Query 038593
Match_columns 122
No_of_seqs 107 out of 324
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 12:35:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 9E-36 2E-40 244.4 12.1 113 1-119 270-384 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.5E-35 3.2E-40 239.2 13.1 118 1-121 214-334 (334)
3 PHA00457 inhibitor of host bac 78.8 2.6 5.6E-05 26.5 2.7 34 6-39 22-58 (63)
4 PF02375 JmjN: jmjN domain; I 66.8 2.1 4.6E-05 23.7 0.3 15 14-28 1-15 (34)
5 PF14904 FAM86: Family of unkn 59.8 13 0.00029 25.5 3.2 31 67-98 67-99 (100)
6 smart00545 JmjN Small domain f 57.9 6.4 0.00014 22.8 1.2 16 13-28 2-17 (42)
7 PRK01683 trans-aconitate 2-met 54.8 90 0.002 23.5 8.2 90 14-121 162-257 (258)
8 PRK14103 trans-aconitate 2-met 51.2 1.1E+02 0.0023 23.3 8.7 73 14-104 159-232 (255)
9 COG4342 Uncharacterized protei 47.8 13 0.00028 30.0 1.8 29 7-35 110-141 (291)
10 PF07466 DUF1517: Protein of u 42.3 34 0.00074 27.5 3.5 40 12-53 233-272 (289)
11 COG4090 Uncharacterized protei 41.6 24 0.00053 25.7 2.3 25 11-35 95-119 (154)
12 KOG3262 H/ACA small nucleolar 39.0 21 0.00045 27.5 1.7 38 4-41 72-114 (215)
13 PF12426 DUF3674: RNA dependen 38.6 19 0.0004 20.9 1.1 17 3-19 20-36 (41)
14 PF14205 Cys_rich_KTR: Cystein 34.7 17 0.00036 22.4 0.5 8 12-19 26-33 (55)
15 COG1232 HemY Protoporphyrinoge 32.8 34 0.00075 29.2 2.2 27 73-100 136-162 (444)
16 PF06043 Reo_P9: Reovirus P9-l 32.2 35 0.00075 27.9 2.0 30 11-40 251-280 (333)
17 PF07288 DUF1447: Protein of u 30.7 73 0.0016 20.5 3.0 26 17-42 26-51 (69)
18 PF09630 DUF2024: Domain of un 27.7 56 0.0012 21.6 2.1 17 20-36 64-80 (81)
19 PF09626 DHC: Dihaem cytochrom 27.7 1E+02 0.0022 21.7 3.5 34 67-105 19-52 (120)
20 PF08704 GCD14: tRNA methyltra 26.5 92 0.002 24.4 3.5 33 15-48 144-179 (247)
21 TIGR02021 BchM-ChlM magnesium 26.5 57 0.0012 24.1 2.3 29 13-42 180-208 (219)
22 PF09584 Phageshock_PspD: Phag 26.0 58 0.0013 20.7 1.9 20 71-96 46-65 (66)
23 PF12631 GTPase_Cys_C: Catalyt 25.9 35 0.00076 21.4 0.9 31 63-95 38-72 (73)
24 PRK11705 cyclopropane fatty ac 25.5 3.9E+02 0.0084 22.1 8.8 83 16-120 290-372 (383)
25 PF02095 Extensin_1: Extensin- 25.0 25 0.00054 14.4 0.0 8 14-21 2-9 (10)
26 PF07340 Herpes_IE1: Cytomegal 24.0 47 0.001 28.0 1.5 16 14-29 363-378 (392)
27 COG5423 Predicted metal-bindin 23.6 77 0.0017 23.6 2.4 19 12-30 50-68 (167)
28 smart00828 PKS_MT Methyltransf 23.0 99 0.0022 22.6 3.0 30 13-43 118-147 (224)
29 cd08788 CARD_NOD2_2_CARD15 Cas 22.8 37 0.0008 22.5 0.5 27 1-28 27-53 (81)
30 PRK13710 plasmid maintenance p 22.4 69 0.0015 20.6 1.8 15 20-34 52-66 (72)
31 PF09921 DUF2153: Uncharacteri 22.3 1E+02 0.0022 22.1 2.7 38 63-101 39-80 (126)
32 TIGR03762 exosort_arch archaea 22.2 91 0.002 25.2 2.7 30 65-96 226-255 (274)
33 PF03721 UDPG_MGDP_dh_N: UDP-g 21.6 68 0.0015 23.7 1.9 34 3-36 31-67 (185)
34 PF08427 DUF1741: Domain of un 20.9 1.9E+02 0.004 22.7 4.2 50 16-75 181-231 (237)
35 PF13670 PepSY_2: Peptidase pr 20.7 1.4E+02 0.003 18.8 3.0 21 19-40 30-50 (83)
36 TIGR02752 MenG_heptapren 2-hep 20.3 1.2E+02 0.0025 22.4 2.9 24 17-41 196-219 (231)
37 KOG0362 Chaperonin complex com 20.2 1.1E+02 0.0023 27.0 2.9 57 62-119 34-107 (537)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=9e-36 Score=244.43 Aligned_cols=113 Identities=28% Similarity=0.465 Sum_probs=104.1
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593 1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS 80 (122)
Q Consensus 1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~ 80 (122)
|+|++||+||||+|+|+||++||+++|++||||+|++||+++..| ++.++. +.|....|+++|+++||++||||++
T Consensus 270 GlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~-~~~~~~---~~d~~~~g~~~a~~~RA~~E~ll~~ 345 (386)
T PLN02668 270 GLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGS-PLVVNE---PDDAAEVGRAMANSCRSVAGVLVDA 345 (386)
T ss_pred CCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccC-cccccC---cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999 764433 2355568999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhHHHhh--cCCCeEEEEEEEe
Q 038593 81 ICGDDAIVEEIYRRFAIKVTDEILEK--GRGAFANLLISLV 119 (122)
Q Consensus 81 HFG~~~imdeLF~r~~~~v~~~~~~~--~~~~~~~~~vsL~ 119 (122)
|||++ |||+||+||++++++ +++. ++.+++++++||+
T Consensus 346 HFG~~-i~D~lF~r~~~~v~~-~~~~~~~~~~~~~~~~sL~ 384 (386)
T PLN02668 346 HIGEE-LSNELFLRVERRATS-HAKELLEKLQFFHIVASLS 384 (386)
T ss_pred HcCHH-HHHHHHHHHHHHHHH-HHHhhcccCceEEEEEEEe
Confidence 99999 999999999999999 9998 8889999999996
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.5e-35 Score=239.23 Aligned_cols=118 Identities=40% Similarity=0.663 Sum_probs=96.2
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593 1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS 80 (122)
Q Consensus 1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~ 80 (122)
|+|++||+|+||+|+|+||++||+++|+++|||+|++||+++..| ...........|...+|+.+++++||++||||.+
T Consensus 214 GlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~ 292 (334)
T PF03492_consen 214 GLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFEQPW-WSVPDDESWKEDAKEYARNVANYIRAVFEPLLKA 292 (334)
T ss_dssp TSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEEEET-CCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEeecc-cccchhhhcccchhhhHHHHHHhHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998665 3322111123355679999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhHHHhhcC---CCeEEEEEEEeec
Q 038593 81 ICGDDAIVEEIYRRFAIKVTDEILEKGR---GAFANLLISLVKK 121 (122)
Q Consensus 81 HFG~~~imdeLF~r~~~~v~~~~~~~~~---~~~~~~~vsL~rk 121 (122)
|||++ |||+||+||++++++ +++..+ .+++++++||+||
T Consensus 293 hfG~e-i~D~LF~r~~~~v~~-~~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 293 HFGEE-IMDELFERYAKKVAE-HLEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HH-HH-HHHHHHHHHHHHHHH-HHHHTHTT-BEEEEEEEEEEE-
T ss_pred HhChH-HHHHHHHHHHHHHHH-HHHHhhccCCCcEEEEEEEeeC
Confidence 99999 999999999999999 988655 7899999999998
No 3
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=78.75 E-value=2.6 Score=26.48 Aligned_cols=34 Identities=21% Similarity=0.403 Sum_probs=28.2
Q ss_pred cccCcccCCccCCCHHHHHHHHH---hhCceeEeeee
Q 038593 6 SKLKSSNFPIYAPYVDEVKQVIE---REGSFDIHQLE 39 (122)
Q Consensus 6 eklDsFNiP~Y~Ps~eEv~~~Ie---~eGsF~I~~le 39 (122)
..-.||-+|+|+-|.+|-.+.-+ .+--|.+.|+.
T Consensus 22 g~~~sfEVPV~A~SLeeA~e~AE~~Y~~aGf~VtRiR 58 (63)
T PHA00457 22 GSGQSFEVPVYAKSLEEATELAEWQYVPAGFVVTRIR 58 (63)
T ss_pred ccCceEEeeeecccHHHHHHHHHHhhhccCcEEEEec
Confidence 34579999999999999888877 46778888875
No 4
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=66.81 E-value=2.1 Score=23.72 Aligned_cols=15 Identities=33% Similarity=0.773 Sum_probs=8.2
Q ss_pred CccCCCHHHHHHHHH
Q 038593 14 PIYAPYVDEVKQVIE 28 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie 28 (122)
|+|.||.+|.+.-+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788899999876543
No 5
>PF14904 FAM86: Family of unknown function
Probab=59.83 E-value=13 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHhhHHHHHhh--hCChhHHHHHHHHHHHH
Q 038593 67 TRHVRAVGESLLSSI--CGDDAIVEEIYRRFAIK 98 (122)
Q Consensus 67 a~~iRAv~Epll~~H--FG~~~imdeLF~r~~~~ 98 (122)
.++.|+.+--+|..| .|.+ +.|+|++.|++.
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~E-plDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCE-PLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHhh
Confidence 578899999999876 6788 999999999874
No 6
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=57.88 E-value=6.4 Score=22.77 Aligned_cols=16 Identities=25% Similarity=0.696 Sum_probs=13.3
Q ss_pred CCccCCCHHHHHHHHH
Q 038593 13 FPIYAPYVDEVKQVIE 28 (122)
Q Consensus 13 iP~Y~Ps~eEv~~~Ie 28 (122)
+|+|.||.+|.+.-+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6999999999887654
No 7
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=54.77 E-value=90 Score=23.52 Aligned_cols=90 Identities=11% Similarity=0.175 Sum_probs=56.0
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHh-hHHHHHhhhCChhHHHHHH
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAV-GESLLSSICGDDAIVEEIY 92 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv-~Epll~~HFG~~~imdeLF 92 (122)
+.+.|+++++...+.+.| |.++..+.. +..+.. +...+...+++. +.|++ ++++++ -.+++-
T Consensus 162 ~~~~~~~~~~~~~l~~~g-~~v~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~l~~~-~~~~f~ 224 (258)
T PRK01683 162 RAPLPPPHAYYDALAPAA-CRVDIWHTT---YYHPMP-----------SAQAIVEWVKGTGLRPFL-DPLTES-EQAAFL 224 (258)
T ss_pred CcCCCCHHHHHHHHHhCC-Cceeeeeee---eeeecC-----------CchhhhhhhhhccHHHHH-hhCCHH-HHHHHH
Confidence 346689999999999999 445544432 201111 233444556653 46665 789988 888888
Q ss_pred HHHHHHHhhHHHh-hcCC----CeEEEEEEEeec
Q 038593 93 RRFAIKVTDEILE-KGRG----AFANLLISLVKK 121 (122)
Q Consensus 93 ~r~~~~v~~~~~~-~~~~----~~~~~~vsL~rk 121 (122)
+.|.+.+.+ ... ...+ .+.-++++.+|+
T Consensus 225 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 225 AAYLARIAE-AYPLQADGKVLLAFPRLFIVARRK 257 (258)
T ss_pred HHHHHHHHH-HCCCCCCCcEEcccceEEEEEEec
Confidence 889888877 543 2222 344556666664
No 8
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=51.23 E-value=1.1e+02 Score=23.28 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=45.8
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHh-hHHHHHhhhCChhHHHHHH
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAV-GESLLSSICGDDAIVEEIY 92 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv-~Epll~~HFG~~~imdeLF 92 (122)
+.+.++++++.+++++.| |++...+..... +.. ....+...+++. +.|++. .++++ -.+++-
T Consensus 159 ~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~---~~~-----------~~~~~~~~~~~~~~~~~~~-~l~~~-~~~~~~ 221 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAG-CKVDAWETTYVH---QLT-----------GEDPVLDWITGTALRPVRE-RLSDD-SWEQFR 221 (255)
T ss_pred CcCCCCHHHHHHHHHhCC-CeEEEEeeeeee---eCC-----------Cchhhhhhhhccchhhhhh-hCCHH-HHHHHH
Confidence 445679999999999999 887766643111 100 112222334432 355555 79988 778888
Q ss_pred HHHHHHHhhHHH
Q 038593 93 RRFAIKVTDEIL 104 (122)
Q Consensus 93 ~r~~~~v~~~~~ 104 (122)
+.+.+.+.+ .+
T Consensus 222 ~~~~~~l~~-~~ 232 (255)
T PRK14103 222 AELIPLLRE-AY 232 (255)
T ss_pred HHHHHHHHH-HC
Confidence 888888877 54
No 9
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.82 E-value=13 Score=29.97 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=23.5
Q ss_pred ccCccc-CCccCCCHHHHH--HHHHhhCceeE
Q 038593 7 KLKSSN-FPIYAPYVDEVK--QVIEREGSFDI 35 (122)
Q Consensus 7 klDsFN-iP~Y~Ps~eEv~--~~Ie~eGsF~I 35 (122)
|++-+| .-.|.||.||++ +.+.++-++.+
T Consensus 110 k~k~~~g~dlyIp~de~ir~~~~l~r~~~e~~ 141 (291)
T COG4342 110 KVKKSNGVDLYIPSDEEIRATEELAREYSERA 141 (291)
T ss_pred ccCcCCCcceecCCHHHHHHHHHHHHHhcchH
Confidence 678888 899999999999 77777655544
No 10
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=42.28 E-value=34 Score=27.53 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=35.6
Q ss_pred cCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCC
Q 038593 12 NFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVEND 53 (122)
Q Consensus 12 NiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~ 53 (122)
.+|- ..+.+++|+.+++=|+..-++|..+++.| .|..+.|
T Consensus 233 ~lp~-~~~~~~l~~aL~~l~~~~~~~l~a~evlW-tP~~~gd 272 (289)
T PF07466_consen 233 KLPT-INSAEDLREALRKLGSISSDRLLAVEVLW-TPQAEGD 272 (289)
T ss_pred CCCC-CCCHHHHHHHHHHHhCCChhheeeEEEEE-CCCCCCC
Confidence 7888 88999999999999999999999999999 8865543
No 11
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.62 E-value=24 Score=25.72 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=20.6
Q ss_pred ccCCccCCCHHHHHHHHHhhCceeE
Q 038593 11 SNFPIYAPYVDEVKQVIEREGSFDI 35 (122)
Q Consensus 11 FNiP~Y~Ps~eEv~~~Ie~eGsF~I 35 (122)
--||.|..+++.+|+++++.|.=.+
T Consensus 95 LaMP~~gv~~d~~kel~ee~~~kkl 119 (154)
T COG4090 95 LAMPKIGVTPDDAKELLEELGNKKL 119 (154)
T ss_pred cccCcCCCCHHHHHHHHHhcCCCce
Confidence 4589999999999999997665433
No 12
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=39.03 E-value=21 Score=27.50 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=29.9
Q ss_pred cccccCcccCCccCCCHHHHHHHHH-----hhCceeEeeeeee
Q 038593 4 EESKLKSSNFPIYAPYVDEVKQVIE-----REGSFDIHQLETF 41 (122)
Q Consensus 4 ~eeklDsFNiP~Y~Ps~eEv~~~Ie-----~eGsF~I~~le~~ 41 (122)
+..|+--||.|+|.-+-+.|=.+=| .+-+|+|.-.+-+
T Consensus 72 ~~~kIPyfNAPIylenk~qIGKVDEIfG~i~d~~fsIK~~dgv 114 (215)
T KOG3262|consen 72 TNKKIPYFNAPIYLENKEQIGKVDEIFGPINDVHFSIKPSDGV 114 (215)
T ss_pred ccccCCCCCCceeecchhhhcchhhhcccccccEEEEecCCCc
Confidence 5678889999999999888766555 4678998877744
No 13
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=38.59 E-value=19 Score=20.89 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=13.3
Q ss_pred ccccccCcccCCccCCC
Q 038593 3 IEESKLKSSNFPIYAPY 19 (122)
Q Consensus 3 I~eeklDsFNiP~Y~Ps 19 (122)
|.-.|...|+||-|-|-
T Consensus 20 i~~~k~~~y~IP~Y~~~ 36 (41)
T PF12426_consen 20 IGGPKTQPYYIPDYRGI 36 (41)
T ss_pred eCCcccccccCCCCCCc
Confidence 45578889999999774
No 14
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=34.69 E-value=17 Score=22.42 Aligned_cols=8 Identities=63% Similarity=1.456 Sum_probs=6.8
Q ss_pred cCCccCCC
Q 038593 12 NFPIYAPY 19 (122)
Q Consensus 12 NiP~Y~Ps 19 (122)
|+|.|+|-
T Consensus 26 NfPlyCpK 33 (55)
T PF14205_consen 26 NFPLYCPK 33 (55)
T ss_pred cccccCCC
Confidence 88999983
No 15
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=32.84 E-value=34 Score=29.18 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=21.6
Q ss_pred hhHHHHHhhhCChhHHHHHHHHHHHHHh
Q 038593 73 VGESLLSSICGDDAIVEEIYRRFAIKVT 100 (122)
Q Consensus 73 v~Epll~~HFG~~~imdeLF~r~~~~v~ 100 (122)
-++..+..|||++ +++.+|..|...+-
T Consensus 136 sv~~f~r~~fG~e-v~~~~~~pll~giy 162 (444)
T COG1232 136 SVGEFIRRRFGEE-VVERFIEPLLEGIY 162 (444)
T ss_pred CHHHHHHHHHhHH-HHHHHHHHHhhchh
Confidence 3567888999999 99999988876653
No 16
>PF06043 Reo_P9: Reovirus P9-like family; InterPro: IPR009268 These proteins of unknown function are found in Rice black streaked dwarf virus (RBSDV) and other viruses.; PDB: 3VJJ_B.
Probab=32.19 E-value=35 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=15.8
Q ss_pred ccCCccCCCHHHHHHHHHhhCceeEeeeee
Q 038593 11 SNFPIYAPYVDEVKQVIEREGSFDIHQLET 40 (122)
Q Consensus 11 FNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~ 40 (122)
|-+|--.-.++++.+.|.++|.|++-....
T Consensus 251 ~~L~s~is~p~~i~q~i~k~GLFk~i~s~~ 280 (333)
T PF06043_consen 251 FQLSSLISVPNSILQRIAKDGLFKIITSAT 280 (333)
T ss_dssp HH-SS-----HHHHHHHHHS-SEEE-----
T ss_pred HHhhhhcCChHHHHHHHHhcCceEEEeecc
Confidence 445666678999999999999999866554
No 17
>PF07288 DUF1447: Protein of unknown function (DUF1447); InterPro: IPR009907 This family consists of several bacterial proteins of around 70 residues in length. The function of this family is unknown.
Probab=30.73 E-value=73 Score=20.47 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 17 APYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 17 ~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
+.|..|+|..|+.+-.|.|+-++.+.
T Consensus 26 a~s~~evR~~ve~~t~yNIEfI~~L~ 51 (69)
T PF07288_consen 26 AESEVEVRKLVEDNTPYNIEFIQPLS 51 (69)
T ss_pred cCCHHHHHHHHHhCCCcCEEEEeecc
Confidence 57899999999999999999999884
No 18
>PF09630 DUF2024: Domain of unknown function (DUF2024); InterPro: IPR018592 This protein of 86 residues is expressed in bacteria. It consists of two alpha helices and four beta strands. Its function is unknown.; PDB: 2HFQ_A.
Probab=27.67 E-value=56 Score=21.65 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhCceeEe
Q 038593 20 VDEVKQVIEREGSFDIH 36 (122)
Q Consensus 20 ~eEv~~~Ie~eGsF~I~ 36 (122)
++||++.|+++|.|.|.
T Consensus 64 ~~ev~~~I~~~Gy~I~~ 80 (81)
T PF09630_consen 64 PPEVEQAIKQQGYFIIK 80 (81)
T ss_dssp -HHHHHHHHHHSEEEE-
T ss_pred CHHHHHHHHHCCeEEEe
Confidence 57999999999999764
No 19
>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.
Probab=27.67 E-value=1e+02 Score=21.69 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=17.7
Q ss_pred HHHHHHhhHHHHHhhhCChhHHHHHHHHHHHHHhhHHHh
Q 038593 67 TRHVRAVGESLLSSICGDDAIVEEIYRRFAIKVTDEILE 105 (122)
Q Consensus 67 a~~iRAv~Epll~~HFG~~~imdeLF~r~~~~v~~~~~~ 105 (122)
+..+|.++.. +..|||+++-+|+ --...+.+ |+.
T Consensus 19 a~sW~~im~~-l~~HFG~~a~Ld~---~~~~~I~~-YL~ 52 (120)
T PF09626_consen 19 AESWQKIMQD-LDDHFGEDASLDP---ATQAEIWA-YLQ 52 (120)
T ss_dssp HHHHHHHHCG-GGGBTTB-----H---HHHHHHHH-HHH
T ss_pred HHHHHHHHHh-HHHhcCCCCCCCH---HHHHHHHH-HHH
Confidence 4456777764 6789998743333 23344555 554
No 20
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=26.53 E-value=92 Score=24.41 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=26.9
Q ss_pred ccCCCHHHHHHHHH---hhCceeEeeeeeeeeccCCC
Q 038593 15 IYAPYVDEVKQVIE---REGSFDIHQLETFHVSWLEG 48 (122)
Q Consensus 15 ~Y~Ps~eEv~~~Ie---~eGsF~I~~le~~~~~~~d~ 48 (122)
.|.||.++|...++ +.|--.|+-+|++.-.| ..
T Consensus 144 ~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl~R~~-~v 179 (247)
T PF08704_consen 144 CFSPCIEQVQKTVEALREHGFTDIETVEVLLREW-EV 179 (247)
T ss_dssp EEESSHHHHHHHHHHHHHTTEEEEEEEEEEEEEE-EE
T ss_pred EECCCHHHHHHHHHHHHHCCCeeeEEEEEEeeEE-EE
Confidence 58999999998776 46877788899888778 54
No 21
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=26.46 E-value=57 Score=24.08 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCccCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 13 FPIYAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 13 iP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
.+.|.++++|+++++++.| |.|.+.+.+.
T Consensus 180 ~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 180 TSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred cceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 3467889999999999989 9998888664
No 22
>PF09584 Phageshock_PspD: Phage shock protein PspD (Phageshock_PspD); InterPro: IPR014321 Members of this entry are phage shock protein PspD, they are found in a minority of bacteria that carry the defining genes of the phage shock regulon (pspA, pspB, pspC, and pspF). It is found in Escherichia coli, Yersinia pestis, and closely related species, where it is part of the phage shock operon. It is known to be expressed but its function is unknown.
Probab=25.96 E-value=58 Score=20.75 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=12.7
Q ss_pred HHhhHHHHHhhhCChhHHHHHHHHHH
Q 038593 71 RAVGESLLSSICGDDAIVEEIYRRFA 96 (122)
Q Consensus 71 RAv~Epll~~HFG~~~imdeLF~r~~ 96 (122)
.=++||||.. .+..++.||+
T Consensus 46 a~~LEPllrr------~~~~~~~r~~ 65 (66)
T PF09584_consen 46 ALALEPLLRR------GLNKLSRRYA 65 (66)
T ss_pred HHHHHHHHHH------HHHHHHHHhc
Confidence 3456777765 5666666664
No 23
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=25.86 E-value=35 Score=21.43 Aligned_cols=31 Identities=35% Similarity=0.609 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhHHHHHhhhC----ChhHHHHHHHHH
Q 038593 63 GKYVTRHVRAVGESLLSSICG----DDAIVEEIYRRF 95 (122)
Q Consensus 63 g~~va~~iRAv~Epll~~HFG----~~~imdeLF~r~ 95 (122)
...+|-.+|.+.+.| ..-.| ++ |+|.+|++|
T Consensus 38 ~dl~a~~L~~A~~~L-~~ItG~~~~ed-iLd~IFs~F 72 (73)
T PF12631_consen 38 LDLVAEDLREALESL-GEITGEVVTED-ILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHH-HHHCTSS--HH-HHHHHHCTS
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCChHH-HHHHHHHhh
Confidence 456677777776653 33344 45 999999876
No 24
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=25.45 E-value=3.9e+02 Score=22.06 Aligned_cols=83 Identities=12% Similarity=0.184 Sum_probs=44.1
Q ss_pred cCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 038593 16 YAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRF 95 (122)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r~ 95 (122)
+.|+++++.+..+ +.|+|..++.+..++ .. +-..+...+++-.+- +.+-||+. .-.++..|
T Consensus 290 ~lps~~~i~~~~~--~~~~v~d~~~~~~hy-~~-------------TL~~W~~~f~~~~~~-~~~~~~~~--~~r~w~~y 350 (383)
T PRK11705 290 CLPSVRQIAQASE--GLFVMEDWHNFGADY-DR-------------TLMAWHENFEAAWPE-LADNYSER--FYRMWRYY 350 (383)
T ss_pred cCCCHHHHHHHHH--CCcEEEEEecChhhH-HH-------------HHHHHHHHHHHHHHH-HHHhCCHH--HHHHHHHH
Confidence 6899999999866 459998888664333 10 122222223332222 34567765 33455555
Q ss_pred HHHHhhHHHhhcCCCeEEEEEEEee
Q 038593 96 AIKVTDEILEKGRGAFANLLISLVK 120 (122)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~vsL~r 120 (122)
-...+. ....+.....++ .|+|
T Consensus 351 l~~~~~-~F~~~~~~~~q~--~~~~ 372 (383)
T PRK11705 351 LLSCAG-AFRARDIQLWQV--VFSP 372 (383)
T ss_pred HHHHHH-HHhCCCceEEEE--EEEe
Confidence 555555 444444444443 4444
No 25
>PF02095 Extensin_1: Extensin-like protein repeat; InterPro: IPR003883 Extensins are plant cell-wall proteins; they can account for up to 20% of the dry weight of the cell wall. They are highly-glycosylated, possibly reflecting their interactions with cell-wall carbohydrates. Amongst their functions is cell wall strengthening in response to mechanical stress (e.g., during attack by pests, plant-bending in the wind, etc.). This repeat occurs within extensin-like proteins.; GO: 0005199 structural constituent of cell wall
Probab=25.01 E-value=25 Score=14.43 Aligned_cols=8 Identities=50% Similarity=1.194 Sum_probs=5.5
Q ss_pred CccCCCHH
Q 038593 14 PIYAPYVD 21 (122)
Q Consensus 14 P~Y~Ps~e 21 (122)
|+|-|..+
T Consensus 2 P~ykPpve 9 (10)
T PF02095_consen 2 PVYKPPVE 9 (10)
T ss_pred CccCCCcc
Confidence 77877653
No 26
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=23.96 E-value=47 Score=28.02 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=14.1
Q ss_pred CccCCCHHHHHHHHHh
Q 038593 14 PIYAPYVDEVKQVIER 29 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~ 29 (122)
=+|.||.+|+|++++.
T Consensus 363 k~~~~Sv~elR~Ia~d 378 (392)
T PF07340_consen 363 KVCTPSVEELREIAND 378 (392)
T ss_pred cccCCCHHHHHHHhcc
Confidence 4799999999999975
No 27
>COG5423 Predicted metal-binding protein [Function unknown]
Probab=23.62 E-value=77 Score=23.58 Aligned_cols=19 Identities=16% Similarity=0.482 Sum_probs=16.7
Q ss_pred cCCccCCCHHHHHHHHHhh
Q 038593 12 NFPIYAPYVDEVKQVIERE 30 (122)
Q Consensus 12 NiP~Y~Ps~eEv~~~Ie~e 30 (122)
+-|-|.||.+|.++++..=
T Consensus 50 sCPPhvps~~EfreilkeY 68 (167)
T COG5423 50 SCPPHVPSIEEFREILKEY 68 (167)
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 5689999999999999863
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=23.00 E-value=99 Score=22.65 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=24.2
Q ss_pred CCccCCCHHHHHHHHHhhCceeEeeeeeeee
Q 038593 13 FPIYAPYVDEVKQVIEREGSFDIHQLETFHV 43 (122)
Q Consensus 13 iP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~ 43 (122)
++.|.||.+++.+.+++.| |++.+.+.+..
T Consensus 118 ~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~~ 147 (224)
T smart00828 118 TTSYLVTREEWAELLARNN-LRVVEGVDASL 147 (224)
T ss_pred cccccCCHHHHHHHHHHCC-CeEEEeEECcH
Confidence 6678999999999998866 88877776643
No 29
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=22.76 E-value=37 Score=22.51 Aligned_cols=27 Identities=15% Similarity=0.523 Sum_probs=20.8
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHH
Q 038593 1 GLIEESKLKSSNFPIYAPYVDEVKQVIE 28 (122)
Q Consensus 1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie 28 (122)
|.|+++.-|+--.|.|+||.. .|.+|.
T Consensus 27 G~is~~Ecd~Ir~p~~T~sqq-ARrLLD 53 (81)
T cd08788 27 GFFSSYDCDEIRLPIFTPSQQ-ARRLLD 53 (81)
T ss_pred CCccHhhcchhhcCCCChHHH-HHHHHH
Confidence 788899999999999999853 444443
No 30
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=22.45 E-value=69 Score=20.55 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCcee
Q 038593 20 VDEVKQVIEREGSFD 34 (122)
Q Consensus 20 ~eEv~~~Ie~eGsF~ 34 (122)
.+++...|+++|+|.
T Consensus 52 i~~~n~~ve~~G~~~ 66 (72)
T PRK13710 52 MAEVARFIEMNGSFA 66 (72)
T ss_pred HHHHHHHHHHhCCcH
Confidence 567888899999884
No 31
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.32 E-value=1e+02 Score=22.07 Aligned_cols=38 Identities=11% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHHHHHh----hHHHHHhhhCChhHHHHHHHHHHHHHhh
Q 038593 63 GKYVTRHVRAV----GESLLSSICGDDAIVEEIYRRFAIKVTD 101 (122)
Q Consensus 63 g~~va~~iRAv----~Epll~~HFG~~~imdeLF~r~~~~v~~ 101 (122)
-+++.+.+.|+ -.|+|.+|...+ .+.++..+.-+.+.+
T Consensus 39 fqhm~RTlKaFd~WLqdP~ItshMPre-ML~dv~~~~~~il~~ 80 (126)
T PF09921_consen 39 FQHMMRTLKAFDQWLQDPMITSHMPRE-MLEDVWETLREILEQ 80 (126)
T ss_pred HHHHHHHHHHHHHHHcCchhHhcCCHH-HHHHHHHHHHHHHHH
Confidence 34667777775 479999999999 888888888777765
No 32
>TIGR03762 exosort_arch archaeal exosortase. Members of this family are archaeal homologs to bacterial PEP-CTERM-sorting protein exosortase (TIGR02602). Members of this family are found in species with an archaeal variant sorting motif, PEF-CTERM (TIGR03024). Members are found in the thermoacidophilic Aciduliprofundum boonei and the mesophilic psychromethanogens Methanosarcina mazei and Methanococcoides burtonii.
Probab=22.16 E-value=91 Score=25.16 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHHHHhhhCChhHHHHHHHHHH
Q 038593 65 YVTRHVRAVGESLLSSICGDDAIVEEIYRRFA 96 (122)
Q Consensus 65 ~va~~iRAv~Epll~~HFG~~~imdeLF~r~~ 96 (122)
.++|.+|...=.++..|+|.+ .++ .|+-+.
T Consensus 226 ~vaN~lRV~iL~lL~~~~g~E-aae-f~H~~~ 255 (274)
T TIGR03762 226 YIVNLIRVTILYLIAYYYGME-IMQ-LVHTHL 255 (274)
T ss_pred HHHHHHHHHHHHHHHHhcCHH-HHH-HHHcch
Confidence 789999999999999999999 887 765543
No 33
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.59 E-value=68 Score=23.68 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=25.8
Q ss_pred ccccccCccc---CCccCCCHHHHHHHHHhhCceeEe
Q 038593 3 IEESKLKSSN---FPIYAPYVDEVKQVIEREGSFDIH 36 (122)
Q Consensus 3 I~eeklDsFN---iP~Y~Ps~eEv~~~Ie~eGsF~I~ 36 (122)
+++++++..| .|+|-|-.+|+-+-..++|.|...
T Consensus 31 ~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t 67 (185)
T PF03721_consen 31 IDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT 67 (185)
T ss_dssp S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE
T ss_pred CChHHHHHHhhccccccccchhhhhccccccccchhh
Confidence 4566777777 999999999998888878888774
No 34
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=20.89 E-value=1.9e+02 Score=22.71 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=31.2
Q ss_pred cCCCHHHHHHHHHhh-CceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhH
Q 038593 16 YAPYVDEVKQVIERE-GSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGE 75 (122)
Q Consensus 16 Y~Ps~eEv~~~Ie~e-GsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~E 75 (122)
=.+|++||-++|+++ .+-+|.--|.+. .| +++.+.+ ..-.+.+.+|++.+
T Consensus 181 ~~lt~~qV~~VIk~~YdtLsl~~~e~Ld-~~-ery~E~~--------~~~~~k~~~r~~v~ 231 (237)
T PF08427_consen 181 SNLTPEQVLEVIKQNYDTLSLKLQEGLD-QW-ERYREAP--------EKSFLKRIARSAVD 231 (237)
T ss_pred CCCCHHHHHHHHHhCccceecchhhccc-cc-cccccCc--------hHHHHHHHHHHHHH
Confidence 368999999999986 567777666663 23 4443321 23455556666543
No 35
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=20.69 E-value=1.4e+02 Score=18.84 Aligned_cols=21 Identities=14% Similarity=0.379 Sum_probs=19.5
Q ss_pred CHHHHHHHHHhhCceeEeeeee
Q 038593 19 YVDEVKQVIEREGSFDIHQLET 40 (122)
Q Consensus 19 s~eEv~~~Ie~eGsF~I~~le~ 40 (122)
|.+++.+.++..|. +|..+|.
T Consensus 30 ~~~~~~~~l~~~G~-~v~~ve~ 50 (83)
T PF13670_consen 30 SIEQAVAKLEAQGY-QVREVEF 50 (83)
T ss_pred CHHHHHHHHHhcCC-ceEEEEE
Confidence 78999999999999 9999997
No 36
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=20.31 E-value=1.2e+02 Score=22.41 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHhhCceeEeeeeee
Q 038593 17 APYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 17 ~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
.||.+|+++..++.| |++-+++.+
T Consensus 196 ~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 196 FPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred cCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 589999999999999 888777766
No 37
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=20.25 E-value=1.1e+02 Score=26.98 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhhHH-----HHHhhhCC-----hh--HHHHHHHH--HHHHHhhHH---HhhcCCCeEEEEEEEe
Q 038593 62 RGKYVTRHVRAVGES-----LLSSICGD-----DA--IVEEIYRR--FAIKVTDEI---LEKGRGAFANLLISLV 119 (122)
Q Consensus 62 ~g~~va~~iRAv~Ep-----ll~~HFG~-----~~--imdeLF~r--~~~~v~~~~---~~~~~~~~~~~~vsL~ 119 (122)
.-+..++.+|+.++| ||..|.|. ++ |+++|=-. -++.+.. . ...+-+..+++||+|+
T Consensus 34 a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~-a~~~q~~~iGDgtnfvvvla 107 (537)
T KOG0362|consen 34 AVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVE-ATQMQEEEIGDGTNFVVVLA 107 (537)
T ss_pred HHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHH-HHHHHHHhhCCCceEeehhH
Confidence 567899999999998 89999993 11 88876422 2333332 2 2234467888888875
Done!