BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038595
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YX0|A Chain A, Crystal Structure Of P. Horikoshii Tyw1
Length = 342
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 118/234 (50%), Gaps = 40/234 (17%)
Query: 306 LEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLA-CANKCVF 364
KQ Y+I+G HSGVK+C W K L CYK FYGI SHRC++ TP LA C + C+F
Sbjct: 28 FRKQHYEIVGRHSGVKLCHWLKKSLTEGRFCYKQKFYGIHSHRCLQMTPVLAWCTHNCIF 87
Query: 365 CWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVS 424
CWR N +G DDP IV +I K++ KG P
Sbjct: 88 CWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNP------------------ 129
Query: 425 SAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRIS 484
+DK+ + E P H A+SL GEP++YP + LV+E H+R +
Sbjct: 130 -KVDKK----------------KFEEAWNPTHAAISLSGEPMLYPYMGDLVEEFHKRGFT 172
Query: 485 TFLVTNAQFPDK----IKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534
TF+VTN P++ IK K TQLYVS+ A ++ +++ P+ D WER L
Sbjct: 173 TFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERIL 226
>pdb|2Z2U|A Chain A, Crystal Structure Of Archaeal Tyw1
Length = 311
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 121/248 (48%), Gaps = 52/248 (20%)
Query: 297 MVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSL 356
M+ I L KQ Y+I G H+ VK+C W + ++ CYK FYGIE+HRC++ TPS+
Sbjct: 1 MIPEEIYKILRKQRYQIDG-HTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSV 59
Query: 357 A-CANKCVFCWRHHTNPVG------KSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEY 409
C C+FCWR +G K +W ++P + + +H ++I GV
Sbjct: 60 IWCQQNCIFCWRVLPRDIGIDISQIKEPKW--EEPEVVYEKILAMHKRIIMGYAGV---- 113
Query: 410 SIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP 469
LD GE+K E L P+H A+SL GEP +YP
Sbjct: 114 -----LDRV-----------------GEKK--------FKEALEPKHVAISLSGEPTLYP 143
Query: 470 EINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFG-- 527
++ L+ H+ +TF+V+N D I+ ++P TQLY+S+DA DS R + G
Sbjct: 144 YLDELIKIFHKNGFTTFVVSNGILTDVIEKIEP-TQLYISLDAYDLDSY----RRICGGK 198
Query: 528 -DFWERFL 534
++WE L
Sbjct: 199 KEYWESIL 206
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ALV+ +++
Sbjct: 23 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 82
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D LS KFAVFG+G+K+YE FN + K + K++
Sbjct: 83 EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 134
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 135 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 163
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ALV+ +++
Sbjct: 23 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 82
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D LS KFAVFG+G+K+YE FN + K + K++
Sbjct: 83 EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 134
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 135 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 163
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ALV+ +++
Sbjct: 23 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 82
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D LS KFAVFG+G+K+YE FN + K + K++
Sbjct: 83 EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 134
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 135 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 163
>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human
Cytochrome P450 Reductase At 1.93a Resolution
Length = 181
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ALV+ +++
Sbjct: 22 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 81
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D LS KFAVFG+G+K+YE FN + K + K++
Sbjct: 82 EGDPTDNAQDFYDWLQETDVD-------LSGVKFAVFGLGNKTYEH-FNAMGKYVDKRLE 133
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 134 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 162
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ++LV+ +++
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D L+ KFAVFG+G+K+YE FN + K + +++
Sbjct: 86 EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ++LV+ +++
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D L+ KFAVFG+G+K+YE FN + K + +++
Sbjct: 86 EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ++LV+ +++
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D L+ KFAVFG+G+K+YE FN + K + +++
Sbjct: 86 EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn-And Fad-Containing Enzymes
Length = 615
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ++LV+ +++
Sbjct: 19 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 78
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D L+ KFAVFG+G+K+YE FN + K + +++
Sbjct: 79 EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 130
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 131 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 159
>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|B Chain B, Nadph-Cytochrome P450 Reductase In An Open Conformation
pdb|3ES9|C Chain C, Nadph-Cytochrome P450 Reductase In An Open Conformation
Length = 618
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ++LV+ +++
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P + A+ F +W+ E+ D L+ KFAVFG+G+K+YE FN + K + +++
Sbjct: 86 EGDPTDNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166
>pdb|3OJW|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive
Length = 622
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 14/150 (9%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-----EALVLIVASSWE 126
+F+ SQTGT++ A RL + DP+ Y+ DLS ++LV+ +++
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFAMATYG 85
Query: 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
+G P A+ F +W+ E+ D L+ KFAVFG+G+K+YE FN + K + +++
Sbjct: 86 EGDPTCNAQDFYDWLQETDVD-------LTGVKFAVFGLGNKTYEH-FNAMGKYVDQRLE 137
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216
+LGA + + GD D G L+ F W ++
Sbjct: 138 QLGAQRIFELGLGD-DDGNLEEDFITWREQ 166
>pdb|1YKG|A Chain A, Solution Structure Of The Flavodoxin-Like Domain From The
Escherichia Coli Sulfite Reductase
Length = 167
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 10/148 (6%)
Query: 76 SQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAK 135
SQTG ++ +A+ L L + L LV+ Y+ + ++ E L+++V S+ +G+PPE A
Sbjct: 18 SQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAV 77
Query: 136 FFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP 195
++ F + L N FAVF +G SYE F KD K+ ELG +L
Sbjct: 78 ALHKFL------FSKKAPKLENTAFAVFSLGDTSYE-FFCQSGKDFDSKLAELGGERLLD 130
Query: 196 VVEGDVDGGELDVVFEDWSKRVVAILKS 223
V+ DV E +W RVV LKS
Sbjct: 131 RVDADV---EYQAAASEWRARVVDALKS 155
>pdb|3HR4|A Chain A, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|C Chain C, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|E Chain E, Human Inos Reductase And Calmodulin Complex
pdb|3HR4|G Chain G, Human Inos Reductase And Calmodulin Complex
Length = 219
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFD--LVDPQTYEPEDLSKEALVLIVASSWEDGK 129
+ F ++TG S+ LA L AL + F+ +V Y L +E L+L+V S++ +G
Sbjct: 45 ILFATETGKSEALAWDLGALFSCA---FNPKVVCMDKYRLSCLEEERLLLVVTSTFGNGD 101
Query: 130 PP---EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186
P E K + + E N FR +AVFG+GS Y + F A D+ +K+
Sbjct: 102 CPGNGEKLKKSLFMLKELNNKFR----------YAVFGLGSSMYPR-FCAFAHDIDQKLS 150
Query: 187 ELGAGEVLPVVEGDVDGGELDVVFEDWS 214
LGA ++ P+ EGD G+ D F W+
Sbjct: 151 HLGASQLTPMGEGDELSGQED-AFRSWA 177
>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr
Length = 637
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEPEDLSK-EALVLIVASSWEDGK 129
+ + SQTGT++ AK+ L + +L D + Y+ E L+ +V I S++ +G
Sbjct: 43 VLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD 102
Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
P+ A F ++I + G+L SN ++ +FG+G+ +YE FN AK K + G
Sbjct: 103 FPDGAVNFEDFICNA----EAGAL--SNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAG 155
Query: 190 AGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
A + + E D G D + W ++ +LK
Sbjct: 156 AIRLGKLGEADDGAGTTDEDYMAWKDSILEVLK 188
>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BF4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductases.
pdb|2BN4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
pdb|2BN4|B Chain B, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450
Reductase Suggests A Novel Mechanism Of Electron
Transfer By Diflavin Reductase
Length = 682
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEPEDLSK-EALVLIVASSWEDGK 129
+ + SQTGT++ AK+ L + +L D + Y+ E L+ +V I S++ +G
Sbjct: 54 VLYASQTGTAEDYAKKFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD 113
Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
P+ A F ++I + G+L SN ++ +FG+G+ +YE FN AK K + G
Sbjct: 114 FPDGAVNFEDFICNA----EAGAL--SNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAG 166
Query: 190 AGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
A + + E D G D + W ++ +LK
Sbjct: 167 AIRLGKLGEADDGAGTTDEDYMAWKDSILEVLK 199
>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution.
pdb|1TLL|B Chain B, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase
Reductase Module At 2.3 A Resolution
Length = 688
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 42/183 (22%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDL--VDPQTYEPEDLSKEALVLIVASSWEDGK 129
+ + ++TG S+ AK L + FD + + Y+ L EALVL+V S++ +G
Sbjct: 16 ILYATETGKSQAYAKTLCEIFKH---AFDAKAMSMEEYDIVHLEHEALVLVVTSTFGNGD 72
Query: 130 PPEAAKFF---------MNWIDESANDFRV-----------------GSLL--------- 154
PPE + F N + E ++V G L
Sbjct: 73 PPENGEKFGCALMEMRHPNSVQEERKSYKVRFNSVSSYSDSRKSSGDGPDLRDNFESTGP 132
Query: 155 LSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWS 214
L+N +F+VFG+GS++Y F + + ELG +L + EGD G+ + F W+
Sbjct: 133 LANVRFSVFGLGSRAYPH-FCAFGHAVDTLLEELGGERILKMREGDELCGQ-EEAFRTWA 190
Query: 215 KRV 217
K+V
Sbjct: 191 KKV 193
>pdb|1BVY|F Chain F, Complex Of The Heme And Fmn-Binding Domains Of The
Cytochrome P450(Bm-3)
Length = 191
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
+ + S GT++ A+ L + S + ++ +L +E VLIV +S+ +G PP
Sbjct: 26 VLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-AGNLPREGAVLIVTASY-NGHPP 83
Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAG 191
+ AK F++W+D+++ D G +++VFG G K++ T+ V + + + GA
Sbjct: 84 DNAKQFVDWLDQASADEVKG------VRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAE 137
Query: 192 EVLPVVEGDVDGGELDVVFEDWSKRV 217
+ E D + + +E+W + +
Sbjct: 138 NIADRGEADA-SDDFEGTYEEWREHM 162
>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a.
pdb|2BPO|B Chain B, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g,
Y75f, K78a
Length = 682
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEPEDLSK-EALVLIVASSWEDGK 129
+ + SQTGT++ AK L + +L D + Y+ E L+ +V I S++ +G
Sbjct: 54 VLYASQTGTAEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVPVIVSIFISTYGEGD 113
Query: 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG 189
P+ A F ++I + G+L SN ++ +FG+G+ +YE FN AK K + G
Sbjct: 114 FPDGAVNFEDFICNA----EAGAL--SNLRYNMFGLGNSTYE-FFNGAAKKAEKHLSAAG 166
Query: 190 AGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222
A + + E D G D + W ++ +LK
Sbjct: 167 AIRLGKLGEADDGAGTTDEDYMAWKDSILEVLK 199
>pdb|1CZK|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials
Length = 169
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
LF+ +QTG ++T+A+ + ++ DL D + DL+ ++I +W G+
Sbjct: 5 LFYGTQTGVTQTIAESIQQEFGGESIV-DLNDIANADASDLNAYDYLIIGCPTWNVGELQ 63
Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGA 190
+ + +D S+ K A FG G + Y F L +K+ LG+
Sbjct: 64 SDWEGIYDDLD---------SVNFQGKKVAYFGAGDQVGYSDNFQNAMGILEEKISSLGS 114
Query: 191 GEV 193
V
Sbjct: 115 QTV 117
>pdb|1CZR|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials
Length = 169
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
LF+ +QTG ++T+A+ + ++ DL D + DL+ ++I +W G+
Sbjct: 5 LFYGTQTGVTQTIAESIQQEFGGESIV-DLNDIANADASDLNAYDYLIIGCPTWNVGELQ 63
Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGA 190
+ + +D S+ K A FG G++ Y F L +K+ LG+
Sbjct: 64 SDWEGIYDDLD---------SVNFQGKKVAYFGAGNQVGYSDNFQDAMGILEEKISSLGS 114
Query: 191 GEV 193
V
Sbjct: 115 QTV 117
>pdb|1CZL|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1CZN|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
pdb|1CZU|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
pdb|1D04|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1OFV|A Chain A, Flavodoxin From Anacystis Nidulans: Refinement Of Two
Forms Of The Oxidized Protein
Length = 169
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
LF+ +QTG ++T+A+ + ++ DL D + DL+ ++I +W G+
Sbjct: 5 LFYGTQTGVTQTIAESIQQEFGGESIV-DLNDIANADASDLNAYDYLIIGCPTWNVGELQ 63
Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGA 190
+ + +D S+ K A FG G + Y F L +K+ LG+
Sbjct: 64 SDWEGIYDDLD---------SVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGS 114
Query: 191 GEV 193
V
Sbjct: 115 QTV 117
>pdb|1CZH|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1CZO|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1D03|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
Length = 169
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP 131
LF+ +QTG ++T+A+ + ++ DL D + DL+ ++I +W G+
Sbjct: 5 LFYGTQTGVTQTIAESIQQEFGGESIV-DLNDIANADASDLNAYDYLIIGCPTWGVGELQ 63
Query: 132 EAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGA 190
+ + +D S+ K A FG G + Y F L +K+ LG+
Sbjct: 64 SDWEGIYDDLD---------SVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGS 114
Query: 191 GEV 193
V
Sbjct: 115 QTV 117
>pdb|1KDH|A Chain A, Binary Complex Of Murine Terminal Deoxynucleotidyl
Transferase With A Primer Single Stranded Dna
pdb|1KEJ|A Chain A, Crystal Structure Of Murine Terminal Deoxynucleotidyl
Transferase Complexed With Ddatp
Length = 363
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAK 179
I+ EDG+ EA K +N DE F++ + +VFGVG K+ EK F M +
Sbjct: 77 IIEGIIEDGESSEA-KAVLN--DERYKSFKLFT--------SVFGVGLKTAEKWFRMGFR 125
Query: 180 DLSK 183
LSK
Sbjct: 126 TLSK 129
>pdb|1JMS|A Chain A, Crystal Structure Of The Catalytic Core Of Murine Terminal
Deoxynucleotidyl Transferase
Length = 381
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAK 179
I+ EDG+ EA K +N DE F++ + +VFGVG K+ EK F M +
Sbjct: 95 IIEGIIEDGESSEA-KAVLN--DERYKSFKLFT--------SVFGVGLKTAEKWFRMGFR 143
Query: 180 DLSK 183
LSK
Sbjct: 144 TLSK 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,755,320
Number of Sequences: 62578
Number of extensions: 648529
Number of successful extensions: 1559
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 29
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)