BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038592
(478 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2
SV=1
Length = 693
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 113/426 (26%), Positives = 179/426 (42%), Gaps = 87/426 (20%)
Query: 42 VLDSP-VQLSDSLAQPQVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPT 100
++DSP V+LS S A+ +P RE +W+F +E G QL S F+RLI++
Sbjct: 284 IVDSPAVRLSHS---NHFAIFIIPHGRETEWLFGSEQGRKQLAGSVG-FNRLIIVA---- 335
Query: 101 TDDSPDLPITTKHDSFDQKSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVV 160
+ D K+++ + V+ L+ D +P LS +++ S +
Sbjct: 336 --------LHRDQQYTDMKAIQSELSAKVLELAPPGLPDNQ---QIPFLSAGEDIGSRTI 384
Query: 161 LEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSV 220
+ +F+GE +VEDV + RRL F N+VQ+E +L+P S
Sbjct: 385 QHRGKSEFSGEYVVEDVRGDGNSS------YRRLIFLSNQNVVQSEARLLP------IST 432
Query: 221 KIGGKVRF-------------RPHIGVLVHVYLV-----PMVASCALIGSYIGERIRFGF 262
IG K R +P I + YL M++ AL+ + G
Sbjct: 433 HIGQKKRKDKKKQQKPVKDLEQPTITRIDKSYLCCEHHKAMISGLALLPNP-------GL 485
Query: 263 RPKA----LCVGVGGGALVSFLRTQLDFEVVGV-EMDEVVLRVARQYFGLEDGEFLQVSV 317
P+ L +G+GGG+L F+ V V E+D VL VA +F E ++V +
Sbjct: 486 LPECQASVLVIGLGGGSLSLFIHDYFPGSRVEVVEIDPSVLDVASNWFNFCQDERMKVHL 545
Query: 318 GDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS 377
D + + LA D+ AC +DVIM D+DS D G S
Sbjct: 546 ADGLVHINSLA--------DNGEAC-----------------YDVIMFDVDSKDPSVGMS 580
Query: 378 APPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEE 437
PP FV K L IL+ G+F++N++ + ++ +VF +Y + E
Sbjct: 581 CPPPAFVEKMFLQNVHNILNANGVFILNLVCRDTDLRLKVLNVLHEVFPLIYAQKIDEEV 640
Query: 438 NFVLIA 443
N +L
Sbjct: 641 NEILFC 646
>sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2
SV=1
Length = 699
Score = 95.5 bits (236), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 99/399 (24%), Positives = 167/399 (41%), Gaps = 65/399 (16%)
Query: 59 ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
A+ +P+ RE +W+F E G QL S F RLI + L +++ D
Sbjct: 301 AIFIIPQGRETEWLFGMEEGRKQLAASAG-FRRLITVA----------LHRGQQYEGMDS 349
Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
E S + + +A + VP LS ++ +V + +G+ ++EDV+
Sbjct: 350 IQAELSARVMELAPA-----GMPAQLQVPFLSVGGDIGVRIVQHQACSPLSGDYVIEDVQ 404
Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPH------- 231
G KR FRR L F N+VQ+E +L+ + + + + + RP
Sbjct: 405 -----GDDKRYFRR-LIFLSNRNVVQSEARLLQDVSHRAQKKRKKDRKKHRPADTPEDLP 458
Query: 232 --------IGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ 283
L + M+A AL+ + + L VG+GGG+L F+
Sbjct: 459 AAQGQSIDKSYLCCEHHKAMIAGLALLKN---PELLLETPLALLVVGLGGGSLPLFIHDH 515
Query: 284 LDFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342
+ VE+D +L VA Q+FG + ++V + D ++F+ +LA
Sbjct: 516 FPKSCIHAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDFITRLA-------------- 561
Query: 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF 402
+ +DVIM D+DS D G S PP FV + L + IL+ G+F
Sbjct: 562 ----------EEEARPHYDVIMFDVDSKDPTLGMSCPPPAFVAQLFLQKVKSILTPEGVF 611
Query: 403 VMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVL 441
++N++ + D ++ + VF LY + E N +L
Sbjct: 612 ILNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEIL 650
>sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1
SV=1
Length = 699
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 165/398 (41%), Gaps = 63/398 (15%)
Query: 59 ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
A+ +P+ RE +W+F + G QL S F RLI + L +++S D
Sbjct: 301 AIFIIPQGRETEWLFGMDEGRKQLAASAG-FRRLITVA----------LHRGQQYESMDH 349
Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
E S + + +A + VP LS ++ V + +G+ ++EDV+
Sbjct: 350 IQAELSARVMELAPA-----GMPTQQQVPFLSVGGDIGVRTVQHQDCSPLSGDYVIEDVQ 404
Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPH------- 231
G KR FRR L F N+VQ+E +L+ + + + + + RP
Sbjct: 405 -----GDDKRYFRR-LIFLSNRNVVQSEARLLKDVSHKAQKKRKKDRKKQRPADAEDLPA 458
Query: 232 -------IGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL 284
L + M+A AL+ + + L VG+GGG+L F+
Sbjct: 459 APGQSIDKSYLCCEHHKAMIAGLALLRN---PELLLEIPLALLVVGLGGGSLPLFVHDHF 515
Query: 285 DFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343
+ VE+D +L VA Q+FG + ++V + D ++++ LA
Sbjct: 516 PKSCIDAVEIDPSMLEVATQWFGFSQSDRMKVHIADGLDYIASLA--------------- 560
Query: 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV 403
+DVIM D+DS D G S PP FV + L + IL+ G+F+
Sbjct: 561 --------GGGEARPCYDVIMFDVDSKDPTLGMSCPPPAFVEQSFLQKVKSILTPEGVFI 612
Query: 404 MNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVL 441
+N++ + D ++ + VF LY + E N +L
Sbjct: 613 LNLVCRDLGLKDSVLAGLKAVFPLLYVRRIEGEVNEIL 650
>sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1
SV=1
Length = 698
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 164/399 (41%), Gaps = 66/399 (16%)
Query: 59 ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
A+ +P+ RE +W+F E G QL S F RL+ + +
Sbjct: 301 AIFIIPQGRETEWLFGMEEGRKQLAASAG-FRRLVTVA------------LHRGQRYAGM 347
Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
+S++ + V+ L+ + VP LS ++ V + +G+ ++EDV+
Sbjct: 348 ESIQAELSARVMELAPAGLPPQQ---QVPFLSVGGDIGVRTVQHQDHSALSGDYVIEDVQ 404
Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVR---------FR 229
E R + RRL F N+VQ+E +L+ + + + + + F
Sbjct: 405 GED------RWYFRRLIFLSNRNVVQSEARLLKDTSHRAQKKRKKDRKKQRPADTSEDFP 458
Query: 230 PHIGVLV-HVYLV-----PMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ 283
P G + YL MVA AL+ + L VG+GGG+L F+
Sbjct: 459 PAPGQSIDKSYLCCEHHKAMVAGLALLRNPELLLETPL---TLLVVGLGGGSLPLFVHDH 515
Query: 284 L-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342
+ VE+D +L VA Q+FG + ++V + D ++++ LA G+ P
Sbjct: 516 FPKSRIDAVEIDPTMLEVATQWFGFSQSDRMKVHIADGLDYITSLA----GEAPP----- 566
Query: 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF 402
+DVIM D+DS D G S PP FV + L + IL G+F
Sbjct: 567 ----------------HYDVIMFDVDSKDPTLGMSCPPPAFVDQVFLQKVKSILCHDGVF 610
Query: 403 VMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVL 441
++N++ + D ++ + F LY + E N +L
Sbjct: 611 ILNLVCRDVRLKDSVLAGLKAAFPLLYVRRIEGEVNEIL 649
>sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2
SV=1
Length = 690
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 106/399 (26%), Positives = 172/399 (43%), Gaps = 68/399 (17%)
Query: 59 ALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSFDQ 118
A+ VP+ RE DW++ + G QL S +F RL+++ + + D
Sbjct: 295 AIFIVPQGRESDWLYGSAEGRAQLA-SSAKFRRLVIVA------------MHRDQEYEDM 341
Query: 119 KSLEDSVKPLVIALSRKFCFDKNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVE 178
++++ + P+V+ L+ VP LS ++ V+ + + GE VEDV
Sbjct: 342 QAVQSELSPVVMELAPP---GMPANQQVPFLSVGGDLGWREVIGRGLSALTGEYSVEDVR 398
Query: 179 IESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHI------ 232
E RRL F LVQ+E +L AA S S K K +P
Sbjct: 399 GEDG------YLYRRLIFMNNSQLVQSESRLQSAAAASSASKKKNKKKAKQPASTGAKDR 452
Query: 233 ----GVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALV-SFLRTQLDF- 286
G L + MVA A++G + I +P ++ + GG + F+R DF
Sbjct: 453 SVDRGFLCCTHHEVMVAGLAMLGM---DAINNKDQPVSVLLVGLGGGGLPQFVR---DFV 506
Query: 287 ---EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343
V VE+D VVL VA+ +FG + + L+V++GD ++ + L +S G
Sbjct: 507 PCARVEVVELDPVVLDVAQTWFGFQIDDRLKVTLGDGLDHITTL---------ESEG--- 554
Query: 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV 403
+ FDVIM D+DS D G S PP FV +L +LS G+F+
Sbjct: 555 -------------ERYFDVIMFDVDSKDTTLGMSCPPPAFVETSLLKKVYSLLSPRGLFM 601
Query: 404 MNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLI 442
+N++ + + ++ VF ++ + E N VL+
Sbjct: 602 LNLVCRDSALRKSVLDRVHSVFPCVFSRGIEGEVNEVLL 640
>sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura
pseudoobscura GN=GA15401 PE=3 SV=1
Length = 673
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 152/373 (40%), Gaps = 67/373 (17%)
Query: 57 QVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSF 116
+ A VP+ RE +W+F T SG +L S +F RL ++ T H
Sbjct: 297 KYAAFIVPQGREIEWLFGTPSGRKKLQASA-KFQRLAVV---------------TLHRDQ 340
Query: 117 DQKSLEDSVKPLVIALSRKFCFDKNG-IYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVE 175
+LE+ L + F +G I +P LS +V L +GE +E
Sbjct: 341 VYNTLEEVQAELGDTV---FSLAPHGHIKQIPYLSLGSDVGKRETLISGFSKISGEFRIE 397
Query: 176 DVEIESEGGCRKREFRRRLRFKRMPNLVQTE--VKLVPEAAISLDSVKIGGKVRFRPHIG 233
+VE GG + RRL F +VQ+E VK + G + + H+
Sbjct: 398 EVEA---GG----KTLRRLIFLSNQFVVQSEALVKTIKIKGKKERKKIDFGYLACQHHLY 450
Query: 234 VLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVE 292
+ V V L + + + + L +G+GGG L SFL L + VE
Sbjct: 451 MSVGVQLATTL-----------QNPKKDVQKDVLVIGLGGGGLCSFLHAALPQSRITAVE 499
Query: 293 MDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDN 352
+D ++L VA QYF L+ + V + D + F+E+ +
Sbjct: 500 IDPIMLEVAEQYFELKQDKRFHVVIDDGLAFVERCRNE---------------------- 537
Query: 353 SDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS 412
D FD ++ D+DS D G S PP F+ DVLL + I+ G+F++N++ + +
Sbjct: 538 ----DIHFDAVLFDVDSKDLSLGMSCPPQGFLAHDVLLHIKEIIGPKGLFMLNLVCRDET 593
Query: 413 FYDMLIQEFRDVF 425
I + VF
Sbjct: 594 LKTEAIANLQKVF 606
>sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster
GN=CG2614 PE=2 SV=1
Length = 673
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 95/375 (25%), Positives = 152/375 (40%), Gaps = 71/375 (18%)
Query: 57 QVALMFVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKHDSF 116
+ A VP+ RE +WIFST +G +L S + F RL ++ L + +
Sbjct: 297 KYAAFIVPQGREVEWIFSTPAGRKKLQDSAN-FQRLAVVT----------LHRDQVYSTL 345
Query: 117 DQ--KSLEDSVKPLVIALSRKFCFDKNGIYN-VPLLSYEDNVVSSVVLEKCVGDFAGEML 173
D+ + L DS+K L A G+ + +P LS +V L +G+
Sbjct: 346 DEVKQELADSIKNLSPA----------GLTDQIPYLSLGSDVGKRETLICGFSKISGDFR 395
Query: 174 VEDVEIESEGGCRKREFRRRLRFKRMPNLVQTE--VKLVPEAAISLDSVKIGGKVRFRPH 231
+E+VE + RRL F +VQ+E VK V G + + H
Sbjct: 396 IEEVEANGKT-------LRRLIFLSNQFVVQSEALVKTVKIKGKKDRKKIDFGYLACQHH 448
Query: 232 IGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVG 290
+ + V V L V + + L VG+GGG L SFL L +
Sbjct: 449 LYMSVGVQLATTV-----------QHPKRDVEKDVLVVGLGGGGLCSFLHAALPQARITA 497
Query: 291 VEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFL 350
VE+D ++L VA QYF L+ + V + D ++F+E+ +
Sbjct: 498 VEIDPIMLEVAEQYFELKQDKRFHVVIDDGLDFVERCRNE-------------------- 537
Query: 351 DNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410
D FD ++ D+DS D G S PP F+ +L + I+ G+F++N++ +
Sbjct: 538 ------DIHFDAVLFDVDSKDLSLGMSCPPQSFLATKILQHIKEIIGPKGLFMLNLVCRD 591
Query: 411 RSFYDMLIQEFRDVF 425
S + VF
Sbjct: 592 ESLRTEALNNLHKVF 606
>sp|Q8D3Q3|SPEE_VIBVU Spermidine synthase OS=Vibrio vulnificus (strain CMCP6) GN=speE
PE=3 SV=1
Length = 299
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 45/194 (23%)
Query: 262 FRPKA---LCVGVGGGALVSFL-----RTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL 313
F PK L +G+GGG++ S L + +D VE+D VV ++A +YF +
Sbjct: 86 FNPKPERILIIGLGGGSVPSALAELYPESHMDI----VEIDPVVSQIAERYFYFQPSHNT 141
Query: 314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR 373
+V GDA ++++ LK K+D I++ DA
Sbjct: 142 RVHTGDARVYIKR---------------AGLK-----------GQKYDFILL-----DAF 170
Query: 374 NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDV 433
NG P + ++ L+ + +LS G+ V N ++ YD +R VF E Y +
Sbjct: 171 NGEYIPE-HLMTREFLMETKQLLSSSGVLVANTFSTSK-LYDHESATYRSVFGEFYNFKI 228
Query: 434 GNEENFVLIATGLS 447
E +I + L+
Sbjct: 229 PQESGNRVILSMLT 242
>sp|Q7MF74|SPEE_VIBVY Spermidine synthase OS=Vibrio vulnificus (strain YJ016) GN=speE
PE=3 SV=1
Length = 300
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 45/183 (24%)
Query: 262 FRPKA---LCVGVGGGALVSFL-----RTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL 313
F PK L +G+GGG++ S L + +D VE+D VV ++A +YF +
Sbjct: 87 FNPKPERILIIGLGGGSVPSALAELYPESHMDI----VEIDPVVSQIAERYFYFQPSHNT 142
Query: 314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR 373
+V GDA ++++ LK K+D I++ DA
Sbjct: 143 RVHTGDARVYIKR---------------AGLK-----------GQKYDFILL-----DAF 171
Query: 374 NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDV 433
NG P + ++ L+ + +LS G+ V N ++ YD +R VF E Y +
Sbjct: 172 NGEYIPE-HLMTREFLMETKQLLSSSGVLVANTFSTSK-LYDHESATYRSVFGEFYNFKI 229
Query: 434 GNE 436
E
Sbjct: 230 PQE 232
>sp|B5FDT8|UBIG_VIBFM 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio fischeri
(strain MJ11) GN=ubiG PE=3 SV=1
Length = 234
Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE 311
+Y+ E F K L VG GGG L + Q +VVG++M + L VAR +
Sbjct: 41 NYVLENANGLFGKKVLDVGCGGGILAESMAKQ-GADVVGLDMGKEPLTVARLH------- 92
Query: 312 FLQVSVGDAIEFLEKLARQIVGKNPDSF 339
+ G +E+++ A Q +NP+++
Sbjct: 93 --ALETGTKLEYVQSTAEQHAEENPETY 118
>sp|Q5E5J8|UBIG_VIBF1 3-demethylubiquinone-9 3-methyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=ubiG PE=3 SV=1
Length = 234
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE 311
+Y+ E F K L VG GGG L + Q +V+G++M + L VAR +
Sbjct: 41 NYVLENANGLFGKKVLDVGCGGGILAESMAKQ-GADVIGLDMGKEPLTVARLH------- 92
Query: 312 FLQVSVGDAIEFLEKLARQIVGKNPDSF 339
+ G +E+++ A Q +NP+++
Sbjct: 93 --ALETGTKLEYVQSTAEQHAEENPETY 118
>sp|B6YXJ9|SPEE_THEON Probable spermidine synthase OS=Thermococcus onnurineus (strain
NA1) GN=speE PE=3 SV=1
Length = 282
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 34/107 (31%)
Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEF----LQVSVGD 319
+ L +G G GG L LR + + + VE+DE+V+ V+R Y + G F ++ V D
Sbjct: 83 RVLIIGGGDGGTLREVLRHKTVEKAIMVEIDEMVIEVSRIYMNVARGAFEDPRAELIVSD 142
Query: 320 AIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVD 366
+E+L+ D KFDVI+VD
Sbjct: 143 GVEYLKN-----------------------------TDEKFDVIIVD 160
>sp|A1U3K1|UBIG_MARAV 3-demethylubiquinone-9 3-methyltransferase OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiG
PE=3 SV=1
Length = 238
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE 311
+YI ER+ + +AL VG GGG L + + V G++M E L VA+ + GLE G
Sbjct: 40 NYIDERVSLAGK-RALDVGCGGGLLSEGMALR-GAHVTGIDMGEAPLSVAKLH-GLESG- 95
Query: 312 FLQVSVGDAIEFLEKLAR 329
V V +E+LAR
Sbjct: 96 ---VKVDYRQTTIEELAR 110
>sp|Q9HZ63|UBIG_PSEAE 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=ubiG PE=3 SV=1
Length = 232
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE 311
++I ER + K L +G GGG L + Q V G++M E L VAR +
Sbjct: 38 NWIDERAGLAGK-KVLDIGCGGGILSEAM-AQRGASVTGIDMGEAPLAVARLH------- 88
Query: 312 FLQVSVGDAIEFLEKLARQIVGKNPDSF 339
Q+ G A+++ + A Q+ + P F
Sbjct: 89 --QLESGVAVDYRQITAEQMAEEMPGQF 114
>sp|Q02PX7|UBIG_PSEAB 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas
aeruginosa (strain UCBPP-PA14) GN=ubiG PE=3 SV=1
Length = 232
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE 311
++I ER + K L +G GGG L + Q V G++M E L VAR +
Sbjct: 38 NWIDERAGLAGK-KVLDIGCGGGILSEAM-AQRGANVTGIDMGEAPLAVARLH------- 88
Query: 312 FLQVSVGDAIEFLEKLARQIVGKNPDSF 339
Q+ G A+++ + A Q+ + P F
Sbjct: 89 --QLESGVAVDYRQITAEQMAEEMPGQF 114
>sp|B7V9J5|UBIG_PSEA8 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas
aeruginosa (strain LESB58) GN=ubiG PE=3 SV=1
Length = 232
Score = 33.9 bits (76), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE 311
++I ER + K L +G GGG L + Q V G++M E L VAR +
Sbjct: 38 NWIDERAGLAGK-KVLDIGCGGGILSEAM-AQRGASVTGIDMGEAPLAVARLH------- 88
Query: 312 FLQVSVGDAIEFLEKLARQIVGKNPDSF 339
Q+ G A+++ + A Q+ + P F
Sbjct: 89 --QLESGVAVDYRQITAEQMAEEMPGQF 114
>sp|C3K6J1|UBIG_PSEFS 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas
fluorescens (strain SBW25) GN=ubiG PE=3 SV=1
Length = 232
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE 311
++I ER+ + K L VG GGG L + Q V+G++M E L VA+ +
Sbjct: 38 NWIDERVNLAGK-KVLDVGCGGGILSEAM-AQRGATVMGIDMGEAPLAVAQLH------- 88
Query: 312 FLQVSVGDAIEFLEKLARQIVGKNPDSF 339
Q+ G ++E+ + A + + P+ F
Sbjct: 89 --QLESGVSVEYRQITAEALAEEMPEQF 114
>sp|Q9Y8H7|SPEE_NEUCR Spermidine synthase OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=spe-3
PE=3 SV=1
Length = 291
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEF----LQVSVGD 319
K L +G G GG L ++ E + ++DE V+R+++Q+ F ++V VGD
Sbjct: 89 KVLVIGGGDGGVLREVVKHDCVEEAILCDIDEAVIRLSKQFLPHMSAGFEHPKVKVHVGD 148
Query: 320 AIEFLE 325
+FLE
Sbjct: 149 GFKFLE 154
>sp|B4EZ30|UBIG_PROMH 3-demethylubiquinone-9 3-methyltransferase OS=Proteus mirabilis
(strain HI4320) GN=ubiG PE=3 SV=1
Length = 245
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 252 SYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDG 310
+YI ER F K L VG GGG L + ++ EV G++M + L VAR + LE G
Sbjct: 46 NYIQERADGLFGKKVLDVGCGGGILSESM-ARVGAEVTGLDMGKEPLEVARLH-SLETG 102
>sp|O48661|SPD2_ARATH Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2
Length = 340
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 265 KALCVGVGGGALVSFLRTQLDFEVVGV-EMDEVVLRVARQYF-----GLEDGEFLQVSVG 318
K L +G G G ++ + E + + E+D++V+ VA+QYF G ED + + +G
Sbjct: 127 KVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVAKQYFPNVAVGYEDPR-VNLIIG 185
Query: 319 DAIEFLEKLAR 329
D + FL+ A
Sbjct: 186 DGVAFLKNAAE 196
>sp|O48660|SPDE_NICSY Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1
Length = 314
Score = 32.3 bits (72), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 265 KALCVGVGGGALVSFLRTQLDFEVVGV-EMDEVVLRVARQYF-----GLEDGEFLQVSVG 318
K L +G G G ++ + E + + E+D++V+ V++Q+F G ED + + +G
Sbjct: 101 KVLVIGGGDGGVLREVSRHSSVEQIDICEIDKMVVEVSKQFFPDVAVGYEDPR-VNLHIG 159
Query: 319 DAIEFLEKLA 328
D + FL+ +A
Sbjct: 160 DGVAFLKNVA 169
>sp|Q09741|SPEE_SCHPO Spermidine synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=SPBC12C2.07c PE=3 SV=1
Length = 298
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEF----LQVSVGD 319
K L +G G GG L ++ + E + ++DE V++V++QY F ++V +GD
Sbjct: 91 KVLVIGGGDGGVLREVVKHECVEEAILCDIDEDVIKVSKQYLPEMSAGFNHPKVKVHIGD 150
Query: 320 AIEFLE 325
+FL+
Sbjct: 151 GFKFLQ 156
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,404,983
Number of Sequences: 539616
Number of extensions: 7823026
Number of successful extensions: 19665
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 19630
Number of HSP's gapped (non-prelim): 53
length of query: 478
length of database: 191,569,459
effective HSP length: 121
effective length of query: 357
effective length of database: 126,275,923
effective search space: 45080504511
effective search space used: 45080504511
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)