Query 038593
Match_columns 122
No_of_seqs 107 out of 324
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 21:57:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m6e_X S-adenosyl-L-methionnin 100.0 7E-32 2.4E-36 218.6 12.7 119 1-122 240-358 (359)
2 2efj_A 3,7-dimethylxanthine me 100.0 5E-31 1.7E-35 215.3 13.4 119 1-122 252-379 (384)
3 3b5i_A S-adenosyl-L-methionine 100.0 5.4E-29 1.8E-33 202.5 12.3 113 1-119 258-374 (374)
4 3ccf_A Cyclopropane-fatty-acyl 92.5 1.5 5.2E-05 32.1 10.2 95 11-121 181-278 (279)
5 3bus_A REBM, methyltransferase 87.6 5.6 0.00019 28.7 9.5 66 15-97 191-256 (273)
6 3hem_A Cyclopropane-fatty-acyl 87.5 4.7 0.00016 29.9 9.2 81 16-115 219-299 (302)
7 2yqz_A Hypothetical protein TT 84.2 2 7E-05 30.7 5.5 89 15-121 171-262 (263)
8 3f4k_A Putative methyltransfer 81.7 12 0.0004 26.6 9.1 84 17-121 173-257 (257)
9 2lmc_A Bacterial RNA polymeras 74.2 2.7 9.3E-05 26.8 2.9 34 6-39 42-78 (84)
10 1kpg_A CFA synthase;, cyclopro 66.8 33 0.0011 24.7 8.1 26 16-42 204-229 (287)
11 2p35_A Trans-aconitate 2-methy 65.8 32 0.0011 24.2 10.1 73 14-105 164-238 (259)
12 3hnr_A Probable methyltransfer 47.7 13 0.00046 25.6 2.9 30 15-45 176-205 (220)
13 2fk8_A Methoxy mycolic acid sy 44.6 90 0.0031 22.8 7.8 26 15-41 229-254 (318)
14 3u99_A Diheme cytochrome C; cy 36.3 14 0.00049 25.9 1.5 18 68-86 34-51 (148)
15 3vjj_A P9-1; 3.00A {Rice black 35.0 20 0.00068 28.3 2.2 31 11-41 287-317 (368)
16 3g5l_A Putative S-adenosylmeth 33.1 32 0.0011 24.3 3.0 28 13-41 189-216 (253)
17 1nkv_A Hypothetical protein YJ 31.0 1.3E+02 0.0045 20.8 7.6 23 16-39 163-185 (256)
18 3e8s_A Putative SAM dependent 30.5 38 0.0013 23.0 2.9 27 13-40 182-208 (227)
19 3ujc_A Phosphoethanolamine N-m 30.0 1.4E+02 0.0047 20.7 9.4 84 16-120 182-265 (266)
20 2el8_A Signal-transducing adap 29.7 75 0.0026 20.5 4.2 37 3-39 11-52 (118)
21 1ik9_C DNA ligase IV; DNA END 27.4 48 0.0017 17.6 2.4 22 8-29 11-33 (37)
22 3h2b_A SAM-dependent methyltra 26.4 67 0.0023 21.6 3.6 29 13-42 155-183 (203)
23 2g72_A Phenylethanolamine N-me 26.4 72 0.0025 23.0 4.0 29 14-43 230-258 (289)
24 3ewt_E Tumor necrosis factor r 25.4 38 0.0013 16.8 1.6 13 19-31 12-24 (25)
25 1x4c_A Splicing factor, argini 25.1 95 0.0032 19.1 3.9 28 11-41 21-48 (108)
26 3hpw_C Protein CCDA; alpha+bet 25.1 36 0.0012 18.2 1.5 15 20-34 16-30 (36)
27 3e23_A Uncharacterized protein 24.1 88 0.003 21.2 3.9 34 9-42 150-183 (211)
28 3o59_X DNA polymerase II large 24.0 41 0.0014 26.2 2.2 17 14-30 201-217 (300)
29 1i3z_A EWS/FLI1 activated tran 23.7 56 0.0019 20.3 2.6 28 12-39 2-34 (103)
30 3lcc_A Putative methyl chlorid 23.5 97 0.0033 21.4 4.1 30 12-42 179-208 (235)
31 1jyr_A Growth factor receptor- 23.2 83 0.0028 19.4 3.3 27 13-39 3-34 (96)
32 2a14_A Indolethylamine N-methy 22.6 96 0.0033 22.2 4.0 28 14-42 212-239 (263)
33 3kkz_A Uncharacterized protein 22.4 2.1E+02 0.0071 20.1 9.5 25 16-41 172-196 (267)
34 2o57_A Putative sarcosine dime 22.4 2.2E+02 0.0074 20.3 8.6 24 17-41 211-234 (297)
35 2gb4_A Thiopurine S-methyltran 22.3 94 0.0032 22.5 3.9 26 14-41 202-227 (252)
36 3m5g_A Hemagglutinin; influenz 22.1 68 0.0023 25.3 3.2 33 3-35 82-114 (317)
37 1ri5_A MRNA capping enzyme; me 21.2 67 0.0023 22.9 2.9 28 14-42 224-251 (298)
38 3sm3_A SAM-dependent methyltra 20.4 1.1E+02 0.0039 20.7 3.9 29 15-44 182-210 (235)
39 4htf_A S-adenosylmethionine-de 20.1 1E+02 0.0035 22.0 3.7 28 14-42 206-233 (285)
No 1
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=99.97 E-value=7e-32 Score=218.64 Aligned_cols=119 Identities=34% Similarity=0.603 Sum_probs=107.4
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593 1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS 80 (122)
Q Consensus 1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~ 80 (122)
|+|++||+|+||+|+|.||++|++++|+++|+|+|+++|+++..| ++.+++.+...|....|+.+|+++||++||||.+
T Consensus 240 Gli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~-~~~~~~~d~~~~~~~~g~~~a~~~Ra~~e~ll~~ 318 (359)
T 1m6e_X 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYW-SSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLD 318 (359)
T ss_dssp TCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEET-TCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeecc-CcccchhhhhhhhhHhHhHhhhhhhhhcchhhHH
Confidence 899999999999999999999999999999999999999999999 8765421112234468999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhHHHhhcCCCeEEEEEEEeecC
Q 038593 81 ICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL 122 (122)
Q Consensus 81 HFG~~~imdeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk~ 122 (122)
|||++ |||+||+||++++++ ++..++.++++++++|+||.
T Consensus 319 hfG~~-i~d~lf~ry~~~~~~-~~~~~~~~~~~~~~~L~k~~ 358 (359)
T 1m6e_X 319 HFGEA-IIEDVFHRYKLLIIE-RMSKEKTKFINVIVSLIRKS 358 (359)
T ss_dssp HHCHH-HHHHHHHHHHHHHHH-HHHSSCCEEEEEEEEEEBCC
T ss_pred hccHH-HHHHHHHHHHHHHHH-HHhhCCCceEEEEEEEEeCC
Confidence 99999 999999999999999 98888888999999999984
No 2
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=99.97 E-value=5e-31 Score=215.28 Aligned_cols=119 Identities=39% Similarity=0.625 Sum_probs=105.6
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCC---CCCC---ccc---cchhhhHHHHHHHHH
Q 038593 1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGF---VEND---NEG---LDKYARGKYVTRHVR 71 (122)
Q Consensus 1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~---~~~~---~~~---~d~~~~g~~va~~iR 71 (122)
|+|+++|+|+||+|+|.||++|++++|+++|+|+|+++|+++..| ++. +++. +.. .|....|+++|+++|
T Consensus 252 Gli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~iR 330 (384)
T 2efj_A 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPY-DAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVR 330 (384)
T ss_dssp TSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEET-TTTCCC---------CCSHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecc-cccccccccccccccccccchHhHhHHHhhhhhH
Confidence 899999999999999999999999999999999999999999999 875 3310 111 134568999999999
Q ss_pred HhhHHHHHhhhCChhHHHHHHHHHHHHHhhHHHhhcCCCeEEEEEEEeecC
Q 038593 72 AVGESLLSSICGDDAIVEEIYRRFAIKVTDEILEKGRGAFANLLISLVKKL 122 (122)
Q Consensus 72 Av~Epll~~HFG~~~imdeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk~ 122 (122)
|++||+|.+|||++ |||+||+||++++++ ++..++.++++++++|+||.
T Consensus 331 a~~epll~~hfG~~-i~d~lF~ry~~~~~~-~~~~~~~~~~~~~~~L~k~~ 379 (384)
T 2efj_A 331 SIYEPILASHFGEA-ILPDLSHRIAKNAAK-VLRSGKGFYDSVIISLAKKP 379 (384)
T ss_dssp HHHHHHHHHHHCST-THHHHHHHHHHHHHH-HHHHTCCEEEEEEEEEEECC
T ss_pred HhhhhhhHHhccHH-HHHHHHHHHHHHHHH-HHhhCCCceEEEEEEEEEcc
Confidence 99999999999999 999999999999999 99888889999999999984
No 3
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=99.96 E-value=5.4e-29 Score=202.53 Aligned_cols=113 Identities=22% Similarity=0.363 Sum_probs=101.8
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHh
Q 038593 1 GLIEESKLKSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSS 80 (122)
Q Consensus 1 GlI~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~ 80 (122)
|+|+++++|+||+|+|.||++|++++|+++|+|+|+++|+++.+| ++..+. ..+....|+.+|+++||++||||.+
T Consensus 258 G~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~-~~~~~~---~~~~~~~g~~~a~~~Ra~~e~ll~~ 333 (374)
T 3b5i_A 258 GLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGS-PLVVNE---PDDASEVGRAFASSCRSVAGVLVEA 333 (374)
T ss_dssp SSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCC-CCCCSS---TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecC-Cccccc---cchhHHHHHHHHHHHHHhccchhHh
Confidence 889999999999999999999999999999999999999999999 775432 1233458999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhHHHh--hcCCC--eEEEEEEEe
Q 038593 81 ICGDDAIVEEIYRRFAIKVTDEILE--KGRGA--FANLLISLV 119 (122)
Q Consensus 81 HFG~~~imdeLF~r~~~~v~~~~~~--~~~~~--~~~~~vsL~ 119 (122)
|||++ |||+||+||++++++ +++ .++.+ ++++++||+
T Consensus 334 hfg~~-i~d~lf~ry~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 374 (374)
T 3b5i_A 334 HIGEE-LSNKLFSRVESRATS-HAKDVLVNLQFFHIVASLSFT 374 (374)
T ss_dssp TSCHH-HHHHHHHHHHHHHHH-TCHHHHTTCCCEEEEEEEEEC
T ss_pred hccHH-HHHHHHHHHHHHHHH-hHHHhhhccccceEEEEEEeC
Confidence 99999 999999999999999 877 66777 899999985
No 4
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=92.53 E-value=1.5 Score=32.15 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=59.0
Q ss_pred ccCCccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHH
Q 038593 11 SNFPIYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEE 90 (122)
Q Consensus 11 FNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imde 90 (122)
+.-|.+.++.+++++++++.| |++.+++.+...+ .. .. +...+...+++...|++. ..+++ -.++
T Consensus 181 ~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~-~~-~~----------~~~~~~~~l~~~~~~~~~-~~~~~-~~~~ 245 (279)
T 3ccf_A 181 ALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPT-TL-AE----------GEFGMANWIQMFASAFLV-GLTPD-QQVQ 245 (279)
T ss_dssp GGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCE-EC-SS----------GGGHHHHHHHHHCHHHHT-TCCHH-HHHH
T ss_pred CcCceeCCCHHHHHHHHHHcC-CEEEEEEEecccc-cc-cC----------CHHHHHHHHHHhhHHHhc-cCCHH-HHHH
Confidence 455778899999999999999 9998888775443 11 00 112334455555555553 46667 7788
Q ss_pred HHHHHHHHHhhHHHhhcC---CCeEEEEEEEeec
Q 038593 91 IYRRFAIKVTDEILEKGR---GAFANLLISLVKK 121 (122)
Q Consensus 91 LF~r~~~~v~~~~~~~~~---~~~~~~~vsL~rk 121 (122)
+..++.+.+.+ +..... ..+..+++..+|+
T Consensus 246 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~v~a~Kp 278 (279)
T 3ccf_A 246 LIRKVEATLQD-KLYHQESWTADYRRIRIVSIKA 278 (279)
T ss_dssp HHHHHHHHHHH-HHEETTEEEECCEEEEEEEEEC
T ss_pred HHHHHHHHHHh-hccCCCcEEEEEEEEEEEEecC
Confidence 88888777766 543221 1234455555553
No 5
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=87.60 E-value=5.6 Score=28.68 Aligned_cols=66 Identities=6% Similarity=0.046 Sum_probs=41.9
Q ss_pred ccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHH
Q 038593 15 IYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRR 94 (122)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r 94 (122)
.+.++.+++++++++.| |++.+.+.+...+ .+ .-..+...+++..+. +..++|++ ..+.+...
T Consensus 191 ~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ 253 (273)
T 3bus_A 191 LSLGGIDEYESDVRQAE-LVVTSTVDISAQA-RP-------------SLVKTAEAFENARSQ-VEPFMGAE-GLDRMIAT 253 (273)
T ss_dssp CCCCCHHHHHHHHHHTT-CEEEEEEECHHHH-TT-------------HHHHHHHHHHHTHHH-HHHHHCHH-HHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcC-CeEEEEEECcHhH-HH-------------HHHHHHHHHHHhHHH-HHhhcCHH-HHHHHHHH
Confidence 35689999999999998 8888887664332 11 112233333444444 45678988 77776666
Q ss_pred HHH
Q 038593 95 FAI 97 (122)
Q Consensus 95 ~~~ 97 (122)
+..
T Consensus 254 ~~~ 256 (273)
T 3bus_A 254 FRG 256 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 6
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=87.52 E-value=4.7 Score=29.89 Aligned_cols=81 Identities=10% Similarity=0.226 Sum_probs=46.6
Q ss_pred cCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 038593 16 YAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRF 95 (122)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r~ 95 (122)
+.||++++.+.+++.| |++..++.+...+ . ..-..+...+++..+. +.+.||++ ..+ +|..|
T Consensus 219 ~~~s~~~~~~~l~~aG-f~~~~~~~~~~~y-~-------------~tl~~w~~~~~~~~~~-~~~~~~~~-~~~-~w~~y 280 (302)
T 3hem_A 219 RLPRISQVDYYSSNAG-WKVERYHRIGANY-V-------------PTLNAWADALQAHKDE-AIALKGQE-TCD-IYMHY 280 (302)
T ss_dssp CCCCHHHHHHHHHHHT-CEEEEEEECGGGH-H-------------HHHHHHHHHHHHTHHH-HHHHHCHH-HHH-HHHHH
T ss_pred CCCCHHHHHHHHHhCC-cEEEEEEeCchhH-H-------------HHHHHHHHHHHHhHHH-HHHHhCHH-HHH-HHHHH
Confidence 7899999999999988 8888887663322 0 0122233333333333 34558877 554 46666
Q ss_pred HHHHhhHHHhhcCCCeEEEE
Q 038593 96 AIKVTDEILEKGRGAFANLL 115 (122)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~ 115 (122)
-...+. ..+.+.....+++
T Consensus 281 l~~~~~-~f~~~~~~~~q~~ 299 (302)
T 3hem_A 281 LRGCSD-LFRDKYTDVCQFT 299 (302)
T ss_dssp HHHHHH-HHHTTSSEEEEEE
T ss_pred HHHHHH-HHhCCCCeEEEEE
Confidence 555555 4454444444433
No 7
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=84.24 E-value=2 Score=30.69 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=53.7
Q ss_pred ccCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHH
Q 038593 15 IYAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRR 94 (122)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r 94 (122)
.+.++.+++++++++.| |++...+.. .| .. . .+...+...+++.+.|.+ .+.+++ ..+++..+
T Consensus 171 ~~~~~~~~~~~~l~~~G-f~~~~~~~~--~~-~~---~--------~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 233 (263)
T 2yqz_A 171 LHAKRLKEVEEALRRLG-LKPRTREVA--RW-RE---E--------RTPREALEALSERLYSFT-QGLPEP-VHARVMER 233 (263)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCEEEEEE--EE-EE---E--------ECHHHHHHHHHTTCSGGG-SSSCHH-HHHHHHHH
T ss_pred cccCCHHHHHHHHHHcC-CCcceEEEe--ee-ec---C--------CCHHHHHHHHHHhhcccc-cCCCHH-HHHHHHHH
Confidence 34568999999999998 887766544 33 11 0 123444455555444443 467777 78888888
Q ss_pred HHHHHhhHHHhhcC---CCeEEEEEEEeec
Q 038593 95 FAIKVTDEILEKGR---GAFANLLISLVKK 121 (122)
Q Consensus 95 ~~~~v~~~~~~~~~---~~~~~~~vsL~rk 121 (122)
+.+.+.+ ...... .-...+++..-||
T Consensus 234 ~~~~l~~-~~~~~~~~~~~~~~~~~~~~rk 262 (263)
T 2yqz_A 234 LWAWAEA-ELGDLDRPFPVEKRFLLRVSRL 262 (263)
T ss_dssp HHHHHHH-HSSCTTSCEEEEEEEEEEEEEC
T ss_pred HHHHHHH-hcCCcCccccccceeEEEeeec
Confidence 8888777 543222 2234555555555
No 8
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=81.72 E-value=12 Score=26.58 Aligned_cols=84 Identities=10% Similarity=0.145 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHhhCceeEeeeeeee-eccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 038593 17 APYVDEVKQVIEREGSFDIHQLETFH-VSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRF 95 (122)
Q Consensus 17 ~Ps~eEv~~~Ie~eGsF~I~~le~~~-~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r~ 95 (122)
.++.+++.+++++.| |++.....+. ..| .. . .....+...+.+...|-+.. ..+++-++.
T Consensus 173 ~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w-~~---~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 233 (257)
T 3f4k_A 173 ISVIPTCIDKMERAG-YTPTAHFILPENCW-TE---H-------------YFAPQDEVRETFMKEHAGNK-TAMDFMKGQ 233 (257)
T ss_dssp CCBHHHHHHHHHHTT-EEEEEEEECCGGGT-CC---C-------------CCHHHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHCC-CeEEEEEECChhhH-HH---H-------------HHHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Confidence 568999999999988 8877765442 223 11 0 11123334455566677777 777777776
Q ss_pred HHHHhhHHHhhcCCCeEEEEEEEeec
Q 038593 96 AIKVTDEILEKGRGAFANLLISLVKK 121 (122)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~vsL~rk 121 (122)
...... +... ...+...++.++|+
T Consensus 234 ~~~~~~-~~~~-~~~~g~~~~v~~k~ 257 (257)
T 3f4k_A 234 QYERSL-YSKY-KDYYGYVFYIGQKR 257 (257)
T ss_dssp HHHHHH-HHHH-TTTEEEEEEEEEEC
T ss_pred HHHHHH-HHHh-CCccceEEEEEecC
Confidence 666554 4222 44455666666664
No 9
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=74.21 E-value=2.7 Score=26.83 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=29.0
Q ss_pred cccCcccCCccCCCHHHHHHHHH---hhCceeEeeee
Q 038593 6 SKLKSSNFPIYAPYVDEVKQVIE---REGSFDIHQLE 39 (122)
Q Consensus 6 eklDsFNiP~Y~Ps~eEv~~~Ie---~eGsF~I~~le 39 (122)
.+..||-+|+|+-|.+|--++-| .+--|.+.|+.
T Consensus 42 g~~~s~EVPV~A~sLdEAlE~AE~eYeeaGF~V~RVR 78 (84)
T 2lmc_A 42 SSEHSFEVPIYAETLDEALELAEWQYVPAGFEVTRVR 78 (84)
T ss_dssp CSSCEEEEEECCSSHHHHHHHHHHTTGGGTCEEEEEE
T ss_pred cccceEEEeeecccHHHHHHHHHHHhhhccceEEEec
Confidence 46679999999999999988888 45778999886
No 10
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=66.76 E-value=33 Score=24.72 Aligned_cols=26 Identities=15% Similarity=0.456 Sum_probs=21.1
Q ss_pred cCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 16 YAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
+.||++++++++++.| |++.+.+.+.
T Consensus 204 ~~~s~~~~~~~l~~aG-f~~~~~~~~~ 229 (287)
T 1kpg_A 204 RLPSIPMVQECASANG-FTVTRVQSLQ 229 (287)
T ss_dssp CCCCHHHHHHHHHTTT-CEEEEEEECH
T ss_pred CCCCHHHHHHHHHhCC-cEEEEEEeCc
Confidence 4579999999999877 8888877653
No 11
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=65.81 E-value=32 Score=24.17 Aligned_cols=73 Identities=8% Similarity=0.123 Sum_probs=47.0
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeee-eeccCCCCCCCCccccchhhhHHHHHHHHHHh-hHHHHHhhhCChhHHHHH
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETF-HVSWLEGFVENDNEGLDKYARGKYVTRHVRAV-GESLLSSICGDDAIVEEI 91 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~-~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv-~Epll~~HFG~~~imdeL 91 (122)
+...++++++++++++.| |.|+..+.. ...+ .+...+...+++. +.+.+ .+++++ -.+.+
T Consensus 164 ~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~~~ 225 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKS-SRVDVWHTVYNHPM---------------KDADSIVEWVKGTGLRPYL-AAAGEE-NREAF 225 (259)
T ss_dssp -CCCCCHHHHHHHHGGGE-EEEEEEEEEEEEEE---------------SCHHHHHHHHTTTTTTHHH-HTTCGG-GHHHH
T ss_pred ccCCCCHHHHHHHHHhcC-CceEEEEEEeeecc---------------CCchHHhhhhhcCcchHHH-HhCCHH-HHHHH
Confidence 456689999999999988 677655532 1111 0234455556654 33444 467777 78888
Q ss_pred HHHHHHHHhhHHHh
Q 038593 92 YRRFAIKVTDEILE 105 (122)
Q Consensus 92 F~r~~~~v~~~~~~ 105 (122)
..++.+.+.+ ++.
T Consensus 226 ~~~~~~~~~~-~~~ 238 (259)
T 2p35_A 226 LADYTRRIAA-AYP 238 (259)
T ss_dssp HHHHHHHHHH-HSC
T ss_pred HHHHHHHHHH-hCC
Confidence 8888888876 544
No 12
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=47.75 E-value=13 Score=25.59 Aligned_cols=30 Identities=20% Similarity=0.467 Sum_probs=25.3
Q ss_pred ccCCCHHHHHHHHHhhCceeEeeeeeeeecc
Q 038593 15 IYAPYVDEVKQVIEREGSFDIHQLETFHVSW 45 (122)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~ 45 (122)
.|.|+.+++++++++.| |+|...+.....|
T Consensus 176 ~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~w 205 (220)
T 3hnr_A 176 EYYTRIPVMQTIFENNG-FHVTFTRLNHFVW 205 (220)
T ss_dssp SCCCBHHHHHHHHHHTT-EEEEEEECSSSEE
T ss_pred hhcCCHHHHHHHHHHCC-CEEEEeeccceEE
Confidence 46789999999999998 6998888776666
No 13
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=44.56 E-value=90 Score=22.81 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=20.7
Q ss_pred ccCCCHHHHHHHHHhhCceeEeeeeee
Q 038593 15 IYAPYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
.+.||.+++++++++.| |++.+.+.+
T Consensus 229 ~~~~s~~~~~~~l~~aG-f~~~~~~~~ 254 (318)
T 2fk8_A 229 GRLPSTEMMVEHGEKAG-FTVPEPLSL 254 (318)
T ss_dssp CCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred CcCCCHHHHHHHHHhCC-CEEEEEEec
Confidence 35689999999999877 777776655
No 14
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=36.25 E-value=14 Score=25.89 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=12.4
Q ss_pred HHHHHhhHHHHHhhhCChh
Q 038593 68 RHVRAVGESLLSSICGDDA 86 (122)
Q Consensus 68 ~~iRAv~Epll~~HFG~~~ 86 (122)
..+|.++.. |..|||+++
T Consensus 34 ~SW~~im~~-L~~HFG~da 51 (148)
T 3u99_A 34 DKWRAITAN-LENHFGDNA 51 (148)
T ss_dssp HHHHHHHTT-TTSBTTBCC
T ss_pred HHHHHHHHh-HHHhcCCCc
Confidence 445666654 789999764
No 15
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=35.03 E-value=20 Score=28.29 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=23.4
Q ss_pred ccCCccCCCHHHHHHHHHhhCceeEeeeeee
Q 038593 11 SNFPIYAPYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 11 FNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
|-+|--.-.++++++.|.++|.|++-.....
T Consensus 287 fqL~Slistp~~I~e~i~K~GLFk~it~~~~ 317 (368)
T 3vjj_A 287 FQLSSLISTPALIREKIAKEGLFKIITSNTL 317 (368)
T ss_dssp HHCSSCCCCCHHHHHHHHHSCSEEECC----
T ss_pred HHhhhhccChHHHHHHHHhcCceEEEecccc
Confidence 4566677789999999999999999777655
No 16
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=33.10 E-value=32 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.1
Q ss_pred CCccCCCHHHHHHHHHhhCceeEeeeeee
Q 038593 13 FPIYAPYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 13 iP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
...|..|.+|+++++++.| |++.+++..
T Consensus 189 ~~~~~~t~~~~~~~l~~aG-F~~~~~~e~ 216 (253)
T 3g5l_A 189 VQKYHRTVTTYIQTLLKNG-FQINSVIEP 216 (253)
T ss_dssp EEEECCCHHHHHHHHHHTT-EEEEEEECC
T ss_pred CccEecCHHHHHHHHHHcC-CeeeeeecC
Confidence 4466779999999999999 998887744
No 17
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=31.00 E-value=1.3e+02 Score=20.80 Aligned_cols=23 Identities=9% Similarity=0.160 Sum_probs=18.2
Q ss_pred cCCCHHHHHHHHHhhCceeEeeee
Q 038593 16 YAPYVDEVKQVIEREGSFDIHQLE 39 (122)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le 39 (122)
+.++.+++.+++++.| |++.++.
T Consensus 163 ~~~~~~~~~~~l~~aG-f~~~~~~ 185 (256)
T 1nkv_A 163 DFLTLPGLVGAFDDLG-YDVVEMV 185 (256)
T ss_dssp GSCCHHHHHHHHHTTT-BCCCEEE
T ss_pred ccCCHHHHHHHHHHCC-CeeEEEE
Confidence 5679999999999988 6665544
No 18
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=30.53 E-value=38 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=22.6
Q ss_pred CCccCCCHHHHHHHHHhhCceeEeeeee
Q 038593 13 FPIYAPYVDEVKQVIEREGSFDIHQLET 40 (122)
Q Consensus 13 iP~Y~Ps~eEv~~~Ie~eGsF~I~~le~ 40 (122)
.+.|..+.+++++++++.| |++.+++.
T Consensus 182 ~~~~~~~~~~~~~~l~~aG-f~~~~~~~ 208 (227)
T 3e8s_A 182 MPWYFRTLASWLNALDMAG-LRLVSLQE 208 (227)
T ss_dssp EEEEECCHHHHHHHHHHTT-EEEEEEEC
T ss_pred ceEEEecHHHHHHHHHHcC-CeEEEEec
Confidence 4567789999999999888 88888775
No 19
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=30.02 E-value=1.4e+02 Score=20.69 Aligned_cols=84 Identities=11% Similarity=0.062 Sum_probs=44.8
Q ss_pred cCCCHHHHHHHHHhhCceeEeeeeeeeeccCCCCCCCCccccchhhhHHHHHHHHHHhhHHHHHhhhCChhHHHHHHHHH
Q 038593 16 YAPYVDEVKQVIEREGSFDIHQLETFHVSWLEGFVENDNEGLDKYARGKYVTRHVRAVGESLLSSICGDDAIVEEIYRRF 95 (122)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~d~~~~~~~~~~d~~~~g~~va~~iRAv~Epll~~HFG~~~imdeLF~r~ 95 (122)
..++.+++++++++.| |++.+.+.+...+ . .....+...+++..+.+ .+.+|++ ..+.+-...
T Consensus 182 ~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 244 (266)
T 3ujc_A 182 TLITVEEYADILTACN-FKNVVSKDLSDYW-N-------------QLLEVEHKYLHENKEEF-LKLFSEK-KFISLDDGW 244 (266)
T ss_dssp CCCCHHHHHHHHHHTT-CEEEEEEECHHHH-H-------------HHHHHHHHHHHHTHHHH-HHHSCHH-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcC-CeEEEEEeCCHHH-H-------------HHHHHHHHHHHhCHHHH-HHhcCHH-HHHHHHHHH
Confidence 4679999999999887 7776666553222 0 01111222223333333 3447777 666666666
Q ss_pred HHHHhhHHHhhcCCCeEEEEEEEee
Q 038593 96 AIKVTDEILEKGRGAFANLLISLVK 120 (122)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~vsL~r 120 (122)
...+.. +. ......-+++.+|
T Consensus 245 ~~~~~~-~~---~g~~~w~~~~~~K 265 (266)
T 3ujc_A 245 SRKIKD-SK---RKMQRWGYFKATK 265 (266)
T ss_dssp HHHHHH-HH---TTSEEEEEEEEEC
T ss_pred HHHHHH-HH---cCcccceEEEEeC
Confidence 655544 22 2333444445444
No 20
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=29.66 E-value=75 Score=20.54 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=27.7
Q ss_pred ccccccCcccCCccCC--CHHHHHHHHHh---hCceeEeeee
Q 038593 3 IEESKLKSSNFPIYAP--YVDEVKQVIER---EGSFDIHQLE 39 (122)
Q Consensus 3 I~eeklDsFNiP~Y~P--s~eEv~~~Ie~---eGsF~I~~le 39 (122)
..|.+.+-=+.|.|.. |-+|.++++.+ +|+|-|-.-+
T Consensus 11 ~~e~~r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~ 52 (118)
T 2el8_A 11 AKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSG 52 (118)
T ss_dssp CSCCCCCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECC
T ss_pred HHHHhccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCC
Confidence 3445555567888887 77899988865 8999997665
No 21
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=27.43 E-value=48 Score=17.64 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=13.6
Q ss_pred cCcccCCccCC-CHHHHHHHHHh
Q 038593 8 LKSSNFPIYAP-YVDEVKQVIER 29 (122)
Q Consensus 8 lDsFNiP~Y~P-s~eEv~~~Ie~ 29 (122)
+|-|+=++..| +++|+|.++.+
T Consensus 11 ~D~yGDSY~rd~t~~eLk~il~~ 33 (37)
T 1ik9_C 11 YDCYGDSYFIDTDLNQLKEVFSG 33 (37)
T ss_dssp BCTTSCBSSSCCCHHHHHHHHHT
T ss_pred cccccccccCcCCHHHHHHHHHH
Confidence 34444333333 79999998864
No 22
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=26.41 E-value=67 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCccCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 13 FPIYAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 13 iP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
.+.+..+.+++++++++.| |++.+++.+.
T Consensus 155 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 183 (203)
T 3h2b_A 155 ATAYRWPLPELAQALETAG-FQVTSSHWDP 183 (203)
T ss_dssp SCEEECCHHHHHHHHHHTT-EEEEEEEECT
T ss_pred hhhccCCHHHHHHHHHHCC-CcEEEEEecC
Confidence 3556789999999999988 9999888763
No 23
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=26.37 E-value=72 Score=23.03 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=24.2
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeeeee
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETFHV 43 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~ 43 (122)
|.+..+.+++++++++.| |++.+++.+..
T Consensus 230 ~~~~~~~~~l~~~l~~aG-f~~~~~~~~~~ 258 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSG-YKVRDLRTYIM 258 (289)
T ss_dssp ECCCCCHHHHHHHHHHTT-EEEEEEEEEEC
T ss_pred eeccCCHHHHHHHHHHcC-CeEEEeeEeec
Confidence 456779999999999888 89988887753
No 24
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=25.43 E-value=38 Score=16.77 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.3
Q ss_pred CHHHHHHHHHhhC
Q 038593 19 YVDEVKQVIEREG 31 (122)
Q Consensus 19 s~eEv~~~Ie~eG 31 (122)
...||++.++++|
T Consensus 12 ~~~~Vk~fvR~~g 24 (25)
T 3ewt_E 12 TLSQVKGFVRKNG 24 (26)
T ss_pred hHHHHHHHHHHcC
Confidence 3568889999887
No 25
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.08 E-value=95 Score=19.06 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=21.6
Q ss_pred ccCCccCCCHHHHHHHHHhhCceeEeeeeee
Q 038593 11 SNFPIYAPYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 11 FNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
-||| +.-+.++|+++..+-| .|..+.+.
T Consensus 21 ~nLp-~~~t~~~l~~~F~~~G--~i~~~~i~ 48 (108)
T 1x4c_A 21 SGLP-PSGSWQDLKDHMREAG--DVCYADVY 48 (108)
T ss_dssp ESCC-SSCCHHHHHHHHGGGS--CEEEEEEE
T ss_pred eCCC-CCCCHHHHHHHHHhcC--CEeEEEEe
Confidence 4888 6779999999999988 46555544
No 26
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=25.07 E-value=36 Score=18.20 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhCcee
Q 038593 20 VDEVKQVIEREGSFD 34 (122)
Q Consensus 20 ~eEv~~~Ie~eGsF~ 34 (122)
+++..+.|+++|+|.
T Consensus 16 i~~~N~~ve~~Gl~~ 30 (36)
T 3hpw_C 16 MAEVARFIEMNGSFA 30 (36)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHcCCCH
Confidence 466778899999884
No 27
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=24.10 E-value=88 Score=21.16 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=26.7
Q ss_pred CcccCCccCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 9 KSSNFPIYAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 9 DsFNiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
+.+.-.....+.+++++++++.|.|++.+++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 150 DKLARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp CTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred cccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 3444455667999999999999989998888663
No 28
>3o59_X DNA polymerase II large subunit; alpha helical structure, transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Probab=23.97 E-value=41 Score=26.25 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.6
Q ss_pred CccCCCHHHHHHHHHhh
Q 038593 14 PIYAPYVDEVKQVIERE 30 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~e 30 (122)
=.|.||++|++-+++..
T Consensus 201 lQY~P~~~Eir~iv~n~ 217 (300)
T 3o59_X 201 LQYHPSPEEVRLAMRNI 217 (300)
T ss_dssp CSSCCCHHHHHHHHHHC
T ss_pred cccCCCHHHHHHHHHcC
Confidence 37999999999999863
No 29
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=23.68 E-value=56 Score=20.27 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=21.7
Q ss_pred cCCccCC--CHHHHHHHHHh---hCceeEeeee
Q 038593 12 NFPIYAP--YVDEVKQVIER---EGSFDIHQLE 39 (122)
Q Consensus 12 NiP~Y~P--s~eEv~~~Ie~---eGsF~I~~le 39 (122)
+.|.|.. |-+|.++++.+ +|+|-|-.-+
T Consensus 2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~ 34 (103)
T 1i3z_A 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSE 34 (103)
T ss_dssp CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECS
T ss_pred CCccccCCCCHHHHHHHHhhcCCCceEEEEeCC
Confidence 4567765 77899999976 8999997665
No 30
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=23.54 E-value=97 Score=21.39 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=24.8
Q ss_pred cCCccCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 12 NFPIYAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 12 NiP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
.-|.|..+.+++++++++.| |++..++...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 208 (235)
T 3lcc_A 179 GGPPYKVDVSTFEEVLVPIG-FKAVSVEENP 208 (235)
T ss_dssp SCSSCCCCHHHHHHHHGGGT-EEEEEEEECT
T ss_pred CCCCccCCHHHHHHHHHHcC-CeEEEEEecC
Confidence 34667789999999999887 8888888764
No 31
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=23.18 E-value=83 Score=19.40 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCccCC--CHHHHHHHHHh---hCceeEeeee
Q 038593 13 FPIYAP--YVDEVKQVIER---EGSFDIHQLE 39 (122)
Q Consensus 13 iP~Y~P--s~eEv~~~Ie~---eGsF~I~~le 39 (122)
.|.|.. |-+|.++++.. +|+|-|-.-+
T Consensus 3 ~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~ 34 (96)
T 1jyr_A 3 MAWFFGKIPRAKAEEMLSKQRHDGAFLIRESE 34 (96)
T ss_dssp CTTBCCSCCHHHHHHHHHTCCSTTBEEEEECS
T ss_pred cceeccCCCHHHHHHHHhcCCCCcEEEEEecC
Confidence 467765 77899999987 8999997654
No 32
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=22.55 E-value=96 Score=22.20 Aligned_cols=28 Identities=36% Similarity=0.328 Sum_probs=22.9
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
+.|.-+.+|+++.+++.| |+|.+++...
T Consensus 212 ~~~~~~~~~l~~~l~~aG-F~i~~~~~~~ 239 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAG-FDIEQLLHSP 239 (263)
T ss_dssp ECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred eccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence 445559999999999999 9998888763
No 33
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=22.41 E-value=2.1e+02 Score=20.11 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=20.8
Q ss_pred cCCCHHHHHHHHHhhCceeEeeeeee
Q 038593 16 YAPYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
..++.+++.+++++.| |++...+.+
T Consensus 172 ~~~~~~~~~~~l~~aG-f~~v~~~~~ 196 (267)
T 3kkz_A 172 EIDTIPNQVAKIHKAG-YLPVATFIL 196 (267)
T ss_dssp TCEEHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence 4579999999999999 888777665
No 34
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=22.37 E-value=2.2e+02 Score=20.32 Aligned_cols=24 Identities=4% Similarity=-0.079 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhhCceeEeeeeee
Q 038593 17 APYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 17 ~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
.++++++++++++.| |++.+.+.+
T Consensus 211 ~~~~~~~~~~l~~aG-f~~~~~~~~ 234 (297)
T 2o57_A 211 MGSLGLYRSLAKECG-LVTLRTFSR 234 (297)
T ss_dssp CCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCHHHHHHHHHHCC-CeEEEEEEC
Confidence 569999999999988 888777655
No 35
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=22.26 E-value=94 Score=22.55 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.8
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeee
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETF 41 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (122)
|.|..+++|+++.... + |+|..++..
T Consensus 202 ~~~~~~~~el~~~l~~-~-f~v~~~~~~ 227 (252)
T 2gb4_A 202 PPFYVPSAELKRLFGT-K-CSMQCLEEV 227 (252)
T ss_dssp SSCCCCHHHHHHHHTT-T-EEEEEEEEE
T ss_pred CCCCCCHHHHHHHhhC-C-eEEEEEecc
Confidence 5566799999999987 4 999999866
No 36
>3m5g_A Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3m5h_A* 3m5i_A* 3m5j_A* 4dj6_A* 4dj7_A* 4dj8_A* 4fqv_A 1ti8_A*
Probab=22.07 E-value=68 Score=25.26 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=25.1
Q ss_pred ccccccCcccCCccCCCHHHHHHHHHhhCceeE
Q 038593 3 IEESKLKSSNFPIYAPYVDEVKQVIEREGSFDI 35 (122)
Q Consensus 3 I~eeklDsFNiP~Y~Ps~eEv~~~Ie~eGsF~I 35 (122)
||...-++--.|-..+..||||+++-.-|+|+|
T Consensus 82 VEr~~ang~CYPG~~~d~eeLR~l~ss~~~~e~ 114 (317)
T 3m5g_A 82 IERREGTDICYPGRFTNEESLRQILRRSGGIGK 114 (317)
T ss_dssp EECTTCBSCSSSCCBTTHHHHHHHHHTSCEEEE
T ss_pred EEccCCCCCcCCCccCCHHHHHHHHhcCCceEe
Confidence 343333445578888999999999999999764
No 37
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=21.20 E-value=67 Score=22.91 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=22.4
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
|.+..+++|+++++++.| |++.+.+.+.
T Consensus 224 ~~~~~~~~~l~~ll~~aG-f~~v~~~~~~ 251 (298)
T 1ri5_A 224 IEYFVDFTRMVDGFKRLG-LSLVERKGFI 251 (298)
T ss_dssp EEECCCHHHHHHHHHTTT-EEEEEEEEHH
T ss_pred cccccCHHHHHHHHHHcC-CEEEEecCHH
Confidence 346678999999999988 8887777663
No 38
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=20.36 E-value=1.1e+02 Score=20.65 Aligned_cols=29 Identities=10% Similarity=0.052 Sum_probs=23.3
Q ss_pred ccCCCHHHHHHHHHhhCceeEeeeeeeeec
Q 038593 15 IYAPYVDEVKQVIEREGSFDIHQLETFHVS 44 (122)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~ 44 (122)
.+..+.+|+++++++.| |++..++.....
T Consensus 182 ~~~~~~~~l~~ll~~aG-f~~~~~~~~~~~ 210 (235)
T 3sm3_A 182 AHHFTEKELVFLLTDCR-FEIDYFRVKELE 210 (235)
T ss_dssp EECBCHHHHHHHHHTTT-EEEEEEEEEEEE
T ss_pred eEeCCHHHHHHHHHHcC-CEEEEEEeccee
Confidence 45779999999999887 888888866433
No 39
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=20.14 E-value=1e+02 Score=22.04 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=22.9
Q ss_pred CccCCCHHHHHHHHHhhCceeEeeeeeee
Q 038593 14 PIYAPYVDEVKQVIEREGSFDIHQLETFH 42 (122)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (122)
|.+..+++|+++++++.| |+|.+.+.+.
T Consensus 206 ~~~~~~~~~l~~~l~~aG-f~v~~~~~~~ 233 (285)
T 4htf_A 206 PDYPRDPTQVYLWLEEAG-WQIMGKTGVR 233 (285)
T ss_dssp CSCCBCHHHHHHHHHHTT-CEEEEEEEES
T ss_pred CCCCCCHHHHHHHHHHCC-CceeeeeeEE
Confidence 456679999999999887 8888887664
Done!