Query 038592
Match_columns 478
No_of_seqs 356 out of 1978
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2352 Predicted spermine/spe 100.0 1.2E-45 2.5E-50 384.2 10.9 315 62-478 165-482 (482)
2 PRK04457 spermidine synthase; 100.0 4.3E-29 9.4E-34 248.2 25.6 189 190-446 26-217 (262)
3 PF01564 Spermine_synth: Sperm 100.0 3.8E-29 8.3E-34 246.4 22.3 209 155-447 18-239 (246)
4 PLN02823 spermine synthase 100.0 2.6E-28 5.5E-33 250.0 24.8 212 155-448 45-270 (336)
5 COG0421 SpeE Spermidine syntha 100.0 1.6E-27 3.6E-32 238.3 23.2 213 155-451 18-243 (282)
6 PLN02366 spermidine synthase 99.9 4.4E-26 9.6E-31 231.2 24.5 209 155-446 33-254 (308)
7 PRK00811 spermidine synthase; 99.9 5E-26 1.1E-30 228.6 23.6 208 155-446 18-238 (283)
8 PRK01581 speE spermidine synth 99.9 3.5E-25 7.6E-30 226.9 24.3 211 156-451 95-319 (374)
9 PRK00536 speE spermidine synth 99.9 5.4E-25 1.2E-29 218.0 20.1 194 155-447 15-217 (262)
10 TIGR00417 speE spermidine synt 99.9 3.9E-23 8.4E-28 206.3 23.6 208 155-446 14-233 (270)
11 PRK03612 spermidine synthase; 99.8 2E-19 4.4E-24 194.8 22.8 212 155-447 236-461 (521)
12 COG4262 Predicted spermidine s 99.7 4E-17 8.8E-22 164.7 16.8 209 158-451 235-457 (508)
13 KOG1562 Spermidine synthase [A 99.7 1.5E-18 3.3E-23 171.2 6.5 194 155-431 63-264 (337)
14 COG4122 Predicted O-methyltran 99.3 4.2E-11 9.1E-16 116.0 15.3 127 263-430 60-197 (219)
15 PF01596 Methyltransf_3: O-met 99.3 1.1E-11 2.4E-16 119.4 10.9 109 263-408 46-158 (205)
16 PF12847 Methyltransf_18: Meth 99.3 6.8E-12 1.5E-16 107.3 8.1 108 263-406 2-111 (112)
17 PLN02781 Probable caffeoyl-CoA 99.2 2E-10 4.2E-15 112.8 13.3 109 263-408 69-181 (234)
18 PLN02476 O-methyltransferase 99.2 3.1E-10 6.6E-15 113.9 13.5 110 263-409 119-232 (278)
19 PLN02589 caffeoyl-CoA O-methyl 99.2 3.2E-10 6.9E-15 112.2 12.7 111 263-409 80-194 (247)
20 PF13659 Methyltransf_26: Meth 99.1 3.8E-10 8.3E-15 97.3 10.9 114 264-407 2-116 (117)
21 PRK00107 gidB 16S rRNA methylt 99.0 7.1E-09 1.5E-13 98.5 15.7 146 237-434 27-173 (187)
22 TIGR02469 CbiT precorrin-6Y C5 99.0 2.4E-09 5.3E-14 92.5 11.3 103 263-407 20-123 (124)
23 PF05175 MTS: Methyltransferas 99.0 2.2E-09 4.8E-14 100.0 11.0 130 263-433 32-162 (170)
24 TIGR00138 gidB 16S rRNA methyl 99.0 6.4E-09 1.4E-13 98.2 12.9 102 263-409 43-145 (181)
25 COG4123 Predicted O-methyltran 99.0 1.6E-08 3.6E-13 99.6 16.2 149 263-444 45-210 (248)
26 PLN03075 nicotianamine synthas 99.0 3.8E-09 8.2E-14 106.8 11.3 149 262-449 123-278 (296)
27 TIGR00091 tRNA (guanine-N(7)-) 98.9 1.9E-08 4.1E-13 95.7 14.5 131 263-424 17-148 (194)
28 PRK00121 trmB tRNA (guanine-N( 98.9 2.7E-08 5.9E-13 95.3 14.8 128 263-423 41-171 (202)
29 PRK00377 cbiT cobalt-precorrin 98.8 4.9E-08 1.1E-12 93.0 13.8 118 263-424 41-161 (198)
30 PRK08287 cobalt-precorrin-6Y C 98.8 3.9E-08 8.4E-13 92.7 12.8 114 263-423 32-146 (187)
31 TIGR00446 nop2p NOL1/NOP2/sun 98.8 1.3E-07 2.7E-12 94.5 16.7 135 263-429 72-222 (264)
32 PF13847 Methyltransf_31: Meth 98.8 1.3E-08 2.8E-13 92.6 8.3 110 263-412 4-116 (152)
33 COG2518 Pcm Protein-L-isoaspar 98.8 1.3E-08 2.9E-13 97.7 8.7 117 235-408 55-171 (209)
34 TIGR00080 pimt protein-L-isoas 98.8 2.1E-08 4.5E-13 96.8 10.1 100 263-408 78-179 (215)
35 COG2519 GCD14 tRNA(1-methylade 98.8 3.3E-08 7.1E-13 97.1 11.4 118 263-428 95-216 (256)
36 COG2521 Predicted archaeal met 98.8 1.9E-08 4.2E-13 97.3 9.6 134 263-431 135-276 (287)
37 COG2227 UbiG 2-polyprenyl-3-me 98.8 3.3E-08 7.1E-13 96.5 11.1 108 263-412 60-167 (243)
38 PRK13942 protein-L-isoaspartat 98.8 3E-08 6.4E-13 95.8 10.8 99 263-407 77-177 (212)
39 PRK11036 putative S-adenosyl-L 98.8 4.6E-08 9.9E-13 96.8 12.4 108 263-410 45-153 (255)
40 PRK09328 N5-glutamine S-adenos 98.8 1.4E-07 2.9E-12 93.7 14.8 148 263-444 109-274 (275)
41 PRK01683 trans-aconitate 2-met 98.7 1.4E-07 3.1E-12 93.0 13.8 100 263-408 32-132 (258)
42 PRK15128 23S rRNA m(5)C1962 me 98.7 1.9E-07 4.2E-12 98.4 15.5 112 263-406 221-339 (396)
43 TIGR03534 RF_mod_PrmC protein- 98.7 1.3E-07 2.8E-12 92.3 13.3 115 263-409 88-220 (251)
44 PLN02396 hexaprenyldihydroxybe 98.7 6E-08 1.3E-12 99.6 11.3 107 263-410 132-239 (322)
45 TIGR00537 hemK_rel_arch HemK-r 98.7 2.7E-07 5.9E-12 86.3 14.9 126 263-424 20-156 (179)
46 PRK14903 16S rRNA methyltransf 98.7 2.2E-07 4.7E-12 99.1 16.0 139 263-432 238-392 (431)
47 PRK15001 SAM-dependent 23S rib 98.7 2.5E-07 5.4E-12 96.9 15.8 127 264-431 230-360 (378)
48 PRK14103 trans-aconitate 2-met 98.7 1.4E-07 3E-12 93.3 13.2 98 263-408 30-128 (255)
49 PRK15451 tRNA cmo(5)U34 methyl 98.7 8.8E-08 1.9E-12 94.5 11.5 103 263-405 57-163 (247)
50 PRK07402 precorrin-6B methylas 98.7 1.5E-07 3.3E-12 89.4 12.6 104 263-409 41-145 (196)
51 TIGR02752 MenG_heptapren 2-hep 98.7 7.1E-07 1.5E-11 86.4 17.5 102 263-404 46-149 (231)
52 TIGR03533 L3_gln_methyl protei 98.7 3.3E-07 7.2E-12 92.5 15.5 115 263-408 122-253 (284)
53 PRK11207 tellurite resistance 98.7 8.5E-08 1.8E-12 91.5 10.5 102 263-404 31-132 (197)
54 PRK11805 N5-glutamine S-adenos 98.7 4.5E-07 9.7E-12 92.6 16.3 143 264-445 135-296 (307)
55 PRK13944 protein-L-isoaspartat 98.7 1.1E-07 2.3E-12 91.4 10.7 99 263-407 73-174 (205)
56 PRK10909 rsmD 16S rRNA m(2)G96 98.7 2.2E-07 4.7E-12 89.2 12.7 105 263-408 54-161 (199)
57 TIGR00740 methyltransferase, p 98.7 3.5E-07 7.5E-12 89.5 13.9 103 263-405 54-160 (239)
58 PF08241 Methyltransf_11: Meth 98.7 5.9E-08 1.3E-12 79.4 7.0 94 267-404 1-95 (95)
59 PF01209 Ubie_methyltran: ubiE 98.7 7.1E-08 1.5E-12 94.7 8.5 116 263-418 48-166 (233)
60 PRK14904 16S rRNA methyltransf 98.6 4.7E-07 1E-11 96.9 15.2 132 263-427 251-398 (445)
61 PLN02233 ubiquinone biosynthes 98.6 4.5E-07 9.8E-12 90.4 14.0 107 263-409 74-185 (261)
62 PRK04266 fibrillarin; Provisio 98.6 6.1E-07 1.3E-11 87.8 14.5 141 263-444 73-224 (226)
63 PTZ00098 phosphoethanolamine N 98.6 1.8E-07 4E-12 93.3 11.0 105 263-408 53-158 (263)
64 TIGR00406 prmA ribosomal prote 98.6 4.5E-07 9.7E-12 91.7 13.8 117 263-426 160-277 (288)
65 PLN02244 tocopherol O-methyltr 98.6 2.1E-07 4.6E-12 96.2 11.7 105 263-407 119-224 (340)
66 PRK11188 rrmJ 23S rRNA methylt 98.6 7.5E-07 1.6E-11 86.0 14.7 141 263-444 52-205 (209)
67 PRK11783 rlmL 23S rRNA m(2)G24 98.6 2.5E-07 5.3E-12 104.3 12.8 115 263-409 539-659 (702)
68 PRK14902 16S rRNA methyltransf 98.6 6.7E-07 1.5E-11 95.6 15.1 134 263-427 251-400 (444)
69 TIGR00536 hemK_fam HemK family 98.6 8.4E-07 1.8E-11 89.4 14.7 147 264-444 116-281 (284)
70 PRK14968 putative methyltransf 98.6 8.7E-07 1.9E-11 82.4 13.8 115 263-409 24-151 (188)
71 COG2226 UbiE Methylase involve 98.6 7.9E-07 1.7E-11 87.5 13.9 107 263-409 52-159 (238)
72 PF13649 Methyltransf_25: Meth 98.6 1.6E-07 3.5E-12 79.5 7.5 94 266-400 1-101 (101)
73 TIGR00477 tehB tellurite resis 98.6 4.5E-07 9.7E-12 86.4 11.3 101 263-404 31-131 (195)
74 TIGR02072 BioC biotin biosynth 98.6 5.5E-07 1.2E-11 86.5 11.4 103 263-409 35-138 (240)
75 KOG1663 O-methyltransferase [S 98.5 6.1E-07 1.3E-11 87.0 11.4 110 263-409 74-187 (237)
76 PRK01544 bifunctional N5-gluta 98.5 8.5E-07 1.9E-11 96.4 13.9 152 263-448 139-309 (506)
77 PRK00312 pcm protein-L-isoaspa 98.5 4.5E-07 9.9E-12 87.1 10.5 98 263-407 79-176 (212)
78 PRK09489 rsmC 16S ribosomal RN 98.5 1.3E-06 2.9E-11 90.5 14.6 140 263-446 197-337 (342)
79 PF01135 PCMT: Protein-L-isoas 98.5 8.8E-08 1.9E-12 92.6 5.4 100 263-408 73-174 (209)
80 TIGR00438 rrmJ cell division p 98.5 2.8E-06 6.1E-11 80.1 15.5 142 263-444 33-186 (188)
81 PRK14967 putative methyltransf 98.5 5.3E-07 1.1E-11 87.5 10.7 127 263-423 37-174 (223)
82 PF02353 CMAS: Mycolic acid cy 98.5 3.1E-07 6.7E-12 92.3 9.4 103 263-409 63-169 (273)
83 cd02440 AdoMet_MTases S-adenos 98.5 9.6E-07 2.1E-11 71.5 10.7 103 265-405 1-103 (107)
84 PRK14121 tRNA (guanine-N(7)-)- 98.5 1.2E-06 2.5E-11 91.9 13.7 128 263-424 123-251 (390)
85 TIGR03704 PrmC_rel_meth putati 98.5 7.7E-07 1.7E-11 88.3 11.5 127 263-423 87-230 (251)
86 COG2242 CobL Precorrin-6B meth 98.5 1.6E-06 3.5E-11 81.9 12.7 125 263-433 35-161 (187)
87 COG2230 Cfa Cyclopropane fatty 98.5 6E-07 1.3E-11 90.2 10.3 125 263-429 73-200 (283)
88 PF08704 GCD14: tRNA methyltra 98.5 6.1E-07 1.3E-11 88.9 10.0 122 263-429 41-168 (247)
89 PRK10901 16S rRNA methyltransf 98.5 2.9E-06 6.2E-11 90.4 15.8 134 263-427 245-393 (427)
90 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 5.7E-06 1.2E-10 78.8 16.1 100 263-404 40-141 (223)
91 COG1092 Predicted SAM-dependen 98.5 1.7E-06 3.6E-11 90.9 13.4 114 263-409 218-339 (393)
92 PRK00517 prmA ribosomal protei 98.5 2.8E-06 6E-11 84.0 14.3 109 263-424 120-229 (250)
93 PRK14901 16S rRNA methyltransf 98.5 2.9E-06 6.2E-11 90.6 15.1 139 263-428 253-406 (434)
94 PF05401 NodS: Nodulation prot 98.5 3.2E-06 6.9E-11 80.6 13.7 140 264-449 45-199 (201)
95 PRK11873 arsM arsenite S-adeno 98.5 1.4E-06 3.1E-11 86.7 12.0 103 263-405 78-182 (272)
96 PRK14966 unknown domain/N5-glu 98.5 3.7E-06 8E-11 88.9 15.2 149 263-444 252-417 (423)
97 PLN02336 phosphoethanolamine N 98.4 1.6E-06 3.4E-11 93.3 12.2 106 263-409 267-372 (475)
98 smart00650 rADc Ribosomal RNA 98.4 1.6E-06 3.6E-11 80.4 10.7 99 263-407 14-114 (169)
99 PRK10258 biotin biosynthesis p 98.4 1.8E-06 4E-11 84.8 11.5 101 263-409 43-143 (251)
100 smart00828 PKS_MT Methyltransf 98.4 7.8E-07 1.7E-11 85.7 8.6 102 264-406 1-104 (224)
101 TIGR00563 rsmB ribosomal RNA s 98.4 4.2E-06 9.2E-11 89.1 14.5 136 263-428 239-390 (426)
102 PRK13943 protein-L-isoaspartat 98.4 1.9E-06 4.1E-11 88.6 11.2 98 263-406 81-180 (322)
103 PRK11705 cyclopropane fatty ac 98.4 2.5E-06 5.5E-11 89.7 12.3 102 263-409 168-270 (383)
104 TIGR03840 TMPT_Se_Te thiopurin 98.4 1.3E-06 2.7E-11 84.8 9.1 104 263-404 35-150 (213)
105 PF08242 Methyltransf_12: Meth 98.4 3.1E-08 6.6E-13 83.3 -2.0 95 267-402 1-99 (99)
106 KOG1270 Methyltransferases [Co 98.4 2.6E-07 5.6E-12 91.1 4.1 102 263-409 90-198 (282)
107 TIGR00095 RNA methyltransferas 98.4 5.2E-06 1.1E-10 79.0 12.9 107 263-407 50-160 (189)
108 PRK00216 ubiE ubiquinone/menaq 98.4 2.9E-06 6.3E-11 81.7 11.3 103 263-405 52-157 (239)
109 PTZ00146 fibrillarin; Provisio 98.4 1.1E-05 2.4E-10 81.6 15.6 140 263-447 133-288 (293)
110 PRK12335 tellurite resistance 98.4 2E-06 4.2E-11 86.8 10.3 101 263-404 121-221 (287)
111 PRK05134 bifunctional 3-demeth 98.4 4.2E-06 9.2E-11 81.2 12.0 106 263-409 49-154 (233)
112 PRK08317 hypothetical protein; 98.3 7.5E-06 1.6E-10 78.4 13.5 103 263-406 20-124 (241)
113 PLN02490 MPBQ/MSBQ methyltrans 98.3 4.5E-06 9.7E-11 86.4 12.0 99 263-404 114-213 (340)
114 COG2813 RsmC 16S RNA G1207 met 98.3 9.6E-06 2.1E-10 82.0 14.0 127 263-433 159-288 (300)
115 COG2890 HemK Methylase of poly 98.3 8.1E-06 1.8E-10 82.4 13.6 146 265-445 113-276 (280)
116 KOG2899 Predicted methyltransf 98.3 2.6E-06 5.6E-11 83.2 9.3 127 263-404 59-207 (288)
117 COG4106 Tam Trans-aconitate me 98.3 3.8E-06 8.1E-11 80.9 9.8 101 263-409 31-132 (257)
118 PRK11088 rrmA 23S rRNA methylt 98.3 3E-06 6.5E-11 84.8 9.3 94 263-408 86-183 (272)
119 PF03602 Cons_hypoth95: Conser 98.3 4.5E-06 9.8E-11 79.1 9.9 109 263-409 43-156 (183)
120 PRK13255 thiopurine S-methyltr 98.3 2.9E-06 6.2E-11 82.6 8.7 102 263-402 38-151 (218)
121 PLN02672 methionine S-methyltr 98.2 9.7E-06 2.1E-10 94.4 13.8 121 263-413 119-285 (1082)
122 PF06325 PrmA: Ribosomal prote 98.2 3.4E-06 7.4E-11 85.7 8.5 130 263-444 162-292 (295)
123 PF10672 Methyltrans_SAM: S-ad 98.2 2.1E-05 4.5E-10 79.6 14.1 112 263-409 124-241 (286)
124 PHA03412 putative methyltransf 98.2 7.2E-06 1.6E-10 80.6 10.4 105 263-404 50-160 (241)
125 TIGR01983 UbiG ubiquinone bios 98.2 9.8E-06 2.1E-10 77.9 11.3 107 263-409 46-152 (224)
126 smart00138 MeTrc Methyltransfe 98.2 2.6E-06 5.6E-11 85.2 7.3 43 262-304 99-151 (264)
127 TIGR00479 rumA 23S rRNA (uraci 98.2 1.1E-05 2.5E-10 85.8 12.7 102 263-404 293-394 (431)
128 KOG1540 Ubiquinone biosynthesi 98.2 1.2E-05 2.6E-10 79.2 11.6 108 261-408 99-216 (296)
129 PRK05785 hypothetical protein; 98.2 1.8E-05 4E-10 77.2 13.1 104 263-415 52-155 (226)
130 PHA03411 putative methyltransf 98.2 1.8E-05 3.8E-10 79.5 12.8 110 263-408 65-185 (279)
131 KOG4300 Predicted methyltransf 98.2 5E-06 1.1E-10 79.6 8.3 125 263-428 77-202 (252)
132 PRK06922 hypothetical protein; 98.2 8.4E-06 1.8E-10 90.1 11.3 113 263-406 419-537 (677)
133 PRK03522 rumB 23S rRNA methylu 98.2 1.6E-05 3.4E-10 81.5 12.4 99 263-404 174-272 (315)
134 TIGR02021 BchM-ChlM magnesium 98.2 1.4E-05 3.1E-10 77.0 11.6 99 263-404 56-156 (219)
135 COG2264 PrmA Ribosomal protein 98.2 1.4E-05 3E-10 81.1 11.5 133 263-444 163-297 (300)
136 PF03848 TehB: Tellurite resis 98.2 5.6E-06 1.2E-10 79.1 8.2 103 263-406 31-133 (192)
137 PRK11933 yebU rRNA (cytosine-C 98.2 5.2E-05 1.1E-09 81.7 16.2 134 263-427 114-263 (470)
138 PF02390 Methyltransf_4: Putat 98.1 9.1E-06 2E-10 77.8 9.1 130 264-424 19-149 (195)
139 TIGR03587 Pse_Me-ase pseudamin 98.1 4.7E-05 1E-09 73.3 13.8 122 263-429 44-177 (204)
140 TIGR03438 probable methyltrans 98.1 2.2E-05 4.8E-10 79.9 12.1 112 263-407 64-178 (301)
141 TIGR02716 C20_methyl_CrtF C-20 98.1 1.2E-05 2.5E-10 81.7 9.9 102 263-405 150-253 (306)
142 PLN02336 phosphoethanolamine N 98.1 1.2E-05 2.7E-10 86.4 10.6 104 263-405 38-141 (475)
143 PF13489 Methyltransf_23: Meth 98.1 1.2E-05 2.7E-10 72.3 9.0 97 263-410 23-119 (161)
144 KOG1709 Guanidinoacetate methy 98.1 2.6E-05 5.6E-10 75.1 11.2 126 263-434 102-228 (271)
145 PRK15068 tRNA mo(5)U34 methylt 98.1 1.9E-05 4.2E-10 81.1 11.3 101 263-406 123-226 (322)
146 TIGR00452 methyltransferase, p 98.1 2.5E-05 5.4E-10 80.1 12.0 101 263-406 122-225 (314)
147 PRK13168 rumA 23S rRNA m(5)U19 98.1 2.2E-05 4.8E-10 84.0 12.0 103 263-406 298-400 (443)
148 TIGR02085 meth_trns_rumB 23S r 98.1 3E-05 6.5E-10 81.3 12.4 100 263-405 234-333 (374)
149 PF05185 PRMT5: PRMT5 arginine 98.1 1E-05 2.3E-10 86.6 8.9 125 237-403 164-294 (448)
150 TIGR01177 conserved hypothetic 98.1 2E-05 4.3E-10 81.1 10.7 113 263-409 183-297 (329)
151 COG0220 Predicted S-adenosylme 98.0 5.8E-05 1.2E-09 74.0 12.1 120 264-416 50-172 (227)
152 PRK06202 hypothetical protein; 98.0 6.6E-05 1.4E-09 73.1 12.2 107 262-411 60-171 (232)
153 PRK04338 N(2),N(2)-dimethylgua 98.0 4.7E-05 1E-09 80.2 11.3 98 264-405 59-157 (382)
154 PTZ00338 dimethyladenosine tra 98.0 5.7E-05 1.2E-09 76.8 11.3 60 263-323 37-97 (294)
155 PRK05031 tRNA (uracil-5-)-meth 97.9 8.7E-05 1.9E-09 77.6 12.5 63 264-327 208-270 (362)
156 PLN02585 magnesium protoporphy 97.9 6.4E-05 1.4E-09 77.2 11.2 58 263-321 145-207 (315)
157 TIGR02143 trmA_only tRNA (urac 97.9 9.6E-05 2.1E-09 77.0 12.1 62 264-326 199-260 (353)
158 PRK07580 Mg-protoporphyrin IX 97.9 7.9E-05 1.7E-09 71.8 10.5 56 263-319 64-120 (230)
159 PF07021 MetW: Methionine bios 97.9 4.5E-05 9.7E-10 72.6 8.3 68 263-365 14-81 (193)
160 PF05891 Methyltransf_PK: AdoM 97.9 3.9E-05 8.4E-10 74.3 7.8 105 263-409 56-166 (218)
161 TIGR00308 TRM1 tRNA(guanine-26 97.9 0.00011 2.3E-09 77.2 11.7 100 263-405 45-146 (374)
162 PF00891 Methyltransf_2: O-met 97.9 2.2E-05 4.7E-10 76.8 6.0 95 262-404 100-197 (241)
163 PRK13256 thiopurine S-methyltr 97.8 7.1E-05 1.5E-09 73.3 9.2 133 263-432 44-193 (226)
164 PRK14896 ksgA 16S ribosomal RN 97.8 0.00013 2.8E-09 72.6 11.0 58 263-323 30-87 (258)
165 KOG3010 Methyltransferase [Gen 97.8 5.3E-05 1.1E-09 74.2 7.9 102 264-408 35-139 (261)
166 PF05724 TPMT: Thiopurine S-me 97.8 9.8E-05 2.1E-09 72.0 9.1 131 263-432 38-186 (218)
167 COG0742 N6-adenine-specific me 97.8 0.00025 5.3E-09 67.4 11.2 108 263-409 44-157 (187)
168 COG0030 KsgA Dimethyladenosine 97.7 0.00022 4.8E-09 71.1 11.0 58 263-323 31-88 (259)
169 KOG2904 Predicted methyltransf 97.7 0.00027 5.9E-09 70.4 11.4 155 263-443 149-325 (328)
170 PF13578 Methyltransf_24: Meth 97.7 2.2E-05 4.9E-10 66.8 3.4 97 267-405 1-104 (106)
171 COG2263 Predicted RNA methylas 97.7 0.00053 1.1E-08 65.1 11.6 92 263-396 46-137 (198)
172 COG3963 Phospholipid N-methylt 97.7 0.00066 1.4E-08 63.3 11.9 109 263-409 49-159 (194)
173 TIGR00755 ksgA dimethyladenosi 97.6 0.00043 9.2E-09 68.6 10.5 58 263-323 30-87 (253)
174 KOG1661 Protein-L-isoaspartate 97.6 0.00021 4.6E-09 68.7 7.3 99 263-407 83-194 (237)
175 TIGR02081 metW methionine bios 97.5 0.00023 5E-09 67.5 7.6 91 263-398 14-104 (194)
176 PRK00274 ksgA 16S ribosomal RN 97.5 0.00023 4.9E-09 71.4 7.1 57 263-323 43-99 (272)
177 PF03059 NAS: Nicotianamine sy 97.5 0.00017 3.7E-09 72.5 6.1 147 262-448 120-274 (276)
178 PLN02232 ubiquinone biosynthes 97.5 0.00076 1.7E-08 62.2 9.9 81 289-409 1-84 (160)
179 PRK11727 23S rRNA mA1618 methy 97.4 0.00048 1E-08 70.9 8.7 63 261-323 113-179 (321)
180 COG4976 Predicted methyltransf 97.4 6.1E-05 1.3E-09 73.3 1.6 101 263-408 126-227 (287)
181 PF01269 Fibrillarin: Fibrilla 97.4 0.0012 2.6E-08 64.3 10.4 137 263-444 74-226 (229)
182 PF10294 Methyltransf_16: Puta 97.4 0.00078 1.7E-08 63.1 8.9 123 262-423 45-172 (173)
183 KOG1271 Methyltransferases [Ge 97.4 0.0009 2E-08 63.2 9.0 107 263-407 68-182 (227)
184 KOG1541 Predicted protein carb 97.4 0.00057 1.2E-08 66.3 7.8 127 263-428 51-183 (270)
185 COG4076 Predicted RNA methylas 97.4 0.00025 5.4E-09 67.2 5.2 96 264-403 34-132 (252)
186 PF01728 FtsJ: FtsJ-like methy 97.3 0.0004 8.6E-09 64.9 6.3 140 262-442 23-176 (181)
187 COG0144 Sun tRNA and rRNA cyto 97.3 0.0037 8.1E-08 65.3 13.9 137 263-428 157-310 (355)
188 PRK01544 bifunctional N5-gluta 97.3 0.0038 8.2E-08 68.2 14.3 129 263-423 348-477 (506)
189 PRK00050 16S rRNA m(4)C1402 me 97.3 0.0015 3.2E-08 66.6 10.3 79 264-370 21-101 (296)
190 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.3 0.0044 9.6E-08 62.7 13.7 141 263-432 86-245 (283)
191 PF05430 Methyltransf_30: S-ad 97.3 0.00064 1.4E-08 60.6 6.5 92 311-445 31-123 (124)
192 PRK01747 mnmC bifunctional tRN 97.3 0.0021 4.4E-08 72.3 11.9 108 263-406 58-206 (662)
193 KOG0820 Ribosomal RNA adenine 97.2 0.0011 2.4E-08 66.1 8.2 60 263-323 59-119 (315)
194 KOG3191 Predicted N6-DNA-methy 97.2 0.0062 1.3E-07 57.6 12.6 122 263-424 44-184 (209)
195 PF02475 Met_10: Met-10+ like- 97.0 0.0015 3.1E-08 63.0 6.2 96 263-403 102-199 (200)
196 COG1352 CheR Methylase of chem 96.9 0.0036 7.8E-08 62.9 8.8 123 262-404 96-239 (268)
197 PF00398 RrnaAD: Ribosomal RNA 96.9 0.0013 2.8E-08 65.6 5.7 58 263-323 31-88 (262)
198 PF01739 CheR: CheR methyltran 96.9 0.0013 2.8E-08 63.2 5.4 42 262-303 31-82 (196)
199 PRK10742 putative methyltransf 96.8 0.0051 1.1E-07 61.0 8.6 65 261-326 87-160 (250)
200 PF02527 GidB: rRNA small subu 96.7 0.033 7.1E-07 53.0 12.7 120 237-410 29-152 (184)
201 PRK10611 chemotaxis methyltran 96.6 0.0088 1.9E-07 60.7 9.1 42 263-304 116-166 (287)
202 KOG1500 Protein arginine N-met 96.6 0.012 2.5E-07 60.5 9.2 99 263-404 178-280 (517)
203 PRK04148 hypothetical protein; 96.4 0.0095 2.1E-07 53.8 7.1 53 263-323 17-70 (134)
204 KOG2915 tRNA(1-methyladenosine 96.4 0.031 6.7E-07 56.0 11.2 127 263-433 106-236 (314)
205 PF08003 Methyltransf_9: Prote 96.4 0.017 3.8E-07 58.8 9.3 102 263-407 116-220 (315)
206 PF09445 Methyltransf_15: RNA 96.2 0.0067 1.5E-07 56.6 5.1 61 265-326 2-63 (163)
207 PF03291 Pox_MCEL: mRNA cappin 96.2 0.0085 1.8E-07 62.1 6.3 146 262-448 62-238 (331)
208 PF05219 DREV: DREV methyltran 96.2 0.031 6.7E-07 55.8 9.8 94 263-407 95-189 (265)
209 KOG1499 Protein arginine N-met 96.2 0.011 2.4E-07 61.0 6.6 99 263-403 61-164 (346)
210 COG2265 TrmA SAM-dependent met 96.1 0.053 1.1E-06 58.2 12.0 111 263-416 294-404 (432)
211 PF01861 DUF43: Protein of unk 96.0 0.04 8.6E-07 54.4 9.6 106 263-410 45-153 (243)
212 TIGR00478 tly hemolysin TlyA f 96.0 0.013 2.9E-07 57.5 6.4 38 263-300 76-113 (228)
213 KOG3178 Hydroxyindole-O-methyl 96.0 0.02 4.3E-07 59.2 7.5 95 264-409 179-280 (342)
214 TIGR02987 met_A_Alw26 type II 95.9 0.026 5.7E-07 61.8 8.7 61 263-323 32-101 (524)
215 KOG0024 Sorbitol dehydrogenase 95.9 0.07 1.5E-06 54.8 10.9 105 263-409 170-276 (354)
216 KOG0822 Protein kinase inhibit 95.7 0.02 4.4E-07 61.8 6.6 151 238-432 347-511 (649)
217 COG1041 Predicted DNA modifica 95.6 0.029 6.3E-07 58.1 7.1 110 264-407 199-311 (347)
218 COG2520 Predicted methyltransf 95.6 0.11 2.3E-06 54.1 11.2 119 263-425 189-308 (341)
219 COG0287 TyrA Prephenate dehydr 95.5 0.15 3.3E-06 51.6 11.5 131 263-449 3-147 (279)
220 TIGR00006 S-adenosyl-methyltra 95.4 0.13 2.7E-06 52.8 10.8 80 264-369 22-102 (305)
221 PF07942 N2227: N2227-like pro 95.4 0.038 8.3E-07 55.6 6.8 40 262-302 56-95 (270)
222 PF05958 tRNA_U5-meth_tr: tRNA 95.2 0.058 1.3E-06 56.3 7.8 127 264-423 198-324 (352)
223 COG0357 GidB Predicted S-adeno 95.2 0.35 7.5E-06 47.2 12.6 144 236-434 47-199 (215)
224 PF02384 N6_Mtase: N-6 DNA Met 95.1 0.072 1.6E-06 54.0 8.1 117 263-407 47-184 (311)
225 KOG1975 mRNA cap methyltransfe 95.1 0.078 1.7E-06 54.4 8.0 121 263-424 118-250 (389)
226 PF12147 Methyltransf_20: Puta 95.1 0.19 4.2E-06 51.0 10.7 125 261-424 134-266 (311)
227 PRK11760 putative 23S rRNA C24 95.1 0.18 4E-06 52.4 10.7 111 263-425 212-327 (357)
228 COG0275 Predicted S-adenosylme 95.0 0.14 2.9E-06 52.3 9.3 80 264-369 25-106 (314)
229 COG0293 FtsJ 23S rRNA methylas 94.9 0.29 6.2E-06 47.4 10.9 131 263-433 46-184 (205)
230 COG1063 Tdh Threonine dehydrog 94.8 0.28 6E-06 51.0 11.5 99 265-409 171-272 (350)
231 PF13679 Methyltransf_32: Meth 94.7 0.08 1.7E-06 47.7 6.4 43 263-305 26-73 (141)
232 KOG2361 Predicted methyltransf 94.7 0.043 9.3E-07 54.2 4.9 111 263-408 72-185 (264)
233 KOG1596 Fibrillarin and relate 94.7 0.15 3.3E-06 50.4 8.4 116 263-423 157-285 (317)
234 PF01170 UPF0020: Putative RNA 94.6 0.2 4.3E-06 47.2 9.0 108 263-402 29-147 (179)
235 PF02005 TRM: N2,N2-dimethylgu 94.6 0.12 2.7E-06 54.4 8.3 101 263-406 50-154 (377)
236 TIGR01444 fkbM_fam methyltrans 94.5 0.092 2E-06 46.6 6.2 53 266-318 2-55 (143)
237 PF04816 DUF633: Family of unk 94.4 0.19 4.1E-06 48.7 8.5 154 266-465 1-160 (205)
238 COG1064 AdhP Zn-dependent alco 94.2 0.37 7.9E-06 50.1 10.6 95 262-408 166-261 (339)
239 KOG1122 tRNA and rRNA cytosine 94.2 0.21 4.5E-06 52.9 8.8 141 263-433 242-398 (460)
240 KOG2730 Methylase [General fun 94.2 0.16 3.5E-06 49.6 7.3 61 264-327 96-159 (263)
241 COG1889 NOP1 Fibrillarin-like 93.9 0.5 1.1E-05 45.7 9.9 125 263-432 77-214 (231)
242 PRK09424 pntA NAD(P) transhydr 93.7 0.57 1.2E-05 51.4 11.5 44 263-307 165-209 (509)
243 PRK08818 prephenate dehydrogen 93.7 0.24 5.3E-06 52.1 8.3 89 263-417 4-98 (370)
244 TIGR03439 methyl_EasF probable 93.5 0.8 1.7E-05 47.3 11.6 114 263-407 77-198 (319)
245 PRK11524 putative methyltransf 93.5 0.26 5.6E-06 49.8 7.8 70 311-409 7-83 (284)
246 PRK09260 3-hydroxybutyryl-CoA 93.4 0.21 4.6E-06 50.2 7.2 40 264-304 2-43 (288)
247 TIGR00561 pntA NAD(P) transhyd 93.3 0.89 1.9E-05 49.9 12.1 44 263-307 164-208 (511)
248 PF01262 AlaDh_PNT_C: Alanine 93.3 0.32 6.9E-06 45.2 7.6 44 263-306 20-64 (168)
249 COG0500 SmtA SAM-dependent met 93.3 0.85 1.8E-05 37.7 9.5 102 266-409 52-158 (257)
250 KOG4589 Cell division protein 93.0 3.5 7.6E-05 39.6 13.8 144 263-447 70-227 (232)
251 COG1867 TRM1 N2,N2-dimethylgua 92.8 0.67 1.5E-05 48.5 9.7 101 263-406 53-154 (380)
252 PF03721 UDPG_MGDP_dh_N: UDP-g 92.8 2 4.4E-05 40.7 12.4 38 265-303 2-41 (185)
253 KOG2940 Predicted methyltransf 92.7 0.13 2.8E-06 50.6 4.0 103 263-409 73-177 (325)
254 PRK06130 3-hydroxybutyryl-CoA 92.6 0.84 1.8E-05 46.3 10.2 40 264-304 5-46 (311)
255 PF04989 CmcI: Cephalosporin h 92.5 0.34 7.3E-06 47.0 6.6 152 236-433 14-187 (206)
256 PRK07417 arogenate dehydrogena 92.4 0.85 1.9E-05 45.7 9.8 39 265-304 2-42 (279)
257 PRK07502 cyclohexadienyl dehyd 92.4 1.2 2.6E-05 45.3 10.9 40 264-303 7-49 (307)
258 PRK11783 rlmL 23S rRNA m(2)G24 92.4 0.96 2.1E-05 51.6 11.2 79 239-323 173-295 (702)
259 PF11599 AviRa: RRNA methyltra 92.4 0.98 2.1E-05 44.2 9.6 161 262-436 51-235 (246)
260 PF03446 NAD_binding_2: NAD bi 92.3 2.5 5.4E-05 38.8 12.1 126 264-444 2-137 (163)
261 PF01795 Methyltransf_5: MraW 92.2 0.63 1.4E-05 47.9 8.6 80 264-368 22-102 (310)
262 PRK05808 3-hydroxybutyryl-CoA 92.2 1.1 2.4E-05 44.9 10.3 114 264-412 4-124 (282)
263 TIGR00518 alaDH alanine dehydr 92.2 1.7 3.6E-05 45.8 12.0 44 263-306 167-211 (370)
264 PRK08293 3-hydroxybutyryl-CoA 92.2 1.2 2.6E-05 44.8 10.5 40 264-304 4-45 (287)
265 PF06080 DUF938: Protein of un 92.0 0.49 1.1E-05 45.8 7.1 108 265-406 28-141 (204)
266 PF04378 RsmJ: Ribosomal RNA s 91.9 1.8 3.8E-05 43.2 11.0 105 285-429 79-188 (245)
267 PRK13699 putative methylase; P 91.7 0.63 1.4E-05 45.6 7.6 67 313-407 2-73 (227)
268 COG2384 Predicted SAM-dependen 91.6 0.77 1.7E-05 44.9 8.0 162 264-471 18-185 (226)
269 PF09243 Rsm22: Mitochondrial 91.5 1.2 2.7E-05 44.8 9.7 45 262-306 33-79 (274)
270 KOG2352 Predicted spermine/spe 91.2 1.1 2.3E-05 48.6 9.3 102 264-404 50-159 (482)
271 PF08123 DOT1: Histone methyla 91.1 1.9 4.1E-05 41.7 10.2 58 264-322 44-112 (205)
272 PRK06035 3-hydroxyacyl-CoA deh 91.0 0.94 2E-05 45.6 8.3 39 264-303 4-44 (291)
273 PTZ00357 methyltransferase; Pr 90.9 0.62 1.3E-05 52.3 7.3 111 264-401 702-830 (1072)
274 PRK09880 L-idonate 5-dehydroge 90.9 1.7 3.7E-05 44.4 10.3 44 263-307 170-215 (343)
275 PF07279 DUF1442: Protein of u 90.8 5.5 0.00012 38.9 12.9 150 236-445 29-189 (218)
276 PRK11064 wecC UDP-N-acetyl-D-m 90.8 3.9 8.4E-05 43.7 13.2 130 264-423 4-135 (415)
277 TIGR03451 mycoS_dep_FDH mycoth 90.8 2.2 4.7E-05 43.9 11.0 96 263-404 177-274 (358)
278 PF04445 SAM_MT: Putative SAM- 90.3 0.11 2.3E-06 51.4 0.7 75 263-367 76-159 (234)
279 PLN02494 adenosylhomocysteinas 90.1 6 0.00013 43.1 13.9 40 263-303 254-295 (477)
280 KOG1253 tRNA methyltransferase 90.0 0.42 9.2E-06 51.6 5.0 106 261-406 108-216 (525)
281 COG0569 TrkA K+ transport syst 89.9 1.1 2.4E-05 43.8 7.5 70 265-369 2-76 (225)
282 TIGR03201 dearomat_had 6-hydro 89.8 3.2 6.9E-05 42.6 11.3 44 263-307 167-211 (349)
283 PRK07530 3-hydroxybutyryl-CoA 89.8 2.4 5.2E-05 42.6 10.2 39 264-303 5-45 (292)
284 PF02254 TrkA_N: TrkA-N domain 89.8 1.5 3.2E-05 37.4 7.5 95 266-409 1-99 (116)
285 cd08239 THR_DH_like L-threonin 89.7 2.5 5.5E-05 42.8 10.3 95 263-404 164-260 (339)
286 PF02826 2-Hacid_dh_C: D-isome 89.7 4.8 0.0001 37.6 11.4 116 263-433 36-153 (178)
287 PLN02256 arogenate dehydrogena 89.6 2.9 6.4E-05 42.8 10.6 106 261-426 34-142 (304)
288 cd08283 FDH_like_1 Glutathione 89.5 3.9 8.5E-05 42.7 11.8 45 263-307 185-231 (386)
289 PRK10309 galactitol-1-phosphat 89.2 3.7 7.9E-05 41.9 11.1 96 263-404 161-258 (347)
290 cd08281 liver_ADH_like1 Zinc-d 89.2 3.1 6.7E-05 43.1 10.6 95 263-404 192-288 (371)
291 COG0686 Ald Alanine dehydrogen 88.7 3.3 7.2E-05 42.7 10.0 60 263-326 168-228 (371)
292 PLN02545 3-hydroxybutyryl-CoA 88.6 1.9 4.1E-05 43.5 8.4 40 264-304 5-46 (295)
293 TIGR03366 HpnZ_proposed putati 88.5 5.7 0.00012 39.4 11.7 44 263-307 121-166 (280)
294 PRK08306 dipicolinate synthase 88.3 2.2 4.7E-05 43.5 8.6 40 263-303 152-193 (296)
295 cd08293 PTGR2 Prostaglandin re 88.3 5 0.00011 40.6 11.3 94 264-404 156-252 (345)
296 cd00315 Cyt_C5_DNA_methylase C 87.9 4.2 9.1E-05 40.9 10.3 122 265-423 2-133 (275)
297 cd08254 hydroxyacyl_CoA_DH 6-h 87.8 5.1 0.00011 40.0 11.0 96 263-405 166-262 (338)
298 PF00107 ADH_zinc_N: Zinc-bind 87.8 2.1 4.6E-05 37.0 7.1 90 272-407 1-90 (130)
299 PLN02712 arogenate dehydrogena 87.7 3.9 8.5E-05 46.5 10.9 104 263-426 52-158 (667)
300 PRK05476 S-adenosyl-L-homocyst 87.7 8.4 0.00018 41.5 12.9 41 263-303 212-253 (425)
301 TIGR00872 gnd_rel 6-phosphoglu 87.5 9.3 0.0002 38.7 12.6 93 265-410 2-96 (298)
302 cd08238 sorbose_phosphate_red 87.3 8.2 0.00018 40.7 12.6 44 263-306 176-224 (410)
303 PF03807 F420_oxidored: NADP o 87.2 6.6 0.00014 32.2 9.5 56 265-326 1-61 (96)
304 PHA01634 hypothetical protein 87.2 1.6 3.5E-05 39.4 5.9 147 234-444 9-155 (156)
305 PLN02740 Alcohol dehydrogenase 87.1 8.9 0.00019 39.9 12.6 44 263-307 199-244 (381)
306 PRK11199 tyrA bifunctional cho 87.0 3 6.4E-05 43.9 9.0 32 263-295 98-132 (374)
307 PRK06129 3-hydroxyacyl-CoA deh 86.8 3.5 7.7E-05 41.9 9.2 39 264-303 3-43 (308)
308 PRK00094 gpsA NAD(P)H-dependen 86.7 7.7 0.00017 39.2 11.6 40 264-304 2-43 (325)
309 PRK13869 plasmid-partitioning 86.7 9.7 0.00021 40.6 12.7 43 263-307 120-170 (405)
310 cd08294 leukotriene_B4_DH_like 86.4 8 0.00017 38.6 11.4 94 263-404 144-239 (329)
311 KOG3420 Predicted RNA methylas 86.4 0.7 1.5E-05 42.6 3.3 42 263-305 49-91 (185)
312 PRK07066 3-hydroxybutyryl-CoA 86.3 3.9 8.4E-05 42.3 9.1 100 263-409 7-122 (321)
313 COG0116 Predicted N6-adenine-s 86.0 4 8.6E-05 43.2 9.1 85 288-404 257-342 (381)
314 PRK12490 6-phosphogluconate de 86.0 13 0.00029 37.6 12.9 107 265-423 2-110 (299)
315 TIGR00936 ahcY adenosylhomocys 85.5 29 0.00062 37.2 15.4 41 263-303 195-236 (406)
316 PF04672 Methyltransf_19: S-ad 85.4 5.3 0.00011 40.3 9.3 121 263-409 69-193 (267)
317 PRK08655 prephenate dehydrogen 85.3 13 0.00028 40.1 12.9 102 265-426 2-107 (437)
318 PRK06249 2-dehydropantoate 2-r 85.1 3.6 7.9E-05 41.9 8.3 32 263-295 5-38 (313)
319 cd08230 glucose_DH Glucose deh 85.0 6.6 0.00014 40.3 10.2 44 263-307 173-220 (355)
320 TIGR02825 B4_12hDH leukotriene 85.0 20 0.00043 36.1 13.6 44 263-307 139-184 (325)
321 PRK06522 2-dehydropantoate 2-r 85.0 6.4 0.00014 39.3 9.9 38 265-303 2-41 (304)
322 PRK11559 garR tartronate semia 84.9 12 0.00027 37.4 12.0 39 264-303 3-43 (296)
323 PRK05708 2-dehydropantoate 2-r 84.9 1.9 4.2E-05 43.9 6.1 98 264-404 3-102 (305)
324 cd08285 NADP_ADH NADP(H)-depen 84.9 10 0.00023 38.6 11.6 96 263-404 167-264 (351)
325 PRK09599 6-phosphogluconate de 84.7 18 0.00038 36.7 13.0 108 265-424 2-111 (301)
326 PRK06545 prephenate dehydrogen 84.6 5.7 0.00012 41.4 9.6 97 265-414 2-102 (359)
327 TIGR03026 NDP-sugDHase nucleot 84.4 15 0.00032 39.0 12.8 37 265-302 2-40 (411)
328 PF01408 GFO_IDH_MocA: Oxidore 84.2 6.4 0.00014 33.5 8.2 55 265-326 2-60 (120)
329 PRK03562 glutathione-regulated 84.0 4.5 9.7E-05 45.5 9.0 53 263-323 400-454 (621)
330 KOG0821 Predicted ribosomal RN 83.7 3.2 6.9E-05 40.9 6.6 59 264-323 52-110 (326)
331 TIGR01505 tartro_sem_red 2-hyd 83.6 11 0.00025 37.7 11.0 38 265-303 1-40 (291)
332 PRK14620 NAD(P)H-dependent gly 83.6 9.4 0.0002 39.0 10.6 38 265-303 2-41 (326)
333 COG1568 Predicted methyltransf 83.4 4.5 9.7E-05 41.1 7.6 124 263-427 153-281 (354)
334 PRK08507 prephenate dehydrogen 83.3 8.9 0.00019 38.2 10.0 39 265-303 2-43 (275)
335 COG1189 Predicted rRNA methyla 83.2 6.3 0.00014 39.1 8.5 98 263-406 80-178 (245)
336 TIGR02853 spore_dpaA dipicolin 83.2 6.2 0.00013 40.1 8.9 39 263-302 151-191 (287)
337 PF05971 Methyltransf_10: Prot 83.1 1.7 3.7E-05 44.5 4.8 56 263-318 103-161 (299)
338 cd05188 MDR Medium chain reduc 83.1 15 0.00032 35.1 11.2 42 263-304 135-177 (271)
339 PLN02712 arogenate dehydrogena 82.9 12 0.00026 42.6 11.9 105 262-426 368-475 (667)
340 COG0604 Qor NADPH:quinone redu 82.9 17 0.00036 37.5 12.1 98 263-407 143-242 (326)
341 PF06460 NSP13: Coronavirus NS 82.6 3 6.4E-05 41.9 6.0 124 263-433 62-195 (299)
342 PRK12921 2-dehydropantoate 2-r 82.6 5.1 0.00011 40.1 8.0 37 265-303 2-40 (305)
343 PRK07819 3-hydroxybutyryl-CoA 82.5 7 0.00015 39.5 9.0 40 264-304 6-47 (286)
344 PRK08268 3-hydroxy-acyl-CoA de 82.4 4.9 0.00011 44.1 8.4 42 263-305 7-50 (507)
345 COG2961 ComJ Protein involved 82.4 14 0.00031 37.0 10.6 140 285-468 110-264 (279)
346 PF14314 Methyltrans_Mon: Viru 82.3 3.7 7.9E-05 46.5 7.3 72 356-433 412-484 (675)
347 COG3897 Predicted methyltransf 82.0 4.3 9.4E-05 39.2 6.7 102 262-410 79-181 (218)
348 TIGR01470 cysG_Nterm siroheme 81.9 19 0.00041 34.7 11.3 50 263-320 9-62 (205)
349 PLN03154 putative allyl alcoho 81.9 16 0.00034 37.6 11.5 45 263-307 159-205 (348)
350 TIGR01202 bchC 2-desacetyl-2-h 81.9 7.6 0.00016 39.2 9.0 42 263-304 145-188 (308)
351 PF02153 PDH: Prephenate dehyd 81.8 7.5 0.00016 38.6 8.8 100 276-433 1-105 (258)
352 PRK09496 trkA potassium transp 81.6 7.9 0.00017 41.1 9.5 54 263-322 231-286 (453)
353 cd08286 FDH_like_ADH2 formalde 81.4 21 0.00046 36.1 12.2 96 263-404 167-264 (345)
354 PTZ00142 6-phosphogluconate de 81.3 16 0.00035 39.8 11.7 101 265-411 3-105 (470)
355 PF06564 YhjQ: YhjQ protein; 81.2 18 0.00038 36.1 11.0 70 357-429 115-195 (243)
356 cd08295 double_bond_reductase_ 81.1 22 0.00047 36.0 12.1 45 263-307 152-198 (338)
357 cd08237 ribitol-5-phosphate_DH 80.8 10 0.00022 38.8 9.7 41 263-303 164-207 (341)
358 PF02737 3HCDH_N: 3-hydroxyacy 80.7 3.4 7.4E-05 38.9 5.6 110 265-410 1-118 (180)
359 PF00072 Response_reg: Respons 80.5 14 0.0003 30.4 8.7 79 288-407 1-79 (112)
360 cd05213 NAD_bind_Glutamyl_tRNA 80.4 23 0.0005 36.2 12.0 42 263-304 178-222 (311)
361 TIGR02279 PaaC-3OHAcCoADH 3-hy 80.4 5.9 0.00013 43.5 8.1 41 263-304 5-47 (503)
362 PRK06719 precorrin-2 dehydroge 80.3 19 0.00042 33.1 10.3 34 263-299 13-48 (157)
363 PRK14806 bifunctional cyclohex 79.9 10 0.00022 43.3 10.2 106 264-426 4-112 (735)
364 PRK05562 precorrin-2 dehydroge 79.8 13 0.00028 36.6 9.4 48 263-318 25-76 (223)
365 TIGR01007 eps_fam capsular exo 79.4 38 0.00083 31.8 12.5 59 239-307 2-67 (204)
366 COG4121 Uncharacterized conser 79.4 1.8 3.9E-05 43.3 3.4 61 311-404 146-206 (252)
367 cd08301 alcohol_DH_plants Plan 79.2 35 0.00076 35.1 13.1 44 263-307 188-233 (369)
368 cd05288 PGDH Prostaglandin deh 79.2 25 0.00054 35.1 11.7 45 263-307 146-192 (329)
369 PRK15461 NADH-dependent gamma- 79.1 13 0.00029 37.6 9.7 38 265-303 3-42 (296)
370 PRK03659 glutathione-regulated 79.0 8.5 0.00018 43.1 8.9 53 263-323 400-454 (601)
371 PTZ00075 Adenosylhomocysteinas 78.7 37 0.00081 37.1 13.3 40 263-303 254-295 (476)
372 PF10237 N6-adenineMlase: Prob 78.7 11 0.00024 35.2 8.2 91 263-406 26-123 (162)
373 PRK12439 NAD(P)H-dependent gly 78.7 15 0.00033 38.0 10.2 39 263-303 7-47 (341)
374 TIGR00873 gnd 6-phosphoglucona 78.6 30 0.00066 37.7 12.8 99 265-410 1-101 (467)
375 PLN02819 lysine-ketoglutarate 78.6 32 0.0007 41.2 13.8 58 263-323 569-642 (1042)
376 PF01210 NAD_Gly3P_dh_N: NAD-d 78.5 9 0.0002 35.0 7.6 114 265-427 1-124 (157)
377 TIGR02822 adh_fam_2 zinc-bindi 78.3 20 0.00043 36.5 10.8 44 263-307 166-210 (329)
378 PRK10669 putative cation:proto 78.2 5.3 0.00011 44.2 7.0 52 264-323 418-471 (558)
379 KOG2187 tRNA uracil-5-methyltr 78.1 7.8 0.00017 42.4 7.9 127 263-429 384-511 (534)
380 PRK07531 bifunctional 3-hydrox 77.4 19 0.00042 39.3 10.9 37 264-301 5-43 (495)
381 KOG2198 tRNA cytosine-5-methyl 77.4 27 0.00058 36.9 11.3 126 263-411 156-301 (375)
382 PF02558 ApbA: Ketopantoate re 77.4 3.1 6.7E-05 37.2 4.0 95 266-404 1-99 (151)
383 PLN02827 Alcohol dehydrogenase 76.7 24 0.00053 36.8 11.1 44 263-307 194-239 (378)
384 cd08233 butanediol_DH_like (2R 76.3 28 0.0006 35.4 11.2 96 263-404 173-270 (351)
385 TIGR02818 adh_III_F_hyde S-(hy 76.3 32 0.00069 35.6 11.8 44 263-307 186-231 (368)
386 PRK13705 plasmid-partitioning 76.1 48 0.001 35.2 13.2 37 261-297 103-148 (388)
387 PF07091 FmrO: Ribosomal RNA m 75.9 4.2 9.1E-05 40.6 4.8 60 262-322 105-165 (251)
388 KOG3115 Methyltransferase-like 75.8 5.7 0.00012 38.7 5.5 113 263-404 61-181 (249)
389 cd08300 alcohol_DH_class_III c 75.4 36 0.00078 35.1 11.9 44 263-307 187-232 (368)
390 PF03141 Methyltransf_29: Puta 75.2 2.3 4.9E-05 46.3 2.9 41 236-283 98-138 (506)
391 PRK12475 thiamine/molybdopteri 75.2 10 0.00022 39.5 7.7 32 263-295 24-58 (338)
392 cd08261 Zn_ADH7 Alcohol dehydr 75.2 29 0.00064 34.9 11.0 96 263-404 160-256 (337)
393 PF06962 rRNA_methylase: Putat 74.8 9.7 0.00021 34.8 6.5 106 287-424 1-113 (140)
394 cd05279 Zn_ADH1 Liver alcohol 74.7 34 0.00073 35.3 11.5 95 263-404 184-283 (365)
395 PRK09422 ethanol-active dehydr 74.5 32 0.0007 34.5 11.1 44 263-307 163-208 (338)
396 cd08277 liver_alcohol_DH_like 74.4 40 0.00086 34.7 11.9 44 263-307 185-230 (365)
397 PLN02353 probable UDP-glucose 74.2 56 0.0012 35.7 13.4 41 264-304 2-45 (473)
398 PRK12480 D-lactate dehydrogena 74.2 34 0.00074 35.4 11.3 34 263-297 146-181 (330)
399 TIGR03376 glycerol3P_DH glycer 74.1 27 0.00058 36.5 10.4 114 265-426 1-138 (342)
400 COG1893 ApbA Ketopantoate redu 73.9 11 0.00023 38.7 7.4 96 265-404 2-99 (307)
401 TIGR02356 adenyl_thiF thiazole 73.6 15 0.00033 35.1 8.0 32 263-295 21-55 (202)
402 cd08296 CAD_like Cinnamyl alco 73.5 35 0.00076 34.4 11.1 44 263-307 164-208 (333)
403 PRK08229 2-dehydropantoate 2-r 73.5 11 0.00024 38.5 7.5 33 264-297 3-37 (341)
404 PRK09496 trkA potassium transp 73.4 32 0.00068 36.5 11.2 51 265-322 2-54 (453)
405 COG1748 LYS9 Saccharopine dehy 73.4 39 0.00085 36.0 11.5 56 264-323 2-59 (389)
406 PF02636 Methyltransf_28: Puta 73.1 3.7 8E-05 40.5 3.7 45 263-307 19-72 (252)
407 PLN02688 pyrroline-5-carboxyla 73.0 41 0.00089 33.0 11.2 39 265-303 2-46 (266)
408 cd05278 FDH_like Formaldehyde 72.9 40 0.00088 33.9 11.4 96 263-404 168-265 (347)
409 cd05286 QOR2 Quinone oxidoredu 72.6 36 0.00078 33.0 10.6 44 263-307 137-182 (320)
410 PLN02586 probable cinnamyl alc 72.1 41 0.00089 34.8 11.4 44 263-307 184-229 (360)
411 PRK12491 pyrroline-5-carboxyla 71.6 32 0.0007 34.5 10.1 43 264-306 3-50 (272)
412 PF05148 Methyltransf_8: Hypot 71.5 3.5 7.6E-05 40.2 3.0 103 263-424 73-176 (219)
413 cd08265 Zn_ADH3 Alcohol dehydr 71.0 43 0.00094 34.8 11.3 44 263-307 204-249 (384)
414 KOG1099 SAM-dependent methyltr 71.0 29 0.00063 34.6 9.1 142 263-445 42-204 (294)
415 smart00829 PKS_ER Enoylreducta 70.9 58 0.0013 31.0 11.5 44 263-307 105-150 (288)
416 PRK13243 glyoxylate reductase; 70.6 29 0.00064 35.9 9.8 33 263-296 150-184 (333)
417 TIGR01627 A_thal_3515 uncharac 70.5 19 0.00041 35.2 7.6 126 262-394 39-172 (225)
418 cd05285 sorbitol_DH Sorbitol d 70.5 41 0.00089 34.0 10.8 43 263-306 163-207 (343)
419 cd08297 CAD3 Cinnamyl alcohol 70.2 48 0.001 33.4 11.2 97 263-405 166-264 (341)
420 cd08231 MDR_TM0436_like Hypoth 70.1 52 0.0011 33.6 11.5 44 263-307 178-223 (361)
421 cd08278 benzyl_alcohol_DH Benz 69.6 50 0.0011 34.0 11.3 44 263-307 187-232 (365)
422 KOG2798 Putative trehalase [Ca 69.1 5.5 0.00012 41.1 3.9 38 262-300 150-187 (369)
423 COG5379 BtaA S-adenosylmethion 69.0 8.2 0.00018 39.6 5.0 40 262-302 63-102 (414)
424 cd01075 NAD_bind_Leu_Phe_Val_D 68.9 13 0.00027 35.7 6.2 43 263-306 28-72 (200)
425 PRK08605 D-lactate dehydrogena 68.8 45 0.00098 34.5 10.7 34 263-296 146-181 (332)
426 PTZ00354 alcohol dehydrogenase 68.8 61 0.0013 32.1 11.5 44 263-307 141-186 (334)
427 TIGR01035 hemA glutamyl-tRNA r 68.4 62 0.0013 34.6 12.0 40 263-303 180-223 (417)
428 PLN02350 phosphogluconate dehy 68.3 54 0.0012 36.0 11.6 117 263-424 6-124 (493)
429 TIGR01692 HIBADH 3-hydroxyisob 68.2 46 0.001 33.4 10.4 101 268-423 1-106 (288)
430 PF03269 DUF268: Caenorhabditi 67.8 48 0.001 31.3 9.4 108 263-407 2-112 (177)
431 cd08291 ETR_like_1 2-enoyl thi 67.8 44 0.00095 33.5 10.3 44 263-307 143-189 (324)
432 KOG1501 Arginine N-methyltrans 67.7 9.3 0.0002 41.2 5.3 43 263-305 67-109 (636)
433 PRK10637 cysG siroheme synthas 67.6 55 0.0012 35.4 11.5 39 263-302 12-54 (457)
434 TIGR02437 FadB fatty oxidation 67.6 9.9 0.00021 43.6 6.0 113 263-411 313-433 (714)
435 PRK06436 glycerate dehydrogena 67.5 51 0.0011 33.8 10.7 31 263-294 122-154 (303)
436 PRK11880 pyrroline-5-carboxyla 67.2 55 0.0012 32.2 10.6 43 264-306 3-49 (267)
437 PF01494 FAD_binding_3: FAD bi 67.1 7.5 0.00016 38.8 4.5 32 265-296 3-35 (356)
438 cd00401 AdoHcyase S-adenosyl-L 67.1 11 0.00025 40.3 6.0 44 263-307 202-246 (413)
439 cd08240 6_hydroxyhexanoate_dh_ 67.0 59 0.0013 32.9 11.1 44 263-307 176-221 (350)
440 KOG0023 Alcohol dehydrogenase, 66.1 46 0.001 34.7 9.8 46 262-307 181-227 (360)
441 PRK07680 late competence prote 66.1 51 0.0011 32.7 10.2 40 265-304 2-46 (273)
442 PRK07634 pyrroline-5-carboxyla 66.0 64 0.0014 31.1 10.7 44 263-306 4-53 (245)
443 COG0673 MviM Predicted dehydro 65.9 41 0.0009 33.9 9.7 56 263-324 3-63 (342)
444 KOG1562 Spermidine synthase [A 65.9 4.2 9.1E-05 41.6 2.3 81 234-329 159-247 (337)
445 cd01080 NAD_bind_m-THF_DH_Cycl 65.8 34 0.00074 32.0 8.3 31 263-294 44-77 (168)
446 PLN02702 L-idonate 5-dehydroge 65.8 47 0.001 34.0 10.2 44 263-307 182-227 (364)
447 COG5459 Predicted rRNA methyla 65.8 4.1 8.9E-05 42.7 2.2 107 262-406 113-225 (484)
448 COG1062 AdhC Zn-dependent alco 65.5 76 0.0016 33.4 11.3 102 263-411 186-291 (366)
449 cd01065 NAD_bind_Shikimate_DH 65.5 25 0.00054 31.3 7.2 44 263-306 19-64 (155)
450 cd08287 FDH_like_ADH3 formalde 65.4 63 0.0014 32.5 10.9 96 263-404 169-266 (345)
451 PRK00045 hemA glutamyl-tRNA re 65.3 68 0.0015 34.3 11.6 42 263-306 182-227 (423)
452 COG2084 MmsB 3-hydroxyisobutyr 65.1 61 0.0013 33.1 10.5 39 265-304 2-43 (286)
453 PRK07688 thiamine/molybdopteri 65.1 29 0.00063 36.1 8.5 32 263-295 24-58 (339)
454 cd08299 alcohol_DH_class_I_II_ 65.1 1.4E+02 0.003 31.0 13.6 44 263-307 191-236 (373)
455 PRK11154 fadJ multifunctional 65.1 23 0.00049 40.6 8.3 43 263-305 309-353 (708)
456 KOG4058 Uncharacterized conser 64.8 7.9 0.00017 35.9 3.6 64 233-304 47-114 (199)
457 PLN02928 oxidoreductase family 64.8 39 0.00085 35.2 9.4 31 263-294 159-191 (347)
458 cd08232 idonate-5-DH L-idonate 64.8 47 0.001 33.4 9.8 42 263-304 166-209 (339)
459 cd08260 Zn_ADH6 Alcohol dehydr 64.7 74 0.0016 32.1 11.3 95 263-404 166-262 (345)
460 TIGR02819 fdhA_non_GSH formald 64.5 63 0.0014 34.0 11.0 44 263-307 186-231 (393)
461 PRK06849 hypothetical protein; 64.3 25 0.00053 36.9 7.9 36 262-298 3-41 (389)
462 cd05195 enoyl_red enoyl reduct 64.3 93 0.002 29.5 11.4 44 263-306 109-154 (293)
463 PF00145 DNA_methylase: C-5 cy 64.2 48 0.001 33.0 9.7 122 265-423 2-132 (335)
464 COG4565 CitB Response regulato 64.1 70 0.0015 31.4 10.1 78 287-408 2-84 (224)
465 cd08263 Zn_ADH10 Alcohol dehyd 64.0 65 0.0014 33.0 10.9 44 263-307 188-233 (367)
466 PRK08163 salicylate hydroxylas 64.0 8 0.00017 40.1 4.1 33 263-296 4-38 (396)
467 PRK14619 NAD(P)H-dependent gly 63.8 42 0.00091 34.1 9.2 32 263-295 4-37 (308)
468 cd08244 MDR_enoyl_red Possible 63.6 83 0.0018 31.0 11.3 44 263-307 143-188 (324)
469 COG0677 WecC UDP-N-acetyl-D-ma 63.6 1.6E+02 0.0035 31.7 13.4 121 264-409 10-131 (436)
470 TIGR03029 EpsG chain length de 63.5 1.6E+02 0.0034 29.1 13.7 45 263-308 103-154 (274)
471 PF03435 Saccharop_dh: Sacchar 63.5 30 0.00064 36.2 8.3 130 266-432 1-151 (386)
472 PRK06847 hypothetical protein; 63.4 8.5 0.00018 39.6 4.1 34 263-296 4-38 (375)
473 PRK10867 signal recognition pa 63.0 50 0.0011 35.7 10.0 36 263-298 100-142 (433)
474 PRK07236 hypothetical protein; 62.9 9.4 0.0002 39.7 4.4 33 263-296 6-40 (386)
475 COG1250 FadB 3-hydroxyacyl-CoA 62.9 22 0.00047 36.7 6.9 116 263-412 3-124 (307)
476 PRK11730 fadB multifunctional 62.8 25 0.00054 40.3 8.1 111 264-410 314-432 (715)
477 PRK07608 ubiquinone biosynthes 62.2 16 0.00036 37.6 6.0 58 263-326 5-64 (388)
478 PRK05225 ketol-acid reductoiso 62.1 46 0.001 36.3 9.3 60 359-448 97-157 (487)
479 PLN02514 cinnamyl-alcohol dehy 62.1 1.1E+02 0.0023 31.6 12.0 45 263-307 181-226 (357)
480 PF08351 DUF1726: Domain of un 62.0 11 0.00023 31.9 3.7 40 356-408 8-47 (92)
481 TIGR02441 fa_ox_alpha_mit fatt 62.0 18 0.00039 41.7 6.7 42 263-305 335-378 (737)
482 KOG2651 rRNA adenine N-6-methy 62.0 12 0.00027 39.6 4.9 41 263-303 154-194 (476)
483 PF01488 Shikimate_DH: Shikima 61.8 59 0.0013 28.8 8.8 52 263-319 12-67 (135)
484 PRK05703 flhF flagellar biosyn 61.8 66 0.0014 34.6 10.6 34 263-296 221-262 (424)
485 PRK05600 thiamine biosynthesis 61.6 38 0.00082 35.7 8.6 32 263-295 41-75 (370)
486 PF11312 DUF3115: Protein of u 61.4 9.1 0.0002 39.5 3.8 21 384-404 220-240 (315)
487 PRK07045 putative monooxygenas 61.3 9.3 0.0002 39.7 4.0 34 263-296 5-39 (388)
488 PRK13403 ketol-acid reductoiso 61.3 95 0.0021 32.5 11.2 114 263-448 16-132 (335)
489 cd08289 MDR_yhfp_like Yhfp put 61.2 69 0.0015 31.8 10.2 44 263-307 147-192 (326)
490 PTZ00431 pyrroline carboxylate 61.0 41 0.00089 33.3 8.4 33 264-296 4-41 (260)
491 PRK06475 salicylate hydroxylas 60.8 9.9 0.00022 39.8 4.1 32 264-296 3-36 (400)
492 PRK05479 ketol-acid reductoiso 60.7 52 0.0011 34.3 9.3 85 263-403 17-105 (330)
493 PRK10083 putative oxidoreducta 60.7 75 0.0016 31.9 10.5 44 263-307 161-207 (339)
494 KOG0069 Glyoxylate/hydroxypyru 60.6 37 0.00081 35.4 8.2 43 263-306 162-206 (336)
495 cd05281 TDH Threonine dehydrog 60.6 95 0.0021 31.3 11.2 44 263-307 164-209 (341)
496 cd08292 ETR_like_2 2-enoyl thi 60.4 82 0.0018 31.1 10.6 44 263-307 140-185 (324)
497 COG0111 SerA Phosphoglycerate 60.4 59 0.0013 33.7 9.6 31 263-293 142-173 (324)
498 PRK15469 ghrA bifunctional gly 60.2 50 0.0011 34.0 9.0 32 263-295 136-169 (312)
499 cd08252 AL_MDR Arginate lyase 60.2 86 0.0019 31.2 10.7 44 263-307 150-196 (336)
500 KOG1269 SAM-dependent methyltr 60.2 9.1 0.0002 40.4 3.7 104 264-408 112-217 (364)
No 1
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=384.20 Aligned_cols=315 Identities=31% Similarity=0.450 Sum_probs=269.4
Q ss_pred EeeCCcCcceeecChhhhHHHHhhccCCcEEEEEecCCCCCCCCCCCccCCC--chhhHHhhhhcccchhhhcccccccc
Q 038592 62 FVPKHREHDWIFSTESGHLQLLLSCHQFSRLILIGDEPTTDDSPDLPITTKH--DSFDQKSLEDSVKPLVIALSRKFCFD 139 (478)
Q Consensus 62 iVP~Gre~eWlfst~eG~~ql~~~s~~~~RLi~V~l~~~~~~~~~~~~~y~~--~~~v~~el~~~~~~~v~~L~P~~~~~ 139 (478)
+||+||+++|+|+++.|++++. .+++..||++|++|++ + .|.. ++.++++++ +.+..+.|++.+.
T Consensus 165 ~vp~~r~~e~~~~~p~G~~~~~-~~s~~~~l~~v~l~~g--q------~~~~~~~~~~~~~~s----~~~~~l~~~g~~~ 231 (482)
T KOG2352|consen 165 VVPQGRKPEWLFGSPGGSKQMN-VSSSGERLAIVALHRG--Q------QYSTPQEDEVQDPLS----PFRRQLDPKGEPT 231 (482)
T ss_pred eccCCCCeeeeecCccchhhhh-hhccCcceEEEEeccC--c------cccchHHhhhccccc----cceeecccccCCh
Confidence 4999999999999999999999 7779999999999997 4 6765 778888888 9999999999864
Q ss_pred cCCccceeeeecCCcceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccc
Q 038592 140 KNGIYNVPLLSYEDNVVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDS 219 (478)
Q Consensus 140 ~~~~~~iP~ls~~~~i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~ 219 (478)
. .+.|+++.|+++.+ |++.+..|.+++||++.-
T Consensus 232 ~---~q~~~ls~g~d~~~----------------------------------~~l~~~~n~nv~q~~~k~---------- 264 (482)
T KOG2352|consen 232 Q---QQREILSIGEDVGV----------------------------------RRLPPCGNMNVVQSEAKK---------- 264 (482)
T ss_pred h---hhhccccccccccc----------------------------------ccccCCCCcceecCchhc----------
Confidence 3 68899887766443 455555578999998510
Q ss_pred cccCCccccccCCcccchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHH
Q 038592 220 VKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVL 298 (478)
Q Consensus 220 ~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl 298 (478)
+ +.-+|+++||++|+++++|+..... ...+.+.++||+|+|||.|++||+.++ ..++++||+||+|+
T Consensus 265 ------~----r~~~l~s~~h~~m~~g~aL~~n~~~--~~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l 332 (482)
T KOG2352|consen 265 ------D----RKPELASQYHQMMIGGLALIMNRPP--QKLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEML 332 (482)
T ss_pred ------c----cCcccCcchhhhhhccceeccccCc--hhccccCcEEEEecCCCccccceeeecCccceeEEEEChhHh
Confidence 1 1228999999999999999865432 233567899999999999999999997 48999999999999
Q ss_pred HHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC
Q 038592 299 RVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA 378 (478)
Q Consensus 299 ~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~ 378 (478)
++|++||++..+.|.+||+.||++|+++.++. ...+..||+|++|+|++| +.||+|
T Consensus 333 ~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~-----------------------~~~~~~~dvl~~dvds~d-~~g~~~ 388 (482)
T KOG2352|consen 333 EVATQYFGFMQSDRNKVHIADGLDFLQRTAKS-----------------------QQEDICPDVLMVDVDSKD-SHGMQC 388 (482)
T ss_pred hccHhhhchhhhhhhhhhHhhchHHHHHHhhc-----------------------cccccCCcEEEEECCCCC-cccCcC
Confidence 99999999998779999999999999997642 125778999999999999 889999
Q ss_pred CCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeecccceEEEEEEcCCCCCCcchhhhh
Q 038592 379 PPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIATGLSIVSSGSDCENA 458 (478)
Q Consensus 379 Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~~~~~~~~~~~~~~ 458 (478)
||..|+...||+.++..|.|.|+|++|+++|+..+.+++...|+.+|+++|.+++++++|.|++|+..|......
T Consensus 389 pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~vf~~l~~~~~~~~~N~il~~~~~~~~~~~~----- 463 (482)
T KOG2352|consen 389 PPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKVFPQLYHHQLEEDVNEILIGQMPPKQKPGN----- 463 (482)
T ss_pred CchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhhhHHHhhhhccCCCceeEEeecChhcCchh-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765544
Q ss_pred hhHHHHHHhcccccccccCC
Q 038592 459 FGKKLRLLISGEYMDSIRKI 478 (478)
Q Consensus 459 ~~~~l~~~i~~~~~~~i~~~ 478 (478)
..++.+-..|.|.|.|-+|
T Consensus 464 -~~~~~~~~~~~~~~~~~~~ 482 (482)
T KOG2352|consen 464 -LENLVRKMQGGYDDAINAI 482 (482)
T ss_pred -hhhhhhhhccCcccccccC
Confidence 3444444667788887654
No 2
>PRK04457 spermidine synthase; Provisional
Probab=99.97 E-value=4.3e-29 Score=248.16 Aligned_cols=189 Identities=26% Similarity=0.371 Sum_probs=162.3
Q ss_pred eeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcccchhcHHHHHHHHhhhcccccccccCCCCCeEEEE
Q 038592 190 FRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCV 269 (478)
Q Consensus 190 ~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvI 269 (478)
.+|.|.|.+ +.+||.+.+. ||..+.++|+++|+.++.+.+ .+++||+|
T Consensus 26 ~~R~L~f~~--~~~qs~~~~~--------------------~P~~l~~~y~~~m~~~l~~~~----------~~~~vL~I 73 (262)
T PRK04457 26 GVRSLHLGS--DTVQSSMRID--------------------DPSELELAYTRAMMGFLLFNP----------RPQHILQI 73 (262)
T ss_pred CEEEEEECC--CcceeeeecC--------------------CcccccCHHHHHHHHHHhcCC----------CCCEEEEE
Confidence 489999964 5899987752 577889999999998776543 26799999
Q ss_pred eCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCC
Q 038592 270 GVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDG 347 (478)
Q Consensus 270 GlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~ 347 (478)
|+|+|+++++++++. +.+|++||+||+|+++|+++|+... ++|++++++||.+|+.+
T Consensus 74 G~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~--------------------- 132 (262)
T PRK04457 74 GLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV--------------------- 132 (262)
T ss_pred CCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---------------------
Confidence 999999999998875 6899999999999999999999864 58999999999999865
Q ss_pred CccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCc
Q 038592 348 NFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQE 427 (478)
Q Consensus 348 ~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~ 427 (478)
...+||+|++|.+++.. +|..+.+.+|++.++++|+|||++++|+++++.. ...++++++++|++
T Consensus 133 --------~~~~yD~I~~D~~~~~~------~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~-~~~~l~~l~~~F~~ 197 (262)
T PRK04457 133 --------HRHSTDVILVDGFDGEG------IIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKR-YDRYLERLESSFEG 197 (262)
T ss_pred --------CCCCCCEEEEeCCCCCC------CccccCcHHHHHHHHHhcCCCcEEEEEcCCCchh-HHHHHHHHHHhcCC
Confidence 34579999999876542 4678899999999999999999999999988654 56789999999985
Q ss_pred -cEEEeecccceEEEEEEcC
Q 038592 428 -LYEIDVGNEENFVLIATGL 446 (478)
Q Consensus 428 -v~~~~v~~~~N~Vl~a~~~ 446 (478)
++.++..+.+|.|++|++.
T Consensus 198 ~~~~~~~~~~~N~v~~a~~~ 217 (262)
T PRK04457 198 RVLELPAESHGNVAVFAFKS 217 (262)
T ss_pred cEEEEecCCCccEEEEEECC
Confidence 7888888889999999874
No 3
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.97 E-value=3.8e-29 Score=246.40 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=166.7
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
.++.+++++.+|+||...++|+ ..++++++++ +.+|+. + + |
T Consensus 18 ~~v~~vl~~~~s~yQ~i~i~~~------------~~~G~~l~ld--g~~q~~-----e------------~-----d--- 58 (246)
T PF01564_consen 18 YRVEEVLYEEKSPYQHIEIFES------------SPFGRILVLD--GDVQLS-----E------------R-----D--- 58 (246)
T ss_dssp EEEEEEEEEEEESSSEEEEEEE------------TTTEEEEEET--TEEEEE-----T------------T-----T---
T ss_pred EEEEEEEEccCCCCCcEEEEEe------------cCcCcEEEEC--CeEEEE-----E------------e-----c---
Confidence 6778999999999999999983 1467887774 788974 1 1 1
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D 309 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~ 309 (478)
...||++|++..++.++ +|++|||||+|+|++++.+.+++. .+|++|||||.|+++|++||+.. .
T Consensus 59 -e~~y~e~l~h~~~~~~~---------~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~ 128 (246)
T PF01564_consen 59 -EFIYHEMLVHPPLLLHP---------NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLD 128 (246)
T ss_dssp -HHHHHHHHHHHHHHHSS---------ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGG
T ss_pred -hHHHHHHHhhhHhhcCC---------CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccC
Confidence 68899999998777664 389999999999999999999974 69999999999999999999752 5
Q ss_pred CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCC-ceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592 310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDN-KFDVIMVDLDSGDARNGTSAPPVEFVRKDV 388 (478)
Q Consensus 310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef 388 (478)
|+|++++++||+.||++ ... +||+||+|++++.. |+..|++.+|
T Consensus 129 d~r~~i~~~Dg~~~l~~-----------------------------~~~~~yDvIi~D~~dp~~------~~~~l~t~ef 173 (246)
T PF01564_consen 129 DPRVRIIIGDGRKFLKE-----------------------------TQEEKYDVIIVDLTDPDG------PAPNLFTREF 173 (246)
T ss_dssp STTEEEEESTHHHHHHT-----------------------------SSST-EEEEEEESSSTTS------CGGGGSSHHH
T ss_pred CCceEEEEhhhHHHHHh-----------------------------ccCCcccEEEEeCCCCCC------CcccccCHHH
Confidence 79999999999999986 334 89999999987442 4555999999
Q ss_pred HHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEE--Eeecccc-e--EEEEEEcCC
Q 038592 389 LLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYE--IDVGNEE-N--FVLIATGLS 447 (478)
Q Consensus 389 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~--~~v~~~~-N--~Vl~a~~~~ 447 (478)
++.++++|+|+|++++|..++ +....+.+.++++++|+.+.. ..++... + ...+|++..
T Consensus 174 ~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~~~~s~~~ 239 (246)
T PF01564_consen 174 YQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSFASASKDI 239 (246)
T ss_dssp HHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEEEEEESST
T ss_pred HHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeEEEEeCCC
Confidence 999999999999999998654 566788899999999997654 4454422 3 334455543
No 4
>PLN02823 spermine synthase
Probab=99.96 E-value=2.6e-28 Score=250.03 Aligned_cols=212 Identities=21% Similarity=0.244 Sum_probs=170.7
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
+.+.+++++.+|+||...|+++ . .+++++|++ +.+||...
T Consensus 45 ~~~~~vl~~~~S~yQ~I~V~~~-----~-------~~g~~L~lD--g~~qs~~~-------------------------- 84 (336)
T PLN02823 45 YAVNSVLHTGTSEFQDIALVDT-----K-------PFGKVLIID--GKMQSAEA-------------------------- 84 (336)
T ss_pred EEeccEEEeccCCCeEEEEEEC-----C-------CCceEEEEC--Cccccccc--------------------------
Confidence 5677899999999998888873 1 357888884 78997410
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D 309 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~ 309 (478)
..+.||++|++..++.++ .|++|||||+|+|++++++.++.+ .+|++|||||+|+++|++||+.. .
T Consensus 85 de~~YhE~l~h~~l~~~~---------~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~ 155 (336)
T PLN02823 85 DEFVYHESLVHPALLHHP---------NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFC 155 (336)
T ss_pred hHHHHHHHHHhHHHhhCC---------CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccccc
Confidence 156799999988766543 378999999999999999998864 69999999999999999999864 4
Q ss_pred CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592 310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL 389 (478)
Q Consensus 310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl 389 (478)
++|++++++||++||++ ...+||+||+|++++.. .+||..|++.+||
T Consensus 156 dprv~v~~~Da~~~L~~-----------------------------~~~~yDvIi~D~~dp~~----~~~~~~Lyt~eF~ 202 (336)
T PLN02823 156 DKRLELIINDARAELEK-----------------------------RDEKFDVIIGDLADPVE----GGPCYQLYTKSFY 202 (336)
T ss_pred CCceEEEEChhHHHHhh-----------------------------CCCCccEEEecCCCccc----cCcchhhccHHHH
Confidence 79999999999999965 45679999999865321 1357789999999
Q ss_pred H-HHHHccCcCcEEEEEeCCC----CchHHHHHHHHHHHhcCccEEEee--c--ccceEEEEEEcCCC
Q 038592 390 L-AARLILSDFGIFVMNVIPP----NRSFYDMLIQEFRDVFQELYEIDV--G--NEENFVLIATGLSI 448 (478)
Q Consensus 390 ~-~~~~~L~~~Gilv~N~~~~----~~~~~~~v~~~l~~vF~~v~~~~v--~--~~~N~Vl~a~~~~~ 448 (478)
+ .++++|+|+|++++|..+. +.+....++++|+++|++++.+.. + .+....++|++.|.
T Consensus 203 ~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vPsf~~~w~f~~aS~~~~ 270 (336)
T PLN02823 203 ERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVPSFADTWGWVMASDHPF 270 (336)
T ss_pred HHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecCCCCCceEEEEEeCCcc
Confidence 9 9999999999999998764 356678899999999999866543 2 22244577888764
No 5
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.96 E-value=1.6e-27 Score=238.33 Aligned_cols=213 Identities=20% Similarity=0.264 Sum_probs=168.8
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
..+.+++++++|.++...+++. ..++++..++ +.+|+.-+
T Consensus 18 ~~v~~~l~~~ks~~q~i~i~~~------------~~~g~~l~ld--g~~q~~e~-------------------------- 57 (282)
T COG0421 18 FRVERVLYEEKSEYQDIEIFES------------EDFGKVLVLD--GVVQLTER-------------------------- 57 (282)
T ss_pred eEeeeeeeeccCCceEEEEEec------------cccceEEEec--Chhhhccc--------------------------
Confidence 4578899999999999999971 1356676664 78897511
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCC----
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLED---- 309 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~---- 309 (478)
..+.||+++++..+++++ +|++|||||+|.|++++++.++.+ .++++|||||.|+++||+||+...
T Consensus 58 de~~yhEml~h~~~~ah~---------~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~ 128 (282)
T COG0421 58 DEFIYHEMLAHVPLLAHP---------NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD 128 (282)
T ss_pred hhHHHHHHHHhchhhhCC---------CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC
Confidence 268999999999887765 368999999999999999999985 699999999999999999998765
Q ss_pred CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592 310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL 389 (478)
Q Consensus 310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl 389 (478)
|||++++++||.+|+++ ...+||+||+|.+++. .|.+.|++++|+
T Consensus 129 dpRv~i~i~Dg~~~v~~-----------------------------~~~~fDvIi~D~tdp~------gp~~~Lft~eFy 173 (282)
T COG0421 129 DPRVEIIIDDGVEFLRD-----------------------------CEEKFDVIIVDSTDPV------GPAEALFTEEFY 173 (282)
T ss_pred CCceEEEeccHHHHHHh-----------------------------CCCcCCEEEEcCCCCC------CcccccCCHHHH
Confidence 89999999999999987 3448999999887652 267889999999
Q ss_pred HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCcc--EEEeecc--cc-eEEEEEE-cCCCCCC
Q 038592 390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQEL--YEIDVGN--EE-NFVLIAT-GLSIVSS 451 (478)
Q Consensus 390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v--~~~~v~~--~~-N~Vl~a~-~~~~~~~ 451 (478)
+.|+++|+++|+++.|..++ ..+....+.+.++++|+.+ |...+.. .+ -.+.+++ +.+....
T Consensus 174 ~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s~~~~~~~~ 243 (282)
T COG0421 174 EGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVASFNKAHPLK 243 (282)
T ss_pred HHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEeecCCCCccc
Confidence 99999999999999996554 2345677899999999953 4444432 22 1344555 4444433
No 6
>PLN02366 spermidine synthase
Probab=99.95 E-value=4.4e-26 Score=231.23 Aligned_cols=209 Identities=18% Similarity=0.222 Sum_probs=164.4
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
+++.+++++.+|+||...|+|.- .+.++++++ +.+|+.- .|
T Consensus 33 ~~v~~~l~~~~s~yQ~i~v~~~~------------~~g~~L~lD--g~~q~~~----------------------~d--- 73 (308)
T PLN02366 33 LKVEKVLFQGKSDFQDVLVFESA------------TYGKVLVLD--GVIQLTE----------------------RD--- 73 (308)
T ss_pred EEEeeEEEeccCCCeeEEEEEcC------------CCceEEEEC--CEeeecC----------------------cc---
Confidence 67889999999999999999831 244555664 7889740 12
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC----CC
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL----ED 309 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~----~~ 309 (478)
++.||++|++..++.++ ++++||+||+|+|++++.+.++++ .+|++||||++|+++|++||.. ..
T Consensus 74 -e~~Y~e~l~h~~l~~~~---------~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~ 143 (308)
T PLN02366 74 -ECAYQEMITHLPLCSIP---------NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFD 143 (308)
T ss_pred -HHHHHHHHHHHHHhhCC---------CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccC
Confidence 68899988886554432 378999999999999999999875 6999999999999999999963 25
Q ss_pred CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592 310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL 389 (478)
Q Consensus 310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl 389 (478)
++|++++++||++|+++. .+++||+||+|++++. .|+..|++.+|+
T Consensus 144 dpRv~vi~~Da~~~l~~~----------------------------~~~~yDvIi~D~~dp~------~~~~~L~t~ef~ 189 (308)
T PLN02366 144 DPRVNLHIGDGVEFLKNA----------------------------PEGTYDAIIVDSSDPV------GPAQELFEKPFF 189 (308)
T ss_pred CCceEEEEChHHHHHhhc----------------------------cCCCCCEEEEcCCCCC------CchhhhhHHHHH
Confidence 799999999999999751 2567999999986543 257789999999
Q ss_pred HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcC-ccE--EEeecc---cceEEEEEEcC
Q 038592 390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQ-ELY--EIDVGN---EENFVLIATGL 446 (478)
Q Consensus 390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~-~v~--~~~v~~---~~N~Vl~a~~~ 446 (478)
+.++++|+|||++++|..+. ..+..+.+.++|+++|+ .+. ...++. +.-..++|++.
T Consensus 190 ~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as~~ 254 (308)
T PLN02366 190 ESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCSKE 254 (308)
T ss_pred HHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEECC
Confidence 99999999999999987664 46667889999999995 543 233332 22345677776
No 7
>PRK00811 spermidine synthase; Provisional
Probab=99.95 E-value=5e-26 Score=228.60 Aligned_cols=208 Identities=22% Similarity=0.241 Sum_probs=164.8
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
+...+++++.+|+|+...|++. . .+.|++++ ++.+||.. .
T Consensus 18 ~~~~~~l~~~~s~yq~i~v~~~-----~-------~~g~~l~l--Dg~~q~~~--------------------------~ 57 (283)
T PRK00811 18 FRVKKVLYEEKSPFQRIEIFET-----P-------EFGRLLAL--DGCVMTTE--------------------------R 57 (283)
T ss_pred EeeccEEEEcCCCCeeEEEEEc-----C-------CccEEEEE--CCeeeecC--------------------------c
Confidence 5677899999999998888872 1 24455555 48899741 1
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC-----C
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL-----E 308 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~-----~ 308 (478)
..+.||++|++..++.++ .+++||+||+|+|++++.+.++++ .+|++||||++|+++|++||.. .
T Consensus 58 de~~Y~e~l~h~~~~~~~---------~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~ 128 (283)
T PRK00811 58 DEFIYHEMMTHVPLFAHP---------NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAY 128 (283)
T ss_pred chhhHHHHhhhHHHhhCC---------CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccc
Confidence 168999999887666543 378999999999999999988864 6999999999999999999952 2
Q ss_pred CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592 309 DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV 388 (478)
Q Consensus 309 ~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef 388 (478)
.++|++++++||++|+++ ...+||+||+|+.++. +|+..+++.+|
T Consensus 129 ~d~rv~v~~~Da~~~l~~-----------------------------~~~~yDvIi~D~~dp~------~~~~~l~t~ef 173 (283)
T PRK00811 129 DDPRVELVIGDGIKFVAE-----------------------------TENSFDVIIVDSTDPV------GPAEGLFTKEF 173 (283)
T ss_pred cCCceEEEECchHHHHhh-----------------------------CCCcccEEEECCCCCC------CchhhhhHHHH
Confidence 589999999999999865 3568999999875432 36778999999
Q ss_pred HHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ecc--cce-EEEEEEcC
Q 038592 389 LLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VGN--EEN-FVLIATGL 446 (478)
Q Consensus 389 l~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~~--~~N-~Vl~a~~~ 446 (478)
++.++++|+|||++++|..++ +.+....+.++|+++|+++..+. ++. +++ ..++|++.
T Consensus 174 ~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~~~~w~f~~as~~ 238 (283)
T PRK00811 174 YENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYPSGLWSFTFASKN 238 (283)
T ss_pred HHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCcccCchheeEEeecC
Confidence 999999999999999998765 45677889999999999876554 322 122 23778774
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=99.94 E-value=3.5e-25 Score=226.92 Aligned_cols=211 Identities=18% Similarity=0.138 Sum_probs=164.0
Q ss_pred eeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCccc
Q 038592 156 VSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVL 235 (478)
Q Consensus 156 ~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~L 235 (478)
+..+++++++|+||...|+|. . .| + +|+ +|.+|+.. .|
T Consensus 95 ~~~~vl~~~~S~yQ~I~I~et-----~-------~~-~-L~L--DG~~Q~se----------------------~D---- 132 (374)
T PRK01581 95 GEHTNLFAEKSNYQNINLLQV-----S-------DI-R-LYL--DKQLQFSS----------------------VD---- 132 (374)
T ss_pred cccCEEEecCCCCceEEEEEc-----C-------CE-E-EEE--CCeecccc----------------------cc----
Confidence 455899999999999999982 1 24 3 466 48899751 12
Q ss_pred chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC------
Q 038592 236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE------ 308 (478)
Q Consensus 236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~------ 308 (478)
++.||++|++..++.++ .|++||+||+|+|++++.+.++.+ .+|++|||||+|+++|++++.+.
T Consensus 133 E~iYHE~Lvhp~m~~h~---------~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~ 203 (374)
T PRK01581 133 EQIYHEALVHPIMSKVI---------DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA 203 (374)
T ss_pred HHHHHHHHHHHHHHhCC---------CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc
Confidence 68899999998766543 378999999999999999998874 69999999999999999976553
Q ss_pred -CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHH
Q 038592 309 -DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKD 387 (478)
Q Consensus 309 -~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~e 387 (478)
.++|++++++||++|+++ ...+||+||+|+.++.. .++..+++.+
T Consensus 204 ~~DpRV~vvi~Da~~fL~~-----------------------------~~~~YDVIIvDl~DP~~-----~~~~~LyT~E 249 (374)
T PRK01581 204 FFDNRVNVHVCDAKEFLSS-----------------------------PSSLYDVIIIDFPDPAT-----ELLSTLYTSE 249 (374)
T ss_pred CCCCceEEEECcHHHHHHh-----------------------------cCCCccEEEEcCCCccc-----cchhhhhHHH
Confidence 479999999999999975 35679999999764321 2356799999
Q ss_pred HHHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ec--ccceEEEEEEcCCCCCC
Q 038592 388 VLLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VG--NEENFVLIATGLSIVSS 451 (478)
Q Consensus 388 fl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~--~~~N~Vl~a~~~~~~~~ 451 (478)
||+.++++|+|||+++++..++ ....+..+.++|+++|..+..+. ++ .+.-...+|++.+...+
T Consensus 250 Fy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as~~~~~~~ 319 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAANSAYVLD 319 (374)
T ss_pred HHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEeCCccccc
Confidence 9999999999999999987665 23445668999999999765443 22 22244577787776433
No 9
>PRK00536 speE spermidine synthase; Provisional
Probab=99.93 E-value=5.4e-25 Score=217.99 Aligned_cols=194 Identities=12% Similarity=0.009 Sum_probs=154.7
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
+++++++++++|+||...|+|. ..|+|++.++ +.++|| + |
T Consensus 15 ~~v~~~L~~~kS~~Q~i~i~es------------~~fGr~LvLD--~~~~te------------------~-----d--- 54 (262)
T PRK00536 15 YTIEAKLLDVRSEHNILEIFKS------------KDFGEIAMLN--KQLLFK------------------N-----F--- 54 (262)
T ss_pred EEEEEEEEccCCCCcEEEEEEc------------cccccEEEEe--eeeeec------------------c-----h---
Confidence 6788999999999999999982 2477888876 444433 1 2
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC----CC
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE----DG 310 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~----~d 310 (478)
++.||++|+|..++.++ +|+||||||+|.|+.++.+.+|.. +|+.||||++|+++||+||.-. .|
T Consensus 55 -EfiYHEmLvHppl~~h~---------~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~D 123 (262)
T PRK00536 55 -LHIESELLAHMGGCTKK---------ELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNN 123 (262)
T ss_pred -hhhHHHHHHHHHHhhCC---------CCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcC
Confidence 79999999999887764 489999999999999999999975 9999999999999999999632 68
Q ss_pred CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592 311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL 390 (478)
Q Consensus 311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~ 390 (478)
||+++++ ++.+ ...++||+||+|. +++++|++
T Consensus 124 pRv~l~~-----~~~~----------------------------~~~~~fDVIIvDs---------------~~~~~fy~ 155 (262)
T PRK00536 124 KNFTHAK-----QLLD----------------------------LDIKKYDLIICLQ---------------EPDIHKID 155 (262)
T ss_pred CCEEEee-----hhhh----------------------------ccCCcCCEEEEcC---------------CCChHHHH
Confidence 9999997 3333 1346899999983 13478999
Q ss_pred HHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEE--eeccc-ceEEEEEEcCC
Q 038592 391 AARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEI--DVGNE-ENFVLIATGLS 447 (478)
Q Consensus 391 ~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~--~v~~~-~N~Vl~a~~~~ 447 (478)
.++++|+|||+++++..++ +.+....+.++|+++|+.+..+ .+... .....+|++.+
T Consensus 156 ~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~~~vp~~g~wgf~~aS~~~ 217 (262)
T PRK00536 156 GLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFVAPLRILSNKGYIYASFKT 217 (262)
T ss_pred HHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEEecCCCcchhhhheecCCC
Confidence 9999999999999998877 5777889999999999976443 33322 34456777763
No 10
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.91 E-value=3.9e-23 Score=206.25 Aligned_cols=208 Identities=18% Similarity=0.214 Sum_probs=163.0
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
+++.+++++.+|+|+...|+++- .++|+++++ +.+||.- .
T Consensus 14 ~~~~~~l~~~~s~~q~i~v~~~~------------~~g~~l~ld--g~~q~~~--------------------------~ 53 (270)
T TIGR00417 14 MKVKKVLYHEKSEFQDLEIFETE------------EFGNVLVLD--GVVQTTE--------------------------R 53 (270)
T ss_pred EEeeeEEEEccCCCeeEEEEEcC------------CCceEEEEC--CcccccC--------------------------c
Confidence 56789999999999988888721 245666664 7899750 1
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCC----CC
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGL----ED 309 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~----~~ 309 (478)
..+.||++|++..++.++ +|++||+||+|+|++++.+.++. ..++++||+|++|++.|+++|.. ..
T Consensus 54 ~e~~y~e~l~~~~l~~~~---------~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~ 124 (270)
T TIGR00417 54 DEFIYHEMIAHVPLFTHP---------NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYD 124 (270)
T ss_pred hHHHHHHHhhhhHhhcCC---------CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccccc
Confidence 158899999876555443 36799999999999999888876 46999999999999999999843 24
Q ss_pred CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592 310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL 389 (478)
Q Consensus 310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl 389 (478)
+++++++++||++|+++ ...+||+||+|..... .|+..+++.+|+
T Consensus 125 ~~~v~i~~~D~~~~l~~-----------------------------~~~~yDvIi~D~~~~~------~~~~~l~~~ef~ 169 (270)
T TIGR00417 125 DPRVDLQIDDGFKFLAD-----------------------------TENTFDVIIVDSTDPV------GPAETLFTKEFY 169 (270)
T ss_pred CCceEEEECchHHHHHh-----------------------------CCCCccEEEEeCCCCC------CcccchhHHHHH
Confidence 68999999999999975 3568999999976532 246678999999
Q ss_pred HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccEEEe--ec---ccceEEEEEEcC
Q 038592 390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELYEID--VG---NEENFVLIATGL 446 (478)
Q Consensus 390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~~~~--v~---~~~N~Vl~a~~~ 446 (478)
+.++++|+|||++++|..++ .......+.++++++|+++..+. ++ .+....++|++.
T Consensus 170 ~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~~~~as~~ 233 (270)
T TIGR00417 170 ELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWTFTIGSKN 233 (270)
T ss_pred HHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhEEEEEECC
Confidence 99999999999999997655 45667788999999999875443 22 233466778873
No 11
>PRK03612 spermidine synthase; Provisional
Probab=99.84 E-value=2e-19 Score=194.84 Aligned_cols=212 Identities=18% Similarity=0.185 Sum_probs=154.4
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
....+++++.+|+|+...++|+-.. .+ .-|+| |+ ++.+|... .|
T Consensus 236 ~~~~~v~~~~~s~yq~i~v~~~~~~--~~------~~~~L-~l--dG~~q~s~----------------------~d--- 279 (521)
T PRK03612 236 LYGDPVVYAEQTPYQRIVVTRRGNG--RG------PDLRL-YL--NGRLQFSS----------------------RD--- 279 (521)
T ss_pred hccCeEEEEccCCCeEEEEEEecCC--CC------cceEE-EE--CCEeeccC----------------------cc---
Confidence 3456789999999988877763210 01 12555 44 36678420 12
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC-----
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----- 308 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----- 308 (478)
++.||+++++..+..++ ++++||+||+|+|.+++.+.++.. .+|++||+||+|++.|++++.+.
T Consensus 280 -e~~y~e~l~~~~l~~~~---------~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~ 349 (521)
T PRK03612 280 -EYRYHEALVHPAMAASA---------RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG 349 (521)
T ss_pred -HHHHHHHHHHHHHhhCC---------CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc
Confidence 46799998876544332 378999999999999999988875 79999999999999999955332
Q ss_pred --CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChH
Q 038592 309 --DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRK 386 (478)
Q Consensus 309 --~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ 386 (478)
+++|++++++|+++|+++ ..++||+|++|..+... ..+..+++.
T Consensus 350 ~~~dprv~vi~~Da~~~l~~-----------------------------~~~~fDvIi~D~~~~~~-----~~~~~L~t~ 395 (521)
T PRK03612 350 ALDDPRVTVVNDDAFNWLRK-----------------------------LAEKFDVIIVDLPDPSN-----PALGKLYSV 395 (521)
T ss_pred ccCCCceEEEEChHHHHHHh-----------------------------CCCCCCEEEEeCCCCCC-----cchhccchH
Confidence 468999999999999865 34689999999754331 113568999
Q ss_pred HHHHHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHh-cCccE--EEeecccce-EEEEEEcCC
Q 038592 387 DVLLAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDV-FQELY--EIDVGNEEN-FVLIATGLS 447 (478)
Q Consensus 387 efl~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~v-F~~v~--~~~v~~~~N-~Vl~a~~~~ 447 (478)
+|++.++++|+|||++++|..++ +.+....+.++++++ | .+. ...+...+. ...+|++.+
T Consensus 396 ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~as~~~ 461 (521)
T PRK03612 396 EFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLAGAGA 461 (521)
T ss_pred HHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHeeeCCC
Confidence 99999999999999999998765 455667899999999 8 543 333333222 245676654
No 12
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=99.74 E-value=4e-17 Score=164.72 Aligned_cols=209 Identities=15% Similarity=0.152 Sum_probs=150.6
Q ss_pred eEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcccch
Q 038592 158 SVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGVLVH 237 (478)
Q Consensus 158 r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~L~~ 237 (478)
.+|+|...|+||.+.+-+ - + --+||... +-.|-..+ | +.
T Consensus 235 deIIh~~qspYQ~iVvTr----~--g------~d~rLYld---G~LQfsTr----------------------D----e~ 273 (508)
T COG4262 235 DEIIHAIQSPYQRIVVTR----R--G------DDLRLYLD---GGLQFSTR----------------------D----EY 273 (508)
T ss_pred CceeeeccCccceEEEEE----e--c------CceEEEEc---Cceeeeec----------------------h----hh
Confidence 468899999998776665 1 1 12677663 45573211 2 57
Q ss_pred hcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC-------CC
Q 038592 238 VYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL-------ED 309 (478)
Q Consensus 238 ~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~-------~~ 309 (478)
.||+.++....- + . ....+|||+|+|.|...+.|.++++ .+|+-||+||.|+++|++.--+ -.
T Consensus 274 RYhEsLV~pals--~-~------~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~ 344 (508)
T COG4262 274 RYHESLVYPALS--S-V------RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFS 344 (508)
T ss_pred hhhheeeecccc--c-c------cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCcc
Confidence 799988875321 0 0 1157999999999999999999996 5999999999999999844322 25
Q ss_pred CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592 310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL 389 (478)
Q Consensus 310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl 389 (478)
|||++|+++|+.+|++. ....||+||+|+-+++... -..+++.||+
T Consensus 345 dpRv~Vv~dDAf~wlr~-----------------------------a~~~fD~vIVDl~DP~tps-----~~rlYS~eFY 390 (508)
T COG4262 345 DPRVTVVNDDAFQWLRT-----------------------------AADMFDVVIVDLPDPSTPS-----IGRLYSVEFY 390 (508)
T ss_pred CCeeEEEeccHHHHHHh-----------------------------hcccccEEEEeCCCCCCcc-----hhhhhhHHHH
Confidence 89999999999999987 3558999999997655310 2458999999
Q ss_pred HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCccE----EEeecccceEEEEEEcCCCCCC
Q 038592 390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQELY----EIDVGNEENFVLIATGLSIVSS 451 (478)
Q Consensus 390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v~----~~~v~~~~N~Vl~a~~~~~~~~ 451 (478)
..++++|+++|+++++..++ .++.+-.+..++|+.=-.++ -++.-++ --..+|.+.+..+.
T Consensus 391 ~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGe-WGf~l~~~~~~~fe 457 (508)
T COG4262 391 RLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGE-WGFILAAPGDADFE 457 (508)
T ss_pred HHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccc-cceeecccccCCCC
Confidence 99999999999999999887 45556677888887532232 2232222 23456766665443
No 13
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=99.74 E-value=1.5e-18 Score=171.18 Aligned_cols=194 Identities=21% Similarity=0.245 Sum_probs=152.5
Q ss_pred ceeeEEEEeEecccCceEEEEEeeccccCCccccceeeEEEEeeCCCeEEeeeeecccccccccccccCCccccccCCcc
Q 038592 155 VVSSVVLEKCVGDFAGEMLVEDVEIESEGGCRKREFRRRLRFKRMPNLVQTEVKLVPEAAISLDSVKIGGKVRFRPHIGV 234 (478)
Q Consensus 155 i~~r~vl~~~~S~~~g~~vVedv~~e~~~~~~~~~~~RrLiF~~~~~~vQSe~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 234 (478)
+++..+++.++|.++..++.|.- .+|+-.-+ ++++|..- .|
T Consensus 63 LkVe~vl~~ekS~~qdvlvf~s~------------tyg~vlvl--Dgviqlte----------------------~d--- 103 (337)
T KOG1562|consen 63 LKVEKVLHDEKSDSQDVLVFESA------------TYGKVLVL--DGVIQLTE----------------------RD--- 103 (337)
T ss_pred EEeeeecccCchhHHHHHHHHHh------------hhheeeee--CCeeeCCc----------------------cc---
Confidence 78899999999999999998732 34444333 58999541 11
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC----C
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE----D 309 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~----~ 309 (478)
.+.|.+++++ +++... .+|++|||||+|.|...+...+|.. -+|+.+|||..|+++.++||.-. +
T Consensus 104 -e~~Yqemi~~-l~l~s~--------~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~ 173 (337)
T KOG1562|consen 104 -EFAYQEMIAH-LALCSH--------PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYE 173 (337)
T ss_pred -cccceeeeec-cccccC--------CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccC
Confidence 6888665554 344332 2489999999999998888887865 49999999999999999998521 6
Q ss_pred CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592 310 GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL 389 (478)
Q Consensus 310 d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl 389 (478)
++++.+++|||..|++.. ..++|||||+|.+ |+.+ |+..++.+.++
T Consensus 174 ~~~v~l~iGDG~~fl~~~----------------------------~~~~~dVii~dss--dpvg----pa~~lf~~~~~ 219 (337)
T KOG1562|consen 174 GKKVKLLIGDGFLFLEDL----------------------------KENPFDVIITDSS--DPVG----PACALFQKPYF 219 (337)
T ss_pred CCceEEEeccHHHHHHHh----------------------------ccCCceEEEEecC--Cccc----hHHHHHHHHHH
Confidence 899999999999999874 3578999999754 4442 67889999999
Q ss_pred HHHHHccCcCcEEEEEeCCC--CchHHHHHHHHHHHhcCcc-EEE
Q 038592 390 LAARLILSDFGIFVMNVIPP--NRSFYDMLIQEFRDVFQEL-YEI 431 (478)
Q Consensus 390 ~~~~~~L~~~Gilv~N~~~~--~~~~~~~v~~~l~~vF~~v-~~~ 431 (478)
+.+++.|+++|++++.-.|- +..+.+...+..+.+|+.+ |.+
T Consensus 220 ~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~~~~~f~~t~ya~ 264 (337)
T KOG1562|consen 220 GLVLDALKGDGVVCTQGECMWLHLDYIKEGRSFCYVIFDLTAYAI 264 (337)
T ss_pred HHHHHhhCCCcEEEEecceehHHHHHHHHHHHhHHHhcCccceee
Confidence 99999999999999876554 6777888899999999954 444
No 14
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=4.2e-11 Score=116.02 Aligned_cols=127 Identities=25% Similarity=0.345 Sum_probs=102.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEE-chHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSV-GDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v-~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
+++||.||.+.|..+.++.... +.+++++|+||+..+.|+++|.- .-++++.++. +|+++.+.+.
T Consensus 60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----------- 128 (219)
T COG4122 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----------- 128 (219)
T ss_pred CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----------
Confidence 7899999999999999998875 47999999999999999999853 2467799999 6999998651
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCCC----c--
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPPN----R-- 411 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~----~-- 411 (478)
....||+||+|++.++. ++||+.+.++|+|||++++ |+..+. +
T Consensus 129 -----------------~~~~fDliFIDadK~~y-------------p~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~ 178 (219)
T COG4122 129 -----------------LDGSFDLVFIDADKADY-------------PEYLERALPLLRPGGLIVADNVLFGGRVADPSI 178 (219)
T ss_pred -----------------cCCCccEEEEeCChhhC-------------HHHHHHHHHHhCCCcEEEEeecccCCccCCccc
Confidence 35789999999877653 7899999999999999998 876541 2
Q ss_pred hHHHHHHHHHHHhcCccEE
Q 038592 412 SFYDMLIQEFRDVFQELYE 430 (478)
Q Consensus 412 ~~~~~v~~~l~~vF~~v~~ 430 (478)
.-.+.....+++.|..+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~ 197 (219)
T COG4122 179 RDARTQVRGVRDFNDYLLE 197 (219)
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 2345566667777765443
No 15
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.31 E-value=1.1e-11 Score=119.36 Aligned_cols=109 Identities=26% Similarity=0.363 Sum_probs=89.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
+++||.||.+.|+.+.++...+ +.+|+.+|+||+..++|+++|... -+.+++++++||.+++.++...
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~--------- 116 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND--------- 116 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT---------
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc---------
Confidence 7899999999999999999875 589999999999999999998532 2479999999999999987642
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIP 408 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~ 408 (478)
....+||+||+|++...+ .++|+.+.++|++||++++ |+..
T Consensus 117 ---------------~~~~~fD~VFiDa~K~~y-------------~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 117 ---------------GEEGQFDFVFIDADKRNY-------------LEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp ---------------TTTTSEEEEEEESTGGGH-------------HHHHHHHHHHEEEEEEEEEETTTG
T ss_pred ---------------cCCCceeEEEEcccccch-------------hhHHHHHhhhccCCeEEEEccccc
Confidence 124589999999865432 6789999999999999998 6654
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.30 E-value=6.8e-12 Score=107.26 Aligned_cols=108 Identities=27% Similarity=0.294 Sum_probs=83.2
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhc-CCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYF-GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~F-g~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.||+|.|.++..+.+. ++.+|++||++|++++.|++.+ .....++++++.+|+ .+...
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-------------- 66 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-------------- 66 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT--------------
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc--------------
Confidence 469999999999999999984 6899999999999999999998 233468999999999 44211
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||+|+++.+.... + ++. =...++++.+++.|+|||.++++.
T Consensus 67 ---------------~~~~~D~v~~~~~~~~~---~--~~~-~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 ---------------FLEPFDLVICSGFTLHF---L--LPL-DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp ---------------TSSCEEEEEECSGSGGG---C--CHH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---------------cCCCCCEEEECCCcccc---c--cch-hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34569999996411100 0 010 123678999999999999999874
No 17
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.19 E-value=2e-10 Score=112.77 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=87.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
+++||.||+|.|+.+.++.... +.+|+++|+|++.+++|+++|... -+++++++.+|+.+++.++...
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~--------- 139 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN--------- 139 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC---------
Confidence 7899999999999887777764 479999999999999999988432 2468999999999999875321
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIP 408 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~ 408 (478)
....+||+|++|++... + .++++.+.++|+|||++++ |+..
T Consensus 140 ---------------~~~~~fD~VfiDa~k~~------------y-~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 140 ---------------DPKPEFDFAFVDADKPN------------Y-VHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred ---------------CCCCCCCEEEECCCHHH------------H-HHHHHHHHHhcCCCeEEEEEcCCc
Confidence 12467999999976422 1 4789999999999999987 6643
No 18
>PLN02476 O-methyltransferase
Probab=99.17 E-value=3.1e-10 Score=113.89 Aligned_cols=110 Identities=25% Similarity=0.262 Sum_probs=89.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
+++||.||.|.|+.+.++.... +.+|+++|+||+..++|+++|... -.++++++.+|+.++|.++..+
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~--------- 189 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN--------- 189 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---------
Confidence 7899999999999999988764 468999999999999999998422 2368999999999999875321
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP 409 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~ 409 (478)
....+||+||+|++.... .++++.+.++|++||++++ |+..+
T Consensus 190 ---------------~~~~~FD~VFIDa~K~~Y-------------~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 190 ---------------GEGSSYDFAFVDADKRMY-------------QDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred ---------------ccCCCCCEEEECCCHHHH-------------HHHHHHHHHhcCCCcEEEEecCccC
Confidence 123579999999865332 6799999999999999998 67554
No 19
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.15 E-value=3.2e-10 Score=112.15 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=90.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
+++||.||.+.|..+.++.... +.+|+++|+||+..++|+++|... -.++++++++|+.++|.++...
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~--------- 150 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIED--------- 150 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhc---------
Confidence 7899999999999998888764 579999999999999999998532 2479999999999999885421
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP 409 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~ 409 (478)
.....+||+||+|++.... ..+|+.+.++|++||++++ |+..+
T Consensus 151 --------------~~~~~~fD~iFiDadK~~Y-------------~~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 151 --------------GKYHGTFDFIFVDADKDNY-------------INYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred --------------cccCCcccEEEecCCHHHh-------------HHHHHHHHHhcCCCeEEEEcCCCCC
Confidence 0013579999999874322 6789999999999999998 77543
No 20
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.14 E-value=3.8e-10 Score=97.28 Aligned_cols=114 Identities=25% Similarity=0.329 Sum_probs=85.6
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.+||.+|+|.|.++..+.+....+++++|+||..+++|++.+... ..++++++++|+.++.+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~---------------- 65 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP---------------- 65 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT----------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh----------------
Confidence 489999999999998888776689999999999999999988654 357899999999988643
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
....+||+|+.|..-.... +.. ....-....|++.+.++|+|||++++.+.
T Consensus 66 ------------~~~~~~D~Iv~npP~~~~~-~~~-~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 66 ------------LPDGKFDLIVTNPPYGPRS-GDK-AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp ------------CTTT-EEEEEE--STTSBT-T-----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ------------ccCceeEEEEECCCCcccc-ccc-hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 2467899999976433211 000 01111457899999999999999997653
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.03 E-value=7.1e-09 Score=98.53 Aligned_cols=146 Identities=18% Similarity=0.114 Sum_probs=99.2
Q ss_pred hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEE
Q 038592 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQV 315 (478)
Q Consensus 237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v 315 (478)
-.|++.++..+.+.+. + ..+.+||.||+|+|.++..+.... +.+|++||+++.+++.|++......-+++++
T Consensus 27 ~~~~~~~~d~l~l~~~-l------~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~ 99 (187)
T PRK00107 27 ELWERHILDSLAIAPY-L------PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTV 99 (187)
T ss_pred HHHHHHHHHHHHHHhh-c------CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEE
Confidence 3566777666655432 1 115799999999999888887654 6899999999999999998764322234999
Q ss_pred EEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHc
Q 038592 316 SVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLI 395 (478)
Q Consensus 316 ~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~ 395 (478)
+.+|+.++- ...+||+|+++... .-..+++.+++.
T Consensus 100 ~~~d~~~~~-------------------------------~~~~fDlV~~~~~~--------------~~~~~l~~~~~~ 134 (187)
T PRK00107 100 VHGRAEEFG-------------------------------QEEKFDVVTSRAVA--------------SLSDLVELCLPL 134 (187)
T ss_pred EeccHhhCC-------------------------------CCCCccEEEEcccc--------------CHHHHHHHHHHh
Confidence 999997751 24579999985310 126799999999
Q ss_pred cCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeec
Q 038592 396 LSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVG 434 (478)
Q Consensus 396 L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~ 434 (478)
|+|||.+++-...........+...+--.-..+|.+.++
T Consensus 135 LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (187)
T PRK00107 135 LKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLP 173 (187)
T ss_pred cCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecC
Confidence 999999997654443332222222222222345666654
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.03 E-value=2.4e-09 Score=92.51 Aligned_cols=103 Identities=20% Similarity=0.154 Sum_probs=81.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..+.+.. +.+|+++|+++.+++.|++++....-++++++.+|+..++..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 84 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED--------------- 84 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh---------------
Confidence 3599999999999999888875 589999999999999999876433335789999998755422
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
...+||+|+++.. +. ...++++.+++.|+|||.|++++.
T Consensus 85 --------------~~~~~D~v~~~~~-----------~~--~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 --------------SLPEPDRVFIGGS-----------GG--LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred --------------hcCCCCEEEECCc-----------ch--hHHHHHHHHHHHcCCCCEEEEEec
Confidence 2357999999531 11 125899999999999999999875
No 23
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.01 E-value=2.2e-09 Score=99.97 Aligned_cols=130 Identities=21% Similarity=0.264 Sum_probs=91.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..+.+.. ..+|+++|+++..++.|++.+....-+.++++.+|..+.+
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~----------------- 94 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL----------------- 94 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-----------------
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-----------------
Confidence 5799999999999999999875 5689999999999999998876443233999999987653
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
...+||+|+.+..-.. |. ....-.-..|++.++++|+|||.+.+-.. +.... +. .+
T Consensus 95 --------------~~~~fD~Iv~NPP~~~---~~--~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~-~~~~~-~~---~l 150 (170)
T PF05175_consen 95 --------------PDGKFDLIVSNPPFHA---GG--DDGLDLLRDFIEQARRYLKPGGRLFLVIN-SHLGY-ER---LL 150 (170)
T ss_dssp --------------CTTCEEEEEE---SBT---TS--HCHHHHHHHHHHHHHHHEEEEEEEEEEEE-TTSCH-HH---HH
T ss_pred --------------cccceeEEEEccchhc---cc--ccchhhHHHHHHHHHHhccCCCEEEEEee-cCCCh-HH---HH
Confidence 3578999999532100 00 00001348899999999999999876443 32222 22 28
Q ss_pred HHhcCccEEEee
Q 038592 422 RDVFQELYEIDV 433 (478)
Q Consensus 422 ~~vF~~v~~~~v 433 (478)
++.|..+..+.-
T Consensus 151 ~~~f~~~~~~~~ 162 (170)
T PF05175_consen 151 KELFGDVEVVAK 162 (170)
T ss_dssp HHHHS--EEEEE
T ss_pred HHhcCCEEEEEE
Confidence 899998776653
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.98 E-value=6.4e-09 Score=98.19 Aligned_cols=102 Identities=18% Similarity=0.119 Sum_probs=78.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|+|.++..+.... ..+|++||+++.+++.|++...-..-++++++.+|+.++.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~----------------- 105 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ----------------- 105 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-----------------
Confidence 4699999999999998887654 5799999999999999887643222246999999988751
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...+||+|+.+.. . .-.++++.+++.|+|||.+++-..+.
T Consensus 106 --------------~~~~fD~I~s~~~-----~---------~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 106 --------------HEEQFDVITSRAL-----A---------SLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred --------------ccCCccEEEehhh-----h---------CHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 2457999998531 0 12568899999999999999865444
No 25
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.98 E-value=1.6e-08 Score=99.58 Aligned_cols=149 Identities=25% Similarity=0.342 Sum_probs=109.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.||+|.|.++.+|.+.. ..+|++||+++++.+.|++...+. ..+|++|+++|.-+|.+..
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~------------- 111 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL------------- 111 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc-------------
Confidence 6799999999999999999985 599999999999999999988764 4689999999999997652
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCC---------CChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVE---------FVRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~---------f~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
...+||+|++.- +....+-. |+.+. ..-+++++.++++|+|+|.+.+ +-|.
T Consensus 112 ---------------~~~~fD~Ii~NP--Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~--V~r~ 172 (248)
T COG4123 112 ---------------VFASFDLIICNP--PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF--VHRP 172 (248)
T ss_pred ---------------cccccCEEEeCC--CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE--EecH
Confidence 334799999943 11111111 33321 2348899999999999999885 3342
Q ss_pred chHHHHHHHHHHH-hcCc---cEEEe-ecccceEEEEEE
Q 038592 411 RSFYDMLIQEFRD-VFQE---LYEID-VGNEENFVLIAT 444 (478)
Q Consensus 411 ~~~~~~v~~~l~~-vF~~---v~~~~-v~~~~N~Vl~a~ 444 (478)
+....++..|++ -|.- ...++ .+...|.||+..
T Consensus 173 -erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~ 210 (248)
T COG4123 173 -ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEA 210 (248)
T ss_pred -HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEE
Confidence 334567778887 3442 23333 256789998875
No 26
>PLN03075 nicotianamine synthase; Provisional
Probab=98.96 E-value=3.8e-09 Score=106.75 Aligned_cols=149 Identities=16% Similarity=0.114 Sum_probs=100.1
Q ss_pred CCCeEEEEeCchh-HHHHHHH-hhC-CCEEEEEECChHHHHHHHHhcC--CCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 262 FRPKALCVGVGGG-ALVSFLR-TQL-DFEVVGVEMDEVVLRVARQYFG--LEDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 262 ~~~~VLvIGlGgG-~L~~~L~-~~~-~~~V~~VEiDp~Vl~vA~~~Fg--~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
.+++|+.||+|.| ..+..+. .++ +.+++++|+||+.++.|++++. ..-.++++++.+|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence 3789999999955 4444443 344 6899999999999999999984 2235789999999988521
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 416 (478)
...+||+|++++-- +|..+ .-.+.++.+++.|+|||++++-.......+.--
T Consensus 192 -------------------~l~~FDlVF~~ALi-----~~dk~----~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp 243 (296)
T PLN03075 192 -------------------SLKEYDVVFLAALV-----GMDKE----EKVKVIEHLGKHMAPGALLMLRSAHGARAFLYP 243 (296)
T ss_pred -------------------ccCCcCEEEEeccc-----ccccc----cHHHHHHHHHHhcCCCcEEEEecccchHhhcCC
Confidence 23579999998521 11101 237899999999999999998663222222111
Q ss_pred -HHHHHHHhcCccEEE-eecccceEEEEEEcCCCC
Q 038592 417 -LIQEFRDVFQELYEI-DVGNEENFVLIATGLSIV 449 (478)
Q Consensus 417 -v~~~l~~vF~~v~~~-~v~~~~N~Vl~a~~~~~~ 449 (478)
+--..-+-|..+..+ +.++-.|.|+|+.+....
T Consensus 244 ~v~~~~~~gf~~~~~~~P~~~v~Nsvi~~r~~~~~ 278 (296)
T PLN03075 244 VVDPCDLRGFEVLSVFHPTDEVINSVIIARKPGGP 278 (296)
T ss_pred CCChhhCCCeEEEEEECCCCCceeeEEEEEeecCC
Confidence 111111255544333 345667999999886543
No 27
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.94 E-value=1.9e-08 Score=95.73 Aligned_cols=131 Identities=18% Similarity=0.265 Sum_probs=93.8
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+++|.||+|.|.++..+.+. ++.+|++||+++.+++.|++......-++++++.+|+.++.....
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~------------- 83 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF------------- 83 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC-------------
Confidence 569999999999998877775 468999999999999999876532222479999999999875421
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
.+..+|.|+++..+..+.. ..-...+...+|++.+++.|+|||.|.+... .......+++.+
T Consensus 84 --------------~~~~~d~v~~~~pdpw~k~--~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--~~~~~~~~~~~~ 145 (194)
T TIGR00091 84 --------------PDGSLSKVFLNFPDPWPKK--RHNKRRITQPHFLKEYANVLKKGGVIHFKTD--NEPLFEDMLKVL 145 (194)
T ss_pred --------------CCCceeEEEEECCCcCCCC--CccccccCCHHHHHHHHHHhCCCCEEEEEeC--CHHHHHHHHHHH
Confidence 2457999999753322110 0001235568999999999999999987553 334445555566
Q ss_pred HHh
Q 038592 422 RDV 424 (478)
Q Consensus 422 ~~v 424 (478)
.+.
T Consensus 146 ~~~ 148 (194)
T TIGR00091 146 SEN 148 (194)
T ss_pred HhC
Confidence 554
No 28
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.91 E-value=2.7e-08 Score=95.30 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=90.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.+....-++++++++|+.+.+...
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~-------------- 106 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDM-------------- 106 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHH--------------
Confidence 5799999999999999888765 5799999999999999998775333367999999995544321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC--CCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP--VEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp--~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
..+..||+|++..-.... ..+. .......+++.+++.|+|||.|++-. ........+++
T Consensus 107 -------------~~~~~~D~V~~~~~~p~~----~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~--~~~~~~~~~~~ 167 (202)
T PRK00121 107 -------------FPDGSLDRIYLNFPDPWP----KKRHHKRRLVQPEFLALYARKLKPGGEIHFAT--DWEGYAEYMLE 167 (202)
T ss_pred -------------cCccccceEEEECCCCCC----CccccccccCCHHHHHHHHHHcCCCCEEEEEc--CCHHHHHHHHH
Confidence 135679999985321110 0000 11235889999999999999998643 34454555555
Q ss_pred HHHH
Q 038592 420 EFRD 423 (478)
Q Consensus 420 ~l~~ 423 (478)
.+++
T Consensus 168 ~~~~ 171 (202)
T PRK00121 168 VLSA 171 (202)
T ss_pred HHHh
Confidence 5544
No 29
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.84 E-value=4.9e-08 Score=93.03 Aligned_cols=118 Identities=20% Similarity=0.239 Sum_probs=88.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+||.+|+|+|.++..+.... ..+|++||+++.+++.|++.+.... .++++++.+|+.+++..
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~------------- 107 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT------------- 107 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-------------
Confidence 4689999999999998887654 4699999999999999987753222 35789999999887644
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
....||+|++..... .-.++++.+.+.|+|||.+++.+... +....+..
T Consensus 108 ----------------~~~~~D~V~~~~~~~-------------~~~~~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~ 156 (198)
T PRK00377 108 ----------------INEKFDRIFIGGGSE-------------KLKEIISASWEIIKKGGRIVIDAILL--ETVNNALS 156 (198)
T ss_pred ----------------cCCCCCEEEECCCcc-------------cHHHHHHHHHHHcCCCcEEEEEeecH--HHHHHHHH
Confidence 235799999953110 12679999999999999999865533 33456666
Q ss_pred HHHHh
Q 038592 420 EFRDV 424 (478)
Q Consensus 420 ~l~~v 424 (478)
.|++.
T Consensus 157 ~l~~~ 161 (198)
T PRK00377 157 ALENI 161 (198)
T ss_pred HHHHc
Confidence 67554
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.84 E-value=3.9e-08 Score=92.66 Aligned_cols=114 Identities=16% Similarity=0.143 Sum_probs=84.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||+|+|.++..+.+.. +.+|+++|+++.+++.|++.+....-++++++.+|+...
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~------------------ 93 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE------------------ 93 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh------------------
Confidence 5699999999999999888765 689999999999999999865322224699999997422
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
...+||+|+++... . .-.++++.+.+.|+|||.++++...... ...+.+.+
T Consensus 94 --------------~~~~~D~v~~~~~~------------~-~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l 144 (187)
T PRK08287 94 --------------LPGKADAIFIGGSG------------G-NLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHL 144 (187)
T ss_pred --------------cCcCCCEEEECCCc------------c-CHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHH
Confidence 13469999985311 0 1267899999999999999998654422 23445555
Q ss_pred HH
Q 038592 422 RD 423 (478)
Q Consensus 422 ~~ 423 (478)
++
T Consensus 145 ~~ 146 (187)
T PRK08287 145 EK 146 (187)
T ss_pred HH
Confidence 55
No 31
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.83 E-value=1.3e-07 Score=94.46 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=99.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|+.+..+.+.. ...|+++|+++..++.+++.+....-.+++++.+|+..+-.
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------------- 136 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------------- 136 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh---------------
Confidence 4689999999999998888875 36999999999999999987743322469999999987632
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC-CCCC--------C-----ChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA-PPVE--------F-----VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~-Pp~~--------f-----~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||+|++|+-.+.. |+.. -|.. + .+.++|+.+.+.|+|||.++.-+
T Consensus 137 ---------------~~~~fD~Vl~D~Pcsg~--G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 137 ---------------AVPKFDAILLDAPCSGE--GVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYST 199 (264)
T ss_pred ---------------hccCCCEEEEcCCCCCC--cccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 23359999999855421 2211 1111 1 34679999999999999999877
Q ss_pred CCCCchHHHHHHHHHHHhcCccE
Q 038592 407 IPPNRSFYDMLIQEFRDVFQELY 429 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~v~ 429 (478)
.+.+.+.-+.+++.+.+.++...
T Consensus 200 cs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 200 CSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred CCCChHHHHHHHHHHHHhCCCcE
Confidence 66666555677888877777543
No 32
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.81 E-value=1.3e-08 Score=92.58 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=82.4
Q ss_pred CCeEEEEeCchhHHHHHHHhh--CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQ--LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~--~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|.+...|.+. ++.++++||+++++++.|++.+.-..-++++++++|..+ +.+
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~-------------- 68 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQ-------------- 68 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCG--------------
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc-ccc--------------
Confidence 579999999999999999843 368999999999999999996532222389999999988 422
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-HHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-KDVLLAARLILSDFGIFVMNVIPPNRS 412 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-~efl~~~~~~L~~~Gilv~N~~~~~~~ 412 (478)
.-..+||+|+....- ..+.+ ..+++.+.+.|+++|++++.......+
T Consensus 69 --------------~~~~~~D~I~~~~~l-----------~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 69 --------------ELEEKFDIIISNGVL-----------HHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp --------------CSSTTEEEEEEESTG-----------GGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred --------------ccCCCeeEEEEcCch-----------hhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 001689999996311 12222 579999999999999999876653333
No 33
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.3e-08 Score=97.67 Aligned_cols=117 Identities=21% Similarity=0.176 Sum_probs=87.1
Q ss_pred cchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeE
Q 038592 235 LVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQ 314 (478)
Q Consensus 235 L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~ 314 (478)
+.-+|..+++..++-.. ...+||.||+|.|+.+..|.+..+ +|..||++++..+.|++.|....-.++.
T Consensus 55 is~P~~vA~m~~~L~~~----------~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~ 123 (209)
T COG2518 55 ISAPHMVARMLQLLELK----------PGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVT 123 (209)
T ss_pred ecCcHHHHHHHHHhCCC----------CCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceE
Confidence 45566666555443222 257999999999999988887645 9999999999999999987544445599
Q ss_pred EEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 038592 315 VSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL 394 (478)
Q Consensus 315 v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~ 394 (478)
++++||..-.. ....||.|++.+-.. ..|. .+.+
T Consensus 124 v~~gDG~~G~~------------------------------~~aPyD~I~Vtaaa~-------~vP~---------~Ll~ 157 (209)
T COG2518 124 VRHGDGSKGWP------------------------------EEAPYDRIIVTAAAP-------EVPE---------ALLD 157 (209)
T ss_pred EEECCcccCCC------------------------------CCCCcCEEEEeeccC-------CCCH---------HHHH
Confidence 99999987642 357899999964322 2343 3677
Q ss_pred ccCcCcEEEEEeCC
Q 038592 395 ILSDFGIFVMNVIP 408 (478)
Q Consensus 395 ~L~~~Gilv~N~~~ 408 (478)
.|++||.+++=+..
T Consensus 158 QL~~gGrlv~PvG~ 171 (209)
T COG2518 158 QLKPGGRLVIPVGS 171 (209)
T ss_pred hcccCCEEEEEEcc
Confidence 89999999987773
No 34
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.81 E-value=2.1e-08 Score=96.76 Aligned_cols=100 Identities=26% Similarity=0.177 Sum_probs=77.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.||+|.|.++..|.+.. ..+|++||+++.+++.|++.+....-++++++.+|+.+...
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------------- 142 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------------- 142 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc---------------
Confidence 4699999999999999888875 35899999999999999988754333579999999976531
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
...+||+|+++... . ...+.+.+.|+|||.+++.+..
T Consensus 143 ---------------~~~~fD~Ii~~~~~-----------~-----~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 143 ---------------PLAPYDRIYVTAAG-----------P-----KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred ---------------ccCCCCEEEEcCCc-----------c-----cccHHHHHhcCcCcEEEEEEcC
Confidence 23579999996421 1 1234578899999999987654
No 35
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.3e-08 Score=97.13 Aligned_cols=118 Identities=23% Similarity=0.369 Sum_probs=96.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+|+..|.|+|+|+.+|.... ..+|+.+|++++..+.|++.|.. .-++++++..+|..+.+.
T Consensus 95 g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------------- 160 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------------- 160 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--------------
Confidence 4699999999999999999875 37999999999999999987642 224568999999998853
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
...||+|++|+-+ | .++++++++.|+|||.+++-+.+- +..+.++.
T Consensus 161 -----------------~~~vDav~LDmp~---------P------W~~le~~~~~Lkpgg~~~~y~P~v--eQv~kt~~ 206 (256)
T COG2519 161 -----------------EEDVDAVFLDLPD---------P------WNVLEHVSDALKPGGVVVVYSPTV--EQVEKTVE 206 (256)
T ss_pred -----------------ccccCEEEEcCCC---------h------HHHHHHHHHHhCCCcEEEEEcCCH--HHHHHHHH
Confidence 2379999998733 1 679999999999999999766554 44667788
Q ss_pred HHHHh-cCcc
Q 038592 420 EFRDV-FQEL 428 (478)
Q Consensus 420 ~l~~v-F~~v 428 (478)
.|++. |-++
T Consensus 207 ~l~~~g~~~i 216 (256)
T COG2519 207 ALRERGFVDI 216 (256)
T ss_pred HHHhcCccch
Confidence 88888 7643
No 36
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=97.32 Aligned_cols=134 Identities=21% Similarity=0.183 Sum_probs=105.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc--CCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF--GLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F--g~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.-..|-|+.+....+.-..+|..||-||.|+++|+-.- .-..+.+++++.||+.+++++.
T Consensus 135 G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~------------- 201 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF------------- 201 (287)
T ss_pred CCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-------------
Confidence 5699999999999887766653459999999999999997431 1112458999999999999773
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-----CchHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-----NRSFYD 415 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-----~~~~~~ 415 (478)
.+..||+||-|-.- -+-+.+|++.+|++.+++.|++||-++-.+..+ ..+..+
T Consensus 202 ---------------~D~sfDaIiHDPPR-------fS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~ 259 (287)
T COG2521 202 ---------------DDESFDAIIHDPPR-------FSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPK 259 (287)
T ss_pred ---------------CccccceEeeCCCc-------cchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhH
Confidence 57789999997411 113457999999999999999999999888765 456788
Q ss_pred HHHHHHHHh-cCccEEE
Q 038592 416 MLIQEFRDV-FQELYEI 431 (478)
Q Consensus 416 ~v~~~l~~v-F~~v~~~ 431 (478)
.+.++|+++ |..|-..
T Consensus 260 gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 260 GVAERLRRVGFEVVKKV 276 (287)
T ss_pred HHHHHHHhcCceeeeee
Confidence 999999998 7655433
No 37
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.80 E-value=3.3e-08 Score=96.48 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=76.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||||||.|+..+++. +.+|+++|+++..+++|+.|-... .-.+........+.. .
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~-gv~i~y~~~~~edl~----~------------- 120 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALES-GVNIDYRQATVEDLA----S------------- 120 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhc-cccccchhhhHHHHH----h-------------
Confidence 579999999999999998875 799999999999999999885321 111222223333222 1
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS 412 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~ 412 (478)
..++||+|++= +..-.+. --..|+++|.++++|||++++-.+.|+..
T Consensus 121 -------------~~~~FDvV~cm----EVlEHv~------dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 121 -------------AGGQFDVVTCM----EVLEHVP------DPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred -------------cCCCccEEEEh----hHHHccC------CHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 34789999981 1111111 12569999999999999999988887543
No 38
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.80 E-value=3e-08 Score=95.81 Aligned_cols=99 Identities=24% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.||+|.|+++..+.+.. +.+|++||+++.+++.|++.+....-++++++.+|+.+...
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~--------------- 141 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE--------------- 141 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC---------------
Confidence 4699999999999998888775 36999999999999999988753333579999999875421
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
....||+|+++.... +..+.+.+.|+|||.+++.+.
T Consensus 142 ---------------~~~~fD~I~~~~~~~----------------~~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 142 ---------------ENAPYDRIYVTAAGP----------------DIPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred ---------------cCCCcCEEEECCCcc----------------cchHHHHHhhCCCcEEEEEEc
Confidence 346799999964221 122456778999999998764
No 39
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.80 E-value=4.6e-08 Score=96.76 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=82.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.+|+|.|.++..+.+. +.+|++||+++++++.|++...-. ..++++++.+|..+....
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~--------------- 108 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH--------------- 108 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh---------------
Confidence 579999999999999988875 689999999999999999876422 246799999999886321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
....||+|++.. ....+. -...+++.+.+.|+|||.+++-..+.+
T Consensus 109 --------------~~~~fD~V~~~~----vl~~~~------~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 109 --------------LETPVDLILFHA----VLEWVA------DPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred --------------cCCCCCEEEehh----HHHhhC------CHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 346799999831 100111 125789999999999999987655543
No 40
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.77 E-value=1.4e-07 Score=93.73 Aligned_cols=148 Identities=19% Similarity=0.204 Sum_probs=96.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.+|+|.|.++..+.... ..+++++|+++.+++.|++.+......+++++.+|..+.+
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~----------------- 171 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL----------------- 171 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC-----------------
Confidence 5689999999999999988876 6899999999999999999876223467999999984321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCC--CC------CCCCCCCC--------hHHHHHHHHHccCcCcEEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN--GT------SAPPVEFV--------RKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~--g~------s~Pp~~f~--------~~efl~~~~~~L~~~Gilv~N 405 (478)
...+||+|+.+..-..... .+ ..|...++ -..+++.+.+.|++||.+++.
T Consensus 172 --------------~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 172 --------------PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred --------------CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 2357999999642111000 00 01111121 256888889999999999997
Q ss_pred eCCCCchHHHHHHHHHHH-hcCccEEEeecccceEEEEEE
Q 038592 406 VIPPNRSFYDMLIQEFRD-VFQELYEIDVGNEENFVLIAT 444 (478)
Q Consensus 406 ~~~~~~~~~~~v~~~l~~-vF~~v~~~~v~~~~N~Vl~a~ 444 (478)
...... ..+.+.+++ -|..+..+.--.+..+++++.
T Consensus 238 ~g~~~~---~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 238 IGYDQG---EAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ECchHH---HHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 754432 233334433 255444333222345666553
No 41
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.75 E-value=1.4e-07 Score=93.03 Aligned_cols=100 Identities=15% Similarity=0.205 Sum_probs=79.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||+|.|.++..+.+.. +.+|++||+++.+++.|++.+ ++++++.+|+.++.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~----------------- 89 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQ----------------- 89 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccC-----------------
Confidence 5799999999999998888765 689999999999999999875 35889999987652
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
...+||+|+....- . .+ + -...+++.+++.|+|||.+++.+..
T Consensus 90 --------------~~~~fD~v~~~~~l--~--~~---~---d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 90 --------------PPQALDLIFANASL--Q--WL---P---DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred --------------CCCCccEEEEccCh--h--hC---C---CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 23579999984211 0 01 1 2368999999999999999997643
No 42
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.74 E-value=1.9e-07 Score=98.45 Aligned_cols=112 Identities=21% Similarity=0.193 Sum_probs=80.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-C-CCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-G-EFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d-~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
.++||.+|+|+|+++..+......+|++||+++..++.|++.+.+.. + .+++++.+|+.+++++...
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~----------- 289 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD----------- 289 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-----------
Confidence 47999999999998765443323599999999999999999986532 2 4799999999999976432
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-----hHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-----RKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-----~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||+||+|...-.. ....+. =.+++..+.++|++||++++-.
T Consensus 290 ---------------~~~~fDlVilDPP~f~~------~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 290 ---------------RGEKFDVIVMDPPKFVE------NKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ---------------cCCCCCEEEECCCCCCC------ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 34579999998432110 000111 1345567789999999998633
No 43
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.74 E-value=1.3e-07 Score=92.32 Aligned_cols=115 Identities=21% Similarity=0.199 Sum_probs=82.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.+|+|+|.++..+.+.. ..+++++|+++.+++.|++.+....-++++++.+|+.+.+
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----------------- 150 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL----------------- 150 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC-----------------
Confidence 4689999999999998888875 6799999999999999998764322347999999987642
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----------------ChHHHHHHHHHccCcCcEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----------------VRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----------------~~~efl~~~~~~L~~~Gilv~ 404 (478)
...+||+|+.+.--.... .+...+... .-..+++.+.+.|++||.+++
T Consensus 151 --------------~~~~fD~Vi~npPy~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 151 --------------PGGKFDLIVSNPPYIPEA-DIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred --------------cCCceeEEEECCCCCchh-hhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 346799999964211000 000000010 114788999999999999999
Q ss_pred EeCCC
Q 038592 405 NVIPP 409 (478)
Q Consensus 405 N~~~~ 409 (478)
.....
T Consensus 216 ~~~~~ 220 (251)
T TIGR03534 216 EIGYD 220 (251)
T ss_pred EECcc
Confidence 77543
No 44
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.74 E-value=6e-08 Score=99.59 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=82.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||+|+|.++..|.+ .+.+|++||+++++++.|++++... ...+++++++|+.++-.
T Consensus 132 g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~---------------- 194 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD---------------- 194 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh----------------
Confidence 46899999999999988875 4789999999999999999987542 23579999999876521
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
.+.+||+|+.- . ....+. -...|++.+++.|+|||.+++....+.
T Consensus 195 --------------~~~~FD~Vi~~--~--vLeHv~------d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 195 --------------EGRKFDAVLSL--E--VIEHVA------NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred --------------ccCCCCEEEEh--h--HHHhcC------CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 35679999981 1 110111 126899999999999999998876653
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.74 E-value=2.7e-07 Score=86.26 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=85.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.+|+|.|.++..+.+... +|+++|++|.+++.|++.+... ..+++++.+|..+.
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~------------------- 78 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKG------------------- 78 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc-CCceEEEEcccccc-------------------
Confidence 46899999999999988887644 9999999999999999887532 23578888897553
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC-----------CCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP-----------VEFVRKDVLLAARLILSDFGIFVMNVIPPNR 411 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp-----------~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~ 411 (478)
...+||+|+.+..-..........+ ..-.-..|++.+.+.|+|||.+++...+...
T Consensus 79 -------------~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~ 145 (179)
T TIGR00537 79 -------------VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNG 145 (179)
T ss_pred -------------cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCC
Confidence 2347999998642110000000000 0001367899999999999999886654431
Q ss_pred hHHHHHHHHHHHh
Q 038592 412 SFYDMLIQEFRDV 424 (478)
Q Consensus 412 ~~~~~v~~~l~~v 424 (478)
...++..|++.
T Consensus 146 --~~~~~~~l~~~ 156 (179)
T TIGR00537 146 --EPDTFDKLDER 156 (179)
T ss_pred --hHHHHHHHHhC
Confidence 23455666554
No 46
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=2.2e-07 Score=99.12 Aligned_cols=139 Identities=16% Similarity=0.218 Sum_probs=100.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|+.+..+.... +.+|+++|+++..++.+++.+.-..-.+++++.+|+..+-..
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~-------------- 303 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY-------------- 303 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh--------------
Confidence 4689999999999998888876 479999999999999999776422223589999999876321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVEF-------------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||.|++|+..+.. |+. --|... .+.+.|..+.+.|+|||.+++-+
T Consensus 304 ---------------~~~~fD~Vl~DaPCsg~--G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 304 ---------------VQDTFDRILVDAPCTSL--GTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred ---------------hhccCCEEEECCCCCCC--ccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 23469999999865422 321 112110 35778999999999999999888
Q ss_pred CCCCchHHHHHHHHHHHhcCccEEEe
Q 038592 407 IPPNRSFYDMLIQEFRDVFQELYEID 432 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~v~~~~ 432 (478)
.+..++--..++..+-+-++.....+
T Consensus 367 Cs~~~eEne~vv~~fl~~~~~~~~~~ 392 (431)
T PRK14903 367 CTVTKEENTEVVKRFVYEQKDAEVID 392 (431)
T ss_pred CCCChhhCHHHHHHHHHhCCCcEEec
Confidence 77765555566666666677654333
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.73 E-value=2.5e-07 Score=96.94 Aligned_cols=127 Identities=13% Similarity=0.145 Sum_probs=90.7
Q ss_pred CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
.+||.+|+|.|.++..+.+.. ..+|++||+++.+++.|++.+... ...+++++.+|+.+.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~--------------- 294 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--------------- 294 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC---------------
Confidence 589999999999999888764 689999999999999999876321 1247899999986542
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
...+||+|+++.. ... +.. .... ....++..++++|+|||.|.+-. .+... ...
T Consensus 295 ----------------~~~~fDlIlsNPP--fh~-~~~-~~~~-ia~~l~~~a~~~LkpGG~L~iV~-nr~l~----y~~ 348 (378)
T PRK15001 295 ----------------EPFRFNAVLCNPP--FHQ-QHA-LTDN-VAWEMFHHARRCLKINGELYIVA-NRHLD----YFH 348 (378)
T ss_pred ----------------CCCCEEEEEECcC--ccc-Ccc-CCHH-HHHHHHHHHHHhcccCCEEEEEE-ecCcC----HHH
Confidence 2457999999521 100 100 0111 24689999999999999887643 33333 245
Q ss_pred HHHHhcCccEEE
Q 038592 420 EFRDVFQELYEI 431 (478)
Q Consensus 420 ~l~~vF~~v~~~ 431 (478)
.|++.|..+..+
T Consensus 349 ~L~~~fg~~~~v 360 (378)
T PRK15001 349 KLKKIFGNCTTI 360 (378)
T ss_pred HHHHHcCCceEE
Confidence 677899877654
No 48
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.73 E-value=1.4e-07 Score=93.26 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=77.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.||+|.|.++..|.+.. +.+|+++|+++.+++.|++. +++++++|+.++.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~----------------- 85 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK----------------- 85 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-----------------
Confidence 5799999999999999998875 67999999999999999863 4788999987652
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
...+||+|+....- . .. | -...+++.+++.|+|||.+++.+..
T Consensus 86 --------------~~~~fD~v~~~~~l----~--~~-~---d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 --------------PKPDTDVVVSNAAL----Q--WV-P---EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred --------------CCCCceEEEEehhh----h--hC-C---CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 24579999994211 0 01 1 1277999999999999999987653
No 49
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.72 E-value=8.8e-08 Score=94.49 Aligned_cols=103 Identities=14% Similarity=0.172 Sum_probs=76.4
Q ss_pred CCeEEEEeCchhHHHHHHHhh---CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQ---LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~---~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
..+||.||+|+|.++..+.+. ++.+|++||+++.+++.|++.+... ...+++++.+|..++
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~--------------- 121 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI--------------- 121 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC---------------
Confidence 468999999999988777763 4689999999999999999887432 245899999997654
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
+...||+|++-.. . ...++. ....+++.+++.|+|||.|++-
T Consensus 122 -----------------~~~~~D~vv~~~~----l--~~l~~~--~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 122 -----------------AIENASMVVLNFT----L--QFLEPS--ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -----------------CCCCCCEEehhhH----H--HhCCHH--HHHHHHHHHHHhcCCCCEEEEE
Confidence 2234898876210 0 001111 1367999999999999999873
No 50
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.72 E-value=1.5e-07 Score=89.38 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=79.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..+.+.. +.+|++||+||.+++.|++.+....-++++++.+|+.+.+..
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~--------------- 105 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ--------------- 105 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh---------------
Confidence 4689999999999998887654 689999999999999999875322224699999999775432
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
....+|.|++|.. . .-..+++.+.+.|+|||.++++....
T Consensus 106 --------------~~~~~d~v~~~~~--~------------~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 106 --------------LAPAPDRVCIEGG--R------------PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred --------------CCCCCCEEEEECC--c------------CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 1234678888631 1 12679999999999999999987654
No 51
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.72 E-value=7.1e-07 Score=86.40 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=78.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|.++..+.+.. ..+|+++|+++.+++.|++.+.-..-++++++.+|+.++-
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------------- 109 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP---------------- 109 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC----------------
Confidence 4699999999999998888764 4799999999999999998764222357999999987641
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+||+|++...-. .+ + ....+++.+.+.|+|||.+++
T Consensus 110 --------------~~~~~fD~V~~~~~l~----~~---~---~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 110 --------------FDDNSFDYVTIGFGLR----NV---P---DYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred --------------CCCCCccEEEEecccc----cC---C---CHHHHHHHHHHHcCcCeEEEE
Confidence 1356799999852110 11 1 125789999999999999986
No 52
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.71 E-value=3.3e-07 Score=92.51 Aligned_cols=115 Identities=20% Similarity=0.228 Sum_probs=83.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+.+||.+|+|.|+++..+.+.. +.+|++||+++.+++.|++.+... -+.+++++.+|..+.+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~---------------- 185 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL---------------- 185 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc----------------
Confidence 4689999999999999998875 689999999999999999886422 1357999999987653
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCC--CCCC-----CCCCCCC--------ChHHHHHHHHHccCcCcEEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA--RNGT-----SAPPVEF--------VRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~--~~g~-----s~Pp~~f--------~~~efl~~~~~~L~~~Gilv~N 405 (478)
...+||+|+.|..-... ...+ ..|...+ .-..+++.+.+.|+|||.+++.
T Consensus 186 ---------------~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 186 ---------------PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred ---------------CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 23469999997311100 0000 0111111 1256889999999999999998
Q ss_pred eCC
Q 038592 406 VIP 408 (478)
Q Consensus 406 ~~~ 408 (478)
+..
T Consensus 251 ~g~ 253 (284)
T TIGR03533 251 VGN 253 (284)
T ss_pred ECc
Confidence 875
No 53
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.70 E-value=8.5e-08 Score=91.50 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=75.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.+|+|.|.++.+|.+. +.+|++||+++++++.|++......-.+++++++|..++-
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~------------------ 91 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT------------------ 91 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC------------------
Confidence 579999999999999999875 6799999999999999998764332345888888876541
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
...+||+|+.-.. . ...++. ....+++.+++.|+|||.+++
T Consensus 92 -------------~~~~fD~I~~~~~----~--~~~~~~--~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 92 -------------FDGEYDFILSTVV----L--MFLEAK--TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred -------------cCCCcCEEEEecc----h--hhCCHH--HHHHHHHHHHHHcCCCcEEEE
Confidence 2346999997210 0 001121 236899999999999998543
No 54
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.70 E-value=4.5e-07 Score=92.62 Aligned_cols=143 Identities=19% Similarity=0.252 Sum_probs=95.5
Q ss_pred CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+||.+|+|.|+++..+.... +.+|+++|+++.+++.|++..... ...+++++.+|..+.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l----------------- 197 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL----------------- 197 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC-----------------
Confidence 689999999999999888775 689999999999999999886432 2357999999987653
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCC--CCC-----CCCCCCCC--------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA--RNG-----TSAPPVEF--------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~--~~g-----~s~Pp~~f--------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||+|+.|..-... ... ...|...+ .-..+++.+.+.|+|||.+++.+
T Consensus 198 --------------~~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 198 --------------PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred --------------CCCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 23469999996311000 000 01122211 12578899999999999999987
Q ss_pred CCCCchHHHHHHHHHHHhcCc--cEEEeecccceEEEEEEc
Q 038592 407 IPPNRSFYDMLIQEFRDVFQE--LYEIDVGNEENFVLIATG 445 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~--v~~~~v~~~~N~Vl~a~~ 445 (478)
... .. . +.+.|+. ..+.......-.++++++
T Consensus 264 g~~-~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (307)
T PRK11805 264 GNS-RV---H----LEEAYPDVPFTWLEFENGGDGVFLLTR 296 (307)
T ss_pred CcC-HH---H----HHHHHhhCCCEEEEecCCCceEEEEEH
Confidence 654 21 2 2233432 223444445556666663
No 55
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.69 E-value=1.1e-07 Score=91.39 Aligned_cols=99 Identities=26% Similarity=0.210 Sum_probs=76.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+||.||+|.|.++..+.+.. ..+|+++|+++.+++.|++.+... ...+++++.+|+.+.+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-------------- 138 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-------------- 138 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------------
Confidence 3699999999999998888765 369999999999999999876422 23469999999976531
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
...+||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 139 ----------------~~~~fD~Ii~~~~~----------------~~~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 139 ----------------KHAPFDAIIVTAAA----------------STIPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ----------------cCCCccEEEEccCc----------------chhhHHHHHhcCcCcEEEEEEc
Confidence 23579999996421 1123467789999999998764
No 56
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.69 E-value=2.2e-07 Score=89.25 Aligned_cols=105 Identities=19% Similarity=0.181 Sum_probs=77.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.+|+|.|+++..+......+|++||+|+..++.|++.+....-.+++++.+|+.+++..
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~---------------- 117 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ---------------- 117 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh----------------
Confidence 3699999999999997544333479999999999999999876433224799999999998743
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC-CCCChHHHHHHHHHc--cCcCcEEEEEeCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP-VEFVRKDVLLAARLI--LSDFGIFVMNVIP 408 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp-~~f~~~efl~~~~~~--L~~~Gilv~N~~~ 408 (478)
....||+|++| || ..=+..+.++.+... |+++|++++-...
T Consensus 118 -------------~~~~fDlV~~D------------PPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 118 -------------PGTPHNVVFVD------------PPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred -------------cCCCceEEEEC------------CCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 23469999997 33 111345566766664 7899998875443
No 57
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.67 E-value=3.5e-07 Score=89.50 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=77.2
Q ss_pred CCeEEEEeCchhHHHHHHHhh---CCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQ---LDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~---~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
..+||.||+|.|.++..+.+. ++.++++||+++.+++.|++.+.- ....+++++.+|..++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~--------------- 118 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--------------- 118 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC---------------
Confidence 468999999999998888775 368999999999999999988653 2345799999999865
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
....+|+|++... . . .+++. --..+++.+++.|+|||.+++-
T Consensus 119 -----------------~~~~~d~v~~~~~----l-~-~~~~~--~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 119 -----------------EIKNASMVILNFT----L-Q-FLPPE--DRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred -----------------CCCCCCEEeeecc----h-h-hCCHH--HHHHHHHHHHHhcCCCeEEEEe
Confidence 1234888776210 0 0 01111 1367999999999999999874
No 58
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.67 E-value=5.9e-08 Score=79.41 Aligned_cols=94 Identities=26% Similarity=0.336 Sum_probs=71.9
Q ss_pred EEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccC
Q 038592 267 LCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKD 346 (478)
Q Consensus 267 LvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~ 346 (478)
|.+|+|.|..+..|.++.+.+|+++|+++.+++.|++.+. ..++.+..+|..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---~~~~~~~~~d~~~l----------------------- 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---NEGVSFRQGDAEDL----------------------- 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT---TSTEEEEESBTTSS-----------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc---ccCchheeehHHhC-----------------------
Confidence 7899999999999998867899999999999999999875 34567888886655
Q ss_pred CCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEE
Q 038592 347 GNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 347 ~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~ 404 (478)
+.++..||+|+.-- . + ..+ -...+++.+++.|+|||.+++
T Consensus 55 -------~~~~~sfD~v~~~~--~-----~----~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 55 -------PFPDNSFDVVFSNS--V-----L----HHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -------SS-TT-EEEEEEES--H-----G----GGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------cccccccccccccc--c-----e----eeccCHHHHHHHHHHHcCcCeEEeC
Confidence 12578899999831 1 1 011 347899999999999999985
No 59
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.65 E-value=7.1e-08 Score=94.73 Aligned_cols=116 Identities=26% Similarity=0.348 Sum_probs=77.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+.+||.+|+|+|.++..|.+.. +.+|++||+++.|+++|++...-....+++++++|+.+.=
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp---------------- 111 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP---------------- 111 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB------------------
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc----------------
Confidence 5699999999999999888875 4799999999999999998764322348999999998751
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCCCchHHHHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPPNRSFYDMLI 418 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~~~~~~~v~ 418 (478)
.+++.||+|++-- |+.--| --...++.+++.|+|||.+++ -...+.....+.+.
T Consensus 112 --------------~~d~sfD~v~~~f-------glrn~~---d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 112 --------------FPDNSFDAVTCSF-------GLRNFP---DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp --------------S-TT-EEEEEEES--------GGG-S---SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred --------------CCCCceeEEEHHh-------hHHhhC---CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 2568899999821 221111 247799999999999998875 44434444444333
No 60
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=4.7e-07 Score=96.92 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=95.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|+.+.++.+.. ..+|+++|+++.+++.+++.+.-..-.+++++.+|+.++.
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---------------- 314 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---------------- 314 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc----------------
Confidence 4689999999999888888765 3699999999999999998764222236899999998763
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCC-CCCC---C----------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSA-PPVE---F----------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~-Pp~~---f----------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||+|++|+..+.. |+.. -|.. + ....+|..+.+.|+|||.+++.+
T Consensus 315 ---------------~~~~fD~Vl~D~Pcsg~--g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvyst 377 (445)
T PRK14904 315 ---------------PEEQPDAILLDAPCTGT--GVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYAT 377 (445)
T ss_pred ---------------cCCCCCEEEEcCCCCCc--chhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 23579999999754321 2211 1111 1 23568999999999999999988
Q ss_pred CCCCchHHHHHHHHHHHhcCc
Q 038592 407 IPPNRSFYDMLIQEFRDVFQE 427 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~ 427 (478)
.+-.++--..+++.+.+.++.
T Consensus 378 cs~~~~Ene~~v~~~l~~~~~ 398 (445)
T PRK14904 378 CSIEPEENELQIEAFLQRHPE 398 (445)
T ss_pred CCCChhhHHHHHHHHHHhCCC
Confidence 877655445566666665554
No 61
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.64 E-value=4.5e-07 Score=90.35 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=80.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
..+||.+|+|+|.++..+.+.. ..+|++||++++|++.|++..... ..++++++++|+.++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-------------- 139 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-------------- 139 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC--------------
Confidence 4699999999999998888764 369999999999999998765321 235799999998654
Q ss_pred CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
+..+..||+|++.. ++...+ --..+++++++.|+|||.+++--+..
T Consensus 140 ----------------p~~~~sfD~V~~~~-------~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 140 ----------------PFDDCYFDAITMGY-------GLRNVV---DRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred ----------------CCCCCCEeEEEEec-------ccccCC---CHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 01456799998732 111111 23789999999999999987754444
No 62
>PRK04266 fibrillarin; Provisional
Probab=98.64 E-value=6.1e-07 Score=87.81 Aligned_cols=141 Identities=19% Similarity=0.228 Sum_probs=93.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..|.+.. ..+|.+||+++.+++.+.+.... .+++.++.+|+...... .
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~--~~nv~~i~~D~~~~~~~--~------------ 136 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE--RKNIIPILADARKPERY--A------------ 136 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh--cCCcEEEECCCCCcchh--h------------
Confidence 4699999999999999998876 46999999999988866554331 25688999997542100 0
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------CchHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------NRSFY 414 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------~~~~~ 414 (478)
.-...||+|+.|+...+ ....+++.+++.|+|||.+++.+..+ .....
T Consensus 137 -------------~l~~~~D~i~~d~~~p~------------~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~ 191 (226)
T PRK04266 137 -------------HVVEKVDVIYQDVAQPN------------QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIF 191 (226)
T ss_pred -------------hccccCCEEEECCCChh------------HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHH
Confidence 01245999999753211 11457899999999999999864332 12333
Q ss_pred HHHHHHHHHh-cCccEEEeecc--cceEEEEEE
Q 038592 415 DMLIQEFRDV-FQELYEIDVGN--EENFVLIAT 444 (478)
Q Consensus 415 ~~v~~~l~~v-F~~v~~~~v~~--~~N~Vl~a~ 444 (478)
+..++.+++. |..+....... ..+..+++.
T Consensus 192 ~~~~~~l~~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 192 KEEIRKLEEGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 4456667665 77666655532 234445543
No 63
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.64 E-value=1.8e-07 Score=93.28 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=81.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.++..|....+.+|+++|+++.+++.|++.+.. .++++++++|+.+.
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~------------------- 111 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKK------------------- 111 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccC-------------------
Confidence 469999999999999888776678999999999999999998753 46799999997632
Q ss_pred cccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
+.++.+||+|+. ++... .++. -...+++.+++.|+|||.|++.-..
T Consensus 112 -----------~~~~~~FD~V~s~~~l~h-------~~~~--d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 112 -----------DFPENTFDMIYSRDAILH-------LSYA--DKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred -----------CCCCCCeEEEEEhhhHHh-------CCHH--HHHHHHHHHHHHcCCCcEEEEEEec
Confidence 014568999998 32110 0111 1367999999999999999986543
No 64
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.63 E-value=4.5e-07 Score=91.67 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=84.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..+.+....+|++||+||.+++.|++.+.... ..++.+..+|....
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~------------------ 221 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP------------------ 221 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc------------------
Confidence 47999999999999988876544699999999999999998875432 34567776662211
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
...+||+|+.++.. . .-..++..+++.|+|||.+++--... .....+...+
T Consensus 222 --------------~~~~fDlVvan~~~-----------~--~l~~ll~~~~~~LkpgG~li~sgi~~--~~~~~v~~~~ 272 (288)
T TIGR00406 222 --------------IEGKADVIVANILA-----------E--VIKELYPQFSRLVKPGGWLILSGILE--TQAQSVCDAY 272 (288)
T ss_pred --------------cCCCceEEEEecCH-----------H--HHHHHHHHHHHHcCCCcEEEEEeCcH--hHHHHHHHHH
Confidence 34579999986421 1 12578999999999999999754433 2245667777
Q ss_pred HHhcC
Q 038592 422 RDVFQ 426 (478)
Q Consensus 422 ~~vF~ 426 (478)
++.|.
T Consensus 273 ~~~f~ 277 (288)
T TIGR00406 273 EQGFT 277 (288)
T ss_pred HccCc
Confidence 76664
No 65
>PLN02244 tocopherol O-methyltransferase
Probab=98.63 E-value=2.1e-07 Score=96.20 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=81.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.||+|.|.++..|.+.++.+|++||+++.+++.|++..... ..++++++++|+.+.-
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~----------------- 181 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP----------------- 181 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-----------------
Confidence 5789999999999999998877889999999999999998765322 2357999999987641
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
..+..||+|+.- .+.. .+ + -...+++.+++.|+|||.|++..+
T Consensus 182 -------------~~~~~FD~V~s~-~~~~---h~---~---d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 182 -------------FEDGQFDLVWSM-ESGE---HM---P---DKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred -------------CCCCCccEEEEC-Cchh---cc---C---CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 145789999982 1110 01 1 236899999999999999988554
No 66
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.63 E-value=7.5e-07 Score=86.01 Aligned_cols=141 Identities=22% Similarity=0.310 Sum_probs=95.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~ 338 (478)
..+||.||+|.|.++..+.+.. ..+|++||+++. ...++++++.+|..+. +.++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~~-------- 112 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLER-------- 112 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHHH--------
Confidence 4589999999999999888875 369999999992 1124689999998764 3332211
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----ChHHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----VRKDVLLAARLILSDFGIFVMNVIPPNRSF 413 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~ 413 (478)
.....||+|+.|..... . |. |.... ....+|+.+.+.|+|||.|++-++... .
T Consensus 113 ----------------~~~~~~D~V~S~~~~~~-~-g~--~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~-~- 170 (209)
T PRK11188 113 ----------------VGDSKVQVVMSDMAPNM-S-GT--PAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE-G- 170 (209)
T ss_pred ----------------hCCCCCCEEecCCCCcc-C-CC--hHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc-C-
Confidence 13567999999753211 1 10 11010 125689999999999999998765542 2
Q ss_pred HHHHHHHHHHhcCccEEEee----cccceEEEEEE
Q 038592 414 YDMLIQEFRDVFQELYEIDV----GNEENFVLIAT 444 (478)
Q Consensus 414 ~~~v~~~l~~vF~~v~~~~v----~~~~N~Vl~a~ 444 (478)
...++..+++.|..+..++- .+.....++|.
T Consensus 171 ~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~ 205 (209)
T PRK11188 171 FDEYLREIRSLFTKVKVRKPDSSRARSREVYIVAT 205 (209)
T ss_pred HHHHHHHHHhCceEEEEECCccccccCceeEEEee
Confidence 45567889999998877763 22334445554
No 67
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.62 E-value=2.5e-07 Score=104.34 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=84.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
.++||.+|+|+|+++..+......+|++||+++..+++|++.+.+.. ..+++++.+|+.+|+++
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~-------------- 604 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE-------------- 604 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH--------------
Confidence 47999999999999988887533589999999999999999985432 25899999999999865
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...+||+||+|...-.....+ ...+ .-.+.+..+.++|+|||++++-..+.
T Consensus 605 ---------------~~~~fDlIilDPP~f~~~~~~---~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 605 ---------------AREQFDLIFIDPPTFSNSKRM---EDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred ---------------cCCCcCEEEECCCCCCCCCcc---chhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 245799999984321100000 0000 11457788889999999998755444
No 68
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=6.7e-07 Score=95.65 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=93.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|+.+..+.+.. +.+|++||+++..++.+++.+....-.+++++.+|+.++...
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------------- 316 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK-------------- 316 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch--------------
Confidence 4689999999999998888875 579999999999999999876422213499999999876422
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCC-C------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVE-F------------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~-f------------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
-...||+|++|...+. . |+ .--|.. + +..++|+.+.+.|+|||.+++..
T Consensus 317 ---------------~~~~fD~Vl~D~Pcsg-~-G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 317 ---------------FAEKFDKILVDAPCSG-L-GVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred ---------------hcccCCEEEEcCCCCC-C-eeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 1256999999975331 1 21 111111 1 23578999999999999999877
Q ss_pred CCCCchHHHHHHHHHHHhcCc
Q 038592 407 IPPNRSFYDMLIQEFRDVFQE 427 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~ 427 (478)
.+-..+.-..++..+.+..+.
T Consensus 380 cs~~~~Ene~vv~~~l~~~~~ 400 (444)
T PRK14902 380 CTIEKEENEEVIEAFLEEHPE 400 (444)
T ss_pred CCCChhhhHHHHHHHHHhCCC
Confidence 665444344455554454443
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.60 E-value=8.4e-07 Score=89.43 Aligned_cols=147 Identities=18% Similarity=0.186 Sum_probs=95.8
Q ss_pred CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+||.+|+|+|.++..+.... +.+|++||+++..+++|++..... ...+++++.+|..+.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~----------------- 178 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL----------------- 178 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-----------------
Confidence 689999999999999888875 589999999999999999876422 2356999999986542
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCC--CC-----CCCCCCCC--------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--NG-----TSAPPVEF--------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--~g-----~s~Pp~~f--------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||+|+.+..--... .. ...|...+ .-..+++.+.+.|+|||.+++.+
T Consensus 179 --------------~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 179 --------------AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred --------------cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 223799999963111000 00 01121111 23568888999999999999988
Q ss_pred CCCCchHHHHHHHHHHH--hcCccEEEeecccceEEEEEE
Q 038592 407 IPPNRSFYDMLIQEFRD--VFQELYEIDVGNEENFVLIAT 444 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~--vF~~v~~~~v~~~~N~Vl~a~ 444 (478)
...... .+.+.+.. -|..+..++=-.+...++++.
T Consensus 245 g~~q~~---~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~ 281 (284)
T TIGR00536 245 GNWQQK---SLKELLRIKFTWYDVENGRDLNGKERVVLGF 281 (284)
T ss_pred CccHHH---HHHHHHHhcCCCceeEEecCCCCCceEEEEE
Confidence 765333 23333432 244443333122345666664
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=98.60 E-value=8.7e-07 Score=82.44 Aligned_cols=115 Identities=21% Similarity=0.199 Sum_probs=78.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|.++..+... +.+|+++|+++.+++.|++.+.... +.++.++.+|..+.+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~---------------- 86 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF---------------- 86 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc----------------
Confidence 468999999999999988877 7899999999999999987764321 222888889875532
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCC--C--------CCCCCCC-CCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--N--------GTSAPPV-EFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--~--------g~s~Pp~-~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...+||+|+.+.--.... . ...+... ...-..+++.+.+.|+|+|.+++.+.+.
T Consensus 87 ---------------~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 87 ---------------RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred ---------------cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 233799999853110000 0 0000000 0123568999999999999988776543
No 71
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.60 E-value=7.9e-07 Score=87.53 Aligned_cols=107 Identities=25% Similarity=0.330 Sum_probs=84.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.||+|+|-++..+.+.. ..+|+++|+++.|+++|++-..-..-..++++++||.+.
T Consensus 52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L------------------ 113 (238)
T COG2226 52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL------------------ 113 (238)
T ss_pred CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC------------------
Confidence 6799999999999999999876 589999999999999999887533222399999999875
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
+.+++.||++.+.- |+.--+ --+..|+.++|.|+|||.+++.=.+.
T Consensus 114 ------------Pf~D~sFD~vt~~f-------glrnv~---d~~~aL~E~~RVlKpgG~~~vle~~~ 159 (238)
T COG2226 114 ------------PFPDNSFDAVTISF-------GLRNVT---DIDKALKEMYRVLKPGGRLLVLEFSK 159 (238)
T ss_pred ------------CCCCCccCEEEeee-------hhhcCC---CHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence 13788999999942 221111 23789999999999999888754443
No 72
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.58 E-value=1.6e-07 Score=79.47 Aligned_cols=94 Identities=23% Similarity=0.355 Sum_probs=70.0
Q ss_pred EEEEeCchhHHHHHHHhhC----CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 266 ALCVGVGGGALVSFLRTQL----DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 266 VLvIGlGgG~L~~~L~~~~----~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
||.+|+|+|...+.+.+.+ ..++++||+|+++++.|++++.- ...+++++++|+.++- .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~-~~~~~~~~~~D~~~l~-~--------------- 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE-DGPKVRFVQADARDLP-F--------------- 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH-TTTTSEEEESCTTCHH-H---------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh-cCCceEEEECCHhHCc-c---------------
Confidence 6899999999999998875 38999999999999999998742 2237899999998753 2
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC---hHHHHHHHHHccCcCc
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV---RKDVLLAARLILSDFG 400 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~---~~efl~~~~~~L~~~G 400 (478)
...+||+|++= . .. -.+|- -..+++.+.++|+|||
T Consensus 64 --------------~~~~~D~v~~~--~-~~-------~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 --------------SDGKFDLVVCS--G-LS-------LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------------HSSSEEEEEE---T-TG-------GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------------cCCCeeEEEEc--C-Cc-------cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 35689999991 0 00 11122 3789999999999988
No 73
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.58 E-value=4.5e-07 Score=86.40 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=71.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.+|+|.|.++.+|.+. +.+|+++|+++.+++.|++..... +-++++.+.|...+-
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~-~~~v~~~~~d~~~~~------------------ 90 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARE-NLPLRTDAYDINAAA------------------ 90 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHh-CCCceeEeccchhcc------------------
Confidence 579999999999999999875 679999999999999998765321 113666677754320
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
...+||+|+.-.. . ...++. ....+++.+++.|+|||.+++
T Consensus 91 -------------~~~~fD~I~~~~~----~--~~~~~~--~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 91 -------------LNEDYDFIFSTVV----F--MFLQAG--RVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred -------------ccCCCCEEEEecc----c--ccCCHH--HHHHHHHHHHHHhCCCcEEEE
Confidence 2346999987210 0 000111 236899999999999998554
No 74
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.55 E-value=5.5e-07 Score=86.51 Aligned_cols=103 Identities=22% Similarity=0.307 Sum_probs=80.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.||+|.|.++..+.+.. ..+++++|+++.+++.|++.+. ++++++.+|..+..
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~----------------- 93 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLP----------------- 93 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCC-----------------
Confidence 5789999999999999888875 5789999999999999998875 37889999976541
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...++||+|+.... +...+ -...++..+++.|+|||.+++.....
T Consensus 94 -------------~~~~~fD~vi~~~~-------l~~~~---~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 94 -------------LEDSSFDLIVSNLA-------LQWCD---DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -------------CCCCceeEEEEhhh-------hhhcc---CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 13567999998421 10011 13679999999999999999876544
No 75
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.55 E-value=6.1e-07 Score=86.97 Aligned_cols=110 Identities=24% Similarity=0.267 Sum_probs=89.3
Q ss_pred CCeEEEEeCchhHHHHHHHhh-C-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-L-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
++++|.||.=+|+.+...+.. + +.+|+++|+|+.-.+++.++-.+. -+..++++++++.+-|.++..+
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~--------- 144 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD--------- 144 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc---------
Confidence 789999999999866555544 4 589999999999999998776544 3678999999999999997653
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP 409 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~ 409 (478)
.....||.+|+|.|... +. .+++.+-++|++||++++ |+..+
T Consensus 145 ---------------~~~~tfDfaFvDadK~n------------Y~-~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 145 ---------------GESGTFDFAFVDADKDN------------YS-NYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred ---------------CCCCceeEEEEccchHH------------HH-HHHHHHHhhcccccEEEEeccccC
Confidence 25678999999987643 22 799999999999999998 65443
No 76
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.55 E-value=8.5e-07 Score=96.42 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=97.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+.+||.+|+|+|+++..+.... +.+|++||+++.++++|++.+... .+++++++.+|..+.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~---------------- 202 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI---------------- 202 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC----------------
Confidence 4689999999999998887664 689999999999999999876321 2358999999986543
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCC--CCC------CCCCCCCC--------hHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--NGT------SAPPVEFV--------RKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--~g~------s~Pp~~f~--------~~efl~~~~~~L~~~Gilv~ 404 (478)
...+||+|+.+..--... ..+ .-|...|+ -..+++.+.+.|+|||.+++
T Consensus 203 ---------------~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 203 ---------------EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred ---------------cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 235799999854110000 000 01211222 24467788899999999998
Q ss_pred EeCCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEEcCCC
Q 038592 405 NVIPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIATGLSI 448 (478)
Q Consensus 405 N~~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~~~~~ 448 (478)
-+..... +.+.+.+.+. |..+..++=-.+...+++++...+
T Consensus 268 Eig~~q~---~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~~~ 309 (506)
T PRK01544 268 EIGFKQE---EAVTQIFLDHGYNIESVYKDLQGHSRVILISPINL 309 (506)
T ss_pred EECCchH---HHHHHHHHhcCCCceEEEecCCCCceEEEeccccC
Confidence 6544333 3344444443 444433332233467777765544
No 77
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.54 E-value=4.5e-07 Score=87.06 Aligned_cols=98 Identities=22% Similarity=0.188 Sum_probs=74.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.+|+|.|.++..+.+.. .+|++||+++.+++.|++.+....-.+++++.+|+.+.+.
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----------------- 140 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP----------------- 140 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-----------------
Confidence 4699999999999888777654 4899999999999999988753222458999999854321
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
...+||+|+++... ..+.+.+.+.|+|||.+++.+.
T Consensus 141 -------------~~~~fD~I~~~~~~----------------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 141 -------------AYAPFDRILVTAAA----------------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred -------------cCCCcCEEEEccCc----------------hhhhHHHHHhcCCCcEEEEEEc
Confidence 23579999996411 1223557889999999998776
No 78
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.54 E-value=1.3e-06 Score=90.49 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=92.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..+.+.. ..+|+++|+++.+++.|++.+.... -..+++.+|+...
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~-l~~~~~~~D~~~~------------------ 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG-LEGEVFASNVFSD------------------ 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-CCCEEEEcccccc------------------
Confidence 3589999999999999988874 5799999999999999998765321 2346777887543
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
...+||+|+++. +-. .++. ...-....|+..+++.|+|||.+.+-. ++... +. ..+
T Consensus 258 --------------~~~~fDlIvsNP--PFH-~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVa-n~~l~-y~---~~l 313 (342)
T PRK09489 258 --------------IKGRFDMIISNP--PFH-DGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVA-NAFLP-YP---DLL 313 (342)
T ss_pred --------------cCCCccEEEECC--Ccc-CCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEE-eCCCC-hH---HHH
Confidence 235799999952 100 0110 000023789999999999999886522 22222 22 345
Q ss_pred HHhcCccEEEeecccceEEEEEEcC
Q 038592 422 RDVFQELYEIDVGNEENFVLIATGL 446 (478)
Q Consensus 422 ~~vF~~v~~~~v~~~~N~Vl~a~~~ 446 (478)
.+.|..+-.+. .+..=.|+-|.+.
T Consensus 314 ~~~Fg~~~~la-~~~~f~v~~a~~~ 337 (342)
T PRK09489 314 DETFGSHEVLA-QTGRFKVYRAIMT 337 (342)
T ss_pred HHHcCCeEEEE-eCCCEEEEEEEcc
Confidence 67898875554 3333455656543
No 79
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.54 E-value=8.8e-08 Score=92.62 Aligned_cols=100 Identities=25% Similarity=0.237 Sum_probs=73.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.||.|+|+.+..|.+..+ .+|++||++|.+++.|++.+.-..-.+++++++||..-..
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~--------------- 137 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP--------------- 137 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG---------------
T ss_pred CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc---------------
Confidence 46999999999999988888753 4899999999999999998753333589999999976432
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
....||.|++.... . +.-..+.+.|++||.+++-+..
T Consensus 138 ---------------~~apfD~I~v~~a~-------~---------~ip~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 138 ---------------EEAPFDRIIVTAAV-------P---------EIPEALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp ---------------GG-SEEEEEESSBB-------S---------S--HHHHHTEEEEEEEEEEESS
T ss_pred ---------------cCCCcCEEEEeecc-------c---------hHHHHHHHhcCCCcEEEEEEcc
Confidence 24579999995421 1 1223477789999999987764
No 80
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.54 E-value=2.8e-06 Score=80.13 Aligned_cols=142 Identities=21% Similarity=0.275 Sum_probs=91.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~ 338 (478)
..+||.+|+|+|.++..+.... ..+|++||++|.+ . .++++++.+|..+. +......
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~---~~~i~~~~~d~~~~~~~~~l~~~-------- 93 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P---IENVDFIRGDFTDEEVLNKIRER-------- 93 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c---CCCceEEEeeCCChhHHHHHHHH--------
Confidence 4699999999999998887764 3689999999964 1 24578888887542 2221110
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPNRSFY 414 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~ 414 (478)
....+||+|++|... . ..|..+. .+. ....++..+.+.|+|||.+++...... . .
T Consensus 94 ----------------~~~~~~D~V~~~~~~-~-~~g~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~-~-~ 152 (188)
T TIGR00438 94 ----------------VGDDKVDVVMSDAAP-N-ISGYWDI-DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE-E-I 152 (188)
T ss_pred ----------------hCCCCccEEEcCCCC-C-CCCCccc-cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc-c-H
Confidence 134579999997521 1 1111100 011 126789999999999999998764432 2 4
Q ss_pred HHHHHHHHHhcCccEEEee--cccce--EEEEEE
Q 038592 415 DMLIQEFRDVFQELYEIDV--GNEEN--FVLIAT 444 (478)
Q Consensus 415 ~~v~~~l~~vF~~v~~~~v--~~~~N--~Vl~a~ 444 (478)
..++..++..|..+..++. +.+.| .+++|.
T Consensus 153 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (188)
T TIGR00438 153 DEYLNELRKLFEKVKVTKPQASRKRSAEVYIVAK 186 (188)
T ss_pred HHHHHHHHhhhceEEEeCCCCCCcccceEEEEEe
Confidence 4677888888876665553 33333 445554
No 81
>PRK14967 putative methyltransferase; Provisional
Probab=98.53 E-value=5.3e-07 Score=87.51 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=82.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.+|+|.|.++..+......+|++||+++.+++.|++.+... ..+++++.+|..+++
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~-~~~~~~~~~d~~~~~------------------ 97 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA-GVDVDVRRGDWARAV------------------ 97 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-CCeeEEEECchhhhc------------------
Confidence 3699999999999998887653349999999999999999876422 125789999987653
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCC-CCCCCCC--CC-------CCC-CChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSG-DARNGTS--AP-------PVE-FVRKDVLLAARLILSDFGIFVMNVIPPNR 411 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~-d~~~g~s--~P-------p~~-f~~~efl~~~~~~L~~~Gilv~N~~~~~~ 411 (478)
...+||+|+.|.--. ....+.. .| ... -.-..+++.+.+.|++||.+++-.....
T Consensus 98 -------------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~- 163 (223)
T PRK14967 98 -------------EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS- 163 (223)
T ss_pred -------------cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc-
Confidence 345799999974110 0000000 00 000 0125688899999999999986443321
Q ss_pred hHHHHHHHHHHH
Q 038592 412 SFYDMLIQEFRD 423 (478)
Q Consensus 412 ~~~~~v~~~l~~ 423 (478)
. ...+++.+++
T Consensus 164 ~-~~~~~~~l~~ 174 (223)
T PRK14967 164 G-VERTLTRLSE 174 (223)
T ss_pred C-HHHHHHHHHH
Confidence 1 2334555543
No 82
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.53 E-value=3.1e-07 Score=92.32 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=75.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||+|.|+++.++.+..+++|++|.++++-.+.|++...-. ..+++++..+|-.++
T Consensus 63 G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~------------------ 124 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL------------------ 124 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------------------
T ss_pred CCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc------------------
Confidence 5699999999999999999988999999999999999999876422 246899999997654
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC---ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF---VRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f---~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..+||.|+. + +|. +++ .-+.|++.+.+.|+|||.+++..+..
T Consensus 125 ---------------~~~fD~IvS-i-------~~~---Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 125 ---------------PGKFDRIVS-I-------EMF---EHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -----------------S-SEEEE-E-------SEG---GGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred ---------------CCCCCEEEE-E-------ech---hhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 228999886 1 111 122 23789999999999999999987665
No 83
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.53 E-value=9.6e-07 Score=71.54 Aligned_cols=103 Identities=30% Similarity=0.344 Sum_probs=78.0
Q ss_pred eEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccc
Q 038592 265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSL 344 (478)
Q Consensus 265 ~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~ 344 (478)
+++.+|+|.|.+...+......++.++|+++..++.+++........+++++.+|..++...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE------------------ 62 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc------------------
Confidence 47999999999888877744689999999999999998433222346799999999887531
Q ss_pred cCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 345 KDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 345 ~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
...+||+|+++..... . .-....+++.+.+.|+++|.+++-
T Consensus 63 -----------~~~~~d~i~~~~~~~~-------~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 -----------ADESFDVIISDPPLHH-------L--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -----------cCCceEEEEEccceee-------h--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 3467999999642211 0 114588999999999999999864
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.52 E-value=1.2e-06 Score=91.92 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=93.7
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+.+|.||+|.|.....+.+. ++..+++||+++.+++.|.+......-++++++.+|+..+++..
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~-------------- 188 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELL-------------- 188 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhC--------------
Confidence 468999999999988777765 47899999999999999987764433357999999999876431
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
++..+|.|++-. +++... .+...+..+.|+..+++.|++||.+.+..-. ......++..+
T Consensus 189 --------------~~~s~D~I~lnF--PdPW~K--krHRRlv~~~fL~e~~RvLkpGG~l~l~TD~--~~y~~~~~e~~ 248 (390)
T PRK14121 189 --------------PSNSVEKIFVHF--PVPWDK--KPHRRVISEDFLNEALRVLKPGGTLELRTDS--ELYFEFSLELF 248 (390)
T ss_pred --------------CCCceeEEEEeC--CCCccc--cchhhccHHHHHHHHHHHcCCCcEEEEEEEC--HHHHHHHHHHH
Confidence 457899999843 232210 1223467799999999999999999875543 34445555555
Q ss_pred HHh
Q 038592 422 RDV 424 (478)
Q Consensus 422 ~~v 424 (478)
.+.
T Consensus 249 ~~~ 251 (390)
T PRK14121 249 LKL 251 (390)
T ss_pred HhC
Confidence 443
No 85
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.51 E-value=7.7e-07 Score=88.32 Aligned_cols=127 Identities=18% Similarity=0.216 Sum_probs=86.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.+|+|.|.++..+.+.. +.+|++||+|+..++.|++.+... .++++.+|..+++.+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~---~~~~~~~D~~~~l~~~-------------- 149 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA---GGTVHEGDLYDALPTA-------------- 149 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCEEEEeechhhcchh--------------
Confidence 4589999999999998888765 579999999999999999887532 2578999988776331
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC--------CC--------ChHHHHHHHHHccCcCcEEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV--------EF--------VRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~--------~f--------~~~efl~~~~~~L~~~Gilv~N 405 (478)
...+||+|++|.---........+|. .+ +-..++..+.++|+|||.+++-
T Consensus 150 --------------~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 150 --------------LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred --------------cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13469999997521110000000111 11 1257888899999999999976
Q ss_pred eCCCCchHHHHHHHHHHH
Q 038592 406 VIPPNRSFYDMLIQEFRD 423 (478)
Q Consensus 406 ~~~~~~~~~~~v~~~l~~ 423 (478)
..... ...+...|++
T Consensus 216 ~~~~~---~~~v~~~l~~ 230 (251)
T TIGR03704 216 TSERQ---APLAVEAFAR 230 (251)
T ss_pred ECcch---HHHHHHHHHH
Confidence 54332 3455666655
No 86
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.50 E-value=1.6e-06 Score=81.90 Aligned_cols=125 Identities=22% Similarity=0.243 Sum_probs=92.0
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
...++.||+|+|+++-.+... +..+|+++|-|++.++..++...--.-++++++.+||-+++.+
T Consensus 35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~--------------- 99 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPD--------------- 99 (187)
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcC---------------
Confidence 458999999999999877754 4689999999999999887653211146899999999999853
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
.. .+|+||+- .+ . --++.|+.+...|++||.+|+|.+..... ...++.+
T Consensus 100 --------------~~-~~daiFIG--Gg---~---------~i~~ile~~~~~l~~ggrlV~naitlE~~--~~a~~~~ 148 (187)
T COG2242 100 --------------LP-SPDAIFIG--GG---G---------NIEEILEAAWERLKPGGRLVANAITLETL--AKALEAL 148 (187)
T ss_pred --------------CC-CCCEEEEC--CC---C---------CHHHHHHHHHHHcCcCCeEEEEeecHHHH--HHHHHHH
Confidence 22 79999992 11 1 23789999999999999999999876332 2345555
Q ss_pred HHh-cCccEEEee
Q 038592 422 RDV-FQELYEIDV 433 (478)
Q Consensus 422 ~~v-F~~v~~~~v 433 (478)
++. |.++..+.+
T Consensus 149 ~~~g~~ei~~v~i 161 (187)
T COG2242 149 EQLGGREIVQVQI 161 (187)
T ss_pred HHcCCceEEEEEe
Confidence 554 214544443
No 87
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.50 E-value=6e-07 Score=90.15 Aligned_cols=125 Identities=20% Similarity=0.241 Sum_probs=92.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||||.|+++.++.+..+++|++|.++++..+.|++-+.... ..++++...|-.++
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~------------------ 134 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF------------------ 134 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc------------------
Confidence 57999999999999999999999999999999999999998664322 25899999998877
Q ss_pred ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-CchHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-NRSFYDMLIQ 419 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-~~~~~~~v~~ 419 (478)
.++||-|+. .++.- . | +. .-+.|++.+++.|+|||.+++..+.. +.......--
T Consensus 135 ---------------~e~fDrIvSvgmfEh--v-g----~~--~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~ 190 (283)
T COG2230 135 ---------------EEPFDRIVSVGMFEH--V-G----KE--NYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDF 190 (283)
T ss_pred ---------------ccccceeeehhhHHH--h-C----cc--cHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHH
Confidence 233999885 22211 0 1 11 24889999999999999999987665 3222122233
Q ss_pred HHHHhcCccE
Q 038592 420 EFRDVFQELY 429 (478)
Q Consensus 420 ~l~~vF~~v~ 429 (478)
..+-+||.-+
T Consensus 191 i~~yiFPgG~ 200 (283)
T COG2230 191 IDKYIFPGGE 200 (283)
T ss_pred HHHhCCCCCc
Confidence 4456788543
No 88
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.49 E-value=6.1e-07 Score=88.88 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH-HHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF-LEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~-l~~~~~~~~~~~~~~ 338 (478)
..+||..|.|.|+|+.+|.+.. ..+|...|+.++-.+.|++.|... .+.++++++.|..+- ..+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~------------ 108 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE------------ 108 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST------------
T ss_pred CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc------------
Confidence 4699999999999999999874 479999999999999999887422 246899999997531 110
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHcc-CcCcEEEEEeCCCCchHHHHH
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLIL-SDFGIFVMNVIPPNRSFYDML 417 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L-~~~Gilv~N~~~~~~~~~~~v 417 (478)
.....+|+||+|+-++ .+.+..+++.| ++||.+++-+.+- +.....
T Consensus 109 ----------------~~~~~~DavfLDlp~P---------------w~~i~~~~~~L~~~gG~i~~fsP~i--eQv~~~ 155 (247)
T PF08704_consen 109 ----------------ELESDFDAVFLDLPDP---------------WEAIPHAKRALKKPGGRICCFSPCI--EQVQKT 155 (247)
T ss_dssp ----------------T-TTSEEEEEEESSSG---------------GGGHHHHHHHE-EEEEEEEEEESSH--HHHHHH
T ss_pred ----------------cccCcccEEEEeCCCH---------------HHHHHHHHHHHhcCCceEEEECCCH--HHHHHH
Confidence 1246799999998442 45889999999 8999999776554 556667
Q ss_pred HHHHHHh-cCccE
Q 038592 418 IQEFRDV-FQELY 429 (478)
Q Consensus 418 ~~~l~~v-F~~v~ 429 (478)
+..|++. |.++.
T Consensus 156 ~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 156 VEALREHGFTDIE 168 (247)
T ss_dssp HHHHHHTTEEEEE
T ss_pred HHHHHHCCCeeeE
Confidence 7778773 76543
No 89
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=2.9e-06 Score=90.43 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=91.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|+.+..+.+.. +.+|+++|+++.+++.+++.+... +-+++++.+|+.+....
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-g~~~~~~~~D~~~~~~~--------------- 308 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-GLKATVIVGDARDPAQW--------------- 308 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc-CCCeEEEEcCcccchhh---------------
Confidence 4689999999999998888876 479999999999999999876422 12368999999764211
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCCC-------------ChHHHHHHHHHccCcCcEEEEEeC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVEF-------------VRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
....+||.|++|...+. .|+ .--|... ....+|..+.+.|+|||.+++.+.
T Consensus 309 -------------~~~~~fD~Vl~D~Pcs~--~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 -------------WDGQPFDRILLDAPCSA--TGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred -------------cccCCCCEEEECCCCCc--ccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 02457999999985432 121 1111110 134789999999999999998776
Q ss_pred CCCchHHHHHHHHHHHhcCc
Q 038592 408 PPNRSFYDMLIQEFRDVFQE 427 (478)
Q Consensus 408 ~~~~~~~~~v~~~l~~vF~~ 427 (478)
+-....-..++..+.+-.+.
T Consensus 374 s~~~~Ene~~v~~~l~~~~~ 393 (427)
T PRK10901 374 SILPEENEQQIKAFLARHPD 393 (427)
T ss_pred CCChhhCHHHHHHHHHhCCC
Confidence 55333333344444443333
No 90
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.48 E-value=5.7e-06 Score=78.83 Aligned_cols=100 Identities=23% Similarity=0.210 Sum_probs=78.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+.+||.+|+|.|.++..+.+..+ .+++++|+++.+++.+++.+. ...+++++.+|..++.
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~---------------- 101 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALP---------------- 101 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCC----------------
Confidence 57999999999998888777654 699999999999999999876 3567899999997652
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+||+|++... +...+ .-..+++.+++.|+|||.+++
T Consensus 102 --------------~~~~~~D~i~~~~~-------~~~~~---~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 102 --------------FEDNSFDAVTIAFG-------LRNVT---DIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred --------------CCCCcEEEEEEeee-------eCCcc---cHHHHHHHHHHHcCCCcEEEE
Confidence 13457999987321 11111 136799999999999999986
No 91
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.47 E-value=1.7e-06 Score=90.90 Aligned_cols=114 Identities=25% Similarity=0.255 Sum_probs=85.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
.++||-+=+=+|+.+.+.... ++ +|+.||++...+++|++.+.+.. ..+.+++++|+++|+++..+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh----------
Confidence 479999999999987655543 55 99999999999999999997753 46799999999999998643
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC--h---HHHHHHHHHccCcCcEEEEEeCCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV--R---KDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~--~---~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
.+.+||+||+|-.+=-.. +.... . ...+..+.++|+|||++++-..++
T Consensus 287 ----------------~g~~fDlIilDPPsF~r~------k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 287 ----------------RGEKFDLIILDPPSFARS------KKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ----------------cCCcccEEEECCcccccC------cccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 567999999984221000 11111 1 455677889999999998744444
No 92
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.47 E-value=2.8e-06 Score=84.05 Aligned_cols=109 Identities=19% Similarity=0.197 Sum_probs=75.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCC-CCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDG-EFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d-~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..+.+....+|+++|+||.+++.|++.+....- .++.+..
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~------------------------ 175 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ------------------------ 175 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc------------------------
Confidence 579999999999999887765445799999999999999988653211 1111110
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
.+.+||+|+.++... .-..++..+.+.|+|||.+++.-.... ....+...+
T Consensus 176 --------------~~~~fD~Vvani~~~-------------~~~~l~~~~~~~LkpgG~lilsgi~~~--~~~~v~~~l 226 (250)
T PRK00517 176 --------------GDLKADVIVANILAN-------------PLLELAPDLARLLKPGGRLILSGILEE--QADEVLEAY 226 (250)
T ss_pred --------------CCCCcCEEEEcCcHH-------------HHHHHHHHHHHhcCCCcEEEEEECcHh--hHHHHHHHH
Confidence 122699999864211 125688999999999999998644332 234556666
Q ss_pred HHh
Q 038592 422 RDV 424 (478)
Q Consensus 422 ~~v 424 (478)
++.
T Consensus 227 ~~~ 229 (250)
T PRK00517 227 EEA 229 (250)
T ss_pred HHC
Confidence 665
No 93
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.46 E-value=2.9e-06 Score=90.61 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=95.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|+.+..+.... ..+|+++|+++..++.+++.+....-.+++++.+|+.++.....
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~------------ 320 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP------------ 320 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc------------
Confidence 4689999999999998888765 36999999999999999877542222359999999987632100
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-C------------ChHHHHHHHHHccCcCcEEEEEeC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-F------------VRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f------------~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
....+||.|++|+..+- .+.+.--|.. . +..++|.++.+.|+|||.+++.+.
T Consensus 321 --------------~~~~~fD~Vl~DaPCSg-~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 321 --------------QWRGYFDRILLDAPCSG-LGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred --------------cccccCCEEEEeCCCCc-ccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 02457999999986432 1111111111 0 147889999999999999998776
Q ss_pred CCCchHHHHHHHHHHHhcCcc
Q 038592 408 PPNRSFYDMLIQEFRDVFQEL 428 (478)
Q Consensus 408 ~~~~~~~~~v~~~l~~vF~~v 428 (478)
+-.++--..++..+.+-++..
T Consensus 386 si~~~Ene~~v~~~l~~~~~~ 406 (434)
T PRK14901 386 TLHPAENEAQIEQFLARHPDW 406 (434)
T ss_pred CCChhhHHHHHHHHHHhCCCc
Confidence 665544455555555555543
No 94
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.46 E-value=3.2e-06 Score=80.62 Aligned_cols=140 Identities=17% Similarity=0.238 Sum_probs=96.7
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
.++|.+|+|.|.++..|..+ --+++++|+++.-++.|++..+ .-+++++++.|--++.
T Consensus 45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~------------------- 102 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW------------------- 102 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT---------------------
T ss_pred ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC-------------------
Confidence 58999999999999988876 3599999999999999999876 3478999999987763
Q ss_pred ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-----HHHHHHHHHccCcCcEEEEEeCCC-------Cc
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-----KDVLLAARLILSDFGIFVMNVIPP-------NR 411 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-----~efl~~~~~~L~~~Gilv~N~~~~-------~~ 411 (478)
+..+||+|++- . . ..|++ ..++..+...|+|||.+|+--+.. +.
T Consensus 103 ------------P~~~FDLIV~S----E-V-------lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~ 158 (201)
T PF05401_consen 103 ------------PEGRFDLIVLS----E-V-------LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHA 158 (201)
T ss_dssp -------------SS-EEEEEEE----S---------GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S
T ss_pred ------------CCCCeeEEEEe----h-H-------hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcc
Confidence 56789999992 1 1 12332 347888999999999999854422 23
Q ss_pred hHHHHHHHHHHHhcCccEEEeec---ccceEEEEEEcCCCC
Q 038592 412 SFYDMLIQEFRDVFQELYEIDVG---NEENFVLIATGLSIV 449 (478)
Q Consensus 412 ~~~~~v~~~l~~vF~~v~~~~v~---~~~N~Vl~a~~~~~~ 449 (478)
.-.+.|+..|++.|..|-.+.+. ...+.+|....+|..
T Consensus 159 ~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (201)
T PF05401_consen 159 AGAETVLEMLQEHLTEVERVECRGGSPNEDCLLARFRNPVS 199 (201)
T ss_dssp --HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEEEE--SS
T ss_pred cchHHHHHHHHHHhhheeEEEEcCCCCCCceEeeeecCCcC
Confidence 33567888889999887666652 245677777777764
No 95
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.46 E-value=1.4e-06 Score=86.68 Aligned_cols=103 Identities=23% Similarity=0.280 Sum_probs=75.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||+||+|+|.++..+.+.. ..+|++||+++.+++.|++.+....-++++++.+|..+.-
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~---------------- 141 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP---------------- 141 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC----------------
Confidence 5699999999998877666654 3589999999999999998753222247889999964420
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
..+..||+|+.+..- ...| -...+++.+.+.|+|||.|++.
T Consensus 142 --------------~~~~~fD~Vi~~~v~-------~~~~---d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 142 --------------VADNSVDVIISNCVI-------NLSP---DKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred --------------CCCCceeEEEEcCcc-------cCCC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 134579999975210 0011 1367999999999999999873
No 96
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.45 E-value=3.7e-06 Score=88.87 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=94.4
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|+|.++..+... ++.+|+++|+|+.+++.|++..... +.+++++.+|..+....
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~-g~rV~fi~gDl~e~~l~--------------- 315 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL-GARVEFAHGSWFDTDMP--------------- 315 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCcEEEEEcchhccccc---------------
Confidence 358999999999999888765 4789999999999999999876432 23799999997653100
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCC-CC------CCCCCCCC--------hHHHHHHHHHccCcCcEEEEEe
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN-GT------SAPPVEFV--------RKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~-g~------s~Pp~~f~--------~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||+|+.+..-..... .+ .-|...+. -..+++.+.+.|+|+|.+++-+
T Consensus 316 --------------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 316 --------------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred --------------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2346999999652110000 00 01111111 2467777788999999998766
Q ss_pred CCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEE
Q 038592 407 IPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIAT 444 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~ 444 (478)
.... .+.+.+.+++. |..+...+--.+..+++++.
T Consensus 382 G~~Q---~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 382 GFDQ---GAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred CccH---HHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 4432 33445555543 54443333223345666664
No 97
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.43 E-value=1.6e-06 Score=93.26 Aligned_cols=106 Identities=20% Similarity=0.154 Sum_probs=80.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.++..|.+.++.+|++||+++.+++.|++... ....+++++++|..+..
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~-~~~~~v~~~~~d~~~~~------------------ 327 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI-GRKCSVEFEVADCTKKT------------------ 327 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh-cCCCceEEEEcCcccCC------------------
Confidence 56999999999999998988778899999999999999987653 22357899999976531
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
.++.+||+|+..- ....+ + -...+++.+++.|+|||.+++.....
T Consensus 328 ------------~~~~~fD~I~s~~----~l~h~---~---d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 328 ------------YPDNSFDVIYSRD----TILHI---Q---DKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred ------------CCCCCEEEEEECC----ccccc---C---CHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 1346799999821 11011 1 23689999999999999999865443
No 98
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.43 E-value=1.6e-06 Score=80.40 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=76.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.++..+.+. ..+|++||+|+.+++.+++.+.- .++++++.+|+.++..
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~----------------- 73 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDL----------------- 73 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCc-----------------
Confidence 458999999999999999887 67999999999999999998853 4689999999998731
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHc--cCcCcEEEEEeC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLI--LSDFGIFVMNVI 407 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~--L~~~Gilv~N~~ 407 (478)
.+..||.|+.+ ||-+. +.+.+..+.+. +.++|++++...
T Consensus 74 -------------~~~~~d~vi~n------------~Py~~-~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 74 -------------PKLQPYKVVGN------------LPYNI-STPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred -------------cccCCCEEEEC------------CCccc-HHHHHHHHHhcCCCcceEEEEEEHH
Confidence 23368999884 34443 34555555543 347899998764
No 99
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.42 E-value=1.8e-06 Score=84.83 Aligned_cols=101 Identities=17% Similarity=0.174 Sum_probs=76.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.+|+|.|.++..+.+. +.+|+++|+++.+++.|++.+. ...++++|+.+.-
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~------------------ 98 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLP------------------ 98 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCc------------------
Confidence 578999999999999888764 6799999999999999998753 2457788875431
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..+.+||+|+....-. .++ .-..++..+.+.|+|||.+++.....
T Consensus 99 ------------~~~~~fD~V~s~~~l~------~~~----d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 99 ------------LATATFDLAWSNLAVQ------WCG----NLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred ------------CCCCcEEEEEECchhh------hcC----CHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 1356799999742110 011 13689999999999999999876554
No 100
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.42 E-value=7.8e-07 Score=85.72 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=76.5
Q ss_pred CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
++||.||+|.|.++..+.+.. +.+|+++|+++.+++.|++.+.-. .+++++++.+|..+..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~----------------- 63 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP----------------- 63 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-----------------
Confidence 379999999999888888765 689999999999999999876422 2467899998864321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||+|+.-- . +.+.+ -...+|+.+++.|+|||.+++.-
T Consensus 64 --------------~~~~fD~I~~~~--~-----l~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 64 --------------FPDTYDLVFGFE--V-----IHHIK---DKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred --------------CCCCCCEeehHH--H-----HHhCC---CHHHHHHHHHHHcCCCCEEEEEE
Confidence 134799998621 0 11111 13789999999999999998754
No 101
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.40 E-value=4.2e-06 Score=89.09 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=93.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|+.+..+.+.. +.+|+++|+++..++.+++.+.... +.++.+..+|+......
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~-------------- 304 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW-------------- 304 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc--------------
Confidence 4699999999999998888876 4799999999999999987753211 12334456665432100
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPPVEF-------------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....+||.|++|+..+.. |+ .--|.-. +..++|..+.+.|+|||.+++.+
T Consensus 305 --------------~~~~~fD~VllDaPcSg~--G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 305 --------------AENEQFDRILLDAPCSAT--GVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred --------------ccccccCEEEEcCCCCCC--cccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 024579999999854421 22 1112210 24789999999999999999988
Q ss_pred CCCCchHHHHHHHHHHHhcCcc
Q 038592 407 IPPNRSFYDMLIQEFRDVFQEL 428 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~v 428 (478)
.+-+++--..+++.+.+-++..
T Consensus 369 cs~~~~Ene~~v~~~l~~~~~~ 390 (426)
T TIGR00563 369 CSVLPEENSEQIKAFLQEHPDF 390 (426)
T ss_pred CCCChhhCHHHHHHHHHhCCCC
Confidence 8775554555666666666653
No 102
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.40 E-value=1.9e-06 Score=88.59 Aligned_cols=98 Identities=19% Similarity=0.178 Sum_probs=73.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.||+|.|.++..+.+..+ ..|++||+++.+++.|++.+....-++++++.+|+.+.+.+
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-------------- 146 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-------------- 146 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc--------------
Confidence 46999999999999988887653 47999999999999999865432235689999998766422
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...||+|+++.. + .+....+.+.|++||.+++.+
T Consensus 147 ----------------~~~fD~Ii~~~g-------~---------~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 ----------------FAPYDVIFVTVG-------V---------DEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ----------------cCCccEEEECCc-------h---------HHhHHHHHHhcCCCCEEEEEe
Confidence 246999999631 1 112334677899999988754
No 103
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.39 E-value=2.5e-06 Score=89.70 Aligned_cols=102 Identities=21% Similarity=0.337 Sum_probs=77.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.++.++.+.++.+|++||+++++++.|++... +..+++..+|..+.
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~---~l~v~~~~~D~~~l------------------- 225 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA---GLPVEIRLQDYRDL------------------- 225 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---cCeEEEEECchhhc-------------------
Confidence 46999999999999999988778899999999999999998763 23478888886432
Q ss_pred cccCCCccCCCCCCCCceeEEEEe-CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVD-LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivD-v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..+||+|+.- ++. . + ++. .-..+++.+++.|+|||.+++.....
T Consensus 226 --------------~~~fD~Ivs~~~~e--h---v--g~~--~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 226 --------------NGQFDRIVSVGMFE--H---V--GPK--NYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred --------------CCCCCEEEEeCchh--h---C--ChH--HHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 2469999751 110 0 0 011 12579999999999999999876543
No 104
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.39 E-value=1.3e-06 Score=84.81 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ 330 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~ 330 (478)
..+||++|+|.|.-+.+|+++ +.+|++||++|..++.|.+.-++. ...+++++++|..++-..
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---- 109 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA---- 109 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc----
Confidence 469999999999999999875 889999999999999875544432 235788999999876211
Q ss_pred hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
...+||.|+--.. +.+.|+. ....+++.++++|+|||.+++
T Consensus 110 -------------------------~~~~fD~i~D~~~-------~~~l~~~-~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 110 -------------------------DLGPVDAVYDRAA-------LIALPEE-MRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred -------------------------cCCCcCEEEechh-------hccCCHH-HHHHHHHHHHHHcCCCCeEEE
Confidence 1346888854110 1112222 346799999999999996443
No 105
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.38 E-value=3.1e-08 Score=83.27 Aligned_cols=95 Identities=25% Similarity=0.330 Sum_probs=57.4
Q ss_pred EEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCC---CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 267 LCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDG---EFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 267 LvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d---~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
|.||+|.|.+...+.+.. ..+++++|++|.+++.|++.+.-... .++++...|..+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY------------------- 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-------------------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-------------------
Confidence 689999999998888875 68999999999999888877643222 2333333333322
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF 402 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gil 402 (478)
...++||+|+.= +. +..-+ .-.++++++++.|+|||+|
T Consensus 62 ------------~~~~~fD~V~~~--~v-----l~~l~---~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 62 ------------DPPESFDLVVAS--NV-----LHHLE---DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------------CC----SEEEEE---T-----TS--S----HHHHHHHHTTT-TSS-EE
T ss_pred ------------ccccccceehhh--hh-----Hhhhh---hHHHHHHHHHHHcCCCCCC
Confidence 123589999982 11 11111 3378999999999999986
No 106
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.38 E-value=2.6e-07 Score=91.11 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=73.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCC----CeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGE----FLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~----rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
..+||.+|||||.|+.-|.+. +..|+++|+.++++++|+++-... .+. |++..+.|+-.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~-------------- 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEG-------------- 154 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhh--------------
Confidence 367999999999999888764 799999999999999999994332 111 23333333322
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...+||+|++- +.. ++. .-++|+..+.++|+|+|.+++-...|
T Consensus 155 -------------------~~~~fDaVvcs----evl-------eHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 155 -------------------LTGKFDAVVCS----EVL-------EHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred -------------------cccccceeeeH----HHH-------HHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 23459999981 110 111 12789999999999999999887776
No 107
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.37 E-value=5.2e-06 Score=79.01 Aligned_cols=107 Identities=22% Similarity=0.114 Sum_probs=78.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+++|+|+++..+......+|++||+|+..++.+++.+.... .++++++.+|+.++++....
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~------------ 117 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK------------ 117 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc------------
Confidence 46899999999999988887644599999999999999998764322 34799999999999865311
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-CChHHHHHHHHH--ccCcCcEEEEEeC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-FVRKDVLLAARL--ILSDFGIFVMNVI 407 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f~~~efl~~~~~--~L~~~Gilv~N~~ 407 (478)
....||+|++|- |-. -...+.++.+.+ .|+++|++++-..
T Consensus 118 --------------~~~~~dvv~~DP------------Py~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 118 --------------KPTFDNVIYLDP------------PFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred --------------cCCCceEEEECc------------CCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 223589999963 211 123455555544 6899999987544
No 108
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.37 E-value=2.9e-06 Score=81.69 Aligned_cols=103 Identities=25% Similarity=0.262 Sum_probs=79.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+||.+|+|.|.++..+.... ..+++++|+++.+++.|++.+... .+++++++.+|..+..
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--------------- 116 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--------------- 116 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC---------------
Confidence 4699999999999998888876 489999999999999999988532 2467899999986642
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
.....||+|++...-. ..+ -...+|+.+.+.|++||.+++.
T Consensus 117 ---------------~~~~~~D~I~~~~~l~-------~~~---~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 117 ---------------FPDNSFDAVTIAFGLR-------NVP---DIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ---------------CCCCCccEEEEecccc-------cCC---CHHHHHHHHHHhccCCcEEEEE
Confidence 1345799998742111 111 2368999999999999988764
No 109
>PTZ00146 fibrillarin; Provisional
Probab=98.36 E-value=1.1e-05 Score=81.63 Aligned_cols=140 Identities=19% Similarity=0.229 Sum_probs=92.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChH----HHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEV----VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~----Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
..+||.+|+|.|.++..+.... ...|.+||+++. ++++|++. +++..+++|+..-. ...
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------~NI~~I~~Da~~p~-~y~-------- 197 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------PNIVPIIEDARYPQ-KYR-------- 197 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------CCCEEEECCccChh-hhh--------
Confidence 3589999999999999999986 369999999997 44555432 56899999986421 100
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC------C
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP------N 410 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~------~ 410 (478)
.....+|+|++|+... . ....++.++++.|+|+|.|++-+-.+ +
T Consensus 198 ------------------~~~~~vDvV~~Dva~p----------d--q~~il~~na~r~LKpGG~~vI~ika~~id~g~~ 247 (293)
T PTZ00146 198 ------------------MLVPMVDVIFADVAQP----------D--QARIVALNAQYFLKNGGHFIISIKANCIDSTAK 247 (293)
T ss_pred ------------------cccCCCCEEEEeCCCc----------c--hHHHHHHHHHHhccCCCEEEEEEeccccccCCC
Confidence 0234699999997421 1 12456678999999999999843222 1
Q ss_pred c-hHHHHHHHHHHHh-cCccEEEeec--ccceEEEEEEcCC
Q 038592 411 R-SFYDMLIQEFRDV-FQELYEIDVG--NEENFVLIATGLS 447 (478)
Q Consensus 411 ~-~~~~~v~~~l~~v-F~~v~~~~v~--~~~N~Vl~a~~~~ 447 (478)
+ +.+..-++.|++. |..+-.+.++ +....++++...+
T Consensus 248 pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~~ 288 (293)
T PTZ00146 248 PEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRP 288 (293)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEcC
Confidence 1 2233335778887 8865555543 3345556655433
No 110
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.36 E-value=2e-06 Score=86.84 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=74.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.+|+|.|..+.+|.+. +.+|++||+++.+++.|++..... .-++++.+.|..+.-
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~-~l~v~~~~~D~~~~~------------------ 180 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKE-NLNIRTGLYDINSAS------------------ 180 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHc-CCceEEEEechhccc------------------
Confidence 469999999999999998875 689999999999999998775432 225788888865431
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
..++||+|+.-..- +..++. .-..+++.+++.|+|||.+++
T Consensus 181 -------------~~~~fD~I~~~~vl------~~l~~~--~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 181 -------------IQEEYDFILSTVVL------MFLNRE--RIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred -------------ccCCccEEEEcchh------hhCCHH--HHHHHHHHHHHhcCCCcEEEE
Confidence 24579999973210 001111 236799999999999998655
No 111
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.35 E-value=4.2e-06 Score=81.18 Aligned_cols=106 Identities=20% Similarity=0.213 Sum_probs=80.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.++..+.+. +.+++++|+++.+++.|++.+.... .+++++..|..++...
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~---------------- 110 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESG-LKIDYRQTTAEELAAE---------------- 110 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcC-CceEEEecCHHHhhhh----------------
Confidence 568999999999998888765 6789999999999999998764322 2578888888877532
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...+||+|++.-. +.+-+ -..++++.+.+.|++||.+++....+
T Consensus 111 -------------~~~~fD~Ii~~~~-------l~~~~---~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 111 -------------HPGQFDVVTCMEM-------LEHVP---DPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred -------------cCCCccEEEEhhH-------hhccC---CHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 3467999998321 00011 13678999999999999999877654
No 112
>PRK08317 hypothetical protein; Provisional
Probab=98.35 E-value=7.5e-06 Score=78.43 Aligned_cols=103 Identities=23% Similarity=0.208 Sum_probs=77.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+|+|.|.++..+.... ..+++++|+++.+++.|++... ...++++++.+|...+-
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~~---------------- 82 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGLP---------------- 82 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccCC----------------
Confidence 5799999999999998888765 4799999999999999998732 12457889988875431
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
.....||+|+....-. .+ + -...+++.+++.|+|||.+++-.
T Consensus 83 --------------~~~~~~D~v~~~~~~~----~~---~---~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 83 --------------FPDGSFDAVRSDRVLQ----HL---E---DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --------------CCCCCceEEEEechhh----cc---C---CHHHHHHHHHHHhcCCcEEEEEe
Confidence 1346799999853110 01 1 13679999999999999988643
No 113
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.32 E-value=4.5e-06 Score=86.41 Aligned_cols=99 Identities=17% Similarity=0.015 Sum_probs=75.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||+|+|.++..+.+.. +.++++||+++.+++.|++.+. .++++++.+|+.+.-
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp----------------- 173 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLP----------------- 173 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCC-----------------
Confidence 4699999999999888777765 5799999999999999998764 346889999986531
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
..+..||+|+... . +..-+ -....++.+++.|+|||.+++
T Consensus 174 -------------~~~~sFDvVIs~~----~---L~~~~---d~~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 174 -------------FPTDYADRYVSAG----S---IEYWP---DPQRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred -------------CCCCceeEEEEcC----h---hhhCC---CHHHHHHHHHHhcCCCcEEEE
Confidence 1356799998821 0 10011 125789999999999999876
No 114
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=9.6e-06 Score=81.95 Aligned_cols=127 Identities=20% Similarity=0.247 Sum_probs=91.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|||.|.++..|.+.. ..+|+.||+|..-++.||+......-++..+..+|..+=+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v----------------- 221 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV----------------- 221 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-----------------
Confidence 3499999999999999999886 6899999999999999999875433233367777765432
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE--EeCCCCchHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM--NVIPPNRSFYDMLIQ 419 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~--N~~~~~~~~~~~v~~ 419 (478)
..+||.||..- +- ..|.. -..-..++++..++++|++||-|-+ | +... .-.
T Consensus 222 ---------------~~kfd~IisNP--Pf-h~G~~--v~~~~~~~~i~~A~~~L~~gGeL~iVan---~~l~----y~~ 274 (300)
T COG2813 222 ---------------EGKFDLIISNP--PF-HAGKA--VVHSLAQEIIAAAARHLKPGGELWIVAN---RHLP----YEK 274 (300)
T ss_pred ---------------cccccEEEeCC--Cc-cCCcc--hhHHHHHHHHHHHHHhhccCCEEEEEEc---CCCC----hHH
Confidence 23899999942 11 11111 0112345999999999999997643 5 4333 245
Q ss_pred HHHHhcCccEEEee
Q 038592 420 EFRDVFQELYEIDV 433 (478)
Q Consensus 420 ~l~~vF~~v~~~~v 433 (478)
.|+++|.++..+.-
T Consensus 275 ~L~~~Fg~v~~la~ 288 (300)
T COG2813 275 KLKELFGNVEVLAK 288 (300)
T ss_pred HHHHhcCCEEEEEe
Confidence 78999998887763
No 115
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=8.1e-06 Score=82.39 Aligned_cols=146 Identities=21% Similarity=0.187 Sum_probs=91.2
Q ss_pred eEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 265 KALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 265 ~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
+||.||+|+|+++..+.+.. ..+|+++||+|.-+++|++......-.++.++.+|..+-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-------------------- 172 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-------------------- 172 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc--------------------
Confidence 89999999999999999886 579999999999999999775322113455555544432
Q ss_pred ccCCCccCCCCCCCCceeEEEEeCC---CCCCC-----------CCCCCCCCC-CChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMVDLD---SGDAR-----------NGTSAPPVE-FVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIivDv~---s~d~~-----------~g~s~Pp~~-f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
-..+||+|+..-- ..+.. ..+.+-+.. -+-..|+..+.+.|+|+|++++-...
T Consensus 173 ------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 173 ------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred ------------cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 2338999998421 00000 000000000 03467889999999999999987765
Q ss_pred CCchHHHHHHHHHHHhc--CccEEEeecccceEEEEEEc
Q 038592 409 PNRSFYDMLIQEFRDVF--QELYEIDVGNEENFVLIATG 445 (478)
Q Consensus 409 ~~~~~~~~v~~~l~~vF--~~v~~~~v~~~~N~Vl~a~~ 445 (478)
...+. +.+.+.+.. ..+...+-..+.+.++.+..
T Consensus 241 ~q~~~---v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 241 TQGEA---VKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred CcHHH---HHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 54433 333344333 33444444445566666654
No 116
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.32 E-value=2.6e-06 Score=83.19 Aligned_cols=127 Identities=20% Similarity=0.327 Sum_probs=83.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCe----EEEEchHHHHHHHHHhhhcCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFL----QVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl----~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
++.+|.|||-.|.++..++++++ -.|.+||||+..++.|+++..+..+... ...++++..|.-=. .++..+.+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is-~~~~a~~a~ 137 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPIS-QRNEADRAF 137 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccc-ccccccccc
Confidence 78999999999999999999985 6899999999999999998766533211 23345555553111 111112222
Q ss_pred CCCccc---ccCC-------CccCCCCCCCCceeEEEE-------eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCc
Q 038592 338 SFGACS---LKDG-------NFLDNSDRVDNKFDVIMV-------DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFG 400 (478)
Q Consensus 338 ~~~~~~---~~~~-------~~~~~~~~~~~~yDvIiv-------Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~G 400 (478)
+.+.|. ..++ |++ .....+||+|++ -+..+|. |+ ..||+.+.++|.|||
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl---~~~~~~fDiIlcLSiTkWIHLNwgD~--GL---------~~ff~kis~ll~pgG 203 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL---DMIQPEFDIILCLSITKWIHLNWGDD--GL---------RRFFRKISSLLHPGG 203 (288)
T ss_pred cccCCcchhcccccEEEecchhh---hhccccccEEEEEEeeeeEecccccH--HH---------HHHHHHHHHhhCcCc
Confidence 222221 1111 122 135678999996 3333442 33 789999999999999
Q ss_pred EEEE
Q 038592 401 IFVM 404 (478)
Q Consensus 401 ilv~ 404 (478)
+||+
T Consensus 204 iLvv 207 (288)
T KOG2899|consen 204 ILVV 207 (288)
T ss_pred EEEE
Confidence 9996
No 117
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.29 E-value=3.8e-06 Score=80.92 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=84.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+|..||||.|..+..|++.+ +..|+++|-|++|++.|++.. +++++..+|..+|
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w------------------ 87 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTW------------------ 87 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhc------------------
Confidence 6899999999999999999886 689999999999999998874 5789999999999
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
.+....|+|+..+-= .=-|.+ .+.|..+-..|.|||++.+++...
T Consensus 88 -------------~p~~~~dllfaNAvl-------qWlpdH---~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 -------------KPEQPTDLLFANAVL-------QWLPDH---PELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred -------------CCCCccchhhhhhhh-------hhcccc---HHHHHHHHHhhCCCceEEEECCCc
Confidence 256789999875311 112444 789999999999999999999765
No 118
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.28 E-value=3e-06 Score=84.76 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=71.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-C---CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-D---FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~---~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
..+||.+|+|+|.++..|.+.. . ..|+++|+++.+++.|++.+ +++++.++|+.+.-
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp-------------- 146 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLP-------------- 146 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCC--------------
Confidence 4689999999999988887654 2 48999999999999998864 45888999976531
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
..+..||+|+.- ++ | .+++.+++.|+|||.|++-...
T Consensus 147 ----------------~~~~sfD~I~~~-~~---------~-------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 147 ----------------FADQSLDAIIRI-YA---------P-------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ----------------CcCCceeEEEEe-cC---------C-------CCHHHHHhhccCCCEEEEEeCC
Confidence 145689999861 11 1 2457789999999999975443
No 119
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.27 E-value=4.5e-06 Score=79.14 Aligned_cols=109 Identities=26% Similarity=0.332 Sum_probs=80.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..++|.+=+|+|+++......-..+|+.||.|+..++..++.+.. ...++.+++.+|+..++.+...
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~------------ 110 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK------------ 110 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH------------
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc------------
Confidence 469999999999999876665456999999999999999987642 2234799999999999987543
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC--hHHHHHHHH--HccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV--RKDVLLAAR--LILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~--~~efl~~~~--~~L~~~Gilv~N~~~~ 409 (478)
...+||+|++| ||-..- -.+.++.+. ..|+++|++++-....
T Consensus 111 --------------~~~~fDiIflD------------PPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 --------------KGEKFDIIFLD------------PPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --------------CTS-EEEEEE--------------STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred --------------cCCCceEEEEC------------CCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 46789999997 444433 266788777 6899999999877655
No 120
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.27 E-value=2.9e-06 Score=82.59 Aligned_cols=102 Identities=18% Similarity=0.144 Sum_probs=75.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ 330 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~ 330 (478)
..+||++|+|.|.-+.+|.++ +.+|++||++|.-++.|.+.-++. ...+++++++|..++-.+
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~---- 112 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA---- 112 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc----
Confidence 469999999999999999875 889999999999999875544432 246789999999887211
Q ss_pred hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEE
Q 038592 331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF 402 (478)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gil 402 (478)
....||.|+-=. .-+..||. ....+++.+.++|+|||.+
T Consensus 113 -------------------------~~~~fd~v~D~~------~~~~l~~~--~R~~~~~~l~~lL~pgG~~ 151 (218)
T PRK13255 113 -------------------------DLADVDAVYDRA------ALIALPEE--MRERYVQQLAALLPAGCRG 151 (218)
T ss_pred -------------------------cCCCeeEEEehH------hHhhCCHH--HHHHHHHHHHHHcCCCCeE
Confidence 224688887411 01223333 3588999999999999853
No 121
>PLN02672 methionine S-methyltransferase
Probab=98.25 E-value=9.7e-06 Score=94.42 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=86.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC----------------CCCCeEEEEchHHHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE----------------DGEFLQVSVGDAIEFLE 325 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~----------------~d~rl~v~v~Dg~~~l~ 325 (478)
+.+||.+|+|.|.++..|.+.. ..+|++||++|..+++|++..... ..+|++++.+|..+.+.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999998875 579999999999999998775321 12479999999988763
Q ss_pred HHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCC---CCCCCCCCC------C---------CCCCCCh--
Q 038592 326 KLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLD---SGDARNGTS------A---------PPVEFVR-- 385 (478)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~---s~d~~~g~s------~---------Pp~~f~~-- 385 (478)
. ...+||+|+...- .++. ..|+ . |...+..
T Consensus 199 ~-----------------------------~~~~fDlIVSNPPYI~~~e~-~~l~~eV~~~ep~~~~~~~~p~~AL~g~~ 248 (1082)
T PLN02672 199 D-----------------------------NNIELDRIVGCIPQILNPNP-EAMSKLVTENASEEFLYSLSNYCALQGFV 248 (1082)
T ss_pred c-----------------------------cCCceEEEEECCCcCCCcch-hhcChhhhhccccccccccCccccccCCC
Confidence 2 2246999998431 1110 0110 0 1222222
Q ss_pred ---------HHHHHHHHHccCcCcEEEEEeCCCCchH
Q 038592 386 ---------KDVLLAARLILSDFGIFVMNVIPPNRSF 413 (478)
Q Consensus 386 ---------~efl~~~~~~L~~~Gilv~N~~~~~~~~ 413 (478)
...+..+.+.|+|||.+++++.....+.
T Consensus 249 ~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~ 285 (1082)
T PLN02672 249 EDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQA 285 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHH
Confidence 6677888889999999999998775543
No 122
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.23 E-value=3.4e-06 Score=85.65 Aligned_cols=130 Identities=20% Similarity=0.291 Sum_probs=84.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|+|.|+....+.-..+|.++|+||..++.|++...+.. ..+++++ ...+
T Consensus 162 g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~------------------- 220 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSED------------------- 220 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSC-------------------
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecc-------------------
Confidence 46999999999999988776534689999999999999999875432 2355553 1000
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
....+||+|+..+... .-......+.++|+|||.+++-=.-. +..+.+.+.+
T Consensus 221 -------------~~~~~~dlvvANI~~~-------------vL~~l~~~~~~~l~~~G~lIlSGIl~--~~~~~v~~a~ 272 (295)
T PF06325_consen 221 -------------LVEGKFDLVVANILAD-------------VLLELAPDIASLLKPGGYLILSGILE--EQEDEVIEAY 272 (295)
T ss_dssp -------------TCCS-EEEEEEES-HH-------------HHHHHHHHCHHHEEEEEEEEEEEEEG--GGHHHHHHHH
T ss_pred -------------cccccCCEEEECCCHH-------------HHHHHHHHHHHhhCCCCEEEEccccH--HHHHHHHHHH
Confidence 1347899999976331 11456777888999999999733322 2345667777
Q ss_pred HHhcCccEEEeecccceEEEEEE
Q 038592 422 RDVFQELYEIDVGNEENFVLIAT 444 (478)
Q Consensus 422 ~~vF~~v~~~~v~~~~N~Vl~a~ 444 (478)
++= ..........+|+.+..
T Consensus 273 ~~g---~~~~~~~~~~~W~~l~~ 292 (295)
T PF06325_consen 273 KQG---FELVEEREEGEWVALVF 292 (295)
T ss_dssp HTT---EEEEEEEEETTEEEEEE
T ss_pred HCC---CEEEEEEEECCEEEEEE
Confidence 542 22333334456766554
No 123
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.23 E-value=2.1e-05 Score=79.58 Aligned_cols=112 Identities=22% Similarity=0.261 Sum_probs=76.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
.++||-+=+=+|+.+.+....-..+|+.||++...+++|++.+.+.. ..+++++.+|+++|++++.+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----------- 192 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----------- 192 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH-----------
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc-----------
Confidence 47999999999998876554323589999999999999999986542 36899999999999987432
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-Ch---HHHHHHHHHccCcCcEEEEEeCCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VR---KDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~---~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..+||+||+|..+=. +..+ +. .+.+..+.++|+|||++++-..+.
T Consensus 193 ----------------~~~fD~IIlDPPsF~--------k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 193 ----------------GGRFDLIILDPPSFA--------KSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp ----------------TT-EEEEEE--SSEE--------SSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred ----------------CCCCCEEEECCCCCC--------CCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 358999999843210 0111 22 345677788999999988655444
No 124
>PHA03412 putative methyltransferase; Provisional
Probab=98.23 E-value=7.2e-06 Score=80.60 Aligned_cols=105 Identities=16% Similarity=0.157 Sum_probs=71.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC----CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL----DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~----~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
..+||.+|+|+|.++..+.+.. ..+|++||||+.++++|++.+ +++.++.+|...+-
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~-------------- 110 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTE-------------- 110 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhccc--------------
Confidence 4699999999999998887642 469999999999999999764 35889999987641
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCC-CCCC-CCCChHHHHHHHHHccCcCcEEEE
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGT-SAPP-VEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~-s~Pp-~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
...+||+||.+.-=....... ...+ .......+++.+.+++++|+ +|+
T Consensus 111 -----------------~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 111 -----------------FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred -----------------ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 235799999954111000000 0001 11345668888888556555 443
No 125
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.23 E-value=9.8e-06 Score=77.88 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=79.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.+|+|.|.++..+.+. ..+++++|+++.+++.|++.+......++++..+|+.++..+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------------- 108 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK---------------- 108 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC----------------
Confidence 579999999999988877664 467999999999999999877532222688899998887422
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...+||+|++.-.-. .+ + -...+++.+++.|+++|.+++....+
T Consensus 109 -------------~~~~~D~i~~~~~l~----~~---~---~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 109 -------------GAKSFDVVTCMEVLE----HV---P---DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -------------CCCCccEEEehhHHH----hC---C---CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 236799999831100 01 1 12679999999999999998766544
No 126
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.22 E-value=2.6e-06 Score=85.19 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=36.1
Q ss_pred CCCeEEEEeCchh----HHHHHHHhhC------CCEEEEEECChHHHHHHHHh
Q 038592 262 FRPKALCVGVGGG----ALVSFLRTQL------DFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 262 ~~~~VLvIGlGgG----~L~~~L~~~~------~~~V~~VEiDp~Vl~vA~~~ 304 (478)
.+.+|+.+|||+| ++++.|.+.. +.+|+++|+|+.+++.|++-
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 3579999999999 4787777753 36999999999999999873
No 127
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.22 E-value=1.1e-05 Score=85.81 Aligned_cols=102 Identities=22% Similarity=0.148 Sum_probs=77.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.+|+|.|.++..+.+. ..+|++||+++.+++.|++.+....-.+++++.+|+.+++.+...
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~------------- 358 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW------------- 358 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh-------------
Confidence 468999999999999888875 358999999999999999887543335799999999998755211
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
.+..||+|++|. |..=...++++.+.+ |++++++.+
T Consensus 359 -------------~~~~~D~vi~dP------------Pr~G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 359 -------------AGQIPDVLLLDP------------PRKGCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred -------------cCCCCCEEEECc------------CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence 235699999973 322234778887664 888886554
No 128
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.22 E-value=1.2e-05 Score=79.22 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=84.6
Q ss_pred CCCCeEEEEeCchhHHHHHHHhhC-C------CEEEEEECChHHHHHHHHhc---CCCCCCCeEEEEchHHHHHHHHHhh
Q 038592 261 GFRPKALCVGVGGGALVSFLRTQL-D------FEVVGVEMDEVVLRVARQYF---GLEDGEFLQVSVGDAIEFLEKLARQ 330 (478)
Q Consensus 261 g~~~~VLvIGlGgG~L~~~L~~~~-~------~~V~~VEiDp~Vl~vA~~~F---g~~~d~rl~v~v~Dg~~~l~~~~~~ 330 (478)
+...++|.+++|+|-++--+.++. . .+|+++||+|.++.++++.- ++..++++.++.+||.+.
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L------- 171 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL------- 171 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-------
Confidence 345799999999999887677664 3 69999999999999999877 777888999999999876
Q ss_pred hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
+.++..||+..+- +.-. .|+. -...++.+++.|+|||.|.+=-.+
T Consensus 172 -----------------------pFdd~s~D~yTia-fGIR-----N~th----~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 172 -----------------------PFDDDSFDAYTIA-FGIR-----NVTH----IQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred -----------------------CCCCCcceeEEEe-ccee-----cCCC----HHHHHHHHHHhcCCCcEEEEEEcc
Confidence 1257789998882 2211 2332 367999999999999999854333
No 129
>PRK05785 hypothetical protein; Provisional
Probab=98.22 E-value=1.8e-05 Score=77.24 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=72.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.||+|+|.++..|.+..+.+|++||++++|++.|++.- ..+++|+.+.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~l------------------- 104 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------DKVVGSFEAL------------------- 104 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------ceEEechhhC-------------------
Confidence 5699999999999998888776679999999999999998631 2456776543
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYD 415 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~ 415 (478)
+..+++||+|++-. ++..-+ --+..++.+++.|+|. +.++-+..++..+.+
T Consensus 105 -----------p~~d~sfD~v~~~~-------~l~~~~---d~~~~l~e~~RvLkp~-~~ile~~~p~~~~~~ 155 (226)
T PRK05785 105 -----------PFRDKSFDVVMSSF-------ALHASD---NIEKVIAEFTRVSRKQ-VGFIAMGKPDNVIKR 155 (226)
T ss_pred -----------CCCCCCEEEEEecC-------hhhccC---CHHHHHHHHHHHhcCc-eEEEEeCCCCcHHHH
Confidence 12567899999921 111011 2367999999999994 334434444433333
No 130
>PHA03411 putative methyltransferase; Provisional
Probab=98.21 E-value=1.8e-05 Score=79.51 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=78.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.+|+|.|.++..+.... ..+|++||+++.+++.|++.+ ++++++.+|+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~----------------- 122 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFE----------------- 122 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhc-----------------
Confidence 4689999999999988776654 579999999999999999864 36899999999874
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCC-C---CCCCCC-----CCCCC-hHHHHHHHHHccCcCcEEEEEeCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-R---NGTSAP-----PVEFV-RKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-~---~g~s~P-----p~~f~-~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
...+||+|+.+.-=... . ..+..- .-..+ -..|+..+...|+|+|.+.+-..+
T Consensus 123 --------------~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss 185 (279)
T PHA03411 123 --------------SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSG 185 (279)
T ss_pred --------------ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEec
Confidence 23579999995411100 0 000000 00111 267889999999999987766554
No 131
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=5e-06 Score=79.57 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=89.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeE-EEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQ-VSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~-v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
...||.+|+|+|.-=.|.-..+..+||.+|-+|.|-++|.+-+.-...+.+. ++++||.+..+=
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l--------------- 141 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL--------------- 141 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc---------------
Confidence 5678999999999666655445689999999999999999887654445565 899999876321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
++.+||+|+.-+- -|.-+ -..+.|++++++|+|||.+++-=... ..+......+
T Consensus 142 --------------~d~s~DtVV~Tlv--------LCSve--~~~k~L~e~~rlLRpgG~iifiEHva--~~y~~~n~i~ 195 (252)
T KOG4300|consen 142 --------------ADGSYDTVVCTLV--------LCSVE--DPVKQLNEVRRLLRPGGRIIFIEHVA--GEYGFWNRIL 195 (252)
T ss_pred --------------ccCCeeeEEEEEE--------EeccC--CHHHHHHHHHHhcCCCcEEEEEeccc--ccchHHHHHH
Confidence 5778999997431 11111 23789999999999999998633222 2234445556
Q ss_pred HHhcCcc
Q 038592 422 RDVFQEL 428 (478)
Q Consensus 422 ~~vF~~v 428 (478)
++++..+
T Consensus 196 q~v~ep~ 202 (252)
T KOG4300|consen 196 QQVAEPL 202 (252)
T ss_pred HHHhchh
Confidence 6666643
No 132
>PRK06922 hypothetical protein; Provisional
Probab=98.20 E-value=8.4e-06 Score=90.07 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=78.9
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.||||+|.++..+.+. ++.+|+++|+++.+++.|++.... ...+++++++|+.++-..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-~g~~ie~I~gDa~dLp~~--------------- 482 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-EGRSWNVIKGDAINLSSS--------------- 482 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-cCCCeEEEEcchHhCccc---------------
Confidence 579999999999988777765 478999999999999999876532 234688899999874211
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeC-----CCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDL-----DSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv-----~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
..+..||+|+... ++--+..+...++. .-..+|+.+++.|+|||.+++.-
T Consensus 483 -------------fedeSFDvVVsn~vLH~L~syIp~~g~~f~~e--dl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 483 -------------FEKESVDTIVYSSILHELFSYIEYEGKKFNHE--VIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred -------------cCCCCEEEEEEchHHHhhhhhcccccccccHH--HHHHHHHHHHHHcCCCcEEEEEe
Confidence 1356799998731 10000000000000 23789999999999999999853
No 133
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.19 E-value=1.6e-05 Score=81.45 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=72.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.+||.+|+|.|.++..+.+. +.+|++||+++.+++.|++......-++++++.+|+.++...
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---------------- 236 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---------------- 236 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh----------------
Confidence 468999999999999988874 579999999999999999876432225799999999998643
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
...+||+|++|. |..=+..+.++.+.+ +++++++.+
T Consensus 237 -------------~~~~~D~Vv~dP------------Pr~G~~~~~~~~l~~-~~~~~ivyv 272 (315)
T PRK03522 237 -------------QGEVPDLVLVNP------------PRRGIGKELCDYLSQ-MAPRFILYS 272 (315)
T ss_pred -------------cCCCCeEEEECC------------CCCCccHHHHHHHHH-cCCCeEEEE
Confidence 234699999972 322133455555444 677765553
No 134
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.19 E-value=1.4e-05 Score=76.95 Aligned_cols=99 Identities=21% Similarity=0.290 Sum_probs=72.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+||.||+|.|.++..+... +.+|++||+++++++.|++.+.... ..++.+.++|..+.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------------------ 116 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL------------------ 116 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC------------------
Confidence 579999999999999988765 5699999999999999998875332 24789999997643
Q ss_pred ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
. .+||+|+. ++.. ..|+.. -..+++.+++.+++++++.+
T Consensus 117 --------------~-~~fD~ii~~~~l~-------~~~~~~--~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 --------------C-GEFDIVVCMDVLI-------HYPASD--MAKALGHLASLTKERVIFTF 156 (219)
T ss_pred --------------C-CCcCEEEEhhHHH-------hCCHHH--HHHHHHHHHHHhCCCEEEEE
Confidence 2 57999987 2211 012211 25678888888887665554
No 135
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=1.4e-05 Score=81.05 Aligned_cols=133 Identities=22% Similarity=0.264 Sum_probs=86.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCC-CeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE-FLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~-rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.+|+|+|.|+....+.-..+|.++|+||.-+++|++..-+..-+ ..++-..+..+.
T Consensus 163 g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~------------------ 224 (300)
T COG2264 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV------------------ 224 (300)
T ss_pred CCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh------------------
Confidence 6899999999999998777653468999999999999999987543211 111222222221
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
....+||+|+..+-.. .-..+...++++|+|||.+++-=+-. +..+++.+.+
T Consensus 225 -------------~~~~~~DvIVANILA~-------------vl~~La~~~~~~lkpgg~lIlSGIl~--~q~~~V~~a~ 276 (300)
T COG2264 225 -------------PENGPFDVIVANILAE-------------VLVELAPDIKRLLKPGGRLILSGILE--DQAESVAEAY 276 (300)
T ss_pred -------------cccCcccEEEehhhHH-------------HHHHHHHHHHHHcCCCceEEEEeehH--hHHHHHHHHH
Confidence 1346899999976321 12578889999999999999643322 2245666666
Q ss_pred -HHhcCccEEEeecccceEEEEEE
Q 038592 422 -RDVFQELYEIDVGNEENFVLIAT 444 (478)
Q Consensus 422 -~~vF~~v~~~~v~~~~N~Vl~a~ 444 (478)
++-|..+-...- ..|+.+..
T Consensus 277 ~~~gf~v~~~~~~---~eW~~i~~ 297 (300)
T COG2264 277 EQAGFEVVEVLER---EEWVAIVG 297 (300)
T ss_pred HhCCCeEeEEEec---CCEEEEEE
Confidence 335654433332 34555544
No 136
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.17 E-value=5.6e-06 Score=79.07 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=73.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.++|.||+|.|--+.||++. +..|++||+++.-++.+++.-.- ++=.++..+.|.-++-
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~~------------------ 90 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDFD------------------ 90 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCBS------------------
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhcc------------------
Confidence 679999999999999999986 88999999999999877665321 1223888888855441
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||+|+..+- -+..+|+ .-+..++++++.++|||++++..
T Consensus 91 -------------~~~~yD~I~st~v------~~fL~~~--~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 -------------FPEEYDFIVSTVV------FMFLQRE--LRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp --------------TTTEEEEEEESS------GGGS-GG--GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred -------------ccCCcCEEEEEEE------eccCCHH--HHHHHHHHHHhhcCCcEEEEEEE
Confidence 2457999987431 1222333 33779999999999999988754
No 137
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.16 E-value=5.2e-05 Score=81.73 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=97.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.++.|-|+-+..|...+ ...|+++|+++.-++..++.+.--.-.++.+...|+..+-+.
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-------------- 179 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-------------- 179 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh--------------
Confidence 4699999999999888888876 369999999999998887654321224588999999876432
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCCC-------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVEF-------------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~f-------------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||.|++|+.++-. ||. --|... ++.+.|..+.+.|+|||++|.-+
T Consensus 180 ---------------~~~~fD~ILvDaPCSG~--G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 180 ---------------LPETFDAILLDAPCSGE--GTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred ---------------chhhcCeEEEcCCCCCC--cccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 23569999999976532 332 112211 35889999999999999998877
Q ss_pred CCCCchHHHHHHHHHHHhcCc
Q 038592 407 IPPNRSFYDMLIQEFRDVFQE 427 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~ 427 (478)
.+-+++--+.+++.+.+-|+.
T Consensus 243 CT~~~eENE~vV~~~L~~~~~ 263 (470)
T PRK11933 243 CTLNREENQAVCLWLKETYPD 263 (470)
T ss_pred CCCCHHHHHHHHHHHHHHCCC
Confidence 776666556666666555654
No 138
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.15 E-value=9.1e-06 Score=77.79 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=92.3
Q ss_pred CeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+-+|.||+|.|.....++.. ++..+.+||+....+..|.+......-+++.++.+||..++....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~-------------- 84 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF-------------- 84 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS--------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc--------------
Confidence 37899999999877666665 689999999999999988766543345789999999999998752
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR 422 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~ 422 (478)
.+...|-|.+--.++.+..-. --..+++++|+..+.+.|++||.+. +.+.+.+....+++.+.
T Consensus 85 -------------~~~~v~~i~i~FPDPWpK~rH--~krRl~~~~fl~~~~~~L~~gG~l~--~~TD~~~y~~~~~~~~~ 147 (195)
T PF02390_consen 85 -------------PPGSVDRIYINFPDPWPKKRH--HKRRLVNPEFLELLARVLKPGGELY--FATDVEEYAEWMLEQFE 147 (195)
T ss_dssp -------------TTTSEEEEEEES-----SGGG--GGGSTTSHHHHHHHHHHEEEEEEEE--EEES-HHHHHHHHHHHH
T ss_pred -------------cCCchheEEEeCCCCCcccch--hhhhcCCchHHHHHHHHcCCCCEEE--EEeCCHHHHHHHHHHHH
Confidence 356799999954333221000 0134899999999999999999886 44455677777777777
Q ss_pred Hh
Q 038592 423 DV 424 (478)
Q Consensus 423 ~v 424 (478)
+.
T Consensus 148 ~~ 149 (195)
T PF02390_consen 148 ES 149 (195)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 139
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.14 E-value=4.7e-05 Score=73.32 Aligned_cols=122 Identities=19% Similarity=0.204 Sum_probs=81.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.||+|.|.++..|.+.. +.++++||+++.+++.|++.+ ++++++.+|+.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~------------------ 100 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDP------------------ 100 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCC------------------
Confidence 5689999999999999998874 689999999999999999875 3467888886652
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC-----------
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN----------- 410 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~----------- 410 (478)
..+.+||+|+... ....+ +|. .-..+++.+.+.++ +-+++.....++
T Consensus 101 -------------~~~~sfD~V~~~~----vL~hl--~p~--~~~~~l~el~r~~~-~~v~i~e~~~~~~~~~~y~~~~~ 158 (204)
T TIGR03587 101 -------------FKDNFFDLVLTKG----VLIHI--NPD--NLPTAYRELYRCSN-RYILIAEYYNPSPVEISYRGNSG 158 (204)
T ss_pred -------------CCCCCEEEEEECC----hhhhC--CHH--HHHHHHHHHHhhcC-cEEEEEEeeCCCceeeeeeCCcc
Confidence 1456899999721 10011 122 22567788888774 244454543321
Q ss_pred chHHHHHHHHHHHhcCccE
Q 038592 411 RSFYDMLIQEFRDVFQELY 429 (478)
Q Consensus 411 ~~~~~~v~~~l~~vF~~v~ 429 (478)
.-+.+.....+.+.|+.+-
T Consensus 159 ~~~~~d~~~~~~~~~~~l~ 177 (204)
T TIGR03587 159 RLWKRDFAGEMMDRYPDLK 177 (204)
T ss_pred hhhhhhHHHHHHHhCCcce
Confidence 1122334566667788643
No 140
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.13 E-value=2.2e-05 Score=79.88 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=74.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
+.+||.+|+|+|..+..|.+.+ +.++++||++++|++.|++.+.-. ..-++..+++|..+.+.-...
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~---------- 133 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPE---------- 133 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcc----------
Confidence 4689999999999998888876 589999999999999998875321 122456689998765422100
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
.......+++.+ +. . +.. +|. -...||+.+++.|+|||.|++.+-
T Consensus 134 ---------------~~~~~~~~~~~g--s~--~-~~~-~~~--e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 134 ---------------PAAGRRLGFFPG--ST--I-GNF-TPE--EAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ---------------cccCCeEEEEec--cc--c-cCC-CHH--HHHHHHHHHHHhcCCCCEEEEecc
Confidence 011123334332 11 1 111 122 135799999999999999997554
No 141
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.12 E-value=1.2e-05 Score=81.74 Aligned_cols=102 Identities=9% Similarity=0.006 Sum_probs=74.1
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.||+|.|.++..+.+. ++.+++++|+ |.+++.|++...-. ..+|++++.+|..+.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~----------------- 211 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE----------------- 211 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC-----------------
Confidence 579999999999999888776 4789999998 78999998875422 246899999998642
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
.-..+|+|++-- .+..-+.. ....+|+.+++.|+|||.+++.
T Consensus 212 ---------------~~~~~D~v~~~~-------~lh~~~~~-~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 212 ---------------SYPEADAVLFCR-------ILYSANEQ-LSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred ---------------CCCCCCEEEeEh-------hhhcCChH-HHHHHHHHHHHhcCCCCEEEEE
Confidence 112369988721 01000111 1256899999999999999764
No 142
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.12 E-value=1.2e-05 Score=86.40 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=76.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.++..|.+. ..+|++||+++.+++.|++..+. .++++++++|+...-..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~--~~~i~~~~~d~~~~~~~---------------- 98 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGH--YKNVKFMCADVTSPDLN---------------- 98 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhcc--CCceEEEEecccccccC----------------
Confidence 458999999999999998876 46999999999999998875442 35789999998542100
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
.+..+||+|++...- .-+ ++. .-.++++.+++.|+|||.+++.
T Consensus 99 ------------~~~~~fD~I~~~~~l----~~l--~~~--~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 99 ------------ISDGSVDLIFSNWLL----MYL--SDK--EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ------------CCCCCEEEEehhhhH----HhC--CHH--HHHHHHHHHHHhcCCCeEEEEE
Confidence 145689999984210 000 110 1268999999999999999873
No 143
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.12 E-value=1.2e-05 Score=72.26 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=69.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.++..+++. +.+++++|+++.+++. .++.....+.....
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~------------------ 73 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPP------------------ 73 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH----------TTSEEEEEECHTHH------------------
T ss_pred CCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhh------------------
Confidence 679999999999999888665 5699999999999998 11222222222211
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
..+.+||+|++- ..-. .+ + --..+|+.++++|+|||++++....+.
T Consensus 74 ------------~~~~~fD~i~~~--~~l~--~~---~---d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 74 ------------FPDGSFDLIICN--DVLE--HL---P---DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp ------------CHSSSEEEEEEE--SSGG--GS---S---HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred ------------ccccchhhHhhH--HHHh--hc---c---cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 146789999983 1111 11 1 237899999999999999999887764
No 144
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.11 E-value=2.6e-05 Score=75.11 Aligned_cols=126 Identities=25% Similarity=0.297 Sum_probs=95.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||-||.|.|....++++....+-..+|..|.|++..|++ |-.+.+++.+..+=-.+.+..+
T Consensus 102 ggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~-gw~ek~nViil~g~WeDvl~~L--------------- 165 (271)
T KOG1709|consen 102 GGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDW-GWREKENVIILEGRWEDVLNTL--------------- 165 (271)
T ss_pred CceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhc-ccccccceEEEecchHhhhccc---------------
Confidence 579999999999999999999888889999999999999987 4344566777666555555443
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE-EEeCCCCchHHHHHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV-MNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv-~N~~~~~~~~~~~v~~~l 421 (478)
.++.||-|+.|.++.-.. -..+|.+.+-++|+|+|+|. +|..+-+..++
T Consensus 166 -------------~d~~FDGI~yDTy~e~yE----------dl~~~hqh~~rLLkP~gv~SyfNg~~~~~~~~------- 215 (271)
T KOG1709|consen 166 -------------PDKHFDGIYYDTYSELYE----------DLRHFHQHVVRLLKPEGVFSYFNGLGADNLMF------- 215 (271)
T ss_pred -------------cccCcceeEeechhhHHH----------HHHHHHHHHhhhcCCCceEEEecCcccchhhh-------
Confidence 466799999998864321 34789999999999999997 48887765432
Q ss_pred HHhcCccEEEeec
Q 038592 422 RDVFQELYEIDVG 434 (478)
Q Consensus 422 ~~vF~~v~~~~v~ 434 (478)
-.++..+..+.+.
T Consensus 216 ~~vy~~lV~iev~ 228 (271)
T KOG1709|consen 216 YDVYKILVMIEVA 228 (271)
T ss_pred hhhhheeEEEEee
Confidence 2345555555543
No 145
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.11 E-value=1.9e-05 Score=81.15 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=73.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHH---HhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVAR---QYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~---~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
.++||.||||.|.++..+.......|++||+++.++..++ ++.+ .+.+++++.+|..++-
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~--~~~~i~~~~~d~e~lp--------------- 185 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG--NDQRAHLLPLGIEQLP--------------- 185 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--CCCCeEEEeCCHHHCC---------------
Confidence 4799999999999998887765457999999999886432 3333 2457999998876540
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||+|++= . ....+. --..+|+.+++.|+|||.+++..
T Consensus 186 ----------------~~~~FD~V~s~--~--vl~H~~------dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 ----------------ALKAFDTVFSM--G--VLYHRR------SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ----------------CcCCcCEEEEC--C--hhhccC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 24679999971 0 000011 12679999999999999999864
No 146
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.11 E-value=2.5e-05 Score=80.11 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=71.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHH---HHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRV---ARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~v---A~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+||.||||+|.+...+.......|++||+++.++.. ++++++ .+.++.+...|..+.-
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~--~~~~v~~~~~~ie~lp--------------- 184 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLD--NDKRAILEPLGIEQLH--------------- 184 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhc--cCCCeEEEECCHHHCC---------------
Confidence 47999999999998877776544589999999999864 344443 3457788777754431
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||+|++-- ..-.+. .-..+|+.+++.|+|||.|++..
T Consensus 185 ----------------~~~~FD~V~s~g----vL~H~~------dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 185 ----------------ELYAFDTVFSMG----VLYHRK------SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ----------------CCCCcCEEEEcc----hhhccC------CHHHHHHHHHHhcCCCCEEEEEE
Confidence 234799999721 000010 12579999999999999999864
No 147
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.10 E-value=2.2e-05 Score=84.03 Aligned_cols=103 Identities=22% Similarity=0.159 Sum_probs=75.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.+|+|.|.++..|.+.. .+|++||+++.+++.|++.+....-++++++.+|+.+++.+...
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~------------- 363 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW------------- 363 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh-------------
Confidence 3689999999999998888764 69999999999999999876433224699999999988643110
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
.+.+||+|++|. |-.=. .+.++.+.+ |++++++.+-.
T Consensus 364 -------------~~~~fD~Vi~dP------------Pr~g~-~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 364 -------------ALGGFDKVLLDP------------PRAGA-AEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred -------------hcCCCCEEEECc------------CCcCh-HHHHHHHHh-cCCCeEEEEEe
Confidence 235699999973 32212 356666655 68888766543
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.09 E-value=3e-05 Score=81.32 Aligned_cols=100 Identities=15% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.+|+|.|.++..+... ..+|++||+|+..++.|++......-++++++.+|+.+++..
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~---------------- 296 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA---------------- 296 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh----------------
Confidence 368999999999999888753 479999999999999999876433224799999999998743
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
...+||+|++| ||-.=...++++.+. .++|++++.+-
T Consensus 297 -------------~~~~~D~vi~D------------PPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 297 -------------QMSAPELVLVN------------PPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred -------------cCCCCCEEEEC------------CCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 12359999997 232224477777775 47888876643
No 149
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.08 E-value=1e-05 Score=86.65 Aligned_cols=125 Identities=22% Similarity=0.155 Sum_probs=80.4
Q ss_pred hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhC-----CCEEEEEECChHHHHHHHHhcC-CCCC
Q 038592 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQL-----DFEVVGVEMDEVVLRVARQYFG-LEDG 310 (478)
Q Consensus 237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA~~~Fg-~~~d 310 (478)
..|.++|..++.=...... .....+.||+||+|.|-|.++..+.. ..+|.+||.+|..+...++... -.-+
T Consensus 164 ~~Ye~AI~~al~D~~~~~~---~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~ 240 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNS---YSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG 240 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS----SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhhhhcc---ccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC
Confidence 4577787665432221100 00024679999999999998887764 3799999999976665433211 1125
Q ss_pred CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592 311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL 390 (478)
Q Consensus 311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~ 390 (478)
++++|+.+|..++- ...+.|+|+.-+-.+-. -.+ +.+|.|.
T Consensus 241 ~~V~vi~~d~r~v~-------------------------------lpekvDIIVSElLGsfg-------~nE-l~pE~Ld 281 (448)
T PF05185_consen 241 DKVTVIHGDMREVE-------------------------------LPEKVDIIVSELLGSFG-------DNE-LSPECLD 281 (448)
T ss_dssp TTEEEEES-TTTSC-------------------------------HSS-EEEEEE---BTTB-------TTT-SHHHHHH
T ss_pred CeEEEEeCcccCCC-------------------------------CCCceeEEEEeccCCcc-------ccc-cCHHHHH
Confidence 78999999999881 34589999997654321 123 5578899
Q ss_pred HHHHccCcCcEEE
Q 038592 391 AARLILSDFGIFV 403 (478)
Q Consensus 391 ~~~~~L~~~Gilv 403 (478)
.+.+.|+|+|+++
T Consensus 282 a~~rfLkp~Gi~I 294 (448)
T PF05185_consen 282 AADRFLKPDGIMI 294 (448)
T ss_dssp HGGGGEEEEEEEE
T ss_pred HHHhhcCCCCEEe
Confidence 9999999999887
No 150
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.08 E-value=2e-05 Score=81.10 Aligned_cols=113 Identities=19% Similarity=0.148 Sum_probs=79.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||..|+|+|+++..+.. .+.+|+++|+|+.+++.|++.+....-+.++++.+|+.+.-
T Consensus 183 g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~------------------ 243 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP------------------ 243 (329)
T ss_pred cCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC------------------
Confidence 45899999999998766543 47899999999999999987653211123889999987641
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--ChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--VRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
.....||+|++|..-+... +. ....+ +-.++++.+++.|+|||.+++-+...
T Consensus 244 ------------~~~~~~D~Iv~dPPyg~~~-~~--~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 244 ------------LSSESVDAIATDPPYGRST-TA--AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ------------cccCCCCEEEECCCCcCcc-cc--cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 1346799999974222110 00 01111 23789999999999999998866544
No 151
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.02 E-value=5.8e-05 Score=74.01 Aligned_cols=120 Identities=18% Similarity=0.265 Sum_probs=90.5
Q ss_pred CeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+-+|.||+|.|.....+++. ++..+.+||+-..++..|-+...-..-++++++..||.+++..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~-------------- 115 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI-------------- 115 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC--------------
Confidence 67999999999877666665 679999999999999988877654333489999999999998742
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCC--CCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPP--VEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp--~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 416 (478)
+++..|=|.+--.++.+-. .. -.+++++|++.+.+.|++||.|-+-+ .+......
T Consensus 116 -------------~~~sl~~I~i~FPDPWpKk----RH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT--D~~~y~e~ 172 (227)
T COG0220 116 -------------PDGSLDKIYINFPDPWPKK----RHHKRRLTQPEFLKLYARKLKPGGVLHFAT--DNEEYFEW 172 (227)
T ss_pred -------------CCCCeeEEEEECCCCCCCc----cccccccCCHHHHHHHHHHccCCCEEEEEe--cCHHHHHH
Confidence 3458999999544433221 11 23899999999999999999988543 34444443
No 152
>PRK06202 hypothetical protein; Provisional
Probab=98.00 E-value=6.6e-05 Score=73.08 Aligned_cols=107 Identities=20% Similarity=0.192 Sum_probs=74.0
Q ss_pred CCCeEEEEeCchhHHHHHHHhh-----CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 262 FRPKALCVGVGGGALVSFLRTQ-----LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~-----~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
.+.+||.||+|+|.++..|.+. ++.+|++||+++.+++.|++... .+++++++.|+-.+-
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~l~------------ 124 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR---RPGVTFRQAVSDELV------------ 124 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc---cCCCeEEEEeccccc------------
Confidence 3679999999999988887753 24699999999999999998754 234666666654331
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR 411 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~ 411 (478)
..+.+||+|++-. .. ..+++.. -..+++.+++.++ |.++++-..+..
T Consensus 125 ------------------~~~~~fD~V~~~~----~l--hh~~d~~--~~~~l~~~~r~~~--~~~~i~dl~~~~ 171 (232)
T PRK06202 125 ------------------AEGERFDVVTSNH----FL--HHLDDAE--VVRLLADSAALAR--RLVLHNDLIRSR 171 (232)
T ss_pred ------------------ccCCCccEEEECC----ee--ecCChHH--HHHHHHHHHHhcC--eeEEEeccccCH
Confidence 1346799999931 10 0112211 2469999999998 667777766654
No 153
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.98 E-value=4.7e-05 Score=80.17 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=78.4
Q ss_pred CeEEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.+||.+++|.|..+..+....+ .+|+++|+||..++.+++...+..-+.++++.+|+.+++.+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~---------------- 122 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE---------------- 122 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh----------------
Confidence 5899999999999988776554 59999999999999999887544334577999999988742
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
..+||+|++|.+ | ...+|+..+...++++|++.+-
T Consensus 123 --------------~~~fD~V~lDP~------G--------s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 123 --------------ERKFDVVDIDPF------G--------SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --------------cCCCCEEEECCC------C--------CcHHHHHHHHHHhcCCCEEEEE
Confidence 245999999854 1 1257899988889999999875
No 154
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.97 E-value=5.7e-05 Score=76.83 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=51.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~ 323 (478)
..+||.||+|.|.++..|.+. ..+|++||+|+.+++.+++.+... ..++++++.+|+.++
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 468999999999999988875 468999999999999999887532 246899999999875
No 155
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.94 E-value=8.7e-05 Score=77.55 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=53.2
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHH
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKL 327 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~ 327 (478)
.++|.+++|.|+++..|.+.. .+|++||+++..++.|++......-.+++++.+|+.+++++.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~ 270 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAM 270 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence 479999999999998888764 499999999999999998764433347999999999998763
No 156
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.94 E-value=6.4e-05 Score=77.18 Aligned_cols=58 Identities=14% Similarity=0.084 Sum_probs=47.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-----CCCCeEEEEchHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-----DGEFLQVSVGDAI 321 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-----~d~rl~v~v~Dg~ 321 (478)
..+||.||+|.|.++..|.+. +.+|+++|+++.+++.|++.+... ...++++...|..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 469999999999999888875 679999999999999999876421 1245788888853
No 157
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.91 E-value=9.6e-05 Score=77.00 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=53.1
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK 326 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~ 326 (478)
.+||.+|+|.|.++..|.+.. .+|++||+++.+++.|++.+....-++++++.+|+.+++..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQA 260 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHH
Confidence 479999999999999888765 49999999999999999887544334799999999999864
No 158
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.90 E-value=7.9e-05 Score=71.79 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=47.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEch
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGD 319 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~D 319 (478)
..+||.||+|.|.++..|.+. +.+|+++|+++.+++.|++.+.-. ..++++++.+|
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 469999999999999888765 467999999999999999987532 22578999999
No 159
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.88 E-value=4.5e-05 Score=72.59 Aligned_cols=68 Identities=26% Similarity=0.393 Sum_probs=60.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..|||.+|||.|.|..+|.+..+++..+||||++-+..|.+. .+.|+.+|.-+-|..
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~---------------- 70 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLAD---------------- 70 (193)
T ss_pred CCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhh----------------
Confidence 469999999999999999998899999999999998888765 378999999998865
Q ss_pred cccCCCccCCCCCCCCceeEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMV 365 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIiv 365 (478)
.+++.||.||+
T Consensus 71 ------------f~d~sFD~VIl 81 (193)
T PF07021_consen 71 ------------FPDQSFDYVIL 81 (193)
T ss_pred ------------CCCCCccEEeh
Confidence 26889999999
No 160
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.88 E-value=3.9e-05 Score=74.32 Aligned_cols=105 Identities=24% Similarity=0.239 Sum_probs=71.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCe-EEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL-QVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl-~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..++|..|+|-|-.+.-|.-..--+|+.||..+..++.|++|++-. .+++ ++++.---+|..
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P---------------- 118 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTP---------------- 118 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-------------------
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccC----------------
Confidence 5789999999999887554333359999999999999999998852 3444 444444444521
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEEE--EeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFVM--NVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv~--N~~~~ 409 (478)
...+||+|.+=-.. .+|.+ .+||+.|+..|+|+|++++ |+...
T Consensus 119 --------------~~~~YDlIW~QW~l-----------ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~ 166 (218)
T PF05891_consen 119 --------------EEGKYDLIWIQWCL-----------GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSS 166 (218)
T ss_dssp ---------------TT-EEEEEEES-G-----------GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred --------------CCCcEeEEEehHhh-----------ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCC
Confidence 34689999993211 23333 5789999999999999999 88665
No 161
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.87 E-value=0.00011 Score=77.25 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=81.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+.+||.+..|.|..+....... + .+|+++|++|..++.+++...+..-++++++.+|+..++.+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-------------- 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY-------------- 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH--------------
Confidence 3589999999999997777653 4 59999999999999999887654334689999999999865
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
...+||+|++|.+.. | .+|+..+.+.++++|++.+-
T Consensus 111 ---------------~~~~fDvIdlDPfGs--------~------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 111 ---------------RNRKFHVIDIDPFGT--------P------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---------------hCCCCCEEEeCCCCC--------c------HHHHHHHHHhcccCCEEEEE
Confidence 245799999986421 1 46999999999999999876
No 162
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.86 E-value=2.2e-05 Score=76.83 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=68.8
Q ss_pred CCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 262 FRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..++|+.||+|.|.++..+.+. ++.++++.|+ |.|++.|++ .+|++++-+|..+ .
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~---~-------------- 155 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD---P-------------- 155 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT---C--------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHh---h--------------
Confidence 3568999999999988776665 5899999999 999999998 6899999999872 1
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC--cEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF--GIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~--Gilv~ 404 (478)
-.. +|++++--.=.+ . ++. .....|++++..|+|| |.+++
T Consensus 156 ---------------~P~-~D~~~l~~vLh~----~--~d~--~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 156 ---------------LPV-ADVYLLRHVLHD----W--SDE--DCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp ---------------CSS-ESEEEEESSGGG----S---HH--HHHHHHHHHHHHSEECTTEEEEE
T ss_pred ---------------hcc-ccceeeehhhhh----c--chH--HHHHHHHHHHHHhCCCCCCeEEE
Confidence 223 999998210000 0 111 2467899999999988 87776
No 163
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.84 E-value=7.1e-05 Score=73.30 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=89.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ 330 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~ 330 (478)
..+|||.|||-|.-+.+|+.+ +.+|++||+++.-++.+.+-.++. ...++++.++|.+++=..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~---- 118 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI---- 118 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc----
Confidence 469999999999999999886 789999999999999986633321 245789999999886100
Q ss_pred hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-
Q 038592 331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP- 409 (478)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~- 409 (478)
.....+||+|+-=. -+.+-|++ ....+.+.+.++|+|||.+++-....
T Consensus 119 -----------------------~~~~~~fD~VyDra-------~~~Alpp~-~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 119 -----------------------ANNLPVFDIWYDRG-------AYIALPND-LRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred -----------------------ccccCCcCeeeeeh-------hHhcCCHH-HHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 01235799966411 11122444 56889999999999999877543321
Q ss_pred ----CchHHHHHHHHHHHhcCccEEEe
Q 038592 410 ----NRSFYDMLIQEFRDVFQELYEID 432 (478)
Q Consensus 410 ----~~~~~~~v~~~l~~vF~~v~~~~ 432 (478)
.+.+. --...+++.|...+.+.
T Consensus 168 ~~~~GPPf~-v~~~e~~~lf~~~~~i~ 193 (226)
T PRK13256 168 KKSQTPPYS-VTQAELIKNFSAKIKFE 193 (226)
T ss_pred CCCCCCCCc-CCHHHHHHhccCCceEE
Confidence 12221 11356777887655443
No 164
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.83 E-value=0.00013 Score=72.61 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=51.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
..+||.||+|.|.++..+.+. ..+|++||+|+.+++.+++.+.. .++++++.+|+.++
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~ 87 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKV 87 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccC
Confidence 468999999999999999887 56999999999999999998753 46899999999865
No 165
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.83 E-value=5.3e-05 Score=74.16 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=74.8
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+-++.+|+|.|..++.+..++ -+|+++|++++|+++|++++... .+-..+..-.++++++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~------------------ 95 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL------------------ 95 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc------------------
Confidence 478899999998888888874 58999999999999999998753 1222334444555553
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-CChHHHHHHHHHccCcCc-EEEEEeCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-FVRKDVLLAARLILSDFG-IFVMNVIP 408 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-f~~~efl~~~~~~L~~~G-ilv~N~~~ 408 (478)
..+++.|+|++= . ..+ |--++|++.+++.|+++| ++++....
T Consensus 96 ------------g~e~SVDlI~~A----q--------a~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 96 ------------GGEESVDLITAA----Q--------AVHWFDLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ------------CCCcceeeehhh----h--------hHHhhchHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 136789999881 1 123 567999999999998755 88876654
No 166
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.79 E-value=9.8e-05 Score=71.95 Aligned_cols=131 Identities=25% Similarity=0.323 Sum_probs=86.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC------------CCCCeEEEEchHHHHHHHHHhh
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE------------DGEFLQVSVGDAIEFLEKLARQ 330 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~------------~d~rl~v~v~Dg~~~l~~~~~~ 330 (478)
+.+|||.|||-|.-..+|.++ +.+|++||+++.-++.|.+.-+.. ...++++.++|.+++=.
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~----- 111 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP----- 111 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG-----
T ss_pred CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh-----
Confidence 469999999999999999986 789999999999999985543321 24679999999998621
Q ss_pred hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCC
Q 038592 331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPP 409 (478)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~ 409 (478)
....+||+|+==. .+.+.|+. ....+.+.++++|+|+|.+++ -+.-.
T Consensus 112 ------------------------~~~g~fD~iyDr~-------~l~Alpp~-~R~~Ya~~l~~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 112 ------------------------EDVGKFDLIYDRT-------FLCALPPE-MRERYAQQLASLLKPGGRGLLITLEYP 159 (218)
T ss_dssp ------------------------SCHHSEEEEEECS-------STTTS-GG-GHHHHHHHHHHCEEEEEEEEEEEEES-
T ss_pred ------------------------hhcCCceEEEEec-------ccccCCHH-HHHHHHHHHHHHhCCCCcEEEEEEEcC
Confidence 1234799987411 12233444 678999999999999998332 22211
Q ss_pred -----CchHHHHHHHHHHHhcCccEEEe
Q 038592 410 -----NRSFYDMLIQEFRDVFQELYEID 432 (478)
Q Consensus 410 -----~~~~~~~v~~~l~~vF~~v~~~~ 432 (478)
.+.+ .--...+.+.|..-+.+.
T Consensus 160 ~~~~~GPPf-~v~~~ev~~l~~~~f~i~ 186 (218)
T PF05724_consen 160 QGEMEGPPF-SVTEEEVRELFGPGFEIE 186 (218)
T ss_dssp CSCSSSSS-----HHHHHHHHTTTEEEE
T ss_pred CcCCCCcCC-CCCHHHHHHHhcCCcEEE
Confidence 2232 223456777777555443
No 167
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.77 E-value=0.00025 Score=67.42 Aligned_cols=108 Identities=22% Similarity=0.223 Sum_probs=80.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..++|.+=.|+|+|+......-..+++.||.|...+.+.++....- ...+.+++..|+..++++..
T Consensus 44 g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~------------- 110 (187)
T COG0742 44 GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG------------- 110 (187)
T ss_pred CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC-------------
Confidence 4799999999999998776654579999999999999999887532 35789999999999987732
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC--CCh-HHHHHH--HHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE--FVR-KDVLLA--ARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~--f~~-~efl~~--~~~~L~~~Gilv~N~~~~ 409 (478)
....||+|++| ||-+ +.. ..-+.. -...|+|+|++++-....
T Consensus 111 --------------~~~~FDlVflD------------PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 111 --------------TREPFDLVFLD------------PPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred --------------CCCcccEEEeC------------CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 22369999997 3332 342 222333 245799999999865544
No 168
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00022 Score=71.05 Aligned_cols=58 Identities=31% Similarity=0.422 Sum_probs=52.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
...||.||.|.|+|+..|.+. ..+|++||||+.+++.-++.+. ..++++++.+|++++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~ 88 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKF 88 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcC
Confidence 468999999999999999986 4679999999999999999987 357899999999987
No 169
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00027 Score=70.41 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=94.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHH-HHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIE-FLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~-~l~~~~~~~~~~~~~~~ 339 (478)
+..+|.+|+|.|+.+.++.+.+ +..|++||.++..+.+|.+... +....++.|++-+--. ...+
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~------------- 215 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE------------- 215 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc-------------
Confidence 4579999999999999988876 7899999999999999987653 2234677777432211 0000
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeC---CCCC-----CCCCCCCCCCCCC--------hHHHHHHHHHccCcCcEEE
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDL---DSGD-----ARNGTSAPPVEFV--------RKDVLLAARLILSDFGIFV 403 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv---~s~d-----~~~g~s~Pp~~f~--------~~efl~~~~~~L~~~Gilv 403 (478)
-+....++|+|+..- .+.| +..+..-|+.+|. -..++..+.+.|.+||.+.
T Consensus 216 -------------~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~ 282 (328)
T KOG2904|consen 216 -------------HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ 282 (328)
T ss_pred -------------cccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence 001357899998732 1111 1122333443331 2457788889999999999
Q ss_pred EEeC--CCCchHHHHHH-HHHHHhcCccEEEeecccceEEEEE
Q 038592 404 MNVI--PPNRSFYDMLI-QEFRDVFQELYEIDVGNEENFVLIA 443 (478)
Q Consensus 404 ~N~~--~~~~~~~~~v~-~~l~~vF~~v~~~~v~~~~N~Vl~a 443 (478)
+++. ..++...+.++ ..+...|..+....-....+.+++.
T Consensus 283 le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i 325 (328)
T KOG2904|consen 283 LELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVII 325 (328)
T ss_pred EEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEE
Confidence 9998 44665555433 3333334443333222233444443
No 170
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.74 E-value=2.2e-05 Score=66.84 Aligned_cols=97 Identities=25% Similarity=0.302 Sum_probs=47.8
Q ss_pred EEEeCchhHHHHHHHhhC-C---CEEEEEECChH---HHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 267 LCVGVGGGALVSFLRTQL-D---FEVVGVEMDEV---VLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 267 LvIGlGgG~L~~~L~~~~-~---~~V~~VEiDp~---Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
|.||...|..+.++.+.. . .++.+||..+. .-+..++ .++ ..+++++.+|..+++.+..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~--~~~~~~~~g~s~~~l~~~~----------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGL--SDRVEFIQGDSPDFLPSLP----------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG---BTEEEEES-THHHHHHHH-----------
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCC--CCeEEEEEcCcHHHHHHcC-----------
Confidence 568888888777777654 2 37999999994 4444443 222 4579999999999987742
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
..+||+|++|.+.... .....++.+..+|+|||+++++
T Consensus 67 -----------------~~~~dli~iDg~H~~~-----------~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 -----------------DGPIDLIFIDGDHSYE-----------AVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp -----------------H--EEEEEEES---HH-----------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred -----------------CCCEEEEEECCCCCHH-----------HHHHHHHHHHHHcCCCeEEEEe
Confidence 3579999999754321 3467889999999999999974
No 171
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00053 Score=65.12 Aligned_cols=92 Identities=24% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.+.|+.+|+|+|.|+....-.-..+|.+||+||+.+++|++.-+- ...++.+.++|..++
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~------------------- 105 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF------------------- 105 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc-------------------
Confidence 467999999999998665533247999999999999999987653 345799999999887
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHcc
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLIL 396 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L 396 (478)
..++|.+|.+- +. |.. -.+ -+..|++.+.+.-
T Consensus 106 --------------~~~~dtvimNP----PF-G~~--~rh-aDr~Fl~~Ale~s 137 (198)
T COG2263 106 --------------RGKFDTVIMNP----PF-GSQ--RRH-ADRPFLLKALEIS 137 (198)
T ss_pred --------------CCccceEEECC----CC-ccc--ccc-CCHHHHHHHHHhh
Confidence 35688888842 11 111 122 5688988887765
No 172
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.66 E-value=0.00066 Score=63.26 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=84.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
...||.+|-|+|.+++.+..+. +..++++|.+++-+..-.+.|. .++++.+|+++.=..+..
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~e----------- 112 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLGE----------- 112 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHhh-----------
Confidence 5689999999999999998874 6799999999999999888774 357999999885322222
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..++.||.||.-+ .+-.-|.+ .+-+.|+.+...|..||.++.=..++
T Consensus 113 --------------~~gq~~D~viS~l-------Pll~~P~~-~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 113 --------------HKGQFFDSVISGL-------PLLNFPMH-RRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred --------------cCCCeeeeEEecc-------ccccCcHH-HHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 2678899999843 12222333 57889999999999999998644443
No 173
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.59 E-value=0.00043 Score=68.59 Aligned_cols=58 Identities=31% Similarity=0.390 Sum_probs=51.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
..+||.||+|.|.++..|.+.. .+|+++|+|+.+++.+++.+.. .++++++.+|+.++
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKV 87 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcC
Confidence 4689999999999999998875 4699999999999999988753 57899999999875
No 174
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00021 Score=68.73 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhC---CCEEEEEECChHHHHHHHHhcCCC----------CCCCeEEEEchHHHHHHHHHh
Q 038592 263 RPKALCVGVGGGALVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGLE----------DGEFLQVSVGDAIEFLEKLAR 329 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~~----------~d~rl~v~v~Dg~~~l~~~~~ 329 (478)
..+.|.+|.|+|.|+....... +....+||.-|++++.+++..... +..++.++++||+.--
T Consensus 83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~----- 157 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY----- 157 (237)
T ss_pred CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC-----
Confidence 4699999999999987777654 245599999999999999765321 3478999999999752
Q ss_pred hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
.+..+||.|.+-+.. .+..+.+-..|+++|-+++-+.
T Consensus 158 -------------------------~e~a~YDaIhvGAaa----------------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 158 -------------------------AEQAPYDAIHVGAAA----------------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred -------------------------CccCCcceEEEccCc----------------cccHHHHHHhhccCCeEEEeec
Confidence 256789999995332 2355678888999888887665
No 175
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.55 E-value=0.00023 Score=67.45 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=64.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+||.||+|.|.+...+.+..+..+++||+++++++.|++. +++++.+|..+.+..
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~---------------- 70 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEA---------------- 70 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccc----------------
Confidence 458999999999999888776677889999999999998752 467888997654321
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCc
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSD 398 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~ 398 (478)
..+.+||+|++-. ....+ + -...+++.+.+.++.
T Consensus 71 ------------~~~~sfD~Vi~~~----~l~~~---~---d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 71 ------------FPDKSFDYVILSQ----TLQAT---R---NPEEILDEMLRVGRH 104 (194)
T ss_pred ------------cCCCCcCEEEEhh----HhHcC---c---CHHHHHHHHHHhCCe
Confidence 1356799999831 11111 1 135677777777654
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.49 E-value=0.00023 Score=71.44 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=50.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
..+||.||+|.|.++..|.+... +|++||+|+.+++.+++.+. +++++++.+|+.++
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~---~~~v~~i~~D~~~~ 99 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA---EDNLTIIEGDALKV 99 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc---cCceEEEEChhhcC
Confidence 46899999999999999988744 99999999999999998764 26899999999976
No 177
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.49 E-value=0.00017 Score=72.53 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=74.3
Q ss_pred CCCeEEEEeCch-hHHHHHHHh-hC-CCEEEEEECChHHHHHHHHhcC-C-CCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 262 FRPKALCVGVGG-GALVSFLRT-QL-DFEVVGVEMDEVVLRVARQYFG-L-EDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 262 ~~~~VLvIGlGg-G~L~~~L~~-~~-~~~V~~VEiDp~Vl~vA~~~Fg-~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
.|.+|+.||.|. -..+..|.+ +. +..|+++|+||+-++.|++-.. . .-+.+++++.+|+.+.-.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~----------- 188 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY----------- 188 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-----------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-----------
Confidence 367999999994 344444554 33 6899999999999999988654 1 126789999999976521
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 416 (478)
.-..||+|++-+-- ||..- --.+.+.++.+.+++|.++++=-..--+.+..-
T Consensus 189 -------------------dl~~~DvV~lAalV-----g~~~e----~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp 240 (276)
T PF03059_consen 189 -------------------DLKEYDVVFLAALV-----GMDAE----PKEEILEHLAKHMAPGARLVVRSAHGLRSFLYP 240 (276)
T ss_dssp -------------------G----SEEEE-TT------S--------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-
T ss_pred -------------------ccccCCEEEEhhhc-----ccccc----hHHHHHHHHHhhCCCCcEEEEecchhhHHHcCC
Confidence 12469999995432 33211 348999999999999999987422111111111
Q ss_pred HHH--HHHHhcCccEEE-eecccceEEEEEEcCCC
Q 038592 417 LIQ--EFRDVFQELYEI-DVGNEENFVLIATGLSI 448 (478)
Q Consensus 417 v~~--~l~~vF~~v~~~-~v~~~~N~Vl~a~~~~~ 448 (478)
.++ .++ -|..+..+ +.++-.|.|+|+.+...
T Consensus 241 ~vd~~~l~-gf~~~~~~hP~~~ViNSvv~~rk~~~ 274 (276)
T PF03059_consen 241 VVDPEDLR-GFEVLAVVHPTDEVINSVVFARKKQV 274 (276)
T ss_dssp ---TGGGT-TEEEEEEE---TT---EEEEE-----
T ss_pred CCChHHCC-CeEEEEEECCCCCceeEEEEEEeccc
Confidence 111 111 45543333 34556799999987653
No 178
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.48 E-value=0.00076 Score=62.23 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=58.3
Q ss_pred EEEECChHHHHHHHHhcCCCC---CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEE
Q 038592 289 VGVEMDEVVLRVARQYFGLED---GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMV 365 (478)
Q Consensus 289 ~~VEiDp~Vl~vA~~~Fg~~~---d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIiv 365 (478)
++||+++.|+++|++...... .++++++++|+.+.- ..++.||+|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp------------------------------~~~~~fD~v~~ 50 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP------------------------------FDDCEFDAVTM 50 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC------------------------------CCCCCeeEEEe
Confidence 489999999999986653221 357999999997651 14668999998
Q ss_pred eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 366 DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 366 Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
.. ++...+ -...+|+.+++.|+|||.+++--++.
T Consensus 51 ~~-------~l~~~~---d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 51 GY-------GLRNVV---DRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred cc-------hhhcCC---CHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 31 111111 24789999999999999998755544
No 179
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.44 E-value=0.00048 Score=70.92 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=47.3
Q ss_pred CCCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEE-chHHHH
Q 038592 261 GFRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSV-GDAIEF 323 (478)
Q Consensus 261 g~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v-~Dg~~~ 323 (478)
+...++|.||+|+|++...|... ++.+++++|||+..++.|++..... -..+++++. .|.-..
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i 179 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAI 179 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhh
Confidence 34689999999988766555544 5789999999999999999887643 245788865 344333
No 180
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.40 E-value=6.1e-05 Score=73.30 Aligned_cols=101 Identities=26% Similarity=0.325 Sum_probs=77.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
-+++|.+|||+|..+-.|+.. -.++++|||++.|++.|.+-=.+ =++.++|+..|++..
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~Y-----D~L~~Aea~~Fl~~~--------------- 184 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLY-----DTLYVAEAVLFLEDL--------------- 184 (287)
T ss_pred cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccch-----HHHHHHHHHHHhhhc---------------
Confidence 579999999999999888764 46899999999999999875222 156788999998642
Q ss_pred cccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
.+.+||+|.- |+.. ..+ --+.++-.+...|+|||.|++.+..
T Consensus 185 -------------~~er~DLi~AaDVl~--YlG---------~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 185 -------------TQERFDLIVAADVLP--YLG---------ALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred -------------cCCcccchhhhhHHH--hhc---------chhhHHHHHHHhcCCCceEEEEecc
Confidence 5778999975 3322 111 1156888899999999999998754
No 181
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.39 E-value=0.0012 Score=64.26 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=95.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECCh----HHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDE----VVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp----~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
..+||-+|...|+..+.+.... ...|.+||.+| +++++|++. +++--+++||..--+= .
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R------~NIiPIl~DAr~P~~Y-~-------- 138 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR------PNIIPILEDARHPEKY-R-------- 138 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS------TTEEEEES-TTSGGGG-T--------
T ss_pred CCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC------CceeeeeccCCChHHh-h--------
Confidence 4699999999999999999874 57999999999 677888876 6788899999853211 0
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP------- 409 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~------- 409 (478)
.--...|+|+.|+--++ ..+-+..+++..|++||.+++-+-.+
T Consensus 139 ------------------~lv~~VDvI~~DVaQp~------------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~ 188 (229)
T PF01269_consen 139 ------------------MLVEMVDVIFQDVAQPD------------QARIAALNARHFLKPGGHLIISIKARSIDSTAD 188 (229)
T ss_dssp ------------------TTS--EEEEEEE-SSTT------------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSS
T ss_pred ------------------cccccccEEEecCCChH------------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCC
Confidence 12347999999986543 24678889999999999888655221
Q ss_pred CchHHHHHHHHHHHh-cCccEEEeec--ccceEEEEEE
Q 038592 410 NRSFYDMLIQEFRDV-FQELYEIDVG--NEENFVLIAT 444 (478)
Q Consensus 410 ~~~~~~~v~~~l~~v-F~~v~~~~v~--~~~N~Vl~a~ 444 (478)
..+.++..++.|++. |.-+-.+.++ +..+.+++|.
T Consensus 189 p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 189 PEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEE
Confidence 235567778888874 7655555443 3446666664
No 182
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.39 E-value=0.00078 Score=63.12 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=69.9
Q ss_pred CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592 262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
..++||.||+|.|..++.+.... ..+|++-|.++ +++..+...... ..+++++..=|--+-+.....
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~-------- 115 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL-------- 115 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--------
Confidence 36899999999999998888874 67999999999 888888765432 245677766442221111000
Q ss_pred CCCcccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592 338 SFGACSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 416 (478)
...+||+|+. |+- +. .-.-+.+++.++.+|+++|.+++-...|... -+.
T Consensus 116 ------------------~~~~~D~IlasDv~--------Y~---~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~-~~~ 165 (173)
T PF10294_consen 116 ------------------EPHSFDVILASDVL--------YD---EELFEPLVRTLKRLLKPNGKVLLAYKRRRKS-EQE 165 (173)
T ss_dssp ------------------S-SSBSEEEEES----------S----GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TG-GCH
T ss_pred ------------------ccccCCEEEEeccc--------ch---HHHHHHHHHHHHHHhCCCCEEEEEeCEecHH-HHH
Confidence 3457999997 331 11 1244889999999999988866655555322 233
Q ss_pred HHHHHHH
Q 038592 417 LIQEFRD 423 (478)
Q Consensus 417 v~~~l~~ 423 (478)
+++.+++
T Consensus 166 F~~~~~k 172 (173)
T PF10294_consen 166 FFDRLKK 172 (173)
T ss_dssp HHHHH--
T ss_pred HHHHhhh
Confidence 4555543
No 183
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.38 E-value=0.0009 Score=63.24 Aligned_cols=107 Identities=22% Similarity=0.274 Sum_probs=72.3
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..|||.+|+|.|.+..-|++. ++..+++||.++..+++|+.--.-. .++.+++.+.|..+= +
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~-------------- 131 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--D-------------- 131 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--c--------------
Confidence 349999999999988888775 5677999999999999987433211 123488888887652 0
Q ss_pred cccccCCCccCCCCCCCCceeEEEE----eCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccCcCcEEEEEeC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMV----DLDSGDARNGTSAPPVEFVR--KDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIiv----Dv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~~~Gilv~N~~ 407 (478)
....+||+|+= |+-+ + | |..... .-++..+.+.|+|+|+|++--.
T Consensus 132 --------------~~~~qfdlvlDKGT~DAis------L-s-~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 132 --------------FLSGQFDLVLDKGTLDAIS------L-S-PDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred --------------ccccceeEEeecCceeeee------c-C-CCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 13456777762 2211 1 1 111111 4578889999999999997443
No 184
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.38 E-value=0.00057 Score=66.29 Aligned_cols=127 Identities=21% Similarity=0.201 Sum_probs=83.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+.=+|.||||+|..+..|..- +....+|||+|.|+++|.+ ...+.. ++.+|-=+=+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~--~e~egd---lil~DMG~Gl------------------ 106 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVE--RELEGD---LILCDMGEGL------------------ 106 (270)
T ss_pred CcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHH--hhhhcC---eeeeecCCCC------------------
Confidence 556999999999988877653 5789999999999999986 211221 2333321111
Q ss_pred cccCCCccCCCCCCCCceeEEEE-e----CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMV-D----LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDML 417 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIiv-D----v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v 417 (478)
+.....||.+|. - +++.+.+... |- ---..|+..++.+|+.++-.++++.+.+.+..+++
T Consensus 107 -----------pfrpGtFDg~ISISAvQWLcnA~~s~~~--P~--~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 107 -----------PFRPGTFDGVISISAVQWLCNADKSLHV--PK--KRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred -----------CCCCCccceEEEeeeeeeecccCccccC--hH--HHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 125677887764 1 1222221111 11 12356999999999999999999999888888886
Q ss_pred HH-HHHHhcCcc
Q 038592 418 IQ-EFRDVFQEL 428 (478)
Q Consensus 418 ~~-~l~~vF~~v 428 (478)
.+ .+++=|..-
T Consensus 172 ~~~a~~aGF~GG 183 (270)
T KOG1541|consen 172 MQQAMKAGFGGG 183 (270)
T ss_pred HHHHHhhccCCc
Confidence 54 445558753
No 185
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.37 E-value=0.00025 Score=67.17 Aligned_cols=96 Identities=20% Similarity=0.223 Sum_probs=76.0
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
-.+..+|.|+|.|+++..++ .-+|.++|.||...+.|++...++.+.++.|+++||++|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y-------------------- 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY-------------------- 92 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc--------------------
Confidence 46889999999999877765 679999999999999999999888889999999999998
Q ss_pred ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh---HHHHHHHHHccCcCcEEE
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR---KDVLLAARLILSDFGIFV 403 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~---~efl~~~~~~L~~~Gilv 403 (478)
.-..-|+|++..-+.. |.. ...+..+.+.|+.+|.++
T Consensus 93 ------------~fe~ADvvicEmlDTa-----------Li~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 93 ------------DFENADVVICEMLDTA-----------LIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ------------cccccceeHHHHhhHH-----------hhcccccHHHHHHHHHhhcCCccc
Confidence 2245789988543321 222 346677777788887765
No 186
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.34 E-value=0.0004 Score=64.94 Aligned_cols=140 Identities=21% Similarity=0.252 Sum_probs=85.0
Q ss_pred CCCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHH-----HHHHHHHhhhcCC
Q 038592 262 FRPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAI-----EFLEKLARQIVGK 334 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~-----~~l~~~~~~~~~~ 334 (478)
...+||.+|++-|+.+.++.++. ..+|.+||+-+. .+.+.+..+.+|.. +.+.+..
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~------ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLL------ 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSH------
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhc------
Confidence 46899999999999999999887 479999999988 11133444445542 2222210
Q ss_pred CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
.....++|+|+.|+-.. ..|.... .++ +....+..+...|++||.+++-+....
T Consensus 86 -------------------~~~~~~~dlv~~D~~~~--~~g~~~~-d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~ 143 (181)
T PF01728_consen 86 -------------------PESGEKFDLVLSDMAPN--VSGDRNI-DEFISIRLILSQLLLALELLKPGGTFVIKVFKGP 143 (181)
T ss_dssp -------------------GTTTCSESEEEE---------SSHHS-SHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSST
T ss_pred -------------------cccccCcceeccccccC--CCCchhh-HHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCc
Confidence 01236899999998211 1111000 011 223445566678999999998777643
Q ss_pred chHHHHHHHHHHHhcCccEEEeec---ccceEEEE
Q 038592 411 RSFYDMLIQEFRDVFQELYEIDVG---NEENFVLI 442 (478)
Q Consensus 411 ~~~~~~v~~~l~~vF~~v~~~~v~---~~~N~Vl~ 442 (478)
.. ..++..++..|..+..++.. ...|+..+
T Consensus 144 ~~--~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 144 EI--EELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp TS--HHHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cH--HHHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 32 37889999999998887742 34455543
No 187
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.0037 Score=65.27 Aligned_cols=137 Identities=20% Similarity=0.235 Sum_probs=97.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-C--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-D--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+||.+..+-|+=+..|.+.. + ..|+++|+|+.=++..+....-..-.++.++..|+..+....
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~------------ 224 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL------------ 224 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc------------
Confidence 4799999999888776777765 3 467999999998888776653222234889999998775431
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCC-CCCCC-------------CChHHHHHHHHHccCcCcEEEEE
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTS-APPVE-------------FVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s-~Pp~~-------------f~~~efl~~~~~~L~~~Gilv~N 405 (478)
....+||.|++|+-++-. |+. --|.. =++.++|..+.+.|+|||.++.-
T Consensus 225 ---------------~~~~~fD~iLlDaPCSg~--G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 225 ---------------PGGEKFDRILLDAPCSGT--GVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred ---------------cccCcCcEEEECCCCCCC--cccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 123369999999966532 321 11211 15789999999999999999998
Q ss_pred eCCCCchHHHHHHHHHHHhcCcc
Q 038592 406 VIPPNRSFYDMLIQEFRDVFQEL 428 (478)
Q Consensus 406 ~~~~~~~~~~~v~~~l~~vF~~v 428 (478)
+.+..++--+.++..+-+-.+.+
T Consensus 288 TCS~~~eENE~vV~~~L~~~~~~ 310 (355)
T COG0144 288 TCSLTPEENEEVVERFLERHPDF 310 (355)
T ss_pred ccCCchhcCHHHHHHHHHhCCCc
Confidence 88776655566676666665554
No 188
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.31 E-value=0.0038 Score=68.20 Aligned_cols=129 Identities=18% Similarity=0.124 Sum_probs=88.5
Q ss_pred CCeEEEEeCchhHHHHHHHh-hCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRT-QLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~-~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+-+|.||+|.|.....++. +++..+.+||+....+..|-+......-.+++++.+|+..+....
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~-------------- 413 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL-------------- 413 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc--------------
Confidence 57899999998885555555 468999999999987776655432222357899888865544331
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
++...|-|++--.++.+..-. ---.+++++|++.+++.|++||.+- +.+.+.+....++..+
T Consensus 414 --------------~~~sv~~i~i~FPDPWpKkrh--~krRl~~~~fl~~~~~~Lk~gG~i~--~~TD~~~y~~~~~~~~ 475 (506)
T PRK01544 414 --------------PNNSLDGIYILFPDPWIKNKQ--KKKRIFNKERLKILQDKLKDNGNLV--FASDIENYFYEAIELI 475 (506)
T ss_pred --------------CcccccEEEEECCCCCCCCCC--ccccccCHHHHHHHHHhcCCCCEEE--EEcCCHHHHHHHHHHH
Confidence 456799999965444432111 1234899999999999999999887 4445556555555555
Q ss_pred HH
Q 038592 422 RD 423 (478)
Q Consensus 422 ~~ 423 (478)
.+
T Consensus 476 ~~ 477 (506)
T PRK01544 476 QQ 477 (506)
T ss_pred Hh
Confidence 44
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.30 E-value=0.0015 Score=66.59 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=64.0
Q ss_pred CeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..++..++|+|+-+..+.+.. ..+|.++|.||++++.|++.+.- ..|++++++|..++.....
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~------------- 85 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLA------------- 85 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHH-------------
Confidence 489999999999998888876 47999999999999999987642 4689999999999865421
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSG 370 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~ 370 (478)
..-..+|.|++|+..+
T Consensus 86 -------------~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 86 -------------EGLGKVDGILLDLGVS 101 (296)
T ss_pred -------------cCCCccCEEEECCCcc
Confidence 0112699999998644
No 190
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.29 E-value=0.0044 Score=62.69 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=101.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+||.+..|-|+=+..+.+.. ...|+++|+++.-+...+..+.-..-..+.+...|+.++....
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~------------- 152 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK------------- 152 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-------------
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-------------
Confidence 4689999999998777777776 3799999999999988776653323456888889999986552
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC-------------CChHHHHHHHHHcc----CcCcEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE-------------FVRKDVLLAARLIL----SDFGIFV 403 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~-------------f~~~efl~~~~~~L----~~~Gilv 403 (478)
....||.|++|+-.+.. +-+.-.|.. .++.+.|..+.+.| +|||.++
T Consensus 153 ---------------~~~~fd~VlvDaPCSg~-G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 153 ---------------PESKFDRVLVDAPCSGL-GTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp ---------------HTTTEEEEEEECSCCCG-GGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEE
T ss_pred ---------------cccccchhhcCCCccch-hhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEE
Confidence 23469999999976542 112222221 15688999999999 9999999
Q ss_pred EEeCCCCchHHHHHHHHHHHhcCccEEEe
Q 038592 404 MNVIPPNRSFYDMLIQEFRDVFQELYEID 432 (478)
Q Consensus 404 ~N~~~~~~~~~~~v~~~l~~vF~~v~~~~ 432 (478)
.-+-+-.++--+.+++.+-+.++.....+
T Consensus 217 YsTCS~~~eENE~vV~~fl~~~~~~~l~~ 245 (283)
T PF01189_consen 217 YSTCSLSPEENEEVVEKFLKRHPDFELVP 245 (283)
T ss_dssp EEESHHHGGGTHHHHHHHHHHSTSEEEEC
T ss_pred EEeccHHHHHHHHHHHHHHHhCCCcEEEe
Confidence 87766555545566776666677655444
No 191
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=97.27 E-value=0.00064 Score=60.62 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=60.2
Q ss_pred CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592 311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL 390 (478)
Q Consensus 311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~ 390 (478)
-+++++++|+.+.+.+ -..++|+|+.|.|++.. .+++.+.++++
T Consensus 31 v~L~L~~gDa~~~l~~-----------------------------l~~~~Da~ylDgFsP~~-------nPelWs~e~~~ 74 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQ-----------------------------LDARFDAWYLDGFSPAK-------NPELWSEELFK 74 (124)
T ss_dssp EEEEEEES-HHHHHHH-----------------------------B-T-EEEEEE-SS-TTT-------SGGGSSHHHHH
T ss_pred EEEEEEEcHHHHHHHh-----------------------------CcccCCEEEecCCCCcC-------CcccCCHHHHH
Confidence 3678999999999987 24689999999998754 34689999999
Q ss_pred HHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHh-cCccEEEeecccceEEEEEEc
Q 038592 391 AARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDV-FQELYEIDVGNEENFVLIATG 445 (478)
Q Consensus 391 ~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~~v~~~~N~Vl~a~~ 445 (478)
.++++++++|+++.. +.... |.+.|.+. | .|...+-....-..+.|++
T Consensus 75 ~l~~~~~~~~~l~Ty--s~a~~----Vr~~L~~aGF-~v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 75 KLARLSKPGGTLATY--SSAGA----VRRALQQAGF-EVEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp HHHHHEEEEEEEEES----BHH----HHHHHHHCTE-EEEEEE-STTSSEEEEEEC
T ss_pred HHHHHhCCCcEEEEe--echHH----HHHHHHHcCC-EEEEcCCCCCcchheEEEc
Confidence 999999999998843 33222 44455555 4 3555553333455566553
No 192
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.25 E-value=0.0021 Score=72.34 Aligned_cols=108 Identities=19% Similarity=0.146 Sum_probs=74.5
Q ss_pred CCeEEEEeCchhHHHH----HHHh----hC-----CCEEEEEECChH---HHHHH-----------HHhc--------CC
Q 038592 263 RPKALCVGVGGGALVS----FLRT----QL-----DFEVVGVEMDEV---VLRVA-----------RQYF--------GL 307 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~----~L~~----~~-----~~~V~~VEiDp~---Vl~vA-----------~~~F--------g~ 307 (478)
.-+|+.+|.|.|.-.. .+.+ .+ ..++..+|.+|. -+..+ ++.. |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 5789999999997222 2211 11 258999998762 22211 1111 11
Q ss_pred C----CCC--CeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCC
Q 038592 308 E----DGE--FLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPV 381 (478)
Q Consensus 308 ~----~d~--rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~ 381 (478)
. ++. +++++++|+.+.+.++ ..++|+|++|.|++.. .+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~-----------------------------~~~~d~~~lD~FsP~~-------np 181 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL-----------------------------DARADAWFLDGFAPAK-------NP 181 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc-----------------------------cccccEEEeCCCCCcc-------Ch
Confidence 0 122 5678999999998762 3569999999998754 34
Q ss_pred CCChHHHHHHHHHccCcCcEEEEEe
Q 038592 382 EFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 382 ~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
++-+.++|..++++++++|+++...
T Consensus 182 ~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 182 DMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred hhccHHHHHHHHHHhCCCCEEEEee
Confidence 6899999999999999999999654
No 193
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.22 E-value=0.0011 Score=66.06 Aligned_cols=60 Identities=30% Similarity=0.315 Sum_probs=50.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHH-HHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRV-ARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~v-A~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
+--||.+|-|+|.|+.-|.+. +.+|.+||+||.++.- .++.-|.+...+++|+++|.+..
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 457999999999999988875 7899999999998875 55555777678999999998764
No 194
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0062 Score=57.64 Aligned_cols=122 Identities=17% Similarity=0.262 Sum_probs=88.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+.=+|.||+|.|....||.+.. +....+.||+|.-+++.++-... +..++.+++.|-..-++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~-n~~~~~~V~tdl~~~l~--------------- 107 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC-NRVHIDVVRTDLLSGLR--------------- 107 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh-cCCccceeehhHHhhhc---------------
Confidence 5679999999999999999975 47889999999999986654322 24568899999888774
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----------------ChHHHHHHHHHccCcCcEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----------------VRKDVLLAARLILSDFGIFV 403 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----------------~~~efl~~~~~~L~~~Gilv 403 (478)
.++.|+++..- .. +..++... ....++..+..+|+|.|+|-
T Consensus 108 ----------------~~~VDvLvfNP---PY---Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Y 165 (209)
T KOG3191|consen 108 ----------------NESVDVLVFNP---PY---VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFY 165 (209)
T ss_pred ----------------cCCccEEEECC---Cc---CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEE
Confidence 26789888732 11 11112211 35678888999999999999
Q ss_pred EEeCCCCchHHHHHHHHHHHh
Q 038592 404 MNVIPPNRSFYDMLIQEFRDV 424 (478)
Q Consensus 404 ~N~~~~~~~~~~~v~~~l~~v 424 (478)
++...++. .++++..++.-
T Consensus 166 lv~~~~N~--p~ei~k~l~~~ 184 (209)
T KOG3191|consen 166 LVALRANK--PKEILKILEKK 184 (209)
T ss_pred eeehhhcC--HHHHHHHHhhc
Confidence 98887754 34566655543
No 195
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.97 E-value=0.0015 Score=63.01 Aligned_cols=96 Identities=25% Similarity=0.297 Sum_probs=70.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
...|+.+-+|-|..+..++++. ...|.++|++|..++..++...+. -..++.++.+|+.+++.
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------------- 166 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------------- 166 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------------
T ss_pred ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------------
Confidence 4699999999999887777754 578999999999999998876543 24679999999999963
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV 403 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv 403 (478)
...+|-|+++. |. .+.+||..+..+++++|++-
T Consensus 167 ----------------~~~~drvim~l------------p~--~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 167 ----------------EGKFDRVIMNL------------PE--SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----------------TT-EEEEEE--------------TS--SGGGGHHHHHHHEEEEEEEE
T ss_pred ----------------ccccCEEEECC------------hH--HHHHHHHHHHHHhcCCcEEE
Confidence 45799999954 21 23579999999999999874
No 196
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.93 E-value=0.0036 Score=62.91 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=73.1
Q ss_pred CCCeEEEEeCchh----HHHHHHHhhC------CCEEEEEECChHHHHHHHHhc-C-------CCCC--CCeEEEEchH-
Q 038592 262 FRPKALCVGVGGG----ALVSFLRTQL------DFEVVGVEMDEVVLRVARQYF-G-------LEDG--EFLQVSVGDA- 320 (478)
Q Consensus 262 ~~~~VLvIGlGgG----~L~~~L~~~~------~~~V~~VEiDp~Vl~vA~~~F-g-------~~~d--~rl~v~v~Dg- 320 (478)
.+.||...||++| ++++.|.+.+ .++|++.|||..+++.|+.-- + ++.. .+.=...+|+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3789999999999 7999998875 379999999999999998521 1 0000 0111122222
Q ss_pred HHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCc
Q 038592 321 IEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFG 400 (478)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~G 400 (478)
.++-+++.+. .-++.++...... ..+.||+|++= +..-.+..+ .....+...+..|+|||
T Consensus 176 y~v~~~ir~~-----------V~F~~~NLl~~~~-~~~~fD~IfCR----NVLIYFd~~----~q~~il~~f~~~L~~gG 235 (268)
T COG1352 176 YRVKEELRKM-----------VRFRRHNLLDDSP-FLGKFDLIFCR----NVLIYFDEE----TQERILRRFADSLKPGG 235 (268)
T ss_pred EEEChHHhcc-----------cEEeecCCCCCcc-ccCCCCEEEEc----ceEEeeCHH----HHHHHHHHHHHHhCCCC
Confidence 1111111000 0022333333222 45679999981 111011111 46889999999999999
Q ss_pred EEEE
Q 038592 401 IFVM 404 (478)
Q Consensus 401 ilv~ 404 (478)
+|++
T Consensus 236 ~Lfl 239 (268)
T COG1352 236 LLFL 239 (268)
T ss_pred EEEE
Confidence 9996
No 197
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.93 E-value=0.0013 Score=65.58 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=52.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
...|+.||.|.|.++..|.+.. .++++||+|+...+.-++.|. .+++++++.+|+.++
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKW 88 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTS
T ss_pred CCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcc
Confidence 5699999999999999998876 899999999999999999887 578999999999987
No 198
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=96.93 E-value=0.0013 Score=63.16 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=33.5
Q ss_pred CCCeEEEEeCchh----HHHHHHHhhC------CCEEEEEECChHHHHHHHH
Q 038592 262 FRPKALCVGVGGG----ALVSFLRTQL------DFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 262 ~~~~VLvIGlGgG----~L~~~L~~~~------~~~V~~VEiDp~Vl~vA~~ 303 (478)
.+.||+..||++| ++++.|.+.. .++|.+.|||+.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 4789999999999 6888888831 3699999999999999975
No 199
>PRK10742 putative methyltransferase; Provisional
Probab=96.80 E-value=0.0051 Score=61.01 Aligned_cols=65 Identities=18% Similarity=0.154 Sum_probs=52.5
Q ss_pred CCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-------C--CCCeEEEEchHHHHHHH
Q 038592 261 GFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-------D--GEFLQVSVGDAIEFLEK 326 (478)
Q Consensus 261 g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-------~--d~rl~v~v~Dg~~~l~~ 326 (478)
|..++||.+=+|.|..+..+... +++|++||-+|.+..+-++-+... . ..|++++.+|+.+|+++
T Consensus 87 g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 87 DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 34569999999999999776654 788999999999999887655421 1 15799999999999976
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.67 E-value=0.033 Score=53.00 Aligned_cols=120 Identities=24% Similarity=0.218 Sum_probs=80.6
Q ss_pred hhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHH---HHHHhcCCCCCCC
Q 038592 237 HVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLR---VARQYFGLEDGEF 312 (478)
Q Consensus 237 ~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~---vA~~~Fg~~~d~r 312 (478)
--|.+-+..++.+++.- . ....+++.||.|+|.=+.-|.=. ++.+++.||-...=+. .+.+.+++ ++
T Consensus 29 ~~~~~Hi~DSL~~~~~~-~-----~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L---~n 99 (184)
T PF02527_consen 29 EIWERHILDSLALLPFL-P-----DFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL---SN 99 (184)
T ss_dssp HHHHHHHHHHHGGGGCS-------CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT----SS
T ss_pred HHHHHHHHHHHHhhhhh-c-----cCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC---CC
Confidence 34555666666665421 1 11338999999999644434333 5789999999987555 44566776 36
Q ss_pred eEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH
Q 038592 313 LQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA 392 (478)
Q Consensus 313 l~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~ 392 (478)
++++.+.+-+ . ....+||+|+.=+.++ -..++..+
T Consensus 100 v~v~~~R~E~--~-----------------------------~~~~~fd~v~aRAv~~--------------l~~l~~~~ 134 (184)
T PF02527_consen 100 VEVINGRAEE--P-----------------------------EYRESFDVVTARAVAP--------------LDKLLELA 134 (184)
T ss_dssp EEEEES-HHH--T-----------------------------TTTT-EEEEEEESSSS--------------HHHHHHHH
T ss_pred EEEEEeeecc--c-----------------------------ccCCCccEEEeehhcC--------------HHHHHHHH
Confidence 9999999888 1 1567899999965432 15788999
Q ss_pred HHccCcCcEEEEEeCCCC
Q 038592 393 RLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 393 ~~~L~~~Gilv~N~~~~~ 410 (478)
...|+++|.+++--....
T Consensus 135 ~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 135 RPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp GGGEEEEEEEEEEESS--
T ss_pred HHhcCCCCEEEEEcCCCh
Confidence 999999999997766543
No 201
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=96.63 E-value=0.0088 Score=60.74 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCeEEEEeCchh----HHHHHHHhhC-----CCEEEEEECChHHHHHHHHh
Q 038592 263 RPKALCVGVGGG----ALVSFLRTQL-----DFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 263 ~~~VLvIGlGgG----~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA~~~ 304 (478)
+.||+..||.+| +++|.|.+.. +++|++.|||+.+++.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 579999999999 6899888853 36899999999999999753
No 202
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.56 E-value=0.012 Score=60.48 Aligned_cols=99 Identities=26% Similarity=0.292 Sum_probs=70.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+-||.+|+|.|.|.+|..+.-..+|.+||.++ |.+.|++-..- .-.+|+.|+-|-..+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi------------------ 238 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI------------------ 238 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc------------------
Confidence 467899999999999998877567999999874 67777765432 1246888887765443
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH---HHHHHccCcCcEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL---LAARLILSDFGIFVM 404 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl---~~~~~~L~~~Gilv~ 404 (478)
.-.++.|+||.. +++.| |+++..| ..+++.|+|+|.+.=
T Consensus 239 -------------eLPEk~DviISE-----PMG~m------L~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 239 -------------ELPEKVDVIISE-----PMGYM------LVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred -------------cCchhccEEEec-----cchhh------hhhHHHHHHHHHHHhhcCCCCcccC
Confidence 145789999983 33222 4555444 456789999997753
No 203
>PRK04148 hypothetical protein; Provisional
Probab=96.45 E-value=0.0095 Score=53.83 Aligned_cols=53 Identities=21% Similarity=0.286 Sum_probs=44.3
Q ss_pred CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
..++|+||+|.|. ++..|.+ .+.+|+++|++|..++.|++. .++++++|..+-
T Consensus 17 ~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p 70 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKAVEKAKKL-------GLNAFVDDLFNP 70 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHHHHHHHHh-------CCeEEECcCCCC
Confidence 4789999999995 8888875 488999999999999999776 257888887753
No 204
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.031 Score=56.04 Aligned_cols=127 Identities=21% Similarity=0.194 Sum_probs=87.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
...|+.-|.|.|+++.++.+.. ..++...|.++.-.+-|++.|.-. -+.++++.+.|.-.- .|
T Consensus 106 GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~--------------GF 171 (314)
T KOG2915|consen 106 GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGS--------------GF 171 (314)
T ss_pred CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccC--------------Cc
Confidence 3589999999999999998875 479999999999999999998533 346788888775321 11
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
+ .....+|+|++|+-+++ +.+-.+..+|+.+|.-++++. +--+..+...+
T Consensus 172 ~--------------~ks~~aDaVFLDlPaPw---------------~AiPha~~~lk~~g~r~csFS-PCIEQvqrtce 221 (314)
T KOG2915|consen 172 L--------------IKSLKADAVFLDLPAPW---------------EAIPHAAKILKDEGGRLCSFS-PCIEQVQRTCE 221 (314)
T ss_pred c--------------ccccccceEEEcCCChh---------------hhhhhhHHHhhhcCceEEecc-HHHHHHHHHHH
Confidence 1 13567999999985543 344445668988887666653 22344455555
Q ss_pred HHHH-hcCccEEEee
Q 038592 420 EFRD-VFQELYEIDV 433 (478)
Q Consensus 420 ~l~~-vF~~v~~~~v 433 (478)
.|++ =|-++..+.+
T Consensus 222 ~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 222 ALRSLGFIEIETVEV 236 (314)
T ss_pred HHHhCCCceEEEEEe
Confidence 6665 3665554443
No 205
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.37 E-value=0.017 Score=58.80 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=68.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHH---HHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLR---VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~---vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
.++||.||+|.|+..-.+...-...|.++|-++.-.- .++++.|. +. .......|++.+..
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~--~~-~~~~lplgvE~Lp~------------- 179 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ--DP-PVFELPLGVEDLPN------------- 179 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC--Cc-cEEEcCcchhhccc-------------
Confidence 5799999999999775555443468999998876554 44566553 22 23334567777632
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
.+.||+||.= .--+ .+..| -+.|..+++.|++||.+++...
T Consensus 180 -----------------~~~FDtVF~M--GVLY--Hrr~P------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 180 -----------------LGAFDTVFSM--GVLY--HRRSP------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -----------------cCCcCEEEEe--eehh--ccCCH------HHHHHHHHHhhCCCCEEEEEEe
Confidence 4579999981 0000 01223 6789999999999999998553
No 206
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=96.24 E-value=0.0067 Score=56.60 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=44.5
Q ss_pred eEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHH
Q 038592 265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEK 326 (478)
Q Consensus 265 ~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~ 326 (478)
.|+.+.+|.|+-+..+++. ..+|++||+||.-++.|+.....- ..++++++++|..+++++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~ 63 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR 63 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh
Confidence 4677888888877666665 358999999999999999765321 257899999999998754
No 207
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.22 E-value=0.0085 Score=62.06 Aligned_cols=146 Identities=19% Similarity=0.268 Sum_probs=88.5
Q ss_pred CCCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc-CCC---------CCCCeEEEEchHHHH-HHHHHh
Q 038592 262 FRPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF-GLE---------DGEFLQVSVGDAIEF-LEKLAR 329 (478)
Q Consensus 262 ~~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F-g~~---------~d~rl~v~v~Dg~~~-l~~~~~ 329 (478)
...+||.||+| ||=|..|.... -..++++||+++.++-|++.. .+. .+-...++.+|...- |.+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~-- 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREK-- 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCT--
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhh--
Confidence 36799999999 66688887642 369999999999999998655 110 012346677777632 1110
Q ss_pred hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC----hHHHHHHHHHccCcCcEEEEE
Q 038592 330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV----RKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~----~~efl~~~~~~L~~~Gilv~N 405 (478)
-.....+||+|=+=. |-.-.|- -..||+++.+.|+|||+|+.-
T Consensus 139 -----------------------~~~~~~~FDvVScQF----------alHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 139 -----------------------LPPRSRKFDVVSCQF----------ALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp -----------------------SSSTTS-EEEEEEES-----------GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred -----------------------ccccCCCcceeehHH----------HHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 001236899998821 1122232 356999999999999999977
Q ss_pred eCCCCchHHHHHHHHHHH--------hcC-ccEEEeeccc------ceEEEEEEcCCC
Q 038592 406 VIPPNRSFYDMLIQEFRD--------VFQ-ELYEIDVGNE------ENFVLIATGLSI 448 (478)
Q Consensus 406 ~~~~~~~~~~~v~~~l~~--------vF~-~v~~~~v~~~------~N~Vl~a~~~~~ 448 (478)
+++. ..++.+|++ .|+ .+|.+....+ ++...|.....+
T Consensus 186 ~~d~-----~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v 238 (331)
T PF03291_consen 186 TPDS-----DEIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAV 238 (331)
T ss_dssp EE-H-----HHHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCS
T ss_pred ecCH-----HHHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcC
Confidence 6543 233455555 233 4777776555 666666654443
No 208
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=96.20 E-value=0.031 Score=55.78 Aligned_cols=94 Identities=24% Similarity=0.278 Sum_probs=65.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..++|.||.|.|..+.-+..++ .+|.+-|+++.|...-++. | .+|+ |..+|- +
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~~k-g------~~vl--~~~~w~-~---------------- 147 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLSKK-G------FTVL--DIDDWQ-Q---------------- 147 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHHhC-C------CeEE--ehhhhh-c----------------
Confidence 5689999999999998887665 3699999999997654432 3 2344 233341 1
Q ss_pred cccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
.+.+||+|.+ .+- |- | .--...|+.+++.|+|+|++++-++
T Consensus 148 -------------~~~~fDvIscLNvL--DR-----c----~~P~~LL~~i~~~l~p~G~lilAvV 189 (265)
T PF05219_consen 148 -------------TDFKFDVISCLNVL--DR-----C----DRPLTLLRDIRRALKPNGRLILAVV 189 (265)
T ss_pred -------------cCCceEEEeehhhh--hc-----c----CCHHHHHHHHHHHhCCCCEEEEEEE
Confidence 3567999986 111 10 0 1126789999999999999998664
No 209
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.16 E-value=0.011 Score=61.03 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+.||.+|+|+|.|++|.++....+|.+||.+... +.|++-+... -+..++++.+..-+. ++
T Consensus 61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-------------- 123 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--EL-------------- 123 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ec--------------
Confidence 57899999999999999999877899999988776 8887765432 234677777766555 21
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH----HHccCcCcEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA----RLILSDFGIFV 403 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~----~~~L~~~Gilv 403 (478)
+-+++|+|+..-- | -.++-++.|..+ -+.|+|||++.
T Consensus 124 --------------P~eKVDiIvSEWM------G-----y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 124 --------------PVEKVDIIVSEWM------G-----YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred --------------CccceeEEeehhh------h-----HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 4578999998421 1 112334444433 36799999875
No 210
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.053 Score=58.20 Aligned_cols=111 Identities=22% Similarity=0.203 Sum_probs=82.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..+++.+=||.|..+..|.+. ..+|.+||++++.++.|++.-....-.+++++.+|+.++..+.
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~--------------- 357 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW--------------- 357 (432)
T ss_pred CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc---------------
Confidence 468999999999999888843 4799999999999999998876554456999999999998652
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDM 416 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~ 416 (478)
.....+|+|++| ||-.=.++++++.+.+.-.+ . |+.+.|....+.+.
T Consensus 358 ------------~~~~~~d~VvvD------------PPR~G~~~~~lk~l~~~~p~-~--IvYVSCNP~TlaRD 404 (432)
T COG2265 358 ------------WEGYKPDVVVVD------------PPRAGADREVLKQLAKLKPK-R--IVYVSCNPATLARD 404 (432)
T ss_pred ------------cccCCCCEEEEC------------CCCCCCCHHHHHHHHhcCCC-c--EEEEeCCHHHHHHH
Confidence 134679999997 33333567888887765543 3 45566664444433
No 211
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.05 E-value=0.04 Score=54.45 Aligned_cols=106 Identities=23% Similarity=0.194 Sum_probs=57.5
Q ss_pred CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.++||++|=..-. ++..| .+++.+|++||||+.+++.-++...- .+-.++.+..|.++=+.+
T Consensus 45 gk~il~lGDDDLtSlA~al-~~~~~~I~VvDiDeRll~fI~~~a~~-~gl~i~~~~~DlR~~LP~--------------- 107 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALAL-TGLPKRITVVDIDERLLDFINRVAEE-EGLPIEAVHYDLRDPLPE--------------- 107 (243)
T ss_dssp T-EEEEES-TT-HHHHHHH-HT--SEEEEE-S-HHHHHHHHHHHHH-HT--EEEE---TTS---T---------------
T ss_pred CCEEEEEcCCcHHHHHHHh-hCCCCeEEEEEcCHHHHHHHHHHHHH-cCCceEEEEecccccCCH---------------
Confidence 5899999977654 55444 34578999999999999865543211 112399999999887643
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-HHHHHHHHHccCcCc-EEEEEeCCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-KDVLLAARLILSDFG-IFVMNVIPPN 410 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-~efl~~~~~~L~~~G-ilv~N~~~~~ 410 (478)
.-..+||+++.| ||...-. .-|+....+.|+..| ...+.+....
T Consensus 108 -------------~~~~~fD~f~TD------------PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~ 153 (243)
T PF01861_consen 108 -------------ELRGKFDVFFTD------------PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE 153 (243)
T ss_dssp -------------TTSS-BSEEEE---------------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT
T ss_pred -------------HHhcCCCEEEeC------------CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCc
Confidence 145789999997 3432211 458888889998766 5555555443
No 212
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.04 E-value=0.013 Score=57.52 Aligned_cols=38 Identities=24% Similarity=0.187 Sum_probs=32.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRV 300 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~v 300 (478)
...||.+|+|+|.++.++.+....+|++||+++.++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 46899999999999999988744699999999977765
No 213
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=95.97 E-value=0.02 Score=59.16 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=68.4
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
...+.+|+|.|.+...+..+++ +|.+|+.|..-+..+..+++ + .++-+.+|+++=+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~~------------------- 234 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQDT------------------- 234 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc-C---CcceecccccccC-------------------
Confidence 4678899999998888777543 59999999887777777765 2 2677777877532
Q ss_pred ccCCCccCCCCCCCCceeEEEE-----eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE--EeCCC
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMV-----DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM--NVIPP 409 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIiv-----Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~--N~~~~ 409 (478)
++-|+|++ |..+.| -..||++|++.|.|+|.+++ |+.+.
T Consensus 235 --------------P~~daI~mkWiLhdwtDed-------------cvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 235 --------------PKGDAIWMKWILHDWTDED-------------CVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred --------------CCcCeEEEEeecccCChHH-------------HHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 23458887 332222 26899999999999998876 65553
No 214
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.92 E-value=0.026 Score=61.77 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=45.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhC---------CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQL---------DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~---------~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
..+||..|+|+|.+...+..+. ...+.++|||+..+..|+..+........+++.+|.+..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~ 101 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY 101 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc
Confidence 5699999999998766555432 158899999999999998765433233467777777754
No 215
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.91 E-value=0.07 Score=54.82 Aligned_cols=105 Identities=22% Similarity=0.196 Sum_probs=68.8
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||+|.| .|.++...++.++ .+|.++|+++.-+++|++ ||...- ...-..+-.+.+.+.....
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~--~~~~~~~~~~~~~~~v~~~--------- 237 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVT--DPSSHKSSPQELAELVEKA--------- 237 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEE--eeccccccHHHHHHHHHhh---------
Confidence 5699999999 6777877777786 699999999999999999 887421 1111212233444433221
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..+..+|+.|- .++- ...++.+-..++.+|.+++--+..
T Consensus 238 --------------~g~~~~d~~~d--CsG~--------------~~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 238 --------------LGKKQPDVTFD--CSGA--------------EVTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred --------------ccccCCCeEEE--ccCc--------------hHHHHHHHHHhccCCEEEEeccCC
Confidence 12345887775 2221 346777889999999965544433
No 216
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=0.02 Score=61.79 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=97.4
Q ss_pred hcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh----C-CCEEEEEECChHHHHHHHHhcCCC-CCC
Q 038592 238 VYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ----L-DFEVVGVEMDEVVLRVARQYFGLE-DGE 311 (478)
Q Consensus 238 ~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~----~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~ 311 (478)
.|.+++..+|.=..+. .++.+...++++|+|-|=|.....+. . .+++.+||-+|..+-.-+. -.+. .+.
T Consensus 347 ~Yq~Ai~~AL~Drvpd----~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~ 421 (649)
T KOG0822|consen 347 QYQQAILKALLDRVPD----ESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDN 421 (649)
T ss_pred HHHHHHHHHHHhhCcc----cccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcC
Confidence 4667777775422221 11122567889999999877654443 1 3799999999987765543 2322 478
Q ss_pred CeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHH
Q 038592 312 FLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLA 391 (478)
Q Consensus 312 rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~ 391 (478)
+++++-+|.+.|- .+..+.|+|+..+-.+.. ..=+++|.|.-
T Consensus 422 ~Vtii~~DMR~w~------------------------------ap~eq~DI~VSELLGSFG--------DNELSPECLDG 463 (649)
T KOG0822|consen 422 RVTIISSDMRKWN------------------------------APREQADIIVSELLGSFG--------DNELSPECLDG 463 (649)
T ss_pred eeEEEeccccccC------------------------------CchhhccchHHHhhcccc--------CccCCHHHHHH
Confidence 9999999999993 124678999876644432 12267999999
Q ss_pred HHHccCcCcEEEEEeCC----C--CchHHHHHHHHHHH--hcCccEEEe
Q 038592 392 ARLILSDFGIFVMNVIP----P--NRSFYDMLIQEFRD--VFQELYEID 432 (478)
Q Consensus 392 ~~~~L~~~Gilv~N~~~----~--~~~~~~~v~~~l~~--vF~~v~~~~ 432 (478)
+.+.|+|+|+.+=.-.. + ++.+++. +..+.. .|...|...
T Consensus 464 ~q~fLkpdgIsIP~sYtSyi~PImS~~l~q~-v~a~~~~~~fe~~YVV~ 511 (649)
T KOG0822|consen 464 AQKFLKPDGISIPSSYTSYIAPIMSPKLYQE-VKATNDPNAFEAPYVVL 511 (649)
T ss_pred HHhhcCCCceEccchhhhhhcccccHHHHHH-HHhcCCccccccceEEE
Confidence 99999999998732211 1 3333333 344444 677666544
No 217
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.63 E-value=0.029 Score=58.12 Aligned_cols=110 Identities=22% Similarity=0.164 Sum_probs=72.6
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEc-hHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVG-DAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~-Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..||.==||+|+...... .++.++.+.|||..|++-|+..+..-.-+...++.. |+... .
T Consensus 199 ~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~l-p----------------- 259 (347)
T COG1041 199 ELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNL-P----------------- 259 (347)
T ss_pred CEeecCcCCccHHHHhhh-hcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccC-C-----------------
Confidence 478887889898664433 348999999999999999996553211122333333 76643 1
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC--CChHHHHHHHHHccCcCcEEEEEeC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE--FVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~--f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
-.+..+|+|+.|..=+-.+. ..... =+-.++|+.+.+.|++||.+++...
T Consensus 260 ------------l~~~~vdaIatDPPYGrst~---~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 ------------LRDNSVDAIATDPPYGRSTK---IKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ------------CCCCccceEEecCCCCcccc---cccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 13457999999864332210 01111 1237899999999999999997665
No 218
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.61 E-value=0.11 Score=54.11 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=89.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
...|+..=.|-|..+.-++.+-..+|.++||+|.-++..++...+.. ..++..+.+|+.+++.+
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~--------------- 253 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE--------------- 253 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc---------------
Confidence 46899999999987766666544459999999999999999987753 35699999999999744
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
-..+|-|++-. |+ .+.+|+..+.++|+++|++-+....++..........+
T Consensus 254 ---------------~~~aDrIim~~-----------p~---~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i 304 (341)
T COG2520 254 ---------------LGVADRIIMGL-----------PK---SAHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRI 304 (341)
T ss_pred ---------------cccCCEEEeCC-----------CC---cchhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHH
Confidence 15689999932 11 34789999999999999999887777555332234444
Q ss_pred HHhc
Q 038592 422 RDVF 425 (478)
Q Consensus 422 ~~vF 425 (478)
++..
T Consensus 305 ~~~~ 308 (341)
T COG2520 305 KSAA 308 (341)
T ss_pred HHHH
Confidence 4444
No 219
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=95.46 E-value=0.15 Score=51.62 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=84.7
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+|+|+|+| ||+++++|+..- ...|+++|.+..-.+.|. .+|..... .+.... .
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~-~lgv~d~~------~~~~~~--~------------- 60 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAAL-ELGVIDEL------TVAGLA--E------------- 60 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHh-hcCccccc------ccchhh--h-------------
Confidence 4689999999 899999999863 567888888888888874 35543110 011101 1
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
.....|+||+-+ |.. .+.++++.+...|++ |.+++.+.+-. ..+++
T Consensus 61 ----------------~~~~aD~Vivav------------Pi~-~~~~~l~~l~~~l~~-g~iv~Dv~S~K----~~v~~ 106 (279)
T COG0287 61 ----------------AAAEADLVIVAV------------PIE-ATEEVLKELAPHLKK-GAIVTDVGSVK----SSVVE 106 (279)
T ss_pred ----------------hcccCCEEEEec------------cHH-HHHHHHHHhcccCCC-CCEEEeccccc----HHHHH
Confidence 234589999933 222 578899999998988 55666776653 44566
Q ss_pred HHHHhcCc----cEEEeecc-------cceEEEEEEcCCCC
Q 038592 420 EFRDVFQE----LYEIDVGN-------EENFVLIATGLSIV 449 (478)
Q Consensus 420 ~l~~vF~~----v~~~~v~~-------~~N~Vl~a~~~~~~ 449 (478)
.+.+..+. +-..|+.+ ..|.+++-++.+..
T Consensus 107 a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~ 147 (279)
T COG0287 107 AMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGT 147 (279)
T ss_pred HHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCC
Confidence 77777754 22233322 25677777766644
No 220
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.43 E-value=0.13 Score=52.83 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=61.6
Q ss_pred CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..++..=+|+|+-+.++.+.+ +.+|.++|.||..++.|++.+. ...+|++++.++-.++.+.+..
T Consensus 22 giyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~-~~~~R~~~i~~nF~~l~~~l~~------------- 87 (305)
T TIGR00006 22 GIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS-DFEGRVVLIHDNFANFFEHLDE------------- 87 (305)
T ss_pred CEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh-hcCCcEEEEeCCHHHHHHHHHh-------------
Confidence 467778888888887777765 5899999999999999998653 1246899999999988655422
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDS 369 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s 369 (478)
....++|.|+.|+--
T Consensus 88 ------------~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 88 ------------LLVTKIDGILVDLGV 102 (305)
T ss_pred ------------cCCCcccEEEEeccC
Confidence 123569999999843
No 221
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.38 E-value=0.038 Score=55.61 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=35.2
Q ss_pred CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592 262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVAR 302 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~ 302 (478)
.+.+|||=|+|-|-|+-.|... +..+++.|.+--|+=...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~ 95 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASN 95 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHH
Confidence 3689999999999999999876 889999999999976654
No 222
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.21 E-value=0.058 Score=56.30 Aligned_cols=127 Identities=24% Similarity=0.305 Sum_probs=74.6
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
.++|.+=+|.|.++..|... ..+|++||+++..++.|++...+..-.+++++.+++-++...... .+.+..
T Consensus 198 ~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~------~r~~~~-- 268 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK------AREFNR-- 268 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC------S-GGTT--
T ss_pred CcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh------hHHHHh--
Confidence 48999999999999888765 359999999999999999888765556899999998877543211 000000
Q ss_pred ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHH
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRD 423 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~ 423 (478)
..........+|+|++| ||-.=..+.+++.+.+ ++ =++.+.|....+.+. +..|.+
T Consensus 269 ------~~~~~~~~~~~d~vilD------------PPR~G~~~~~~~~~~~-~~----~ivYvSCnP~tlaRD-l~~L~~ 324 (352)
T PF05958_consen 269 ------LKGIDLKSFKFDAVILD------------PPRAGLDEKVIELIKK-LK----RIVYVSCNPATLARD-LKILKE 324 (352)
T ss_dssp ------GGGS-GGCTTESEEEE---------------TT-SCHHHHHHHHH-SS----EEEEEES-HHHHHHH-HHHHHC
T ss_pred ------hhhhhhhhcCCCEEEEc------------CCCCCchHHHHHHHhc-CC----eEEEEECCHHHHHHH-HHHHhh
Confidence 00000123469999997 3333345778887764 33 245676664444333 334544
No 223
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.20 E-value=0.35 Score=47.21 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=91.1
Q ss_pred chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHH---HHHHHhcCCCCC
Q 038592 236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVL---RVARQYFGLEDG 310 (478)
Q Consensus 236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl---~vA~~~Fg~~~d 310 (478)
.--|.+-+..++.+.... . ..+.+++.||.|+|. ++..+. .++.+|+.+|-...=+ +.+.+-+++
T Consensus 47 ~e~~~rHilDSl~~~~~~-~-----~~~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L--- 116 (215)
T COG0357 47 EELWQRHILDSLVLLPYL-D-----GKAKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGL--- 116 (215)
T ss_pred HHHHHHHHHHHhhhhhcc-c-----ccCCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCC---
Confidence 344566666665554321 0 015799999999995 444332 3577899999887644 455566665
Q ss_pred CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCc-eeEEEEeCCCCCCCCCCCCCCCCCChHHHH
Q 038592 311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNK-FDVIMVDLDSGDARNGTSAPPVEFVRKDVL 389 (478)
Q Consensus 311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-yDvIivDv~s~d~~~g~s~Pp~~f~~~efl 389 (478)
++++++++.+-+|-. ..+ ||+|..-+..+ -..+.
T Consensus 117 ~nv~i~~~RaE~~~~-------------------------------~~~~~D~vtsRAva~--------------L~~l~ 151 (215)
T COG0357 117 ENVEIVHGRAEEFGQ-------------------------------EKKQYDVVTSRAVAS--------------LNVLL 151 (215)
T ss_pred CCeEEehhhHhhccc-------------------------------ccccCcEEEeehccc--------------hHHHH
Confidence 569999999888832 223 99999965432 14577
Q ss_pred HHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcC---ccEEEeec
Q 038592 390 LAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQ---ELYEIDVG 434 (478)
Q Consensus 390 ~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~---~v~~~~v~ 434 (478)
+-+...|++||.++........+.....-..+..... .++.+.+.
T Consensus 152 e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 152 ELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred HHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 8888999999988765555444444444444444432 34444443
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=95.12 E-value=0.072 Score=54.03 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=70.9
Q ss_pred CCeEEEEeCchhHHHHHHHhh--------CCCEEEEEECChHHHHHHHHhcCCCC--CCCeEEEEchHHHHHHHHHhhhc
Q 038592 263 RPKALCVGVGGGALVSFLRTQ--------LDFEVVGVEMDEVVLRVARQYFGLED--GEFLQVSVGDAIEFLEKLARQIV 332 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~--------~~~~V~~VEiDp~Vl~vA~~~Fg~~~--d~rl~v~v~Dg~~~l~~~~~~~~ 332 (478)
..+|+.-.||+|++...+.++ ...++.++|+|+..+.+|+-.+-+.. .....+..+|.+.--..
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~------ 120 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKF------ 120 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSC------
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccc------
Confidence 457999999999976665553 35799999999999999986543322 23356888887643110
Q ss_pred CCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCC-C-C---------CCCCCCCCCChHHHHHHHHHccCcCcE
Q 038592 333 GKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDA-R-N---------GTSAPPVEFVRKDVLLAARLILSDFGI 401 (478)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~-~-~---------g~s~Pp~~f~~~efl~~~~~~L~~~Gi 401 (478)
....+||+|+....=+.. . . ....++..-.+..|++.+.+.|+++|.
T Consensus 121 ----------------------~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 121 ----------------------IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGR 178 (311)
T ss_dssp ----------------------TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEE
T ss_pred ----------------------ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccc
Confidence 024689999986421111 0 0 000112222345699999999999998
Q ss_pred EEEEeC
Q 038592 402 FVMNVI 407 (478)
Q Consensus 402 lv~N~~ 407 (478)
+++=+.
T Consensus 179 ~~~Ilp 184 (311)
T PF02384_consen 179 AAIILP 184 (311)
T ss_dssp EEEEEE
T ss_pred eeEEec
Confidence 776554
No 225
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.10 E-value=0.078 Score=54.42 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=76.5
Q ss_pred CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcC-CCC-C----CCeEEEEchHHHH-HHHHHhhhcCC
Q 038592 263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-LED-G----EFLQVSVGDAIEF-LEKLARQIVGK 334 (478)
Q Consensus 263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~-d----~rl~v~v~Dg~~~-l~~~~~~~~~~ 334 (478)
...++++|||-|+ |..|.... =..+.++||-+.-++-|++... ... . =...++.+|...- |.+..
T Consensus 118 ~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~------ 190 (389)
T KOG1975|consen 118 GDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL------ 190 (389)
T ss_pred ccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc------
Confidence 3578999999555 65554322 2489999999999999985432 110 1 1367888887653 32221
Q ss_pred CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh----HHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR----KDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~----~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
+..+.+||+|=+-- |-.-.|-+ .-+|.++.++|+|||+|+-.+...
T Consensus 191 -------------------e~~dp~fDivScQF----------~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds- 240 (389)
T KOG1975|consen 191 -------------------EFKDPRFDIVSCQF----------AFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS- 240 (389)
T ss_pred -------------------cCCCCCcceeeeee----------eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH-
Confidence 11345588886621 11223333 458999999999999999766544
Q ss_pred chHHHHHHHHHHHh
Q 038592 411 RSFYDMLIQEFRDV 424 (478)
Q Consensus 411 ~~~~~~v~~~l~~v 424 (478)
+.++.+|++.
T Consensus 241 ----d~Ii~rlr~~ 250 (389)
T KOG1975|consen 241 ----DVIIKRLRAG 250 (389)
T ss_pred ----HHHHHHHHhc
Confidence 2356667665
No 226
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.09 E-value=0.19 Score=50.99 Aligned_cols=125 Identities=16% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCCCeEEEEeCchhH-HHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 261 GFRPKALCVGVGGGA-LVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 261 g~~~~VLvIGlGgG~-L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
|.|.+||.|-+|.|- +--.+.+++. .+|..+|.+|.-++..++...-. -.+-+++..+|+.+.- +++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~-~l~-------- 204 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD-SLA-------- 204 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh-Hhh--------
Confidence 568999999999885 4455666664 69999999999999888664321 1234599999999862 211
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh----HHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR----KDVLLAARLILSDFGIFVMNVIPPNRS 412 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~----~efl~~~~~~L~~~Gilv~N~~~~~~~ 412 (478)
.-..+++++|+- |+. +-|-+ ..-+.-+.++|.|||.+|.---+-++.
T Consensus 205 ------------------~l~p~P~l~iVs--------GL~---ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 205 ------------------ALDPAPTLAIVS--------GLY---ELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred ------------------ccCCCCCEEEEe--------cch---hhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 135678999981 321 22222 446777889999999999755444444
Q ss_pred HHHHHHHHHHHh
Q 038592 413 FYDMLIQEFRDV 424 (478)
Q Consensus 413 ~~~~v~~~l~~v 424 (478)
.+++...|..+
T Consensus 256 -le~IAr~LtsH 266 (311)
T PF12147_consen 256 -LEMIARVLTSH 266 (311)
T ss_pred -hHHHHHHHhcc
Confidence 34455555443
No 227
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.06 E-value=0.18 Score=52.41 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=77.0
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
..++|.||++.|+.+..|.+. +.+|++||..+.--. +..+++++.+.+|++.|..
T Consensus 212 g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~~~-------L~~~~~V~h~~~d~fr~~p----------------- 266 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMAQS-------LMDTGQVEHLRADGFKFRP----------------- 266 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcCHh-------hhCCCCEEEEeccCcccCC-----------------
Confidence 569999999999999888876 679999996653222 2357999999999999841
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcC--cEEEEEeCCCCc---hHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDF--GIFVMNVIPPNR---SFYDML 417 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~--Gilv~N~~~~~~---~~~~~v 417 (478)
....+|++++|+-. .| ...++.+.+.|..| .-+|+|+--+.. +.....
T Consensus 267 -------------~~~~vDwvVcDmve---------~P-----~rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~ 319 (357)
T PRK11760 267 -------------PRKNVDWLVCDMVE---------KP-----ARVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQC 319 (357)
T ss_pred -------------CCCCCCEEEEeccc---------CH-----HHHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHH
Confidence 25679999999642 34 34667777777654 477888844322 223334
Q ss_pred HHHHHHhc
Q 038592 418 IQEFRDVF 425 (478)
Q Consensus 418 ~~~l~~vF 425 (478)
++.+.+.+
T Consensus 320 l~~i~~~l 327 (357)
T PRK11760 320 LELIEEQL 327 (357)
T ss_pred HHHHHHHH
Confidence 44555544
No 228
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=94.97 E-value=0.14 Score=52.29 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=59.7
Q ss_pred CeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.-.+..=+|+|+-+..+.+.++ .+++++|-||..++.|++.+.- -++|++++.+.-..+-..+..
T Consensus 25 giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~-~~~r~~~v~~~F~~l~~~l~~------------ 91 (314)
T COG0275 25 GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE-FDGRVTLVHGNFANLAEALKE------------ 91 (314)
T ss_pred cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc-cCCcEEEEeCcHHHHHHHHHh------------
Confidence 4566677888888888877763 6899999999999999987632 247999999886665443321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDS 369 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s 369 (478)
....++|-|++|+--
T Consensus 92 -------------~~i~~vDGiL~DLGV 106 (314)
T COG0275 92 -------------LGIGKVDGILLDLGV 106 (314)
T ss_pred -------------cCCCceeEEEEeccC
Confidence 135689999999853
No 229
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.29 Score=47.41 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=85.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~~~~~~~~~ 338 (478)
..+|+.||.--|+++..+.++.+ .+|.+||++|.-. -+.+..+.+|... ...++...
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~-------- 106 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEA-------- 106 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHH--------
Confidence 46899999999999999999864 5799999998532 2335666665543 22222111
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCC----CChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVE----FVRKDVLLAARLILSDFGIFVMNVIPPNRSFY 414 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~----f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~ 414 (478)
....++|+|+.|.... +.|+..- .+ -+....++.+...|+++|.|++=+.--. . .
T Consensus 107 ----------------l~~~~~DvV~sD~ap~--~~g~~~~-Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~-~-~ 165 (205)
T COG0293 107 ----------------LGGAPVDVVLSDMAPN--TSGNRSV-DHARSMYLCELALEFALEVLKPGGSFVAKVFQGE-D-F 165 (205)
T ss_pred ----------------cCCCCcceEEecCCCC--cCCCccc-cHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC-C-H
Confidence 1344589999997542 2233211 11 1334556677789999999998554331 1 4
Q ss_pred HHHHHHHHHhcCccEEEee
Q 038592 415 DMLIQEFRDVFQELYEIDV 433 (478)
Q Consensus 415 ~~v~~~l~~vF~~v~~~~v 433 (478)
..++..+++.|..|.....
T Consensus 166 ~~~l~~~~~~F~~v~~~KP 184 (205)
T COG0293 166 EDLLKALRRLFRKVKIFKP 184 (205)
T ss_pred HHHHHHHHHhhceeEEecC
Confidence 5678999999998876654
No 230
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.80 E-value=0.28 Score=51.04 Aligned_cols=99 Identities=23% Similarity=0.151 Sum_probs=69.9
Q ss_pred eEEEEeCc-hhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEc-hHHHHHHHHHhhhcCCCCCCCCc
Q 038592 265 KALCVGVG-GGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVG-DAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 265 ~VLvIGlG-gG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~-Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+|+|+|.| -|.++..+.+..+ .+|.++|+++.-++.|+++++... +...-. |...-+.+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~---~~~~~~~~~~~~~~~~t------------- 234 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADV---VVNPSEDDAGAEILELT------------- 234 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeE---eecCccccHHHHHHHHh-------------
Confidence 89999999 6888777777775 699999999999999999987531 111111 3444333321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
....+|++|- .++ ....+..+.+.++++|.+++.-+..
T Consensus 235 --------------~g~g~D~vie--~~G--------------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 235 --------------GGRGADVVIE--AVG--------------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred --------------CCCCCCEEEE--CCC--------------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 2346999987 222 2458999999999999998755443
No 231
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.74 E-value=0.08 Score=47.72 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=38.8
Q ss_pred CCeEEEEeCchhHHHHHHHh-----hCCCEEEEEECChHHHHHHHHhc
Q 038592 263 RPKALCVGVGGGALVSFLRT-----QLDFEVVGVEMDEVVLRVARQYF 305 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~-----~~~~~V~~VEiDp~Vl~vA~~~F 305 (478)
+..|+.+|+|-|.|+++|.. .++.+|.+||.++..++.|.++-
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~ 73 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRA 73 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHH
Confidence 67999999999999999998 55789999999999999988764
No 232
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.74 E-value=0.043 Score=54.18 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCeEEEEeCchhHHHHHHHh-hCC--CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRT-QLD--FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~-~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
+.++|.||+|.|.+.-=|.+ ..+ ..|.++|-+|.-+++-+++-++.+ .++...+-|.-.= ...
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~-------------~~~ 137 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSP-------------SLK 137 (264)
T ss_pred hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccch-------------hcc
Confidence 34899999999975533444 444 899999999999999998876543 3333333332110 000
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
.+.....+|+|.+ +|- +|+.+++ --...+.+++++|+|||.+++==.+
T Consensus 138 -------------~~~~~~svD~it~-IFv------LSAi~pe-k~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 138 -------------EPPEEGSVDIITL-IFV------LSAIHPE-KMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred -------------CCCCcCccceEEE-EEE------EeccChH-HHHHHHHHHHHHhCCCcEEEEeecc
Confidence 0124566887765 111 1222222 3477899999999999999874333
No 233
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=94.66 E-value=0.15 Score=50.37 Aligned_cols=116 Identities=21% Similarity=0.301 Sum_probs=78.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECCh----HHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDE----VVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp----~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
..+||=+|.+.|+..+.+.... ..-|.+||.++ +++.+|++. +++--+++||+.--+-
T Consensus 157 GsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------tNiiPIiEDArhP~KY---------- 220 (317)
T KOG1596|consen 157 GSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------TNIIPIIEDARHPAKY---------- 220 (317)
T ss_pred CceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------CCceeeeccCCCchhe----------
Confidence 4699999999999888888765 46899999886 566677665 5677788888742110
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC--C----
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP--N---- 410 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~--~---- 410 (478)
...-.-.|+||.|+..+|. ..-.-.++...|+++|-|++.+-.. +
T Consensus 221 -----------------RmlVgmVDvIFaDvaqpdq------------~RivaLNA~~FLk~gGhfvisikancidstv~ 271 (317)
T KOG1596|consen 221 -----------------RMLVGMVDVIFADVAQPDQ------------ARIVALNAQYFLKNGGHFVISIKANCIDSTVF 271 (317)
T ss_pred -----------------eeeeeeEEEEeccCCCchh------------hhhhhhhhhhhhccCCeEEEEEeccccccccc
Confidence 0122357999998855443 2445567788899999999866433 2
Q ss_pred -chHHHHHHHHHHH
Q 038592 411 -RSFYDMLIQEFRD 423 (478)
Q Consensus 411 -~~~~~~v~~~l~~ 423 (478)
...+..-++.|++
T Consensus 272 ae~vFa~Ev~klqe 285 (317)
T KOG1596|consen 272 AEAVFAAEVKKLQE 285 (317)
T ss_pred HHHHHHHHHHHHHH
Confidence 2334444555554
No 234
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=94.63 E-value=0.2 Score=47.24 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=66.6
Q ss_pred CCeEEEEeCchhHHHHHHHhh-CCCE---------EEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhh
Q 038592 263 RPKALCVGVGGGALVSFLRTQ-LDFE---------VVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQI 331 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~-~~~~---------V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~ 331 (478)
...++.-=||+|+++...... .... +.++|+|+.+++.|++.+... ....+.+...|+.++-
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------- 101 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------- 101 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-------
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-------
Confidence 357999999999988665443 2434 999999999999999876321 2356889999998873
Q ss_pred cCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEE
Q 038592 332 VGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIF 402 (478)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gil 402 (478)
.....+|+|+.|.-=+...+ .......|+ ..|++.+++.|++..++
T Consensus 102 -----------------------~~~~~~d~IvtnPPyG~r~~-~~~~~~~ly-~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 102 -----------------------LPDGSVDAIVTNPPYGRRLG-SKKDLEKLY-RQFLRELKRVLKPRAVF 147 (179)
T ss_dssp -----------------------GTTSBSCEEEEE--STTSHC-HHHHHHHHH-HHHHHHHHCHSTTCEEE
T ss_pred -----------------------cccCCCCEEEECcchhhhcc-CHHHHHHHH-HHHHHHHHHHCCCCEEE
Confidence 03568999999863322110 000001222 56788888889883333
No 235
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.60 E-value=0.12 Score=54.44 Aligned_cols=101 Identities=20% Similarity=0.228 Sum_probs=71.9
Q ss_pred CCeEEEEeCchhHHH-HHHHhhCC-CEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGGGALV-SFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVGDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~-~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
+.++|..=.|.|.=+ ++..+..+ .+|++-|+||+.++..++...+. .++++++...||..++..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------------ 117 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------------ 117 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------------
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------------
Confidence 457777767778744 55555344 69999999999999999886443 234899999999999853
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
...+||+|=+|.|.+ | ..||..+-+.++.||++.+-.
T Consensus 118 -----------------~~~~fD~IDlDPfGS--------p------~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 118 -----------------RQERFDVIDLDPFGS--------P------APFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp -----------------STT-EEEEEE--SS----------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred -----------------ccccCCEEEeCCCCC--------c------cHhHHHHHHHhhcCCEEEEec
Confidence 467899999987653 2 469999999999999998754
No 236
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.53 E-value=0.092 Score=46.58 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=41.7
Q ss_pred EEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEc
Q 038592 266 ALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVG 318 (478)
Q Consensus 266 VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~ 318 (478)
++.||+|.|..+.++.+.. ..+|.++|.+|.+.+.+++.+....-++++++..
T Consensus 2 vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~ 55 (143)
T TIGR01444 2 VIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNA 55 (143)
T ss_pred EEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7899999999998888775 4699999999999999998875432234665553
No 237
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.43 E-value=0.19 Score=48.67 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=91.0
Q ss_pred EEEEeCchhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 266 ALCVGVGGGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 266 VLvIGlGgG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
|+.||+-=|.||.+|.+.-. .++.++|+.+.=++.|++.... ...++++++.+||++-+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~----------------- 63 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP----------------- 63 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-----------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-----------------
Confidence 57899999999999998753 5899999999999999976532 1246899999999998742
Q ss_pred ccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHH
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRD 423 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~ 423 (478)
.+..|.|++- ||- .-+-.++|+.....++..--|+++=...... +-+.|.+
T Consensus 64 -------------~e~~d~ivIA--------GMG----G~lI~~ILe~~~~~~~~~~~lILqP~~~~~~----LR~~L~~ 114 (205)
T PF04816_consen 64 -------------GEDVDTIVIA--------GMG----GELIIEILEAGPEKLSSAKRLILQPNTHAYE----LRRWLYE 114 (205)
T ss_dssp -------------GG---EEEEE--------EE-----HHHHHHHHHHTGGGGTT--EEEEEESS-HHH----HHHHHHH
T ss_pred -------------CCCCCEEEEe--------cCC----HHHHHHHHHhhHHHhccCCeEEEeCCCChHH----HHHHHHH
Confidence 2336888882 331 1255788888888887666777654433222 2223333
Q ss_pred h-cCccEEEeecc--cceEEEEEEcCCCCC-CcchhhhhhhHHHHH
Q 038592 424 V-FQELYEIDVGN--EENFVLIATGLSIVS-SGSDCENAFGKKLRL 465 (478)
Q Consensus 424 v-F~~v~~~~v~~--~~N~Vl~a~~~~~~~-~~~~~~~~~~~~l~~ 465 (478)
. |.-+-+.-+.+ -.-.|+.|.+..... ..++..-.|++.|.+
T Consensus 115 ~gf~I~~E~lv~e~~~~YeIi~~~~~~~~~~~~~~~~~~~G~~l~~ 160 (205)
T PF04816_consen 115 NGFEIIDEDLVEENGRFYEIIVAERGEEKPESLSEAELEFGPVLLE 160 (205)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEEEESSS------HHHHHH-HHHHH
T ss_pred CCCEEEEeEEEeECCEEEEEEEEEeCCCCCCCCChHHHHhCHHHHh
Confidence 3 43332222322 234677777666544 345566677776654
No 238
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.23 E-value=0.37 Score=50.15 Aligned_cols=95 Identities=22% Similarity=0.279 Sum_probs=63.3
Q ss_pred CCCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 262 FRPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 262 ~~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
...+|+|+|.|| |.++--+.+..+.+|++++.+++-.+.|++. |. + .++..-.-++++..
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l-GA--d---~~i~~~~~~~~~~~------------- 226 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL-GA--D---HVINSSDSDALEAV------------- 226 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh-CC--c---EEEEcCCchhhHHh-------------
Confidence 357999999993 4466666666679999999999999999885 32 1 22321112222221
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
...+|+||.-+- ..-+....+.|+++|.+++.=..
T Consensus 227 ----------------~~~~d~ii~tv~-----------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 227 ----------------KEIADAIIDTVG-----------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ----------------HhhCcEEEECCC-----------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 123999998321 33567788899999999874433
No 239
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=94.18 E-value=0.21 Score=52.93 Aligned_cols=141 Identities=15% Similarity=0.139 Sum_probs=102.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..|||.+..--|+=+.+++.++ ...|.+-|.+..-+..-+..+....-.+.-+...|+.+|-++.
T Consensus 242 gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~------------- 308 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKE------------- 308 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccc-------------
Confidence 5699999998887777888876 3699999999888877665543222346778899999874321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC--------------ChHHHHHHHHHccCcCcEEEEEe
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF--------------VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f--------------~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||=|++|+..+-. |+-.-|..+ ++.+.|..+-..+++||+||.-+
T Consensus 309 ---------------~~~~fDRVLLDAPCSGt--gvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST 371 (460)
T KOG1122|consen 309 ---------------FPGSFDRVLLDAPCSGT--GVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST 371 (460)
T ss_pred ---------------cCcccceeeecCCCCCC--cccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence 22389999999966531 232223222 56788899999999999999988
Q ss_pred CCCCchHHHHHHHHHHHhcCccEEEee
Q 038592 407 IPPNRSFYDMLIQEFRDVFQELYEIDV 433 (478)
Q Consensus 407 ~~~~~~~~~~v~~~l~~vF~~v~~~~v 433 (478)
.+-..+--+.+++..-+-||++...+.
T Consensus 372 CSI~~~ENE~vV~yaL~K~p~~kL~p~ 398 (460)
T KOG1122|consen 372 CSITVEENEAVVDYALKKRPEVKLVPT 398 (460)
T ss_pred eecchhhhHHHHHHHHHhCCceEeccc
Confidence 776666567778888888988766554
No 240
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.16 E-value=0.16 Score=49.61 Aligned_cols=61 Identities=23% Similarity=0.359 Sum_probs=42.0
Q ss_pred CeEEEE--eCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHH
Q 038592 264 PKALCV--GVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKL 327 (478)
Q Consensus 264 ~~VLvI--GlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~ 327 (478)
..|++. |+|||+ ..|..+ ...|.++||||.-+..|+.....- -..|+++++||-++....+
T Consensus 96 ~~iidaf~g~gGnt-iqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 96 EVIVDAFCGVGGNT-IQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKL 159 (263)
T ss_pred chhhhhhhcCCchH-HHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHH
Confidence 344443 444444 334333 468999999999999999775321 1239999999999987664
No 241
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.88 E-value=0.5 Score=45.73 Aligned_cols=125 Identities=21% Similarity=0.258 Sum_probs=83.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHH----HHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLR----VARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~----vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
..+||=+|.-+|+.++.+.... ...|.+||.+|.+.+ +|++ .+++--+.+||..=- +.+.
T Consensus 77 g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~------R~Ni~PIL~DA~~P~-~Y~~-------- 141 (231)
T COG1889 77 GSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK------RPNIIPILEDARKPE-KYRH-------- 141 (231)
T ss_pred CCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh------CCCceeeecccCCcH-Hhhh--------
Confidence 4699999999999999998876 479999999997654 5554 366777888887421 1110
Q ss_pred CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-------C
Q 038592 338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-------N 410 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-------~ 410 (478)
--+..|+|+.|+-.++. ..=+..++...|+++|-+++-+-.| .
T Consensus 142 ------------------~Ve~VDviy~DVAQp~Q------------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 142 ------------------LVEKVDVIYQDVAQPNQ------------AEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred ------------------hcccccEEEEecCCchH------------HHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 23459999999855432 3668889999999999444333222 2
Q ss_pred chHHHHHHHHHHHh-cCccEEEe
Q 038592 411 RSFYDMLIQEFRDV-FQELYEID 432 (478)
Q Consensus 411 ~~~~~~v~~~l~~v-F~~v~~~~ 432 (478)
.+.++.-+..|.+- |.-+-.+.
T Consensus 192 ~~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 192 EEVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred HHHHHHHHHHHHhcCceeeEEec
Confidence 34455555666655 44333333
No 242
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.73 E-value=0.57 Score=51.36 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=37.1
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
+.+|+|+|+| .|..+....+.++.+|.++|.+++.++.|++ +|.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-lGA 209 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-MGA 209 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC
Confidence 7899999999 4666666667778899999999999999988 563
No 243
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.71 E-value=0.24 Score=52.14 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=60.2
Q ss_pred CCeEEEEeC-c--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGV-G--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGl-G--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
.++|+|||+ | ||++++.|.+..+.+|.++|.+ |+. ..|..+.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~---------------d~~----~~~~~~~---------------- 48 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA---------------DPG----SLDPATL---------------- 48 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC---------------ccc----cCCHHHH----------------
Confidence 479999999 9 8999999997667799999874 100 0011111
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHc---cCcCcEEEEEeCCCCchHHHH
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLI---LSDFGIFVMNVIPPNRSFYDM 416 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~---L~~~Gilv~N~~~~~~~~~~~ 416 (478)
-...|+||+-+ |.. ...++++.+... |++ |.+++.+.+-.....+.
T Consensus 49 -----------------v~~aDlVilav------------Pv~-~~~~~l~~l~~~~~~l~~-~~iVtDVgSvK~~i~~~ 97 (370)
T PRK08818 49 -----------------LQRADVLIFSA------------PIR-HTAALIEEYVALAGGRAA-GQLWLDVTSIKQAPVAA 97 (370)
T ss_pred -----------------hcCCCEEEEeC------------CHH-HHHHHHHHHhhhhcCCCC-CeEEEECCCCcHHHHHH
Confidence 13479999932 333 457888888876 565 77888998876555444
Q ss_pred H
Q 038592 417 L 417 (478)
Q Consensus 417 v 417 (478)
+
T Consensus 98 ~ 98 (370)
T PRK08818 98 M 98 (370)
T ss_pred H
Confidence 3
No 244
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.52 E-value=0.8 Score=47.31 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=72.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-----CCEEEEEECChHHHHHHHHhcCCCCCCCeEE--EEchHHHHHHHHHhhhcCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-----DFEVVGVEMDEVVLRVARQYFGLEDGEFLQV--SVGDAIEFLEKLARQIVGKN 335 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v--~v~Dg~~~l~~~~~~~~~~~ 335 (478)
...++.+|+|.|.=.+.|.+.+ ....+.|||+.+.++.|.+.+....-|.+++ +++|-.+-+.-+...
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~----- 151 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP----- 151 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc-----
Confidence 3478889999998665555543 3689999999999999988876333466777 566555443321100
Q ss_pred CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH-ccCcCcEEEEEeC
Q 038592 336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL-ILSDFGIFVMNVI 407 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~-~L~~~Gilv~N~~ 407 (478)
.......+|+. -+...+.+ .|+ -...||+.+++ .|+|+|.|++-+-
T Consensus 152 -------------------~~~~~~r~~~f---lGSsiGNf-~~~---ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 152 -------------------ENRSRPTTILW---LGSSIGNF-SRP---EAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred -------------------cccCCccEEEE---eCccccCC-CHH---HHHHHHHHHHHhhCCCCCEEEEecC
Confidence 01223455555 22223222 122 23689999999 9999999998663
No 245
>PRK11524 putative methyltransferase; Provisional
Probab=93.49 E-value=0.26 Score=49.81 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=45.3
Q ss_pred CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-----C-
Q 038592 311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-----V- 384 (478)
Q Consensus 311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-----~- 384 (478)
..-+++.+|++++++.+ .+.+||+|++|.-=.... ......... .
T Consensus 7 ~~~~i~~gD~~~~l~~l----------------------------~~~siDlIitDPPY~~~~-~~~~~~~~~~~~~~~~ 57 (284)
T PRK11524 7 EAKTIIHGDALTELKKI----------------------------PSESVDLIFADPPYNIGK-NFDGLIEAWKEDLFID 57 (284)
T ss_pred CCCEEEeccHHHHHHhc----------------------------ccCcccEEEECCCccccc-ccccccccccHHHHHH
Confidence 44589999999998763 466899999984210000 000011111 1
Q ss_pred -hHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 385 -RKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 385 -~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
-.+++..++++|+++|.++++....
T Consensus 58 ~l~~~l~~~~rvLK~~G~i~i~~~~~ 83 (284)
T PRK11524 58 WLYEWIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEcCch
Confidence 1578899999999999999875443
No 246
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.43 E-value=0.21 Score=50.23 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=32.2
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
++|.|||+| |+.++..|.+. +.+|+++|.|++.++.+.++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~~~~~~~~~~ 43 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQEQLESAQQE 43 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHHH
Confidence 479999999 56666666543 67999999999999988765
No 247
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.30 E-value=0.89 Score=49.89 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=35.5
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
+.+|+|+|+|. |..+..+.+.++..|+++|.+++.++.+++ +|.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lGa 208 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MGA 208 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC
Confidence 67999999994 555555666678889999999999999987 553
No 248
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.30 E-value=0.32 Score=45.15 Aligned_cols=44 Identities=23% Similarity=0.154 Sum_probs=34.1
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
|.+|+++|.| .|.-+..+...++.++++.|..++.++..+..+.
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~ 64 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGA 64 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTT
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccC
Confidence 7899999999 4555556666689999999999999988777654
No 249
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.29 E-value=0.85 Score=37.65 Aligned_cols=102 Identities=25% Similarity=0.254 Sum_probs=67.6
Q ss_pred EEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcCCCCCCC-eEEEEchHHHH-HHHHHhhhcCCCCCCCCc
Q 038592 266 ALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFGLEDGEF-LQVSVGDAIEF-LEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 266 VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg~~~d~r-l~v~v~Dg~~~-l~~~~~~~~~~~~~~~~~ 341 (478)
++.+|+|.|... ++..... ..++++|+++.+++.++..... .... +.+..+|.... +.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------- 113 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLP---------------- 113 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCC----------------
Confidence 999999999876 4444332 4888899999999996654332 2111 67777777652 10
Q ss_pred ccccCCCccCCCCCCC-CceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVD-NKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~-~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
... ..||++ .-...... ......+..+.+.|+++|.+++.....
T Consensus 114 -------------~~~~~~~d~~-~~~~~~~~----------~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 114 -------------FEDSASFDLV-ISLLVLHL----------LPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred -------------CCCCCceeEE-eeeeehhc----------CCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 122 479999 42111100 014789999999999999998876654
No 250
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.95 E-value=3.5 Score=39.64 Aligned_cols=144 Identities=17% Similarity=0.249 Sum_probs=90.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEE----EEchHHHHHHHHHhhhcCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQV----SVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v----~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
..+||.+|..-|++.....+.. +..|.+|||- ++.-+ +...+ .+.|-..+.+=. +.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll---------h~~p~--~Ga~~i~~~dvtdp~~~~ki~-e~------ 131 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL---------HIEPP--EGATIIQGNDVTDPETYRKIF-EA------ 131 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeee---------eccCC--CCcccccccccCCHHHHHHHH-Hh------
Confidence 4689999999999998877764 5799999983 23211 22233 334555543221 10
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVMNVIPPNRS 412 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~N~~~~~~~ 412 (478)
-++.+.|+|+.|..... + |+.. -.+. +-.+.|.-....+.|+|.|++-+|.-+.+
T Consensus 132 ------------------lp~r~VdvVlSDMapna-T-Gvr~-~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 132 ------------------LPNRPVDVVLSDMAPNA-T-GVRI-RDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred ------------------CCCCcccEEEeccCCCC-c-Ccch-hhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 15678999999975432 1 3321 1111 11224444456778999999999876443
Q ss_pred HHHHHHHHHHHhcCccEEEee----cccceEEEEEEcCC
Q 038592 413 FYDMLIQEFRDVFQELYEIDV----GNEENFVLIATGLS 447 (478)
Q Consensus 413 ~~~~v~~~l~~vF~~v~~~~v----~~~~N~Vl~a~~~~ 447 (478)
..+.++|+++|..|..++. ++..-..++|++-.
T Consensus 191 --~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k 227 (232)
T KOG4589|consen 191 --ALLQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFK 227 (232)
T ss_pred --HHHHHHHHHHhhhcEeeCCccccccccceeeeeeecc
Confidence 3467899999999987764 34445667776543
No 251
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.82 E-value=0.67 Score=48.51 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=77.6
Q ss_pred CCeEEEEeCchhHHH-HHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGGALV-SFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~-~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+.+||.-=.|+|.=+ ++..+....+|+.=||+|.-++++++...+...+...++..|+-.++.+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~--------------- 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE--------------- 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh---------------
Confidence 568888777888744 3333333359999999999999999998776445566666999999976
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
....||+|=+|.|.+ | ..|++++.+..+.+|++.+-.
T Consensus 118 --------------~~~~fd~IDiDPFGS--------P------aPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 118 --------------LHRAFDVIDIDPFGS--------P------APFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred --------------cCCCccEEecCCCCC--------C------chHHHHHHHHhhcCCEEEEEe
Confidence 357899999987754 2 348999999999999998754
No 252
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.78 E-value=2 Score=40.67 Aligned_cols=38 Identities=26% Similarity=0.412 Sum_probs=24.9
Q ss_pred eEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 265 KALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
+|.|+|+|-=+ ++..+.+ .+.+|.+||+|++.++.-.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEEE--STTHHHHHHHHHH-TTSEEEEE-S-HHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHh-CCCEEEEEeCChHHHHHHhh
Confidence 79999999433 4444443 37899999999999988764
No 253
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=92.66 E-value=0.13 Score=50.62 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=73.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeE--EEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQ--VSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~--v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
-+.+++||+|-|.+.+.|+..---+++.+|.+-.|++-|++- +||.+. -.++|-- ++.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~----qdp~i~~~~~v~DEE-~Ld--------------- 132 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA----QDPSIETSYFVGDEE-FLD--------------- 132 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc----CCCceEEEEEecchh-ccc---------------
Confidence 468999999999999888765324899999999999999865 345443 3455532 321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
...+++|+||.-+.-.+.. --+..+..|+..|+|+|+|+--+..-
T Consensus 133 --------------f~ens~DLiisSlslHW~N----------dLPg~m~~ck~~lKPDg~Fiasmlgg 177 (325)
T KOG2940|consen 133 --------------FKENSVDLIISSLSLHWTN----------DLPGSMIQCKLALKPDGLFIASMLGG 177 (325)
T ss_pred --------------ccccchhhhhhhhhhhhhc----------cCchHHHHHHHhcCCCccchhHHhcc
Confidence 2567899999854322211 11457788999999999999766554
No 254
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.65 E-value=0.84 Score=46.33 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=32.1
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
++|.+||+| |++++..|.+. +.+|+++|.+++.++.+++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-GLQVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHH
Confidence 589999999 66677666543 67999999999998887764
No 255
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=92.46 E-value=0.34 Score=46.97 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=74.2
Q ss_pred chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh---C--CCEEEEEECChHHH-HHHHHhcCCCC
Q 038592 236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ---L--DFEVVGVEMDEVVL-RVARQYFGLED 309 (478)
Q Consensus 236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~---~--~~~V~~VEiDp~Vl-~vA~~~Fg~~~ 309 (478)
...|-+-|++-..++-.. .|..|+.+|.-.|+.+.|.+.. + ..+|.+||||..-. ..|.+.-.+
T Consensus 14 i~q~P~Dm~~~qeli~~~--------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-- 83 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWEL--------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-- 83 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH----------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----
T ss_pred hhcCHHHHHHHHHHHHHh--------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc--
Confidence 344555666655554321 3788999999866655555432 3 37999999975433 333333222
Q ss_pred CCCeEEEEchHHHH--HHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHH
Q 038592 310 GEFLQVSVGDAIEF--LEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKD 387 (478)
Q Consensus 310 d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~e 387 (478)
.+|++++.||..+- +.+... -.......+||.|....-. -...
T Consensus 84 ~~rI~~i~Gds~d~~~~~~v~~------------------------~~~~~~~vlVilDs~H~~~-----------hvl~ 128 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVDQVRE------------------------LASPPHPVLVILDSSHTHE-----------HVLA 128 (206)
T ss_dssp -TTEEEEES-SSSTHHHHTSGS------------------------S----SSEEEEESS----S-----------SHHH
T ss_pred cCceEEEECCCCCHHHHHHHHH------------------------hhccCCceEEEECCCccHH-----------HHHH
Confidence 48999999998753 221000 0123456788887653221 2345
Q ss_pred HHHHHHHccCcCcEEEE-EeCCC--------Cch-----HHHHHHHHHHHhcCccEEEee
Q 038592 388 VLLAARLILSDFGIFVM-NVIPP--------NRS-----FYDMLIQEFRDVFQELYEIDV 433 (478)
Q Consensus 388 fl~~~~~~L~~~Gilv~-N~~~~--------~~~-----~~~~v~~~l~~vF~~v~~~~v 433 (478)
-|+....++++|+.+|+ .+... ++. -....+..+.+.++. |.++.
T Consensus 129 eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~-f~iD~ 187 (206)
T PF04989_consen 129 ELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPD-FEIDT 187 (206)
T ss_dssp HHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTT-EEEET
T ss_pred HHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCC-cEecc
Confidence 66779999999999986 22100 111 123445556666777 77764
No 256
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.41 E-value=0.85 Score=45.75 Aligned_cols=39 Identities=36% Similarity=0.361 Sum_probs=32.6
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
+|.|||+| ||+++..|.+. +.+|.+++.++..++.+.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~ 42 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER 42 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC
Confidence 68999999 67888888765 67999999999988887653
No 257
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.40 E-value=1.2 Score=45.27 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=31.4
Q ss_pred CeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~ 303 (478)
.+|+|||+| |++++..|.+.. ..+|.+++.+++-.+.+++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~ 49 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE 49 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh
Confidence 589999999 456777776542 3589999999998888765
No 258
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=92.40 E-value=0.96 Score=51.60 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=54.3
Q ss_pred cHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh-----------------------------------
Q 038592 239 YLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ----------------------------------- 283 (478)
Q Consensus 239 Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~----------------------------------- 283 (478)
--+.+++++.....-. .....++.-+||+|+++......
T Consensus 173 l~etlAaa~l~~a~w~------~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~ 246 (702)
T PRK11783 173 LKENLAAAILLRSGWP------QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQE 246 (702)
T ss_pred CcHHHHHHHHHHcCCC------CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHH
Confidence 3456666665543210 11357888999999987554331
Q ss_pred --------CCCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHH
Q 038592 284 --------LDFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEF 323 (478)
Q Consensus 284 --------~~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~ 323 (478)
...+|+++|+|+.+++.|++..... -..++++..+|..++
T Consensus 247 ~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~ 295 (702)
T PRK11783 247 RARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADL 295 (702)
T ss_pred HHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhc
Confidence 0137999999999999999876432 235789999999876
No 259
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=92.38 E-value=0.98 Score=44.15 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=76.2
Q ss_pred CCCeEEEEeCchhHHHHHHHhhC--C-CEEEEEECChHHHHHHHHhcCCCCCCCe---------------EEEEchHHHH
Q 038592 262 FRPKALCVGVGGGALVSFLRTQL--D-FEVVGVEMDEVVLRVARQYFGLEDGEFL---------------QVSVGDAIEF 323 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~--~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl---------------~v~v~Dg~~~ 323 (478)
.|..+-.=.||+|.|...|.-+. . ..|.+-|||+.++++|++.+++...+.+ +..+.|+.+-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 36788888999998776554433 2 5999999999999999999876421000 1111222221
Q ss_pred HHHHHhhhcCCCCCCCCccccc--CCCccCCC----CCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccC
Q 038592 324 LEKLARQIVGKNPDSFGACSLK--DGNFLDNS----DRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILS 397 (478)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~ 397 (478)
...+...-... .+..+.+ .-|..... -......|+||.|+.-++.+. +..+-..=-...+|..++..|.
T Consensus 131 A~RL~~~l~~~----g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~-W~g~~~~~p~~~ml~~l~~vLp 205 (246)
T PF11599_consen 131 ADRLRERLAAE----GGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTS-WQGEGSGGPVAQMLNSLAPVLP 205 (246)
T ss_dssp HHHHHHHHHHT----TSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSS-TTS---HHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHhc----CCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccc-ccCCCCCCcHHHHHHHHHhhCC
Confidence 11111100000 0000000 00000000 012344699999997766442 2221111124789999999997
Q ss_pred cCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeeccc
Q 038592 398 DFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNE 436 (478)
Q Consensus 398 ~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~~~ 436 (478)
+++++++ ..+..... ..-|..+-.++++.-
T Consensus 206 ~~sVV~v--~~k~~Ki~-------~~~~r~~~rlKvGkR 235 (246)
T PF11599_consen 206 ERSVVAV--SDKGRKIP-------HDRFRRLERLKVGKR 235 (246)
T ss_dssp TT-EEEE--EESSSS----------TTS--SEEEEETTE
T ss_pred CCcEEEE--ecCCcccc-------cchhHHHHHHhccce
Confidence 7888877 33333321 256777777777653
No 260
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.32 E-value=2.5 Score=38.85 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=75.0
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+|-+||+| |..++.-|.+. +.+|.+.|.+++-.+...+. + -....+..+.+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~~~~~~~~~~-g-------~~~~~s~~e~~~~--------------- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSPEKAEALAEA-G-------AEVADSPAEAAEQ--------------- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-TTEEEEEESSHHHHHHHHHT-T-------EEEESSHHHHHHH---------------
T ss_pred CEEEEEchHHHHHHHHHHHHhc-CCeEEeeccchhhhhhhHHh-h-------hhhhhhhhhHhhc---------------
Confidence 489999999 33455555433 68999999999888776654 2 2344566666543
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHH--HHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLA--ARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~--~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
-|+|++-+.+.+ ...+.+.. +...|++ |.+++++.+.+++..+.+.+
T Consensus 58 ------------------~dvvi~~v~~~~------------~v~~v~~~~~i~~~l~~-g~iiid~sT~~p~~~~~~~~ 106 (163)
T PF03446_consen 58 ------------------ADVVILCVPDDD------------AVEAVLFGENILAGLRP-GKIIIDMSTISPETSRELAE 106 (163)
T ss_dssp ------------------BSEEEE-SSSHH------------HHHHHHHCTTHGGGS-T-TEEEEE-SS--HHHHHHHHH
T ss_pred ------------------ccceEeecccch------------hhhhhhhhhHHhhcccc-ceEEEecCCcchhhhhhhhh
Confidence 499998543211 23555555 6666765 66667888888887777777
Q ss_pred HHHHhcCccEEEeec------ccceEEEEEE
Q 038592 420 EFRDVFQELYEIDVG------NEENFVLIAT 444 (478)
Q Consensus 420 ~l~~vF~~v~~~~v~------~~~N~Vl~a~ 444 (478)
.+.+.--+....++. +.....++++
T Consensus 107 ~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~g 137 (163)
T PF03446_consen 107 RLAAKGVRYVDAPVSGGPPGAEEGTLTIMVG 137 (163)
T ss_dssp HHHHTTEEEEEEEEESHHHHHHHTTEEEEEE
T ss_pred hhhhccceeeeeeeecccccccccceEEEcc
Confidence 777654444445542 2345556665
No 261
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=92.24 E-value=0.63 Score=47.88 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=53.4
Q ss_pred CeEEEEeCchhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
...+..=+|+|+-+..+.+. .+.+|.++|.||++++.|++.+.- .++|+.++.++-.++-+.+...
T Consensus 22 g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~-~~~r~~~~~~~F~~l~~~l~~~------------ 88 (310)
T PF01795_consen 22 GIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK-FDDRFIFIHGNFSNLDEYLKEL------------ 88 (310)
T ss_dssp -EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC-CCTTEEEEES-GGGHHHHHHHT------------
T ss_pred ceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh-ccceEEEEeccHHHHHHHHHHc------------
Confidence 45666667777777666665 469999999999999999887652 2689999998877665443221
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLD 368 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~ 368 (478)
..-.++|-|++|+-
T Consensus 89 ------------~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 89 ------------NGINKVDGILFDLG 102 (310)
T ss_dssp ------------TTTS-EEEEEEE-S
T ss_pred ------------cCCCccCEEEEccc
Confidence 02457999999984
No 262
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.20 E-value=1.1 Score=44.87 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=65.7
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-----CCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-----EDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-----~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
.+|.|||+| |+.++..+... +.+|+++|++++.++.+++...- .+...+ -..+....+..+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~--~~~~~~~~~~~l--------- 71 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKM--TEADKEAALARI--------- 71 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHhCe---------
Confidence 479999999 77787777655 67999999999999766543210 000000 000111111000
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRS 412 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~ 412 (478)
+.+. + ...-...|+||.-+ |+..-...+++..+.+.++++-+++.|+.+....
T Consensus 72 ~~~~-------~-----~~~~~~aDlVi~av-----------~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 72 TGTT-------D-----LDDLKDADLVIEAA-----------TENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred EEeC-------C-----HHHhccCCeeeecc-----------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 0000 0 00113368888832 2222244789999999999999988888776443
No 263
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.16 E-value=1.7 Score=45.79 Aligned_cols=44 Identities=20% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
+.+|+|+|.| .|..+......++.+|+++|.+++-++.+...++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g 211 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG 211 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC
Confidence 6789999998 3444444445567899999999988877766655
No 264
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.16 E-value=1.2 Score=44.84 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=31.2
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
.+|.|||+| |++++..+... +.+|+.+|.+++.++.+++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~ 45 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKER 45 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH
Confidence 589999999 45566655543 67999999999988887654
No 265
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=92.04 E-value=0.49 Score=45.81 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=67.2
Q ss_pred eEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHh---cCCCC-CCCeEEEEchH-HHHHHHHHhhhcCCCCCC
Q 038592 265 KALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQY---FGLED-GEFLQVSVGDA-IEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 265 ~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~---Fg~~~-d~rl~v~v~Dg-~~~l~~~~~~~~~~~~~~ 338 (478)
+||.||.|+|--+.++..++ .....--|+|+....--+.| .++++ -+-+.+=+.+. -.+..
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~------------- 94 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWEL------------- 94 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcccc-------------
Confidence 69999999999888888876 68999999999986433333 34331 12223222222 11100
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
........||+|++ -+-- .++ |.. ....+++.+.++|++||+|++.=
T Consensus 95 -------------~~~~~~~~~D~i~~--~N~l---HI~--p~~-~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 95 -------------PAPLSPESFDAIFC--INML---HIS--PWS-AVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred -------------ccccCCCCcceeee--hhHH---Hhc--CHH-HHHHHHHHHHHhCCCCCEEEEeC
Confidence 00013567999997 1111 111 222 45889999999999999999754
No 266
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.88 E-value=1.8 Score=43.18 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=65.3
Q ss_pred CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592 285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM 364 (478)
Q Consensus 285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi 364 (478)
+-+....|+.|+-.+.-++.|. .+.+++||..||.+-+....- +..+=-+|+
T Consensus 79 qDrl~l~ELHp~d~~~L~~~~~--~~~~v~v~~~DG~~~l~allP--------------------------P~~rRglVL 130 (245)
T PF04378_consen 79 QDRLVLFELHPQDFEALKKNFR--RDRRVRVHHRDGYEGLKALLP--------------------------PPERRGLVL 130 (245)
T ss_dssp TSEEEEE--SHHHHHHHTTS----TTS-EEEE-S-HHHHHHHH-S---------------------------TTS-EEEE
T ss_pred cceEEEEecCchHHHHHHHHhc--cCCccEEEeCchhhhhhhhCC--------------------------CCCCCeEEE
Confidence 4699999999999998888876 468999999999999887542 455667899
Q ss_pred EeCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccC--cCcEEEEEeCCCCchHHHHHHHHHHHh-cCccE
Q 038592 365 VDLDSGDARNGTSAPPVEFVR--KDVLLAARLILS--DFGIFVMNVIPPNRSFYDMLIQEFRDV-FQELY 429 (478)
Q Consensus 365 vDv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~--~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~ 429 (478)
+|- |-+.-+ ......+.+.++ +.|+++++..--+....+.+.+.|++. .+.+.
T Consensus 131 IDP------------pYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~~l 188 (245)
T PF04378_consen 131 IDP------------PYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKKVL 188 (245)
T ss_dssp E-----------------STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE-E
T ss_pred ECC------------CCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCCeE
Confidence 973 322111 334455555554 589999887666666677788888866 44443
No 267
>PRK13699 putative methylase; Provisional
Probab=91.67 E-value=0.63 Score=45.65 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=42.7
Q ss_pred eEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCC---CCCCCCCCCCCC--ChHH
Q 038592 313 LQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGD---ARNGTSAPPVEF--VRKD 387 (478)
Q Consensus 313 l~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d---~~~g~s~Pp~~f--~~~e 387 (478)
.+++.+|+++.++++ +++..|+||.|--=.. ...+-.--...+ ...+
T Consensus 2 ~~l~~gD~le~l~~l----------------------------pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~ 53 (227)
T PRK13699 2 SRFILGNCIDVMARF----------------------------PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQP 53 (227)
T ss_pred CeEEechHHHHHHhC----------------------------CccccceEEeCCCcccccccCCCcccccccHHHHHHH
Confidence 378999999999874 6788999999841100 000000000110 1246
Q ss_pred HHHHHHHccCcCcEEEEEeC
Q 038592 388 VLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 388 fl~~~~~~L~~~Gilv~N~~ 407 (478)
++..+++.|+|||.+++...
T Consensus 54 ~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 54 ACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred HHHHHHHHcCCCCEEEEEec
Confidence 78999999999999987544
No 268
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.63 E-value=0.77 Score=44.89 Aligned_cols=162 Identities=17% Similarity=0.148 Sum_probs=104.0
Q ss_pred CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.++..||+=-+.||.+|.+.- ...++++|+.+--++.|.++|.-. ..+++++..+||+.-++
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~---------------- 81 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLE---------------- 81 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccC----------------
Confidence 359999999999999988764 569999999999999999999654 35899999999987663
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
.+...|+|++- ||- ..+=.++|+.-++.|+.-=-++++=... ....+ +.|
T Consensus 82 --------------~~d~~d~ivIA--------GMG----G~lI~~ILee~~~~l~~~~rlILQPn~~-~~~LR---~~L 131 (226)
T COG2384 82 --------------LEDEIDVIVIA--------GMG----GTLIREILEEGKEKLKGVERLILQPNIH-TYELR---EWL 131 (226)
T ss_pred --------------ccCCcCEEEEe--------CCc----HHHHHHHHHHhhhhhcCcceEEECCCCC-HHHHH---HHH
Confidence 35579999992 332 1245789999999998433444322222 11111 111
Q ss_pred HH-hcCccEEEeec--ccceEEEEEEcCCCCCCc-chhhhhhhHHHHHHhcccc
Q 038592 422 RD-VFQELYEIDVG--NEENFVLIATGLSIVSSG-SDCENAFGKKLRLLISGEY 471 (478)
Q Consensus 422 ~~-vF~~v~~~~v~--~~~N~Vl~a~~~~~~~~~-~~~~~~~~~~l~~~i~~~~ 471 (478)
.. -|.-..+.=+. +..-.|++|.+++-.... ++..=.|++.|.++-+..|
T Consensus 132 ~~~~~~I~~E~ileE~~kiYEIlv~e~~~~~~~~~~~~~~~~Gp~L~k~k~~~~ 185 (226)
T COG2384 132 SANSYEIKAETILEEDGKIYEILVVEKSSKPALYATEEDLLFGPKLLKEKSALF 185 (226)
T ss_pred HhCCceeeeeeeecccCeEEEEEEEecCCchhhhhcchhhhcCHHHHhcchHHH
Confidence 11 13211111122 234577888776533222 3555667777776544433
No 269
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=91.50 E-value=1.2 Score=44.77 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=37.0
Q ss_pred CCCeEEEEeCchhHHHHHHHhhCC--CEEEEEECChHHHHHHHHhcC
Q 038592 262 FRPKALCVGVGGGALVSFLRTQLD--FEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~~--~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
.|.+||.+|.|.|+..-.+...++ .++++||.++.++++|+.-+.
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence 378999999999986666666553 599999999999999987654
No 270
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=91.23 E-value=1.1 Score=48.55 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=73.0
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
-++|++|+|.--+...+.+-.--.|+.+|+++.+++.+..--+ .+.+-+++...|.....
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~------------------- 109 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLV------------------- 109 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhcc-------------------
Confidence 3899999998877665555434699999999999998876544 55677888888887652
Q ss_pred ccCCCccCCCCCCCCceeEEEE----eCCCCCCCCCCCCCCCCC----ChHHHHHHHHHccCcCcEEEE
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMV----DLDSGDARNGTSAPPVEF----VRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIiv----Dv~s~d~~~g~s~Pp~~f----~~~efl~~~~~~L~~~Gilv~ 404 (478)
.+++.||++|. |..-.+ -... .-...+..+.+.|+++|.++.
T Consensus 110 -----------fedESFdiVIdkGtlDal~~d--------e~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 110 -----------FEDESFDIVIDKGTLDALFED--------EDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred -----------CCCcceeEEEecCccccccCC--------chhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 25677888875 222222 1111 345678899999999998764
No 271
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=91.11 E-value=1.9 Score=41.74 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=37.7
Q ss_pred CeEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHH----------hcCCCCCCCeEEEEchHHH
Q 038592 264 PKALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQ----------YFGLEDGEFLQVSVGDAIE 322 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~----------~Fg~~~d~rl~v~v~Dg~~ 322 (478)
...+.||.|.|-......-..++ +..+||+.|...+.|+. ++|.. ..+++++.+|.++
T Consensus 44 dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~-~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 44 DVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKR-PGKVELIHGDFLD 112 (205)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB----EEEEECS-TTT
T ss_pred CEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcc-cccceeeccCccc
Confidence 46788999999877665555565 59999999999998864 33432 3578888888764
No 272
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.96 E-value=0.94 Score=45.65 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=31.3
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
++|.|||+| |+.++..+... +.+|+++|.+++.++.+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~ 44 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEEILKNAME 44 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHH
Confidence 589999999 56677666554 6799999999999987654
No 273
>PTZ00357 methyltransferase; Provisional
Probab=90.94 E-value=0.62 Score=52.31 Aligned_cols=111 Identities=19% Similarity=0.175 Sum_probs=68.3
Q ss_pred CeEEEEeCchhHHHHHHHhhC-----CCEEEEEECChHHHHHH-HHhcCC--------CCCCCeEEEEchHHHHHHHHHh
Q 038592 264 PKALCVGVGGGALVSFLRTQL-----DFEVVGVEMDEVVLRVA-RQYFGL--------EDGEFLQVSVGDAIEFLEKLAR 329 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-----~~~V~~VEiDp~Vl~vA-~~~Fg~--------~~d~rl~v~v~Dg~~~l~~~~~ 329 (478)
..|+|+|.|=|-|.....+.. .++|.+||-+|.-+... .++-.. ..+++++|+.+|.+.|-.. .
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~p--e 779 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATA--A 779 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccc--c
Confidence 468999999887765554432 36999999995522222 221111 1256899999999999311 0
Q ss_pred hhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCc----CcE
Q 038592 330 QIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSD----FGI 401 (478)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~----~Gi 401 (478)
+..+.. .+..-.++|+|+.-+-.+..-+ =+++|.|.-+.+.|++ +|+
T Consensus 780 -----~~~s~~------------~P~~~gKaDIVVSELLGSFGDN--------ELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 780 -----ENGSLT------------LPADFGLCDLIVSELLGSLGDN--------ELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred -----cccccc------------ccccccccceehHhhhcccccc--------cCCHHHHHHHHHhhhhhcccccc
Confidence 000000 0012247999998775544321 2568899999988876 776
No 274
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.89 E-value=1.7 Score=44.41 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=33.5
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|+| .|.++..+.+..+. +|.+++.+++-++.|++ +|.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-lGa 215 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-MGA 215 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-cCC
Confidence 4689999876 24455556666676 79999999999999988 563
No 275
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.83 E-value=5.5 Score=38.93 Aligned_cols=150 Identities=21% Similarity=0.237 Sum_probs=85.3
Q ss_pred chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchh----HHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCC-CC
Q 038592 236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGG----ALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGL-ED 309 (478)
Q Consensus 236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG----~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~-~~ 309 (478)
..+++.+|.+|. +.+-++++..++| +++.....+ -+.++..|--|++-+..+++.++- ..
T Consensus 29 ~aEfISAlAAG~--------------nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 29 VAEFISALAAGW--------------NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHHHHHHHhccc--------------cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 556666666652 1356777766654 233333333 478999999999988888887752 22
Q ss_pred CCCeEEEEchHH-HHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHH
Q 038592 310 GEFLQVSVGDAI-EFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDV 388 (478)
Q Consensus 310 d~rl~v~v~Dg~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~ef 388 (478)
.+.++++++|.- +.+.. =...|.+++|....+ + ..++
T Consensus 95 ~~~vEfvvg~~~e~~~~~------------------------------~~~iDF~vVDc~~~d-----------~-~~~v 132 (218)
T PF07279_consen 95 SDVVEFVVGEAPEEVMPG------------------------------LKGIDFVVVDCKRED-----------F-AARV 132 (218)
T ss_pred cccceEEecCCHHHHHhh------------------------------ccCCCEEEEeCCchh-----------H-HHHH
Confidence 345689999865 45543 235899999864322 1 1356
Q ss_pred HHHHHHccCcCcEEEE--EeCCCCch--HHHHHHHHHHHhcCccEEEeecccceEEEEEEc
Q 038592 389 LLAARLILSDFGIFVM--NVIPPNRS--FYDMLIQEFRDVFQELYEIDVGNEENFVLIATG 445 (478)
Q Consensus 389 l~~~~~~L~~~Gilv~--N~~~~~~~--~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~~ 445 (478)
|+.++ +++.|.+++ |...+... -+..++ +-+.+.. ...+|++++.-.--+++.
T Consensus 133 l~~~~--~~~~GaVVV~~Na~~r~~~~~~w~~~~-~~~r~Vr-sv~LPIG~GleVt~ig~~ 189 (218)
T PF07279_consen 133 LRAAK--LSPRGAVVVCYNAFSRSTNGFSWRSVL-RGRRVVR-SVFLPIGKGLEVTRIGAS 189 (218)
T ss_pred HHHhc--cCCCceEEEEeccccCCcCCccHHHhc-CCCCcee-EEEeccCCCeEEEEEeec
Confidence 66544 666676554 87775321 122222 1112222 234777765444444443
No 276
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.82 E-value=3.9 Score=43.69 Aligned_cols=130 Identities=8% Similarity=0.076 Sum_probs=67.2
Q ss_pred CeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+|.|||+|--+ ++..|.+. +.+|+++|+|++.++.-+. |. +.+...+--+.+++....+ +.+.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~~v~~l~~--g~-----~~~~e~~l~~~l~~~~~~g---~l~~~-- 70 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQHAVDTINR--GE-----IHIVEPDLDMVVKTAVEGG---YLRAT-- 70 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHHHHHHHHC--CC-----CCcCCCCHHHHHHHHhhcC---ceeee--
Confidence 589999999444 44444443 6899999999999886332 21 2222223333444321110 00000
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
.....-|+||+-+..+....+ .|.--.-.+.++.+...|++|- ++++..+-.....+.+...+
T Consensus 71 -------------~~~~~aDvvii~vptp~~~~~---~~dl~~v~~~~~~i~~~l~~g~-iVI~~STv~pgtt~~~~~~l 133 (415)
T PRK11064 71 -------------TTPEPADAFLIAVPTPFKGDH---EPDLTYVEAAAKSIAPVLKKGD-LVILESTSPVGATEQMAEWL 133 (415)
T ss_pred -------------cccccCCEEEEEcCCCCCCCC---CcChHHHHHHHHHHHHhCCCCC-EEEEeCCCCCCHHHHHHHHH
Confidence 011257999997654321111 1111133556677888887754 45555443334344444444
Q ss_pred HH
Q 038592 422 RD 423 (478)
Q Consensus 422 ~~ 423 (478)
.+
T Consensus 134 ~~ 135 (415)
T PRK11064 134 AE 135 (415)
T ss_pred HH
Confidence 43
No 277
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.76 E-value=2.2 Score=43.93 Aligned_cols=96 Identities=24% Similarity=0.303 Sum_probs=59.7
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |.++..+.+..+. +|.+++.++.-.+.|++ +|. +.-+.....|..+.+.+..
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~-~Ga--~~~i~~~~~~~~~~i~~~~------------ 241 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE-FGA--THTVNSSGTDPVEAIRALT------------ 241 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC--ceEEcCCCcCHHHHHHHHh------------
Confidence 46899998653 4444555555676 59999999999999976 464 2112222234445454421
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+|+ |.- + ..+.++.+.+.|+++|.+++
T Consensus 242 ---------------~~~g~d~vi-d~~-g--------------~~~~~~~~~~~~~~~G~iv~ 274 (358)
T TIGR03451 242 ---------------GGFGADVVI-DAV-G--------------RPETYKQAFYARDLAGTVVL 274 (358)
T ss_pred ---------------CCCCCCEEE-ECC-C--------------CHHHHHHHHHHhccCCEEEE
Confidence 233588776 421 1 12456667788999999875
No 278
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.28 E-value=0.11 Score=51.37 Aligned_cols=75 Identities=31% Similarity=0.447 Sum_probs=44.4
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC---CCCC------CCeEEEEchHHHHHHHHHhhhcC
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG---LEDG------EFLQVSVGDAIEFLEKLARQIVG 333 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg---~~~d------~rl~v~v~Dg~~~l~~~~~~~~~ 333 (478)
..+||..=+|-|.-+..+. .++.+|+++|-+|.+..+-++-+. -..+ .|++++.+|+.+|++.
T Consensus 76 ~~~VLDaTaGLG~Da~vlA-~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~------- 147 (234)
T PF04445_consen 76 RPSVLDATAGLGRDAFVLA-SLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ------- 147 (234)
T ss_dssp ---EEETT-TTSHHHHHHH-HHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC-------
T ss_pred CCEEEECCCcchHHHHHHH-ccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh-------
Confidence 4689997666666554444 357899999999999887653221 1112 4899999999999852
Q ss_pred CCCCCCCcccccCCCccCCCCCCCCceeEEEEeC
Q 038592 334 KNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL 367 (478)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv 367 (478)
+...||+|.+|-
T Consensus 148 ----------------------~~~s~DVVY~DP 159 (234)
T PF04445_consen 148 ----------------------PDNSFDVVYFDP 159 (234)
T ss_dssp ----------------------HSS--SEEEE--
T ss_pred ----------------------cCCCCCEEEECC
Confidence 467899999974
No 279
>PLN02494 adenosylhomocysteinase
Probab=90.15 E-value=6 Score=43.09 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=28.5
Q ss_pred CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
.++|+|+|.|. | .+++.++ .++.+|.++|.||.-...|..
T Consensus 254 GKtVvViGyG~IGr~vA~~ak-a~Ga~VIV~e~dp~r~~eA~~ 295 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMK-AAGARVIVTEIDPICALQALM 295 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCchhhHHHHh
Confidence 57999999994 3 3444443 468899999999976544543
No 280
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.01 E-value=0.42 Score=51.62 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=78.8
Q ss_pred CCCCeEEEEeCchhH-HHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592 261 GFRPKALCVGVGGGA-LVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 261 g~~~~VLvIGlGgG~-L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
..+.+||..=.++|. ..+|..+..+ .+|++-|.|+..++..++.-.+. .+..++.+.+|+.-.+-+.
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~---------- 177 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH---------- 177 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc----------
Confidence 346788887666676 3355555555 49999999999999887765443 3467899999999876541
Q ss_pred CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
......||+|=+|-+.+. ..||..+-+.+++||++.+-.
T Consensus 178 ----------------~~~~~~FDvIDLDPyGs~--------------s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 178 ----------------PMVAKFFDVIDLDPYGSP--------------SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ----------------cccccccceEecCCCCCc--------------cHHHHHHHHHhhcCCEEEEEe
Confidence 124578999999876542 459999999999999998754
No 281
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=89.88 E-value=1.1 Score=43.77 Aligned_cols=70 Identities=23% Similarity=0.305 Sum_probs=51.9
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH-hcCCCCCCCeEEEEchHHH--HHHHHHhhhcCCCCCCC
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ-YFGLEDGEFLQVSVGDAIE--FLEKLARQIVGKNPDSF 339 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~-~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~~~~~~~~~~ 339 (478)
+++|+|+| |+.++..|.+. +..|++||.|++.++.+.. .+ -.+++++|+.+ .|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~~~~------~~~~v~gd~t~~~~L~~a------------ 62 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLADEL------DTHVVIGDATDEDVLEEA------------ 62 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhhhhc------ceEEEEecCCCHHHHHhc------------
Confidence 78999999 67788877754 6799999999999887322 22 36888899876 45542
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCC
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDS 369 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s 369 (478)
.-..+|+++....+
T Consensus 63 ----------------gi~~aD~vva~t~~ 76 (225)
T COG0569 63 ----------------GIDDADAVVAATGN 76 (225)
T ss_pred ----------------CCCcCCEEEEeeCC
Confidence 34679999997544
No 282
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=89.85 E-value=3.2 Score=42.56 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=34.3
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+.+|.+++.+++-++.|++ +|.
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~-~Ga 211 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG-FGA 211 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-hCC
Confidence 46899999864 555555666667899999999999999976 564
No 283
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.82 E-value=2.4 Score=42.65 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=29.8
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
++|.+||+| |+.++..+... +.+|+++|.+++.++.+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~ 45 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLA 45 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH
Confidence 589999999 44555555433 6799999999999887654
No 284
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.81 E-value=1.5 Score=37.40 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=58.9
Q ss_pred EEEEeCchh--HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCCCCCCCc
Q 038592 266 ALCVGVGGG--ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 266 VLvIGlGgG--~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~~~~ 341 (478)
|+++|.|.- .++..|.+ .+.+|++||.|++.++.+++.+ +.++.+|+.+. ++++
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~-------~~~i~gd~~~~~~l~~a-------------- 58 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEG-------VEVIYGDATDPEVLERA-------------- 58 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTT-------SEEEES-TTSHHHHHHT--------------
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcc-------cccccccchhhhHHhhc--------------
Confidence 578888732 24455554 3469999999999999998763 57999999864 4441
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
.-.+.|.|++..++.. . --.+-...+.+.+...+++-+..+
T Consensus 59 --------------~i~~a~~vv~~~~~d~------------~-n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 59 --------------GIEKADAVVILTDDDE------------E-NLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp --------------TGGCESEEEEESSSHH------------H-HHHHHHHHHHHTTTSEEEEEESSH
T ss_pred --------------CccccCEEEEccCCHH------------H-HHHHHHHHHHHCCCCeEEEEECCH
Confidence 3456899999654211 1 122233345566666676555443
No 285
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.71 E-value=2.5 Score=42.82 Aligned_cols=95 Identities=24% Similarity=0.322 Sum_probs=57.9
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||+|.|+ |.++..+.+..+.+ |.+++.+++-.+.|++ +|.. .-+.....+ .+-+.+..
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~-~ga~--~~i~~~~~~-~~~~~~~~------------ 227 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA-LGAD--FVINSGQDD-VQEIRELT------------ 227 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCCC--EEEcCCcch-HHHHHHHh------------
Confidence 46999998652 33444455556776 9999999999999966 5642 111112223 33333321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+||--+ + ....+..+.+.|+++|.+++
T Consensus 228 ---------------~~~~~d~vid~~--g--------------~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 228 ---------------SGAGADVAIECS--G--------------NTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred ---------------CCCCCCEEEECC--C--------------CHHHHHHHHHHhhcCCEEEE
Confidence 234699887511 1 13456677788999999875
No 286
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=89.69 E-value=4.8 Score=37.62 Aligned_cols=116 Identities=18% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCeEEEEeCc-hhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVG-GGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlG-gG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
.++|.|||.| .|. ++..+ +.++++|.+++..+.-...+... + +...+--+.+++
T Consensus 36 g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~~~-~--------~~~~~l~ell~~-------------- 91 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGADEF-G--------VEYVSLDELLAQ-------------- 91 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHHHT-T--------EEESSHHHHHHH--------------
T ss_pred CCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhcccc-c--------ceeeehhhhcch--------------
Confidence 5799999999 343 44444 35789999999999877633222 1 122244455543
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE 420 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~ 420 (478)
-|+|++=+...+. ..++++.++|..++ + |.+++|+..-.----+.+++.
T Consensus 92 -------------------aDiv~~~~plt~~-------T~~li~~~~l~~mk----~-ga~lvN~aRG~~vde~aL~~a 140 (178)
T PF02826_consen 92 -------------------ADIVSLHLPLTPE-------TRGLINAEFLAKMK----P-GAVLVNVARGELVDEDALLDA 140 (178)
T ss_dssp --------------------SEEEE-SSSSTT-------TTTSBSHHHHHTST----T-TEEEEESSSGGGB-HHHHHHH
T ss_pred -------------------hhhhhhhhccccc-------cceeeeeeeeeccc----c-ceEEEeccchhhhhhhHHHHH
Confidence 6899995543322 24578888887654 3 667789764311112345666
Q ss_pred HHHhcCccEEEee
Q 038592 421 FRDVFQELYEIDV 433 (478)
Q Consensus 421 l~~vF~~v~~~~v 433 (478)
|++=--.-+.+++
T Consensus 141 L~~g~i~ga~lDV 153 (178)
T PF02826_consen 141 LESGKIAGAALDV 153 (178)
T ss_dssp HHTTSEEEEEESS
T ss_pred HhhccCceEEEEC
Confidence 6653222344444
No 287
>PLN02256 arogenate dehydrogenase
Probab=89.60 E-value=2.9 Score=42.80 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=66.6
Q ss_pred CCCCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592 261 GFRPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 261 g~~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
+...+|.+||+| ||+++..|.+. +.+|.+++.++. .+.|++ +|. .. ..|.-+.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~-G~~V~~~d~~~~-~~~a~~-~gv------~~-~~~~~e~~-------------- 89 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ-GHTVLATSRSDY-SDIAAE-LGV------SF-FRDPDDFC-------------- 89 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-CCEEEEEECccH-HHHHHH-cCC------ee-eCCHHHHh--------------
Confidence 446799999999 67788777653 578999999974 355554 343 11 23333322
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHH-HHccCcCcEEEEEeCCCCchHHHHH
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAA-RLILSDFGIFVMNVIPPNRSFYDML 417 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~-~~~L~~~Gilv~N~~~~~~~~~~~v 417 (478)
....|+|++-+ ||. ...+++..+ ...++++ .+++++.+- +..+
T Consensus 90 ------------------~~~aDvVilav-----------p~~--~~~~vl~~l~~~~l~~~-~iviDv~Sv----K~~~ 133 (304)
T PLN02256 90 ------------------EEHPDVVLLCT-----------SIL--STEAVLRSLPLQRLKRS-TLFVDVLSV----KEFP 133 (304)
T ss_pred ------------------hCCCCEEEEec-----------CHH--HHHHHHHhhhhhccCCC-CEEEecCCc----hHHH
Confidence 12369999922 332 346777777 4567765 566788764 2345
Q ss_pred HHHHHHhcC
Q 038592 418 IQEFRDVFQ 426 (478)
Q Consensus 418 ~~~l~~vF~ 426 (478)
++.+++.++
T Consensus 134 ~~~~~~~l~ 142 (304)
T PLN02256 134 KNLLLQVLP 142 (304)
T ss_pred HHHHHHhCC
Confidence 667777765
No 288
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.54 E-value=3.9 Score=42.68 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+. +|.+++.+++..+.++++++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~ 231 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA 231 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc
Confidence 46899998876 6666667766675 699999999999999998653
No 289
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=89.19 E-value=3.7 Score=41.89 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=58.5
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |.++..+.+..+.+ |.+++.+++-.+.+++ +|.. .-+.....+ .+.+.+..
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~Ga~--~~i~~~~~~-~~~~~~~~------------ 224 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGAM--QTFNSREMS-APQIQSVL------------ 224 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCCc--eEecCcccC-HHHHHHHh------------
Confidence 46999998653 33444455556775 7899999999999866 5542 111111223 22232211
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
.+..+|.+++|.-.. ...+....+.|+++|.+++
T Consensus 225 ---------------~~~~~d~~v~d~~G~---------------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 225 ---------------RELRFDQLILETAGV---------------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred ---------------cCCCCCeEEEECCCC---------------HHHHHHHHHHhhcCCEEEE
Confidence 234588777774211 3467778899999999875
No 290
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.15 E-value=3.1 Score=43.10 Aligned_cols=95 Identities=24% Similarity=0.295 Sum_probs=59.0
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |.++..+.+..+. +|.+++.++.-.+.|++ +|.. .-+.....|..+.+.+.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~-~Ga~--~~i~~~~~~~~~~i~~~------------- 255 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE-LGAT--ATVNAGDPNAVEQVREL------------- 255 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-cCCc--eEeCCCchhHHHHHHHH-------------
Confidence 46899998652 4455555666677 79999999999999976 4642 11111122333444332
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+||- . .+ ..+.++.+.+.|+++|.+++
T Consensus 256 ---------------~~~g~d~vid-~-~G--------------~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 256 ---------------TGGGVDYAFE-M-AG--------------SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred ---------------hCCCCCEEEE-C-CC--------------ChHHHHHHHHHHhcCCEEEE
Confidence 1225898874 2 11 13466777788999998875
No 291
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.71 E-value=3.3 Score=42.70 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=48.0
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK 326 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~ 326 (478)
+.+|.|||+| .|+-+.-+.-.++..|+..|++..-++.-...|+ .|+++.......+-+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~----~rv~~~~st~~~iee~ 228 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG----GRVHTLYSTPSNIEEA 228 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC----ceeEEEEcCHHHHHHH
Confidence 6789999999 5666655665668999999999999999888886 5788888887776443
No 292
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.57 E-value=1.9 Score=43.47 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=31.5
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
++|.+||+| |..++..+... +.+|.++|.+++.++.+++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~~~~~~~~~~ 46 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDPAALSRGLDS 46 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHH
Confidence 589999999 55677666544 68999999999998866543
No 293
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.51 E-value=5.7 Score=39.39 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=32.6
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+.+ |.+++.++.-.+.|++ +|.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga 166 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS-FGA 166 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cCC
Confidence 46899998763 44555566666765 9999999999999987 454
No 294
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.32 E-value=2.2 Score=43.51 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
..+|+|||.|.-+ +...|+ .++.+|++++.++.-.+.++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~-~~Ga~V~v~~r~~~~~~~~~~ 193 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLK-ALGANVTVGARKSAHLARITE 193 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH
Confidence 5799999999533 233333 357899999999987777765
No 295
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=88.30 E-value=5 Score=40.63 Aligned_cols=94 Identities=16% Similarity=0.246 Sum_probs=60.4
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
.+|||.|.+ .|..+..+.++.+. +|.++.-+++-.+.+++.+|.. .-+.....|..+.+++.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~--~vi~~~~~~~~~~i~~~------------- 220 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFD--AAINYKTDNVAERLREL------------- 220 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCc--EEEECCCCCHHHHHHHH-------------
Confidence 689999963 45566666667787 8999999999888888767752 21111123444444432
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+|+ |.-.+ . .+..+.+.|+++|.++.
T Consensus 221 ---------------~~~gvd~vi-d~~g~---------------~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 221 ---------------CPEGVDVYF-DNVGG---------------E-ISDTVISQMNENSHIIL 252 (345)
T ss_pred ---------------CCCCceEEE-ECCCc---------------H-HHHHHHHHhccCCEEEE
Confidence 224589887 42111 1 24667788999999885
No 296
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=87.94 E-value=4.2 Score=40.90 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=74.4
Q ss_pred eEEEEeCchhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccc
Q 038592 265 KALCVGVGGGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACS 343 (478)
Q Consensus 265 ~VLvIGlGgG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~ 343 (478)
+|+.+-+|.|++...+.+. ++ .+.++|+|+..++..+..|.-. ++++|..++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~----------------- 57 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEK----------------- 57 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchh-----------------
Confidence 6788889999888777754 45 5788999999999999988521 667777665322
Q ss_pred ccCCCccCCCCCCCCceeEEEEeCCCCCCC-----CCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC----CchHH
Q 038592 344 LKDGNFLDNSDRVDNKFDVIMVDLDSGDAR-----NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP----NRSFY 414 (478)
Q Consensus 344 ~~~~~~~~~~~~~~~~yDvIivDv~s~d~~-----~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~----~~~~~ 414 (478)
.....+|+|+.+....+.+ .+...+ ..-+-.+|++.+.. ++|.=+++=|+..- ....+
T Consensus 58 -----------~~~~~~D~l~~gpPCq~fS~ag~~~~~~d~-r~~L~~~~~~~i~~-~~P~~~v~ENV~g~~~~~~~~~~ 124 (275)
T cd00315 58 -----------DFIPDIDLLTGGFPCQPFSIAGKRKGFEDT-RGTLFFEIIRILKE-KKPKYFLLENVKGLLTHDNGNTL 124 (275)
T ss_pred -----------hcCCCCCEEEeCCCChhhhHHhhcCCCCCc-hHHHHHHHHHHHHh-cCCCEEEEEcCcchhccCchHHH
Confidence 0034599999976443221 111111 11122456655554 47765555588653 23445
Q ss_pred HHHHHHHHH
Q 038592 415 DMLIQEFRD 423 (478)
Q Consensus 415 ~~v~~~l~~ 423 (478)
+.+++.|.+
T Consensus 125 ~~i~~~l~~ 133 (275)
T cd00315 125 KVILNTLEE 133 (275)
T ss_pred HHHHHHHHh
Confidence 566666654
No 297
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.84 E-value=5.1 Score=40.05 Aligned_cols=96 Identities=22% Similarity=0.336 Sum_probs=60.4
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+|||.|.|+ |.++..+.+..+.+|++++.+++..+.+++ +|.. ..+.....+..+.++.
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~--------------- 227 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE-LGAD--EVLNSLDDSPKDKKAA--------------- 227 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-hCCC--EEEcCCCcCHHHHHHH---------------
Confidence 46899977552 555556666678899999999999999966 5542 1111111233333311
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
..+..+|+++- . .+ ....++.+.+.|+++|.++.-
T Consensus 228 -------------~~~~~~D~vid-~-~g--------------~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 228 -------------GLGGGFDVIFD-F-VG--------------TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred -------------hcCCCceEEEE-C-CC--------------CHHHHHHHHHHhhcCCEEEEE
Confidence 13456997764 1 10 135778889999999998853
No 298
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.77 E-value=2.1 Score=36.96 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=61.0
Q ss_pred chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccC
Q 038592 272 GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLD 351 (478)
Q Consensus 272 GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (478)
|-|.++..+.++.+.+|.+++.++.-.+.++++ |.. .-+.....|..+.+++..
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~-Ga~--~~~~~~~~~~~~~i~~~~----------------------- 54 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL-GAD--HVIDYSDDDFVEQIRELT----------------------- 54 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TES--EEEETTTSSHHHHHHHHT-----------------------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh-ccc--cccccccccccccccccc-----------------------
Confidence 457777777777789999999999999999885 421 111111123455555531
Q ss_pred CCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 352 NSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 352 ~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
.+..+|+||--+ + ..+.++.+.+.|+++|.+++--.
T Consensus 55 ----~~~~~d~vid~~--g--------------~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 55 ----GGRGVDVVIDCV--G--------------SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp ----TTSSEEEEEESS--S--------------SHHHHHHHHHHEEEEEEEEEESS
T ss_pred ----ccccceEEEEec--C--------------cHHHHHHHHHHhccCCEEEEEEc
Confidence 235799998721 1 26789999999999999986433
No 299
>PLN02712 arogenate dehydrogenase
Probab=87.68 E-value=3.9 Score=46.45 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=64.6
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+.+|.|||+| ||.+++.|.+. +.+|.+++.+... +.|+++ |. . ...|..+.+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~~~dr~~~~-~~A~~~-Gv------~-~~~d~~e~~---------------- 105 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ-GHTVLAHSRSDHS-LAARSL-GV------S-FFLDPHDLC---------------- 105 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHHHc-CC------E-EeCCHHHHh----------------
Confidence 5789999999 67788887764 6799999988553 455443 42 1 133433332
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH-HccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR-LILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~-~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
....|+|++-+ |+. ...+++..+. ..+++ |.+++++.+-.. .+++
T Consensus 106 ----------------~~~aDvViLav-----------P~~--~~~~vl~~l~~~~l~~-g~iVvDv~SvK~----~~~~ 151 (667)
T PLN02712 106 ----------------ERHPDVILLCT-----------SII--STENVLKSLPLQRLKR-NTLFVDVLSVKE----FAKN 151 (667)
T ss_pred ----------------hcCCCEEEEcC-----------CHH--HHHHHHHhhhhhcCCC-CeEEEECCCCcH----HHHH
Confidence 12369999932 332 3466777765 45666 457888875543 3455
Q ss_pred HHHHhcC
Q 038592 420 EFRDVFQ 426 (478)
Q Consensus 420 ~l~~vF~ 426 (478)
.+.+.++
T Consensus 152 ~l~~~l~ 158 (667)
T PLN02712 152 LLLDYLP 158 (667)
T ss_pred HHHHhcC
Confidence 5666654
No 300
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.67 E-value=8.4 Score=41.45 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=28.8
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
.++|+|+|.|. |.......+.++.+|+++|+||.-...|..
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~ 253 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM 253 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh
Confidence 57999999994 332222333457899999999987665544
No 301
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=87.47 E-value=9.3 Score=38.73 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=58.8
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+|.+||+| |+.++.-|.+. +.+|.+.+.+++.++.+++. +... ..+..+..+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~~dr~~~~~~~l~~~-g~~~-------~~s~~~~~~~---------------- 56 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVGYDHDQDAVKAMKED-RTTG-------VANLRELSQR---------------- 56 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-CCcc-------cCCHHHHHhh----------------
Confidence 68999999 34566666543 67999999999988877653 2211 1222222211
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
-..-|+|++=+ |.. ...+.++.+...|+++ -++++..+..
T Consensus 57 --------------~~~~dvIi~~v------------p~~-~~~~v~~~l~~~l~~g-~ivid~st~~ 96 (298)
T TIGR00872 57 --------------LSAPRVVWVMV------------PHG-IVDAVLEELAPTLEKG-DIVIDGGNSY 96 (298)
T ss_pred --------------cCCCCEEEEEc------------Cch-HHHHHHHHHHhhCCCC-CEEEECCCCC
Confidence 12468898833 333 4577788888888775 5667776554
No 302
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=87.30 E-value=8.2 Score=40.70 Aligned_cols=44 Identities=16% Similarity=0.119 Sum_probs=33.1
Q ss_pred CCeEEEEeC-c-hhHHHHHHHhhCC---CEEEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGV-G-GGALVSFLRTQLD---FEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGl-G-gG~L~~~L~~~~~---~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
..+|||+|+ | -|.++..+.+..+ .+|.+++.+++-++.|+++++
T Consensus 176 g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~ 224 (410)
T cd08238 176 GGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFP 224 (410)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcc
Confidence 358999984 3 4556655566543 389999999999999999765
No 303
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.19 E-value=6.6 Score=32.21 Aligned_cols=56 Identities=25% Similarity=0.232 Sum_probs=37.0
Q ss_pred eEEEEeCc--hhHHHHHHHhhC--CCEEEEE-ECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQL--DFEVVGV-EMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK 326 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~--~~~V~~V-EiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~ 326 (478)
+|.+||.| |.+++.-|.+.- ..+|..+ +.+++-++-..+.++ ..+...|-.+.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc
Confidence 57889888 445555555542 2689966 999998887766665 34444466666643
No 304
>PHA01634 hypothetical protein
Probab=87.19 E-value=1.6 Score=39.36 Aligned_cols=147 Identities=10% Similarity=0.066 Sum_probs=91.0
Q ss_pred ccchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCe
Q 038592 234 VLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFL 313 (478)
Q Consensus 234 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl 313 (478)
.+.+.|-+.....-..+.- ..++|++||.+-|..+.+..-.-..+|.++|.+|...+..++...+.
T Consensus 9 ~~~c~ywrey~~~Y~~idv---------k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n----- 74 (156)
T PHA01634 9 KLECDYWREYPHAYGMLNV---------YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF----- 74 (156)
T ss_pred HccchHHHHHHHHhhheee---------cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh-----
Confidence 3567888877777655532 25799999999999887766443469999999999999988744321
Q ss_pred EEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 038592 314 QVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAAR 393 (478)
Q Consensus 314 ~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~ 393 (478)
.++.-|.--- + .+..=+.||+-.+|.+.-. ..++.+.|+..+
T Consensus 75 -nI~DK~v~~~-e--------------------------W~~~Y~~~Di~~iDCeGCE----------~~l~v~~l~ky~ 116 (156)
T PHA01634 75 -NICDKAVMKG-E--------------------------WNGEYEDVDIFVMDCEGCE----------EKLNVSMLKKYK 116 (156)
T ss_pred -eeeeceeecc-c--------------------------ccccCCCcceEEEEccchH----------HhcCHHHHHHHH
Confidence 1111111100 0 0113356999999986533 346677777776
Q ss_pred HccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccEEEeecccceEEEEEE
Q 038592 394 LILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELYEIDVGNEENFVLIAT 444 (478)
Q Consensus 394 ~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~~~~v~~~~N~Vl~a~ 444 (478)
+-. +.+.-|.. .-+..|++.....+.+- .+++-++.+|.
T Consensus 117 q~c-----i~ihdwt~------nrvel~rk~~g~~ftyv-sddgre~~lck 155 (156)
T PHA01634 117 QWC-----IGIHDWTK------NRVELMRKMEGATFTYV-SDDGREITLCK 155 (156)
T ss_pred hhe-----eeeehhhh------hHHHHHHHhcCcEEEEE-ccCCcEEEEee
Confidence 532 22333332 23566777777666554 34456666663
No 305
>PLN02740 Alcohol dehydrogenase-like
Probab=87.14 E-value=8.9 Score=39.91 Aligned_cols=44 Identities=16% Similarity=0.344 Sum_probs=33.1
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+. +|.+++.+++-++.|++ +|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~-~Ga 244 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE-MGI 244 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH-cCC
Confidence 46999998752 4455555566677 79999999999999976 464
No 306
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=87.02 E-value=3 Score=43.93 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCeEEEEe-Cc--hhHHHHHHHhhCCCEEEEEECCh
Q 038592 263 RPKALCVG-VG--GGALVSFLRTQLDFEVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIG-lG--gG~L~~~L~~~~~~~V~~VEiDp 295 (478)
..+|.||| +| ||+++..|.+. +..|++++.++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-G~~V~~~d~~~ 132 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEQDD 132 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-CCeEEEeCCCc
Confidence 47899999 78 67788887764 57899998763
No 307
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=86.80 E-value=3.5 Score=41.90 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=31.1
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
.+|.|||+| |++++..|.+. +.+|+++|.+++.++.++.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~~~~~~~~~ 43 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVRLWDADPAAAAAAPA 43 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeEEEeCCHHHHHHHHH
Confidence 479999999 55677777664 6799999999998887654
No 308
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=86.71 E-value=7.7 Score=39.16 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=30.3
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
.+|.+||+| |+.++..|.+. +.+|++++.++..++..++.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~~ 43 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN-GHDVTLWARDPEQAAEINAD 43 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc
Confidence 379999999 55666666643 57899999999888766554
No 309
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=86.68 E-value=9.7 Score=40.57 Aligned_cols=43 Identities=21% Similarity=0.388 Sum_probs=26.0
Q ss_pred CCeEEEEe---CchhH--HHHHHHhhC---CCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVG---VGGGA--LVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIG---lGgG~--L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
+.+|+.|. +|.|- ++.-|...+ +.+|.+||+||. .-+..+||+
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ--~~lt~~~g~ 170 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ--ASLSALLGV 170 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC--CCHHHHcCC
Confidence 34665555 44442 333333332 679999999998 334567875
No 310
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.40 E-value=8 Score=38.62 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=60.4
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.+ .|.++.-+.+..+.+|.++.-+++-.+.+++ +|.. .-+.....|..+.+.+.
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga~--~vi~~~~~~~~~~v~~~------------- 207 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGFD--AVFNYKTVSLEEALKEA------------- 207 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCCC--EEEeCCCccHHHHHHHH-------------
Confidence 4689999853 4556666666678899999999999999988 6752 11111122333333331
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+|+ |.-. .+.++.+.+.|+++|.++.
T Consensus 208 ---------------~~~gvd~vl-d~~g----------------~~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 208 ---------------APDGIDCYF-DNVG----------------GEFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred ---------------CCCCcEEEE-ECCC----------------HHHHHHHHHhhccCCEEEE
Confidence 224589877 4211 2456778888999999874
No 311
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=86.38 E-value=0.7 Score=42.62 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=34.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhc
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYF 305 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~F 305 (478)
.++++.+|+|.|-|. +-...+ .-.|.++||||+-++++++..
T Consensus 49 gkkl~DLgcgcGmLs-~a~sm~~~e~vlGfDIdpeALEIf~rNa 91 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLS-IAFSMPKNESVLGFDIDPEALEIFTRNA 91 (185)
T ss_pred CcchhhhcCchhhhH-HHhhcCCCceEEeeecCHHHHHHHhhch
Confidence 578999999999988 333445 469999999999999998764
No 312
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.26 E-value=3.9 Score=42.32 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=62.9
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC----------CCC---CCCeEEEEchHHHHHHHH
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG----------LED---GEFLQVSVGDAIEFLEKL 327 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg----------~~~---d~rl~v~v~Dg~~~l~~~ 327 (478)
.++|.|||+| |..++..+.. .+.+|+.+|.+|+.++.++.+.. +.. ..++++.. | +++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~----l~~- 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-T----IEA- 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-C----HHH-
Confidence 3689999999 5556655554 37999999999998877655421 110 01222111 1 111
Q ss_pred HhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEe
Q 038592 328 ARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
.-..-|+|+--+ |+.+ +..++|..+-+.++++-+|..|.
T Consensus 80 ----------------------------av~~aDlViEav------------pE~l~vK~~lf~~l~~~~~~~aIlaSnT 119 (321)
T PRK07066 80 ----------------------------CVADADFIQESA------------PEREALKLELHERISRAAKPDAIIASST 119 (321)
T ss_pred ----------------------------HhcCCCEEEECC------------cCCHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 112357777732 4443 46788899999999988888888
Q ss_pred CCC
Q 038592 407 IPP 409 (478)
Q Consensus 407 ~~~ 409 (478)
.+-
T Consensus 120 S~l 122 (321)
T PRK07066 120 SGL 122 (321)
T ss_pred Ccc
Confidence 754
No 313
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=86.04 E-value=4 Score=43.17 Aligned_cols=85 Identities=13% Similarity=0.267 Sum_probs=54.2
Q ss_pred EEEEECChHHHHHHHHhcCC-CCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEe
Q 038592 288 VVGVEMDEVVLRVARQYFGL-EDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVD 366 (478)
Q Consensus 288 V~~VEiDp~Vl~vA~~~Fg~-~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivD 366 (478)
+.++|||+.+++.|+..--- ...+.+++..+|+..+-. .-..||+||.+
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~------------------------------~~~~~gvvI~N 306 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKE------------------------------PLEEYGVVISN 306 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCC------------------------------CCCcCCEEEeC
Confidence 77999999999999976421 124679999999987721 11679999996
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 367 LDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 367 v~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
..=+.-.+.-. -...|| .+|.+.+++.++--+.+++
T Consensus 307 PPYGeRlg~~~-~v~~LY-~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 307 PPYGERLGSEA-LVAKLY-REFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred CCcchhcCChh-hHHHHH-HHHHHHHHHHhcCCceEEE
Confidence 43332211000 001122 5677777788877666664
No 314
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=86.03 E-value=13 Score=37.57 Aligned_cols=107 Identities=24% Similarity=0.275 Sum_probs=64.6
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+|.+||+| |..++..|.+. +.+|.+.+.+++..+.+++ .|. + ...+..+.+++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-g~~v~v~dr~~~~~~~~~~-~g~------~-~~~s~~~~~~~---------------- 56 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-GHEVVGYDVNQEAVDVAGK-LGI------T-ARHSLEELVSK---------------- 56 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH-CCC------e-ecCCHHHHHHh----------------
Confidence 68899999 44566656543 5789999999988777654 332 1 12233344322
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR 422 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~ 422 (478)
....|+||+-+.+ .. ..++.+..+...|++ |-+++++.+.++.....+.+.+.
T Consensus 57 --------------~~~advVi~~vp~-----------~~-~~~~v~~~i~~~l~~-g~ivid~st~~~~~~~~~~~~~~ 109 (299)
T PRK12490 57 --------------LEAPRTIWVMVPA-----------GE-VTESVIKDLYPLLSP-GDIVVDGGNSRYKDDLRRAEELA 109 (299)
T ss_pred --------------CCCCCEEEEEecC-----------ch-HHHHHHHHHhccCCC-CCEEEECCCCCchhHHHHHHHHH
Confidence 1235888884322 11 235566777777766 55777886665555556666665
Q ss_pred H
Q 038592 423 D 423 (478)
Q Consensus 423 ~ 423 (478)
+
T Consensus 110 ~ 110 (299)
T PRK12490 110 E 110 (299)
T ss_pred H
Confidence 4
No 315
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.54 E-value=29 Score=37.20 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=29.4
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
.++|+|+|.|. |.......+.++.+|.++|.||.-...|+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~ 236 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM 236 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh
Confidence 57999999995 433333444568899999999976655544
No 316
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=85.38 E-value=5.3 Score=40.33 Aligned_cols=121 Identities=18% Similarity=0.078 Sum_probs=63.8
Q ss_pred CCeEEEEeCch---hHHHHHHHh-hCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGG---GALVSFLRT-QLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGg---G~L~~~L~~-~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~ 338 (478)
-...|.||+|- |.+-...++ .++.+|+.||.||.|+.-++.-+.-....+..++.+|.++-=.=+ ....
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL-~~p~------ 141 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAIL-AHPE------ 141 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHH-CSHH------
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHh-cCHH------
Confidence 46899999994 333322222 357999999999999999998876433334899999988742111 1000
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..... .-++..=++++.+-. +-|..=--...+..++..|.||..|++.-.+.
T Consensus 142 ----------~~~~l-D~~rPVavll~~vLh--------~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 142 ----------VRGLL-DFDRPVAVLLVAVLH--------FVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp ----------HHCC---TTS--EEEECT-GG--------GS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred ----------HHhcC-CCCCCeeeeeeeeec--------cCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 00000 124556677775521 11121123789999999999999999865544
No 317
>PRK08655 prephenate dehydrogenase; Provisional
Probab=85.29 E-value=13 Score=40.07 Aligned_cols=102 Identities=22% Similarity=0.404 Sum_probs=61.8
Q ss_pred eEEEEe-Cc--hhHHHHHHHhhCCCEEEEEECChHHH-HHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 265 KALCVG-VG--GGALVSFLRTQLDFEVVGVEMDEVVL-RVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 265 ~VLvIG-lG--gG~L~~~L~~~~~~~V~~VEiDp~Vl-~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
+|++|| +| |++++..|.+. +.+|++++.++... +.|.+ +|. . ...|..+.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-G~~V~v~~r~~~~~~~~a~~-~gv------~-~~~~~~e~~---------------- 56 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-GFEVIVTGRDPKKGKEVAKE-LGV------E-YANDNIDAA---------------- 56 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHH-cCC------e-eccCHHHHh----------------
Confidence 689998 56 45577766653 56899999998775 55544 332 1 112222222
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE 420 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~ 420 (478)
...|+||+-+ |.. ...+++..+...++++. +++++.+-.. ...+.
T Consensus 57 -----------------~~aDvVIlav------------p~~-~~~~vl~~l~~~l~~~~-iViDvsSvK~----~~~~~ 101 (437)
T PRK08655 57 -----------------KDADIVIISV------------PIN-VTEDVIKEVAPHVKEGS-LLMDVTSVKE----RPVEA 101 (437)
T ss_pred -----------------ccCCEEEEec------------CHH-HHHHHHHHHHhhCCCCC-EEEEcccccH----HHHHH
Confidence 2369999832 222 23678888888888755 6666665433 33556
Q ss_pred HHHhcC
Q 038592 421 FRDVFQ 426 (478)
Q Consensus 421 l~~vF~ 426 (478)
+.+.++
T Consensus 102 l~~~~~ 107 (437)
T PRK08655 102 MEEYAP 107 (437)
T ss_pred HHHhcC
Confidence 666665
No 318
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=85.05 E-value=3.6 Score=41.88 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=25.1
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECCh
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp 295 (478)
..+|+|||+| ||.++..|.+. +.+|+.+.-++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 5689999999 66778777664 57888888876
No 319
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=85.04 E-value=6.6 Score=40.28 Aligned_cols=44 Identities=25% Similarity=0.392 Sum_probs=33.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEEC---ChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEM---DEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEi---Dp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+.+|++++. ++.-.+.|++ +|.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~-~Ga 220 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE-LGA 220 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH-cCC
Confidence 46899999863 55666666667789999986 7888888876 553
No 320
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=85.02 E-value=20 Score=36.07 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=33.4
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.+ .|.++..+.+..+.+|.++.-+++-.+.+++ +|.
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lGa 184 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LGF 184 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC
Confidence 4689999953 4555555666668899999999999999976 564
No 321
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.99 E-value=6.4 Score=39.32 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=28.1
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
+|+|||+| |+.++..|.+. +.+|+.++-+++-++..++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~~~~~~~~~~ 41 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARRGAHLDALNE 41 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECChHHHHHHHH
Confidence 69999998 45566666643 5789999998877766554
No 322
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.90 E-value=12 Score=37.42 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.3
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
.+|.+||+| |+.++..+.+ .+.+|.+++.++..++.+.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-~g~~v~~~d~~~~~~~~~~~ 43 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-AGYSLVVYDRNPEAVAEVIA 43 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHH
Confidence 379999999 3456666654 36789999999988776544
No 323
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=84.89 E-value=1.9 Score=43.86 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=58.4
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.+|+|+|+| ||.++-+|.+. +.+|+.|.-.++-++.-++--| +++. .++..+.-... ..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~~~i~~~~G------l~i~-~~g~~~~~~~~--------~~--- 63 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRLAAYQQAGG------LTLV-EQGQASLYAIP--------AE--- 63 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHHHHHhhcCC------eEEe-eCCcceeeccC--------CC---
Confidence 489999999 56677777654 6789999988655554443222 2222 12211100000 00
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
.......||+||+-+- .+...+.++.++..+.++..++.
T Consensus 64 -----------~~~~~~~~D~viv~vK-------------~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 64 -----------TADAAEPIHRLLLACK-------------AYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred -----------CcccccccCEEEEECC-------------HHhHHHHHHHHHhhCCCCCEEEE
Confidence 0012357999999432 23457889999999999886653
No 324
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.87 E-value=10 Score=38.56 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.| .|.++..+.+..+. .|.+++.+++-.+++++ +|. +.-+.....|..+-+.+..
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~--~~~v~~~~~~~~~~i~~~~------------ 231 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE-YGA--TDIVDYKNGDVVEQILKLT------------ 231 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC--ceEecCCCCCHHHHHHHHh------------
Confidence 4689999755 23344445555666 69999999999999986 564 2111211223333333311
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+|+--+ + ....+..+.+.|+++|.++.
T Consensus 232 ---------------~~~~~d~vld~~--g--------------~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 232 ---------------GGKGVDAVIIAG--G--------------GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred ---------------CCCCCcEEEECC--C--------------CHHHHHHHHHHhhcCCEEEE
Confidence 234589887511 1 13467788889999998874
No 325
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=84.68 E-value=18 Score=36.67 Aligned_cols=108 Identities=15% Similarity=0.078 Sum_probs=64.1
Q ss_pred eEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 265 KALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 265 ~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+|.+||+|. ..++.-|.+. +.+|.+++.+++.++.+.+ .|. + ...+..+.++.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v~dr~~~~~~~~~~-~g~------~-~~~~~~e~~~~---------------- 56 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-GHEVVGYDRNPEAVEALAE-EGA------T-GADSLEELVAK---------------- 56 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-CCeEEEEECCHHHHHHHHH-CCC------e-ecCCHHHHHhh----------------
Confidence 689999993 4466656543 6799999999988877654 232 1 12233344322
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR 422 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~ 422 (478)
....|+|++=+.+ .. ...+.+..+...|+++ -+++++.+.++.....+.+.++
T Consensus 57 --------------~~~~dvvi~~v~~-----------~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~ 109 (301)
T PRK09599 57 --------------LPAPRVVWLMVPA-----------GE-ITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLA 109 (301)
T ss_pred --------------cCCCCEEEEEecC-----------Cc-HHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHH
Confidence 1125888884322 11 2355667777788775 5666776655544444555555
Q ss_pred Hh
Q 038592 423 DV 424 (478)
Q Consensus 423 ~v 424 (478)
+.
T Consensus 110 ~~ 111 (301)
T PRK09599 110 EK 111 (301)
T ss_pred Hc
Confidence 44
No 326
>PRK06545 prephenate dehydrogenase; Validated
Probab=84.59 E-value=5.7 Score=41.43 Aligned_cols=97 Identities=24% Similarity=0.347 Sum_probs=57.3
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh-cCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY-FGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~-Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
+|.+||+| ||+++..|.+. +..+.+++.|+.-.+.++.. ++...+ ...| +++
T Consensus 2 ~I~iIG~GliG~siA~~L~~~-G~~v~i~~~~~~~~~~~~a~~~~~~~~-----~~~~----~~~--------------- 56 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA-GPDVFIIGYDPSAAQLARALGFGVIDE-----LAAD----LQR--------------- 56 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc-CCCeEEEEeCCCHHHHHHHhcCCCCcc-----cccC----HHH---------------
Confidence 79999999 78888888765 44666677776655554321 221110 0111 111
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH-ccCcCcEEEEEeCCCCchHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL-ILSDFGIFVMNVIPPNRSFY 414 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~-~L~~~Gilv~N~~~~~~~~~ 414 (478)
.-...|+||+-+ ||. ...++++.+.. .++++ .+++++.+-.....
T Consensus 57 --------------~~~~aDlVilav-----------P~~--~~~~vl~~l~~~~l~~~-~ivtDv~SvK~~i~ 102 (359)
T PRK06545 57 --------------AAAEADLIVLAV-----------PVD--ATAALLAELADLELKPG-VIVTDVGSVKGAIL 102 (359)
T ss_pred --------------HhcCCCEEEEeC-----------CHH--HHHHHHHHHhhcCCCCC-cEEEeCccccHHHH
Confidence 123479999932 333 34678888887 47765 67777776654433
No 327
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.36 E-value=15 Score=39.00 Aligned_cols=37 Identities=32% Similarity=0.544 Sum_probs=27.5
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVAR 302 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~ 302 (478)
+|.+||+| |..++..|.+ .+.+|+++|.|+..++...
T Consensus 2 kI~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQEKVDKLN 40 (411)
T ss_pred EEEEECCCchhHHHHHHHHh-cCCeEEEEECCHHHHHHhh
Confidence 68999999 3445555543 3679999999999887644
No 328
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=84.16 E-value=6.4 Score=33.52 Aligned_cols=55 Identities=24% Similarity=0.269 Sum_probs=37.7
Q ss_pred eEEEEeCchhH--HHHHHHhh-CCCEEE-EEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592 265 KALCVGVGGGA--LVSFLRTQ-LDFEVV-GVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK 326 (478)
Q Consensus 265 ~VLvIGlGgG~--L~~~L~~~-~~~~V~-~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~ 326 (478)
||.+||+|..+ ....+.+. .+.+++ ++|.+++-.+.+.+.++.+ ...|..+.+..
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-------~~~~~~~ll~~ 60 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-------VYTDLEELLAD 60 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-------EESSHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-------chhHHHHHHHh
Confidence 79999998653 22223333 456765 6899999988877777753 67777777643
No 329
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=83.98 E-value=4.5 Score=45.55 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=41.6
Q ss_pred CCeEEEEeCc-hh-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVG-GG-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlG-gG-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
..+|+|+|.| -| .+++.|.+. +.+++++|.|++.++.++++ | .+++.||+.+-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-g------~~v~~GDat~~ 454 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPDHIETLRKF-G------MKVFYGDATRM 454 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhc-C------CeEEEEeCCCH
Confidence 4689999999 34 366666653 67999999999999999873 4 57999999874
No 330
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=83.68 E-value=3.2 Score=40.88 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=46.6
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
.=|..||-|-|++.+.+.+.--.++.+||+|+..+.-- +++.-..+.++.+|++|++.|
T Consensus 52 ~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~L-Q~L~EAa~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 52 AYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGL-QMLSEAAPGKLRIHHGDVLRF 110 (326)
T ss_pred ceeEEecCCCCchhHHHHhcchhheeeeeeccccChHH-HHHhhcCCcceEEecccccee
Confidence 45889999999999988876446999999999876654 333323456999999999998
No 331
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.62 E-value=11 Score=37.70 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=27.9
Q ss_pred eEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 265 KALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
+|.+||+|. ..++..|.+. +.+|++++.+++.++.+.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~~~~~~~~~ 40 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-GYQLHVTTIGPEVADELLA 40 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHH
Confidence 478999983 4466555543 6799999999988777654
No 332
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.59 E-value=9.4 Score=38.98 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=28.2
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
+|.|||.| |++++..|.+. +.+|+.+..+++.++.-++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~~~~~~i~~ 41 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNHTTFESINT 41 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHH
Confidence 68999999 45577666653 5789999999887765544
No 333
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=83.35 E-value=4.5 Score=41.13 Aligned_cols=124 Identities=17% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCeEEEEeCchh-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGGG-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGgG-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
.++|+++|=-.= +++..|.. ++-+|.+||||+.+++.-.+.-.-..-.+++.++=|-+.-+.+-
T Consensus 153 gK~I~vvGDDDLtsia~aLt~-mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~-------------- 217 (354)
T COG1568 153 GKEIFVVGDDDLTSIALALTG-MPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPED-------------- 217 (354)
T ss_pred CCeEEEEcCchhhHHHHHhcC-CCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHH--------------
Confidence 578999994321 23433332 35799999999999986554321111234667777776654331
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCCh-HHHHHHHHHccCcC---cEEEEEeCCCCchHHHHH
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVR-KDVLLAARLILSDF---GIFVMNVIPPNRSFYDML 417 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~-~efl~~~~~~L~~~---Gilv~N~~~~~~~~~~~v 417 (478)
-..+||+++.| ||+.+.- .-|+..=-..|+.- |.|-+...-.+-.-..++
T Consensus 218 --------------~~~kFDvfiTD------------PpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~ei 271 (354)
T COG1568 218 --------------LKRKFDVFITD------------PPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREI 271 (354)
T ss_pred --------------HHhhCCeeecC------------chhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHH
Confidence 35689999996 3443221 44555555667654 666554433333333444
Q ss_pred HHHHHHhcCc
Q 038592 418 IQEFRDVFQE 427 (478)
Q Consensus 418 ~~~l~~vF~~ 427 (478)
.+.|-.-|..
T Consensus 272 Qr~lIn~~gv 281 (354)
T COG1568 272 QRILINEMGV 281 (354)
T ss_pred HHHHHHhcCe
Confidence 4445555543
No 334
>PRK08507 prephenate dehydrogenase; Validated
Probab=83.27 E-value=8.9 Score=38.24 Aligned_cols=39 Identities=31% Similarity=0.391 Sum_probs=31.4
Q ss_pred eEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~ 303 (478)
+|.+||+| ||+++..|.+.- ..+|.+++.+++-++.+++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~ 43 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE 43 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 68999999 677888877652 4589999999998887764
No 335
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.21 E-value=6.3 Score=39.15 Aligned_cols=98 Identities=24% Similarity=0.274 Sum_probs=70.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.+.+|.||.-+|+.+.++.+.-..+|.+||.--.-+.+ .+..|+|+.++..-=+.++...
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~-----kLR~d~rV~~~E~tN~r~l~~~--------------- 139 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW-----KLRNDPRVIVLERTNVRYLTPE--------------- 139 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH-----hHhcCCcEEEEecCChhhCCHH---------------
Confidence 57899999999999998888756799999976544333 3446899998887777776431
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCC-hHHHHHHHHHccCcCcEEEEEe
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFV-RKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~-~~efl~~~~~~L~~~Gilv~N~ 406 (478)
.-.+..|+|++|+. |. -...|-.+...|+++|.++.=+
T Consensus 140 ------------~~~~~~d~~v~DvS--------------FISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 140 ------------DFTEKPDLIVIDVS--------------FISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ------------HcccCCCeEEEEee--------------hhhHHHHHHHHHHhcCCCceEEEEe
Confidence 12337899999862 11 2557777888888887776544
No 336
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.18 E-value=6.2 Score=40.06 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=27.4
Q ss_pred CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592 263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVAR 302 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~ 302 (478)
.++++|+|.|. ..+++.|+ .++.+|++++.++.-.+.+.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~-~~G~~V~v~~R~~~~~~~~~ 191 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFS-ALGARVFVGARSSADLARIT 191 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHH-HCCCEEEEEeCCHHHHHHHH
Confidence 57999999994 23444444 34789999999987554443
No 337
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=83.12 E-value=1.7 Score=44.47 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=36.5
Q ss_pred CCeEEEEeCchhH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC--CCCCeEEEEc
Q 038592 263 RPKALCVGVGGGA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE--DGEFLQVSVG 318 (478)
Q Consensus 263 ~~~VLvIGlGgG~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~--~d~rl~v~v~ 318 (478)
..++|.||.|+.+ .|....+.++.++++.|||+.-++.|++..... -.++++++..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~ 161 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ 161 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence 5689999999775 354444445899999999999999999876432 2568888755
No 338
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=83.08 E-value=15 Score=35.07 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=32.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
..+|||.|.|+ |.....+.+..+.+|.+++.++.-.+.+++.
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 56899999886 4444445555578999999999988888664
No 339
>PLN02712 arogenate dehydrogenase
Probab=82.87 E-value=12 Score=42.56 Aligned_cols=105 Identities=18% Similarity=0.221 Sum_probs=65.2
Q ss_pred CCCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 262 FRPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 262 ~~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
.+.+|.+||+| ||.+++.|.+ .+.+|.+++.++.. +.|++ +|. . ...|.-+.+.
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~-~G~~V~~~dr~~~~-~~a~~-~Gv------~-~~~~~~el~~-------------- 423 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVK-QGHTVLAYSRSDYS-DEAQK-LGV------S-YFSDADDLCE-------------- 423 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHH-CcCEEEEEECChHH-HHHHH-cCC------e-EeCCHHHHHh--------------
Confidence 35799999999 6778887765 35789999998764 44543 342 1 2334443321
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHH-ccCcCcEEEEEeCCCCchHHHHHH
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARL-ILSDFGIFVMNVIPPNRSFYDMLI 418 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~-~L~~~Gilv~N~~~~~~~~~~~v~ 418 (478)
...|+||+-+ ||. ...+++..+.. .+++ |.+++++.+-... .+
T Consensus 424 ------------------~~aDvVILav-----------P~~--~~~~vi~~l~~~~lk~-g~ivvDv~SvK~~----~~ 467 (667)
T PLN02712 424 ------------------EHPEVILLCT-----------SIL--STEKVLKSLPFQRLKR-STLFVDVLSVKEF----PR 467 (667)
T ss_pred ------------------cCCCEEEECC-----------ChH--HHHHHHHHHHHhcCCC-CcEEEECCCccHH----HH
Confidence 1369999932 222 45677777764 4665 5677788776432 34
Q ss_pred HHHHHhcC
Q 038592 419 QEFRDVFQ 426 (478)
Q Consensus 419 ~~l~~vF~ 426 (478)
+.+.+.++
T Consensus 468 ~~~~~~l~ 475 (667)
T PLN02712 468 NLFLQHLP 475 (667)
T ss_pred HHHHHhcc
Confidence 45555554
No 340
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=82.87 E-value=17 Score=37.52 Aligned_cols=98 Identities=21% Similarity=0.205 Sum_probs=61.4
Q ss_pred CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|..| |.++..|.+..+..+.++=-.++-.+.+++... +.-+...-.|-.+-+++..
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGA---d~vi~y~~~~~~~~v~~~t------------ 207 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGA---DHVINYREEDFVEQVRELT------------ 207 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCC---CEEEcCCcccHHHHHHHHc------------
Confidence 57899999554 567777777777555555555555557777643 2223333445444444421
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
.+..+|+|+-- ...+.+......|+++|.++.--.
T Consensus 208 ---------------~g~gvDvv~D~-----------------vG~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 208 ---------------GGKGVDVVLDT-----------------VGGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred ---------------CCCCceEEEEC-----------------CCHHHHHHHHHHhccCCEEEEEec
Confidence 34569998861 225677778899999999987443
No 341
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=82.61 E-value=3 Score=41.91 Aligned_cols=124 Identities=23% Similarity=0.303 Sum_probs=62.4
Q ss_pred CCeEEEEeCch--hHHH--HHHHhhC--CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 263 RPKALCVGVGG--GALV--SFLRTQL--DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~--~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
..|||-+|.|+ |..| ..|++.+ +.-++-.||.+-|-+ --..+++|-..|.
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vSD------------a~~~~~~Dc~t~~------------ 117 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVSD------------ADQSIVGDCRTYM------------ 117 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B-S------------SSEEEES-GGGEE------------
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhccc------------cCCceeccccccC------------
Confidence 46899999984 4333 3466665 356666676543221 2356778877773
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCC--CCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHH
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARN--GTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFY 414 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~--g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~ 414 (478)
...++|+||.|++++.... |-+.-.+.|+ .-+..-+++.|+-||-+++-+.-.+-
T Consensus 118 -------------------~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF-~yl~~~i~~kLaLGGSvaiKiTE~Sw--- 174 (299)
T PF06460_consen 118 -------------------PPDKFDLIISDMYDGRTKNCDGENNSKEGFF-TYLCGFIKEKLALGGSVAIKITEHSW--- 174 (299)
T ss_dssp -------------------ESS-EEEEEE----TTS-SS-S------THH-HHHHHHHHHHEEEEEEEEEEE-SSS----
T ss_pred -------------------CCCcccEEEEecccccccccccccCCccccH-HHHHHHHHhhhhcCceEEEEeecccc---
Confidence 5788999999999654321 1111123332 33456678899999999987743321
Q ss_pred HHHHHHHHHhcCc--cEEEee
Q 038592 415 DMLIQEFRDVFQE--LYEIDV 433 (478)
Q Consensus 415 ~~v~~~l~~vF~~--v~~~~v 433 (478)
..-+-.|.+.|.. ++...+
T Consensus 175 ~~~Lyel~~~F~~wt~FcT~V 195 (299)
T PF06460_consen 175 NAQLYELMGYFSWWTCFCTAV 195 (299)
T ss_dssp -HHHHHHHTTEEEEEEEEEGG
T ss_pred cHHHHHHHhhcccEEEEeccc
Confidence 1224567788885 344444
No 342
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=82.56 E-value=5.1 Score=40.14 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=26.6
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
+|+|||+| |+.++..|.+. +.+|+.++. ++.++..++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r-~~~~~~~~~ 40 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR-PKRAKALRE 40 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec-HHHHHHHHh
Confidence 69999999 44466666654 578999998 666665554
No 343
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.48 E-value=7 Score=39.51 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=32.2
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
.+|.|||+| |+.++..+... +.+|+.+|.+|+-++.+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~~~~~~ 47 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEELATAGRNR 47 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHH
Confidence 589999999 56666655543 78999999999999987654
No 344
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=82.44 E-value=4.9 Score=44.14 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=32.9
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF 305 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F 305 (478)
-++|.+||+| |+.++..+... +..|+++|.+++.++.++++.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e~l~~~~~~i 50 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAGAAAAARDGI 50 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHH
Confidence 3689999999 55666665543 789999999999999876543
No 345
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=82.36 E-value=14 Score=36.99 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=92.1
Q ss_pred CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEE
Q 038592 285 DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIM 364 (478)
Q Consensus 285 ~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIi 364 (478)
+-++...|+-|.=..+-++.|. .+.+++|+.+||..-+.... .+..+=-+|+
T Consensus 110 qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~L--------------------------PP~erRglVL 161 (279)
T COG2961 110 QDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHL--------------------------PPKERRGLVL 161 (279)
T ss_pred hceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhC--------------------------CCCCcceEEE
Confidence 5699999999999999888887 68899999999999886632 1455667899
Q ss_pred EeCCCCCCCCCCCCCCCCCCh--HHHHHHHHHccC--cCcEEEEEeCCCCchHHHHHHHHHHHh-cCccEEE--eec--c
Q 038592 365 VDLDSGDARNGTSAPPVEFVR--KDVLLAARLILS--DFGIFVMNVIPPNRSFYDMLIQEFRDV-FQELYEI--DVG--N 435 (478)
Q Consensus 365 vDv~s~d~~~g~s~Pp~~f~~--~efl~~~~~~L~--~~Gilv~N~~~~~~~~~~~v~~~l~~v-F~~v~~~--~v~--~ 435 (478)
+| ||-+.-+ ....+.+++.++ ++|+.+++...-+....+.+.+.|++. .+.+..+ .+. .
T Consensus 162 ID------------PPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~kiL~iEL~VrP~~ 229 (279)
T COG2961 162 ID------------PPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIRKILQIELAVRPDS 229 (279)
T ss_pred eC------------CCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCccceeeeEEEecCCC
Confidence 97 3443322 223444444444 479999988877777788888888877 4454333 221 1
Q ss_pred ------cceEEEEEEcCCCCCCcchhhhhhhHHHHHHhc
Q 038592 436 ------EENFVLIATGLSIVSSGSDCENAFGKKLRLLIS 468 (478)
Q Consensus 436 ------~~N~Vl~a~~~~~~~~~~~~~~~~~~~l~~~i~ 468 (478)
..-+|++ +-|. +..+..+..++.|...+.
T Consensus 230 d~~gm~gSGMivI--NPPw--tle~ql~~~LP~L~~~L~ 264 (279)
T COG2961 230 DPRGMNGSGMIVI--NPPW--TLEQQLRAALPWLTTLLA 264 (279)
T ss_pred CCCCccceeEEEE--CCCc--cHHHHHHHHHHHHHHHhc
Confidence 1123333 3333 344556666777766554
No 346
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=82.29 E-value=3.7 Score=46.45 Aligned_cols=72 Identities=11% Similarity=0.156 Sum_probs=49.0
Q ss_pred CCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC-CCchHHHHHHHHHHHhcCccEEEee
Q 038592 356 VDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP-PNRSFYDMLIQEFRDVFQELYEIDV 433 (478)
Q Consensus 356 ~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~-~~~~~~~~v~~~l~~vF~~v~~~~v 433 (478)
.+-++|+|++|+...|... ..-.+...-+.+..+|.++|.+++=... +=...-..++..+...|+.|..+..
T Consensus 412 ~~~~idLiv~DmEV~d~~~------~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~V~l~qT 484 (675)
T PF14314_consen 412 HNLSIDLIVMDMEVRDDSI------IRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKSVELVQT 484 (675)
T ss_pred cCCcccEEEEeceecChHH------HHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCceEEEEC
Confidence 5778999999987665421 1113344445566788999999985533 2122234689999999999987774
No 347
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=81.96 E-value=4.3 Score=39.25 Aligned_cols=102 Identities=23% Similarity=0.258 Sum_probs=63.8
Q ss_pred CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..++||.+|.|.|..+......-...|...|+||-.+...+-.-.. +.-.+.+...|.+-
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a-ngv~i~~~~~d~~g------------------- 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA-NGVSILFTHADLIG------------------- 138 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh-ccceeEEeeccccC-------------------
Confidence 4689999999999877554443346999999998888776543221 22234444444431
Q ss_pred ccccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
....+|+|+. |++=. .+ ..+-+-.++..|...|..++ +..+.
T Consensus 139 --------------~~~~~Dl~LagDlfy~--------~~----~a~~l~~~~~~l~~~g~~vl-vgdp~ 181 (218)
T COG3897 139 --------------SPPAFDLLLAGDLFYN--------HT----EADRLIPWKDRLAEAGAAVL-VGDPG 181 (218)
T ss_pred --------------CCcceeEEEeeceecC--------ch----HHHHHHHHHHHHHhCCCEEE-EeCCC
Confidence 3567999998 33211 11 12233347888888888877 54443
No 348
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=81.92 E-value=19 Score=34.68 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCeEEEEeCchhHHH--HHHHhhCCCEEEEEE--CChHHHHHHHHhcCCCCCCCeEEEEchH
Q 038592 263 RPKALCVGVGGGALV--SFLRTQLDFEVVGVE--MDEVVLRVARQYFGLEDGEFLQVSVGDA 320 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~--~~L~~~~~~~V~~VE--iDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg 320 (478)
.++|||||+|.=+.. +.|.+ .+.+|++|+ +++++.+++++ .+++++.++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~~~~~l~~l~~~-------~~i~~~~~~~ 62 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK-AGAQLRVIAEELESELTLLAEQ-------GGITWLARCF 62 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH-CCCEEEEEcCCCCHHHHHHHHc-------CCEEEEeCCC
Confidence 469999999954433 34443 367888885 45566666533 2566666553
No 349
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.87 E-value=16 Score=37.62 Aligned_cols=45 Identities=18% Similarity=0.193 Sum_probs=34.9
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.+ .|.++..+.+..+.+|.+++.+++-.+.+++-+|.
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa 205 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF 205 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC
Confidence 4689999973 45566666667788999999999989988755674
No 350
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.87 E-value=7.6 Score=39.19 Aligned_cols=42 Identities=24% Similarity=0.094 Sum_probs=30.3
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCE-EEEEECChHHHHHHHHh
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFE-VVGVEMDEVVLRVARQY 304 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~ 304 (478)
..+|||+|+| -|.++..+.+..+.+ |.+++.+++-++.|+.+
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~ 188 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY 188 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc
Confidence 4589999876 355666666666764 77889998888777653
No 351
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=81.81 E-value=7.5 Score=38.62 Aligned_cols=100 Identities=23% Similarity=0.265 Sum_probs=59.6
Q ss_pred HHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCC
Q 038592 276 LVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSD 354 (478)
Q Consensus 276 L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (478)
+++.|++.. ..+|.++|.++..++.|++. |... -...+ .+.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~-----~~~~~-~~~~------------------------------ 43 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIID-----EASTD-IEAV------------------------------ 43 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSS-----EEESH-HHHG------------------------------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCee-----eccCC-HhHh------------------------------
Confidence 456777774 68999999999999999764 5421 11223 3332
Q ss_pred CCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcC----ccEE
Q 038592 355 RVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQ----ELYE 430 (478)
Q Consensus 355 ~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~----~v~~ 430 (478)
..+|+||+-+ |.. ...++++.+...|+++. +++.+.+-..... +.+++..+ .+-.
T Consensus 44 ---~~~Dlvvlav------------P~~-~~~~~l~~~~~~~~~~~-iv~Dv~SvK~~~~----~~~~~~~~~~~~~v~~ 102 (258)
T PF02153_consen 44 ---EDADLVVLAV------------PVS-AIEDVLEEIAPYLKPGA-IVTDVGSVKAPIV----EAMERLLPEGVRFVGG 102 (258)
T ss_dssp ---GCCSEEEE-S-------------HH-HHHHHHHHHHCGS-TTS-EEEE--S-CHHHH----HHHHHHHTSSGEEEEE
T ss_pred ---cCCCEEEEcC------------CHH-HHHHHHHHhhhhcCCCc-EEEEeCCCCHHHH----HHHHHhcCcccceeec
Confidence 2369999932 332 46889999999888764 5567776655544 44444444 4555
Q ss_pred Eee
Q 038592 431 IDV 433 (478)
Q Consensus 431 ~~v 433 (478)
.|+
T Consensus 103 HPM 105 (258)
T PF02153_consen 103 HPM 105 (258)
T ss_dssp EES
T ss_pred CCC
Confidence 665
No 352
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=81.64 E-value=7.9 Score=41.10 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=39.2
Q ss_pred CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592 263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE 322 (478)
Q Consensus 263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~ 322 (478)
+.+++|+|+|. | .+++.|.+ .+.+|++||.||+.++.+++.+ +.+.++.+|+.+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~-~~~~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~ 286 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEK-EGYSVKLIERDPERAEELAEEL-----PNTLVLHGDGTD 286 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHHHHHHHHHHC-----CCCeEEECCCCC
Confidence 57899999973 2 34454443 3679999999999888776643 235788999854
No 353
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=81.39 E-value=21 Score=36.07 Aligned_cols=96 Identities=20% Similarity=0.256 Sum_probs=56.8
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |..+..+.+..+ .+|.+++.++.-.+.++++ |. +.-+.....+....+.+..
T Consensus 167 g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~--~~~v~~~~~~~~~~i~~~~------------ 231 (345)
T cd08286 167 GDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL-GA--THTVNSAKGDAIEQVLELT------------ 231 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh-CC--CceeccccccHHHHHHHHh------------
Confidence 46888876431 223333445567 7899999999988888764 53 2222222234333333321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+|+ |... ....++.+.+.|+++|.++.
T Consensus 232 ---------------~~~~~d~vl-d~~g---------------~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 232 ---------------DGRGVDVVI-EAVG---------------IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred ---------------CCCCCCEEE-ECCC---------------CHHHHHHHHHhccCCcEEEE
Confidence 234599887 3211 13356777889999999874
No 354
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=81.32 E-value=16 Score=39.83 Aligned_cols=101 Identities=8% Similarity=-0.026 Sum_probs=61.3
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+|.+||+| |+.++.-|.+. +.+|++.+.+++.++...+...- ....++ ...|..++++.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~-G~~V~v~dr~~~~~~~l~~~~~~-~g~~i~-~~~s~~e~v~~---------------- 63 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASR-GFKISVYNRTYEKTEEFVKKAKE-GNTRVK-GYHTLEELVNS---------------- 63 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHhhhh-cCCcce-ecCCHHHHHhc----------------
Confidence 79999999 45566666654 67999999999998766543110 011111 23344455432
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR 411 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~ 411 (478)
-.+.|+||+=+- |.. ...++++.+...|++| -++++..+...
T Consensus 64 --------------l~~~d~Iil~v~-----------~~~-~v~~vi~~l~~~L~~g-~iIID~gn~~~ 105 (470)
T PTZ00142 64 --------------LKKPRKVILLIK-----------AGE-AVDETIDNLLPLLEKG-DIIIDGGNEWY 105 (470)
T ss_pred --------------CCCCCEEEEEeC-----------ChH-HHHHHHHHHHhhCCCC-CEEEECCCCCH
Confidence 123587777332 222 3467788888888875 55667766543
No 355
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.16 E-value=18 Score=36.10 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=43.6
Q ss_pred CCceeEEEEeCCCCCCCC---CC--------CCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhc
Q 038592 357 DNKFDVIMVDLDSGDARN---GT--------SAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVF 425 (478)
Q Consensus 357 ~~~yDvIivDv~s~d~~~---g~--------s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF 425 (478)
...||+|++|.-.+...- .+ -.+|. ...+...-.+.|..+..|++|-..+.+.+-+.+...+++..
T Consensus 115 ~~~~~~iliD~P~g~~~~~~~al~~aD~vL~V~~~D---a~s~~~L~q~~l~~~~~~liNq~~~~s~l~~D~~~~~~~~l 191 (243)
T PF06564_consen 115 LGPYDWILIDTPPGPSPYTRQALAAADLVLVVVNPD---AASHARLHQRALPAGHRFLINQYDPASQLQRDLLQVWRQSL 191 (243)
T ss_pred cCCCCEEEEeCCCCCcHHHHHHHHhCCeEEEEeCCC---HHHHHHHHHhcccCCcEEEEeccCccchHHHHHHHHHHHhh
Confidence 467999999986543110 00 00111 12333344456788889999999887777777777777777
Q ss_pred CccE
Q 038592 426 QELY 429 (478)
Q Consensus 426 ~~v~ 429 (478)
+...
T Consensus 192 ~~ll 195 (243)
T PF06564_consen 192 GRLL 195 (243)
T ss_pred cccc
Confidence 6543
No 356
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=81.11 E-value=22 Score=36.03 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=34.7
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.. .|.++..+.+..+.+|.++..+++-.+.+++.+|.
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa 198 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF 198 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Confidence 4699999963 45555556666788999999999999999886675
No 357
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=80.85 E-value=10 Score=38.83 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=30.0
Q ss_pred CCeEEEEeCch-hHHHHHHHhh-C-CCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVGG-GALVSFLRTQ-L-DFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~-~-~~~V~~VEiDp~Vl~vA~~ 303 (478)
..+|||+|+|+ |.++..+.+. . ..+|++++.+++=++.|++
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 46899999764 4444444443 4 4689999999999999876
No 358
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.75 E-value=3.4 Score=38.88 Aligned_cols=110 Identities=15% Similarity=0.217 Sum_probs=59.0
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC-----CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE-----DGEFLQVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~-----~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
+|.|||.| |.+++..+..+ +.+|+.+|.|++.++.++++..-. ...++. .......+.. .+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~--~~~~~~~~~~---------i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLS--QEEADAALAR---------IS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTT--HHHHHHHHHT---------EE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccch--hhhhhhhhhh---------cc
Confidence 58999998 33455555444 899999999999999988775310 000000 0000111110 00
Q ss_pred CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
... +. .... ..|+||=-+ |+.+ ...++|+.+.+.+.|+=+|+.|..+-.
T Consensus 69 ~~~-------dl----~~~~-~adlViEai------------~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~ 118 (180)
T PF02737_consen 69 FTT-------DL----EEAV-DADLVIEAI------------PEDLELKQELFAELDEICPPDTILASNTSSLS 118 (180)
T ss_dssp EES-------SG----GGGC-TESEEEE-S-------------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-
T ss_pred ccc-------CH----HHHh-hhheehhhc------------cccHHHHHHHHHHHHHHhCCCceEEecCCCCC
Confidence 000 00 0112 567777622 3433 458899999999999999999987664
No 359
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=80.52 E-value=14 Score=30.39 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=53.1
Q ss_pred EEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeC
Q 038592 288 VVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDL 367 (478)
Q Consensus 288 V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv 367 (478)
|..||=|+...+..+++|. ..+-..-....|+-+.+..+. ...||+|++|.
T Consensus 1 Ilivd~~~~~~~~l~~~l~-~~~~~~v~~~~~~~~~~~~~~----------------------------~~~~d~iiid~ 51 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLE-RAGYEEVTTASSGEEALELLK----------------------------KHPPDLIIIDL 51 (112)
T ss_dssp EEEEESSHHHHHHHHHHHH-HTTEEEEEEESSHHHHHHHHH----------------------------HSTESEEEEES
T ss_pred cEEEECCHHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHhc----------------------------ccCceEEEEEe
Confidence 5678999999999999987 222112336677777776542 24599999997
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 368 DSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 368 ~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
...+. -..++++.+++.- ++.-+++=..
T Consensus 52 ~~~~~-----------~~~~~~~~i~~~~-~~~~ii~~t~ 79 (112)
T PF00072_consen 52 ELPDG-----------DGLELLEQIRQIN-PSIPIIVVTD 79 (112)
T ss_dssp SSSSS-----------BHHHHHHHHHHHT-TTSEEEEEES
T ss_pred eeccc-----------ccccccccccccc-ccccEEEecC
Confidence 55432 3478899998777 5555554343
No 360
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=80.44 E-value=23 Score=36.20 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=28.5
Q ss_pred CCeEEEEeCch-hH-HHHHHHhhCCCEEEEEECChHH-HHHHHHh
Q 038592 263 RPKALCVGVGG-GA-LVSFLRTQLDFEVVGVEMDEVV-LRVARQY 304 (478)
Q Consensus 263 ~~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEiDp~V-l~vA~~~ 304 (478)
..+|++||.|. |. ++..|...-..+|++++.+++- .+.|+++
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~ 222 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL 222 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc
Confidence 57999999983 33 3444444223689999999874 5677664
No 361
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=80.36 E-value=5.9 Score=43.49 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
-++|.|||+| |..++..+... +..|+++|.+++.++.++++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e~l~~~~~~ 47 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAEALARAIAG 47 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHH
Confidence 4689999999 44566655543 78999999999999876543
No 362
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=80.30 E-value=19 Score=33.12 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=22.1
Q ss_pred CCeEEEEeCchhH--HHHHHHhhCCCEEEEEECChHHHH
Q 038592 263 RPKALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVVLR 299 (478)
Q Consensus 263 ~~~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~Vl~ 299 (478)
.++|||+|+|.=+ .++.|.+ .+.+|++| +|++.+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~-~ga~V~VI--sp~~~~ 48 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD-TGAFVTVV--SPEICK 48 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEE--cCccCH
Confidence 5799999999433 3444443 36788888 455443
No 363
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=79.88 E-value=10 Score=43.27 Aligned_cols=106 Identities=26% Similarity=0.379 Sum_probs=66.5
Q ss_pred CeEEEEeCc--hhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 264 PKALCVGVG--GGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
++|.+||+| |+++++.+.+.- ..+|.+++.+++-++.|+++ |.. +. ...|..+.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~-g~~-~~----~~~~~~~~~---------------- 61 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL-GVI-DR----GEEDLAEAV---------------- 61 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC-CCC-Cc----ccCCHHHHh----------------
Confidence 589999999 566777776542 35899999999988887653 431 00 011211111
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE 420 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~ 420 (478)
...|+||+-+ || . ...+.++.++..+++ +.+++++.+-.... ++.
T Consensus 62 -----------------~~aDvVilav-----------p~-~-~~~~vl~~l~~~~~~-~~ii~d~~svk~~~----~~~ 106 (735)
T PRK14806 62 -----------------SGADVIVLAV-----------PV-L-AMEKVLADLKPLLSE-HAIVTDVGSTKGNV----VDA 106 (735)
T ss_pred -----------------cCCCEEEECC-----------CH-H-HHHHHHHHHHHhcCC-CcEEEEcCCCchHH----HHH
Confidence 2469999822 33 2 347788888888876 56777777664443 445
Q ss_pred HHHhcC
Q 038592 421 FRDVFQ 426 (478)
Q Consensus 421 l~~vF~ 426 (478)
+++.|+
T Consensus 107 l~~~~~ 112 (735)
T PRK14806 107 ARAVFG 112 (735)
T ss_pred HHHhcc
Confidence 555554
No 364
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=79.79 E-value=13 Score=36.60 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCeEEEEeCchhHHHHH--HHhhCCCEEEEE--ECChHHHHHHHHhcCCCCCCCeEEEEc
Q 038592 263 RPKALCVGVGGGALVSF--LRTQLDFEVVGV--EMDEVVLRVARQYFGLEDGEFLQVSVG 318 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~--L~~~~~~~V~~V--EiDp~Vl~vA~~~Fg~~~d~rl~v~v~ 318 (478)
.++|||||+|.=++-+. |.+ .+.+|++| |+++++.+++. .++++++..
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~-~gA~VtVVap~i~~el~~l~~-------~~~i~~~~r 76 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLK-KGCYVYILSKKFSKEFLDLKK-------YGNLKLIKG 76 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCCCHHHHHHHh-------CCCEEEEeC
Confidence 57999999997775532 222 36677777 89999988764 245666654
No 365
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=79.45 E-value=38 Score=31.81 Aligned_cols=59 Identities=12% Similarity=0.113 Sum_probs=33.8
Q ss_pred cHHHHHHHHhhhcccccccccCCCCCeEEEEeCchh----HHHHHHHhhC---CCEEEEEECChHHHHHHHHhcCC
Q 038592 239 YLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGG----ALVSFLRTQL---DFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 239 Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG----~L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
+.+.+-..+.+... .++.+.+.+..+| +++..|...+ +.+|..||.|+.--..+ .+|+.
T Consensus 2 ~~~~l~~~l~~~~~---------~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~-~~~~~ 67 (204)
T TIGR01007 2 YYNAIRTNIQFSGA---------EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMS-GTFKS 67 (204)
T ss_pred hHHHHHHHHhhhcC---------CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHH-HHhCC
Confidence 34555565554321 2566777755544 2333344332 57999999998765544 34543
No 366
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=79.44 E-value=1.8 Score=43.29 Aligned_cols=61 Identities=18% Similarity=0.096 Sum_probs=47.3
Q ss_pred CCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHH
Q 038592 311 EFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLL 390 (478)
Q Consensus 311 ~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~ 390 (478)
-.+.+++||+.+.+.+... .-+++|+.+.|.|++.- .| .+.+.+++.
T Consensus 146 ~~l~l~~gd~~~~~p~~~~--------------------------~~~~~dAwflDgFsP~k------NP-~mW~~e~l~ 192 (252)
T COG4121 146 LLLGLVIGDAGDGIPPVPR--------------------------RRPGTDAWFLDGFRPVK------NP-EMWEDELLN 192 (252)
T ss_pred heeeeeeeehhhcCCcccc--------------------------cccCccEEecCCccccC------Ch-hhccHHHHH
Confidence 4678899999888754211 11179999999998543 24 789999999
Q ss_pred HHHHccCcCcEEEE
Q 038592 391 AARLILSDFGIFVM 404 (478)
Q Consensus 391 ~~~~~L~~~Gilv~ 404 (478)
.++++..+||.++.
T Consensus 193 ~~a~~~~~~~~l~t 206 (252)
T COG4121 193 LMARIPYRDPTLAT 206 (252)
T ss_pred HHHhhcCCCCceec
Confidence 99999999999883
No 367
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=79.17 E-value=35 Score=35.09 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.| .|.++..+.+..+. +|.+++.+++-.+.|++ +|.
T Consensus 188 g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~-~Ga 233 (369)
T cd08301 188 GSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK-FGV 233 (369)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC
Confidence 4689999865 23344445555676 89999999999999976 564
No 368
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=79.15 E-value=25 Score=35.07 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=34.4
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.. .|..+..+.+..+.+|.++.-++.-.+.+++.+|.
T Consensus 146 ~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~ 192 (329)
T cd05288 146 GETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGF 192 (329)
T ss_pred CCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCC
Confidence 4689999853 45555556666688999999999999999886774
No 369
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=79.15 E-value=13 Score=37.57 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=29.6
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
+|.+||+| |+.++..|.+. +.+|++++.+++-++...+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V~v~d~~~~~~~~~~~ 42 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-GHQLQVFDVNPQAVDALVD 42 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-CCeEEEEcCCHHHHHHHHH
Confidence 79999999 56677766654 5799999999988776544
No 370
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.01 E-value=8.5 Score=43.15 Aligned_cols=53 Identities=28% Similarity=0.543 Sum_probs=40.9
Q ss_pred CCeEEEEeCc-hh-HHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVG-GG-ALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlG-gG-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
..+|+|+|.| -| .+++.|.++ +.+++++|.||+.++.++++ | .+++.||+-+-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~~v~~~~~~-g------~~v~~GDat~~ 454 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDISAVNLMRKY-G------YKVYYGDATQL 454 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHhC-C------CeEEEeeCCCH
Confidence 3589999998 33 356666543 67999999999999999773 4 57899999863
No 371
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=78.68 E-value=37 Score=37.11 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=28.9
Q ss_pred CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
.++|+|+|.|. | .+++.++ .++++|.++|.||.....|..
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~-a~Ga~ViV~e~dp~~a~~A~~ 295 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALR-GFGARVVVTEIDPICALQAAM 295 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCchhHHHHHh
Confidence 57999999994 3 2444443 468899999999987655544
No 372
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=78.68 E-value=11 Score=35.20 Aligned_cols=91 Identities=22% Similarity=0.390 Sum_probs=54.9
Q ss_pred CCeEEEEeCchhHHHHHHHh--hCCCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRT--QLDFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~--~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+|++||+=.-. ..|.+ ..+.++...|+|..--....+.|- +.-+ ...++-+.
T Consensus 26 ~~~iaclstPsl~--~~l~~~~~~~~~~~Lle~D~RF~~~~~~~F~fyD~~--------~p~~~~~~------------- 82 (162)
T PF10237_consen 26 DTRIACLSTPSLY--EALKKESKPRIQSFLLEYDRRFEQFGGDEFVFYDYN--------EPEELPEE------------- 82 (162)
T ss_pred CCEEEEEeCcHHH--HHHHhhcCCCccEEEEeecchHHhcCCcceEECCCC--------Chhhhhhh-------------
Confidence 4689999876443 44555 246799999999876654433111 1100 11122111
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH----HHHHHccCcCcEEEEEe
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL----LAARLILSDFGIFVMNV 406 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl----~~~~~~L~~~Gilv~N~ 406 (478)
-..+||+|++| || |++++.+ +.++-++++++-+++-.
T Consensus 83 ----------------l~~~~d~vv~D------------PP--Fl~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 83 ----------------LKGKFDVVVID------------PP--FLSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred ----------------cCCCceEEEEC------------CC--CCCHHHHHHHHHHHHHHhCccceEEEec
Confidence 24589999997 34 4777777 66666778877666433
No 373
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=78.68 E-value=15 Score=37.99 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=28.5
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
+.+|.|||.| |++++..|.+. + .++.+-.+++.++..++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~-g-~v~l~~~~~~~~~~i~~ 47 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR-G-PTLQWVRSAETADDIND 47 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-C-CEEEEeCCHHHHHHHHh
Confidence 5689999999 44566666654 3 57777799998877664
No 374
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=78.62 E-value=30 Score=37.66 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=59.5
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+|.+||+| |+.+++-|.+. +.+|.+.+.+++.++...+.+.- +..+. ...+..++++.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G~~V~v~drt~~~~~~l~~~~~~--g~~~~-~~~s~~e~v~~---------------- 60 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-GFTVSVYNRTPEKTDEFLAEHAK--GKKIV-GAYSIEEFVQS---------------- 60 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHhhccC--CCCce-ecCCHHHHHhh----------------
Confidence 37789999 55666666554 67999999999988876653210 11121 12233344322
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
-.+.|+||+=+-+ .. ...+++..+...|++| -++++..+..
T Consensus 61 --------------l~~~dvIil~v~~-----------~~-~v~~Vi~~l~~~L~~g-~iIID~gns~ 101 (467)
T TIGR00873 61 --------------LERPRKIMLMVKA-----------GA-PVDAVINQLLPLLEKG-DIIIDGGNSH 101 (467)
T ss_pred --------------cCCCCEEEEECCC-----------cH-HHHHHHHHHHhhCCCC-CEEEECCCcC
Confidence 1246888884422 11 3366778888888875 5567776544
No 375
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=78.60 E-value=32 Score=41.20 Aligned_cols=58 Identities=16% Similarity=0.185 Sum_probs=37.6
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCE-------------EEEEECChHHHHHHHHhc-CCCCCCCeEEEEchHHHH
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFE-------------VVGVEMDEVVLRVARQYF-GLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~-------------V~~VEiDp~Vl~vA~~~F-g~~~d~rl~v~v~Dg~~~ 323 (478)
.++|+|||+| |...+..|.+..+.+ |+++|++++-.+.+.+.+ +. ..+.+-+.|--+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~---~~v~lDv~D~e~L 642 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA---EAVQLDVSDSESL 642 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC---ceEEeecCCHHHH
Confidence 6799999999 455777777765544 999999987766544432 21 2244445565444
No 376
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=78.52 E-value=9 Score=34.97 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=64.6
Q ss_pred eEEEEeCchhHHHH--HHHhhCCCEEEEEECChHHHHHHHHhcC----CC---CCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592 265 KALCVGVGGGALVS--FLRTQLDFEVVGVEMDEVVLRVARQYFG----LE---DGEFLQVSVGDAIEFLEKLARQIVGKN 335 (478)
Q Consensus 265 ~VLvIGlGgG~L~~--~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg----~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~ 335 (478)
+|.|||+|.++.+. .|.. -+.+|+....|++.++.-++.-. ++ -.+++++ ..|.-+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~---------- 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALE---------- 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHT----------
T ss_pred CEEEECcCHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhC----------
Confidence 68999999776543 3332 25799999999988876554321 11 1234543 456555542
Q ss_pred CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC-CchHH
Q 038592 336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP-NRSFY 414 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~-~~~~~ 414 (478)
.-|+|++=+ |.. .-+++++.++..|++ |..++++..- .....
T Consensus 69 -----------------------~ad~Iiiav------------Ps~-~~~~~~~~l~~~l~~-~~~ii~~~KG~~~~~~ 111 (157)
T PF01210_consen 69 -----------------------DADIIIIAV------------PSQ-AHREVLEQLAPYLKK-GQIIISATKGFEPGTL 111 (157)
T ss_dssp -----------------------T-SEEEE-S-------------GG-GHHHHHHHHTTTSHT-T-EEEETS-SEETTEE
T ss_pred -----------------------cccEEEecc------------cHH-HHHHHHHHHhhccCC-CCEEEEecCCcccCCC
Confidence 258999932 333 458899999999955 5555555422 11111
Q ss_pred HHHHHHHHHhcCc
Q 038592 415 DMLIQEFRDVFQE 427 (478)
Q Consensus 415 ~~v~~~l~~vF~~ 427 (478)
..+-+.+.+.++.
T Consensus 112 ~~~~~~i~~~~~~ 124 (157)
T PF01210_consen 112 LLLSEVIEEILPI 124 (157)
T ss_dssp EEHHHHHHHHHSS
T ss_pred ccHHHHHHHHhhh
Confidence 2233445555653
No 377
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=78.29 E-value=20 Score=36.53 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.| .|.++..+.+..+.+|.+++.+++-.+.|++ +|.
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~-~Ga 210 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA-LGA 210 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-hCC
Confidence 4689999965 3444455555567899999999999999987 453
No 378
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.17 E-value=5.3 Score=44.18 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=40.4
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
.+++|+|+| |-.+++.|.+. +.++++||.|++.++.++++ + .+++++|+.+-
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~~~~~~~~~-g------~~~i~GD~~~~ 471 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRTRVDELRER-G------IRAVLGNAANE 471 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHC-C------CeEEEcCCCCH
Confidence 578999998 33466666543 57899999999999999864 3 67999999873
No 379
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=78.11 E-value=7.8 Score=42.42 Aligned_cols=127 Identities=19% Similarity=0.131 Sum_probs=81.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.+-++.+-+|+|+....+.+. -.+|.+||++|.-++-|++.-....-.+.++|+|-+.+.+..+-..
T Consensus 384 ~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~------------ 450 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTP------------ 450 (534)
T ss_pred CcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhccc------------
Confidence 467888999999988877764 3699999999999999998876655678999999777765443210
Q ss_pred cccCCCccCCCCCCCCcee-EEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFD-VIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yD-vIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l 421 (478)
.-..=+ +.|+| ||-.=+...|++.++..-++.=++. +.|.-....+.++..+
T Consensus 451 -------------~~~~~~~v~iiD------------PpR~Glh~~~ik~l~~~~~~~rlvy--vSCn~~t~ar~v~~lc 503 (534)
T KOG2187|consen 451 -------------CCDSETLVAIID------------PPRKGLHMKVIKALRAYKNPRRLVY--VSCNPHTAARNVIDLC 503 (534)
T ss_pred -------------CCCCCceEEEEC------------CCcccccHHHHHHHHhccCccceEE--EEcCHHHhhhhHHHhh
Confidence 111234 55554 2333356778888877665543333 2222122234456666
Q ss_pred HHhcCccE
Q 038592 422 RDVFQELY 429 (478)
Q Consensus 422 ~~vF~~v~ 429 (478)
+..+.+.+
T Consensus 504 ~~~~~~~~ 511 (534)
T KOG2187|consen 504 SSPKYRLK 511 (534)
T ss_pred cCcccccc
Confidence 66665443
No 380
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=77.44 E-value=19 Score=39.32 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=29.0
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVA 301 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA 301 (478)
.+|.+||+| |++++..+... +.+|++.|.+++-++..
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~~~~~~~ 43 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-GIDVAVFDPHPEAERII 43 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHH
Confidence 479999999 56666666544 67999999999987654
No 381
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=77.42 E-value=27 Score=36.90 Aligned_cols=126 Identities=22% Similarity=0.194 Sum_probs=83.2
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-C----CEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-D----FEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~----~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
..+||.+..--|+=+..|.+.. . ..|.+=|.|+.-+..-+.-.+....+.+.+.-.|+..|=....+
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-------- 227 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-------- 227 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc--------
Confidence 4699999999776554455542 2 38999999999888777666666677788877777766211000
Q ss_pred CCCcccccCCCccCCCCCCCCceeEEEEeCCC-CCCCCCCCCC--------------CCCCChHHHHHHHHHccCcCcEE
Q 038592 338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDS-GDARNGTSAP--------------PVEFVRKDVLLAARLILSDFGIF 402 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s-~d~~~g~s~P--------------p~~f~~~efl~~~~~~L~~~Gil 402 (478)
+..+.....||=|++|+-. +|.+ +--- -.+-++...|....++|++||.+
T Consensus 228 -------------~~~~~~~~~fDrVLvDVPCS~Dgt--~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~l 292 (375)
T KOG2198|consen 228 -------------DGNDKEQLKFDRVLVDVPCSGDGT--LRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRL 292 (375)
T ss_pred -------------cCchhhhhhcceeEEecccCCCcc--cccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEE
Confidence 0001245679999999954 4422 1100 11225567888889999999999
Q ss_pred EEEeCCCCc
Q 038592 403 VMNVIPPNR 411 (478)
Q Consensus 403 v~N~~~~~~ 411 (478)
|.-+.+-++
T Consensus 293 VYSTCSLnp 301 (375)
T KOG2198|consen 293 VYSTCSLNP 301 (375)
T ss_pred EEeccCCCc
Confidence 988766543
No 382
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=77.37 E-value=3.1 Score=37.18 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=54.1
Q ss_pred EEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHh-cCCCC-CCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 266 ALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQY-FGLED-GEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 266 VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~-Fg~~~-d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
|+|+|.| |..++..|++ .+.+|+.+.-.+ -++.-++. +-+.. +..-.+...........
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--------------- 63 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSA--------------- 63 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGH---------------
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchh---------------
Confidence 6899999 3445555555 578999999998 44443322 21111 11111111110100000
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....||+||+-+ ..+..++.++.++..++++..+++
T Consensus 64 --------------~~~~~D~viv~v-------------Ka~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 64 --------------DAGPYDLVIVAV-------------KAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp --------------HHSTESEEEE-S-------------SGGGHHHHHHHHCTGEETTEEEEE
T ss_pred --------------ccCCCcEEEEEe-------------cccchHHHHHHHhhccCCCcEEEE
Confidence 246799999932 234568899999999999876653
No 383
>PLN02827 Alcohol dehydrogenase-like
Probab=76.69 E-value=24 Score=36.75 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=31.7
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+..+. .|.+++.++.-.+.|++ +|.
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~-lGa 239 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT-FGV 239 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-cCC
Confidence 56999998652 3344445555676 68899999999999966 464
No 384
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=76.33 E-value=28 Score=35.43 Aligned_cols=96 Identities=23% Similarity=0.177 Sum_probs=57.6
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |.++..+.+..+. +|.++.-+++-.+.++++ |. +.-+.....|..+.+.+..
T Consensus 173 g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~-ga--~~~i~~~~~~~~~~l~~~~------------ 237 (351)
T cd08233 173 GDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL-GA--TIVLDPTEVDVVAEVRKLT------------ 237 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-CC--CEEECCCccCHHHHHHHHh------------
Confidence 46899997542 2333344445577 899999999999999774 53 2112222234444443321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+++--+ + ....++.+.+.|+++|.++.
T Consensus 238 ---------------~~~~~d~vid~~--g--------------~~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 238 ---------------GGGGVDVSFDCA--G--------------VQATLDTAIDALRPRGTAVN 270 (351)
T ss_pred ---------------CCCCCCEEEECC--C--------------CHHHHHHHHHhccCCCEEEE
Confidence 233489887611 1 12356777888999998875
No 385
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=76.28 E-value=32 Score=35.61 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=33.6
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+..+. +|.+++.+++-.+.|++ +|.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~-~Ga 231 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK-LGA 231 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-hCC
Confidence 46899998753 4455556666777 89999999999999976 564
No 386
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=76.15 E-value=48 Score=35.16 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=22.0
Q ss_pred CCCCeEEEEe---CchhH--HHHHHHhh---CCCEEEEEEC-ChHH
Q 038592 261 GFRPKALCVG---VGGGA--LVSFLRTQ---LDFEVVGVEM-DEVV 297 (478)
Q Consensus 261 g~~~~VLvIG---lGgG~--L~~~L~~~---~~~~V~~VEi-Dp~V 297 (478)
+.+.+|+.++ +|.|- ++.-|... .+.+|-+||+ ||.-
T Consensus 103 ~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ~ 148 (388)
T PRK13705 103 DVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG 148 (388)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCCC
Confidence 3456777776 44452 23333332 2679999996 9853
No 387
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=75.91 E-value=4.2 Score=40.62 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=41.3
Q ss_pred CCCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592 262 FRPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE 322 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~ 322 (478)
.|.+|+.||||.-=++-...... +..+.+.|||..+++.-..++... ..+.++.+.|-..
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l-~~~~~~~v~Dl~~ 165 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL-GVPHDARVRDLLS 165 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT-T-CEEEEEE-TTT
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh-CCCcceeEeeeec
Confidence 47899999999886664433333 589999999999999999887643 3557777776543
No 388
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=75.80 E-value=5.7 Score=38.70 Aligned_cols=113 Identities=18% Similarity=0.253 Sum_probs=74.3
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcC-CC------CCCCeEEEEchHHHHHHHHHhhhcCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFG-LE------DGEFLQVSVGDAIEFLEKLARQIVGK 334 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg-~~------~d~rl~v~v~Dg~~~l~~~~~~~~~~ 334 (478)
......||||-|+|.+.|.-.+ +.-|.+.||--.|-+..++... +. .-+++.|...++..|+-+.-.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~----- 135 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE----- 135 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh-----
Confidence 4678999999999999998876 6899999999998886654331 10 136788999999999877532
Q ss_pred CCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 335 NPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
++++. =+.++. .|+.---.--+..+.+...+..+.-.|++||++..
T Consensus 136 -----------kgqLs---------kmff~f----pdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 136 -----------KGQLS---------KMFFLF----PDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred -----------hcccc---------cceeec----CChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 22110 111111 11100000002345678888999999999998874
No 389
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=75.39 E-value=36 Score=35.09 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.| .|.++..+.+..+. +|.+++.+++-.+.|++ +|.
T Consensus 187 g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~-lGa 232 (368)
T cd08300 187 GSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK-FGA 232 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC
Confidence 5689999865 23444555556677 79999999999999965 664
No 390
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=75.22 E-value=2.3 Score=46.33 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=27.7
Q ss_pred chhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhh
Q 038592 236 VHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQ 283 (478)
Q Consensus 236 ~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~ 283 (478)
+..|...|...+.+... .|.-+.+|.+|+|.|+.+.+|..+
T Consensus 98 a~~Yid~i~~~~~~~~~-------~g~iR~~LDvGcG~aSF~a~l~~r 138 (506)
T PF03141_consen 98 ADHYIDQIAEMIPLIKW-------GGGIRTALDVGCGVASFGAYLLER 138 (506)
T ss_pred HHHHHHHHHHHhhcccc-------CCceEEEEeccceeehhHHHHhhC
Confidence 45677666555444211 133567899999999999888765
No 391
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=75.17 E-value=10 Score=39.45 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCeEEEEeCch-h-HHHHHHHhhCCC-EEEEEECCh
Q 038592 263 RPKALCVGVGG-G-ALVSFLRTQLDF-EVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIGlGg-G-~L~~~L~~~~~~-~V~~VEiDp 295 (478)
..+|||||+|+ | .++..|... ++ +++.||-|.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 46899999994 3 345555443 54 999999885
No 392
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=75.15 E-value=29 Score=34.90 Aligned_cols=96 Identities=23% Similarity=0.270 Sum_probs=59.5
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCc
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGA 341 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~ 341 (478)
..+|||.|.|+ |..+..+.+..+.+|.++.-+++-.+.+++ ++. +.-+.....+..+.+.+..
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~-~g~--~~v~~~~~~~~~~~l~~~~------------- 223 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE-LGA--DDTINVGDEDVAARLRELT------------- 223 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH-hCC--CEEecCcccCHHHHHHHHh-------------
Confidence 46899997653 445555555668899999999999998865 452 2112222223333343321
Q ss_pred ccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 342 CSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
....+|+|+--+. ....+..+.+.|+++|.++.
T Consensus 224 --------------~~~~vd~vld~~g----------------~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 224 --------------DGEGADVVIDATG----------------NPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred --------------CCCCCCEEEECCC----------------CHHHHHHHHHHHhcCCEEEE
Confidence 2345888876221 13467778889999998874
No 393
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=74.76 E-value=9.7 Score=34.76 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=62.3
Q ss_pred EEEEEECChHHHHHHHHhcCCC-CCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEE
Q 038592 287 EVVGVEMDEVVLRVARQYFGLE-DGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMV 365 (478)
Q Consensus 287 ~V~~VEiDp~Vl~vA~~~Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIiv 365 (478)
+|.+.||-++.++.+++.+.-. ..+|++++.+.=.. +.+.. ...+.|++|.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~-l~~~i---------------------------~~~~v~~~iF 52 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN-LDEYI---------------------------PEGPVDAAIF 52 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG-GGGT-----------------------------S--EEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH-HHhhC---------------------------ccCCcCEEEE
Confidence 5889999999999999877422 23478887755443 32211 1247999999
Q ss_pred eCC---CCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCc---hHHHHHHHHHHHh
Q 038592 366 DLD---SGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNR---SFYDMLIQEFRDV 424 (478)
Q Consensus 366 Dv~---s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~---~~~~~v~~~l~~v 424 (478)
.+- .+|.. +..-| =.+...++.+.++|++||++++-+..-++ +-.+.+.+.+++.
T Consensus 53 NLGYLPggDk~--i~T~~--~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 53 NLGYLPGGDKS--ITTKP--ETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp EESB-CTS-TT--SB--H--HHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS
T ss_pred ECCcCCCCCCC--CCcCc--HHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 762 22221 11111 14677889999999999999987766543 3344555555443
No 394
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=74.74 E-value=34 Score=35.27 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=57.3
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEc--hHHHHHHHHHhhhcCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVG--DAIEFLEKLARQIVGKNPDS 338 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~--Dg~~~l~~~~~~~~~~~~~~ 338 (478)
..+|||.|.|+ |.++..+.+..+. .|.+++.+++-.+.+++ +|.. .-+..... |..+.+.+.
T Consensus 184 g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~~--~~v~~~~~~~~~~~~l~~~----------- 249 (365)
T cd05279 184 GSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQ-LGAT--ECINPRDQDKPIVEVLTEM----------- 249 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCCC--eecccccccchHHHHHHHH-----------
Confidence 46999987652 3344445555666 58899999999999965 6642 22222222 333444332
Q ss_pred CCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccC-cCcEEEE
Q 038592 339 FGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILS-DFGIFVM 404 (478)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~-~~Gilv~ 404 (478)
....+|+|+ |.. +. ...+..+.+.|+ ++|.++.
T Consensus 250 -----------------~~~~~d~vi-d~~-g~--------------~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 250 -----------------TDGGVDYAF-EVI-GS--------------ADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred -----------------hCCCCcEEE-ECC-CC--------------HHHHHHHHHHhccCCCEEEE
Confidence 124589887 431 11 346667788888 9998875
No 395
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=74.48 E-value=32 Score=34.50 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCeEEEEeCc-hhHHHHHHHhh-CCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQ-LDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~-~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.| .|.++..+.+. .+.+|.++.-+++-.+.+++ +|.
T Consensus 163 g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~ 208 (338)
T PRK09422 163 GQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGA 208 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCC
Confidence 4699999954 23344445554 47899999999999999955 564
No 396
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=74.41 E-value=40 Score=34.74 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=32.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+. +|.+++.+++-.+.|++ +|.
T Consensus 185 g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~-~ga 230 (365)
T cd08277 185 GSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE-FGA 230 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC
Confidence 46999998652 3344445556677 79999999999999966 564
No 397
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=74.19 E-value=56 Score=35.68 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=30.6
Q ss_pred CeEEEEeCchhHHHHH--HHhh-CCCEEEEEECChHHHHHHHHh
Q 038592 264 PKALCVGVGGGALVSF--LRTQ-LDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~--L~~~-~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
.+|.|||+|..+++.. |.+. .+.+|++||+|++.++.-++-
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g 45 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSD 45 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcC
Confidence 3799999996655543 4443 257899999999999887653
No 398
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=74.17 E-value=34 Score=35.41 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=25.7
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHH
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVV 297 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~V 297 (478)
..+|.|||+| |..++..|. .++.+|.+++.++..
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~-~~G~~V~~~d~~~~~ 181 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNK 181 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHH-hCCCEEEEEeCChhH
Confidence 4589999999 445666665 368899999988753
No 399
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=74.08 E-value=27 Score=36.50 Aligned_cols=114 Identities=13% Similarity=0.165 Sum_probs=62.2
Q ss_pred eEEEEeCchhH--HHHHHHhh-------CCCEEEEEEC-----ChHHHHHHHH------hc-CCCCCCCeEEEEchHHHH
Q 038592 265 KALCVGVGGGA--LVSFLRTQ-------LDFEVVGVEM-----DEVVLRVARQ------YF-GLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 265 ~VLvIGlGgG~--L~~~L~~~-------~~~~V~~VEi-----Dp~Vl~vA~~------~F-g~~~d~rl~v~v~Dg~~~ 323 (478)
+|.|||.|..+ ++..|... ++.+|..... ++.+.+.-.+ |+ ++...++++. ..|..+.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a-t~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA-VPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE-ECCHHHH
Confidence 58899999665 44444432 1257777777 6677666543 22 2222234444 3454444
Q ss_pred HHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEE
Q 038592 324 LEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFV 403 (478)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv 403 (478)
++ .-|+|++=+ |.. .-+++++.++..|++ +.++
T Consensus 80 l~---------------------------------~ADiIIlAV------------Ps~-~i~~vl~~l~~~l~~-~~~i 112 (342)
T TIGR03376 80 AK---------------------------------GADILVFVI------------PHQ-FLEGICKQLKGHVKP-NARA 112 (342)
T ss_pred Hh---------------------------------cCCEEEEEC------------ChH-HHHHHHHHHHhhcCC-CCEE
Confidence 32 247888832 332 346788999988876 5556
Q ss_pred EEeCCC-Cch--HHHHHHHHHHHhcC
Q 038592 404 MNVIPP-NRS--FYDMLIQEFRDVFQ 426 (478)
Q Consensus 404 ~N~~~~-~~~--~~~~v~~~l~~vF~ 426 (478)
+++.-- ..+ -...+-+.+++.|+
T Consensus 113 Vs~tKGie~~~~~~~~~se~i~e~l~ 138 (342)
T TIGR03376 113 ISCIKGLEVSKDGVKLLSDIIEEELG 138 (342)
T ss_pred EEEeCCcccCCCcCccHHHHHHHHhC
Confidence 665321 111 22334445556664
No 400
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=73.95 E-value=11 Score=38.74 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=60.2
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
+|+|+|.| ||.++..|++.. ..|+.+=-++. ++.-++. | +.+...++ ++...... +
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~-~~~l~~~-G------L~i~~~~~-~~~~~~~~---------~--- 59 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR-LEALKKK-G------LRIEDEGG-NFTTPVVA---------A--- 59 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH-HHHHHhC-C------eEEecCCC-cccccccc---------c---
Confidence 79999999 566777777764 67777777776 4444443 4 44444444 11100000 0
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
........+|+||+.+- ...+.+.+..++..++++-.+++
T Consensus 60 ---------~~~~~~~~~Dlviv~vK-------------a~q~~~al~~l~~~~~~~t~vl~ 99 (307)
T COG1893 60 ---------TDAEALGPADLVIVTVK-------------AYQLEEALPSLAPLLGPNTVVLF 99 (307)
T ss_pred ---------cChhhcCCCCEEEEEec-------------cccHHHHHHHhhhcCCCCcEEEE
Confidence 00113457999999643 33568999999999999886664
No 401
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=73.56 E-value=15 Score=35.09 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=22.8
Q ss_pred CCeEEEEeCch-hH-HHHHHHhhCC-CEEEEEECCh
Q 038592 263 RPKALCVGVGG-GA-LVSFLRTQLD-FEVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIGlGg-G~-L~~~L~~~~~-~~V~~VEiDp 295 (478)
..+||++|+|| |+ ++..|... + .+++.+|-|.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 47999999995 43 44555443 5 4999999884
No 402
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.54 E-value=35 Score=34.43 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=31.4
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.| .|..+..+.+..+.+|.+++.+++-.+.+++ +|.
T Consensus 164 ~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~ 208 (333)
T cd08296 164 GDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGA 208 (333)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCC
Confidence 4689999944 2333344455567899999999999999965 564
No 403
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=73.49 E-value=11 Score=38.47 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=25.1
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHH
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVV 297 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~V 297 (478)
.+|.|||+| |+.++..|.+. +.+|++++.++..
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~~~ 37 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-GADVTLIGRARIG 37 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-CCcEEEEecHHHH
Confidence 479999999 55666666654 6789999987754
No 404
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.45 E-value=32 Score=36.53 Aligned_cols=51 Identities=27% Similarity=0.382 Sum_probs=36.2
Q ss_pred eEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE 322 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~ 322 (478)
+|+++|+| |-.++..|.+ .+.+|.++|.|++-++.+++.++ ++++.+|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~~~~~~~~~~~~------~~~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDEERLRRLQDRLD------VRTVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCHHHHHHHHhhcC------EEEEEeCCCC
Confidence 68999886 2234444433 26799999999998887765433 6788888865
No 405
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.40 E-value=39 Score=35.99 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=37.7
Q ss_pred CeEEEEeCch-hH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH
Q 038592 264 PKALCVGVGG-GA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF 323 (478)
Q Consensus 264 ~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~ 323 (478)
.+||+||+|+ |. .+.-|.+.-+.+|++.+-+++-.+.+....+ ++++.+.=|+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccCh
Confidence 5899999973 33 3333344334899999999888877766643 3666666666554
No 406
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=73.07 E-value=3.7 Score=40.55 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=35.5
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-C--------CEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-D--------FEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~--------~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
+.+|+.+|.|.|.|+.-+.+.+ . .++..||++|.+.+..++.+.-
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 5799999999999998777653 1 4899999999999999888753
No 407
>PLN02688 pyrroline-5-carboxylate reductase
Probab=73.00 E-value=41 Score=33.04 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=29.2
Q ss_pred eEEEEeCc--hhHHHHHHHhhC---CCEEEEE-ECChHHHHHHHH
Q 038592 265 KALCVGVG--GGALVSFLRTQL---DFEVVGV-EMDEVVLRVARQ 303 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~---~~~V~~V-EiDp~Vl~vA~~ 303 (478)
+|.+||+| |++++.-|.+.- ..+|.++ +.+++..+.+.+
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~ 46 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS 46 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH
Confidence 68999999 567777776541 2388888 999988777655
No 408
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.94 E-value=40 Score=33.87 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=55.5
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |..+..+.+..+. .|.+++.++.-.+.++++ |. +.-+.....+..+.+.+..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~-g~--~~vi~~~~~~~~~~i~~~~------------ 232 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA-GA--TDIINPKNGDIVEQILELT------------ 232 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh-CC--cEEEcCCcchHHHHHHHHc------------
Confidence 46888855431 3333334444564 889999999888888764 42 2112222233334443321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
.+..+|+|+- .-. ....+..+.+.|+++|.++.
T Consensus 233 ---------------~~~~~d~vld-~~g---------------~~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 233 ---------------GGRGVDCVIE-AVG---------------FEETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred ---------------CCCCCcEEEE-ccC---------------CHHHHHHHHHHhhcCCEEEE
Confidence 2345898774 211 12578888899999998874
No 409
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=72.61 E-value=36 Score=33.05 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|. +.|.....+.+..+.+|.++..+++-.+.+++ +|.
T Consensus 137 g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~ 182 (320)
T cd05286 137 GDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA-AGA 182 (320)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH-CCC
Confidence 468999995 34555556666678899999999999998866 564
No 410
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.12 E-value=41 Score=34.75 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=28.0
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHH-HHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVL-RVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl-~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+..+.+|.+++.++.-. +.+++ +|.
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~-~Ga 229 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR-LGA 229 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh-CCC
Confidence 45899987652 4455555566678888888776543 44443 564
No 411
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.57 E-value=32 Score=34.50 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=32.3
Q ss_pred CeEEEEeCc--hhHHHHHHHhhC---CCEEEEEECChHHHHHHHHhcC
Q 038592 264 PKALCVGVG--GGALVSFLRTQL---DFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~---~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
.+|.+||+| |++++..|.+.- ..+|.+.+.+++-++.+.+-+|
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g 50 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYG 50 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcC
Confidence 479999999 777888777642 3479999999988776655344
No 412
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=71.54 E-value=3.5 Score=40.23 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=57.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
...|..+|||.+.|+..+.+ ...|..-|+-. .+++ |+..|....
T Consensus 73 ~~viaD~GCGdA~la~~~~~--~~~V~SfDLva-------------~n~~--Vtacdia~v------------------- 116 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA-------------PNPR--VTACDIANV------------------- 116 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-----EEEEESS--------------SSTT--EEES-TTS--------------------
T ss_pred CEEEEECCCchHHHHHhccc--CceEEEeeccC-------------CCCC--EEEecCccC-------------------
Confidence 35789999999999965542 24566555422 1233 566665322
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCCCchHHHHHHHHH
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPPNRSFYDMLIQEF 421 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~~~~~~~v~~~l 421 (478)
+-++...|+++.-+-= | .. --.+|+..+.+.|++||.|.+ -+.+|-.. .+..++.+
T Consensus 117 -----------PL~~~svDv~VfcLSL------M---GT--n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~-~~~F~~~~ 173 (219)
T PF05148_consen 117 -----------PLEDESVDVAVFCLSL------M---GT--NWPDFIREANRVLKPGGILKIAEVKSRFEN-VKQFIKAL 173 (219)
T ss_dssp -----------S--TT-EEEEEEES------------SS---HHHHHHHHHHHEEEEEEEEEEEEGGG-S--HHHHHHHH
T ss_pred -----------cCCCCceeEEEEEhhh------h---CC--CcHHHHHHHHheeccCcEEEEEEecccCcC-HHHHHHHH
Confidence 2356789999986521 1 11 237899999999999999876 67777444 34555555
Q ss_pred HHh
Q 038592 422 RDV 424 (478)
Q Consensus 422 ~~v 424 (478)
.+.
T Consensus 174 ~~~ 176 (219)
T PF05148_consen 174 KKL 176 (219)
T ss_dssp HCT
T ss_pred HHC
Confidence 544
No 413
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=70.98 E-value=43 Score=34.78 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |..+..+.+..+. +|.+++.+++-.+++++ +|.
T Consensus 204 g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~-~g~ 249 (384)
T cd08265 204 GAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE-MGA 249 (384)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-cCC
Confidence 46899986542 2233334445576 79999999998888877 564
No 414
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.98 E-value=29 Score=34.56 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=86.8
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-C------C---EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHH--HHHHHHhh
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-D------F---EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIE--FLEKLARQ 330 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~------~---~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~--~l~~~~~~ 330 (478)
-+||+.+...-|++...|.+.+ . . .|++||+-|.. .-+.+.-+.+|.-. .++.+.+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHH
Confidence 4688888888899888887753 2 1 29999997642 23445555565432 22222221
Q ss_pred hcCCCCCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHH----HHHccCcCcEEEEEe
Q 038592 331 IVGKNPDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLA----ARLILSDFGIFVMNV 406 (478)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~----~~~~L~~~Gilv~N~ 406 (478)
..+.+-|+|++|- .+|.+ |+..- .++.+.+.|.+ ....|+|||-||--.
T Consensus 111 ------------------------fggekAdlVvcDG-APDvT-GlHd~-DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 ------------------------FGGEKADLVVCDG-APDVT-GLHDL-DEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred ------------------------hCCCCccEEEeCC-CCCcc-ccccH-HHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 1346899999983 34433 54321 23445554443 346799999999755
Q ss_pred C-CCCchHHHHHHHHHHHhcCccEEEeec----ccceEEEEEEc
Q 038592 407 I-PPNRSFYDMLIQEFRDVFQELYEIDVG----NEENFVLIATG 445 (478)
Q Consensus 407 ~-~~~~~~~~~v~~~l~~vF~~v~~~~v~----~~~N~Vl~a~~ 445 (478)
. +++.. .+...|+..|..|+..+.. ....-.++|+.
T Consensus 164 fRg~~ts---lLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~ 204 (294)
T KOG1099|consen 164 FRGRDTS---LLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLG 204 (294)
T ss_pred hccCchH---HHHHHHHHHhhceeeecCCccccccceeeeeecc
Confidence 4 33333 4678899999999887642 22344566653
No 415
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=70.88 E-value=58 Score=31.00 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=32.5
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|+|.|.. .|.+...+.+..+.+|.++..+++-.+.+++ ||.
T Consensus 105 g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~ 150 (288)
T smart00829 105 GESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRE-LGI 150 (288)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC
Confidence 4589999843 4445555566668899999999999999854 675
No 416
>PRK13243 glyoxylate reductase; Reviewed
Probab=70.59 E-value=29 Score=35.89 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=25.3
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChH
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEV 296 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~ 296 (478)
.++|.|||+| |..+++.++ .++.+|.+++..+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~-~~G~~V~~~d~~~~ 184 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAK-GFGMRILYYSRTRK 184 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHH-HCCCEEEEECCCCC
Confidence 5799999999 345666665 46889999998764
No 417
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=70.54 E-value=19 Score=35.21 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=70.3
Q ss_pred CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCC--CeEEEEchHHHHHHHHHhhhc----CCC
Q 038592 262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGE--FLQVSVGDAIEFLEKLARQIV----GKN 335 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~--rl~v~v~Dg~~~l~~~~~~~~----~~~ 335 (478)
.|-+.||.|+|-.++.-.-.++ +.+-.-+|=|+..+..+++-+...+.- ..+-.+.++-+.|+. ++... ..+
T Consensus 39 aPCN~LVFGLghdsllW~aLN~-gGrTvFLEEd~~~i~~~~~~~p~leay~V~Y~t~~~~a~~LL~~-~~~~~~C~p~~~ 116 (225)
T TIGR01627 39 SPCNILVFGLAHQYLMWSSLNH-RGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLLQH-ARANPECRPVMN 116 (225)
T ss_pred CCceEEEeccCcchHHHHHhcC-CCeeEEecCCHHHHHHHhhcCCcceEEEEEeehhhhhHHHHHHH-hccCCcccCCCC
Confidence 3789999999998865333332 567788999999999988765432211 122234566666643 22100 011
Q ss_pred CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCC--CCCCCCCCCCChHHHHHHHHH
Q 038592 336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--NGTSAPPVEFVRKDVLLAARL 394 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--~g~s~Pp~~f~~~efl~~~~~ 394 (478)
+.-+..|+...-+.+++. -+..+|+|++|.-.+..- .|.+ ...++...+...++
T Consensus 117 ~~~~s~C~Lal~~LP~~v--Ye~~WDvImVDgP~Gy~~eaPGRM---~aIyTAav~AR~r~ 172 (225)
T TIGR01627 117 HQGSSDCKLELRDLPQQV--YNTKWDVIVVDGPRGDDLETPGRM---SSIYTAAVLARKGS 172 (225)
T ss_pred ccccCcCccccccCCHHH--hcccCcEEEEeCCCCCCCCCCcch---hhHHHHHHHHHhcc
Confidence 111333444433333322 256799999998776532 1211 13566666655554
No 418
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=70.52 E-value=41 Score=34.05 Aligned_cols=43 Identities=26% Similarity=0.413 Sum_probs=29.6
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg 306 (478)
..+|||.|.|+ |.++..+.+..+.+ |.++.-+++-.+.+++ +|
T Consensus 163 g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~-~g 207 (343)
T cd05285 163 GDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKE-LG 207 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-cC
Confidence 46899976543 33444455556776 9999999988888866 44
No 419
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.15 E-value=48 Score=33.35 Aligned_cols=97 Identities=20% Similarity=0.289 Sum_probs=60.5
Q ss_pred CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |.++..+.+..+.+|.++.-+++-.+.+++ +|.. .-+.....|..+-+.+..
T Consensus 166 ~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~~--~v~~~~~~~~~~~~~~~~------------ 230 (341)
T cd08297 166 GDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE-LGAD--AFVDFKKSDDVEAVKELT------------ 230 (341)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-cCCc--EEEcCCCccHHHHHHHHh------------
Confidence 57999999874 455556666678899999999998888854 6631 111111112223333211
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMN 405 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N 405 (478)
....+|+|+-+..+ .+.+..+.+.|+++|.++.-
T Consensus 231 ---------------~~~~vd~vl~~~~~----------------~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 231 ---------------GGGGAHAVVVTAVS----------------AAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred ---------------cCCCCCEEEEcCCc----------------hHHHHHHHHHhhcCCEEEEe
Confidence 23468988864321 33566777888999988853
No 420
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=70.07 E-value=52 Score=33.58 Aligned_cols=44 Identities=20% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |..+..+.+..+. +|.+++-+++-.+.+++ +|.
T Consensus 178 g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~g~ 223 (361)
T cd08231 178 GDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE-FGA 223 (361)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC
Confidence 46899997542 3334445555677 99999999998888865 565
No 421
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=69.57 E-value=50 Score=34.01 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=32.1
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+..+. .|.+++.++.-.+.+++ +|.
T Consensus 187 g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~-~g~ 232 (365)
T cd08278 187 GSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKE-LGA 232 (365)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-cCC
Confidence 46899997653 4455556666676 69999999999998876 453
No 422
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=69.08 E-value=5.5 Score=41.12 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHH
Q 038592 262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRV 300 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~v 300 (478)
.+.+|||=|+|.|.|+--|... +..+.+=|.+--|+=.
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLIC 187 (369)
T ss_pred cCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHH
Confidence 3689999999999999887754 4555555776666543
No 423
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=69.00 E-value=8.2 Score=39.59 Aligned_cols=40 Identities=15% Similarity=0.395 Sum_probs=31.6
Q ss_pred CCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHH
Q 038592 262 FRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVAR 302 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~ 302 (478)
...+|..||.||+....+|.+. +.+|++|||+|.-+..-+
T Consensus 63 ~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~ 102 (414)
T COG5379 63 IGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNR 102 (414)
T ss_pred CCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHH
Confidence 3679999999999655566654 589999999999877543
No 424
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=68.94 E-value=13 Score=35.66 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=31.8
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
.++++|+|+| |..+++.|.+ .+.+|++.|.++.-++..++.++
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~~~~~~~~~~~~g 72 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLE-EGAKLIVADINEEAVARAAELFG 72 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHHHcC
Confidence 4789999999 3345555544 37899999999987777666654
No 425
>PRK08605 D-lactate dehydrogenase; Validated
Probab=68.84 E-value=45 Score=34.47 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChH
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEV 296 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~ 296 (478)
.++|.|||+| |..++..|.+.++.+|.+.|.++.
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~ 181 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPN 181 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 4689999999 455777764456889999987653
No 426
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=68.80 E-value=61 Score=32.12 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=32.4
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.+ .|.+...+.+..+.++.++.-+++-.+.+++ +|.
T Consensus 141 ~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~ 186 (334)
T PTZ00354 141 GQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK-LAA 186 (334)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC
Confidence 4689999853 4455555555667888889999999999966 564
No 427
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=68.39 E-value=62 Score=34.57 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=27.5
Q ss_pred CCeEEEEeCch-h-HHHHHHHhhCC-CEEEEEECChHHHH-HHHH
Q 038592 263 RPKALCVGVGG-G-ALVSFLRTQLD-FEVVGVEMDEVVLR-VARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGg-G-~L~~~L~~~~~-~~V~~VEiDp~Vl~-vA~~ 303 (478)
..+|+|+|+|. | .++..|.. .+ .+|++++.++.-.+ .|++
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~-~G~~~V~v~~rs~~ra~~la~~ 223 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLR-KGVGKILIANRTYERAEDLAKE 223 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHH
Confidence 47999999983 3 34444544 45 68999999987644 5544
No 428
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=68.30 E-value=54 Score=36.03 Aligned_cols=117 Identities=11% Similarity=0.082 Sum_probs=69.5
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|-+||+| |..++.-|.++ +.+|++.+.+++-.+...+.+.- .+...-....+..++++.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~-G~~V~V~NRt~~k~~~l~~~~~~-~Ga~~~~~a~s~~e~v~~-------------- 69 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKK-EGNLPLYGFKDPEDFVLS-------------- 69 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC-CCeEEEECCCHHHHHHHHHhhhh-cCCcccccCCCHHHHHhc--------------
Confidence 4689999999 44566666554 68999999998887754442110 010000123445555432
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQE 420 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~ 420 (478)
-.+.|+||+-+.++.. ..+.+..+...|.+ |-++++..+.+........+.
T Consensus 70 ----------------l~~~dvIi~~v~~~~a------------V~~Vi~gl~~~l~~-G~iiID~sT~~~~~t~~~~~~ 120 (493)
T PLN02350 70 ----------------IQKPRSVIILVKAGAP------------VDQTIKALSEYMEP-GDCIIDGGNEWYENTERRIKE 120 (493)
T ss_pred ----------------CCCCCEEEEECCCcHH------------HHHHHHHHHhhcCC-CCEEEECCCCCHHHHHHHHHH
Confidence 2347999996644332 24556667777877 556678877665544555555
Q ss_pred HHHh
Q 038592 421 FRDV 424 (478)
Q Consensus 421 l~~v 424 (478)
+++.
T Consensus 121 l~~~ 124 (493)
T PLN02350 121 AAEK 124 (493)
T ss_pred HHHc
Confidence 5543
No 429
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=68.20 E-value=46 Score=33.37 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=58.2
Q ss_pred EEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCccccc
Q 038592 268 CVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSLK 345 (478)
Q Consensus 268 vIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~ 345 (478)
+||+| |+.++..|.+. +.+|.+++.+++.++...+. |. + ...+..+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G~~V~v~dr~~~~~~~l~~~-g~------~-~~~s~~~~~--------------------- 50 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-GHPVRVFDLFPDAVEEAVAA-GA------Q-AAASPAEAA--------------------- 50 (288)
T ss_pred CCcccHhHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHc-CC------e-ecCCHHHHH---------------------
Confidence 46777 34555555543 57999999999887766542 21 1 122322222
Q ss_pred CCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH---HHHHHccCcCcEEEEEeCCCCchHHHHHHHHHH
Q 038592 346 DGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL---LAARLILSDFGIFVMNVIPPNRSFYDMLIQEFR 422 (478)
Q Consensus 346 ~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl---~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~ 422 (478)
..-|+||+-+. +.. ...+.+ +.+...+++ |.+++++.+-+++..+.+.+.++
T Consensus 51 ------------~~advVil~vp-----------~~~-~~~~v~~g~~~l~~~~~~-g~~vid~st~~p~~~~~~~~~~~ 105 (288)
T TIGR01692 51 ------------EGADRVITMLP-----------AGQ-HVISVYSGDEGILPKVAK-GSLLIDCSTIDPDSARKLAELAA 105 (288)
T ss_pred ------------hcCCEEEEeCC-----------ChH-HHHHHHcCcchHhhcCCC-CCEEEECCCCCHHHHHHHHHHHH
Confidence 23589998442 111 123444 455566665 56777887777766666666665
Q ss_pred H
Q 038592 423 D 423 (478)
Q Consensus 423 ~ 423 (478)
+
T Consensus 106 ~ 106 (288)
T TIGR01692 106 A 106 (288)
T ss_pred H
Confidence 5
No 430
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=67.76 E-value=48 Score=31.27 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=58.6
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.++++|+|..-=-.-....++-..+|..||-++ +++-.. | .+|+ .----.+|.++...
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~--L~i~~~-~----~dr~--ssi~p~df~~~~~~------------- 59 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNK--LEIQEE-F----RDRL--SSILPVDFAKNWQK------------- 59 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecc--cccCcc-c----cccc--ccccHHHHHHHHHH-------------
Confidence 368999998844333222233346899999775 222111 1 1122 22223456655321
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCC--CC-CCCCCCChHHHHHHHHHccCcCcEEEEEeC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNG--TS-APPVEFVRKDVLLAARLILSDFGIFVMNVI 407 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g--~s-~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~ 407 (478)
-..+||.+.. ++.-...| .+ -|-...-+...+..++..|++||.|.+-+.
T Consensus 60 -------------y~~~fD~~as--~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 60 -------------YAGSFDFAAS--FSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred -------------hhccchhhhe--echhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 3455777665 22211111 11 122224568889999999999999998764
No 431
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=67.76 E-value=44 Score=33.52 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCeEEEEeCchhHH---HHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGGGAL---VSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGgG~L---~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
+.+++++..|.|.+ +..+.+..+.+|.+++.+++-.+.+++ +|.
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~ 189 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK-IGA 189 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC
Confidence 45788874444444 344555568899999999999999987 553
No 432
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=67.70 E-value=9.3 Score=41.20 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF 305 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F 305 (478)
..-||.||.|+|.|++...+...-.|+++|.=.-|.+.|++-.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~ 109 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIM 109 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHH
Confidence 4568899999999998877765568999999999999999865
No 433
>PRK10637 cysG siroheme synthase; Provisional
Probab=67.63 E-value=55 Score=35.40 Aligned_cols=39 Identities=18% Similarity=-0.028 Sum_probs=27.5
Q ss_pred CCeEEEEeCchhHHHHH--HHhhCCCEEEEE--ECChHHHHHHH
Q 038592 263 RPKALCVGVGGGALVSF--LRTQLDFEVVGV--EMDEVVLRVAR 302 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~--L~~~~~~~V~~V--EiDp~Vl~vA~ 302 (478)
.++|||||+|.=+.-+. |.+ .+.+|++| |+++++-+++.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~-~ga~v~visp~~~~~~~~l~~ 54 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLD-AGARLTVNALAFIPQFTAWAD 54 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCCCHHHHHHHh
Confidence 58999999997665432 222 26677777 88888877654
No 434
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=67.55 E-value=9.9 Score=43.60 Aligned_cols=113 Identities=12% Similarity=0.129 Sum_probs=66.7
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-----CCCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-----EDGEFLQVSVGDAIEFLEKLARQIVGKN 335 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-----~~d~rl~v~v~Dg~~~l~~~~~~~~~~~ 335 (478)
-++|.|||.| |+.++..+... +.+|+.+|.+++.++.++++..- .+..+++ ..+.-..+..+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~i-------- 381 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRIT--PAKMAGVLNGI-------- 381 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--hhhHHHHHhCe--------
Confidence 4689999999 55666655544 79999999999999987765320 0111111 01111111110
Q ss_pred CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCCc
Q 038592 336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPNR 411 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~~ 411 (478)
+... +. ..-..-|+||=-+ |+.+ +..++|..+-..++|+-+|..|..+-+-
T Consensus 382 -~~~~-------~~-----~~~~~aDlViEav------------~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i 433 (714)
T TIGR02437 382 -TPTL-------SY-----AGFDNVDIVVEAV------------VENPKVKAAVLAEVEQHVREDAILASNTSTISI 433 (714)
T ss_pred -EEeC-------CH-----HHhcCCCEEEEcC------------cccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 0000 00 0112356666532 3332 4589999999999999999999987643
No 435
>PRK06436 glycerate dehydrogenase; Provisional
Probab=67.50 E-value=51 Score=33.77 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=23.5
Q ss_pred CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECC
Q 038592 263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMD 294 (478)
Q Consensus 263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiD 294 (478)
.++|.+||+|. | .+++.+ +.++++|.+++..
T Consensus 122 gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~ 154 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRS 154 (303)
T ss_pred CCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCC
Confidence 57999999993 4 466543 4568999999875
No 436
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=67.23 E-value=55 Score=32.17 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=31.3
Q ss_pred CeEEEEeCc--hhHHHHHHHhhC--CCEEEEEECChHHHHHHHHhcC
Q 038592 264 PKALCVGVG--GGALVSFLRTQL--DFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~--~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
.+|.+||+| |+.++..|.+.. ..+|.+++-+++-.+.+.+.++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g 49 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYG 49 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcC
Confidence 479999998 456776666542 2589999999988776666554
No 437
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=67.14 E-value=7.5 Score=38.79 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=20.6
Q ss_pred eEEEEeCc-hhHHHHHHHhhCCCEEEEEECChH
Q 038592 265 KALCVGVG-GGALVSFLRTQLDFEVVGVEMDEV 296 (478)
Q Consensus 265 ~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~ 296 (478)
+|+|||+| +|.++..+....+.+|+++|-++.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 79999999 454333333344789999998653
No 438
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=67.09 E-value=11 Score=40.28 Aligned_cols=44 Identities=20% Similarity=0.145 Sum_probs=33.8
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|+|+|.|. |.....+.+.++.+|.++|+||.-.+.|++ +|+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-~G~ 246 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-EGY 246 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-cCC
Confidence 57999999995 444444445568899999999999999876 454
No 439
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=66.96 E-value=59 Score=32.94 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=30.7
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+..+. .|++++.++.-.+.+++ +|.
T Consensus 176 ~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~ 221 (350)
T cd08240 176 DEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-AGA 221 (350)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC
Confidence 46899986542 3344444555576 79999999999999865 564
No 440
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.07 E-value=46 Score=34.70 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=36.3
Q ss_pred CCCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 262 FRPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 262 ~~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+++-|+|+|| |.++--..+.++.+|++++-...=-+-|-+.+|-
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGA 227 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGA 227 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCc
Confidence 357999999996 6677666777899999999998666666677764
No 441
>PRK07680 late competence protein ComER; Validated
Probab=66.05 E-value=51 Score=32.75 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=27.9
Q ss_pred eEEEEeCc--hhHHHHHHHhhC--C-CEEEEEECChHHHHHHHHh
Q 038592 265 KALCVGVG--GGALVSFLRTQL--D-FEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 265 ~VLvIGlG--gG~L~~~L~~~~--~-~~V~~VEiDp~Vl~vA~~~ 304 (478)
+|.+||+| |++++..|.+.. . ..|.+++.+++-.+...+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~ 46 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKER 46 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHH
Confidence 58999998 456777666542 2 3799999998766555443
No 442
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.97 E-value=64 Score=31.12 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCeEEEEeCch--hHHHHHHHhhC--CC-EEEEEEC-ChHHHHHHHHhcC
Q 038592 263 RPKALCVGVGG--GALVSFLRTQL--DF-EVVGVEM-DEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~~~L~~~~--~~-~V~~VEi-Dp~Vl~vA~~~Fg 306 (478)
..+|.+||+|. .+++..+.+.. .. ++.+++- +++-.+...+.++
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 53 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN 53 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC
Confidence 36899999993 34555555442 33 3767765 4555554444333
No 443
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=65.93 E-value=41 Score=33.95 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCeEEEEeCchhH---HHHHHHhhCC-CEEEE-EECChHHHHHHHHhcCCCCCCCeEEEEchHHHHH
Q 038592 263 RPKALCVGVGGGA---LVSFLRTQLD-FEVVG-VEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFL 324 (478)
Q Consensus 263 ~~~VLvIGlGgG~---L~~~L~~~~~-~~V~~-VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l 324 (478)
+.||.|||+|+.. ....+.+..+ +.+.+ +|.|++-.+...+.|+.. -...|.-+++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~------~~~~~~~~ll 63 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA------KAYTDLEELL 63 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC------cccCCHHHHh
Confidence 5799999998433 3334444433 35555 599999988777777753 2334555555
No 444
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=65.93 E-value=4.2 Score=41.62 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=56.0
Q ss_pred ccchhcHHHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHH----hcCCC-
Q 038592 234 VLVHVYLVPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQ----YFGLE- 308 (478)
Q Consensus 234 ~L~~~Y~~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~----~Fg~~- 308 (478)
.+...|+..|+.+. ..++|.++|+ .|..-......-...|+.+|+|.-|...+.. ||++.
T Consensus 159 e~sk~y~p~la~gy--------------~~~~v~l~iG-DG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~ 223 (337)
T KOG1562|consen 159 ESSKQYLPTLACGY--------------EGKKVKLLIG-DGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVL 223 (337)
T ss_pred HHHHHHhHHHhccc--------------CCCceEEEec-cHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHH
Confidence 34678999998872 1468888887 6654333332235899999999888877654 55542
Q ss_pred ---CCCCeEEEEchHHHHHHHHHh
Q 038592 309 ---DGEFLQVSVGDAIEFLEKLAR 329 (478)
Q Consensus 309 ---~d~rl~v~v~Dg~~~l~~~~~ 329 (478)
.+..+.+.++|.+-+....+.
T Consensus 224 ~aLk~dgv~~~q~ec~wl~~~~i~ 247 (337)
T KOG1562|consen 224 DALKGDGVVCTQGECMWLHLDYIK 247 (337)
T ss_pred HhhCCCcEEEEecceehHHHHHHH
Confidence 356789999998877766655
No 445
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=65.85 E-value=34 Score=31.97 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCeEEEEeCch--hH-HHHHHHhhCCCEEEEEECC
Q 038592 263 RPKALCVGVGG--GA-LVSFLRTQLDFEVVGVEMD 294 (478)
Q Consensus 263 ~~~VLvIGlGg--G~-L~~~L~~~~~~~V~~VEiD 294 (478)
.++|||||.|. |. ++..|.+. +.+|+++.-.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 58999999994 66 56666653 5678888743
No 446
>PLN02702 L-idonate 5-dehydrogenase
Probab=65.77 E-value=47 Score=34.00 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=30.9
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+. .|.+++.++.-.+.+++ +|.
T Consensus 182 g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~ 227 (364)
T PLN02702 182 ETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQ-LGA 227 (364)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-hCC
Confidence 46899997542 3344445555565 58999999999999887 454
No 447
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.76 E-value=4.1 Score=42.66 Aligned_cols=107 Identities=16% Similarity=0.063 Sum_probs=62.5
Q ss_pred CCCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHh---cCCC-CCCCeEEEEchHHHHHHHHHhhhcCCC
Q 038592 262 FRPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQY---FGLE-DGEFLQVSVGDAIEFLEKLARQIVGKN 335 (478)
Q Consensus 262 ~~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~---Fg~~-~d~rl~v~v~Dg~~~l~~~~~~~~~~~ 335 (478)
.|+++|.+|.|-|.-.-.+...+ . -.++.+|.+|.+-++...- -... .+-|-.=+..|-..+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~l------------ 180 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSL------------ 180 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCC------------
Confidence 37899999999887665566665 3 4899999999887765432 1111 111211122221111
Q ss_pred CCCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEe
Q 038592 336 PDSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNV 406 (478)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~ 406 (478)
.....|+++|+ .+....+.. + +--...++.+..+++|||.||+-=
T Consensus 181 -------------------p~ad~ytl~i~----~~eLl~d~~-e--k~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 181 -------------------PAADLYTLAIV----LDELLPDGN-E--KPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred -------------------Cccceeehhhh----hhhhccccC-c--chHHHHHHHHHHhccCCCeEEEEe
Confidence 13567998887 111111111 1 111338899999999999998633
No 448
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=65.55 E-value=76 Score=33.40 Aligned_cols=102 Identities=22% Similarity=0.313 Sum_probs=63.9
Q ss_pred CCeEEEEeCchhHHHHHHHhhC-C-CEEEEEECChHHHHHHHHhcCCCCCCCeEEE-EchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVGGGALVSFLRTQL-D-FEVVGVEMDEVVLRVARQYFGLEDGEFLQVS-VGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~-~-~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~-v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
..+|.|+|+|+=.|+-...... + .+|.+||+++.=+++|++ ||... -++-. .+|..+.+.++
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~-fGAT~--~vn~~~~~~vv~~i~~~------------ 250 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK-FGATH--FVNPKEVDDVVEAIVEL------------ 250 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh-cCCce--eecchhhhhHHHHHHHh------------
Confidence 4689999999866664443333 4 699999999999999977 46431 01111 01677777664
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE-EeCCCCc
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM-NVIPPNR 411 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~-N~~~~~~ 411 (478)
.+.-.|..|- .. | ..+.++.....+..+|..++ -+.....
T Consensus 251 ----------------T~gG~d~~~e-~~------G---------~~~~~~~al~~~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 251 ----------------TDGGADYAFE-CV------G---------NVEVMRQALEATHRGGTSVIIGVAGAGQ 291 (366)
T ss_pred ----------------cCCCCCEEEE-cc------C---------CHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 2223555532 21 1 14578888888888898775 4444433
No 449
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=65.51 E-value=25 Score=31.25 Aligned_cols=44 Identities=25% Similarity=0.250 Sum_probs=28.8
Q ss_pred CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
.++++++|+|+ ..++..|.+....+|++++.+++-.+...+.++
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~ 64 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFG 64 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 57999999873 334444443323589999999877665444443
No 450
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=65.38 E-value=63 Score=32.52 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=55.1
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |.+...+.+..+. .+.+++-++.-.+++++ +|. +.-+.....+..+.+.+.
T Consensus 169 g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~-~ga--~~v~~~~~~~~~~~i~~~------------- 232 (345)
T cd08287 169 GSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE-FGA--TDIVAERGEEAVARVREL------------- 232 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-cCC--ceEecCCcccHHHHHHHh-------------
Confidence 45788866431 2333344455576 58999999888888876 454 111111111222333321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
..+..+|+|+- .-. ....+..+.+.|+++|.++.
T Consensus 233 --------------~~~~~~d~il~-~~g---------------~~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 233 --------------TGGVGADAVLE-CVG---------------TQESMEQAIAIARPGGRVGY 266 (345)
T ss_pred --------------cCCCCCCEEEE-CCC---------------CHHHHHHHHHhhccCCEEEE
Confidence 12345898873 211 13467888899999998874
No 451
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=65.32 E-value=68 Score=34.29 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=28.1
Q ss_pred CCeEEEEeCch-hH-HHHHHHhhCCC-EEEEEECChHHHH-HHHHhcC
Q 038592 263 RPKALCVGVGG-GA-LVSFLRTQLDF-EVVGVEMDEVVLR-VARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlGg-G~-L~~~L~~~~~~-~V~~VEiDp~Vl~-vA~~~Fg 306 (478)
..+|+|+|.|. |. ++..|.. .+. +|++++.++.-.+ .|++ +|
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~-~G~~~V~v~~r~~~ra~~la~~-~g 227 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAE-KGVRKITVANRTLERAEELAEE-FG 227 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHH-CCCCeEEEEeCCHHHHHHHHHH-cC
Confidence 57999999983 33 3344443 454 8999999987755 5544 44
No 452
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=65.14 E-value=61 Score=33.09 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=28.3
Q ss_pred eEEEEeCchhH--HHHHHHhhCCCEEEEEECChHH-HHHHHHh
Q 038592 265 KALCVGVGGGA--LVSFLRTQLDFEVVGVEMDEVV-LRVARQY 304 (478)
Q Consensus 265 ~VLvIGlGgG~--L~~~L~~~~~~~V~~VEiDp~V-l~vA~~~ 304 (478)
+|..||+|.=+ .+.-|.+. +..+++.+.+++- .+.++.+
T Consensus 2 kIafIGLG~MG~pmA~~L~~a-G~~v~v~~r~~~ka~~~~~~~ 43 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKA-GHEVTVYNRTPEKAAELLAAA 43 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHC-CCEEEEEeCChhhhhHHHHHc
Confidence 78999999444 44444432 6899999999988 7777654
No 453
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=65.14 E-value=29 Score=36.12 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCeEEEEeCch-hH-HHHHHHhhCCC-EEEEEECCh
Q 038592 263 RPKALCVGVGG-GA-LVSFLRTQLDF-EVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIGlGg-G~-L~~~L~~~~~~-~V~~VEiDp 295 (478)
..+|||+|+|+ |+ ++..|... ++ +|+.||-|.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 46999999994 33 55555543 54 999999984
No 454
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=65.09 E-value=1.4e+02 Score=30.98 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||+|.|+ |.++..+.+..+. +|++++-+++-.+.|++ +|.
T Consensus 191 g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~-lGa 236 (373)
T cd08299 191 GSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKE-LGA 236 (373)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH-cCC
Confidence 46899997542 3333334444577 89999999999999965 674
No 455
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=65.07 E-value=23 Score=40.62 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF 305 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F 305 (478)
-++|.|||.| |..++..+...-+..|+.+|.+++-++.++++.
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~ 353 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYS 353 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 3689999999 355666555345789999999999998887654
No 456
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.83 E-value=7.9 Score=35.95 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=46.9
Q ss_pred cccchhcH----HHHHHHHhhhcccccccccCCCCCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHh
Q 038592 233 GVLVHVYL----VPMVASCALIGSYIGERIRFGFRPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 233 ~~L~~~Y~----~~m~~~l~l~~~~~~~~~~~g~~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~ 304 (478)
..++.+|. +.+-..|.|+..+ ...+.+.||.|.|-.....+++--..-++||++|-.+..+|-+
T Consensus 47 RR~cvPYVpAtteQv~nVLSll~~n--------~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~ 114 (199)
T KOG4058|consen 47 RRLCVPYVPATTEQVENVLSLLRGN--------PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLH 114 (199)
T ss_pred heecccccCccHHHHHHHHHHccCC--------CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHH
Confidence 45677886 3455556666532 2468999999999877666666446889999999999998744
No 457
>PLN02928 oxidoreductase family protein
Probab=64.83 E-value=39 Score=35.25 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCeEEEEeCch-hH-HHHHHHhhCCCEEEEEECC
Q 038592 263 RPKALCVGVGG-GA-LVSFLRTQLDFEVVGVEMD 294 (478)
Q Consensus 263 ~~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEiD 294 (478)
.+++.|||+|. |. ++..+ +.++++|.+++..
T Consensus 159 gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~ 191 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRL-RPFGVKLLATRRS 191 (347)
T ss_pred CCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCC
Confidence 57999999994 54 44444 3568999999865
No 458
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=64.77 E-value=47 Score=33.38 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=30.7
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHh
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQY 304 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~ 304 (478)
..+|||.|.|+ |..+..+.+..+. +|.+++-++...+.++++
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~ 209 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM 209 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc
Confidence 46899977553 4444445555677 899999999999988775
No 459
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=64.73 E-value=74 Score=32.07 Aligned_cols=95 Identities=20% Similarity=0.200 Sum_probs=57.8
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEE-chHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSV-GDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v-~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
..+|||.|.|+ |.+...+.+..+.+|.++.-+++-.+.+++ +|. +.-+.... .|..+.+....
T Consensus 166 ~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~--~~~i~~~~~~~~~~~~~~~~------------ 230 (345)
T cd08260 166 GEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE-LGA--VATVNASEVEDVAAAVRDLT------------ 230 (345)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH-hCC--CEEEccccchhHHHHHHHHh------------
Confidence 46999999542 233344455568899999999999999866 564 22122222 23333333321
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEE
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~ 404 (478)
.+ .+|+|+- .-. ....+..+.+.|+++|.++.
T Consensus 231 ---------------~~-~~d~vi~-~~g---------------~~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 231 ---------------GG-GAHVSVD-ALG---------------IPETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred ---------------CC-CCCEEEE-cCC---------------CHHHHHHHHHHhhcCCEEEE
Confidence 23 6898874 211 13466778888999998774
No 460
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=64.46 E-value=63 Score=34.03 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=30.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+..+.+ |.+++.++.-++.|++ +|.
T Consensus 186 g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~-~Ga 231 (393)
T TIGR02819 186 GSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS-FGC 231 (393)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH-cCC
Confidence 46888876652 34444455556664 6677999999999988 564
No 461
>PRK06849 hypothetical protein; Provisional
Probab=64.28 E-value=25 Score=36.86 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.7
Q ss_pred CCCeEEEEeCchhH---HHHHHHhhCCCEEEEEECChHHH
Q 038592 262 FRPKALCVGVGGGA---LVSFLRTQLDFEVVGVEMDEVVL 298 (478)
Q Consensus 262 ~~~~VLvIGlGgG~---L~~~L~~~~~~~V~~VEiDp~Vl 298 (478)
++++|||+|++.+. +++.+++. +.+|.++|.++.-.
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~-G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA-GHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHH
Confidence 37899999999863 55666654 78999999997544
No 462
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=64.27 E-value=93 Score=29.50 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
..+|+|.|.. .|.....+.+..+.+|.++.-++.-.+.+++.++
T Consensus 109 g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~ 154 (293)
T cd05195 109 GESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGG 154 (293)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCC
Confidence 4689999743 3445555566668899999999888888887664
No 463
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=64.18 E-value=48 Score=33.04 Aligned_cols=122 Identities=18% Similarity=0.129 Sum_probs=71.0
Q ss_pred eEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcccc
Q 038592 265 KALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGACSL 344 (478)
Q Consensus 265 ~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~~~ 344 (478)
+++.+=+|.|++..-+.+.---.+.++|+|+...+.-+..|+ .++.+|..++-.+..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l---------------- 58 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDL---------------- 58 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHH----------------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccc----------------
Confidence 566776777777776766422378899999999999999886 788999888754411
Q ss_pred cCCCccCCCCCCCCceeEEEEeCCCCCCC-----CCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC----CchHHH
Q 038592 345 KDGNFLDNSDRVDNKFDVIMVDLDSGDAR-----NGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP----NRSFYD 415 (478)
Q Consensus 345 ~~~~~~~~~~~~~~~yDvIivDv~s~d~~-----~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~----~~~~~~ 415 (478)
+. .+|+|+-=.-+.+-+ .|+..+ ..-+-.+|++.++. ++|.-+++=||..- +...++
T Consensus 59 -----------~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~-r~~L~~~~~~~v~~-~~Pk~~~~ENV~~l~~~~~~~~~~ 124 (335)
T PF00145_consen 59 -----------PK-DVDLLIGGPPCQGFSIAGKRKGFDDP-RNSLFFEFLRIVKE-LKPKYFLLENVPGLLSSKNGEVFK 124 (335)
T ss_dssp -----------HH-T-SEEEEE---TTTSTTSTHHCCCCH-TTSHHHHHHHHHHH-HS-SEEEEEEEGGGGTGGGHHHHH
T ss_pred -----------cc-cceEEEeccCCceEeccccccccccc-cchhhHHHHHHHhh-ccceEEEecccceeeccccccccc
Confidence 22 488888733221111 011111 11123456666654 57866666699653 223455
Q ss_pred HHHHHHHH
Q 038592 416 MLIQEFRD 423 (478)
Q Consensus 416 ~v~~~l~~ 423 (478)
.+++.|.+
T Consensus 125 ~i~~~l~~ 132 (335)
T PF00145_consen 125 EILEELEE 132 (335)
T ss_dssp HHHHHHHH
T ss_pred cccccccc
Confidence 55555554
No 464
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=64.13 E-value=70 Score=31.45 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=54.0
Q ss_pred EEEEEECChHHHHHHHHhcCCCCCCCeEEE-----EchHHHHHHHHHhhhcCCCCCCCCcccccCCCccCCCCCCCCcee
Q 038592 287 EVVGVEMDEVVLRVARQYFGLEDGEFLQVS-----VGDAIEFLEKLARQIVGKNPDSFGACSLKDGNFLDNSDRVDNKFD 361 (478)
Q Consensus 287 ~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~-----v~Dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD 361 (478)
+|-.||=||.|.++-++|..-. +..+++ .+.|...+++ -+.|
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~--~gF~~vg~A~~~~ea~~~i~~-------------------------------~~pD 48 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQI--PGFSVVGTAGTLEEAKMIIEE-------------------------------FKPD 48 (224)
T ss_pred cEEEEcCchHHHHHHHHHHHhC--CCceEEEeeccHHHHHHHHHh-------------------------------hCCC
Confidence 6788999999999999997532 223322 2344444433 1239
Q ss_pred EEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 362 VIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 362 vIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
+|++|++-+|.. | -++|..++..=-+..++++-..+
T Consensus 49 LILLDiYmPd~~-G----------i~lL~~ir~~~~~~DVI~iTAA~ 84 (224)
T COG4565 49 LILLDIYMPDGN-G----------IELLPELRSQHYPVDVIVITAAS 84 (224)
T ss_pred EEEEeeccCCCc-c----------HHHHHHHHhcCCCCCEEEEeccc
Confidence 999999987764 2 57888898888888888765543
No 465
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=64.02 E-value=65 Score=33.01 Aligned_cols=44 Identities=20% Similarity=0.362 Sum_probs=29.3
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCE-EEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFE-VVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~-V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.| .|.++..+.+..+.+ |.+++-+++-.+.+++ ++.
T Consensus 188 g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~-~g~ 233 (367)
T cd08263 188 GETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKE-LGA 233 (367)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-hCC
Confidence 4688888643 233333444455666 9999999999988865 564
No 466
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.01 E-value=8 Score=40.10 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=23.9
Q ss_pred CCeEEEEeCchhHHH--HHHHhhCCCEEEEEECChH
Q 038592 263 RPKALCVGVGGGALV--SFLRTQLDFEVVGVEMDEV 296 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~--~~L~~~~~~~V~~VEiDp~ 296 (478)
+.+|+|||+|-++++ ..|.+ .+.+|+++|-++.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~ 38 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAE 38 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence 579999999965544 33433 4789999997754
No 467
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=63.81 E-value=42 Score=34.06 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=22.6
Q ss_pred CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECCh
Q 038592 263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp 295 (478)
..+|.+||+|. ..++..|.+. +.+|++++.++
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 46899999994 3455555433 57889998875
No 468
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=63.58 E-value=83 Score=31.03 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCeEEEEeC--chhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGV--GGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGl--GgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|. +.|.++..+.+..+.+|.++.-+++-.+.+++ +|.
T Consensus 143 ~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~ 188 (324)
T cd08244 143 GDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA-LGA 188 (324)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCC
Confidence 468999995 34556666777778899999999999998854 564
No 469
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=63.57 E-value=1.6e+02 Score=31.69 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=68.3
Q ss_pred CeEEEEeCchhHHHHHHHhhC-CCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQL-DFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~-~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.+|-|||||-=+||....-.. +++|.+||||+..++.-.+- +..+..-|--+.+++.... ++.+.+..+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-------~~~i~e~~~~~~v~~~v~~---g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-------ESYIEEPDLDEVVKEAVES---GKLRATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-------cceeecCcHHHHHHHHHhc---CCceEecCh
Confidence 799999999766665544433 68999999999999865321 2233333444445553321 111111110
Q ss_pred cccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPP 409 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~ 409 (478)
..-..-|++|+-+-.+-. +--.|-.. +-....+.+...|++|-++++--..+
T Consensus 80 ------------~~l~~~dv~iI~VPTPl~--~~~~pDls-~v~~aa~sIa~~L~kG~LVIlEST~~ 131 (436)
T COG0677 80 ------------EELKECDVFIICVPTPLK--KYREPDLS-YVESAARSIAPVLKKGDLVILESTTP 131 (436)
T ss_pred ------------hhcccCCEEEEEecCCcC--CCCCCChH-HHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 112367888886633211 11112111 33566778888999988888754433
No 470
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=63.47 E-value=1.6e+02 Score=29.06 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=24.7
Q ss_pred CCeEEEEeCchh----HHHHHHHhh---CCCEEEEEECChHHHHHHHHhcCCC
Q 038592 263 RPKALCVGVGGG----ALVSFLRTQ---LDFEVVGVEMDEVVLRVARQYFGLE 308 (478)
Q Consensus 263 ~~~VLvIGlGgG----~L~~~L~~~---~~~~V~~VEiDp~Vl~vA~~~Fg~~ 308 (478)
++.|++.+..+| +++..|... .+.+|..||.|..--.+. .+|+..
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~-~~~~~~ 154 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQH-RNFKLS 154 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHH-HhcCCC
Confidence 344555544444 233333333 267999999997654443 445543
No 471
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=63.47 E-value=30 Score=36.16 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=68.4
Q ss_pred EEEEeCc-hh-HHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHH--HHHHHhhhcCCCCCCCC
Q 038592 266 ALCVGVG-GG-ALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEF--LEKLARQIVGKNPDSFG 340 (478)
Q Consensus 266 VLvIGlG-gG-~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~--l~~~~~~~~~~~~~~~~ 340 (478)
|+|||+| .| ..+..|.+..+. +|++.+.+++-++...+.+ ...+++.+.-|..+. +.++.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~l~~~~------------ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL---LGDRVEAVQVDVNDPESLAELL------------ 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-----TTTTEEEEE--TTTHHHHHHHH------------
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc---cccceeEEEEecCCHHHHHHHH------------
Confidence 7899996 22 355566665555 9999999999877665543 235677777665543 44432
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCC--------CCCCCCCCCCCh----HHHHHHHHHccCcCcEEEEEeCC
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDAR--------NGTSAPPVEFVR----KDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~--------~g~s~Pp~~f~~----~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
...|+||.-+-..... .|. ++++ .+.+..+.+..+..|+.++.-..
T Consensus 66 -----------------~~~dvVin~~gp~~~~~v~~~~i~~g~-----~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G 123 (386)
T PF03435_consen 66 -----------------RGCDVVINCAGPFFGEPVARACIEAGV-----HYVDTSYVTEEMLALDEEAKEAGVTALPGCG 123 (386)
T ss_dssp -----------------TTSSEEEE-SSGGGHHHHHHHHHHHT------EEEESS-HHHHHHHCHHHHHHTTSEEE-S-B
T ss_pred -----------------hcCCEEEECCccchhHHHHHHHHHhCC-----CeeccchhHHHHHHHHHHHHhhCCEEEeCcc
Confidence 2358888732110000 000 1111 23344444555556777766666
Q ss_pred CCchHHHHHHHHHHHhcC----ccEEEe
Q 038592 409 PNRSFYDMLIQEFRDVFQ----ELYEID 432 (478)
Q Consensus 409 ~~~~~~~~v~~~l~~vF~----~v~~~~ 432 (478)
-++.+...+...+.+-|. .+..+.
T Consensus 124 ~~PGl~~~~a~~~~~~~~~~~~~v~~~~ 151 (386)
T PF03435_consen 124 FDPGLSNLLARYAADELDAEGDEVESVD 151 (386)
T ss_dssp TTTBHHHHHHHHHHHHHHHTTHEEEEEE
T ss_pred cccchHHHHHHHHHHHhhhhcccceEEE
Confidence 666666666666666666 554444
No 472
>PRK06847 hypothetical protein; Provisional
Probab=63.43 E-value=8.5 Score=39.55 Aligned_cols=34 Identities=32% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCeEEEEeCchhHHHHHHH-hhCCCEEEEEECChH
Q 038592 263 RPKALCVGVGGGALVSFLR-TQLDFEVVGVEMDEV 296 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~-~~~~~~V~~VEiDp~ 296 (478)
+.+|+|||+|-++++..+. ...+.+|+++|-++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 5799999999665443322 234789999997754
No 473
>PRK10867 signal recognition particle protein; Provisional
Probab=63.01 E-value=50 Score=35.69 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=22.5
Q ss_pred CCeEEEEeCchh-------HHHHHHHhhCCCEEEEEECChHHH
Q 038592 263 RPKALCVGVGGG-------ALVSFLRTQLDFEVVGVEMDEVVL 298 (478)
Q Consensus 263 ~~~VLvIGlGgG-------~L~~~L~~~~~~~V~~VEiDp~Vl 298 (478)
|.-++++|..|- -|+.++....+.+|..|+.|.--.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 556788887643 234444433357899999995433
No 474
>PRK07236 hypothetical protein; Provisional
Probab=62.93 E-value=9.4 Score=39.73 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=24.0
Q ss_pred CCeEEEEeCchhHHH--HHHHhhCCCEEEEEECChH
Q 038592 263 RPKALCVGVGGGALV--SFLRTQLDFEVVGVEMDEV 296 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~--~~L~~~~~~~V~~VEiDp~ 296 (478)
+.+|+|||+|-++|+ ..|. ..+.+|+++|-.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~-~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLR-RAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHH-hCCCCEEEEecCCC
Confidence 579999999965543 3333 34789999998764
No 475
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=62.86 E-value=22 Score=36.70 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCC---CCCCeEEEEchHHHHHHHHHhhhcCCCCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLE---DGEFLQVSVGDAIEFLEKLARQIVGKNPD 337 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~---~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~ 337 (478)
-++|.|||.| |++++..+.. -+..|+..|++++.++.++.+-.-. ..++-++--.+.-..+..+..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~-------- 73 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP-------- 73 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc--------
Confidence 3689999999 5566665554 4589999999999999887764210 011111222222223322110
Q ss_pred CCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCCch
Q 038592 338 SFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPNRS 412 (478)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~~~ 412 (478)
+.. ...-..-|+||==+ ++.+ +..+.|..+-.+++|+-+|..|+.+-.-.
T Consensus 74 -~~~------------~~~l~~~DlVIEAv------------~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it 124 (307)
T COG1250 74 -TTD------------LAALKDADLVIEAV------------VEDLELKKQVFAELEALAKPDAILASNTSSLSIT 124 (307)
T ss_pred -cCc------------hhHhccCCEEEEec------------cccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH
Confidence 000 00012356666522 3332 45889999999999999999999876543
No 476
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=62.81 E-value=25 Score=40.34 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=64.0
Q ss_pred CeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC-----CCCCCeEEEEchHHHHHHHHHhhhcCCCC
Q 038592 264 PKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL-----EDGEFLQVSVGDAIEFLEKLARQIVGKNP 336 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~-----~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~ 336 (478)
++|.|||.| |..++..+... +.+|+.+|.+++.++.++++..- ....++ --.+..+.+..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~--~~~~~~~~~~~i--------- 381 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKI--DGAKMAGVLSSI--------- 381 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC--ChhhHHHHHhCe---------
Confidence 589999999 34566555543 78999999999999887765421 001111 011111111110
Q ss_pred CCCCcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCC-ChHHHHHHHHHccCcCcEEEEEeCCCC
Q 038592 337 DSFGACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEF-VRKDVLLAARLILSDFGIFVMNVIPPN 410 (478)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f-~~~efl~~~~~~L~~~Gilv~N~~~~~ 410 (478)
+... +. ..-..-|+||=-+ |+.+ ...++|..+-+.++|+-+|..|..+-.
T Consensus 382 ~~~~-------~~-----~~~~~aDlViEav------------~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~ 432 (715)
T PRK11730 382 RPTL-------DY-----AGFERVDVVVEAV------------VENPKVKAAVLAEVEQKVREDTILASNTSTIS 432 (715)
T ss_pred EEeC-------CH-----HHhcCCCEEEecc------------cCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 0000 00 0112356555422 3332 458899999999999999999998764
No 477
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=62.21 E-value=16 Score=37.62 Aligned_cols=58 Identities=14% Similarity=-0.022 Sum_probs=36.8
Q ss_pred CCeEEEEeCchhHH--HHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHH
Q 038592 263 RPKALCVGVGGGAL--VSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEK 326 (478)
Q Consensus 263 ~~~VLvIGlGgG~L--~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~ 326 (478)
..+|+|||+|-+++ +..|.+ .+.+|+++|-++.... -+...++|...+...+++++++
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~~~-----~~~~~~~r~~~l~~~~~~~l~~ 64 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPPRP-----ADDAWDSRVYAISPSSQAFLER 64 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCccc-----cCCCCCCceEeecHHHHHHHHH
Confidence 35899999995443 334433 4789999998877432 1111234555666677777765
No 478
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=62.12 E-value=46 Score=36.34 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=38.9
Q ss_pred ceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCCCCchHHHHHHHHHHHhcCccE-EEeecccc
Q 038592 359 KFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIPPNRSFYDMLIQEFRDVFQELY-EIDVGNEE 437 (478)
Q Consensus 359 ~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~~l~~vF~~v~-~~~v~~~~ 437 (478)
+-|+|++=+ |.. ....+++.+...|++|..|.+--. |.-+| .+..+.++
T Consensus 97 ~ADvVviLl------------PDt-~q~~v~~~i~p~LK~Ga~L~fsHG-----------------Fni~~~~i~~~~dv 146 (487)
T PRK05225 97 QADLVINLT------------PDK-QHSDVVRAVQPLMKQGAALGYSHG-----------------FNIVEVGEQIRKDI 146 (487)
T ss_pred hCCEEEEcC------------ChH-HHHHHHHHHHhhCCCCCEEEecCC-----------------ceeeeCceeCCCCC
Confidence 469999832 333 378888999999999998875211 11111 23345677
Q ss_pred eEEEEEEcCCC
Q 038592 438 NFVLIATGLSI 448 (478)
Q Consensus 438 N~Vl~a~~~~~ 448 (478)
+.|++|-+.|-
T Consensus 147 dVimvAPKgpG 157 (487)
T PRK05225 147 TVVMVAPKCPG 157 (487)
T ss_pred cEEEECCCCCC
Confidence 77777776665
No 479
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=62.10 E-value=1.1e+02 Score=31.58 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=31.4
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.| .|.++..+.+..+.+|.++..+++-.+.+.+.+|.
T Consensus 181 g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga 226 (357)
T PLN02514 181 GLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA 226 (357)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC
Confidence 4689999765 34455555666678888888888777666666774
No 480
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=62.04 E-value=11 Score=31.91 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=27.0
Q ss_pred CCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 356 VDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 356 ~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
-++.||++|+|+.++ ++++.|..+...++-||++++=+..
T Consensus 8 LG~e~~~~i~d~~~g-------------~~pnal~a~~gtv~gGGllill~p~ 47 (92)
T PF08351_consen 8 LGQEFDLLIFDAFEG-------------FDPNALAALAGTVRGGGLLILLLPP 47 (92)
T ss_dssp TT--BSSEEEE-SS----------------HHHHHHHHTTB-TT-EEEEEES-
T ss_pred hCCccCEEEEEccCC-------------CCHHHHHHHhcceecCeEEEEEcCC
Confidence 356799999998653 5689999999999999999986543
No 481
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=62.02 E-value=18 Score=41.71 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhc
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYF 305 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~F 305 (478)
-++|.|||.| |+.++..+... +.+|+.+|.+++-++.+.++.
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~~l~~~~~~i 378 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPAGLDRGQQQV 378 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHHHHHHHHHHH
Confidence 3689999999 55566655544 789999999999999877654
No 482
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=61.96 E-value=12 Score=39.60 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=36.7
Q ss_pred CCeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHH
Q 038592 263 RPKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQ 303 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~ 303 (478)
-+.|..+|.|-|.|++||.=+.+..|.+||=+....+.|++
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 46899999999999999998889999999999888887763
No 483
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=61.80 E-value=59 Score=28.84 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=32.9
Q ss_pred CCeEEEEeCchhH--HHHHHHhhCC-CEEEEEECChHHH-HHHHHhcCCCCCCCeEEEEch
Q 038592 263 RPKALCVGVGGGA--LVSFLRTQLD-FEVVGVEMDEVVL-RVARQYFGLEDGEFLQVSVGD 319 (478)
Q Consensus 263 ~~~VLvIGlGgG~--L~~~L~~~~~-~~V~~VEiDp~Vl-~vA~~~Fg~~~d~rl~v~v~D 319 (478)
.++|||||.|+-+ ....|... + .+|+++--+++-. +++.++ ....++++--+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~~~ 67 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEF----GGVNIEAIPLE 67 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHH----TGCSEEEEEGG
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHc----CccccceeeHH
Confidence 5799999998533 44455544 5 4799999997744 455554 23345554433
No 484
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.78 E-value=66 Score=34.61 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=20.1
Q ss_pred CCeEEEEeCc-hh---HH---HHHHH-hhCCCEEEEEECChH
Q 038592 263 RPKALCVGVG-GG---AL---VSFLR-TQLDFEVVGVEMDEV 296 (478)
Q Consensus 263 ~~~VLvIGlG-gG---~L---~~~L~-~~~~~~V~~VEiDp~ 296 (478)
...++++|-+ .| ++ +..+. ..-+.+|..|+.|+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578888854 44 12 22222 112469999999994
No 485
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=61.56 E-value=38 Score=35.73 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=22.6
Q ss_pred CCeEEEEeCch-hH-HHHHHHhhCC-CEEEEEECCh
Q 038592 263 RPKALCVGVGG-GA-LVSFLRTQLD-FEVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIGlGg-G~-L~~~L~~~~~-~~V~~VEiDp 295 (478)
..+|||+|+|| |+ .+..|.. .+ .+++.||-|.
T Consensus 41 ~~~VliiG~GglG~~v~~~La~-~Gvg~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLAS-AGVGTITLIDDDT 75 (370)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEeCCE
Confidence 46999999995 33 4444543 35 5999999884
No 486
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=61.44 E-value=9.1 Score=39.47 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=16.5
Q ss_pred ChHHHHHHHHHccCcCcEEEE
Q 038592 384 VRKDVLLAARLILSDFGIFVM 404 (478)
Q Consensus 384 ~~~efl~~~~~~L~~~Gilv~ 404 (478)
-+..||+.+-..+++|-+|.+
T Consensus 220 kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 220 KTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred HHHHHHHHHHhhcCCCcEEEE
Confidence 357899999999999776654
No 487
>PRK07045 putative monooxygenase; Reviewed
Probab=61.34 E-value=9.3 Score=39.70 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCeEEEEeCchhHHH-HHHHhhCCCEEEEEECChH
Q 038592 263 RPKALCVGVGGGALV-SFLRTQLDFEVVGVEMDEV 296 (478)
Q Consensus 263 ~~~VLvIGlGgG~L~-~~L~~~~~~~V~~VEiDp~ 296 (478)
..+|+|||+|-++++ ..+....+.+|+++|-.+.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 468999999954433 3333334789999996664
No 488
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=61.32 E-value=95 Score=32.45 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=65.0
Q ss_pred CCeEEEEeCch--hHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCC
Q 038592 263 RPKALCVGVGG--GALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFG 340 (478)
Q Consensus 263 ~~~VLvIGlGg--G~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~ 340 (478)
.++|.+||+|. -..+.-|+. ++.+|.+.+-.+.-.+.|.. .|+ ++ .+..+.+
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d-~G~~ViV~~r~~~s~~~A~~-~G~------~v--~sl~Eaa---------------- 69 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRD-SGVEVVVGVRPGKSFEVAKA-DGF------EV--MSVSEAV---------------- 69 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHH-CcCEEEEEECcchhhHHHHH-cCC------EE--CCHHHHH----------------
Confidence 47899999993 345544442 57899888744444444433 232 22 2333332
Q ss_pred cccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH-HHHHHccCcCcEEEEEeCCCCchHHHHHHH
Q 038592 341 ACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL-LAARLILSDFGIFVMNVIPPNRSFYDMLIQ 419 (478)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl-~~~~~~L~~~Gilv~N~~~~~~~~~~~v~~ 419 (478)
..-|+|++=+.+ . .+..++ ..+...|++|.+|++--. - .
T Consensus 70 -----------------k~ADVV~llLPd------------~-~t~~V~~~eil~~MK~GaiL~f~hg-f--n------- 109 (335)
T PRK13403 70 -----------------RTAQVVQMLLPD------------E-QQAHVYKAEVEENLREGQMLLFSHG-F--N------- 109 (335)
T ss_pred -----------------hcCCEEEEeCCC------------h-HHHHHHHHHHHhcCCCCCEEEECCC-c--c-------
Confidence 236999995422 1 124454 468888999888774111 0 0
Q ss_pred HHHHhcCccEEEeecccceEEEEEEcCCC
Q 038592 420 EFRDVFQELYEIDVGNEENFVLIATGLSI 448 (478)
Q Consensus 420 ~l~~vF~~v~~~~v~~~~N~Vl~a~~~~~ 448 (478)
=+|. .+..+.+++.+++|-+.|-
T Consensus 110 ---i~~~---~i~pp~~vdv~mvaPKgpG 132 (335)
T PRK13403 110 ---IHFG---QINPPSYVDVAMVAPKSPG 132 (335)
T ss_pred ---eecC---ceeCCCCCeEEEECCCCCC
Confidence 0122 2344677888888877775
No 489
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=61.22 E-value=69 Score=31.78 Aligned_cols=44 Identities=20% Similarity=0.285 Sum_probs=32.6
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.. .|.+...+.+..+.+|.++.-+++-.+.+++ +|.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~-~g~ 192 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK-LGA 192 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH-cCC
Confidence 3589999873 3445555666668899999999999999865 564
No 490
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=60.99 E-value=41 Score=33.32 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=24.6
Q ss_pred CeEEEEeCc--hhHHHHHHHhhC---CCEEEEEECChH
Q 038592 264 PKALCVGVG--GGALVSFLRTQL---DFEVVGVEMDEV 296 (478)
Q Consensus 264 ~~VLvIGlG--gG~L~~~L~~~~---~~~V~~VEiDp~ 296 (478)
.+|.+||+| ||+++.-|.+.- ..+|.+++.+++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~ 41 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK 41 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh
Confidence 479999999 777888777652 236888877663
No 491
>PRK06475 salicylate hydroxylase; Provisional
Probab=60.78 E-value=9.9 Score=39.80 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=22.8
Q ss_pred CeEEEEeCchhHHH--HHHHhhCCCEEEEEECChH
Q 038592 264 PKALCVGVGGGALV--SFLRTQLDFEVVGVEMDEV 296 (478)
Q Consensus 264 ~~VLvIGlGgG~L~--~~L~~~~~~~V~~VEiDp~ 296 (478)
.+|+|||+|-++|+ ..|. ..+.+|+++|-.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~-~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELA-ARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHH-hCCCcEEEEecCCc
Confidence 68999999965543 3333 34789999996653
No 492
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=60.73 E-value=52 Score=34.26 Aligned_cols=85 Identities=25% Similarity=0.195 Sum_probs=52.1
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECC-hHHHHHHHHhcCCCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMD-EVVLRVARQYFGLEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSF 339 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiD-p~Vl~vA~~~Fg~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~ 339 (478)
.++|.+||+| |.+++.-|+. .+.+|.+.+.+ +...+.|++. |+ + ..|..+.+
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~-sG~~Vvv~~r~~~~s~~~A~~~-G~------~--~~s~~eaa--------------- 71 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRD-SGVDVVVGLREGSKSWKKAEAD-GF------E--VLTVAEAA--------------- 71 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHH-CCCEEEEEECCchhhHHHHHHC-CC------e--eCCHHHHH---------------
Confidence 4689999999 4556666654 36788777655 4455555543 43 1 12444333
Q ss_pred CcccccCCCccCCCCCCCCceeEEEEeCCCCCCCCCCCCCCCCCChHHHH-HHHHHccCcCcEEE
Q 038592 340 GACSLKDGNFLDNSDRVDNKFDVIMVDLDSGDARNGTSAPPVEFVRKDVL-LAARLILSDFGIFV 403 (478)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~yDvIivDv~s~d~~~g~s~Pp~~f~~~efl-~~~~~~L~~~Gilv 403 (478)
..-|+|++=+ ||.. ..+++ +.+...|+++-+++
T Consensus 72 ------------------~~ADVVvLaV-----------Pd~~--~~~V~~~~I~~~Lk~g~iL~ 105 (330)
T PRK05479 72 ------------------KWADVIMILL-----------PDEV--QAEVYEEEIEPNLKEGAALA 105 (330)
T ss_pred ------------------hcCCEEEEcC-----------CHHH--HHHHHHHHHHhcCCCCCEEE
Confidence 2359999932 2322 36677 77888899877763
No 493
>PRK10083 putative oxidoreductase; Provisional
Probab=60.70 E-value=75 Score=31.88 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=29.7
Q ss_pred CCeEEEEeCch-hHHHHHHHhh-CCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQ-LDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~-~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+. .+. .|.+++.+++-.+++++ +|.
T Consensus 161 g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~-~Ga 207 (339)
T PRK10083 161 QDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE-SGA 207 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-hCC
Confidence 46899999542 2233334443 465 58889999999999987 454
No 494
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=60.64 E-value=37 Score=35.44 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=27.2
Q ss_pred CCeEEEEeCch-hH-HHHHHHhhCCCEEEEEECChHHHHHHHHhcC
Q 038592 263 RPKALCVGVGG-GA-LVSFLRTQLDFEVVGVEMDEVVLRVARQYFG 306 (478)
Q Consensus 263 ~~~VLvIGlGg-G~-L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg 306 (478)
.++|.++|+|. |. ++.-|.. |+..|..--..+...+.+.+|..
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~-Fg~~i~y~~r~~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKP-FGCVILYHSRTQLPPEEAYEYYA 206 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhh-ccceeeeecccCCchhhHHHhcc
Confidence 57999999983 32 4444443 45566666666666666666643
No 495
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=60.56 E-value=95 Score=31.32 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=28.2
Q ss_pred CCeEEEEeCch-hHHHHHHHhhCCC-EEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVGG-GALVSFLRTQLDF-EVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlGg-G~L~~~L~~~~~~-~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.|+ |.++..+.+..+. +|.++.-+++-.+.+++ +|.
T Consensus 164 g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~-~g~ 209 (341)
T cd05281 164 GKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK-MGA 209 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hCc
Confidence 46888866432 3344445555676 68888778887788775 454
No 496
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=60.39 E-value=82 Score=31.13 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|||.|.. -|..+..+.+..+.++.++--+++-.+.+++ +|.
T Consensus 140 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~-~g~ 185 (324)
T cd08292 140 GQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA-LGI 185 (324)
T ss_pred CCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh-cCC
Confidence 4689998863 4455555666667877776655555666655 464
No 497
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=60.35 E-value=59 Score=33.71 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=23.9
Q ss_pred CCeEEEEeCc-hhHHHHHHHhhCCCEEEEEEC
Q 038592 263 RPKALCVGVG-GGALVSFLRTQLDFEVVGVEM 293 (478)
Q Consensus 263 ~~~VLvIGlG-gG~L~~~L~~~~~~~V~~VEi 293 (478)
.++|-|||+| -|.-.....+.++++|.++|.
T Consensus 142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEECC
Confidence 5799999999 465444455567999999987
No 498
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=60.23 E-value=50 Score=33.96 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=24.1
Q ss_pred CCeEEEEeCch-h-HHHHHHHhhCCCEEEEEECCh
Q 038592 263 RPKALCVGVGG-G-ALVSFLRTQLDFEVVGVEMDE 295 (478)
Q Consensus 263 ~~~VLvIGlGg-G-~L~~~L~~~~~~~V~~VEiDp 295 (478)
.++|.+||+|. | .+++.|. .++++|.+++..+
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~-afG~~V~~~~~~~ 169 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQ-TWGFPLRCWSRSR 169 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCCC
Confidence 47999999993 4 4666555 4689999998754
No 499
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=60.17 E-value=86 Score=31.23 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.1
Q ss_pred CCeEEEEeCc--hhHHHHHHHhhCC-CEEEEEECChHHHHHHHHhcCC
Q 038592 263 RPKALCVGVG--GGALVSFLRTQLD-FEVVGVEMDEVVLRVARQYFGL 307 (478)
Q Consensus 263 ~~~VLvIGlG--gG~L~~~L~~~~~-~~V~~VEiDp~Vl~vA~~~Fg~ 307 (478)
..+|+|.|.+ .|.+...+.+..+ .+|.++..+++-.+.+++ +|.
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~g~ 196 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKE-LGA 196 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHh-cCC
Confidence 4689999853 3445555666678 899999999999999865 564
No 500
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=60.16 E-value=9.1 Score=40.35 Aligned_cols=104 Identities=20% Similarity=0.174 Sum_probs=71.1
Q ss_pred CeEEEEeCchhHHHHHHHhhCCCEEEEEECChHHHHHHHHhcC-CCCCCCeEEEEchHHHHHHHHHhhhcCCCCCCCCcc
Q 038592 264 PKALCVGVGGGALVSFLRTQLDFEVVGVEMDEVVLRVARQYFG-LEDGEFLQVSVGDAIEFLEKLARQIVGKNPDSFGAC 342 (478)
Q Consensus 264 ~~VLvIGlGgG~L~~~L~~~~~~~V~~VEiDp~Vl~vA~~~Fg-~~~d~rl~v~v~Dg~~~l~~~~~~~~~~~~~~~~~~ 342 (478)
.+++.+|+|-|....++.......+++++.++.-+..+..+.- ...+.+..+.++|..+-
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~------------------- 172 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM------------------- 172 (364)
T ss_pred ccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC-------------------
Confidence 3789999999998887776557899999999988888776542 11233344455554432
Q ss_pred cccCCCccCCCCCCCCceeEEEE-eCCCCCCCCCCCCCCCCCChHHHHHHHHHccCcCcEEEEEeCC
Q 038592 343 SLKDGNFLDNSDRVDNKFDVIMV-DLDSGDARNGTSAPPVEFVRKDVLLAARLILSDFGIFVMNVIP 408 (478)
Q Consensus 343 ~~~~~~~~~~~~~~~~~yDvIiv-Dv~s~d~~~g~s~Pp~~f~~~efl~~~~~~L~~~Gilv~N~~~ 408 (478)
+.++..||.+-. |+- .+. | ....+++.+.+.++|||++++--+.
T Consensus 173 -----------~fedn~fd~v~~ld~~-----~~~--~----~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 173 -----------PFEDNTFDGVRFLEVV-----CHA--P----DLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred -----------CCCccccCcEEEEeec-----ccC--C----cHHHHHHHHhcccCCCceEEeHHHH
Confidence 125677887764 321 122 1 2378999999999999999975443
Done!