
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.63 E-value=6.2e-16 Score=89.63 Aligned_cols=58 Identities=10% Similarity=0.156 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVP------NQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p------~~~~~~~la~~lgv~~~e 78 (82)
.|.+|+.+|+.+|+||.+||+.+||++++|++||+|...| ....+.+||++|||++++
T Consensus 8 lG~~Lr~~R~~~glSq~eLA~~~gis~~~is~iE~G~~~~~p~~~~~~~~l~~iA~~Lgv~~~~ 71 (112)
T 2wus_R 8 LGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDE 71 (112)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCcchhHHHHHHHHHHHHhCcCHHH
Confidence 3899999999999999999999999999999999998754 356789999999999875
No 41
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.63 E-value=7.9e-16 Score=86.34 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=55.1
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHH--hCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKA--IGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~--lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++ |+|+++.
T Consensus 5 ~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~~~v~~~~ 64 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLW 64 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSST
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCHHH
Confidence 489999999999999999999999999999999999999999999999999 8888765
No 42
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=99.62 E-value=1.2e-15 Score=89.30 Aligned_cols=57 Identities=16% Similarity=0.105 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e 78 (82)
+.+|+.+|+..||||.+||+.+|+|+++|++||+|.. .|+.+.+.+||.+|||+++.
T Consensus 42 g~~L~~~R~~~glTQ~eLA~~lGis~~~Is~iE~G~~~~~s~~~l~~ia~~Lgv~~~~ 99 (120)
T 2o38_A 42 AYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEI 99 (120)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCcEE
Confidence 7899999999999999999999999999999999997 99999999999999999864
No 43
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=99.62 E-value=4e-16 Score=88.07 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=53.2
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|+..|+||.+||+.+|||+++|++||+|...|+.. +.+||++||++++.
T Consensus 31 ~~~~lk~~R~~~glsq~elA~~lgvs~~~is~~E~G~~~p~~~-~~~l~~~l~~~~~~ 87 (99)
T 2ppx_A 31 RMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQP-ARAYLKIIAVDPEG 87 (99)
T ss_dssp -CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH-HHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHH-HHHHHHHHCcCHHH
Confidence 3779999999999999999999999999999999999999988 79999999998865
No 44
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=99.61 E-value=1.1e-15 Score=87.79 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=55.8
Q ss_pred CCHHHHHH-HHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 20 DTPRQIQR-ARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 20 ~~~~~lk~-~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
..|.+|+. +|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||+++.
T Consensus 10 ~~g~~l~~~~r~~~glsq~~lA~~~gis~~~is~~e~g~~~~~~~~l~~la~~l~~~~~~ 69 (113)
T 2eby_A 10 TPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDF 69 (113)
T ss_dssp CHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHH
T ss_pred ChHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHH
Confidence 35999998 999999999999999999999999999999999999999999999999863
No 45
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.61 E-value=3.1e-15 Score=92.60 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=56.5
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|+.+|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++|||++++.
T Consensus 12 ~~~~l~~~r~~~gltq~~lA~~~gis~~~is~~e~g~~~p~~~~l~~ia~~l~v~~~~l 70 (192)
T 1y9q_A 12 IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 70 (192)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHH
Confidence 38999999999999999999999999999999999999999999999999999999764
No 46
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.61 E-value=7e-16 Score=92.43 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
|.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++||+++++
T Consensus 70 g~~L~~~R~~~glTq~elA~~lGis~s~is~~E~G~~~ps~~~l~~la~~lgv~~~~ 126 (141)
T 3kxa_A 70 GETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLE 126 (141)
T ss_dssp SCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHH
Confidence 567889999999999999999999999999999999999999999999999999875
No 47
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=99.59 E-value=5e-15 Score=91.83 Aligned_cols=59 Identities=22% Similarity=0.386 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|+.+|+||.+||+.+|+|+++|++||+|.. .|+.+.+.+||++|||++++.
T Consensus 11 ~g~~l~~~r~~~g~s~~~la~~~gis~~~ls~~e~g~~~~p~~~~l~~ia~~l~~~~~~l 70 (198)
T 2bnm_A 11 FAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGAL 70 (198)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHE
Confidence 38999999999999999999999999999999999999 999999999999999998764
No 48
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.59 E-value=3.7e-15 Score=81.72 Aligned_cols=56 Identities=16% Similarity=0.194 Sum_probs=52.9
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e 78 (82)
.|.+|+.+|+.. ||.+||+.+|||+++|++||+|.. .|+.+.+.+||++|||++++
T Consensus 17 ~g~~l~~~R~~~--sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l~v~~~~ 73 (86)
T 2ofy_A 17 LGELLRSARGDM--SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDD 73 (86)
T ss_dssp HHHHHHHHHTTS--CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHC--CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHH
Confidence 389999999988 999999999999999999999998 89999999999999999865
No 49
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=99.56 E-value=2e-15 Score=81.90 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=50.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC--CCCccc
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIG--VKLRVK 79 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lg--v~~~e~ 79 (82)
.+|+.+|+..| ||.+||+.+|||+++|++||+|...| .+.+.+||++|| |++++.
T Consensus 2 ~~l~~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~p-~~~l~~ia~~l~~~v~~~~l 58 (79)
T 3bd1_A 2 NAIDIAINKLG-SVSALAASLGVRQSAISNWRARGRVP-AERCIDIERVTNGAVICREL 58 (79)
T ss_dssp CHHHHHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCCC-GGGHHHHHHHTTTSSCHHHH
T ss_pred hHHHHHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCCC-HHHHHHHHHHHCCCCcHHHh
Confidence 36899999999 99999999999999999999998877 999999999999 887654
No 50
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=99.56 E-value=1.2e-14 Score=86.62 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=54.3
Q ss_pred CHHHHHHHHH------hCCCCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARL------GKKMSQPDLANQIN-----QRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~------~~g~s~~elA~~~g-----is~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|+ ..++||.+||+.+| +|+++|++||+|++ .|+.+.+.+||++|||+++.
T Consensus 8 ~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~V~~~y 77 (135)
T 3r1f_A 8 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAY 77 (135)
T ss_dssp HHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHTSCTHH
T ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhCCCHHH
Confidence 4899999999 47899999999999 99999999999987 89999999999999999864
No 51
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=1.6e-14 Score=92.89 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.|.+|+.+|+.+|+||.+||+.+ +|+++|++||+|...|+.+.+.+||+.|||++++.
T Consensus 6 ~g~~i~~~R~~~~~tq~~la~~~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~~~ 63 (293)
T 3u3w_A 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHF 63 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHh-CCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 48999999999999999999999 99999999999999999999999999999999753
No 52
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=99.54 E-value=2.5e-14 Score=84.10 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=54.1
Q ss_pred CHHHHHHHHH------hCCCCHHHHHHHhC-----CCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARL------GKKMSQPDLANQIN-----QRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~------~~g~s~~elA~~~g-----is~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e 78 (82)
.+++|..+++ ..++||.+||+.+| +|+++|++||+|.+ .|+.+.+.+||++|||+++.
T Consensus 6 ~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~y 75 (123)
T 3qwg_A 6 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIKAAY 75 (123)
T ss_dssp HHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHH
Confidence 4789999999 66899999999998 99999999999987 89999999999999999864
No 53
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=99.51 E-value=3.2e-14 Score=93.99 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=57.2
Q ss_pred CHHHHHHHHHh------CCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcccc
Q 038591 21 TPRQIQRARLG------KKMSQPDLANQINQRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 21 ~~~~lk~~r~~------~g~s~~elA~~~gis~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e~~ 80 (82)
.|.+|+.+|+. .|+||.|||+.+|||.++|++||+|+. .|+.+.+.+||++|+++++|++
T Consensus 7 lG~~Lr~lR~~~~~~~~~gLtqeelA~~~gvS~~~is~iE~G~~~~ps~~~l~~lA~aL~v~~~er~ 73 (292)
T 3pxp_A 7 FGKLVQALRREHRDEKGRVWTQEVLAERTQLPKRTIERIENGSLAHLDADILLRLADALELTIGERR 73 (292)
T ss_dssp HHHHHHHHHHTCBCTTSCBCCHHHHHHHHTCCHHHHHHHHHTCCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHccCccCcCCCCHHHHHHHHCcCHHHHHHHHCCCCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 38999999999 999999999999999999999999996 9999999999999999998864
No 54
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=99.48 E-value=6.1e-14 Score=82.61 Aligned_cols=60 Identities=20% Similarity=0.325 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 18 EPDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 18 ~~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
..+.+.+|+.+|+..|+||.+||+.+|+|+++|++||+|...|+... ..|++.++++++.
T Consensus 69 ~~~~~~~l~~~R~~~glsq~~la~~~g~s~~~i~~~E~g~~~p~~~~-~~l~~~~~~~p~~ 128 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPEL 128 (133)
T ss_dssp TTCCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGGG
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHccCHHH
Confidence 44568999999999999999999999999999999999999998876 7788888887764
No 55
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.47 E-value=6.7e-14 Score=92.75 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=55.0
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.|.+|+.+|+.+|+||.+||+.+ +|+++|++||+|...|+.+.+.+||+.|||++++
T Consensus 4 ig~~lk~~R~~~gltq~~la~~~-is~~~is~~E~g~~~~~~~~l~~i~~~l~v~~~~ 60 (317)
T 2awi_A 4 IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFE 60 (317)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT-SCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHh-cCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 48999999999999999999999 9999999999999999999999999999999875
No 56
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=99.45 E-value=5.9e-15 Score=96.55 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 20 DTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 20 ~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
..+.+|+.+|+.+|+||.+||+.+|||+++|++||+|...|+.+.+.+||++|||++++
T Consensus 30 ~~~~~l~~~r~~~g~t~~~la~~~g~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~ 88 (311)
T 4ich_A 30 ELRRRVRGLIHSRPGAQREFAAAIGLDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNW 88 (311)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhh
Confidence 35899999999999999999999999999999999999999999999999999999865
No 57
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=99.45 E-value=3.5e-13 Score=72.87 Aligned_cols=59 Identities=14% Similarity=0.055 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 18 EPDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 18 ~~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
...+..+|+.++..+|+|+.+||+.+|+|+++|++|+++ |.+.....||++|||++++.
T Consensus 7 ~~~~~~ri~~~l~~~glT~~~LA~~~Gvs~stls~~~~~---~~p~~~~~IA~aLgv~~~~L 65 (74)
T 1neq_A 7 RDWHRADVIAGLKKRKLSLSALSRQFGYAPTTLANALER---HWPKGEQIIANALETKPEVI 65 (74)
T ss_dssp SSCCHHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTS---SCHHHHHHHHHHTTSCHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC---CCccHHHHHHHHHCcCHHHH
Confidence 355688999999999999999999999999999999997 33444456999999999763
No 58
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.42 E-value=1.3e-14 Score=87.91 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.+.+|+.+|...|+||.+||+.+|+|+++|++||+|...|+.+.+.+||+.||+++++
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lgis~~~vs~~e~G~~~~~~~~~~~la~~~~v~~~~ 59 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVD 59 (158)
T ss_dssp ----------------------------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 3678999999999999999999999999999999999999999999999999999764
No 59
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.40 E-value=1.8e-13 Score=86.71 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.+.+|+.+|+.+|+||.+||+.+|+|+++|++||+|...|+.+.+.+||++||+++++.
T Consensus 18 ~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~g~~~p~~~~l~~ia~~l~v~~~~l 76 (236)
T 3bdn_A 18 LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEF 76 (236)
T ss_dssp HHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGGT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHh
Confidence 38899999999999999999999999999999999999999999999999999998653
No 60
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.40 E-value=6.7e-14 Score=90.01 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=54.9
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.|.+|+.+|+.+|+||.+||+.+ +|+++|++||+|...|+.+.+.+||+.||+++++
T Consensus 6 ~g~~i~~~r~~~~~tq~~la~~~-~s~~~is~~e~g~~~~~~~~l~~l~~~l~~~~~~ 62 (293)
T 2qfc_A 6 LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIH 62 (293)
T ss_dssp HHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-cCHHHHHHHHCCCCCCCHHHHHHHHHHhCcCHHH
Confidence 48999999999999999999999 9999999999999999999999999999999865
No 61
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=99.40 E-value=2.4e-13 Score=74.17 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGV 74 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv 74 (82)
...|+.++. |++|.+||+.+|||++||+.+|+|+..|++. .+||++||.
T Consensus 23 ~~kLK~il~--GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~--~kIAk~fg~ 71 (83)
T 2l1p_A 23 RNALKDLLK--DMNQSSLAKECPLSQSMISSIVNSTYYANVS--AAKCQEFGR 71 (83)
T ss_dssp HHHHHHHHT--TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCC--SHHHHHHHH
T ss_pred HHHHHHHHH--hcCHHHHHHHcCCCHHHHHHHHcCCCCCCch--HHHHHHHHH
Confidence 678888888 9999999999999999999999999999998 899999974
No 62
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.28 E-value=7.4e-12 Score=77.05 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
+++|+.+|... ||.+||+.+|+|+++|++||+|...| .+.+.+||++||++++.
T Consensus 11 ~~rl~~~r~~~--tq~elA~~~Gis~~~i~~~e~g~~~p-~~~l~~ia~~~~v~~~~ 64 (189)
T 2fjr_A 11 LDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAIS-YDFAAHCALETGANLQW 64 (189)
T ss_dssp HHHHHHHHTCS--SHHHHHHHTTCCHHHHHHHHHSSSCC-HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhhc--CHHHHHHHhCcCHHHHHHHHhCCCCC-HHHHHHHHHHHCCCHHH
Confidence 67888888766 99999999999999999999999989 99999999999998753
No 63
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=99.19 E-value=8.9e-11 Score=72.26 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=42.7
Q ss_pred CCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Q 038591 19 PDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVL 65 (82)
Q Consensus 19 ~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~ 65 (82)
.....+|+.+|+..|+||+++|+.+|||+++|++||+|.+.|+...+
T Consensus 89 ~~s~~~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~G~r~iP~~~~ 135 (170)
T 2auw_A 89 EVSHEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIW 135 (170)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHH
T ss_pred CCCcHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Confidence 45588999999999999999999999999999999999987777664
No 64
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=99.02 E-value=7.8e-10 Score=67.09 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=54.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCccc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~ 79 (82)
...|..+|..+|+|..++|+.+|+|+..+..++.|+..|+.+.+.+|+++||++.++.
T Consensus 15 ~~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~ 72 (156)
T 1dw9_A 15 ADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSI 72 (156)
T ss_dssp HHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHHHHHhCcCHHHH
Confidence 6889999999999999999999999999999999999999999999999999987653
No 65
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=99.01 E-value=2.4e-13 Score=79.47 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=45.7
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHcC------CCCCCHHHHHHHHHHhCCCCcc
Q 038591 29 RLGKKMSQPDLANQINQRPQVVSEYENG------KAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 29 r~~~g~s~~elA~~~gis~~~i~~~e~g------~~~p~~~~~~~la~~lgv~~~e 78 (82)
|+ +||||.+||+.+|+|+++|++||+| ...|+...+.+||..|++++++
T Consensus 2 R~-~glTQ~eLA~~~Gvs~~~is~~E~G~~~~~~~~~p~~~~l~~la~~l~v~~~~ 56 (122)
T 1nr3_A 2 RE-RGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPVRILCRR 56 (122)
T ss_dssp CC-CSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCEEEEECC
T ss_pred cc-cCCCHHHHHHHhCCCHHHHHHHHcCCCccchhcccCHHHHHHHHHHHcccccc
Confidence 55 8999999999999999999999999 8899999999999999998864
No 66
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=98.92 E-value=2.8e-09 Score=55.20 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=37.6
Q ss_pred HHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCc
Q 038591 26 QRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLR 77 (82)
Q Consensus 26 k~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~ 77 (82)
+.+.+. ++||.+||+.+|||+++|++|| + .++...+..|++++|..+.
T Consensus 4 ~~~i~~-~~tq~~lA~~lGvs~~~Vs~we-~--~~p~~~~~~i~~~~~g~v~ 51 (61)
T 1rzs_A 4 KDVIDH-FGTQRAVAKALGISDAAVSQWK-E--VIPEKDAYRLEIVTAGALK 51 (61)
T ss_dssp HHHHHH-HSSHHHHHHHHTCCHHHHHHCC-S--BCCHHHHHHHHHHTTSCSC
T ss_pred HHHHHH-cCCHHHHHHHhCCCHHHHHHHH-h--hCCHHHHHHHHHHHCCCce
Confidence 344443 4599999999999999999999 3 3444666799999997664
No 67
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=98.82 E-value=1.3e-08 Score=53.50 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=37.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCC---CCCHHHHHH---HHHHhCCCCccc
Q 038591 34 MSQPDLANQINQRPQVVSEYENGKA---VPNQTVLAK---MEKAIGVKLRVK 79 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g~~---~p~~~~~~~---la~~lgv~~~e~ 79 (82)
+|+.|||+.+|+|++||+++++|.. .++.++..+ +++.||..++..
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~~ 52 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAV 52 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccHH
Confidence 5899999999999999999999988 788776665 555799887653
No 68
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=98.74 E-value=3.5e-08 Score=52.14 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCcc
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLRV 78 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~e 78 (82)
.+|+.|+|+.+|||++||+++++|...++.+. +..+++.||..++.
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~~~~vs~~t~~rV~~~a~~lgY~pn~ 57 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQP 57 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTCCCCSCHHHHHHHHHHHHHHCCCC--
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 57999999999999999999999988888877 55668889988764
No 69
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=98.68 E-value=7.6e-09 Score=64.74 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHH----------------HcCCCCCCHHHHHHHHHHh---CCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEY----------------ENGKAVPNQTVLAKMEKAI---GVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~----------------e~g~~~p~~~~~~~la~~l---gv~~~e 78 (82)
|.++..+ ...|+||.++|+.+|||+++|+++ ++|...|+...+.+++..| ++++++
T Consensus 14 G~ria~~-y~~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~ls~p~~~~L~k~~~~l~~~~~~l~e 88 (192)
T 1zx4_A 14 GLRLMRM-KNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEMGNKNLEFDQ 88 (192)
T ss_dssp HHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGCCHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccCccchHHHHHHHHHHhhhcCCCHHH
Confidence 7888888 779999999999999999999998 6888899999999999999 655443
No 70
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=98.66 E-value=5e-08 Score=65.54 Aligned_cols=57 Identities=18% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC-CCCHHHHHHHHHHhCCCCcc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKA-VPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~-~p~~~~~~~la~~lgv~~~e 78 (82)
+..|+.+|...|+||.+||+..||++..|+.+|+|+. .+..+.+..|+++||++...
T Consensus 232 gv~LR~ar~ReglTQ~~LAe~TGIPq~hISeMenGKr~~IGkdeaR~LA~ALnvDYRv 289 (443)
T 3g7d_A 232 GSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRV 289 (443)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHhcCCcCCccHHHHHHHHHHhCCCchh
Confidence 8889999999999999999999999999999999998 67999999999999998643
No 71
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=98.64 E-value=2.8e-07 Score=53.34 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHhCCCCHHHHHHHhC--CCHHHHHHHHcCCCCCCHHHHHHHHH
Q 038591 20 DTPRQIQRARLGKKMSQPDLANQIN--QRPQVVSEYENGKAVPNQTVLAKMEK 70 (82)
Q Consensus 20 ~~~~~lk~~r~~~g~s~~elA~~~g--is~~~i~~~e~g~~~p~~~~~~~la~ 70 (82)
..+..|+.+|...|+|+.|.|..+| ++..|..+||+|...++.+.+..+..
T Consensus 3 Mn~~ELkalR~ilgLt~~EaA~~i~~~vs~rtWQqWE~G~~~IP~~i~e~~~~ 55 (120)
T 1s4k_A 3 MNALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHhccCCHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 4578899999999999999999998 89999999999999999888666553
No 72
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.61 E-value=1.7e-07 Score=59.66 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=42.2
Q ss_pred CHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHH
Q 038591 21 TPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKM 68 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~l 68 (82)
.+..|+.+|...|+||.+||+.+|||+++|++||++....+...+..+
T Consensus 32 ~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~g~~~t~~k~a~~ 79 (221)
T 2h8r_A 32 AAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQKRAAL 79 (221)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCchhHHHHHHH
Confidence 367899999999999999999999999999999997777777766544
No 73
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=98.54 E-value=1.1e-07 Score=49.34 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQ 62 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~ 62 (82)
+|+.++...| |+.++|+.+|+|+++|++|++|...|++
T Consensus 5 ~l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~~~~~~~l 42 (67)
T 2pij_A 5 PLSKYLEEHG-TQSALAAALGVNQSAISQMVRAGRSIEI 42 (67)
T ss_dssp EHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcC-CHHHHHHHHCcCHHHHHHHHcCCCCCCe
Confidence 5788999999 9999999999999999999999877653
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.50 E-value=2.1e-07 Score=58.27 Aligned_cols=49 Identities=8% Similarity=0.010 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Q 038591 19 PDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAK 67 (82)
Q Consensus 19 ~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~ 67 (82)
...+..|+.++...|+||.+||+.+|+|.++|++|++|...++......
T Consensus 29 ~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~~~~~~~kraa 77 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQKRAA 77 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcCcccccccccc
Confidence 3347899999999999999999999999999999999877777665433
No 75
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=98.30 E-value=1.6e-06 Score=46.24 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=37.9
Q ss_pred HHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCc
Q 038591 27 RARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLR 77 (82)
Q Consensus 27 ~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~ 77 (82)
.+.+..| +|.+||+.||||+++|++|++|. .++...+..|..+-+-.+.
T Consensus 5 ~ai~~~G-~~~~lA~~lGVs~~aVs~W~~g~-~iP~~~~~~Ie~~T~G~vk 53 (71)
T 2hin_A 5 ELVRHFG-DVEKAAVGVGVTPGAVYQWLQAG-EIPPLRQSDIEVRTAYKLK 53 (71)
T ss_dssp HHHHHHS-SHHHHHHHHTSCHHHHHHHHHHT-SCCHHHHHHHHHHTTTSSC
T ss_pred HHHHHHC-CHHHHHHHHCCCHHHHHHHHhCC-CCCHHHHHHHHHHhCCcch
Confidence 3333344 69999999999999999999884 4567778888888876553
No 76
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=98.21 E-value=1.2e-06 Score=48.92 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC-CCCCHHHHHHHHHHhCCCC
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYENGK-AVPNQTVLAKMEKAIGVKL 76 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~-~~p~~~~~~~la~~lgv~~ 76 (82)
..|..+....++|..++|+.+|+|.+||+++.++. ..++.++..++.++||..+
T Consensus 10 ~~I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~~~~~Vs~~tr~rV~~algY~~ 64 (93)
T 2l0k_A 10 IKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHK 64 (93)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTTHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcCCCCCCCHHHHHHHHHHHCCCH
Confidence 34555556667999999999999999999999996 7789999999988877643
No 77
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=98.08 E-value=6e-06 Score=43.25 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPN 61 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~ 61 (82)
.|+.++... ||.++|+.+|+|+++||+|+++...+.
T Consensus 6 ~Lk~l~~~~--sq~~~A~~Lgvsq~aVS~~~~~~r~i~ 41 (65)
T 2cw1_A 6 DLKKFVEDK--NQEYAARALGLSQKLIEEVLKRGLPVY 41 (65)
T ss_dssp CHHHHHTTS--CHHHHHHHSSSCHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHc--CHHHHHHHhCCCHHHHHHHHHhcCCce
Confidence 377777765 999999999999999999998765443
No 78
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=97.96 E-value=1.1e-05 Score=44.19 Aligned_cols=43 Identities=5% Similarity=0.033 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
.-++|..+|+.+|++.++||+|.+|. ++.+..|..+||..+..
T Consensus 23 a~~gQ~~vAe~~GvdeStISR~k~~~----~~~~~~lLa~Lglkvv~ 65 (83)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQISRWKRDW----IPKFSMLLAVLEWGVVD 65 (83)
T ss_dssp HHHCHHHHHHHHTSCHHHHHHHHHHT----HHHHHHHHHHHTTCCCH
T ss_pred HHHhhHHHHHHhCCCHHHHhhhhhhH----HHHHHHHHHHhccCCCc
Confidence 45789999999999999999999974 56777778888887743
No 79
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=97.96 E-value=8.7e-06 Score=50.34 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHhCCC-HHHHHHHHc
Q 038591 22 PRQIQRARLGKKM--SQPDLANQINQR-PQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~--s~~elA~~~gis-~~~i~~~e~ 55 (82)
.++|+.+|+..|+ ||.+||+.+|++ +++|++|++
T Consensus 12 ~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 12 FDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 7899999999999 999999999999 999999987
No 80
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=97.94 E-value=6.2e-07 Score=50.53 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=34.7
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcc
Q 038591 29 RLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRV 78 (82)
Q Consensus 29 r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e 78 (82)
..-.+++|..||+.+||+.++||+|++|. .+....+..+. .|+|+++|
T Consensus 19 ~~la~~gq~~vA~~iGV~~StISR~k~~~-~~~~~~lLa~l-~l~v~~~e 66 (97)
T 1xwr_A 19 NKIAMLGTEKTAEAVGVDKSQISRWKRDW-IPKFSMLLAVL-EWGVVDDD 66 (97)
T ss_dssp HHHHHHCHHHHHHHHTCCTTTHHHHHHHH-HHHHHHHHHHH-HHCCCHHH
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHhhh-HHHHHHHHHHH-hcCCChHH
Confidence 34467899999999999999999999974 22333333333 67777654
No 81
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=97.66 E-value=4.5e-05 Score=46.18 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCH-HHHHHHHHHh
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQ-TVLAKMEKAI 72 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~-~~~~~la~~l 72 (82)
|+|+.++|+.+|||++|+++|.+. .|.. +.+..++..|
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~--~p~~~~~l~~vad~~ 86 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK--NQDFIAFKSEVADSF 86 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc--CcchHHHHHHHHHHH
Confidence 799999999999999999999985 5664 6777777765
No 82
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=97.57 E-value=0.0002 Score=35.34 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+..+ ...|+|+.++|+.+|+|++||++|.+
T Consensus 23 ~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 23 VAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34444 46899999999999999999999975
No 83
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.55 E-value=0.00028 Score=45.80 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=38.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCcc
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLRV 78 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~e 78 (82)
..|.+|+|+.+|||.+|||+..||...++.++ +...++.||..++.
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~~~~vs~~tr~rV~~aa~~lgY~pn~ 50 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRPNA 50 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCSCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 36899999999999999999999987777666 55567788887653
No 84
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.52 E-value=0.00028 Score=45.97 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=37.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCcc
Q 038591 34 MSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLRV 78 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~e 78 (82)
.|.+|+|+.+|||.+|||+..||...++.++ +...++.||..++.
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 48 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSA 48 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCCH
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCcCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 4789999999999999999999987787765 55567778887653
No 85
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.48 E-value=0.00029 Score=45.97 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=38.8
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCcc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLRV 78 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~e 78 (82)
.+..|.+|+|+.+|||.+|||+..||...++.++ +...++.+|..++.
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn~ 58 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPNK 58 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 3468999999999999999999999988777666 55567778887754
No 86
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.36 E-value=0.00035 Score=33.03 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=23.9
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
..|+|..++|+.+|+|++||.+|...
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 57999999999999999999999864
No 87
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=97.32 E-value=0.00043 Score=39.07 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lg 73 (82)
.+||.|+|+.+|+|.+||+++-+.-...+...-..|...++
T Consensus 58 e~TQREIA~~lGiS~stISRi~r~L~~l~~~~k~~l~~~l~ 98 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEEVLL 98 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHHHHHHHHSCHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHCCChhhhhHHHHHHHHccHHHHHHHHHHhc
Confidence 39999999999999999999965444455566566666554
No 88
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=97.26 E-value=0.00033 Score=46.10 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=36.7
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCC-Cc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVK-LR 77 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~-~~ 77 (82)
....|.+|+|+.+|||.+|||+..||...++.++ +...++.||.. ++
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~~a~~lgY~~pn 57 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPD 57 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC----
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 3567899999999999999999999977676655 66677788876 54
No 89
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=97.25 E-value=0.00053 Score=32.82 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.+..+. ..|+|..++|+.+|||++||++|.+.
T Consensus 13 ~i~~l~-~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 13 QISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 343443 46899999999999999999999865
No 90
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=97.03 E-value=0.00062 Score=38.41 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.9
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 29 RLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 29 r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
--..|+||.++|+.+|+|+++|+++..
T Consensus 30 yYv~g~tQ~eIA~~lGiSR~~VsrlL~ 56 (101)
T 2w7n_A 30 VLVDGKPQATFATSLGLTRGAVSQAVH 56 (101)
T ss_dssp HHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 345799999999999999999999864
No 91
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=97.02 E-value=0.0007 Score=35.28 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=25.5
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 25 IQRARLGKKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 25 lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
|+.+.... |+.++|+.||||+++||+|.++.+
T Consensus 7 L~~~~~~~--s~t~aA~~L~vtQ~AVS~~ir~~r 38 (66)
T 2ovg_A 7 LKDYAMRF--GQTKTAKDLGVYPSSINQAIHAGR 38 (66)
T ss_dssp HHHHHHHH--CHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHC--CHHHHHHHhCCCHHHHHHHHHhCC
Confidence 55555544 899999999999999999986543
No 92
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=96.97 E-value=0.00012 Score=47.66 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLR 77 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~ 77 (82)
...|.+|+|+.+|||.+|||+..||...++.++ +...++.+|..++
T Consensus 4 ~~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn 52 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPN 52 (332)
T ss_dssp -------------------------------------------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 457999999999999999999999976565554 5556677887664
No 93
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=96.87 E-value=0.00069 Score=35.10 Aligned_cols=23 Identities=9% Similarity=0.303 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Q 038591 34 MSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g 56 (82)
+|..|+|+.+|||++||.+|...
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67899999999999999999864
No 94
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=96.77 E-value=0.00021 Score=46.48 Aligned_cols=45 Identities=13% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH---HHHHHHHHhCCCCc
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQT---VLAKMEKAIGVKLR 77 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~---~~~~la~~lgv~~~ 77 (82)
-.|.+|+|+.+|||.+|||+..||...++.+ .+...++.+|..++
T Consensus 3 ~~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~a~~lgY~pn 50 (338)
T 3dbi_A 3 LTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPN 50 (338)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 3588999999999999999999997655544 46667777777664
No 95
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=96.76 E-value=0.0046 Score=34.60 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHh-CCCHHHHHHHHcCCCCCC------HHHHHHHHHHhCCCCcccc
Q 038591 22 PRQIQRARLGKKMSQPDLANQI-NQRPQVVSEYENGKAVPN------QTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~-gis~~~i~~~e~g~~~p~------~~~~~~la~~lgv~~~e~~ 80 (82)
...|....+..+++|.-||+.+ +-|+.+++.+.+-+..|. .+.+..+-+.|+.+..+|+
T Consensus 23 ~~~I~~ELK~~~IsQa~FAk~vlnRsQGtLSelLR~~enPkP~~~~lW~~Lk~m~nWL~Lpe~eR~ 88 (101)
T 2csf_A 23 YDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQHERD 88 (101)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTCHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhchhHHHHHHhcccCCCcchhhHHHHHHHHHHHHcCCHHHHH
Confidence 7888888999999999999976 899999999998444443 4777888899998887765
No 96
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=96.73 E-value=0.00024 Score=46.32 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLR 77 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~ 77 (82)
+..|.+|+|+.+|||.+|||+..||...++.++ +...++.+|..++
T Consensus 3 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~~~~lgY~pn 51 (339)
T 3h5o_A 3 LGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVPS 51 (339)
T ss_dssp -------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 357899999999999999999999976555444 5566667777654
No 97
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=96.59 E-value=0.0096 Score=30.98 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=37.3
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhCCCC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIGVKL 76 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lgv~~ 76 (82)
..|+|..++|+.+|+|..+|..+... -...+...+..++..+|++.
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~~~~g~~~ 78 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFGP 78 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCCC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Confidence 68999999999999999999987643 34567777888888888764
No 98
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=96.57 E-value=0.00035 Score=45.83 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLR 77 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~ 77 (82)
.+-.|.+|+|+.+|||.+|||+..||...++.++ +...++.+|..++
T Consensus 10 ~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn 59 (355)
T 3e3m_A 10 HRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVPD 59 (355)
T ss_dssp --------------------------------------------------
T ss_pred CCCCcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 3457899999999999999999999876655444 6666777777665
No 99
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=96.57 E-value=0.00035 Score=45.56 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCcc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLRV 78 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~e 78 (82)
...|.+|+|+.+|||.+|||+..||...++.++ +...++.+|..++.
T Consensus 5 ~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~ 54 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQ 54 (333)
T ss_dssp --------------------------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 457899999999999999999999876655544 56667777776653
No 100
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=96.52 E-value=0.0049 Score=43.10 Aligned_cols=52 Identities=6% Similarity=0.031 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHh------CCCHHHHHHHHcCCCCC---CHHHHHHHHHHhCCCC
Q 038591 23 RQIQRARLGKKMSQPDLANQI------NQRPQVVSEYENGKAVP---NQTVLAKMEKAIGVKL 76 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~------gis~~~i~~~e~g~~~p---~~~~~~~la~~lgv~~ 76 (82)
..|++++. -+||++||+.| ++|..+|.+||+|...| +...+..|-..+-.++
T Consensus 21 ~~~~~~~~--~~~~~~~a~~l~~~~~~~~~~~~~~rw~~~~~~~~~~~~~~~~~l~~~~~~~p 81 (482)
T 3me5_A 21 AMLEKLLQ--IYDVKMLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPP 81 (482)
T ss_dssp HHHHHHHT--TSCHHHHHHHHHHTCSSCCCHHHHHHHHC-------CCTHHHHHHHTTSCCCC
T ss_pred HHHHHHHH--HcCHHHHHHHHHhhccCCCCHHHHHHHHcCCCCCccccHHHHHHHHhhCCCCC
Confidence 34455444 68999999999 89999999999996655 4445566655555543
No 101
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=96.49 E-value=0.00043 Score=44.91 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCc
Q 038591 34 MSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLR 77 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~ 77 (82)
.|.+|+|+.+|||.+|||+..||...++.++ +...++.||..++
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~~~~vs~~tr~rV~~~~~~lgY~pn 49 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNYTPN 49 (330)
T ss_dssp -----------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 5889999999999999999999976555544 5556677777664
No 102
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=96.48 E-value=0.0082 Score=30.53 Aligned_cols=34 Identities=9% Similarity=-0.105 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....+.++.+.|+.+|||++|++++..
T Consensus 21 ~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 21 KIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5667788888999999999999999999998864
No 103
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=96.48 E-value=0.0029 Score=34.58 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
|+|..++|..+|||++||++|..
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHHH
Confidence 89999999999999999999974
No 104
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=96.47 E-value=0.00045 Score=45.28 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH---HHHHHHHHhCCCCc
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQT---VLAKMEKAIGVKLR 77 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~---~~~~la~~lgv~~~ 77 (82)
..|.+|+|+.+|||.+|||+..||...++.+ .+...++.+|..++
T Consensus 3 ~~ti~diA~~aGVS~~TVSrvLn~~~~vs~~tr~rV~~~a~~lgY~pn 50 (349)
T 1jye_A 3 PVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPN 50 (349)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 3689999999999999999999997655544 45666777777664
No 105
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.44 E-value=0.0048 Score=32.84 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=26.6
Q ss_pred HHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGK---KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~---g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..++..- ++|..+||+.+|++.++|.+..
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4456667776 7999999999999999998874
No 106
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=96.40 E-value=0.0053 Score=33.10 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|.|..++|+.+||+++||++|..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 589999999999999999999974
No 107
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.36 E-value=0.0085 Score=31.70 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+.....+|..|+|+.+|+|++++++..+
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34555555679999999999999999998754
No 108
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.27 E-value=0.01 Score=31.94 Aligned_cols=32 Identities=9% Similarity=0.080 Sum_probs=26.4
Q ss_pred HHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGK---KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~---g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..++... .+|..+||+.+|+|+.+|.+..
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4556667666 7999999999999999988764
No 109
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=96.22 E-value=0.012 Score=31.73 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....+.++.+.|+.+||+++|+++..+
T Consensus 43 r~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 43 WEHIQRIYEMCDRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 5667788888999999999999999999998875
No 110
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=96.21 E-value=0.0089 Score=29.85 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.5
Q ss_pred hCCCC----HHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMS----QPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s----~~elA~~~gis~~~i~~~e~ 55 (82)
..|.| ..++|..+||++++|.+|..
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 35778 99999999999999999975
No 111
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=96.14 E-value=0.00087 Score=43.94 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH---HHHHHHHhCCCCc
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQTV---LAKMEKAIGVKLR 77 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~---~~~la~~lgv~~~ 77 (82)
..|.+|+|+.+|||.+|||+..||...++.++ +...++.+|..++
T Consensus 8 ~~ti~dvA~~aGVS~~TVSrvLn~~~~Vs~~tr~rV~~aa~~lgY~pn 55 (348)
T 3bil_A 8 RPTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRAN 55 (348)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCCcC
Confidence 36899999999999999999999976555544 5566677777665
No 112
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=96.11 E-value=0.0021 Score=33.15 Aligned_cols=29 Identities=3% Similarity=0.015 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPN 61 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~ 61 (82)
=++..|+|+.+|+|++||++|.+....|.
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~g~fP~ 38 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHCCCCCC
Confidence 36889999999999999999997544443
No 113
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=96.10 E-value=0.0081 Score=30.43 Aligned_cols=33 Identities=9% Similarity=0.040 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+.... .+..+.|+.+|||++|+++...
T Consensus 23 r~~I~~aL~~~-gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 23 AQVLKLFYAEY-PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHHHHHS-CSHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHh-CCHHHHHHHhCCCHHHHHHHHH
Confidence 56777777777 7999999999999999998875
No 114
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=96.09 E-value=0.012 Score=33.51 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
+.+..+.+.-..++.++|+.+||+++||++|.++.
T Consensus 15 ~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhch
Confidence 34444444334455699999999999999998873
No 115
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=96.08 E-value=0.0072 Score=30.88 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|+|.+|+|+.+|+|.++|..+..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 599999999999999999999864
No 116
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=96.05 E-value=0.023 Score=34.07 Aligned_cols=45 Identities=13% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQ------RPQVVSEYENGKAVPNQTVLAKM 68 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gi------s~~~i~~~e~g~~~p~~~~~~~l 68 (82)
+..++..|...|+||.+++..+|. |.++|+++|.- ..+...+.++
T Consensus 13 ~~~~k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l--~lS~knm~kl 63 (160)
T 1e3o_C 13 AKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEAL--NLSFKNMSKL 63 (160)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHT--CSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHhhccccCCCcCcccccccccc--CCChHHHHhc
Confidence 788899999999999999999998 99999999974 4455554443
No 117
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=96.04 E-value=0.014 Score=32.48 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=23.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|+|..++|+.+|+|++||++|..
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4799999999999999999999964
No 118
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=96.00 E-value=0.0048 Score=32.86 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
-++..|+|+.+|||+.||..||.
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHH
Confidence 47889999999999999999987
No 119
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.99 E-value=0.014 Score=33.23 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=23.2
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|+|..++|+.+|+|++||++|.+
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~~~ 44 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5799999999999999999999974
No 120
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.97 E-value=0.012 Score=30.35 Aligned_cols=33 Identities=6% Similarity=-0.009 Sum_probs=26.0
Q ss_pred HHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 23 RQIQRARLG-KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~~-~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|..+... ..+|..+||+.+|+|+++|.+..+
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 345555554 469999999999999999998754
No 121
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=95.91 E-value=0.022 Score=28.77 Aligned_cols=28 Identities=11% Similarity=-0.123 Sum_probs=24.4
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++-..|+|..++|+.+|+|+++|.++..
T Consensus 26 l~~~~g~s~~eIA~~lgis~~tv~~~~~ 53 (70)
T 2o8x_A 26 LTQLLGLSYADAAAVCGCPVGTIRSRVA 53 (70)
T ss_dssp HHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3446899999999999999999998765
No 122
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=95.88 E-value=0.0067 Score=30.11 Aligned_cols=44 Identities=9% Similarity=0.132 Sum_probs=31.0
Q ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 30 LGKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 30 ~~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
-..|+|.+|+|+.+|+|++||..+... -...+...+..++...|
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~~~~~~g 57 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMR 57 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSC
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence 467999999999999999999987653 12334445555554443
No 123
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=95.86 E-value=0.03 Score=33.85 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQ------RPQVVSEYENGKAVPNQTVLAKME 69 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gi------s~~~i~~~e~g~~~p~~~~~~~la 69 (82)
+..++..|...|+||.+++..+|. |.++|+++|+- ..+...+.++-
T Consensus 19 a~~fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l--~ls~kn~~klk 70 (164)
T 2xsd_C 19 AKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEAL--QLSFKNMCKLK 70 (164)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTT--CSBHHHHHHHH
T ss_pred HHHHHHHHhhcCCcccccccccccccCCCcCcchhhhhhcc--CCCHHHHHHcc
Confidence 778888899999999999999986 99999999974 44555554443
No 124
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=95.86 E-value=0.022 Score=33.78 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQ------RPQVVSEYENGKAVPNQTVLAKME 69 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gi------s~~~i~~~e~g~~~p~~~~~~~la 69 (82)
+...+.-|...|+||.+++..+|. |.+||+++|+- ..+...+.+|-
T Consensus 9 a~~~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l--~ls~knm~kLk 60 (146)
T 1au7_A 9 ANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENL--QLSFKNACKLK 60 (146)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTT--CSBHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhcc--CCChHHHHhcc
Confidence 566788888999999999999986 99999999974 45555555543
No 125
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=95.86 E-value=0.019 Score=35.21 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
+..++.+.. .|+|+.++|..+|+|+++|+++..
T Consensus 42 A~a~~~L~~-~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 42 ADFIGRELA-KGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred HHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455555555 499999999999999999999975
No 126
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=95.85 E-value=0.031 Score=29.62 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=31.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
..|+|.+|+|+.+|+|..||..+... -...+...+..++...|
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~g 80 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 80 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 68999999999999999999887642 22334445555554444
No 127
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=95.83 E-value=0.021 Score=30.76 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=25.3
Q ss_pred HHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 27 RARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 27 ~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.++-..|+|..|+|+.+|+|..||..+..
T Consensus 47 ~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 47 QRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34567899999999999999999998875
No 128
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=95.81 E-value=0.013 Score=31.93 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....+.++.+.|+.+|||++|+++...
T Consensus 53 ~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 53 RTLLTTALRHTQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5667777888899999999999999999988754
No 129
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=95.81 E-value=0.0084 Score=33.64 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++|..|+|+.+|||+.||..||.
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~ 23 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDD 23 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 47899999999999999999985
No 130
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=95.80 E-value=0.019 Score=33.36 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=23.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|+|..++|+.+|+|++||++|.+
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4799999999999999999999964
No 131
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=95.78 E-value=0.012 Score=32.32 Aligned_cols=34 Identities=12% Similarity=-0.040 Sum_probs=28.5
Q ss_pred HHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARL--GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~--~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...++.+.. ..|++|++||..++++..+|+++..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk 58 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILK 58 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 456677777 5599999999999999999998764
No 132
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=95.78 E-value=0.026 Score=29.07 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|+|..|+|+.+|+|.++|..+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 699999999999999999999875
No 133
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.71 E-value=0.022 Score=30.43 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..+..+.+...++..|||+.+++|+.||.+..
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL 37 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAML 37 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 34556667778999999999999999998754
No 134
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=95.71 E-value=0.017 Score=37.82 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.++..+....++||.|||+.+|+|+.||++..+
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~ 43 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLK 43 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 456667788899999999999999999999854
No 135
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=95.67 E-value=0.038 Score=30.01 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|+|.+|+|+.+|+|..||..+..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~ 66 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLT 66 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 899999999999999999988765
No 136
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, Pro structure initiative; 1.70A {Shewanella oneidensis} SCOP: a.35.1.6
Probab=95.66 E-value=0.15 Score=29.93 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH
Q 038591 19 PDTPRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQT 63 (82)
Q Consensus 19 ~~~~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~ 63 (82)
.+++-.++.+|...|+|..++|+..+.|..-|-.||.|....+.-
T Consensus 6 glnaie~~ylr~slgl~~aqv~~l~k~se~dv~aweage~~~~~l 50 (166)
T 2ox6_A 6 GLNAIEMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPEL 50 (166)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHH
T ss_pred ccchHhHHHHHHHcCCCHHHHHHHhccCHHHhhhhhhcCCcCcch
Confidence 456788999999999999999999999999999999997765543
No 137
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=95.65 E-value=0.022 Score=36.07 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
+..++.+. ..|+|+.++|+.+|+|+++|+++..=
T Consensus 124 a~~~~~l~-~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 124 ARGYQALL-EMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred HHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45556666 78999999999999999999998753
No 138
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=95.64 E-value=0.032 Score=31.37 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=41.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHH-hCCCHHHHHHHHcCCCC------CCHHHHHHHHHHhCC
Q 038591 22 PRQIQRARLGKKMSQPDLANQ-INQRPQVVSEYENGKAV------PNQTVLAKMEKAIGV 74 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~-~gis~~~i~~~e~g~~~------p~~~~~~~la~~lgv 74 (82)
...|++.....+++|..||+. +|.++.+++.+.+.-.. ..-+...++-..|..
T Consensus 23 ~~~ike~L~~~~isQ~~FA~~VLgrsQgtlS~lL~~PkpW~~L~~~Gre~yiRM~nWL~~ 82 (101)
T 1x2l_A 23 AFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRKLTVKGKEPFIKMKQFLSD 82 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGGCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHccccchHHHHhcCCCCHHHHhHhhhHHHHHHHHHccC
Confidence 788899999999999999998 89999999999986221 124456666666664
No 139
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=95.59 E-value=0.076 Score=29.80 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCC---CCC---HHHHHHHHHHhCCCCcccc
Q 038591 22 PRQIQRARLGKKMSQPDLAN-QINQRPQVVSEYENGKA---VPN---QTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~-~~gis~~~i~~~e~g~~---~p~---~~~~~~la~~lgv~~~e~~ 80 (82)
...|+..+...+++|..||+ -+|.++.+++.+.+.-. ..+ -+...++-..|..+.+++.
T Consensus 23 ~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L~~~Gre~fiRM~nWL~l~e~qr~ 88 (101)
T 1wh6_A 23 TRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLSDQLGQAV 88 (101)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHHhHHhHHHHHHHHHHhCCcHHHHH
Confidence 78899999999999999999 67999999999998622 222 5677888888887777653
No 140
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=95.53 E-value=0.016 Score=29.56 Aligned_cols=43 Identities=9% Similarity=0.078 Sum_probs=30.1
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
..|+|..++|+.+|+|+++|+.+... -...+...+...+...|
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~~~~~g 70 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhC
Confidence 67999999999999999999987653 12334444444444443
No 141
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=95.49 E-value=0.031 Score=32.31 Aligned_cols=26 Identities=4% Similarity=0.118 Sum_probs=23.1
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
..|+|+.++|+.+|+|..||+++-+.
T Consensus 73 ~~G~syreIA~~~g~S~aTIsRv~r~ 98 (119)
T 3kor_A 73 KQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 46899999999999999999988654
No 142
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=95.46 E-value=0.019 Score=31.84 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=48.4
Q ss_pred CHHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCCCC------CHHHHHHHHHHhCCCCcccc
Q 038591 21 TPRQIQRARLGKKMSQPDLAN-QINQRPQVVSEYENGKAVP------NQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~-~~gis~~~i~~~e~g~~~p------~~~~~~~la~~lgv~~~e~~ 80 (82)
....|+......++||.-||+ -+|.++.+++.+.+.-..| ..+.+.++-..|+.+-++++
T Consensus 12 I~~~ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lL~~Pkdpw~~l~~Gre~f~rM~nWL~l~e~eR~ 78 (93)
T 2o4a_A 12 IYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERD 78 (93)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhhHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 478899999999999999999 5699999999999754312 24558888889998877764
No 143
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=95.44 E-value=0.038 Score=30.70 Aligned_cols=34 Identities=6% Similarity=-0.141 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....+.++...|+.+|||++|+++...
T Consensus 60 r~~I~~aL~~~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 60 QPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4566777888899999999999999999998764
No 144
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=95.39 E-value=0.041 Score=29.42 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|+|..++|+.+|+|..+|..+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 689999999999999999999875
No 145
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=95.37 E-value=0.037 Score=29.82 Aligned_cols=34 Identities=12% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.++|+.+|+++++|++..+
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~ 56 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRLK 56 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4456666667889999999999999999998754
No 146
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=95.37 E-value=0.02 Score=32.03 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=20.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 038591 34 MSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~ 55 (82)
+|..|+|+.+|||+.||..||.
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~ 24 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDN 24 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH
Confidence 6889999999999999999986
No 147
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=95.33 E-value=0.022 Score=30.88 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=25.5
Q ss_pred HHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARL-GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~-~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+.. ..++|+.+||+.+|+|+++++++.+
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444444 6789999999999999999998743
No 148
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=95.30 E-value=0.019 Score=33.85 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=23.2
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|+|..++|+.+|+|++||++|.+
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4699999999999999999999975
No 149
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=95.30 E-value=0.004 Score=34.59 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 038591 34 MSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..++|..+||+++||++|..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHH
Confidence 7999999999999999999964
No 150
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=95.29 E-value=0.023 Score=32.39 Aligned_cols=33 Identities=6% Similarity=0.005 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCC--CCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKK--MSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g--~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+....+ +|+.+||+.+|++++||++..
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L 63 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSV 63 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 455666666666 899999999999999999874
No 151
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.25 E-value=0.019 Score=31.13 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..++ ..|+|..+||+.+|+|+++|.+..
T Consensus 21 ~IL~lL~-~~g~sa~eLAk~LgiSk~aVr~~L 51 (82)
T 1oyi_A 21 EAIKTIG-IEGATAAQLTRQLNMEKREVNKAL 51 (82)
T ss_dssp HHHHHHS-SSTEEHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444444 678999999999999999988764
No 152
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=95.17 E-value=0.05 Score=29.61 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=23.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|+|.+|+|+.+|+|..||..+..
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 7899999999999999999998764
No 153
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=95.16 E-value=0.052 Score=30.74 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=24.5
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++-..|+|..|+|+.+|+|++||+.+..
T Consensus 33 l~y~~g~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 33 LYYADDYSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp HHHHTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3446899999999999999999998865
No 154
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.15 E-value=0.028 Score=30.74 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..+..+.+...++..|||+.+++|+.||.+..
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL 37 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAML 37 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHH
Confidence 44566677778999999999999999998764
No 155
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=95.04 E-value=0.019 Score=30.81 Aligned_cols=32 Identities=9% Similarity=-0.076 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+....++|..++|+.+|+|++++++..+
T Consensus 29 il~~l~~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 29 ILCMLSGSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp HHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34444444479999999999999999998753
No 156
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=94.99 E-value=0.058 Score=30.39 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLA 66 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~ 66 (82)
..+|..+||+.+|+|++||.++-+--..-....+.
T Consensus 38 ~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk 72 (111)
T 2o3f_A 38 IESTVNEISALANSSDAAVIRLCXSLGLKGFQDLX 72 (111)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHH
T ss_pred HhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHH
Confidence 58999999999999999999999865555544433
No 157
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=94.98 E-value=0.049 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+.....+|..+||+.+|+|++++++..
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 40 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERV 40 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45677777778999999999999999998864
No 158
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=94.97 E-value=0.21 Score=29.50 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCC------CHHHHHHHHcCCCCCCHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQ------RPQVVSEYENGKAVPNQTVLAKM 68 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gi------s~~~i~~~e~g~~~p~~~~~~~l 68 (82)
+...+.-|...|+||.+++..+|. |.++|+++|.-. .+...+.++
T Consensus 10 a~~f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~--ls~kn~~kl 60 (151)
T 3d1n_I 10 AKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLD--ITPKSAQKL 60 (151)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTC--SCHHHHHHH
T ss_pred HHHHHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCC--CChhHHHHh
Confidence 566788889999999999999996 999999999754 355554443
No 159
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=94.93 E-value=0.037 Score=29.77 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=30.8
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
..|+|.+|+|+.+|+|..||..+... -...+...+..++...|
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~g 88 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHN 88 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence 68999999999999999999887643 22334444555555554
No 160
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=94.92 E-value=0.047 Score=30.67 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=48.9
Q ss_pred CHHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCCC------CCHHHHHHHHHHhCCCCcccc
Q 038591 21 TPRQIQRARLGKKMSQPDLAN-QINQRPQVVSEYENGKAV------PNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 21 ~~~~lk~~r~~~g~s~~elA~-~~gis~~~i~~~e~g~~~------p~~~~~~~la~~lgv~~~e~~ 80 (82)
....|+...+..+++|.-||+ -+|.++.+++.+.+.-.. +..+.+.++-..|..+-++|+
T Consensus 22 I~~~Ik~~Lk~~~isQ~~FA~~VL~rsQgtLs~lLr~P~kPW~~L~~Gre~f~RM~nWL~l~e~eR~ 88 (101)
T 1wiz_A 22 IYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQNFLNLPEVERD 88 (101)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCCCTTTCCHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhhHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 378999999999999999999 569999999999985421 235668888888888877764
No 161
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=94.92 E-value=0.16 Score=30.20 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhC------CCHHHHHHHHcCCCCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQIN------QRPQVVSEYENGKAVPNQTVLAKME 69 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~g------is~~~i~~~e~g~~~p~~~~~~~la 69 (82)
+..++.-|...|+||.+++..+| .|.+||.++|.- ..+...+-+|-
T Consensus 16 a~~fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l--~ls~~nm~kLk 67 (155)
T 3l1p_A 16 AKLLKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEAL--QLSLKNMSKLR 67 (155)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTT--CSCHHHHHHHH
T ss_pred HHHHHhhhheecccHHHHHHHHHhhcCcccccccccccccc--cCChhhHhhcc
Confidence 56778888999999999999865 789999999984 44555554443
No 162
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=94.92 E-value=0.075 Score=29.37 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=33.1
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhCC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIGV 74 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lgv 74 (82)
..|+|.+|+|+.+|+|..||..+... -...+...+..+|...|+
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gl 94 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 46999999999999999999888653 223455566666666665
No 163
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.89 E-value=0.044 Score=29.17 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..|+|+.+|+|..||.+..+
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 567899999999999999988753
No 164
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=94.84 E-value=0.054 Score=31.54 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.....+|..+||+.+|+|++++++..
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSRV 42 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 355677777778999999999999999998864
No 165
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=94.80 E-value=0.086 Score=29.90 Aligned_cols=34 Identities=15% Similarity=0.273 Sum_probs=26.0
Q ss_pred HHHHHHHH-HhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRAR-LGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r-~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
+.+++-++ -..|+|+.++|+.+|+|..||+++-+
T Consensus 46 aqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 46 SQRFEVAKMLTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 33443332 34689999999999999999998765
No 166
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=94.79 E-value=0.069 Score=26.48 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=23.5
Q ss_pred HHhCCCCHHHHHHHh-----CCCHHHHHHHHc
Q 038591 29 RLGKKMSQPDLANQI-----NQRPQVVSEYEN 55 (82)
Q Consensus 29 r~~~g~s~~elA~~~-----gis~~~i~~~e~ 55 (82)
.....+|..||++.+ ++|..||++..+
T Consensus 15 ~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 15 TSNEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp HHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 345679999999999 999999999876
No 167
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.78 E-value=0.056 Score=31.57 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.....+|..+||+.+|+|++++++..
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 43 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGVSPETIHVRV 43 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456677777788999999999999999998864
No 168
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.71 E-value=0.047 Score=29.42 Aligned_cols=29 Identities=3% Similarity=-0.049 Sum_probs=22.6
Q ss_pred HHHHHhC-CCCHHHHHHHhCCCHHH-HHHHH
Q 038591 26 QRARLGK-KMSQPDLANQINQRPQV-VSEYE 54 (82)
Q Consensus 26 k~~r~~~-g~s~~elA~~~gis~~~-i~~~e 54 (82)
..+.... ++|+.+||+.+|+++++ +++..
T Consensus 22 ~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l 52 (95)
T 2pg4_A 22 LEFEKKGYEPSLAEIVKASGVSEKTFFMGLK 52 (95)
T ss_dssp HHHHHTTCCCCHHHHHHHHCCCHHHHHTTHH
T ss_pred HHHHhcCCCCCHHHHHHHHCCCchHHHHHHH
Confidence 3344444 79999999999999999 77654
No 169
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=94.71 E-value=0.06 Score=31.79 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.....+|..+||+.+|+|++++++..
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 45 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRL 45 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456677777778999999999999999988864
No 170
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=94.71 E-value=0.035 Score=29.73 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+....++|..++|+.+|++++++++..+
T Consensus 21 iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~ 52 (100)
T 1ub9_A 21 IMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIR 52 (100)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44555556789999999999999999998643
No 171
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=94.70 E-value=0.06 Score=31.35 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.....+|..+||+.+|+|++++++..
T Consensus 12 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 44 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADILNTTRQRIARRI 44 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 355677777788999999999999999998764
No 172
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=94.69 E-value=0.047 Score=31.77 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Q 038591 34 MSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g 56 (82)
+|..|+|+.+|||+.||..||.-
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~ 23 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEK 23 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC
Confidence 57889999999999999999863
No 173
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=94.66 E-value=0.076 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.2
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++-..|+|..|+|+.+|+|.+||..+..
T Consensus 36 l~~~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 36 LFYLEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp HHHTSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3446899999999999999999998764
No 174
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=94.60 E-value=0.079 Score=28.57 Aligned_cols=30 Identities=7% Similarity=0.065 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+ ...++..+||+.+|+|+++|++..+
T Consensus 36 Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 36 ILRML--DKGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp HHHHH--HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHH--cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34444 5779999999999999999998653
No 175
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=94.56 E-value=0.068 Score=30.06 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.++|+.+|++++++++..+
T Consensus 32 ~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~ 65 (138)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFFHVDKGTIARTLR 65 (138)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4456666677889999999999999999998753
No 176
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=94.52 E-value=0.045 Score=32.35 Aligned_cols=25 Identities=8% Similarity=0.015 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
..+|..|+|+.+|||+.||..||.-
T Consensus 3 ~~~tI~evA~~~Gvs~~tLR~ye~~ 27 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRALRYYDKI 27 (146)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHC
Confidence 3589999999999999999999963
No 177
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=94.52 E-value=0.078 Score=29.88 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.++|+.+|++++++++..+
T Consensus 34 ~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~ 67 (142)
T 3bdd_A 34 YSILQTLLKDAPLHQLALQERLQIDRAAVTRHLK 67 (142)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3456666677789999999999999999998743
No 178
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.51 E-value=0.066 Score=30.56 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|++++++++..+
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 76 (148)
T 3nrv_A 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVK 76 (148)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4556666676789999999999999999998743
No 179
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=94.50 E-value=0.051 Score=30.56 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYENGKAVPNQTV 64 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~ 64 (82)
...-..+|..+||+.+|+|++||.++-+--..-+...
T Consensus 30 ~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~e 66 (107)
T 3iwf_A 30 PHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNE 66 (107)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHH
Confidence 3445689999999999999999999987544444444
No 180
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=94.47 E-value=0.046 Score=31.16 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+...-++|+.+||+.+|++++++++..
T Consensus 40 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 72 (142)
T 3ech_A 40 VHVLKLIDEQRGLNLQDLGRQMCRDKALITRKI 72 (142)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHC---CHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHH
Confidence 455666777779999999999999999999874
No 181
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=94.47 E-value=0.08 Score=30.15 Aligned_cols=34 Identities=12% Similarity=-0.014 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|++++++++..+
T Consensus 34 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~ 67 (145)
T 3g3z_A 34 FAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCK 67 (145)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4556667777789999999999999999998743
No 182
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=94.44 E-value=0.078 Score=30.92 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.....+|..+||+.+|+|++++++..
T Consensus 10 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l 42 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLAESTIHERI 42 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 355666777778999999999999999998864
No 183
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=94.38 E-value=0.051 Score=31.57 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+.....+|..++|+.+|+|++++++..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 38 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRI 38 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34555666667999999999999999998864
No 184
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=94.38 E-value=0.089 Score=28.92 Aligned_cols=31 Identities=16% Similarity=0.090 Sum_probs=24.7
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+. ..+++..++|+.+|+|+++|++..+
T Consensus 31 IL~~L~-~~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 31 IMELLS-VSEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp HHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444 6778999999999999999998743
No 185
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=94.38 E-value=0.049 Score=32.79 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.....+|..+||+.+|+|++++++..
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl 62 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHERI 62 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 566777777788999999999999999988753
No 186
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=94.37 E-value=0.042 Score=30.54 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.++|..|+|+.+|+|.++|.+++..
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999998753
No 187
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.36 E-value=0.079 Score=31.84 Aligned_cols=33 Identities=6% Similarity=0.143 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.....+|..+||+.+|+|++++++..
T Consensus 20 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l 52 (171)
T 2ia0_A 20 RNILRLLKKDARLTISELSEQLKKPESTIHFRI 52 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 456677777778999999999999999998764
No 188
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=94.34 E-value=0.085 Score=29.64 Aligned_cols=34 Identities=9% Similarity=-0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.++|+.+|++++++++..+
T Consensus 41 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 74 (140)
T 2nnn_A 41 WAALVRLGETGPCPQNQLGRLTAMDAATIKGVVE 74 (140)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4455666666799999999999999999998753
No 189
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=94.33 E-value=0.055 Score=30.69 Aligned_cols=32 Identities=13% Similarity=-0.026 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+....+++..++|+.+|+|++++++..+
T Consensus 47 IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~ 78 (122)
T 1u2w_A 47 ITYALCQDEELCVCDIANILGVTIANASHHLR 78 (122)
T ss_dssp HHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34445545679999999999999999998753
No 190
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=94.29 E-value=0.045 Score=31.49 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=23.9
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 29 RLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 29 r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
+--.|+|..|+|+.+|+|.++|.....
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ 146 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 345799999999999999999998875
No 191
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=94.28 E-value=0.091 Score=30.07 Aligned_cols=32 Identities=6% Similarity=0.067 Sum_probs=26.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+.....+|..+||+.+|+|++++++..
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l 39 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRV 39 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45666666677999999999999999998753
No 192
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.26 E-value=0.087 Score=29.97 Aligned_cols=34 Identities=12% Similarity=0.101 Sum_probs=27.8
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARL-GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~-~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+.. ..++|+.++|+.+|++++++++..+
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~ 72 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLR 72 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHH
Confidence 345666666 6789999999999999999988743
No 193
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=94.25 E-value=0.062 Score=30.55 Aligned_cols=33 Identities=12% Similarity=0.089 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+....++|+.+||+.+|++++++++..
T Consensus 40 ~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 72 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWTKKDTPTVNRIV 72 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHH
Confidence 455666777789999999999999999999874
No 194
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=94.25 E-value=0.037 Score=32.57 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=21.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.++..|+|+.+|||+.||..||.
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~ 24 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYER 24 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHH
Confidence 47899999999999999999986
No 195
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=94.23 E-value=0.082 Score=33.75 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+....++|+.+||+.+|++++|+++..
T Consensus 155 ~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L 187 (244)
T 2wte_A 155 MKLLNVLYETKGTGITELAKMLDKSEKTLINKI 187 (244)
T ss_dssp HHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHH
Confidence 345566667789999999999999999999884
No 196
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=94.22 E-value=0.041 Score=32.88 Aligned_cols=23 Identities=9% Similarity=0.253 Sum_probs=20.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.+|++..+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~ 186 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLK 186 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHHHH
Confidence 48999999999999999998864
No 197
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=94.22 E-value=0.083 Score=29.04 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|..+ ...+++..+||+.+|+++++|++..+
T Consensus 25 ~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~ 56 (114)
T 2oqg_A 25 EILTEL-GRADQSASSLATRLPVSRQAIAKHLN 56 (114)
T ss_dssp HHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344555 56789999999999999999998743
No 198
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.14 E-value=0.11 Score=29.44 Aligned_cols=34 Identities=9% Similarity=0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.++|+.+|++++++++..+
T Consensus 36 ~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~ 69 (145)
T 2a61_A 36 FDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVK 69 (145)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHH
Confidence 4455666667789999999999999999998753
No 199
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=94.13 E-value=0.1 Score=29.73 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|++++++++..+
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~ 78 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKMYLACSTTTDLVD 78 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHH
Confidence 4556666667789999999999999999998743
No 200
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.10 E-value=0.12 Score=28.75 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
.|..+.. ..+|..++|+.+|+++++|++..
T Consensus 37 il~~L~~-~~~s~~ela~~l~is~stvsr~l 66 (119)
T 2lkp_A 37 ILTQLRN-GPLPVTDLAEAIGMEQSAVSHQL 66 (119)
T ss_dssp HHHHHHH-CCCCHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 3444444 67999999999999999999864
No 201
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.05 E-value=0.11 Score=30.08 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++++.+||+.+|+++++|++..+
T Consensus 52 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~ 85 (162)
T 2fa5_A 52 WRVITILALYPGSSASEVSDRTAMDKVAVSRAVA 85 (162)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3455666666789999999999999999988743
No 202
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=94.04 E-value=0.048 Score=32.64 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.++++..+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~ 189 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILK 189 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHHHHH
Confidence 57999999999999999999864
No 203
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.03 E-value=0.1 Score=29.85 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 29 RLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 29 r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
....++|+.+||+.+|+++++|++..
T Consensus 18 ~~~~~~~~~ela~~l~vs~~tvs~~l 43 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKMV 43 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHHH
T ss_pred hhcCCCCHHHHHHHhCCCHHHHHHHH
Confidence 34578999999999999999998874
No 204
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=94.03 E-value=0.083 Score=28.81 Aligned_cols=29 Identities=10% Similarity=0.029 Sum_probs=24.2
Q ss_pred HHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 27 RARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 27 ~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+....+++..++|+.+|+|++++++..+
T Consensus 35 ~l~~~~~~~~~ela~~l~is~stvs~hL~ 63 (99)
T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHLC 63 (99)
T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44455679999999999999999998754
No 205
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=94.02 E-value=0.092 Score=32.60 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=26.9
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 22 PRQIQRARLG-KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 22 ~~~lk~~r~~-~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
|.....+... ...+|++||+.+|+|++.|+++.+-
T Consensus 30 g~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 30 GQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444433 4689999999999999999999864
No 206
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.00 E-value=0.11 Score=29.22 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=26.6
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGK--KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~--g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.... ++|+.+||+.+|++++++++..
T Consensus 37 ~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l 71 (141)
T 3bro_A 37 MTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLL 71 (141)
T ss_dssp HHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHH
Confidence 34556666655 7999999999999999998874
No 207
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=93.97 E-value=0.051 Score=32.58 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.+|++..+
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~ 168 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIG 168 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 38999999999999999998754
No 208
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=93.95 E-value=0.068 Score=30.77 Aligned_cols=34 Identities=0% Similarity=-0.037 Sum_probs=28.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.+||+.+|+++++++++.+
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~ 77 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLK 77 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4556667777899999999999999999998753
No 209
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.92 E-value=0.079 Score=29.86 Aligned_cols=34 Identities=24% Similarity=0.071 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.++|+.+|++++++++..+
T Consensus 39 ~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~ 72 (142)
T 2fbi_A 39 WRVIRILRQQGEMESYQLANQACILRPSMTGVLA 72 (142)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHH
Confidence 4456666777789999999999999999988753
No 210
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=93.91 E-value=0.083 Score=29.91 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=27.9
Q ss_pred HHHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRA-RLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~-r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+ ....++|+.+||+.+|++++++++..+
T Consensus 40 ~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~ 74 (146)
T 2fbh_A 40 WLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD 74 (146)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHH
Confidence 4566666 566789999999999999999998743
No 211
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=93.88 E-value=0.12 Score=29.83 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+....++|+.++|+.+|++++++++..
T Consensus 47 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l 79 (154)
T 2eth_A 47 LYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVV 79 (154)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHH
Confidence 345666666678999999999999999999874
No 212
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=93.83 E-value=0.085 Score=31.33 Aligned_cols=34 Identities=15% Similarity=0.122 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQTVL 65 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~ 65 (82)
.+.|..++|+.+|||+.+++.+-.++...=...+
T Consensus 29 ~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L~~~~~ 62 (197)
T 2f07_A 29 DKASISDIVKKAGTAQGTFYLYFSSKNALIPAIA 62 (197)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHHHhCCCHHHHHHHHH
Confidence 4679999999999999999999887765443333
No 213
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=93.83 E-value=0.13 Score=28.91 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.++|+.+|++++++++..+
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~ 70 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRMLD 70 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHH
Confidence 4456666667789999999999999999998743
No 214
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=93.82 E-value=0.097 Score=31.78 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHH
Q 038591 24 QIQRARLG-KKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r~~-~g~s~~elA~~~gis~~~i~~~e 54 (82)
.|..+... ..+|..+||+.+|+|++||.+..
T Consensus 26 Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi 57 (187)
T 1j5y_A 26 IVRILERSKEPVSGAQLAEELSVSRQVIVQDI 57 (187)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 34445544 34999999999999999998864
No 215
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=93.82 E-value=0.075 Score=30.87 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+....++|+.+||+.+|+++++++++.
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 85 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDYLKIDKGTTARAI 85 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 566777777788999999999999999999874
No 216
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=93.81 E-value=0.079 Score=29.90 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=26.7
Q ss_pred HHHHHHHHHhC--CCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGK--KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~--g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.... ++|+.+||+.+|++++++++..
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l 68 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLL 68 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHH
Confidence 44556666554 8999999999999999999874
No 217
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=93.80 E-value=0.061 Score=32.42 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.++++..+
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~ 191 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLR 191 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 78999999999999999999864
No 218
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=93.75 E-value=0.058 Score=32.74 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 038591 34 MSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~ 55 (82)
+|+.++|..+|+|+.+|++..+
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~ 209 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLK 209 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHH
Confidence 7999999999999999999865
No 219
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=93.71 E-value=0.049 Score=32.54 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.+|++..+
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~ 161 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLA 161 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 37999999999999999998754
No 220
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=93.71 E-value=0.059 Score=32.84 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|+.++|..+|+|+.+|++..+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~ 197 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLK 197 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHH
Confidence 358999999999999999999754
No 221
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=93.70 E-value=0.076 Score=31.51 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+.+...+|..+||+.+|+|++++.+-.
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl 38 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRI 38 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 45677777788999999999999999987753
No 222
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=93.68 E-value=0.035 Score=32.16 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=28.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHh
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAI 72 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~l 72 (82)
++|..++|+.+|||++|++++-.++...-...+..+...+
T Consensus 32 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 71 (177)
T 3kkc_A 32 KITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLFHHL 71 (177)
T ss_dssp TCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4699999999999999999987765444333444443333
No 223
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=93.68 E-value=0.083 Score=30.33 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.+||+.+|+++++++++.+
T Consensus 44 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~ 77 (154)
T 2qww_A 44 LAMINVIYSTPGISVADLTKRLIITGSSAAANVD 77 (154)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3456666666789999999999999999998753
No 224
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=93.66 E-value=0.14 Score=28.09 Aligned_cols=31 Identities=3% Similarity=-0.082 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQ 62 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~ 62 (82)
..+|..+||+.+|+|+.++++..+.....++
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~ 47 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRSRGYSP 47 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHTSSCH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHhCcCH
Confidence 4689999999999999999999875433343
No 225
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=93.65 E-value=0.067 Score=32.41 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|+.++|..+|+|+.++++..+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~ 189 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLN 189 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHH
Confidence 468999999999999999998754
No 226
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=93.60 E-value=0.063 Score=32.27 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.+|++..+
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~ 185 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLH 185 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 47999999999999999999853
No 227
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=93.60 E-value=0.089 Score=29.81 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+...-++|+.++|+.+|++++++++..
T Consensus 32 ~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l 64 (144)
T 1lj9_A 32 YLYLVRVCENPGIIQEKIAELIKVDRTTAARAI 64 (144)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHH
Confidence 456666767678999999999999999999874
No 228
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=93.58 E-value=0.073 Score=32.33 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.+|++..+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~ 199 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALA 199 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHH
Confidence 58999999999999999998754
No 229
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=93.58 E-value=0.069 Score=32.45 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 038591 33 KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e 54 (82)
.+|+.++|..+|+|+.+|++..
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l 184 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTAL 184 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHH
Confidence 3899999999999999999874
No 230
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=93.55 E-value=0.18 Score=28.76 Aligned_cols=55 Identities=7% Similarity=0.079 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCCHHHHHH-HhCCCHHHHHHHHcCCC---CC---CHHHHHHHHHHhCCCC
Q 038591 22 PRQIQRARLGKKMSQPDLAN-QINQRPQVVSEYENGKA---VP---NQTVLAKMEKAIGVKL 76 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~-~~gis~~~i~~~e~g~~---~p---~~~~~~~la~~lgv~~ 76 (82)
...|++.....+++|.-||+ -+|.++.+|+.+.+.-. .. .-+...++-..|..+-
T Consensus 33 ~~~ikewL~~~~isQ~~FA~~ILgrsQgtlSdlL~~PkpW~~L~~~GRe~yiRM~nWL~l~e 94 (111)
T 1wh8_A 33 TKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSRPKPWHKLSLKGREPFVRMQLWLNDPH 94 (111)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTSCHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHhccCcCcHHHHHcCCCCHHHHhHhhhHHHHHHHHHhcChH
Confidence 78889999999999999999 77999999999997522 11 2455666666666553
No 231
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=93.51 E-value=0.068 Score=30.74 Aligned_cols=33 Identities=6% Similarity=0.022 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+ ...++|+.+||+.+|++++++++..+
T Consensus 41 ~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~ 73 (151)
T 3kp7_A 41 SHVLNML-SIEALTVGQITEKQGVNKAAVSRRVK 73 (151)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHH
T ss_pred HHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 4556777 78899999999999999999998753
No 232
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=93.50 E-value=0.057 Score=29.14 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 038591 34 MSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~ 55 (82)
+|+.+||+.+|+++++++++.+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~ 52 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIK 52 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 9999999999999999998753
No 233
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=93.49 E-value=0.13 Score=34.88 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|+.++....+|..|||+.+|+|++||+++.+
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~ 75 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITR 75 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 3457788888899999999999999999999743
No 234
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=93.46 E-value=0.08 Score=30.89 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+...-++|+.+||+.+|+++++++++.
T Consensus 49 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 81 (162)
T 3k0l_A 49 FTALSVLAAKPNLSNAKLAERSFIKPQSANKIL 81 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 355666666678999999999999999998874
No 235
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=93.45 E-value=0.04 Score=31.99 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++-.++.
T Consensus 28 ~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (188)
T 3qkx_A 28 QLSMLKLAKEANVAAGTIYLYFKNKD 53 (188)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHSSSHH
T ss_pred cCCHHHHHHHhCCCcchHHHHcCCHH
Confidence 58999999999999999999876543
No 236
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=93.45 E-value=0.092 Score=31.25 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|..++|+.+|||+.||..||.
T Consensus 10 ~~~~i~e~A~~~gvs~~TLR~ye~ 33 (154)
T 2zhg_A 10 ALLTPGEVAKRSGVAVSALHFYES 33 (154)
T ss_dssp CCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 458999999999999999999985
No 237
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=93.42 E-value=0.11 Score=34.90 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|+.++....+|..|||+.+|+|++||+++.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v 51 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIV 51 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHH
Confidence 345777888889999999999999999999974
No 238
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.42 E-value=0.15 Score=28.07 Aligned_cols=33 Identities=18% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHHHhC-CCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGK-KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~-g~s~~elA~~~gis~~~i~~~e 54 (82)
-..|..+...- .+|..+||+.+|+|+++|++..
T Consensus 21 l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L 54 (110)
T 1q1h_A 21 IDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKL 54 (110)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34555554433 6999999999999999999864
No 239
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=93.40 E-value=0.22 Score=30.63 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=25.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
..|+|..++|+.+|+|++|+++|.+...
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~l~~~~ 200 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRIKHDNG 200 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhccc
Confidence 4799999999999999999999987543
No 240
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=93.39 E-value=0.043 Score=32.09 Aligned_cols=27 Identities=4% Similarity=-0.074 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+++++++-.++.
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 47 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKE 47 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 468999999999999999999977643
No 241
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=93.37 E-value=0.1 Score=30.85 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
..++..|+|+.+|||+.||..||.-
T Consensus 15 ~~~~I~evA~~~gvs~~tLR~Ye~~ 39 (148)
T 3gpv_A 15 MYYTIGQVAKMQHLTISQIRYYDKQ 39 (148)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHHT
T ss_pred CceeHHHHHHHHCcCHHHHHHHHHC
Confidence 3589999999999999999999863
No 242
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=93.36 E-value=0.1 Score=29.99 Aligned_cols=34 Identities=3% Similarity=-0.042 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|+++++++++.+
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~ 83 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGERLYLDSATLTPLLK 83 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHH
Confidence 3455666666789999999999999999998753
No 243
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=93.35 E-value=0.071 Score=32.71 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.+|++..+
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR~l~ 208 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISKTLN 208 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHHHHH
Confidence 37999999999999999998864
No 244
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=93.35 E-value=0.1 Score=29.82 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|++++++++..+
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~ 76 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQ 76 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3455666666789999999999999999998743
No 245
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=93.33 E-value=0.11 Score=28.25 Aligned_cols=25 Identities=8% Similarity=0.098 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++..++|+.+|+|+.++++.....
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7899999999999999999997654
No 246
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=93.32 E-value=0.11 Score=30.54 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|++++++++..+
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~ 81 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMVD 81 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 4556666666789999999999999999998743
No 247
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=93.31 E-value=0.18 Score=28.74 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=27.3
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHH
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENGKAVPNQTV 64 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~ 64 (82)
...+|..++|..+|+|+++++++.+.....++..
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G~tp~~ 124 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKATTGMTPKA 124 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHH
Confidence 4579999999999999999999987544444444
No 248
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=93.27 E-value=0.11 Score=34.68 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
.|+.++ ...+|..|||+.+|+|++||+++.
T Consensus 25 il~~l~-~~~~sr~~la~~~gls~~tv~~~v 54 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIA 54 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHH-cCCcCHHHHHHHHCcCHHHHHHHH
Confidence 477888 889999999999999999999974
No 249
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=93.27 E-value=0.16 Score=28.02 Aligned_cols=31 Identities=10% Similarity=0.024 Sum_probs=25.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQ 62 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~ 62 (82)
..++..+||+.+|+|+.++++........++
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 52 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQYLGTVP 52 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHTSSCH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 4689999999999999999999875444443
No 250
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=93.27 E-value=0.12 Score=29.31 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+. ..++|+.+||+.+|++++++++..
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l 71 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANRYFVTQSAITASV 71 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHH
Confidence 34455555 778999999999999999998874
No 251
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=93.27 E-value=0.24 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
..++..++|+.+|+|+.++++.....
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46899999999999999999997643
No 252
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=93.26 E-value=0.17 Score=29.96 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=24.3
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++--.|+|.+|+|+.+|+|.++|.....
T Consensus 151 l~~~~g~s~~EIA~~lgis~~tV~~~l~ 178 (194)
T 1or7_A 151 LRELDGLSYEEIAAIMDCPVGTVRSRIF 178 (194)
T ss_dssp HHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3445799999999999999999998875
No 253
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=93.23 E-value=0.078 Score=32.82 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|+.++|..+|+|+.+|++..+
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~ 215 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLG 215 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHH
Confidence 468999999999999999999864
No 254
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=93.23 E-value=0.11 Score=30.17 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|++++++++..+
T Consensus 55 ~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~ 88 (162)
T 3cjn_A 55 MRALAILSAKDGLPIGTLGIFAVVEQSTLSRALD 88 (162)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHH
Confidence 3455666666789999999999999999998753
No 255
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=93.21 E-value=0.14 Score=30.76 Aligned_cols=34 Identities=9% Similarity=0.110 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
...|..+. ..|+|..++|+.+|+|++||++|.+.
T Consensus 148 ~~~i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~~ 181 (183)
T 1gdt_A 148 RDAVLNMW-QQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 45565544 47999999999999999999999764
No 256
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=93.20 E-value=0.17 Score=30.86 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++-..|+|..|+|+.+|+|.++|.++..
T Consensus 198 l~~~~g~s~~EIA~~lgis~~~V~~~~~ 225 (239)
T 1rp3_A 198 LIFYEELPAKEVAKILETSVSRVSQLKA 225 (239)
T ss_dssp HHHTSCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3445799999999999999999998875
No 257
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=93.18 E-value=0.058 Score=32.68 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|+.++|..+|+|+.+|++..+
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~ 200 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMH 200 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHH
Confidence 357999999999999999999864
No 258
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=93.17 E-value=0.12 Score=29.36 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+.. .++|+.+||+.+|++++++++..+
T Consensus 41 ~~iL~~l~~-~~~t~~eLa~~l~~s~~tvs~~l~ 73 (146)
T 3tgn_A 41 EHILMLLSE-ESLTNSELARRLNVSQAAVTKAIK 73 (146)
T ss_dssp HHHHHHHTT-CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 344444444 449999999999999999998753
No 259
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=93.14 E-value=0.059 Score=32.24 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=24.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVP 60 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p 60 (82)
+.|..++|+.+|||+.+|+++..++...
T Consensus 28 ~~s~~~IA~~aGvs~~tiY~~F~sKe~L 55 (202)
T 2d6y_A 28 GARIDRIAAEARANKQLIYAYYGNKGEL 55 (202)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHHSSHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 6799999999999999999998765433
No 260
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=93.14 E-value=0.039 Score=31.85 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++-.++.
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK~ 49 (170)
T 3egq_A 24 EVSIEEIAREAKVSKSLIFYHFESKQ 49 (170)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cCcHHHHHHHhCCCchhHHHHcCCHH
Confidence 47999999999999999999976654
No 261
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=93.13 E-value=0.045 Score=31.88 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+++++++-.++.
T Consensus 29 ~~tv~~Ia~~agvs~~t~Y~~F~sK~ 54 (195)
T 3ppb_A 29 GTSTATIAREAGVATGTLFHHFPSKE 54 (195)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 57999999999999999999976543
No 262
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=93.13 E-value=0.092 Score=31.99 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|+.++|..+|+|+.+|++..+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~ 202 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLS 202 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHH
Confidence 468999999999999999998754
No 263
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.13 E-value=0.19 Score=28.53 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.7
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..++|+.++|+.+|+++++|++..+
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~ 53 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVS 53 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHH
Confidence 4578999999999999999988643
No 264
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=93.12 E-value=0.04 Score=32.09 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++-.++.
T Consensus 29 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 55 (191)
T 3on4_A 29 NAFSFKDIATAINIKTASIHYHFPSKE 55 (191)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCcchhhhcCCCHH
Confidence 368999999999999999999976543
No 265
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=93.12 E-value=0.097 Score=30.03 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++|+.+||+.+|+++++|++..+
T Consensus 40 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~ 73 (155)
T 1s3j_A 40 LFVLASLKKHGSLKVSEIAERMEVKPSAVTLMAD 73 (155)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 4455666666789999999999999999998753
No 266
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.10 E-value=0.15 Score=33.05 Aligned_cols=34 Identities=12% Similarity=-0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....+.++.+.|+.+|||++|+++..+
T Consensus 270 ~~~i~~~l~~~~gn~~~aA~~Lgi~r~tl~~kl~ 303 (304)
T 1ojl_A 270 KEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4567777888899999999999999999998653
No 267
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=93.09 E-value=0.046 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++-.++
T Consensus 32 ~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (202)
T 3lwj_A 32 NTSIRDIIALSEVGTGTFYNYFVDK 56 (202)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHCSSH
T ss_pred cCCHHHHHHHhCCCchhHHHHcCCH
Confidence 6899999999999999999987654
No 268
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=93.09 E-value=0.084 Score=32.69 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|+.++|..+|+|+.+|++..+
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~ 199 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLA 199 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHH
Confidence 468999999999999999999853
No 269
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=93.09 E-value=0.086 Score=30.95 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.|++.+-.++.
T Consensus 22 ~~~s~~~IA~~agvsk~t~Y~~F~sK~ 48 (190)
T 3vpr_A 22 EATSVQDLAQALGLSKAALYHHFGSKE 48 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 467999999999999999999987643
No 270
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=93.09 E-value=0.077 Score=31.01 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=24.0
Q ss_pred hCCCCHHHHHHHhCC-CHHHHHHHHcC
Q 038591 31 GKKMSQPDLANQINQ-RPQVVSEYENG 56 (82)
Q Consensus 31 ~~g~s~~elA~~~gi-s~~~i~~~e~g 56 (82)
..|.|..++|...|| |.+||++|.+-
T Consensus 26 ~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 26 SSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp HTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 479999999999999 99999999874
No 271
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=93.03 E-value=0.13 Score=28.23 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
..++..++|+.+|+|+.++++.....
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47999999999999999999998654
No 272
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=92.99 E-value=0.1 Score=30.39 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+...-++|+.+||+.+|++++++++..
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l 88 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVMEQSTTSRTV 88 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 45556666678999999999999999999874
No 273
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=92.96 E-value=0.066 Score=32.74 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|+.++|..+|+|+.+|++..+
T Consensus 177 l~~t~~~iA~~lg~sr~tvsR~l~ 200 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLSRAFS 200 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHH
Confidence 357899999999999999999864
No 274
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=92.95 E-value=0.078 Score=31.40 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVP 60 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p 60 (82)
.++|..++|+.+|||+.+++++..++...
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L 64 (207)
T 2rae_A 36 DATSVDEVAEASGIARRTLFRYFPSKNAI 64 (207)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHCSSTTTG
T ss_pred ccCCHHHHHHHhCCCcchHhhhCCCHHHH
Confidence 36899999999999999999998776543
No 275
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=92.93 E-value=0.076 Score=31.55 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAV 59 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~ 59 (82)
.+.|..++|+.+|||+.|++++-.++..
T Consensus 28 ~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~ 55 (204)
T 3anp_C 28 QETTATEIAKAAHVSRGTFFNYYPYKEA 55 (204)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSTHH
T ss_pred ccccHHHHHHHcCCchHHHHHHcCCHHH
Confidence 3579999999999999999999876543
No 276
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=92.92 E-value=0.069 Score=31.57 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++-.++.
T Consensus 36 ~~t~~~Ia~~agvs~~t~Y~~F~sK~ 61 (213)
T 2qtq_A 36 DISLSELSLRSGLNSALVKYYFGNKA 61 (213)
T ss_dssp CCCHHHHHHHHCCCHHHHHHHHSSHH
T ss_pred cccHHHHHHHhCCChhhHhHhcCCHH
Confidence 68999999999999999999987654
No 277
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=92.90 E-value=0.049 Score=31.98 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (203)
T 3f1b_A 34 ETSMDAIAAKAEISKPMLYLYYGSKD 59 (203)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCCSHH
T ss_pred cccHHHHHHHhCCchHHHHHHhCCHH
Confidence 68999999999999999999976543
No 278
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=92.88 E-value=0.053 Score=32.14 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++..++.
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKNKS 59 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCceeehhhcCCHH
Confidence 358999999999999999999976643
No 279
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=92.87 E-value=0.093 Score=32.87 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=21.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+|+.++|..+|+|+.+|+++.+
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~ 239 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILK 239 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 47999999999999999999864
No 280
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=92.85 E-value=0.054 Score=31.67 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++++..++.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 57 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERT 57 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 889999999999999999999976543
No 281
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=92.83 E-value=0.16 Score=30.95 Aligned_cols=31 Identities=13% Similarity=-0.033 Sum_probs=23.4
Q ss_pred HHHHHHhCC--CCHHHHHHHhCCCHHHHHHHHc
Q 038591 25 IQRARLGKK--MSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 25 lk~~r~~~g--~s~~elA~~~gis~~~i~~~e~ 55 (82)
|.......| .|+.|||+.+|++.++++++.+
T Consensus 14 I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~ 46 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIARRFRITPRGALLHLI 46 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHH
Confidence 444434444 8999999999999999888653
No 282
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=92.81 E-value=0.25 Score=28.59 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.0
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
+....++++.++|+.+|+|+++|++..
T Consensus 49 l~~~~~~~~~~la~~l~vs~~tvs~~l 75 (155)
T 2h09_A 49 IREVGEARQVDMAARLGVSQPTVAKML 75 (155)
T ss_dssp HHHHSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHhCCCcCHHHHHHHhCcCHHHHHHHH
Confidence 344567999999999999999999874
No 283
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=92.79 E-value=0.055 Score=32.07 Aligned_cols=27 Identities=7% Similarity=0.041 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++..++.
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F~sK~ 59 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYFESKE 59 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 368999999999999999999976643
No 284
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=92.78 E-value=0.072 Score=31.46 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.+.|..++|+.+|||+.||+++-.+
T Consensus 31 ~~~t~~~IA~~agvsk~tlY~~F~s 55 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWWPN 55 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred ccccHHHHHHHcCCCHHHHHHHCCC
Confidence 3679999999999999999998654
No 285
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=92.76 E-value=0.079 Score=28.56 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e 54 (82)
..++..+||+.+|+|++++++..
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L 57 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHL 57 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHH
Confidence 67899999999999999999874
No 286
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=92.76 E-value=0.069 Score=30.22 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=27.1
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLG--KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~--~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+... .++|+.+||+.++++++++++..+
T Consensus 40 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~ 75 (127)
T 2frh_A 40 FAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVK 75 (127)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 3455666665 689999999999999999998743
No 287
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=92.75 E-value=0.089 Score=30.11 Aligned_cols=33 Identities=21% Similarity=0.163 Sum_probs=21.1
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLG--KKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~--~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+... .++|+.+||+.+|++++++++..
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l 78 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGRRGASITSML 78 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC------CHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHH
Confidence 3456666665 79999999999999999998874
No 288
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=92.73 E-value=0.057 Score=32.09 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y~~F~sK~ 76 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIYYYFKSKE 76 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 47999999999999999999876543
No 289
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=92.72 E-value=0.064 Score=31.53 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++++-.++.
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~ 52 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDNKE 52 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCCHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHH
Confidence 468999999999999999999876543
No 290
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=92.69 E-value=0.038 Score=32.40 Aligned_cols=27 Identities=7% Similarity=-0.028 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++++-.++.
T Consensus 26 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 52 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGIYRHFESKE 52 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSHH
T ss_pred CcCCHHHHHHHhCCCccHHHHhCCCHH
Confidence 468999999999999999999866543
No 291
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=92.69 E-value=0.31 Score=27.19 Aligned_cols=30 Identities=7% Similarity=0.146 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQ 62 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~ 62 (82)
..++..+||+.+|+|+.++++..... ..++
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~-G~s~ 51 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLREE-ETSY 51 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHT-TCCH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHc-CCCH
Confidence 37899999999999999999997654 4444
No 292
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=92.68 E-value=0.051 Score=31.64 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+++++++-.++.
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 53 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHFPSKS 53 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCchHHHHHcCCHH
Confidence 468999999999999999999876543
No 293
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=92.66 E-value=0.13 Score=28.40 Aligned_cols=32 Identities=6% Similarity=-0.033 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|..+. ..+++..+||+.+|+++++|++..+
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4455554 4678999999999999999998753
No 294
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=92.65 E-value=0.079 Score=30.50 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 34 ~~ti~~Ia~~agvs~~t~Y~~F~sK~ 59 (156)
T 3ljl_A 34 KMSYTTLSQQTGVSRTGISHHFPKKT 59 (156)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred hcCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 57999999999999999999987653
No 295
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=92.61 E-value=0.055 Score=31.65 Aligned_cols=26 Identities=8% Similarity=-0.006 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 34 ~~t~~~IA~~agvs~~t~Y~~F~sK~ 59 (191)
T 4aci_A 34 GATVRRLEEATGKSRGAIFHHFGDKE 59 (191)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred cCCHHHHHHHHCCCchHHHHHCCCHH
Confidence 58999999999999999999987643
No 296
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=92.59 E-value=0.12 Score=29.79 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+...-++|+.+||+.+|++++++++..
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l 78 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIV 78 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 34455555567999999999999999999874
No 297
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=92.59 E-value=0.061 Score=31.53 Aligned_cols=27 Identities=11% Similarity=-0.050 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++..++.
T Consensus 27 ~~~t~~~IA~~Agvs~~tly~~F~sK~ 53 (194)
T 3dpj_A 27 AQTSFVDISAAVGISRGNFYYHFKTKD 53 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHcCCHH
Confidence 468999999999999999999976543
No 298
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=92.59 E-value=0.094 Score=30.86 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 27 ~~t~~~Ia~~agvs~~t~Y~~F~sK~ 52 (195)
T 2dg7_A 27 NVTVTDIAERAGLTRRSYFRYFPDKR 52 (195)
T ss_dssp GCCHHHHHHHTTCCHHHHHHHCSSTT
T ss_pred ccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 48999999999999999999987654
No 299
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.58 E-value=0.13 Score=29.12 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=24.4
Q ss_pred HHHHHH-HhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 24 QIQRAR-LGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r-~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
.|..+. ...++|+.++|+.+|++++++++..
T Consensus 31 il~~L~~~~~~~t~~ela~~l~~~~stvs~~l 62 (152)
T 1ku9_A 31 VYAILYLSDKPLTISDIMEELKISKGNVSMSL 62 (152)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 344443 3468999999999999999999874
No 300
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=92.54 E-value=0.25 Score=27.68 Aligned_cols=28 Identities=0% Similarity=0.001 Sum_probs=25.0
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.....++|..|.|++.+||+++|.+|+.
T Consensus 45 ~v~~g~lS~~EAa~ry~Is~~ei~~W~r 72 (101)
T 2oa4_A 45 GVIYGLITLAEAKQTYGLSDEEFNSWVS 72 (101)
T ss_dssp HHHHTTCCHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3456799999999999999999999985
No 301
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=92.54 E-value=0.081 Score=31.38 Aligned_cols=59 Identities=14% Similarity=0.043 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHH-hCCCHHHHHHHHcCCCC------CCHHHHHHHHHHhCCCCcccc
Q 038591 22 PRQIQRARLGKKMSQPDLANQ-INQRPQVVSEYENGKAV------PNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~-~gis~~~i~~~e~g~~~------p~~~~~~~la~~lgv~~~e~~ 80 (82)
...|+...+..+++|.-||+. +|.++.+++.+.+.-.. ...+.+.++-..|..+-++|+
T Consensus 27 ~~~Ik~eLk~~~IsQ~~FA~~VL~rsQGtLS~LLr~PkdPW~~LksGRE~fiRM~NWL~Lpe~eR~ 92 (141)
T 1yse_A 27 YQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEAERD 92 (141)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCGGGCCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHHcCCCCcHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 788999999999999999995 58999999999875332 235667788888887776654
No 302
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=92.53 E-value=0.28 Score=27.02 Aligned_cols=26 Identities=0% Similarity=0.111 Sum_probs=23.3
Q ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 30 LGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 30 ~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..-++|..|+|++.|||++.|..|..
T Consensus 46 ~~g~~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 46 IHGLITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp HTTSSCHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 34678999999999999999999974
No 303
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=92.50 E-value=0.062 Score=31.57 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++.+..++
T Consensus 37 ~~s~~~Ia~~agvs~~t~Y~~F~sK 61 (206)
T 3kz9_A 37 RGGHADIAEIAQVSVATVFNYFPTR 61 (206)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHCCSH
T ss_pred cccHHHHHHHhCCCHHHHHHHcCCH
Confidence 4789999999999999999997654
No 304
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=92.46 E-value=0.11 Score=29.44 Aligned_cols=34 Identities=3% Similarity=-0.028 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+|+++++|++..+
T Consensus 43 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~ 76 (147)
T 1z91_A 43 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLK 76 (147)
T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHH
Confidence 4456666666789999999999999999998743
No 305
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=92.45 E-value=0.064 Score=32.70 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++.+..++.
T Consensus 63 ~~tv~~IA~~AGvs~~t~Y~~F~sKe 88 (229)
T 3bni_A 63 ALSTRAVALRADVPIGSVYRFFGNKR 88 (229)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hccHHHHHHHHCCCchhHHHHcCCHH
Confidence 68999999999999999999976643
No 306
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=92.44 E-value=0.12 Score=32.72 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=20.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHc
Q 038591 34 MSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~ 55 (82)
++..|+|+.+|+|..||..||+
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~ 22 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLR 22 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 5788999999999999999986
No 307
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=92.43 E-value=0.12 Score=30.07 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=19.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++|+.+||+.++++++++++..+
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~ 74 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLE 74 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHH
Confidence 48999999999999999998753
No 308
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=92.43 E-value=0.066 Score=31.73 Aligned_cols=25 Identities=4% Similarity=0.032 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+++++.+-.++
T Consensus 32 ~~ti~~Ia~~agvs~~t~Y~~F~~K 56 (189)
T 3vp5_A 32 EAKIMHIVKALDIPRGSFYQYFEDL 56 (189)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cccHHHHHHHhCCChHHHHHHCCCH
Confidence 5699999999999999999986654
No 309
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=92.41 E-value=0.072 Score=31.06 Aligned_cols=27 Identities=11% Similarity=0.005 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++.+-.++.
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~F~sKe 47 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFHFKSKE 47 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCcHHHHHHcCCHH
Confidence 367999999999999999999976543
No 310
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=92.40 E-value=0.2 Score=28.63 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=25.6
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLG-KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~-~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+... .++|+.+||+.++++++++++..+
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~ 76 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVD 76 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHH
Confidence 3444555443 368999999999999999998743
No 311
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=92.39 E-value=0.055 Score=30.83 Aligned_cols=32 Identities=6% Similarity=0.049 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+....++|+.+||+.+++++++++++.
T Consensus 40 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l 71 (140)
T 3hsr_A 40 IVLMAIENDEKLNIKKLGERVFLDSGTLTPLL 71 (140)
T ss_dssp HHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHH
Confidence 34444555668999999999999999999874
No 312
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=92.35 E-value=0.1 Score=28.10 Aligned_cols=33 Identities=6% Similarity=0.005 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCHHHH----HHHhCCCHHHHHHHHc
Q 038591 23 RQIQRARLGKKMSQPDL----ANQINQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~el----A~~~gis~~~i~~~e~ 55 (82)
..|..+....++++.+| |+.++++++++++..+
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~ 48 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKK 48 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 44555555568999999 8999999999998743
No 313
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=92.31 E-value=0.11 Score=31.10 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+++++.+-.++.
T Consensus 40 ~~tv~~Ia~~Agvs~~t~Y~~F~~K~ 65 (185)
T 3o60_A 40 SISIKDLCEQARVSRATFYRHHKEII 65 (185)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSTH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 57999999999999999999987653
No 314
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=92.31 E-value=0.069 Score=31.92 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 50 ~~t~~~IA~~aGvs~~t~Y~~F~sK~ 75 (222)
T 3bru_A 50 SVGVDEILKAARVPKGSFYHYFRNKA 75 (222)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCcHHHHHHHhCCCcchhhhhCCCHH
Confidence 57999999999999999999976543
No 315
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=92.30 E-value=0.068 Score=31.67 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++..++.
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~ 63 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYFPSKE 63 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSSHH
T ss_pred chhhHHHHHHHHCCChhHHHHhCCCHH
Confidence 468999999999999999999976643
No 316
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=92.26 E-value=0.069 Score=31.89 Aligned_cols=27 Identities=11% Similarity=0.024 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++.+..++.
T Consensus 29 ~~~s~~~IA~~aGvs~~t~Y~~F~sKe 55 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDALYWHFKNKE 55 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHHCcCHHHHHHHCCCHH
Confidence 467999999999999999999876543
No 317
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=92.25 E-value=0.07 Score=31.80 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
+.|..++|+.+|||+.+|+++..++.
T Consensus 37 ~~t~~~IA~~agvs~~t~Y~~F~sK~ 62 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLIRYYFGSKE 62 (218)
T ss_dssp CCCHHHHHHHHTSCTHHHHHHHSSHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 47999999999999999999987654
No 318
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=92.24 E-value=0.093 Score=31.38 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAV 59 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~ 59 (82)
.+.|..++|+.+|||+.+|+++-.++..
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~ 58 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHFTDKET 58 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4689999999999999999999876543
No 319
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=92.24 E-value=0.12 Score=30.19 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++-.++.
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKE 53 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 68999999999999999999976543
No 320
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=92.24 E-value=0.23 Score=29.88 Aligned_cols=34 Identities=9% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARL--GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~--~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+.. ..++|+.+||+.+|++++++++..+
T Consensus 44 ~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~ 79 (189)
T 3nqo_A 44 YMTILSILHLPEEETTLNNIARKMGTSKQNINRLVA 79 (189)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 344555554 4589999999999999999998753
No 321
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=92.23 E-value=0.084 Score=30.78 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++..++
T Consensus 27 ~~t~~~IA~~agvs~~tlY~~F~sK 51 (186)
T 2jj7_A 27 GTSIQEIAKEAKVNVAMASYYFNGK 51 (186)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred cCCHHHHHHHhCCChhhhhhhcCCH
Confidence 5899999999999999999998654
No 322
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=92.22 E-value=0.21 Score=26.02 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHHHHh--CCCCHHHHHHHh-----CCCHHHHHHHHc
Q 038591 23 RQIQRARLG--KKMSQPDLANQI-----NQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~~--~g~s~~elA~~~-----gis~~~i~~~e~ 55 (82)
..|..+... ..+|..||++.+ ++|.+||++..+
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 344445443 579999999999 999999998753
No 323
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=92.19 E-value=0.35 Score=27.23 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhC--CCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQIN--QRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~g--is~~~i~~~e~ 55 (82)
.|..+.....+|..++|..+| +|.+||++|..
T Consensus 68 ~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 68 NVIRAASNSCKTARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp HHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence 344445667799999999999 89999999985
No 324
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=92.16 E-value=0.073 Score=31.68 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++-.++.
T Consensus 31 ~~ti~~Ia~~agvs~~t~Y~~F~sK~ 56 (216)
T 3f0c_A 31 KTTMNEIASDVGMGKASLYYYFPDKE 56 (216)
T ss_dssp SCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 68999999999999999999976543
No 325
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=92.11 E-value=0.07 Score=31.43 Aligned_cols=27 Identities=4% Similarity=0.099 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++..++.
T Consensus 27 ~~~t~~~IA~~agvs~~t~Y~~F~sK~ 53 (195)
T 3frq_A 27 IEFTLSGVAKEVGLSRAALIQRFTNRD 53 (195)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 367999999999999999999987653
No 326
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=92.11 E-value=0.4 Score=29.98 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=31.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
..|+|.+|+|+.+|+|..||...... -...+...+..+|..+|
T Consensus 188 ~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 234 (237)
T 3szt_A 188 AVGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIG 234 (237)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 68999999999999999999887653 22345555555555554
No 327
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=92.11 E-value=0.053 Score=32.07 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+++..++
T Consensus 37 ~~~s~~~IA~~aGvs~~tlY~~F~sK 62 (212)
T 3loc_A 37 HGTRLEQIAELAGVSKTNLLYYFPSK 62 (212)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHSSSH
T ss_pred ccCCHHHHHHHHCcCHHHHhhhCCCH
Confidence 46899999999999999999998765
No 328
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=92.10 E-value=0.26 Score=30.32 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCCCCCC
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYENGKAVPN 61 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~~~p~ 61 (82)
.+..+++..-+|..|||+.+|+|.+||.+=..--..|.
T Consensus 17 i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 17 IRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 34555555668999999999999999988655434444
No 329
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=92.09 E-value=0.078 Score=31.24 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++..++
T Consensus 24 ~~t~~~Ia~~agvs~~t~Y~~F~sK 48 (185)
T 2yve_A 24 TLSYDSLAEATGLSKSGLIYHFPSR 48 (185)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHCSSH
T ss_pred hccHHHHHHHhCCChHHHHHhCcCH
Confidence 5799999999999999999987654
No 330
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=92.09 E-value=0.052 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++-.++.
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 53 (195)
T 3pas_A 27 SATSVGKIAKAAGLSPATLYIYYEDKE 53 (195)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred HhcCHHHHHHHhCCCchHHHHHcCCHH
Confidence 368999999999999999999976643
No 331
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=92.08 E-value=0.065 Score=31.98 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++-.++.
T Consensus 22 ~~~s~~~IA~~Agvs~~t~Y~~F~sK~ 48 (212)
T 3rh2_A 22 RTITTNHIAAHLDISPGNLYYHFRNKE 48 (212)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 358999999999999999999876543
No 332
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=92.07 E-value=0.77 Score=28.93 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=32.7
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
..|+|.+|+|+.+|+|..||...... -+..+...+..+|...|
T Consensus 210 ~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~~a~~~g 256 (258)
T 3clo_A 210 RKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMK 256 (258)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 68999999999999999999887643 23445666666666555
No 333
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=92.00 E-value=0.18 Score=29.69 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=26.2
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARL-GKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~-~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.. .-++|+.+||+.++++++++++..
T Consensus 56 ~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l 89 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTL 89 (166)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHH
Confidence 344555555 457999999999999999999874
No 334
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=91.97 E-value=0.13 Score=30.74 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVP 60 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p 60 (82)
.=+|..|+|+.+||+.++|+++.+....+
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~L~ 58 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGHLV 58 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSCC
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCCce
Confidence 45799999999999999999998765443
No 335
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=91.96 E-value=0.42 Score=28.44 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHh-CCCHHHHHHHHcCCC-----CCCHHHHHHHHHHhCC
Q 038591 22 PRQIQRARLGKKMSQPDLANQI-NQRPQVVSEYENGKA-----VPNQTVLAKMEKAIGV 74 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~-gis~~~i~~~e~g~~-----~p~~~~~~~la~~lgv 74 (82)
...|+..+...+++|..||+.+ |+++.+++.+.+.-. ....+....+-..|..
T Consensus 10 ~~~i~~~l~~~~i~q~~fa~~ilg~sq~~ls~~l~~pkpw~~l~~g~~~y~rm~~WL~~ 68 (164)
T 2d5v_A 10 AQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQE 68 (164)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCchHHHHHHHhcCCchhHHHHcCCCCCHHHHcccchHHHHHHHHHhc
Confidence 6788999999999999999965 999999999997421 1233444445555543
No 336
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=91.96 E-value=0.057 Score=31.79 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 40 ~~t~~~Ia~~agvs~~t~Y~~F~~K~ 65 (203)
T 3mnl_A 40 AVQMRAVADRADVAVGTLYRYFPSKV 65 (203)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHcCCChhHHHHHcCCHH
Confidence 68999999999999999999976644
No 337
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=91.92 E-value=0.2 Score=28.42 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....+ |+.+||+.+|++++++++..+
T Consensus 40 ~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~ 72 (144)
T 3f3x_A 40 FSILKATSEEPR-SMVYLANRYFVTQSAITAAVD 72 (144)
T ss_dssp HHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHH
Confidence 345555655556 999999999999999998753
No 338
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=91.89 E-value=0.14 Score=29.95 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=23.9
Q ss_pred HHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 28 ARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 28 ~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++--.|+|.+|+|+.+|+|..||.....
T Consensus 104 L~~~~g~s~~EIA~~lgis~~tV~~~l~ 131 (157)
T 2lfw_A 104 LTAMEGFSPEDAAYLIEVDTSEVETLVT 131 (157)
T ss_dssp TTSSSCCCHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4456799999999999999999988754
No 339
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=91.88 E-value=0.06 Score=31.68 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+.+++++-.++
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F~sK 61 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRFASGR 61 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HhccHHHHHHHhCCCHHHHHHHcCCH
Confidence 46899999999999999999997654
No 340
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=91.87 E-value=0.12 Score=30.88 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+|+++..++.
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe 60 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRD 60 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 368999999999999999999987643
No 341
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=91.86 E-value=0.077 Score=31.50 Aligned_cols=26 Identities=12% Similarity=0.029 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+|+++..++.
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQ 57 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 68999999999999999999976543
No 342
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=91.85 E-value=0.059 Score=31.87 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++.+..++.
T Consensus 33 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 59 (215)
T 3e7q_A 33 QGASVRKICAEAGVSVGLINHHYDGKD 59 (215)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 368999999999999999999976543
No 343
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=91.83 E-value=0.088 Score=31.33 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++.+-.++.
T Consensus 33 ~~~s~~~IA~~agvs~~tlY~~F~sKe 59 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHFDSKE 59 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCSCHH
T ss_pred hhcCHHHHHHHhCCCchhHHHhcCCHH
Confidence 468999999999999999999976643
No 344
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.81 E-value=0.21 Score=30.66 Aligned_cols=34 Identities=9% Similarity=-0.082 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+...-++|+.+||+.+++++++++++.+
T Consensus 51 ~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~ 84 (207)
T 2fxa_A 51 HHILWIAYQLNGASISEIAKFGVMHVSTAFNFSK 84 (207)
T ss_dssp HHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 4556666666799999999999999999988753
No 345
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=91.80 E-value=0.071 Score=31.80 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++.+-.++.
T Consensus 31 ~~~s~~~IA~~agvs~~t~Y~hF~~Ke 57 (198)
T 3cjd_A 31 ASLRARELARQADCAVGAIYTHFQDLN 57 (198)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred hhcCHHHHHHHhCCCccHHHHHhCCHH
Confidence 368999999999999999999876643
No 346
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=91.80 E-value=0.092 Score=31.09 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+.+..++.
T Consensus 29 ~~~s~~~IA~~aGvs~gtlY~yF~sKe 55 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGALSHYFAGKD 55 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhCcCHH
Confidence 468999999999999999999976543
No 347
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=91.80 E-value=0.031 Score=33.22 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=0.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...+|++++|..+|+++.+++++.+
T Consensus 166 ~~~~t~~~iA~~lG~sretlsR~l~ 190 (194)
T 3dn7_A 166 IQRVPQYLLASYLGFTPEYLSEIRK 190 (194)
T ss_dssp -------------------------
T ss_pred HHHCCHHHHHHHhCCCHHHHHHHHH
Confidence 3478999999999999999999865
No 348
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=91.79 E-value=0.087 Score=31.70 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
+.|..++|+.+|||+.+|+++..++.
T Consensus 44 ~~s~~~IA~~aGvskgtlY~yF~sKe 69 (214)
T 2oer_A 44 RFTTARVAERAGVSIGSLYQYFPNKA 69 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cccHHHHHHHhCCCCchHHHhCCCHH
Confidence 68999999999999999999976643
No 349
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=91.76 E-value=0.056 Score=31.92 Aligned_cols=26 Identities=12% Similarity=0.080 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+++++.+..++.
T Consensus 29 ~~ti~~IA~~agvs~~t~Y~~F~sK~ 54 (193)
T 2dg8_A 29 RVSHRRIAQRAGVPLGSMTYHFTGIE 54 (193)
T ss_dssp GCCHHHHHHHHTSCTHHHHHHCSSHH
T ss_pred hccHHHHHHHhCCCchhhheeCCCHH
Confidence 58999999999999999999876543
No 350
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=91.73 E-value=0.073 Score=31.90 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+++-.++.
T Consensus 27 ~~~s~~~IA~~AGvs~gt~Y~yF~sKe 53 (206)
T 1vi0_A 27 HQSQVSKIAKQAGVADGTIYLYFKNKE 53 (206)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 367999999999999999999976643
No 351
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=91.71 E-value=0.11 Score=31.04 Aligned_cols=27 Identities=15% Similarity=0.275 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+|+.+..++.
T Consensus 38 ~~~s~~~IA~~aGvs~~tlY~~F~sK~ 64 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYGSKE 64 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHSSHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 579999999999999999999987643
No 352
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=91.69 E-value=0.052 Score=32.19 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++.+-.++.
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~ 70 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFPSKT 70 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCSSHH
T ss_pred hhcCHHHHHHHhCCChhHHHHHCCCHH
Confidence 358999999999999999999876543
No 353
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=91.68 E-value=0.08 Score=31.83 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVP 60 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p 60 (82)
.+.|..++|+.+|||+.+|+.+..++...
T Consensus 22 ~~~s~~~IA~~AGvskgtlY~hF~sKe~L 50 (208)
T 2g3b_A 22 RGLRVNDVAEVAGVSPGLLYYHFKDRIGL 50 (208)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHHCSHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 46899999999999999999998765443
No 354
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=91.67 E-value=0.059 Score=31.70 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+++++-.++
T Consensus 30 ~~~s~~~Ia~~agvs~~t~Y~~F~sK 55 (203)
T 3b81_A 30 ENTTLAFIINKLGISKGALYHYFSSK 55 (203)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred ccCcHHHHHHHhCCCchhHHHHcCCH
Confidence 36899999999999999999986553
No 355
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=91.67 E-value=0.078 Score=31.68 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 43 ~~t~~~IA~~agvs~~t~Y~~F~sK~ 68 (214)
T 2zb9_A 43 QLTFERVARVSGVSKTTLYKWWPSKG 68 (214)
T ss_dssp GCCHHHHHHHHCCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCCHH
Confidence 68999999999999999999976643
No 356
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=91.61 E-value=0.079 Score=31.28 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
+.|..++|+.+|||+.+++++..++
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK 59 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSR 59 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCH
Confidence 6899999999999999999997654
No 357
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=91.57 E-value=0.19 Score=29.31 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=25.4
Q ss_pred HHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 23 RQIQRARL-GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~-~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|..+-. ..+.+|.+||+.+|+++++++++.+
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~ 68 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLD 68 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 34455533 4678999999999999999998753
No 358
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=91.54 E-value=0.082 Score=31.29 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 28 ~~t~~~IA~~agvs~~tlY~~F~sK~ 53 (199)
T 2o7t_A 28 SLTMENIAEQAGVGVATLYRNFPDRF 53 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 57999999999999999999976543
No 359
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=91.53 E-value=0.12 Score=30.92 Aligned_cols=26 Identities=19% Similarity=0.107 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+.+..++
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHYKNK 55 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCCH
Confidence 35799999999999999999986543
No 360
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=91.53 E-value=0.11 Score=30.85 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++++-.++.
T Consensus 26 ~~ts~~~IA~~aGvs~gtlY~~F~sKe 52 (197)
T 2gen_A 26 DATTIEMIRDRSGASIGSLYHHFGNKE 52 (197)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTCSHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHCCCHH
Confidence 357999999999999999999976543
No 361
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=91.49 E-value=0.27 Score=27.86 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.1
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..+++..++|+.+|+|++++++..
T Consensus 57 ~~~~s~~ela~~lgis~stvs~~L 80 (122)
T 1r1t_A 57 RSELCVGDLAQAIGVSESAVSHQL 80 (122)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 346899999999999999999864
No 362
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=91.48 E-value=0.18 Score=30.08 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+++-.++
T Consensus 30 ~~ts~~~IA~~aGvsk~tlY~~F~sK 55 (202)
T 2i10_A 30 EGTSITDLTKALGINPPSLYAAFGSK 55 (202)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSH
T ss_pred ccCCHHHHHHHhCCChHHHHHHhCCH
Confidence 46899999999999999999997654
No 363
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=91.47 E-value=0.081 Score=31.35 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 46 ~~t~~~Ia~~agvs~~t~Y~~F~sK~ 71 (217)
T 3mvp_A 46 NVTTNEIAKKADVSVGTLYAYFASKE 71 (217)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred ccCHHHHHHHhCCChhHHHHHcCCHH
Confidence 68999999999999999999976643
No 364
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=91.47 E-value=0.094 Score=31.70 Aligned_cols=26 Identities=8% Similarity=0.075 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
+.|..++|+.+|||+.+|+.+..++.
T Consensus 55 ~~t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 55 SVGIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 58999999999999999999976643
No 365
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.47 E-value=0.19 Score=27.86 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhC----CCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQIN----QRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~g----is~~~i~~~e 54 (82)
...|..+....++|+.+||+.++ ++++||+++.
T Consensus 13 ~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l 49 (123)
T 1okr_A 13 WEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLI 49 (123)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHH
Confidence 34556666678999999999999 8999999874
No 366
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=91.45 E-value=0.25 Score=27.90 Aligned_cols=33 Identities=15% Similarity=0.031 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHh--CCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQI--NQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~--gis~~~i~~~e 54 (82)
...|..++..-.+|..+||+.+ |+|+++|++..
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL 50 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRL 50 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHH
Confidence 5567777777899999999999 99999999864
No 367
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=91.42 E-value=0.18 Score=28.26 Aligned_cols=31 Identities=13% Similarity=-0.027 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+. ...++..+||+.+|+|++++++..+
T Consensus 26 IL~~L~-~~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 26 ILVALL-DGVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp HHHHHH-TTCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444 4568999999999999999998743
No 368
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=91.40 E-value=0.083 Score=31.32 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++.+-.++.
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F~sKe 57 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHFGDKK 57 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 367999999999999999999987654
No 369
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=91.39 E-value=0.085 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+....++|+.++|+.+|++++++++..
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 68 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMI 68 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHH
Confidence 445566666678999999999999999988874
No 370
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=91.39 E-value=0.39 Score=29.82 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=31.9
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
..|+|.+|+|+.+|+|..||...... -...+...+..+|..+|
T Consensus 188 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 234 (236)
T 2q0o_A 188 SKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRG 234 (236)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 58999999999999999999887653 12345555566665555
No 371
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=91.34 E-value=0.084 Score=32.20 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 33 ~~tv~~IA~~agvs~~t~Y~~F~sK~ 58 (231)
T 2qib_A 33 EVSIDEIASAAGISRPLVYHYFPGKL 58 (231)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred hcCHHHHHHHhCCCHHHHHHHCCCHH
Confidence 47999999999999999999976543
No 372
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=91.26 E-value=0.089 Score=31.79 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++-.++.
T Consensus 25 ~~t~~~IA~~Agvs~~t~Y~~F~sK~ 50 (228)
T 3nnr_A 25 NITTNHIAAHLAISPGNLYYHFRNKS 50 (228)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hcCHHHHHHHhCCCCccchhcCCCHH
Confidence 58999999999999999999876643
No 373
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=91.26 E-value=0.09 Score=31.36 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+++..++.
T Consensus 28 ~~~s~~~IA~~AGvs~gtlY~~F~sKe 54 (203)
T 2np5_A 28 EGASVREVAKRAGVSIGAVQHHFSTKD 54 (203)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred hhccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 368999999999999999999876543
No 374
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=91.25 E-value=0.046 Score=31.86 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++-.++
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYLYFKNK 54 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred cCCHHHHHHHhCCcHHHHHHHhCCH
Confidence 5899999999999999999986654
No 375
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=91.19 E-value=0.056 Score=31.59 Aligned_cols=25 Identities=8% Similarity=0.070 Sum_probs=22.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++-.++
T Consensus 30 ~~t~~~IA~~agvs~~tlY~~F~sK 54 (197)
T 3rd3_A 30 GVGLNEILQSAGVPKGSFYHYFKSK 54 (197)
T ss_dssp TCCHHHHHHHHTCCHHHHTTTCSCH
T ss_pred cCCHHHHHHHhCCChhhHHHHcCCH
Confidence 5799999999999999999986554
No 376
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.16 E-value=0.29 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+. ...+|..+||+.+|+|++++++..
T Consensus 24 ~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l 54 (192)
T 1uly_A 24 KILKLLR-NKEMTISQLSEILGKTPQTIYHHI 54 (192)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHH
Confidence 3455555 578999999999999999998864
No 377
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=91.16 E-value=0.092 Score=32.07 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+|+++..++.
T Consensus 64 ~~t~~~IA~~aGvs~~tlY~~F~sK~ 89 (236)
T 3q0w_A 64 DISVDDLAKGAGISRPTFYFYFPSKE 89 (236)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHhCCcHHHHHHHCCCHH
Confidence 46999999999999999999977643
No 378
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=91.16 E-value=0.14 Score=31.48 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=20.0
Q ss_pred CCCHHHHHHHhCCCH-HHHHHHH
Q 038591 33 KMSQPDLANQINQRP-QVVSEYE 54 (82)
Q Consensus 33 g~s~~elA~~~gis~-~~i~~~e 54 (82)
.+|+.+||..+|+|+ .+|++..
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l 191 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRII 191 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHHHHH
Confidence 789999999999999 6999874
No 379
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=91.15 E-value=0.11 Score=31.45 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+.+..++.
T Consensus 33 ~~~s~~~IA~~AGvs~~tlY~~F~sKe 59 (208)
T 3v6g_A 33 GGLSHRRVAAEANVPVGSTTYYFNDLD 59 (208)
T ss_dssp TCCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCchhHHHHcCCHH
Confidence 468999999999999999999976543
No 380
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=91.14 E-value=0.34 Score=30.53 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=25.0
Q ss_pred HHHHHHHhC-CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 24 QIQRARLGK-KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 24 ~lk~~r~~~-g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.|..+.... ++|..|||+.+|++++|++++.+
T Consensus 13 iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 13 ILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp HHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444433 69999999999999999999753
No 381
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=91.13 E-value=0.12 Score=30.98 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
+.|..++|+.+|||+.+++++..++
T Consensus 42 ~~s~~~IA~~AGVsk~tlY~~F~sK 66 (207)
T 3bjb_A 42 RVQMHEVAKRAGVAIGTLYRYFPSK 66 (207)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCH
Confidence 4789999999999999999986553
No 382
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=91.12 E-value=0.47 Score=32.25 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC-CCCCHHHHHHHHHHhCCCCccc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGK-AVPNQTVLAKMEKAIGVKLRVK 79 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~-~~p~~~~~~~la~~lgv~~~e~ 79 (82)
.-+|--.+..+.+|..|+|...|+...-+.++..+. ..|....+..||..|+|.+...
T Consensus 5 ~frl~hwmnark~t~~e~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~l~~~l~v~~~qi 63 (443)
T 3g7d_A 5 PFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEANEPDPAAATALAEALSVEPSQL 63 (443)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHC--------CHHHHHHHHHTTCCGGGT
T ss_pred hhhHHHhhhhhccccHHHHhhcCCCHHHHHHHhcCcccCCCHHHHHHHHHHhcCChHHh
Confidence 345677788899999999999999999999999875 4688889999999999998653
No 383
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.11 E-value=0.2 Score=26.74 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHH-HHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQ-VVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~-~i~~~e 54 (82)
...|..+...-+.|..++|+.+||+.. +|.+..
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL 47 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVL 47 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHH
Confidence 345566667778999999999999998 777654
No 384
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=91.09 E-value=0.53 Score=27.63 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
...+..+....|.+..++|+.+|+|+.|++++.+..
T Consensus 145 ~~~~~~~~~~~~~~~~~ia~~l~is~~tv~~~l~~~ 180 (184)
T 3rqi_A 145 WEHIQRVLAENNNNISATARALNMHRRTLQRKLAKK 180 (184)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHCC-
T ss_pred HHHHHHHHHhccccHHHHHHHcCCcHHHHHHHHHhc
Confidence 566777777889999999999999999999998753
No 385
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=91.08 E-value=0.072 Score=31.76 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+.+..++
T Consensus 33 ~~~s~~~IA~~agvsk~tlY~yF~sK 58 (199)
T 3crj_A 33 ADLTIQRIADEYGKSTAAVHYYYDTK 58 (199)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred ccCCHHHHHHHhCCChhHHhhhcCCH
Confidence 46899999999999999999986554
No 386
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=91.02 E-value=0.08 Score=31.53 Aligned_cols=27 Identities=11% Similarity=0.030 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+++..++.
T Consensus 31 ~~ts~~~IA~~agvs~gtlY~yF~sKe 57 (205)
T 1rkt_A 31 ELTTMKDVVEESGFSRGGVYLYFSSTE 57 (205)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSCHH
T ss_pred ccCCHHHHHHHHCCCcchhhhhCCCHH
Confidence 468999999999999999999876543
No 387
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=90.96 E-value=0.11 Score=31.48 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=28.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHH
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEK 70 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~ 70 (82)
++|..++|+.+|||+.+|+.+..++...-...+..+..
T Consensus 60 ~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~v~~~~~~ 97 (225)
T 2id3_A 60 ALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAE 97 (225)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999987654433333333333
No 388
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=90.96 E-value=0.074 Score=31.57 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+.+++++..++
T Consensus 29 ~~~ti~~Ia~~agvs~~t~Y~~F~sK 54 (216)
T 3s5r_A 29 AATTMAEIAASVGVNPAMIHYYFKTR 54 (216)
T ss_dssp TTCCHHHHHHTTTCCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHcCCH
Confidence 46899999999999999999997654
No 389
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=90.85 E-value=0.08 Score=32.14 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+|+++..++.
T Consensus 49 ~~~s~~~IA~~aGvs~~tlY~~F~sK~ 75 (226)
T 2pz9_A 49 AGARVDRIAKQARTSKERVYAYFRSKE 75 (226)
T ss_dssp HHCCHHHHHHHTTSCHHHHHHHCSSHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHcCCHH
Confidence 368999999999999999999976643
No 390
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=90.83 E-value=0.53 Score=27.95 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHH-HHhCCCCHHHHHHHh-----CCCHHHHHHHHc
Q 038591 23 RQIQRA-RLGKKMSQPDLANQI-----NQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~-r~~~g~s~~elA~~~-----gis~~~i~~~e~ 55 (82)
..|+++ .+..-.||.||++.+ ++|+.||++..+
T Consensus 8 ~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 8 IKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 445555 556678999999999 999999999976
No 391
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=90.83 E-value=0.051 Score=31.64 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++.+-.++
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK 52 (183)
T 1zk8_A 28 EVTLASLAQTLGVRSPSLYNHVKGL 52 (183)
T ss_dssp GCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred ccCHHHHHHHcCCCchHHHHHcCCH
Confidence 5899999999999999999986654
No 392
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=90.80 E-value=0.17 Score=30.61 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+|+.+..++
T Consensus 59 ~~tv~~IA~~AGvs~~tlY~~F~sK 83 (214)
T 2guh_A 59 EITLKDIAEDAGVSAPLIIKYFGSK 83 (214)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHSSH
T ss_pred hcCHHHHHHHhCCCHHHHHHHcCCH
Confidence 4799999999999999999997654
No 393
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=90.76 E-value=0.11 Score=31.16 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+.+..++.
T Consensus 28 ~~~s~~~IA~~aGvs~gtlY~yF~sKe 54 (209)
T 2gfn_A 28 SAVTTRAVAEESGWSTGVLNHYFGSRH 54 (209)
T ss_dssp GGCCHHHHHHHHSSCHHHHHHHTSSHH
T ss_pred ccCCHHHHHHHHCCCcchHHhcCCCHH
Confidence 468999999999999999999976543
No 394
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=90.76 E-value=0.12 Score=31.74 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=23.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+|+.+..++.
T Consensus 43 ~~s~~~IA~~agvs~~tlY~~F~sKe 68 (231)
T 2zcx_A 43 EITLTDIAATVGMHKSALLRYFETRE 68 (231)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred cCCHHHHHHHhCCCHHHHHHhCCCHH
Confidence 68999999999999999999976543
No 395
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=90.73 E-value=0.11 Score=32.02 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEK 70 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~ 70 (82)
.+.|..++|+.+|||+.+|+++..++...=...+..+..
T Consensus 37 ~~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~av~~~~~~ 75 (251)
T 3npi_A 37 SDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVR 75 (251)
T ss_dssp HHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368999999999999999999987764443334444333
No 396
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=90.67 E-value=0.12 Score=30.42 Aligned_cols=26 Identities=4% Similarity=-0.041 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
..|..++|+.+|||+.+|+++..++.
T Consensus 34 ~~s~~~IA~~agvs~~tlY~~F~sK~ 59 (194)
T 2q24_A 34 DAHLERIAREAGVGSGTLYRNFPTRE 59 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHCCSHH
T ss_pred CCCHHHHHHHhCCChHHHHHHcCCHH
Confidence 37999999999999999999976543
No 397
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=90.67 E-value=0.047 Score=36.25 Aligned_cols=34 Identities=6% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+....++||.+||+.+|+|++||++..+
T Consensus 23 ~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~ 56 (345)
T 2o0m_A 23 FQILRNIYWMQPIGRRSLSETMGITERVLRTETD 56 (345)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3456666777899999999999999999998854
No 398
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.65 E-value=0.12 Score=27.47 Aligned_cols=27 Identities=7% Similarity=0.099 Sum_probs=21.7
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 29 RLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 29 r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
......|..++|+++|++.+.|.++..
T Consensus 25 ~~~~~~Ta~~IAkkLg~sK~~vNr~LY 51 (75)
T 1sfu_A 25 NTNDYTTAISLSNRLKINKKKINQQLY 51 (75)
T ss_dssp CTTCEECHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHCCCHHHHHHHHH
Confidence 334447889999999999999988753
No 399
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=90.63 E-value=0.51 Score=29.27 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=31.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIG 73 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lg 73 (82)
..|+|.+|+|+.+|+|..||...... -...+...+..+|..+|
T Consensus 186 ~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~g 232 (234)
T 1l3l_A 186 AVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRK 232 (234)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcC
Confidence 58999999999999999999887643 12345555556655554
No 400
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=90.59 E-value=0.048 Score=33.18 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=0.0
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
..|+|..++|+.+|||++|+++|.+...
T Consensus 156 ~~G~s~~~Ia~~l~vs~~Tvyr~l~~~~ 183 (193)
T 3uj3_X 156 AQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp ----------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHhh
Confidence 3689999999999999999999987643
No 401
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=90.58 E-value=0.14 Score=30.87 Aligned_cols=27 Identities=4% Similarity=-0.032 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++.+..++.
T Consensus 28 ~~ts~~~IA~~AGvskgtlY~~F~sKe 54 (215)
T 1ui5_A 28 ESTTLSEIVAHAGVTKGALYFHFAAKE 54 (215)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCchhhHhhCCCHH
Confidence 467999999999999999999876543
No 402
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=90.58 E-value=0.086 Score=30.81 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+.+++++-.++
T Consensus 30 ~~~tv~~Ia~~agvs~~t~Y~~F~sK 55 (196)
T 3he0_A 30 QGLSMQKLANEAGVAAGTIYRYFSDK 55 (196)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSH
T ss_pred ccCCHHHHHHHhCCCcchHHHhcCCH
Confidence 46899999999999999999976554
No 403
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=90.56 E-value=0.11 Score=29.39 Aligned_cols=33 Identities=6% Similarity=-0.080 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+....++|+.++|+.+|++++++++..
T Consensus 40 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l 72 (142)
T 2bv6_A 40 FLVLTILWDESPVNVKKVVTELALDTGTVSPLL 72 (142)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHH
Confidence 345556666667999999999999999988874
No 404
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=90.56 E-value=0.048 Score=32.05 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++-.++.
T Consensus 30 ~~~ti~~IA~~agvs~~t~Y~~F~sK~ 56 (204)
T 3eup_A 30 AGTSLTDLTEATNLTKGSIYGNFENKE 56 (204)
T ss_dssp HHCCHHHHHHHHTCCHHHHTTTSSSHH
T ss_pred ccCCHHHHHHHhCCCcHHHHHhCCCHH
Confidence 368999999999999999999866543
No 405
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=90.53 E-value=0.086 Score=31.66 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+++..++.
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe 56 (219)
T 2w53_A 30 ARTTLEMIGARAGYTRGAVYWHFKNKS 56 (219)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred ccCCHHHHHHHhCCCchHHhhcCCCHH
Confidence 468999999999999999999876543
No 406
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=90.40 E-value=0.72 Score=25.43 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHHHHHh------CCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLG------KKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~------~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+... ..+++.+||+.++++++++++..
T Consensus 20 ~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l 57 (96)
T 2obp_A 20 EVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVL 57 (96)
T ss_dssp HHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHH
Confidence 445556555 56999999999999999998864
No 407
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=90.37 E-value=0.1 Score=31.08 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+++.+-.++.
T Consensus 24 ~~~s~~~IA~~AgvskgtlY~yF~sKe 50 (202)
T 2id6_A 24 DRATTDEIAEKAGVAKGLIFHYFKNKE 50 (202)
T ss_dssp HHCCHHHHHHHHTCCTHHHHHHHSSHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 368999999999999999999987643
No 408
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=90.34 E-value=0.12 Score=31.91 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+|+++..++.
T Consensus 63 ~~t~~~IA~~aGvs~~tlY~~F~sK~ 88 (255)
T 3g1o_A 63 DISVDDLAKGAGISRPTFYFYFPSKE 88 (255)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHH
Confidence 47999999999999999999976643
No 409
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=90.29 E-value=0.36 Score=30.85 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..+|..+||+.+|||+.||..||.
T Consensus 2 ~~~tI~evA~~~gvs~~TLRyYe~ 25 (249)
T 3qao_A 2 NAMQIKELAELTGVSVRTLHHYDK 25 (249)
T ss_dssp CCBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 358999999999999999999986
No 410
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=90.28 E-value=0.24 Score=25.82 Aligned_cols=34 Identities=3% Similarity=0.088 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhC----CCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQIN----QRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~g----is~~~i~~~e~ 55 (82)
...|..+....++|+.|||+.++ ++++||+...+
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~ 49 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLL 49 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHH
Confidence 34566666667899999999996 78999988754
No 411
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.22 E-value=0.05 Score=31.84 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+++++++-.++
T Consensus 22 ~~~ti~~IA~~agvs~~t~Y~~F~sK 47 (189)
T 3geu_A 22 DGTTLDDIAKSVNIKKASLYYHFDSK 47 (189)
T ss_dssp HHCCHHHHHHHTTCCHHHHTTTCSSH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHhCCH
Confidence 36899999999999999999986554
No 412
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=90.21 E-value=0.59 Score=25.81 Aligned_cols=32 Identities=6% Similarity=0.045 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHh-CCCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQI-NQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~-gis~~~i~~~e 54 (82)
...|..+. ..++++.+||+.+ |++++++++..
T Consensus 25 ~~IL~~L~-~~~~~~~eLa~~l~~is~~tvs~~L 57 (112)
T 1z7u_A 25 LSLMDELF-QGTKRNGELMRALDGITQRVLTDRL 57 (112)
T ss_dssp HHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhccCCHHHHHHHH
Confidence 34555555 4689999999999 99999999864
No 413
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=89.98 E-value=0.39 Score=25.95 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
.|..+ ....++..+||+.+|+|+++|++..
T Consensus 28 Il~~L-~~~~~~~~ela~~l~is~~tvs~~L 57 (102)
T 3pqk_A 28 LVCTL-VEGEFSVGELEQQIGIGQPTLSQQL 57 (102)
T ss_dssp HHHHH-HTCCBCHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHH-HhCCCCHHHHHHHHCcCHHHHHHHH
Confidence 34444 3456999999999999999998864
No 414
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=89.97 E-value=0.53 Score=31.11 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=25.6
Q ss_pred HHHHHHHHhC--CCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGK--KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~--g~s~~elA~~~gis~~~i~~~e 54 (82)
..|+.+++.. -+|..+||+.+|+|+++|.+..
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i 40 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISRTAVKKVI 40 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHH
Confidence 4566666543 5899999999999999998874
No 415
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=89.97 E-value=0.16 Score=29.66 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=22.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 34 MSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.|..++|+.+|||+.+|+++..++.
T Consensus 29 ~t~~~IA~~aGvs~~tly~~F~sK~ 53 (190)
T 3jsj_A 29 IGVEALCKAAGVSKRSMYQLFESKD 53 (190)
T ss_dssp CCHHHHHHHHTCCHHHHHHHCSCHH
T ss_pred ccHHHHHHHhCCCHHHHHHHcCCHH
Confidence 7999999999999999999976543
No 416
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=89.93 E-value=0.24 Score=29.54 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCC
Q 038591 34 MSQPDLANQINQRPQVVSEYENGKAV 59 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g~~~ 59 (82)
.|..++|+.+|||+.+|+++..++..
T Consensus 32 ~s~~~IA~~agvs~~tiY~~F~sK~~ 57 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITYYFGSKED 57 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHSSHHH
T ss_pred ccHHHHHHHhCCCHHHHHHhcCCHHH
Confidence 89999999999999999999876543
No 417
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=89.85 E-value=0.084 Score=31.49 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+++-.++
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sK 55 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHFNNK 55 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHCSSH
T ss_pred ccCcHHHHHHHHCCChHHHHHHhCCH
Confidence 46899999999999999999987654
No 418
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=89.84 E-value=0.11 Score=30.95 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+++..++
T Consensus 30 ~~~s~~~IA~~agvs~~t~Y~~F~sK 55 (212)
T 2ras_A 30 AGLTLSELAARAGISQANLSRYFETR 55 (212)
T ss_dssp SCCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCH
Confidence 46899999999999999999986543
No 419
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=89.79 E-value=0.25 Score=27.94 Aligned_cols=25 Identities=4% Similarity=-0.015 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++..++|+.+|+|+.++++.....
T Consensus 27 ~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 27 PLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5899999999999999999997643
No 420
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=89.75 E-value=0.74 Score=28.20 Aligned_cols=35 Identities=9% Similarity=0.160 Sum_probs=29.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcccc
Q 038591 35 SQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~~ 80 (82)
|....|+.+|+|+++||+ .+..|.+.||+++-+|.
T Consensus 17 s~t~AA~~L~isq~avS~-----------~i~~LE~~lg~~Lf~R~ 51 (291)
T 3szp_A 17 SYTSTSKKTMIPVATITR-----------RIQALEDSLNLRLLNRH 51 (291)
T ss_dssp SHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTCCCEEEE
T ss_pred CHHHHHHHhCCCHHHHHH-----------HHHHHHHHhCCceEeec
Confidence 566699999999999998 46788888998887765
No 421
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=89.73 E-value=0.062 Score=32.55 Aligned_cols=25 Identities=8% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
..+|+.++|..+|+|+.+|++..+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~ 187 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQE 187 (213)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4689999999999999999998764
No 422
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=89.72 E-value=0.11 Score=31.65 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+.+++++..++
T Consensus 35 ~~~s~~~IA~~agvs~~t~Y~~F~~K 60 (216)
T 2oi8_A 35 SALSLNAIAKRMGMSGPALYRYFDGR 60 (216)
T ss_dssp TSCCHHHHHHHTTCCHHHHHTTCSSH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 46899999999999999999986654
No 423
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=89.69 E-value=0.48 Score=25.99 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCCHHHHHHHh-CCCHHHHHHHH
Q 038591 24 QIQRARLGKKMSQPDLANQI-NQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~-gis~~~i~~~e 54 (82)
.|..+. .-.+++.+||+.+ |++++++++..
T Consensus 19 IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L 49 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRLMPNITQKMLTQQL 49 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHH
Confidence 445554 5679999999999 99999999864
No 424
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=89.66 E-value=0.19 Score=30.62 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+.+++++-.++
T Consensus 21 ~~~s~~~IA~~aGvs~~tlY~hf~~K 46 (209)
T 3bqy_A 21 DTLTMRRLAQAMDVQAGALYRYFAAK 46 (209)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSH
T ss_pred ccCCHHHHHHHhCCCcchHHhhcCCH
Confidence 36899999999999999999987654
No 425
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=89.65 E-value=0.32 Score=30.17 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.++|..++|+.+|||+.+|+.+..+
T Consensus 67 ~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 67 EATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred ccccHHHHHHHhCCChHHHHHHcCC
Confidence 3689999999999999999998654
No 426
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=89.61 E-value=0.087 Score=32.05 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+.+++++..++
T Consensus 49 ~~~t~~~IA~~Agvs~~t~Y~~F~sK 74 (230)
T 2iai_A 49 DGTSMEHLSKAAGISKSSIYHHVTGK 74 (230)
T ss_dssp TTCCHHHHHHHHTSCHHHHTTTCSSH
T ss_pred cccCHHHHHHHHCCChhHHHHhCCCH
Confidence 46899999999999999999987654
No 427
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=89.59 E-value=0.27 Score=27.48 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=23.6
Q ss_pred HHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 25 IQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 25 lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
|..+. ...++..+||+.+|+|++++++..
T Consensus 24 l~~L~-~~~~~~~eLa~~l~is~~tvs~hL 52 (118)
T 3f6o_A 24 LGRLS-RGPATVSELAKPFDMALPSFMKHI 52 (118)
T ss_dssp HHHHH-TCCEEHHHHHTTCCSCHHHHHHHH
T ss_pred HHHHH-hCCCCHHHHHHHhCcCHHHHHHHH
Confidence 34444 567899999999999999999874
No 428
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=89.58 E-value=0.32 Score=30.56 Aligned_cols=31 Identities=13% Similarity=0.105 Sum_probs=24.6
Q ss_pred HHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 25 IQRARLG-KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 25 lk~~r~~-~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
|..+... .++|..|+|+.+|++++|++++.+
T Consensus 12 L~~l~~~~~~~s~~ela~~~gl~~stv~r~l~ 43 (241)
T 2xrn_A 12 MRALGSHPHGLSLAAIAQLVGLPRSTVQRIIN 43 (241)
T ss_dssp HHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4444433 369999999999999999999854
No 429
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=89.57 E-value=0.17 Score=31.99 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++.+..++.
T Consensus 61 ~~S~~~IA~~AGVs~~tlY~hF~sKe 86 (273)
T 3c07_A 61 RTTMRAIAQEAGVSVGNAYYYFAGKE 86 (273)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred ccCHHHHHHHHCCCHHHHHHHcCCHH
Confidence 57999999999999999999976543
No 430
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=89.57 E-value=0.17 Score=29.25 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++|+.+||+.+++++++++++.+
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~v~ 73 (147)
T 4b8x_A 51 ELPMSKIGERLMVHPTSVTNTVD 73 (147)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHH
Confidence 58999999999999999998753
No 431
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=89.50 E-value=0.079 Score=30.78 Aligned_cols=25 Identities=0% Similarity=-0.001 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.++|..++|+.+|||+.+++++-.+
T Consensus 25 ~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 25 HATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp TTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred cccCHHHHHHHHCCCchhHHHHccc
Confidence 3689999999999999999998763
No 432
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=89.42 E-value=0.79 Score=28.30 Aligned_cols=35 Identities=14% Similarity=0.257 Sum_probs=27.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcccc
Q 038591 35 SQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~~ 80 (82)
|....|+.+|+|+++||+ .+.+|.+.||+++-+|.
T Consensus 17 s~s~AA~~L~isq~avS~-----------~i~~LE~~lg~~Lf~R~ 51 (294)
T 1ixc_A 17 NMAAAAKRLHVSQPPITR-----------QMQALEADLGVVLLERS 51 (294)
T ss_dssp SHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTSCCBC--
T ss_pred CHHHHHHHhCCCcchHHH-----------HHHHHHHHHCCEEEEeC
Confidence 667799999999999998 45677788888876664
No 433
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=89.39 E-value=0.16 Score=30.23 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+++..++
T Consensus 28 ~~~s~~~IA~~aGvsk~tlY~~F~sK 53 (203)
T 3cdl_A 28 EITSMDRIAARAEVSKRTVYNHFPSK 53 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHTTSSSH
T ss_pred hhcCHHHHHHHhCCCHHHHHHHCCCH
Confidence 46799999999999999999986554
No 434
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=89.39 E-value=0.2 Score=31.76 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.-+|..++|+.+|||..||..||.-
T Consensus 4 ~~~~i~e~a~~~gvs~~tlr~y~~~ 28 (278)
T 1r8e_A 4 SYYSIGEVSKLANVSIKALRYYDKI 28 (278)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred CcEeHHHHHHHHCcCHHHHHHHHHC
Confidence 3478899999999999999999863
No 435
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=89.37 E-value=0.12 Score=31.16 Aligned_cols=25 Identities=8% Similarity=-0.081 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+|+.+..++
T Consensus 48 ~~t~~~IA~~aGvs~~tlY~~F~sK 72 (217)
T 3hta_A 48 GLSHRTVAAEADVPLGSTTYHFATL 72 (217)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred cCCHHHHHHHcCCCcchhhhcCCCH
Confidence 5799999999999999999987654
No 436
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=89.36 E-value=0.74 Score=26.78 Aligned_cols=31 Identities=3% Similarity=-0.015 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 23 RQIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 23 ~~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
..|..+. .-.+++.+|++.+|++++++++..
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L 58 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSLGLAKNILAARL 58 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHH
Confidence 3455554 456999999999999999998864
No 437
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=89.27 E-value=0.8 Score=28.62 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=29.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcccc
Q 038591 35 SQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~~ 80 (82)
|....|+.+|+|+++||+ .+..|.+.||+++-+|.
T Consensus 26 s~s~AA~~L~isq~avS~-----------~I~~LE~~lg~~Lf~R~ 60 (310)
T 2esn_A 26 NVGTAASELAISASAFSH-----------ALGRLRQGLDDELFLRQ 60 (310)
T ss_dssp SHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTSCCEEEE
T ss_pred CHHHHHHHhCCChHHHHH-----------HHHHHHHhhCCcceeec
Confidence 566799999999999998 46788888888887664
No 438
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=89.27 E-value=0.24 Score=25.78 Aligned_cols=26 Identities=0% Similarity=-0.003 Sum_probs=22.7
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
..-+|.+|.|+.+||+.+++.++-+.
T Consensus 14 K~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SSEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred cceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 35679999999999999999999754
No 439
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=89.21 E-value=0.84 Score=28.34 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcccc
Q 038591 34 MSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~~ 80 (82)
-|....|+.+|+|+++||+ .+..|.+.||+++-+|.
T Consensus 18 gs~t~AA~~L~isq~avS~-----------~i~~LE~~lg~~Lf~R~ 53 (306)
T 3hhg_A 18 GSFSRAAEQLAMANSAVSR-----------IVKRLEEKLGVNLLNRT 53 (306)
T ss_dssp SSHHHHHHHHTCCHHHHHH-----------HHHHHHHHHTSCCEETT
T ss_pred CCHHHHHHHhCCCHHHHHH-----------HHHHHHHHhCCeeEeec
Confidence 3777899999999999998 45778888888887764
No 440
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=89.16 E-value=0.19 Score=30.58 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=23.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAV 59 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~ 59 (82)
++|..++|+.+|||+.+++++..++..
T Consensus 23 ~~s~~~IA~~~Gvs~~slY~hF~~K~~ 49 (207)
T 2xpw_A 23 GLTTRKLAQKLGIEQPTLYWHVKNKRA 49 (207)
T ss_dssp HCCHHHHHHHHTCCHHHHHHHCCCHHH
T ss_pred cCCHHHHHHHhCCCcchHHHhcCCHHH
Confidence 689999999999999999999776543
No 441
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=89.15 E-value=0.28 Score=30.54 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=23.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+|+++..++.
T Consensus 26 ~~S~r~IA~~aGvs~~tlY~hF~~K~ 51 (234)
T 2opt_A 26 ALSMRRLAQELKTGHASLYAHVGNRD 51 (234)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHHCSHH
T ss_pred ccCHHHHHHHHCCChhHHHHHcCCHH
Confidence 58999999999999999999987653
No 442
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=89.09 E-value=0.4 Score=29.66 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.++++.+||+.+|++++++++..+
T Consensus 19 ~~~~~~~lA~~l~vs~~tvs~~l~ 42 (214)
T 3hrs_A 19 NKITNKEIAQLMQVSPPAVTEMMK 42 (214)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHH
Confidence 468999999999999999998753
No 443
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=88.88 E-value=0.23 Score=30.31 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.+.|..++|+.+|||+.+|+.+..++.
T Consensus 26 ~~ts~~~IA~~AGvs~~tlY~hF~sKe 52 (235)
T 2fbq_A 26 AETSLRLITSKAGVNLAAVNYHFGSKK 52 (235)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHTCSHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 367999999999999999999876543
No 444
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=88.83 E-value=1.1 Score=28.61 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=32.4
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHcC----CCCCCHHHHHHHHHHhCC
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYENG----KAVPNQTVLAKMEKAIGV 74 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~g----~~~p~~~~~~~la~~lgv 74 (82)
..|+|.+|+|+.+|+|..||...... -...+...+..+|..+|+
T Consensus 210 ~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~~~~~~a~~~gl 257 (265)
T 3qp6_A 210 SRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHLAM 257 (265)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHTHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCC
Confidence 58999999999999999999887653 223455555555555554
No 445
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=88.69 E-value=0.71 Score=31.95 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.++|..|+|+.+|||+.+|.+++..
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~R 418 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENK 418 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5799999999999999999999863
No 446
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=88.64 E-value=0.13 Score=30.65 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+.+..++
T Consensus 31 ~~~s~~~IA~~aGvsk~tlY~hF~sK 56 (200)
T 2hyj_A 31 DGITIGRLAEELEMSKSGVHKHFGTK 56 (200)
T ss_dssp GGCCHHHHHHHHTCCHHHHHTTCSSH
T ss_pred ccCCHHHHHHHhCCChHHHHHHcCCH
Confidence 46899999999999999999876543
No 447
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=88.62 E-value=0.13 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=25.6
Q ss_pred HHHHHHH-HHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRA-RLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~-r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+ ....++++.+||+.+|++++++++..
T Consensus 50 ~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l 83 (160)
T 3boq_A 50 FDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLV 83 (160)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHH
Confidence 3455556 45568999999999999998888774
No 448
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=88.39 E-value=0.32 Score=30.28 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=23.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+|+++..++.
T Consensus 49 ~~s~~~IA~~aGvs~~tlY~hF~~K~ 74 (241)
T 2hxi_A 49 TFSVRKLAASLGTDSSSLYRHFRNKT 74 (241)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHTSSHH
T ss_pred cCCHHHHHHHhCcCHHHHHHHcCCHH
Confidence 58999999999999999999977653
No 449
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=88.35 E-value=0.24 Score=28.97 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 22 PRQIQRARLG--KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~--~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
...|..+... .++|+.+||+.+++++++|+++.+
T Consensus 49 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~ 84 (168)
T 3u2r_A 49 YNTLRLLRSVHPEGMATLQIADRLISRAPDITRLID 84 (168)
T ss_dssp HHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHH
Confidence 3455556553 589999999999999999988743
No 450
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=88.24 E-value=0.52 Score=28.26 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=22.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 34 MSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 34 ~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
-|+.++|+.+|++.++|+.+.+|+.
T Consensus 136 ~s~~eAa~~~Gvs~~tIs~~~~gk~ 160 (174)
T 1u3e_M 136 PSTKCACEELGLTRGKVTDVLKGHR 160 (174)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHTSS
T ss_pred CCHHHHHHHHCcCHhHhHHHHcCCC
Confidence 4899999999999999999999864
No 451
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=88.18 E-value=0.21 Score=32.00 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
.++|..++|+.+|||+.+++++..++.
T Consensus 139 ~~~T~~~IA~~AGvs~gtlY~yF~sKe 165 (311)
T 4ich_A 139 HNVRIHDIASELGTSNATIHYHFPSKK 165 (311)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHH
Confidence 357999999999999999999976643
No 452
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=88.18 E-value=1 Score=26.21 Aligned_cols=35 Identities=3% Similarity=-0.038 Sum_probs=28.5
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcccc
Q 038591 35 SQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~~ 80 (82)
|....|+.+|+|+++|++ .+..|.+.||+++-++.
T Consensus 40 S~s~AA~~L~iSqsavS~-----------~I~~LE~~lG~~Lf~R~ 74 (135)
T 2ijl_A 40 SISAAGRAMDMSYRRAWL-----------LVDALNHMFRQPVICSQ 74 (135)
T ss_dssp CHHHHHHHTTCCHHHHHH-----------HHHHHHHHBSSCSEEEC
T ss_pred CHHHHHHHHCcCHHHHHH-----------HHHHHHHHHCCeeEEec
Confidence 667799999999999998 45677788888876664
No 453
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=88.14 E-value=0.12 Score=30.28 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.2
Q ss_pred hCCCCHHHHHH----Hh--CCCHHHHHHHHcC
Q 038591 31 GKKMSQPDLAN----QI--NQRPQVVSEYENG 56 (82)
Q Consensus 31 ~~g~s~~elA~----~~--gis~~~i~~~e~g 56 (82)
.-+++|.+||. .. +++++||++|.+.
T Consensus 28 ~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 28 QNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 36799999999 88 8999999998653
No 454
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=88.11 E-value=0.38 Score=29.88 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Q 038591 33 KMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~ 55 (82)
++|..++|+.+|+|+++|++..+
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~ 49 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIII 49 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999998743
No 455
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=87.91 E-value=0.65 Score=25.55 Aligned_cols=34 Identities=9% Similarity=-0.112 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhC----CCHHHHHHHHc
Q 038591 22 PRQIQRARLGKKMSQPDLANQIN----QRPQVVSEYEN 55 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~g----is~~~i~~~e~ 55 (82)
...|..+...-++|+.||++.++ ++++||+.+.+
T Consensus 38 ~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~ 75 (99)
T 2k4b_A 38 LIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLG 75 (99)
T ss_dssp SHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHH
Confidence 46677777777999999999997 57888887753
No 456
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=87.90 E-value=0.32 Score=29.54 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++..++
T Consensus 29 ~~s~~~IA~~aGvs~~tlY~hF~~K 53 (213)
T 2g7g_A 29 DFRMPDLARHLNVQVSSIYHHAKGR 53 (213)
T ss_dssp SCCHHHHHHHTTSCHHHHHTTSCHH
T ss_pred CCCHHHHHHHhCCCHhHHHHHcCCH
Confidence 8999999999999999999986543
No 457
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=87.85 E-value=0.53 Score=26.10 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhC----CCHHHHHHHH
Q 038591 22 PRQIQRARLGKKMSQPDLANQIN----QRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~g~s~~elA~~~g----is~~~i~~~e 54 (82)
...|..+...-++|+.+||+.++ ++++||+.+.
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l 49 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLI 49 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHH
Confidence 45677777777899999999997 5899988874
No 458
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=87.74 E-value=1.2 Score=27.89 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=29.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcccc
Q 038591 35 SQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~~ 80 (82)
|....|+++|+|+++||+ .+..|.+.||+++-+|.
T Consensus 18 s~t~AA~~L~isq~avS~-----------~i~~LE~~lg~~Lf~R~ 52 (305)
T 3fxq_A 18 SLRAAAQLLHLSQPALSA-----------AIQQLEDELKAPLLVRT 52 (305)
T ss_dssp CHHHHHHHTTCCHHHHHH-----------HHHHHHHHHTSCSEEEC
T ss_pred CHHHHHHHhCCCHHHHHH-----------HHHHHHHHhCCeeEEec
Confidence 666799999999999998 46778888888887664
No 459
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=87.74 E-value=0.055 Score=33.39 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+|+++..++.
T Consensus 66 ~~t~~~IA~~aGvs~~t~Y~~F~sKe 91 (245)
T 3aqt_A 66 NVGIAEITEGANIGTGTFYNYFPDRE 91 (245)
T ss_dssp GCCHHHHHHHTTSCGGGGGGTCSSHH
T ss_pred cCcHHHHHHHhCCChHHHHHHcCCHH
Confidence 58999999999999999999876643
No 460
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=87.67 E-value=0.57 Score=30.76 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 24 QIQRARLGKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~gis~~~i~~~e 54 (82)
.|..+.....+|..+||+.+|+|+.||.+-.
T Consensus 10 Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l 40 (321)
T 1bia_A 10 LIALLANGEFHSGEQLGETLGMSRAAINKHI 40 (321)
T ss_dssp HHHHHTTSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 3454544456999999999999999998854
No 461
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=87.65 E-value=0.1 Score=31.78 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 29 RLGKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 29 r~~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
+--.|+|.+|+|+.+|+|..+|.++..
T Consensus 210 ~~~~g~s~~EIA~~lgis~~tV~~~~~ 236 (243)
T 1l0o_C 210 RYYKDQTQSEVASRLGISQVQMSRLEK 236 (243)
T ss_dssp ---------------------------
T ss_pred HHhcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 345699999999999999999998765
No 462
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=87.64 E-value=0.28 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=19.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHc
Q 038591 35 SQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e~ 55 (82)
|..+||+.+|+|+++|++...
T Consensus 37 s~~eLa~~~~vSr~tvr~al~ 57 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALA 57 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 899999999999999998754
No 463
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=87.58 E-value=0.2 Score=30.55 Aligned_cols=26 Identities=19% Similarity=0.274 Sum_probs=22.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 26 ~~s~~~IA~~aGvs~~tlY~~F~sK~ 51 (220)
T 1z0x_A 26 QLSMRKVAKQLGVQAPAIYWYFKNKQ 51 (220)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSSHH
T ss_pred cCCHHHHHHHcCCCHHHHHHhcCCHH
Confidence 57999999999999999999876543
No 464
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=87.48 E-value=0.59 Score=25.75 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=17.8
Q ss_pred CHHHHHHHhCCCHHHHHHH
Q 038591 35 SQPDLANQINQRPQVVSEY 53 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~ 53 (82)
|..+||+.+|+|+++|.+.
T Consensus 45 s~~eLa~~lgVSr~tVr~a 63 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNA 63 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHH
Confidence 9999999999999999876
No 465
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=87.31 E-value=0.076 Score=31.13 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+|+++..++
T Consensus 26 ~~~s~~~IA~~aGvs~~tlY~~F~sK 51 (178)
T 4hku_A 26 EKTTLYDIASNLNVTHAALYKHYRNK 51 (178)
T ss_dssp GGCCHHHHHHHTTSCGGGGGGTCSSH
T ss_pred ccccHHHHHHHhCcCHhHHHHHCCCH
Confidence 36799999999999999999986554
No 466
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=87.30 E-value=0.84 Score=26.37 Aligned_cols=25 Identities=8% Similarity=-0.065 Sum_probs=22.9
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
-.|.+..+||++.|+|..+|.++..
T Consensus 90 f~G~n~~eLArkYgLSer~I~~Ii~ 114 (129)
T 1rr7_A 90 FNGRNVSELTTRYGVTFNTVYKAIR 114 (129)
T ss_dssp CCSSCHHHHHHHHTCCHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3689999999999999999999975
No 467
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=87.27 E-value=0.21 Score=29.80 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g 56 (82)
++|..++|+.+|||+.+++.+..+
T Consensus 48 ~~tv~~IA~~agvs~~t~Y~~F~s 71 (215)
T 2qko_A 48 GLTFRAVDVEANVPKGTASNYFPS 71 (215)
T ss_dssp TCCHHHHHHHSSSTTTCHHHHCSC
T ss_pred hccHHHHHHHcCCCcchHHHhCCC
Confidence 589999999999999999998654
No 468
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=87.25 E-value=1.6 Score=24.96 Aligned_cols=34 Identities=6% Similarity=0.120 Sum_probs=26.4
Q ss_pred HHHHHHH-HhCCCCHHHHHHHh--------C--CCHHHHHHHHcC
Q 038591 23 RQIQRAR-LGKKMSQPDLANQI--------N--QRPQVVSEYENG 56 (82)
Q Consensus 23 ~~lk~~r-~~~g~s~~elA~~~--------g--is~~~i~~~e~g 56 (82)
..|..+. +...+|..+++..+ | +|.+||.+|...
T Consensus 97 ~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 97 EKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred HHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 3454444 44679999999988 7 899999999875
No 469
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=87.24 E-value=0.08 Score=31.27 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.|++++-.++.
T Consensus 33 ~~tv~~Ia~~agvs~~t~Y~~F~sK~ 58 (195)
T 2iu5_A 33 QISVSDIMQTAKIRRQTFYNYFQNQE 58 (195)
T ss_dssp GCCHHHHHHHHTSCGGGGGGTCSSHH
T ss_pred eeCHHHHHHHhCCCHHHHHHHcCCHH
Confidence 47999999999999999999876543
No 470
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=87.00 E-value=0.43 Score=23.45 Aligned_cols=25 Identities=4% Similarity=0.110 Sum_probs=21.0
Q ss_pred CCHHHHHHHh--CCCHHHHHHHHcCCC
Q 038591 34 MSQPDLANQI--NQRPQVVSEYENGKA 58 (82)
Q Consensus 34 ~s~~elA~~~--gis~~~i~~~e~g~~ 58 (82)
+|..|+|+.+ .+|.+|+.+|-+...
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~ 29 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESR 29 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTC
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCC
Confidence 5788999999 689999999987543
No 471
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=86.94 E-value=0.31 Score=29.54 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
+.|..++|+.+|||+.+++.+..++
T Consensus 27 ~~tv~~Ia~~agvs~~t~y~~F~~K 51 (213)
T 3ni7_A 27 AVRLYDIAARLAVSLDEIRLYFREK 51 (213)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred ccCHHHHHHHhCCCHHHHHHHCCCH
Confidence 4789999999999999999997654
No 472
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=86.78 E-value=0.048 Score=32.16 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..++|+.+|||+.+++++..++
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~sK 60 (211)
T 3him_A 35 GATTTREIAASLDMSPGAVYPHYKTK 60 (211)
T ss_dssp TTCCHHHHHHHTTCCTTSSTTTCSSH
T ss_pred CcCCHHHHHHHhCCCcChhhhcCCCH
Confidence 36899999999999999999886654
No 473
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=86.75 E-value=0.59 Score=26.75 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.5
Q ss_pred CHHHHHHHhCCCHHHHHHH
Q 038591 35 SQPDLANQINQRPQVVSEY 53 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~ 53 (82)
|..+||+.+|||+.||.+-
T Consensus 40 ser~La~~~gVSr~tVReA 58 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKA 58 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHH
Confidence 8899999999999998876
No 474
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=86.70 E-value=0.29 Score=31.13 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.++|..+||+.+||++.+|+.+..++
T Consensus 46 ~~~Smr~IA~~aGVs~~tlY~hF~~K 71 (267)
T 2y2z_A 46 EAASMRRVAAELGAGTMSLYYYVPTK 71 (267)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCCSH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 46899999999999999999987654
No 475
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=86.64 E-value=0.065 Score=31.85 Aligned_cols=25 Identities=12% Similarity=0.108 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
+.|..++|+.+|||+.+++++-.++
T Consensus 33 ~~t~~~IA~~agvs~~tlY~~F~sK 57 (217)
T 3nrg_A 33 SVSINRITERAGIAKGSFYQYFADK 57 (217)
T ss_dssp GCCHHHHHHHHTCCTTGGGGTCSSH
T ss_pred cCCHHHHHHHhCCcHHHHHHHcCCH
Confidence 4899999999999999999986554
No 476
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=86.62 E-value=0.59 Score=29.66 Aligned_cols=25 Identities=12% Similarity=0.013 Sum_probs=22.1
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..++|..|||+.+|++++|++++.+
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3579999999999999999999854
No 477
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=86.56 E-value=0.08 Score=31.42 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
+.|..++|+.+|||+.+++++-.++
T Consensus 34 ~~s~~~Ia~~agvs~~t~Y~yF~sK 58 (203)
T 3ccy_A 34 ETSIGDIARACECSKSRLYHYFDSK 58 (203)
T ss_dssp TSCHHHHHHHTTCCGGGGTTTCSCH
T ss_pred cCCHHHHHHHhCCCcCeeeeeeCCH
Confidence 5799999999999999999986554
No 478
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=86.53 E-value=0.7 Score=25.68 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=18.1
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 038591 35 SQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e 54 (82)
|..+||+.+|||+.+|.+..
T Consensus 35 s~~~La~~~~vSr~tvr~al 54 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAY 54 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 89999999999999988763
No 479
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=86.48 E-value=0.79 Score=26.16 Aligned_cols=33 Identities=3% Similarity=-0.070 Sum_probs=26.6
Q ss_pred HHHHHHHHH-hCCCCHHHHHHHhC----CCHHHHHHHH
Q 038591 22 PRQIQRARL-GKKMSQPDLANQIN----QRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~-~~g~s~~elA~~~g----is~~~i~~~e 54 (82)
...|..+.. .-++|+.+||+.++ ++++||+.+.
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l 49 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVL 49 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHH
Confidence 345666666 46899999999998 8999998874
No 480
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=86.40 E-value=0.61 Score=29.51 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.++|..|||+.+|++++|++++.+
T Consensus 28 ~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 28 PNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp SSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 469999999999999999999864
No 481
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=86.21 E-value=0.23 Score=31.03 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..+||+.+|||+.+|+.+..++
T Consensus 39 ~~S~~~IA~~aGvs~~tlY~hF~sK 63 (243)
T 2g7l_A 39 KVTMRRLAQELDTGPASLYVYVANT 63 (243)
T ss_dssp SCCHHHHHHHTTSCHHHHTTTCCSH
T ss_pred hcCHHHHHHHHCCChhHHHHHcCCH
Confidence 6899999999999999999986554
No 482
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=86.21 E-value=0.38 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=21.6
Q ss_pred hCCCCHHHHHHHhCCCHHHHHHHH
Q 038591 31 GKKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 31 ~~g~s~~elA~~~gis~~~i~~~e 54 (82)
...++..+||+.+|+++++|++..
T Consensus 69 ~~~~t~~eLa~~lgls~stvs~hL 92 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQHL 92 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHHH
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHH
Confidence 567999999999999999999874
No 483
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=86.08 E-value=0.13 Score=30.67 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=3.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAV 59 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~ 59 (82)
++|..++|+.+|||+.+++++..++..
T Consensus 50 ~~ti~~IA~~agvs~~t~Y~~F~sK~~ 76 (212)
T 2np3_A 50 ATSLRRIAETAGVDQSLVHHFYGTKEN 76 (212)
T ss_dssp ---------------------CCC-CH
T ss_pred cccHHHHHHHcCCCHHHHHHHhCCHHH
Confidence 579999999999999999999876543
No 484
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=86.07 E-value=0.098 Score=30.37 Aligned_cols=26 Identities=8% Similarity=-0.147 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
.+.|..++|+.+|||+.+++.+-.++
T Consensus 26 ~~~s~~~IA~~agvs~~tly~~F~sK 51 (180)
T 2fd5_A 26 VEPSVGEVMGAAGLTVGGFYAHFQSK 51 (180)
T ss_dssp TSCCHHHHHHHTTCCGGGGGGTCSCH
T ss_pred ccCCHHHHHHHhCCCccHHHHHCCCH
Confidence 36899999999999999999876543
No 485
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=85.97 E-value=0.055 Score=31.60 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=17.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++-.++
T Consensus 32 ~~t~~~IA~~agvs~~t~Y~~F~sK 56 (199)
T 3on2_A 32 GLSLRQLAREAGVSHAAPSKHFRDR 56 (199)
T ss_dssp GCCHHHHHHHTC-----CCCSSSSH
T ss_pred hhhHHHHHHHhCCChHHHHHHhCCH
Confidence 5899999999999999999876553
No 486
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=85.96 E-value=0.22 Score=30.36 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+|+++..++
T Consensus 45 ~~s~~~IA~~aGvs~~tlY~~F~~K 69 (211)
T 3fiw_A 45 GVSTRRLAKRLGVEQPSLYWYFRTK 69 (211)
T ss_dssp GCCHHHHHHHHTSCTHHHHTTCSSH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCH
Confidence 5899999999999999999986543
No 487
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=85.96 E-value=0.64 Score=26.51 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.+.|+.+||+.+|++..+|.+..+
T Consensus 50 ~~ps~~~LA~~l~~s~~~V~~~l~ 73 (128)
T 2vn2_A 50 LFPTPAELAERMTVSAAECMEMVR 73 (128)
T ss_dssp SSCCHHHHHHTSSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 348999999999999999877643
No 488
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=85.84 E-value=1.1 Score=27.97 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=29.1
Q ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCcccc
Q 038591 35 SQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKAIGVKLRVKI 80 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~lgv~~~e~~ 80 (82)
|....|+.+|+|+++||+ .+..|.+.||+++-+|.
T Consensus 22 s~s~AA~~L~isq~avS~-----------~i~~LE~~lg~~Lf~R~ 56 (303)
T 3isp_A 22 SFDAAAERLHVTPSAVSQ-----------RIKSLEQQVGQVLVVRE 56 (303)
T ss_dssp CHHHHHTTTTCCHHHHHH-----------HHHHHHHHHTSCCEECS
T ss_pred CHHHHHHHhCCChHHHHH-----------HHHHHHHHhCCeeEEcC
Confidence 566699999999999998 45778888888887764
No 489
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=85.83 E-value=0.096 Score=31.35 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGK 57 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~ 57 (82)
++|..++|+.+|||+.+++++..++
T Consensus 32 ~~ti~~Ia~~Agvs~~t~Y~~F~sK 56 (220)
T 3lsj_A 32 SLSLREVTRAAGIVPAGFYRHFSDM 56 (220)
T ss_dssp GCCHHHHHHHHTSCGGGGTTTCSSH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCH
Confidence 5899999999999999999986553
No 490
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=85.83 E-value=0.78 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=18.0
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 038591 35 SQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 35 s~~elA~~~gis~~~i~~~e 54 (82)
|..+||+.+|||+.+|.+..
T Consensus 39 s~~~La~~~~vSr~tvr~Al 58 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAY 58 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 79999999999999988763
No 491
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=85.80 E-value=0.15 Score=30.99 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcC
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENG 56 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g 56 (82)
.|+|..++|+.+|+|.+|+++|.+.
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~ 181 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 5899999999999999999999764
No 492
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=85.66 E-value=0.19 Score=30.58 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCC
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKA 58 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~ 58 (82)
++|..++|+.+|||+.+++++..++.
T Consensus 24 ~~s~~~IA~~agvs~~tlY~~f~~K~ 49 (207)
T 2vpr_A 24 GLTTRKLAQKIGVEQPTLYWHVKNKR 49 (207)
T ss_dssp HCCHHHHHHHHTCCHHHHTTTCCSHH
T ss_pred cCCHHHHHHHhCCChhHHHHHcCCHH
Confidence 58999999999999999999876543
No 493
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=85.65 E-value=0.19 Score=30.63 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=28.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHH
Q 038591 33 KMSQPDLANQINQRPQVVSEYENGKAVPNQTVLAKMEKA 71 (82)
Q Consensus 33 g~s~~elA~~~gis~~~i~~~e~g~~~p~~~~~~~la~~ 71 (82)
++|..++|+.+|||+.+++++..++...-...+..+...
T Consensus 23 ~~s~~~IA~~aGvs~~tlY~~F~~K~~Ll~a~~~~~~~~ 61 (202)
T 4ac0_A 23 GLTTRKLAQKLGVEQPTLYWHVKNKRALLDALAIEMLDR 61 (202)
T ss_dssp HCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCchhHHhhcCCHHHHHHHHHHHHHHH
Confidence 689999999999999999998766543333333444333
No 494
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=85.43 E-value=0.29 Score=29.02 Aligned_cols=33 Identities=6% Similarity=-0.110 Sum_probs=24.4
Q ss_pred HHHHHHHHHhC---CCCHHHHHHHhCCCHHHHHHHH
Q 038591 22 PRQIQRARLGK---KMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 22 ~~~lk~~r~~~---g~s~~elA~~~gis~~~i~~~e 54 (82)
...|..+.... ++|+.+||+.+|++++++++..
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l 107 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRI 107 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 34455555544 3999999999999999877653
No 495
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=85.27 E-value=0.76 Score=25.89 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYE 54 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e 54 (82)
..+|..++|+.+|++++++.++.
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il 47 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLV 47 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHH
T ss_pred CcCCHHHHHHHHCcCHHHHHHHH
Confidence 45899999999999999999985
No 496
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=85.27 E-value=0.84 Score=24.92 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCHHHHHHHh-CCCHHHHHHHH
Q 038591 24 QIQRARLGKKMSQPDLANQI-NQRPQVVSEYE 54 (82)
Q Consensus 24 ~lk~~r~~~g~s~~elA~~~-gis~~~i~~~e 54 (82)
.|..+. ..++++.+||+.+ |++++++++..
T Consensus 30 IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L 60 (107)
T 2fsw_A 30 IIFQIN-RRIIRYGELKRAIPGISEKMLIDEL 60 (107)
T ss_dssp HHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHH-hCCcCHHHHHHHcccCCHHHHHHHH
Confidence 445554 5569999999999 59999998864
No 497
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=85.26 E-value=2.8 Score=26.16 Aligned_cols=31 Identities=3% Similarity=0.065 Sum_probs=25.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHH
Q 038591 32 KKMSQPDLANQINQRPQVVSEYENGKAVPNQT 63 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~g~~~p~~~ 63 (82)
..+|..++|+.+|+|+.++++..+. ...++.
T Consensus 184 ~~~sl~~lA~~~~~S~~~l~r~fk~-~G~t~~ 214 (276)
T 3gbg_A 184 RNWRWADICGELRTNRMILKKELES-RGVKFR 214 (276)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHT-TTCCHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH-cCCCHH
Confidence 3689999999999999999999874 444443
No 498
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=85.15 E-value=1.2 Score=27.59 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.3
Q ss_pred CCCCH--HHHHHHhCCCHHHHHHHH
Q 038591 32 KKMSQ--PDLANQINQRPQVVSEYE 54 (82)
Q Consensus 32 ~g~s~--~elA~~~gis~~~i~~~e 54 (82)
.|+++ .+||+.+|++++++++..
T Consensus 21 ~~~~~~~~~La~~l~vs~~tvs~~l 45 (230)
T 1fx7_A 21 EGVTPLRARIAERLDQSGPTVSQTV 45 (230)
T ss_dssp HTSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHH
Confidence 47888 999999999999998874
No 499
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=84.87 E-value=0.59 Score=29.99 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=23.7
Q ss_pred HHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 23 RQIQRARLG-KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 23 ~~lk~~r~~-~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
..|..+-.. .++|..|+|+.+|++++|++++.+
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~ 67 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLA 67 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444443 469999999999999999999864
No 500
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=84.83 E-value=0.43 Score=30.32 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHc
Q 038591 32 KKMSQPDLANQINQRPQVVSEYEN 55 (82)
Q Consensus 32 ~g~s~~elA~~~gis~~~i~~~e~ 55 (82)
.++|..|+|+.+|++++|++++.+
T Consensus 20 ~~lsl~eia~~lgl~ksT~~RlL~ 43 (260)
T 3r4k_A 20 LEIGLSDLTRLSGMNKATVYRLMS 43 (260)
T ss_dssp SEEEHHHHHHHHCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 568999999999999999999864
Done!