Query 038595
Match_columns 534
No_of_seqs 449 out of 1941
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 12:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1160 Fe-S oxidoreductase [E 100.0 4E-116 1E-120 909.4 25.5 427 27-534 8-434 (601)
2 PRK13762 tRNA-modifying enzyme 100.0 7.7E-68 1.7E-72 544.4 18.2 206 294-534 3-211 (322)
3 COG0731 Fe-S oxidoreductases [ 100.0 5.2E-44 1.1E-48 362.7 12.4 159 324-534 1-161 (296)
4 PRK09004 FMN-binding protein M 100.0 3.6E-32 7.9E-37 251.0 17.8 143 69-221 3-146 (146)
5 PRK05723 flavodoxin; Provision 100.0 3.7E-32 7.9E-37 252.9 17.6 146 69-222 2-150 (151)
6 PRK08105 flavodoxin; Provision 100.0 1E-31 2.2E-36 248.8 18.4 145 69-221 3-148 (149)
7 PRK10953 cysJ sulfite reductas 100.0 1.3E-28 2.8E-33 272.2 20.0 196 20-225 11-209 (600)
8 TIGR01931 cysJ sulfite reducta 100.0 3.3E-28 7.1E-33 268.8 19.3 148 68-225 59-206 (597)
9 KOG1159 NADP-dependent flavopr 100.0 1.4E-28 3E-33 260.4 13.4 153 69-226 2-155 (574)
10 PF00258 Flavodoxin_1: Flavodo 99.9 6.8E-28 1.5E-32 217.3 9.9 139 72-213 1-143 (143)
11 PRK07308 flavodoxin; Validated 99.9 3.9E-25 8.4E-30 202.1 17.0 141 69-219 3-144 (146)
12 PRK06703 flavodoxin; Provision 99.9 2.3E-23 4.9E-28 191.2 17.1 145 69-223 3-149 (151)
13 PRK09271 flavodoxin; Provision 99.9 2.6E-21 5.7E-26 180.4 16.9 140 69-222 2-148 (160)
14 PRK12359 flavodoxin FldB; Prov 99.9 5.2E-21 1.1E-25 182.0 17.9 143 69-222 2-169 (172)
15 TIGR01753 flav_short flavodoxi 99.9 3.4E-21 7.4E-26 171.9 14.5 137 70-217 1-139 (140)
16 PRK06756 flavodoxin; Provision 99.9 1E-20 2.2E-25 173.0 16.4 143 69-221 3-147 (148)
17 TIGR01752 flav_long flavodoxin 99.8 2.3E-20 5E-25 175.1 16.2 117 69-196 1-118 (167)
18 TIGR01754 flav_RNR ribonucleot 99.8 3.7E-20 8.1E-25 168.5 14.6 132 69-217 2-139 (140)
19 COG0369 CysJ Sulfite reductase 99.8 8.4E-20 1.8E-24 201.4 12.2 151 67-226 47-197 (587)
20 COG0716 FldA Flavodoxins [Ener 99.8 1.8E-18 3.8E-23 159.8 15.5 143 69-220 3-150 (151)
21 PRK09267 flavodoxin FldA; Vali 99.8 2.1E-18 4.5E-23 161.1 15.9 142 69-221 3-167 (169)
22 KOG1158 NADP/FAD dependent oxi 99.7 5.5E-18 1.2E-22 187.8 8.7 148 68-225 47-195 (645)
23 PRK02551 flavoprotein NrdI; Pr 99.7 1.8E-17 3.8E-22 155.5 9.9 121 69-195 3-129 (154)
24 PRK11921 metallo-beta-lactamas 99.7 7.9E-16 1.7E-20 162.4 13.4 140 67-221 247-393 (394)
25 TIGR00333 nrdI ribonucleoside- 99.6 6.1E-15 1.3E-19 134.2 13.9 93 72-187 1-93 (125)
26 PRK05569 flavodoxin; Provision 99.6 1.1E-14 2.4E-19 131.7 14.5 135 69-217 3-139 (141)
27 PRK05568 flavodoxin; Provision 99.6 2.4E-14 5.2E-19 129.5 14.7 136 69-218 3-140 (142)
28 PRK05452 anaerobic nitric oxid 99.6 1.8E-14 4E-19 156.3 14.2 140 67-222 251-397 (479)
29 COG2100 Predicted Fe-S oxidore 99.5 3E-14 6.6E-19 146.2 10.6 132 339-523 96-235 (414)
30 PRK03600 nrdI ribonucleotide r 99.5 8.8E-14 1.9E-18 127.8 12.4 124 69-219 2-130 (134)
31 TIGR02109 PQQ_syn_pqqE coenzym 99.5 2.6E-13 5.6E-18 140.7 10.9 76 455-533 55-134 (358)
32 PRK05301 pyrroloquinoline quin 99.4 6.4E-13 1.4E-17 139.1 11.9 76 455-533 64-143 (378)
33 PRK13361 molybdenum cofactor b 99.4 4.5E-13 9.8E-18 138.4 9.8 76 454-533 62-142 (329)
34 TIGR02668 moaA_archaeal probab 99.4 7.5E-13 1.6E-17 134.3 10.9 76 454-533 57-136 (302)
35 PLN02951 Molybderin biosynthes 99.4 1.3E-12 2.8E-17 137.8 12.1 121 346-524 56-181 (373)
36 TIGR02495 NrdG2 anaerobic ribo 99.4 2.5E-12 5.3E-17 121.8 11.4 67 455-523 64-133 (191)
37 TIGR03470 HpnH hopanoid biosyn 99.4 2E-12 4.3E-17 133.5 10.4 74 456-533 75-151 (318)
38 PRK06242 flavodoxin; Provision 99.4 3.8E-12 8.2E-17 116.0 10.9 106 69-195 2-108 (150)
39 TIGR02493 PFLA pyruvate format 99.4 3.1E-12 6.8E-17 124.8 10.4 69 455-524 67-140 (235)
40 PRK00164 moaA molybdenum cofac 99.4 3.3E-12 7.2E-17 131.3 11.1 119 348-524 17-140 (331)
41 TIGR01290 nifB nitrogenase cof 99.3 9.9E-12 2.1E-16 134.0 12.0 119 349-522 25-153 (442)
42 PRK11145 pflA pyruvate formate 99.3 5.8E-12 1.2E-16 124.3 8.3 68 456-524 73-145 (246)
43 TIGR02666 moaA molybdenum cofa 99.3 1.6E-11 3.4E-16 126.6 11.5 70 454-524 60-134 (334)
44 TIGR03365 Bsubt_queE 7-cyano-7 99.2 2.5E-11 5.4E-16 120.7 9.9 59 454-515 73-131 (238)
45 PF04055 Radical_SAM: Radical 99.2 2.4E-11 5.2E-16 108.1 8.1 120 353-533 2-129 (166)
46 TIGR01755 flav_wrbA NAD(P)H:qu 99.2 1.1E-10 2.4E-15 112.8 12.6 119 69-194 2-141 (197)
47 PRK14470 ribosomal RNA large s 99.2 1.2E-10 2.6E-15 121.8 12.4 119 349-525 98-225 (336)
48 PRK11104 hemG protoporphyrinog 99.2 6.9E-11 1.5E-15 112.7 9.6 86 69-166 2-87 (177)
49 PF07972 Flavodoxin_NdrI: NrdI 99.2 1.1E-10 2.3E-15 106.2 8.9 102 72-194 1-106 (122)
50 PRK03767 NAD(P)H:quinone oxido 99.1 3.8E-10 8.3E-15 108.9 12.1 119 69-194 3-142 (200)
51 PRK13758 anaerobic sulfatase-m 99.1 2E-10 4.3E-15 119.7 10.2 76 456-533 60-146 (370)
52 PF13353 Fer4_12: 4Fe-4S singl 99.1 5E-11 1.1E-15 106.7 4.1 80 454-534 53-139 (139)
53 COG2896 MoaA Molybdenum cofact 99.1 2E-10 4.3E-15 119.3 8.0 68 463-533 68-139 (322)
54 PF13394 Fer4_14: 4Fe-4S singl 99.1 9E-11 2E-15 103.0 3.8 39 455-494 49-92 (119)
55 COG1780 NrdI Protein involved 99.1 1.3E-09 2.8E-14 100.4 11.2 129 69-222 2-134 (141)
56 PRK14469 ribosomal RNA large s 99.0 7.7E-10 1.7E-14 115.6 10.6 68 454-522 149-226 (343)
57 COG0426 FpaA Uncharacterized f 99.0 1.7E-09 3.8E-14 114.6 12.6 119 69-202 248-370 (388)
58 cd01335 Radical_SAM Radical SA 99.0 2.2E-09 4.7E-14 97.7 10.5 62 461-522 51-118 (204)
59 TIGR03278 methan_mark_10 putat 99.0 1.5E-09 3.3E-14 116.1 10.5 69 455-523 75-149 (404)
60 PRK14456 ribosomal RNA large s 99.0 2.9E-09 6.3E-14 112.7 12.5 71 453-524 173-254 (368)
61 PRK14460 ribosomal RNA large s 99.0 5.5E-09 1.2E-13 110.0 13.5 70 454-524 156-234 (354)
62 PRK14468 ribosomal RNA large s 99.0 2.4E-09 5.1E-14 112.3 10.7 72 453-525 143-224 (343)
63 PRK13745 anaerobic sulfatase-m 99.0 2.2E-09 4.8E-14 114.4 10.2 77 456-533 68-155 (412)
64 PRK07116 flavodoxin; Provision 99.0 5.2E-09 1.1E-13 97.7 11.4 125 69-217 4-158 (160)
65 PF12641 Flavodoxin_3: Flavodo 98.9 8.7E-09 1.9E-13 97.5 10.7 97 71-187 1-98 (160)
66 PRK14463 ribosomal RNA large s 98.9 9.2E-09 2E-13 108.2 11.2 70 454-524 149-227 (349)
67 PRK14455 ribosomal RNA large s 98.9 8.4E-09 1.8E-13 108.7 10.8 113 355-522 116-237 (356)
68 TIGR02494 PFLE_PFLC glycyl-rad 98.9 5.1E-09 1.1E-13 106.0 8.3 69 455-524 127-198 (295)
69 PRK14457 ribosomal RNA large s 98.9 1.3E-08 2.9E-13 106.9 11.6 70 454-524 149-232 (345)
70 TIGR00048 radical SAM enzyme, 98.9 1.4E-08 3E-13 107.0 11.5 118 350-523 107-234 (355)
71 COG0535 Predicted Fe-S oxidore 98.9 9.4E-09 2E-13 104.1 9.7 70 462-533 73-147 (347)
72 PF12724 Flavodoxin_5: Flavodo 98.8 3E-08 6.5E-13 90.9 11.9 86 71-168 1-86 (143)
73 smart00729 Elp3 Elongator prot 98.8 1E-08 2.2E-13 94.8 8.7 118 352-525 5-133 (216)
74 PRK14467 ribosomal RNA large s 98.8 1.5E-08 3.2E-13 106.7 10.9 71 454-524 148-229 (348)
75 COG1180 PflA Pyruvate-formate 98.8 1.1E-08 2.3E-13 103.6 9.0 70 463-532 92-164 (260)
76 PRK14466 ribosomal RNA large s 98.7 4.5E-08 9.7E-13 102.9 10.8 71 454-524 149-227 (345)
77 COG5014 Predicted Fe-S oxidore 98.7 2.9E-08 6.4E-13 95.2 7.2 117 355-531 48-172 (228)
78 PRK14459 ribosomal RNA large s 98.7 1E-07 2.2E-12 101.2 11.1 69 454-523 177-257 (373)
79 PRK14453 chloramphenicol/florf 98.6 2.5E-07 5.4E-12 97.4 12.3 70 454-523 147-224 (347)
80 PRK15108 biotin synthase; Prov 98.6 1.4E-07 3E-12 99.0 9.9 120 354-533 49-174 (345)
81 COG0641 AslB Arylsulfatase reg 98.6 1.5E-07 3.4E-12 100.0 9.5 123 350-533 9-144 (378)
82 PRK14465 ribosomal RNA large s 98.6 1.5E-07 3.3E-12 98.9 9.2 109 356-522 113-230 (342)
83 PRK14454 ribosomal RNA large s 98.6 2.2E-07 4.8E-12 97.6 10.2 66 457-523 152-227 (342)
84 PRK14462 ribosomal RNA large s 98.6 2.6E-07 5.5E-12 97.7 10.1 69 454-523 161-239 (356)
85 PF03358 FMN_red: NADPH-depend 98.5 4.5E-07 9.7E-12 82.7 9.7 118 69-195 2-142 (152)
86 TIGR02491 NrdG anaerobic ribon 98.5 3.2E-07 6.9E-12 85.7 7.1 57 456-516 66-133 (154)
87 PRK10076 pyruvate formate lyas 98.5 3.7E-07 8E-12 90.1 7.6 61 463-523 47-110 (213)
88 COG4635 HemG Flavodoxin [Energ 98.4 5.6E-07 1.2E-11 85.4 7.0 110 69-191 2-114 (175)
89 PRK11194 ribosomal RNA large s 98.4 1.9E-06 4.2E-11 91.6 11.1 69 454-523 158-235 (372)
90 PRK14464 ribosomal RNA large s 98.3 7.6E-07 1.7E-11 93.7 6.4 109 356-525 104-220 (344)
91 PF12682 Flavodoxin_4: Flavodo 98.3 2.6E-06 5.6E-11 80.2 9.0 126 69-217 1-156 (156)
92 COG0602 NrdG Organic radical a 98.3 1.2E-06 2.7E-11 86.3 7.0 39 458-496 74-113 (212)
93 TIGR00433 bioB biotin syntheta 98.3 2.2E-06 4.7E-11 86.7 8.8 117 349-524 31-154 (296)
94 TIGR03567 FMN_reduc_SsuE FMN r 98.2 3E-05 6.6E-10 73.3 14.8 116 69-196 1-135 (171)
95 PLN02389 biotin synthase 98.2 3.6E-06 7.7E-11 89.8 7.3 123 348-525 84-210 (379)
96 TIGR02826 RNR_activ_nrdG3 anae 98.2 2.8E-06 6.2E-11 79.4 5.8 52 460-514 66-118 (147)
97 PRK10569 NAD(P)H-dependent FMN 98.1 7.7E-05 1.7E-09 72.4 15.3 114 69-194 2-134 (191)
98 PRK07094 biotin synthase; Prov 98.1 1.3E-05 2.9E-10 82.4 10.1 119 347-525 38-162 (323)
99 TIGR03566 FMN_reduc_MsuE FMN r 98.0 8.3E-05 1.8E-09 70.3 13.1 114 69-194 1-136 (174)
100 PRK06934 flavodoxin; Provision 98.0 3.4E-05 7.4E-10 76.9 10.3 121 78-217 70-217 (221)
101 TIGR00238 KamA family protein. 98.0 1E-05 2.3E-10 84.6 6.8 65 454-519 160-237 (331)
102 PRK09240 thiH thiamine biosynt 97.9 4.9E-05 1.1E-09 80.7 10.7 111 352-522 78-193 (371)
103 TIGR02351 thiH thiazole biosyn 97.9 4.8E-05 1E-09 80.5 10.0 110 353-522 78-192 (366)
104 PRK06256 biotin synthase; Vali 97.9 3.3E-05 7.3E-10 80.0 8.6 113 355-525 65-184 (336)
105 TIGR03822 AblA_like_2 lysine-2 97.9 5.5E-05 1.2E-09 78.8 9.5 61 455-516 138-210 (321)
106 PRK05660 HemN family oxidoredu 97.9 9.8E-05 2.1E-09 78.4 11.2 68 458-525 61-140 (378)
107 PRK00170 azoreductase; Reviewe 97.8 0.00036 7.7E-09 66.7 13.9 128 69-197 3-173 (201)
108 PRK01355 azoreductase; Reviewe 97.8 0.00066 1.4E-08 65.8 14.6 154 69-223 3-194 (199)
109 PRK09739 hypothetical protein; 97.7 0.00092 2E-08 64.5 14.9 151 69-223 5-196 (199)
110 TIGR03821 AblA_like_1 lysine-2 97.7 2.6E-05 5.7E-10 81.3 4.1 65 454-520 143-221 (321)
111 PRK09249 coproporphyrinogen II 97.7 0.00021 4.6E-09 77.5 10.3 68 458-525 105-184 (453)
112 TIGR00539 hemN_rel putative ox 97.6 0.00036 7.8E-09 73.4 11.3 67 459-525 55-133 (360)
113 TIGR03820 lys_2_3_AblA lysine- 97.6 0.00029 6.4E-09 76.2 10.1 60 456-517 158-230 (417)
114 TIGR00538 hemN oxygen-independ 97.6 0.00034 7.3E-09 75.9 10.7 64 462-525 110-184 (455)
115 PF02525 Flavodoxin_2: Flavodo 97.6 0.0014 3E-08 62.9 13.7 152 69-221 2-199 (199)
116 PRK14461 ribosomal RNA large s 97.5 0.00057 1.2E-08 73.0 11.2 72 453-526 168-249 (371)
117 PRK11121 nrdG anaerobic ribonu 97.5 8.5E-05 1.8E-09 69.7 4.3 68 457-528 69-145 (154)
118 COG1964 Predicted Fe-S oxidore 97.5 0.00012 2.7E-09 79.0 6.0 82 443-524 91-187 (475)
119 PRK13347 coproporphyrinogen II 97.5 0.00065 1.4E-08 73.9 11.4 70 457-526 105-186 (453)
120 PRK08446 coproporphyrinogen II 97.4 0.0011 2.5E-08 69.6 10.7 69 458-526 54-132 (350)
121 PRK08508 biotin synthase; Prov 97.4 0.00076 1.6E-08 68.9 8.9 60 469-532 75-138 (279)
122 TIGR03471 HpnJ hopanoid biosyn 97.3 0.0017 3.6E-08 70.7 11.4 115 355-526 203-321 (472)
123 PRK08208 coproporphyrinogen II 97.3 0.0016 3.4E-08 70.4 10.8 66 461-526 98-175 (430)
124 TIGR02690 resist_ArsH arsenica 97.3 0.0055 1.2E-07 61.2 13.7 118 68-193 27-161 (219)
125 PRK05628 coproporphyrinogen II 97.2 0.0023 4.9E-08 67.7 11.1 65 462-526 67-142 (375)
126 PRK14862 rimO ribosomal protei 97.2 0.00086 1.9E-08 72.8 8.1 125 355-525 146-278 (440)
127 PRK13556 azoreductase; Provisi 97.1 0.015 3.4E-07 56.5 15.2 129 69-200 3-181 (208)
128 TIGR03551 F420_cofH 7,8-dideme 97.1 0.0013 2.9E-08 68.9 8.0 115 351-523 42-173 (343)
129 PRK08599 coproporphyrinogen II 97.1 0.0021 4.6E-08 67.9 9.4 65 462-526 59-134 (377)
130 COG1313 PflX Uncharacterized F 97.1 0.002 4.4E-08 66.7 8.8 68 462-532 173-243 (335)
131 PRK05799 coproporphyrinogen II 97.1 0.0036 7.9E-08 66.0 11.0 65 462-526 59-133 (374)
132 TIGR03699 mena_SCO4550 menaqui 97.1 0.0017 3.6E-08 67.8 8.2 114 352-523 45-175 (340)
133 PRK14338 (dimethylallyl)adenos 97.1 0.0023 4.9E-08 69.9 9.6 116 356-526 163-288 (459)
134 COG0655 WrbA Multimeric flavod 97.1 0.0028 6.1E-08 61.7 9.3 116 70-193 6-148 (207)
135 PRK06267 hypothetical protein; 96.9 0.0038 8.2E-08 65.9 9.5 125 343-525 22-150 (350)
136 PRK08207 coproporphyrinogen II 96.9 0.0058 1.2E-07 67.5 11.1 69 458-526 221-303 (488)
137 COG0820 Predicted Fe-S-cluster 96.9 0.0043 9.3E-08 65.8 9.5 114 355-522 108-230 (349)
138 PRK14334 (dimethylallyl)adenos 96.9 0.0038 8.2E-08 67.7 9.3 118 356-527 146-271 (440)
139 PRK06294 coproporphyrinogen II 96.9 0.007 1.5E-07 64.3 10.9 65 462-526 66-137 (370)
140 TIGR03700 mena_SCO4494 putativ 96.8 0.0051 1.1E-07 64.8 9.2 117 349-524 49-183 (351)
141 TIGR02026 BchE magnesium-proto 96.7 0.0089 1.9E-07 65.8 10.8 112 354-525 199-320 (497)
142 TIGR01125 MiaB-like tRNA modif 96.6 0.0085 1.8E-07 64.6 9.4 115 355-526 142-268 (430)
143 KOG2876 Molybdenum cofactor bi 96.5 0.0016 3.4E-08 66.8 2.8 68 463-533 68-140 (323)
144 TIGR00089 RNA modification enz 96.5 0.0092 2E-07 64.3 8.7 115 356-527 147-273 (429)
145 TIGR00423 radical SAM domain p 96.5 0.012 2.7E-07 60.7 9.0 114 351-523 8-139 (309)
146 PRK05904 coproporphyrinogen II 96.4 0.022 4.8E-07 60.3 11.0 65 462-526 64-137 (353)
147 PRK06582 coproporphyrinogen II 96.3 0.029 6.3E-07 60.2 11.4 69 458-526 65-145 (390)
148 PRK09613 thiH thiamine biosynt 96.3 0.017 3.8E-07 63.6 9.5 113 351-522 87-210 (469)
149 PRK08898 coproporphyrinogen II 96.2 0.043 9.2E-07 58.8 11.9 69 458-526 76-156 (394)
150 PRK13555 azoreductase; Provisi 96.1 0.068 1.5E-06 52.8 11.7 124 69-193 3-175 (208)
151 PRK09057 coproporphyrinogen II 96.1 0.05 1.1E-06 58.0 11.3 69 458-526 58-138 (380)
152 PRK06245 cofG FO synthase subu 96.0 0.012 2.5E-07 61.4 6.1 38 352-394 16-53 (336)
153 PRK14327 (dimethylallyl)adenos 96.0 0.03 6.4E-07 62.4 9.5 118 356-528 220-347 (509)
154 PRK08444 hypothetical protein; 96.0 0.013 2.8E-07 62.2 6.4 128 348-533 49-194 (353)
155 PRK14331 (dimethylallyl)adenos 95.8 0.043 9.3E-07 59.5 9.8 114 356-526 154-278 (437)
156 PRK07379 coproporphyrinogen II 95.7 0.09 1.9E-06 56.5 11.3 69 458-526 69-149 (400)
157 PRK04930 glutathione-regulated 95.6 0.83 1.8E-05 44.6 16.7 152 68-224 6-178 (184)
158 PRK08445 hypothetical protein; 95.6 0.047 1E-06 57.9 8.6 116 349-523 43-176 (348)
159 PRK14340 (dimethylallyl)adenos 95.6 0.056 1.2E-06 59.0 9.4 114 356-526 157-281 (445)
160 PRK14337 (dimethylallyl)adenos 95.4 0.065 1.4E-06 58.4 9.3 120 356-530 156-286 (446)
161 KOG1160 Fe-S oxidoreductase [E 95.4 0.022 4.8E-07 62.1 5.3 187 30-222 317-516 (601)
162 PRK09058 coproporphyrinogen II 95.2 0.1 2.2E-06 57.1 10.0 70 458-527 117-198 (449)
163 PRK14328 (dimethylallyl)adenos 95.2 0.099 2.1E-06 56.8 9.9 117 356-528 155-282 (439)
164 COG1060 ThiH Thiamine biosynth 95.2 0.041 8.9E-07 59.0 6.7 42 350-394 61-102 (370)
165 TIGR01574 miaB-methiolase tRNA 95.2 0.083 1.8E-06 57.4 9.1 121 356-531 153-285 (438)
166 PRK08629 coproporphyrinogen II 95.1 0.12 2.5E-06 56.4 10.1 65 462-526 109-179 (433)
167 PRK14325 (dimethylallyl)adenos 95.1 0.084 1.8E-06 57.3 8.9 117 356-527 155-283 (444)
168 COG0502 BioB Biotin synthase a 95.0 0.055 1.2E-06 57.4 7.0 108 357-523 60-174 (335)
169 PRK14336 (dimethylallyl)adenos 95.0 0.089 1.9E-06 56.9 8.8 118 356-530 132-261 (418)
170 PRK14326 (dimethylallyl)adenos 95.0 0.12 2.6E-06 57.4 9.8 116 355-526 164-290 (502)
171 PRK14329 (dimethylallyl)adenos 95.0 0.098 2.1E-06 57.4 9.0 120 355-527 175-307 (467)
172 TIGR03550 F420_cofG 7,8-dideme 94.8 0.081 1.7E-06 55.2 7.6 127 352-525 8-142 (322)
173 COG2108 Uncharacterized conser 94.8 0.072 1.6E-06 56.3 7.0 52 460-511 83-143 (353)
174 TIGR01579 MiaB-like-C MiaB-lik 94.6 0.21 4.6E-06 53.6 10.2 115 355-526 145-271 (414)
175 COG0621 MiaB 2-methylthioadeni 94.6 0.14 3E-06 56.3 8.7 117 357-528 153-280 (437)
176 PRK00871 glutathione-regulated 94.4 1.7 3.6E-05 42.2 15.0 150 70-222 2-168 (176)
177 PRK14332 (dimethylallyl)adenos 94.4 0.19 4.2E-06 55.0 9.4 117 355-530 161-288 (449)
178 TIGR00510 lipA lipoate synthas 94.4 0.18 3.9E-06 52.7 8.8 55 469-524 127-187 (302)
179 PLN02428 lipoic acid synthase 94.4 0.22 4.8E-06 53.2 9.6 151 301-524 67-226 (349)
180 PRK14339 (dimethylallyl)adenos 94.3 0.2 4.3E-06 54.3 9.2 118 355-526 134-263 (420)
181 TIGR01578 MiaB-like-B MiaB-lik 94.1 0.18 3.8E-06 54.6 8.3 115 355-527 140-267 (420)
182 PRK14330 (dimethylallyl)adenos 94.1 0.3 6.6E-06 52.9 10.1 116 356-527 148-274 (434)
183 COG0431 Predicted flavoprotein 94.0 0.56 1.2E-05 45.2 10.9 114 69-194 2-135 (184)
184 PRK05481 lipoyl synthase; Prov 93.9 0.46 1E-05 49.2 10.6 122 349-532 54-184 (289)
185 TIGR01212 radical SAM protein, 93.8 0.35 7.6E-06 50.2 9.6 65 462-526 85-161 (302)
186 PRK07360 FO synthase subunit 2 93.0 0.43 9.3E-06 50.9 9.0 112 352-522 64-194 (371)
187 PRK12928 lipoyl synthase; Prov 93.0 0.37 8E-06 50.0 8.1 62 469-531 123-191 (290)
188 COG1032 Fe-S oxidoreductase [E 92.9 0.34 7.3E-06 51.5 8.0 118 355-527 205-335 (490)
189 PRK05926 hypothetical protein; 92.6 0.21 4.5E-06 53.6 6.0 112 351-522 71-200 (370)
190 PRK14333 (dimethylallyl)adenos 92.5 0.36 7.7E-06 52.7 7.7 123 357-530 157-292 (448)
191 PRK00955 hypothetical protein; 92.5 0.41 8.9E-06 54.7 8.3 57 469-526 387-457 (620)
192 KOG3135 1,4-benzoquinone reduc 92.3 0.93 2E-05 44.2 9.1 124 69-200 3-147 (203)
193 TIGR01211 ELP3 histone acetylt 92.2 0.67 1.4E-05 52.1 9.5 43 484-526 194-240 (522)
194 TIGR01210 conserved hypothetic 91.6 2.5 5.5E-05 44.2 12.4 63 464-526 81-153 (313)
195 COG1625 Fe-S oxidoreductase, r 91.2 0.63 1.4E-05 50.7 7.6 68 456-523 81-156 (414)
196 PRK14335 (dimethylallyl)adenos 91.0 1.3 2.8E-05 48.7 9.9 25 503-527 268-292 (455)
197 COG1533 SplB DNA repair photol 90.1 2.3 4.9E-05 44.6 10.3 68 454-521 83-161 (297)
198 COG2516 Biotin synthase-relate 90.0 0.32 7E-06 51.4 4.0 78 455-532 88-172 (339)
199 COG0635 HemN Coproporphyrinoge 90.0 2.7 5.9E-05 45.9 11.2 65 462-526 95-171 (416)
200 COG2249 MdaB Putative NADPH-qu 89.0 8.3 0.00018 37.9 12.7 152 69-224 2-187 (189)
201 TIGR02253 CTE7 HAD superfamily 87.3 1 2.2E-05 43.1 5.3 60 465-524 93-162 (221)
202 PRK05927 hypothetical protein; 86.1 1.3 2.8E-05 47.2 5.7 38 353-393 50-87 (350)
203 PRK06769 hypothetical protein; 85.8 1.4 3.1E-05 41.7 5.2 61 463-523 25-104 (173)
204 TIGR02247 HAD-1A3-hyp Epoxide 85.7 1.5 3.3E-05 41.9 5.4 60 464-523 92-163 (211)
205 PRK09234 fbiC FO synthase; Rev 85.3 1.1 2.5E-05 52.9 5.2 126 351-520 74-204 (843)
206 cd07371 2A5CPDO_AB The alpha a 84.8 6 0.00013 40.5 9.6 99 81-188 86-205 (268)
207 TIGR01664 DNA-3'-Pase DNA 3'-p 83.8 1.8 4E-05 41.0 5.0 42 452-493 11-69 (166)
208 TIGR01662 HAD-SF-IIIA HAD-supe 83.8 1.8 3.9E-05 38.4 4.7 30 463-492 22-51 (132)
209 TIGR02252 DREG-2 REG-2-like, H 82.3 3.1 6.7E-05 39.4 6.0 58 466-523 105-171 (203)
210 TIGR01668 YqeG_hyp_ppase HAD s 82.3 4 8.6E-05 38.6 6.6 80 443-523 15-102 (170)
211 PRK14988 GMP/IMP nucleotidase; 82.1 2.5 5.4E-05 41.6 5.4 61 463-523 90-160 (224)
212 TIGR01990 bPGM beta-phosphoglu 81.6 3.4 7.4E-05 38.2 5.9 59 465-523 86-152 (185)
213 PTZ00413 lipoate synthase; Pro 81.0 8.8 0.00019 41.9 9.4 150 300-524 112-273 (398)
214 TIGR01428 HAD_type_II 2-haloal 80.9 2.3 4.9E-05 40.3 4.5 59 465-523 91-159 (198)
215 KOG0560 Sulfite reductase (fer 80.8 0.64 1.4E-05 51.6 0.8 64 162-225 1-70 (638)
216 COG1243 ELP3 Histone acetyltra 79.7 3.3 7.1E-05 46.0 5.7 33 494-526 198-232 (515)
217 KOG4549 Magnesium-dependent ph 79.5 1.7 3.7E-05 40.7 2.9 39 463-501 41-79 (144)
218 PRK09456 ?-D-glucose-1-phospha 78.8 4.2 9.1E-05 38.8 5.6 57 467-523 85-152 (199)
219 TIGR01509 HAD-SF-IA-v3 haloaci 78.1 6.1 0.00013 36.2 6.3 59 465-523 84-151 (183)
220 TIGR01681 HAD-SF-IIIC HAD-supe 78.1 1.8 4E-05 39.0 2.8 33 466-498 29-61 (128)
221 PRK10826 2-deoxyglucose-6-phos 77.9 4.1 8.9E-05 39.4 5.3 59 465-523 91-159 (222)
222 PRK09234 fbiC FO synthase; Rev 77.7 3.6 7.7E-05 48.9 5.6 41 352-395 530-570 (843)
223 TIGR01449 PGP_bact 2-phosphogl 76.9 4.9 0.00011 38.1 5.4 61 463-523 82-152 (213)
224 PLN02770 haloacid dehalogenase 76.9 4.3 9.4E-05 40.4 5.3 59 465-523 107-175 (248)
225 PRK11587 putative phosphatase; 76.4 3.4 7.3E-05 40.0 4.2 33 463-495 80-112 (218)
226 PRK09449 dUMP phosphatase; Pro 75.8 6 0.00013 38.1 5.8 58 465-523 94-161 (224)
227 PRK01254 hypothetical protein; 74.8 12 0.00026 43.6 8.6 57 469-525 468-535 (707)
228 TIGR03351 PhnX-like phosphonat 74.3 3.9 8.5E-05 39.2 4.1 59 463-521 84-154 (220)
229 cd07373 2A5CPDO_A The alpha su 73.5 17 0.00037 37.2 8.7 80 81-170 89-179 (271)
230 COG1509 KamA Lysine 2,3-aminom 73.3 3.3 7.1E-05 44.6 3.5 42 453-494 186-231 (369)
231 cd05566 PTS_IIB_galactitol PTS 71.4 13 0.00027 31.2 6.0 51 69-120 2-54 (89)
232 TIGR01656 Histidinol-ppas hist 71.4 3.9 8.4E-05 37.5 3.1 26 467-492 28-53 (147)
233 PRK08942 D,D-heptose 1,7-bisph 71.4 8.8 0.00019 36.2 5.6 26 467-492 30-55 (181)
234 TIGR00213 GmhB_yaeD D,D-heptos 70.7 4 8.7E-05 38.4 3.2 29 464-492 24-52 (176)
235 COG1011 Predicted hydrolase (H 70.4 7.2 0.00016 37.3 4.9 59 464-523 97-165 (229)
236 PF06283 ThuA: Trehalose utili 70.3 20 0.00044 34.9 8.0 73 69-142 1-79 (217)
237 PF13419 HAD_2: Haloacid dehal 70.1 3.3 7.2E-05 36.9 2.3 61 462-522 73-143 (176)
238 TIGR02009 PGMB-YQAB-SF beta-ph 69.6 12 0.00026 34.5 6.1 29 463-491 85-113 (185)
239 cd07372 2A5CPDO_B The beta sub 68.6 31 0.00068 36.1 9.4 101 80-188 96-226 (294)
240 TIGR01549 HAD-SF-IA-v1 haloaci 68.0 6.1 0.00013 35.6 3.6 61 463-523 61-129 (154)
241 TIGR01454 AHBA_synth_RP 3-amin 67.1 6.7 0.00014 37.4 3.9 34 463-496 72-105 (205)
242 cd01427 HAD_like Haloacid deha 67.0 7.3 0.00016 32.8 3.7 32 463-494 21-52 (139)
243 cd07363 45_DOPA_Dioxygenase Th 66.6 23 0.0005 35.9 7.8 95 81-187 79-189 (253)
244 PLN02954 phosphoserine phospha 66.3 7.6 0.00017 37.3 4.1 31 464-494 82-112 (224)
245 PF09314 DUF1972: Domain of un 66.2 1.1E+02 0.0024 30.1 12.1 55 75-129 13-68 (185)
246 PLN02811 hydrolase 65.9 8.1 0.00018 37.5 4.3 31 464-494 76-106 (220)
247 TIGR01691 enolase-ppase 2,3-di 65.4 6.3 0.00014 39.3 3.4 29 466-494 95-123 (220)
248 PF15243 ANAPC15: Anaphase-pro 65.1 9.5 0.00021 33.7 4.1 21 206-226 33-53 (92)
249 TIGR01685 MDP-1 magnesium-depe 65.1 14 0.0003 35.8 5.6 30 462-491 41-70 (174)
250 KOG4530 Predicted flavoprotein 63.1 25 0.00054 34.4 6.8 104 70-187 13-147 (199)
251 TIGR01491 HAD-SF-IB-PSPlk HAD- 62.6 7.8 0.00017 36.2 3.4 28 466-493 80-107 (201)
252 TIGR01261 hisB_Nterm histidino 61.6 7.3 0.00016 36.8 3.0 27 466-492 29-55 (161)
253 PRK09552 mtnX 2-hydroxy-3-keto 61.3 9.5 0.00021 37.1 3.8 30 465-494 73-102 (219)
254 TIGR02254 YjjG/YfnB HAD superf 61.0 16 0.00034 34.8 5.2 58 465-523 96-163 (224)
255 PRK13288 pyrophosphatase PpaX; 60.8 10 0.00022 36.4 3.9 30 466-495 82-111 (214)
256 PF13344 Hydrolase_6: Haloacid 60.6 12 0.00025 32.7 3.9 26 468-493 16-41 (101)
257 KOG1615 Phosphoserine phosphat 60.4 9.3 0.0002 38.4 3.5 31 464-494 86-116 (227)
258 COG1242 Predicted Fe-S oxidore 60.3 33 0.00071 36.3 7.6 63 443-525 101-165 (312)
259 COG4359 Uncharacterized conser 60.3 12 0.00025 37.5 4.1 58 467-525 74-134 (220)
260 PLN02779 haloacid dehalogenase 60.0 9 0.00019 39.3 3.5 30 465-494 143-172 (286)
261 PLN03243 haloacid dehalogenase 60.0 9.8 0.00021 38.7 3.8 58 465-522 108-175 (260)
262 PHA02530 pseT polynucleotide k 59.9 23 0.0005 35.8 6.4 33 462-494 183-215 (300)
263 TIGR00338 serB phosphoserine p 59.7 10 0.00022 36.3 3.7 28 466-493 85-112 (219)
264 TIGR02298 HpaD_Fe 3,4-dihydrox 59.6 46 0.00099 34.5 8.6 82 81-170 95-185 (282)
265 PRK06698 bifunctional 5'-methy 58.4 12 0.00026 40.9 4.3 34 463-496 327-360 (459)
266 PRK13478 phosphonoacetaldehyde 57.5 11 0.00025 37.7 3.7 60 463-522 98-168 (267)
267 PRK10310 PTS system galactitol 57.5 16 0.00035 31.6 4.2 36 69-104 4-39 (94)
268 PRK13226 phosphoglycolate phos 57.4 12 0.00026 36.6 3.8 31 464-494 93-123 (229)
269 PRK10748 flavin mononucleotide 57.2 20 0.00043 35.5 5.3 57 465-522 112-173 (238)
270 TIGR01422 phosphonatase phosph 56.5 12 0.00026 37.0 3.6 60 464-523 97-167 (253)
271 cd07362 HPCD_like Class III ex 55.9 75 0.0016 32.7 9.4 82 81-170 91-181 (272)
272 TIGR01501 MthylAspMutase methy 55.5 98 0.0021 29.0 9.2 122 71-216 3-130 (134)
273 cd07367 CarBb CarBb is the B s 55.4 62 0.0013 33.2 8.7 85 81-170 89-183 (268)
274 PLN02575 haloacid dehalogenase 55.4 21 0.00046 38.8 5.6 61 463-523 213-283 (381)
275 TIGR03279 cyano_FeS_chp putati 55.2 7.1 0.00015 43.1 1.9 17 356-372 82-98 (433)
276 cd03142 GATase1_ThuA Type 1 gl 54.7 46 0.001 33.4 7.4 70 84-167 24-98 (215)
277 PF02302 PTS_IIB: PTS system, 54.5 14 0.00031 30.6 3.3 57 69-126 1-58 (90)
278 PRK13222 phosphoglycolate phos 54.4 17 0.00037 34.7 4.2 32 463-494 90-121 (226)
279 TIGR01459 HAD-SF-IIA-hyp4 HAD- 54.0 15 0.00033 36.3 3.9 30 465-494 23-52 (242)
280 PF08357 SEFIR: SEFIR domain; 52.9 92 0.002 28.3 8.6 32 69-100 2-34 (150)
281 PRK13223 phosphoglycolate phos 52.4 18 0.00038 36.8 4.2 32 463-494 98-129 (272)
282 PRK13225 phosphoglycolate phos 51.7 18 0.0004 37.0 4.2 32 464-495 140-171 (273)
283 COG0429 Predicted hydrolase of 51.3 1.4E+02 0.0031 32.3 10.7 97 69-192 77-173 (345)
284 TIGR01488 HAD-SF-IB Haloacid D 51.3 18 0.00038 33.2 3.6 30 465-494 72-101 (177)
285 PF09651 Cas_APE2256: CRISPR-a 51.0 19 0.0004 33.4 3.7 37 70-106 24-60 (136)
286 cd00578 L-fuc_L-ara-isomerases 51.0 2.2E+02 0.0047 31.2 12.5 126 70-217 3-152 (452)
287 TIGR01548 HAD-SF-IA-hyp1 haloa 50.9 18 0.00039 34.3 3.8 30 463-494 105-134 (197)
288 COG0320 LipA Lipoate synthase 50.9 60 0.0013 34.3 7.6 71 301-392 40-110 (306)
289 cd03030 GRX_SH3BGR Glutaredoxi 50.9 35 0.00075 29.7 5.2 37 70-106 2-40 (92)
290 cd05013 SIS_RpiR RpiR-like pro 50.4 22 0.00048 30.8 4.0 34 457-493 65-98 (139)
291 cd02072 Glm_B12_BD B12 binding 49.9 1.2E+02 0.0026 28.2 8.8 110 72-198 2-117 (128)
292 TIGR01489 DKMTPPase-SF 2,3-dik 49.9 20 0.00044 33.0 3.8 29 466-494 72-100 (188)
293 cd00133 PTS_IIB PTS_IIB: subun 49.7 35 0.00077 26.9 4.8 29 70-98 2-30 (84)
294 cd05563 PTS_IIB_ascorbate PTS_ 49.7 39 0.00084 28.0 5.2 39 69-107 1-41 (86)
295 COG1867 TRM1 N2,N2-dimethylgua 48.7 39 0.00085 36.8 6.2 36 463-500 330-373 (380)
296 cd05564 PTS_IIB_chitobiose_lic 48.5 23 0.0005 30.7 3.7 36 69-105 1-36 (96)
297 PF00702 Hydrolase: haloacid d 47.3 18 0.00038 33.9 3.0 60 463-522 124-188 (215)
298 PF04908 SH3BGR: SH3-binding, 47.3 37 0.00079 30.3 4.8 37 70-106 3-41 (99)
299 TIGR03333 salvage_mtnX 2-hydro 47.2 20 0.00044 34.7 3.5 30 464-493 68-97 (214)
300 cd07368 PhnC_Bs_like PhnC is a 46.9 94 0.002 32.1 8.5 84 81-170 94-192 (277)
301 PF02900 LigB: Catalytic LigB 46.8 1E+02 0.0022 31.1 8.6 101 80-188 94-211 (272)
302 TIGR02244 HAD-IG-Ncltidse HAD 46.7 20 0.00043 38.5 3.6 33 468-500 186-221 (343)
303 cd07370 HPCD The Class III ext 46.7 1.5E+02 0.0033 30.4 10.0 81 81-170 93-182 (280)
304 TIGR01490 HAD-SF-IB-hyp1 HAD-s 45.5 18 0.00039 34.1 2.8 31 464-494 85-115 (202)
305 cd07364 PCA_45_Dioxygenase_B S 45.3 1.2E+02 0.0025 31.6 8.9 84 81-170 97-193 (277)
306 PRK11009 aphA acid phosphatase 44.3 21 0.00044 36.3 3.1 28 464-491 112-139 (237)
307 cd05567 PTS_IIB_mannitol PTS_I 44.2 55 0.0012 27.5 5.3 39 69-107 2-42 (87)
308 PF04295 GD_AH_C: D-galactarat 44.1 4.4E+02 0.0096 29.1 13.3 129 66-224 16-147 (396)
309 PLN02940 riboflavin kinase 43.7 28 0.00061 37.4 4.2 59 465-523 92-161 (382)
310 cd07952 ED_3B_like Uncharacter 41.8 1.4E+02 0.0031 30.2 8.8 98 80-187 78-195 (256)
311 TIGR01533 lipo_e_P4 5'-nucleot 41.7 77 0.0017 32.8 6.9 42 443-492 103-144 (266)
312 COG2179 Predicted hydrolase of 41.7 38 0.00082 33.3 4.3 47 463-509 43-89 (175)
313 smart00577 CPDc catalytic doma 41.2 26 0.00057 32.2 3.1 27 467-494 46-72 (148)
314 PF08645 PNK3P: Polynucleotide 41.2 19 0.0004 34.1 2.2 25 466-490 29-53 (159)
315 PRK14192 bifunctional 5,10-met 40.7 4.5E+02 0.0097 27.5 12.5 107 69-190 35-184 (283)
316 PRK06702 O-acetylhomoserine am 40.2 61 0.0013 35.7 6.2 47 443-489 135-184 (432)
317 cd05568 PTS_IIB_bgl_like PTS_I 40.2 32 0.0007 28.0 3.2 50 69-119 2-51 (85)
318 cd05006 SIS_GmhA Phosphoheptos 40.1 98 0.0021 29.1 6.9 54 457-517 106-159 (177)
319 PF09153 DUF1938: Domain of un 39.8 9.8 0.00021 33.1 0.1 44 453-496 23-67 (86)
320 PRK13363 protocatechuate 4,5-d 39.7 2.1E+02 0.0046 30.7 10.0 97 81-187 154-265 (335)
321 TIGR01672 AphA HAD superfamily 39.0 28 0.00061 35.3 3.2 30 463-492 111-140 (237)
322 cd05008 SIS_GlmS_GlmD_1 SIS (S 38.3 45 0.00097 29.1 4.0 35 456-493 50-84 (126)
323 cd04795 SIS SIS domain. SIS (S 37.9 50 0.0011 26.6 4.0 31 456-489 51-81 (87)
324 TIGR03127 RuMP_HxlB 6-phospho 37.9 43 0.00092 31.5 4.1 35 456-493 76-110 (179)
325 cd05005 SIS_PHI Hexulose-6-pho 37.5 42 0.0009 31.7 3.9 35 456-493 79-113 (179)
326 cd05565 PTS_IIB_lactose PTS_II 37.3 44 0.00096 29.6 3.8 76 70-164 3-79 (99)
327 TIGR00853 pts-lac PTS system, 37.1 39 0.00085 29.4 3.4 36 69-105 5-40 (95)
328 COG0546 Gph Predicted phosphat 37.0 43 0.00092 32.7 4.0 31 464-494 87-117 (220)
329 cd05710 SIS_1 A subgroup of th 36.2 51 0.0011 29.2 4.1 35 456-493 51-85 (120)
330 PRK08883 ribulose-phosphate 3- 36.0 1E+02 0.0023 30.8 6.6 67 444-514 69-141 (220)
331 PF12689 Acid_PPase: Acid Phos 35.7 30 0.00065 33.5 2.7 41 462-502 40-81 (169)
332 PF13439 Glyco_transf_4: Glyco 35.7 1.3E+02 0.0028 26.4 6.6 38 70-107 3-40 (177)
333 PLN02645 phosphoglycolate phos 35.7 43 0.00094 34.7 4.0 27 467-493 45-71 (311)
334 COG1856 Uncharacterized homolo 35.3 57 0.0012 33.7 4.6 52 472-523 77-130 (275)
335 cd03174 DRE_TIM_metallolyase D 35.1 54 0.0012 32.4 4.5 47 467-515 49-100 (265)
336 PRK10444 UMP phosphatase; Prov 34.9 78 0.0017 32.0 5.6 28 466-493 17-44 (248)
337 cd07366 3MGA_Dioxygenase Subun 34.7 3E+02 0.0065 29.5 10.2 97 81-187 150-261 (328)
338 TIGR01675 plant-AP plant acid 34.6 1.5E+02 0.0033 30.2 7.6 59 426-492 83-146 (229)
339 TIGR02137 HSK-PSP phosphoserin 34.3 41 0.00089 33.0 3.4 42 442-494 54-95 (203)
340 PRK05446 imidazole glycerol-ph 34.2 32 0.0007 37.0 2.8 29 463-491 27-55 (354)
341 TIGR01686 FkbH FkbH-like domai 34.1 56 0.0012 34.0 4.6 28 467-494 32-59 (320)
342 PRK09622 porA pyruvate flavodo 33.7 2.3E+02 0.0049 31.0 9.3 102 69-183 270-382 (407)
343 PRK13582 thrH phosphoserine ph 33.6 44 0.00095 31.6 3.4 28 466-494 68-95 (205)
344 cd04915 ACT_AK-Ectoine_2 ACT d 33.6 89 0.0019 25.0 4.7 36 457-492 3-39 (66)
345 COG0560 SerB Phosphoserine pho 33.3 44 0.00096 33.1 3.5 38 465-502 76-115 (212)
346 PRK11557 putative DNA-binding 33.2 51 0.0011 33.2 4.0 35 456-493 179-213 (278)
347 PF01380 SIS: SIS domain SIS d 33.2 78 0.0017 27.4 4.7 39 453-494 52-92 (131)
348 cd07359 PCA_45_Doxase_B_like S 32.9 2.3E+02 0.005 28.8 8.6 83 82-170 94-186 (271)
349 PHA03398 viral phosphatase sup 32.6 46 0.001 35.3 3.6 30 468-497 150-179 (303)
350 TIGR00441 gmhA phosphoheptose 32.5 57 0.0012 30.4 3.9 33 457-492 84-116 (154)
351 PF01976 DUF116: Protein of un 32.4 40 0.00087 32.3 2.9 33 470-502 74-107 (158)
352 KOG4044 Mitochondrial associat 32.3 26 0.00057 34.5 1.6 35 296-354 87-121 (201)
353 PRK13358 protocatechuate 4,5-d 32.2 3E+02 0.0065 28.0 9.4 85 81-170 89-183 (269)
354 TIGR01663 PNK-3'Pase polynucle 32.2 38 0.00083 38.4 3.2 26 467-492 198-223 (526)
355 PRK11133 serB phosphoserine ph 32.2 70 0.0015 33.8 4.9 39 467-505 182-222 (322)
356 COG1798 DPH5 Diphthamide biosy 31.4 77 0.0017 33.0 4.9 84 411-496 27-117 (260)
357 PRK02261 methylaspartate mutas 31.3 4.3E+02 0.0093 24.5 9.9 122 70-218 4-134 (137)
358 TIGR02667 moaB_proteo molybden 31.2 62 0.0013 30.8 4.0 39 155-194 2-40 (163)
359 COG0036 Rpe Pentose-5-phosphat 30.9 1.4E+02 0.003 30.4 6.5 75 444-522 72-158 (220)
360 TIGR01544 HAD-SF-IE haloacid d 30.4 58 0.0013 34.0 3.9 43 443-493 106-148 (277)
361 cd05014 SIS_Kpsf KpsF-like pro 30.4 72 0.0016 27.9 4.0 31 457-490 52-82 (128)
362 TIGR01670 YrbI-phosphatas 3-de 30.3 81 0.0018 29.2 4.5 48 474-522 36-85 (154)
363 cd07949 PCA_45_Doxase_B_like_1 30.2 2.8E+02 0.0061 28.8 8.9 83 81-170 97-192 (276)
364 PF05761 5_nucleotid: 5' nucle 30.1 37 0.00081 37.7 2.6 52 468-519 185-249 (448)
365 PRK11302 DNA-binding transcrip 29.9 64 0.0014 32.4 4.1 32 456-490 179-210 (284)
366 TIGR02250 FCP1_euk FCP1-like p 29.8 56 0.0012 30.9 3.4 36 466-502 58-96 (156)
367 PRK08745 ribulose-phosphate 3- 29.4 1.4E+02 0.0031 30.0 6.4 66 444-513 73-144 (223)
368 PRK09590 celB cellobiose phosp 29.1 66 0.0014 28.7 3.5 78 69-165 3-83 (104)
369 PRK15452 putative protease; Pr 28.9 92 0.002 34.6 5.3 50 444-493 12-70 (443)
370 PRK15438 erythronate-4-phospha 28.8 1.1E+02 0.0025 33.2 5.9 73 107-194 72-144 (378)
371 cd02071 MM_CoA_mut_B12_BD meth 28.8 92 0.002 27.8 4.5 58 443-501 37-99 (122)
372 PRK02261 methylaspartate mutas 28.4 1.1E+02 0.0024 28.3 5.1 64 443-508 41-118 (137)
373 PRK05752 uroporphyrinogen-III 28.3 1.8E+02 0.0039 29.1 6.9 67 83-164 13-90 (255)
374 cd04951 GT1_WbdM_like This fam 28.2 1.8E+02 0.0039 28.9 6.9 37 70-106 2-39 (360)
375 PRK09548 PTS system ascorbate- 27.9 1.6E+02 0.0035 34.2 7.1 39 69-107 508-548 (602)
376 cd07320 Extradiol_Dioxygenase_ 27.9 3.8E+02 0.0082 26.7 9.1 79 81-170 82-171 (260)
377 PF06399 GFRP: GTP cyclohydrol 27.7 39 0.00085 29.4 1.7 26 301-326 54-79 (83)
378 PF00834 Ribul_P_3_epim: Ribul 27.7 1.4E+02 0.0031 29.5 5.9 74 445-522 69-154 (201)
379 PF14258 DUF4350: Domain of un 27.6 2E+02 0.0044 22.9 5.9 54 86-143 8-62 (70)
380 PRK07269 cystathionine gamma-s 27.6 89 0.0019 33.3 4.8 80 406-489 91-173 (364)
381 PRK13937 phosphoheptose isomer 27.5 78 0.0017 30.5 4.0 33 457-492 111-143 (188)
382 COG1004 Ugd Predicted UDP-gluc 27.5 1.2E+02 0.0027 33.5 5.9 73 121-193 254-347 (414)
383 PF01866 Diphthamide_syn: Puta 27.3 91 0.002 32.6 4.7 53 69-121 211-267 (307)
384 TIGR01684 viral_ppase viral ph 27.3 62 0.0013 34.4 3.5 33 468-500 148-180 (301)
385 cd01450 vWFA_subfamily_ECM Von 27.2 1.7E+02 0.0037 25.7 5.9 48 455-502 104-153 (161)
386 cd03808 GT1_cap1E_like This fa 27.1 3.9E+02 0.0084 25.7 8.8 56 70-126 2-57 (359)
387 cd02067 B12-binding B12 bindin 27.0 1.3E+02 0.0029 26.3 5.1 49 443-493 37-90 (119)
388 PLN02928 oxidoreductase family 26.7 1.8E+02 0.0039 31.0 6.9 32 153-193 155-186 (347)
389 PRK13366 protocatechuate 4,5-d 26.7 3.4E+02 0.0073 28.4 8.7 83 82-170 98-193 (284)
390 PF00762 Ferrochelatase: Ferro 26.6 1E+02 0.0023 32.5 5.1 60 443-502 211-275 (316)
391 COG1104 NifS Cysteine sulfinat 26.5 1E+02 0.0022 33.8 5.1 51 440-492 126-179 (386)
392 PRK00414 gmhA phosphoheptose i 26.2 86 0.0019 30.5 4.1 33 457-492 116-148 (192)
393 PRK09722 allulose-6-phosphate 26.2 1.7E+02 0.0037 29.8 6.3 77 444-523 70-158 (229)
394 PF00590 TP_methylase: Tetrapy 25.9 1.3E+02 0.0029 28.5 5.3 48 449-496 71-120 (210)
395 TIGR00640 acid_CoA_mut_C methy 25.9 3.1E+02 0.0067 25.3 7.5 105 69-197 2-113 (132)
396 PF13433 Peripla_BP_5: Peripla 25.8 1.5E+02 0.0032 32.3 6.1 54 128-196 115-169 (363)
397 cd03820 GT1_amsD_like This fam 25.8 2.8E+02 0.006 26.6 7.5 39 70-108 2-42 (348)
398 PRK10886 DnaA initiator-associ 25.6 2.1E+02 0.0045 28.2 6.6 54 457-514 114-167 (196)
399 PRK13936 phosphoheptose isomer 25.1 91 0.002 30.4 4.0 33 457-492 116-148 (197)
400 PRK10628 LigB family dioxygena 25.0 4.8E+02 0.01 26.9 9.3 75 81-170 69-152 (246)
401 PRK09212 pyruvate dehydrogenas 24.9 1.4E+02 0.003 31.6 5.7 68 70-144 205-279 (327)
402 COG4277 Predicted DNA-binding 24.7 2.3E+02 0.005 30.6 7.0 52 347-402 50-105 (404)
403 PLN02919 haloacid dehalogenase 24.7 77 0.0017 38.9 4.1 59 465-523 160-229 (1057)
404 COG0826 Collagenase and relate 24.6 93 0.002 33.5 4.3 27 467-493 47-73 (347)
405 PF02780 Transketolase_C: Tran 24.5 37 0.0008 30.2 1.1 37 70-110 13-49 (124)
406 COG0111 SerA Phosphoglycerate 24.5 1.4E+02 0.003 31.7 5.5 34 152-194 137-170 (324)
407 PRK00257 erythronate-4-phospha 24.4 1.2E+02 0.0027 32.9 5.2 72 107-193 72-143 (381)
408 TIGR01545 YfhB_g-proteo haloac 24.3 75 0.0016 31.2 3.3 28 466-493 94-122 (210)
409 TIGR01752 flav_long flavodoxin 24.2 2.8E+02 0.0061 26.0 7.1 97 117-223 2-109 (167)
410 PRK11590 hypothetical protein; 24.1 80 0.0017 30.6 3.4 28 467-494 96-124 (211)
411 COG3414 SgaB Phosphotransferas 23.9 2E+02 0.0043 25.3 5.5 39 69-107 3-43 (93)
412 cd04918 ACT_AK1-AT_2 ACT domai 23.7 1.3E+02 0.0028 23.8 4.0 34 458-492 3-38 (65)
413 TIGR01993 Pyr-5-nucltdase pyri 23.5 1.1E+02 0.0024 28.5 4.1 54 466-522 84-151 (184)
414 PRK13609 diacylglycerol glucos 23.3 1.3E+02 0.0028 31.3 5.0 37 69-105 6-43 (380)
415 PF01297 TroA: Periplasmic sol 23.3 4.4E+02 0.0096 26.1 8.7 55 447-501 162-218 (256)
416 COG0647 NagD Predicted sugar p 23.0 1E+02 0.0022 32.1 4.1 26 468-493 26-51 (269)
417 PF09861 DUF2088: Domain of un 22.7 2.1E+02 0.0046 28.5 6.1 73 446-518 45-133 (204)
418 PTZ00445 p36-lilke protein; Pr 22.6 88 0.0019 31.8 3.4 26 467-492 76-101 (219)
419 PRK08091 ribulose-phosphate 3- 22.6 2.2E+02 0.0047 29.0 6.3 75 444-522 79-167 (228)
420 TIGR00109 hemH ferrochelatase. 22.5 1.1E+02 0.0024 32.2 4.3 80 417-500 193-278 (322)
421 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.3 2.6E+02 0.0057 24.2 6.1 65 72-142 3-70 (126)
422 PF02826 2-Hacid_dh_C: D-isome 22.1 1.2E+02 0.0026 28.8 4.1 36 150-194 29-64 (178)
423 PF06524 NOA36: NOA36 protein; 22.1 70 0.0015 33.5 2.6 24 70-93 81-104 (314)
424 cd05569 PTS_IIB_fructose PTS_I 22.1 1.7E+02 0.0037 25.4 4.7 51 73-123 6-62 (96)
425 cd04955 GT1_like_6 This family 21.9 3.8E+02 0.0082 26.7 7.9 34 75-108 11-44 (363)
426 PRK13125 trpA tryptophan synth 21.8 1.6E+02 0.0035 29.6 5.2 46 469-514 116-164 (244)
427 TIGR03849 arch_ComA phosphosul 21.8 65 0.0014 33.1 2.4 24 470-493 72-95 (237)
428 PRK13364 protocatechuate 4,5-d 21.7 5.6E+02 0.012 26.7 9.2 84 81-170 97-192 (278)
429 PF06888 Put_Phosphatase: Puta 21.6 88 0.0019 31.8 3.3 41 443-493 58-100 (234)
430 PF14871 GHL6: Hypothetical gl 21.2 1.2E+02 0.0026 28.1 3.8 43 470-513 45-87 (132)
431 KOG1832 HIV-1 Vpr-binding prot 21.1 45 0.00096 40.3 1.1 13 69-81 1206-1218(1516)
432 smart00775 LNS2 LNS2 domain. T 21.0 1E+02 0.0022 29.0 3.4 34 460-493 21-54 (157)
433 PRK03881 hypothetical protein; 21.0 4.2E+02 0.0091 29.5 8.6 96 81-187 90-209 (467)
434 PF12076 Wax2_C: WAX2 C-termin 21.0 42 0.0009 32.7 0.7 32 77-108 3-34 (164)
435 PRK14194 bifunctional 5,10-met 20.9 8.2E+02 0.018 26.0 10.3 109 69-192 35-186 (301)
436 PF03767 Acid_phosphat_B: HAD 20.8 67 0.0015 32.2 2.2 51 463-513 112-170 (229)
437 cd03811 GT1_WabH_like This fam 20.7 4.1E+02 0.009 25.4 7.6 39 70-108 2-41 (353)
438 cd05005 SIS_PHI Hexulose-6-pho 20.5 3.6E+02 0.0078 25.3 7.0 48 71-122 36-83 (179)
439 COG0561 Cof Predicted hydrolas 20.5 2.2E+02 0.0047 28.2 5.8 49 464-512 18-68 (264)
440 cd07950 Gallate_Doxase_N The N 20.4 6.5E+02 0.014 26.1 9.4 84 81-170 97-193 (277)
441 TIGR00522 dph5 diphthine synth 20.2 1.6E+02 0.0035 29.9 4.9 40 455-494 76-115 (257)
442 PRK02947 hypothetical protein; 20.1 1.3E+02 0.0027 30.5 4.0 34 456-492 110-143 (246)
443 PRK07452 DNA polymerase III su 20.1 9.5E+02 0.021 24.6 12.4 131 70-222 3-147 (326)
No 1
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.5e-116 Score=909.39 Aligned_cols=427 Identities=52% Similarity=0.844 Sum_probs=389.9
Q ss_pred cchhhhhhhhhhHHHHHhhchhhhhhcCCCCCCCCCCCCCCCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC
Q 038595 27 ESRNCSRLQEATTFYFAYKSRRLNKFLRHSDYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT 106 (534)
Q Consensus 27 ~~~~~~~~l~a~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d 106 (534)
+-++.+..+++++.+++.|..+.+-.++.+-.+.+....++. .|||+|+||||+++|+.+++.|.+....++++|++
T Consensus 8 ~v~i~f~~~s~s~~~~~~k~~~~r~~k~~s~~k~~~~~~~~~--~vfy~s~~GtA~~~A~~~~e~~~sld~~~~llnl~- 84 (601)
T KOG1160|consen 8 PVTIDFTKLSSSTPKCFSKNSSSRVLKKLSVSKIGPDGLIKS--KVFYSSLTGTAKKAAKSVHEKLKSLDELPKLLNLD- 84 (601)
T ss_pred eEEEEeeecccCCcceeehhhhhhhhhhcccCccCcccCccc--eEEEEeccchHHHHHHHHHHHHHhcccchhhcCCC-
Confidence 445556788999999999999988888777766666666664 99999999999999999999999988889999999
Q ss_pred CCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHH
Q 038595 107 YEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186 (534)
Q Consensus 107 ~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~ 186 (534)
+++.|++ +++++|++.|+.+|.|| +++|++||+++++|||+++.+|+|++|||||+||++|.++||++|+++|+|+.
T Consensus 85 y~~~d~p-en~~~~lv~~~~~~~~~--~d~~~~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~ 161 (601)
T KOG1160|consen 85 YSDFDVP-ENALYFLVLPSYDIDPP--LDYFLQWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWIS 161 (601)
T ss_pred CCccCCC-cceEEEEEecccCCCCc--HHHHHHHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHH
Confidence 8888888 66666666666668888 78999999999999999999999999999999999988899999999999999
Q ss_pred HcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCCCccccccCCCcccCCCCCCCCCCCCCCccccccccccccc
Q 038595 187 ELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGDRLENGIVNGEASIVGVESDPVYHEYDDDEEEEDVVESEMV 266 (534)
Q Consensus 187 kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (534)
+|||+|++|+|++|.+++. +++|+..++..|+...+.+.+ .. ++.+++++
T Consensus 162 ~LG~~r~~p~G~~~~~~~~----id~W~~~~~~~Lk~g~~~~~~-----------------~~---------ds~~~~i~ 211 (601)
T KOG1160|consen 162 RLGGRRIFPLGEVDMDSAK----IDEWTSLVAETLKDGEPIKYE-----------------NA---------DSGSDEIV 211 (601)
T ss_pred hhcCceeeecCcccccccc----HHHHHHHHHHHHcCCCeeeec-----------------cc---------ccccccee
Confidence 9999999999999998644 559999999999887764421 00 11456899
Q ss_pred ccccccCCCCCCCccccccccccccccccccccHHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccC
Q 038595 267 DLEDIAGKGPSRRSVNVAETNGKVKDSKRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIES 346 (534)
Q Consensus 267 d~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s 346 (534)
||||||+++...+ ...+.|+||||++|++|+||||++|||||||||||||||+|||||+||||+||||.|
T Consensus 212 DvEDig~~~~~~k----------~~~~~keMvt~~~~~aLTKQGYkviGSHSGVKiCRWTKs~lRGrG~CYK~sfygi~s 281 (601)
T KOG1160|consen 212 DVEDIGGKGGNGK----------GADEDKEMVTPDSYKALTKQGYKVIGSHSGVKICRWTKSELRGRGGCYKHSFYGICS 281 (601)
T ss_pred eHHHhcccccccc----------ccchhhhhcCHHHHHHHHhccceEeeccCCeeeeeechHHhccCCceeeeeecceeh
Confidence 9999998655433 234459999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccc
Q 038595 347 HRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSA 426 (534)
Q Consensus 347 ~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~ 426 (534)
||||++||+++|+|||+|||||+||||++.|+|+||.|+.|+.+++++|++||+||+|+||
T Consensus 282 ~rcmeltPslacanKcvfcWrh~tnpv~~~wrwk~d~pevil~gal~lhy~mikqmkgvpg------------------- 342 (601)
T KOG1160|consen 282 HRCMELTPSLACANKCVFCWRHDTNPVGEIWRWKMDAPEVILKGALYLHYNMIKQMKGVPG------------------- 342 (601)
T ss_pred hccCCCCCCcccCCCCceeeeccCCcccceEEEecCCchhhhHHHHHHHHHHHHHhhcCCC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceE
Q 038595 427 IDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQL 506 (534)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~ql 506 (534)
|.+||++||++++|||+|++|||++||+|+++++.||.+.|+.||+||+++|+.+..+.+|+|+
T Consensus 343 ----------------vk~Er~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issflvtnaq~pe~~rnvk~vtql 406 (601)
T KOG1160|consen 343 ----------------VKAERFEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFLVTNAQFPEDIRNVKPVTQL 406 (601)
T ss_pred ----------------cCHHHHHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHhcccccChHHHhchhhhhee
Confidence 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCHHHHHhhcCCCCCchhhhcC
Q 038595 507 YVSVDAATKDSLKAIDRPLFGDFWERFL 534 (534)
Q Consensus 507 yvSlDA~~~e~y~~I~rP~~~~~w~~~~ 534 (534)
|+|+||+++.+.++|+||+++||||||+
T Consensus 407 yvsvda~Tktslk~idrPlfkdFwEr~~ 434 (601)
T KOG1160|consen 407 YVSVDASTKTSLKKIDRPLFKDFWERFL 434 (601)
T ss_pred EEEEeecchhhhcCCCCchHHHHHHHHH
Confidence 9999999999999999999999999984
No 2
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=100.00 E-value=7.7e-68 Score=544.44 Aligned_cols=206 Identities=47% Similarity=0.882 Sum_probs=199.1
Q ss_pred ccccccHHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeeccccc-ccccccccccCCCCC
Q 038595 294 KRDMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLA-CANKCVFCWRHHTNP 372 (534)
Q Consensus 294 ~~~~~~~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~~-C~~~C~~C~r~~~~~ 372 (534)
.++|+++.+++.|+||||+|||+|||||+|||||++|||+|+||||+||||+|||||||||+++ ||++|+||||+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~y~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~q~~P~~~~C~~rC~fC~r~~~~~ 82 (322)
T PRK13762 3 LRIMIPSEIAKILRKQGYHIVGRHSAVKLCHWTKKALKGGRSCYKSKFYGIESHRCVQMTPVVAWCNQRCLFCWRPLEED 82 (322)
T ss_pred cccccCHHHHHHHHhCCCEEeccccceeechhhHHHhcCCCcccccccccccchheeccCchhHHHhccCceeeccCCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCC-cccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhc
Q 038595 373 VGK-SWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEG 451 (534)
Q Consensus 373 ~~~-~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea 451 (534)
++. .|.|.+++|++|++++++.|+++|++|+|+|+ |++|||+||
T Consensus 83 ~~~~~~~~~~~~peeiv~~~~~~~~~~i~g~~g~~~-----------------------------------v~~~~~~ea 127 (322)
T PRK13762 83 VGLELKEPEWDDPEEIVEESIKEQRKLLSGYKGNPK-----------------------------------VDREKFEEA 127 (322)
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHHHhhccCCCCC-----------------------------------CCHHHhhhc
Confidence 887 69999999999999999999999999999999 999999999
Q ss_pred cCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595 452 LTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLFGDFW 530 (534)
Q Consensus 452 ~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~~~~w 530 (534)
++|+|++||++|||||||+|.++++++|++|++++|+|||++|+.+++|.. +++++||||++++++|++|+||+.++.|
T Consensus 128 ~~~~~v~iSl~GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~ 207 (322)
T PRK13762 128 MEPKHVAISLSGEPTLYPYLPELIEEFHKRGFTTFLVTNGTRPDVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPDAW 207 (322)
T ss_pred cCCCEEEEeCCccccchhhHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHhcCCEEEEEccCCCHHHHHHHhCCCCCCcH
Confidence 999999999999999999999999999999999999999999999999954 7999999999999999999999878899
Q ss_pred hhcC
Q 038595 531 ERFL 534 (534)
Q Consensus 531 ~~~~ 534 (534)
++++
T Consensus 208 ~~vl 211 (322)
T PRK13762 208 ERIL 211 (322)
T ss_pred HHHH
Confidence 9874
No 3
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=100.00 E-value=5.2e-44 Score=362.73 Aligned_cols=159 Identities=40% Similarity=0.686 Sum_probs=147.0
Q ss_pred hhhhhhhcCCCccccceeeeccCCeeeeecccc-cccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcc
Q 038595 324 RWTKSQLRGRGGCYKHSFYGIESHRCMEATPSL-ACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQM 402 (534)
Q Consensus 324 ~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~-~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~ 402 (534)
+|||+++++.++|||++||||.+| +|+||++ .|+++||||||+. .+....| +|+.|+.+.|..|.+++.++
T Consensus 1 ~w~~~~~~~~~gp~ksrryG~slg--i~~tP~~~~Cs~~CvyC~~G~-~~~~~~~-----~~efi~~~~I~~~~~~~~~~ 72 (296)
T COG0731 1 HWTKKALPIVFGPVKSRRYGISLG--IQMTPSKKWCSYNCVYCWRGR-TKKGTPE-----RPEFIVEESILEELKLLLGY 72 (296)
T ss_pred CcchhhccCCCCCccccccccccC--CccccchhhhcCCCeEEeccc-CCCCCCC-----CCceecHHHHHHHHHHHhcc
Confidence 699999999999999999999999 9999999 7999999999943 3333332 89999999999999999988
Q ss_pred cCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcC
Q 038595 403 KGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRR 482 (534)
Q Consensus 403 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~g 482 (534)
+| + ||+.|||+|||++|||||||+|+|+|+.+|++|
T Consensus 73 ~g--~------------------------------------------ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~g 108 (296)
T COG0731 73 KG--D------------------------------------------EATEPDHVTISLSGEPTLYPNLGELIEEIKKRG 108 (296)
T ss_pred cc--c------------------------------------------ccCCCCEEEEeCCCCcccccCHHHHHHHHHhcC
Confidence 75 1 688999999999999999999999999999999
Q ss_pred -CcEEEEcCCCCHHHHhhcCCCceEEEEeeCCCHHHHHhhcCCCCCchhhhcC
Q 038595 483 -ISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFL 534 (534)
Q Consensus 483 -i~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~~ 534 (534)
++|||||||++|+++++|..+||||+||||+|+++|++|+||+.+++||+++
T Consensus 109 ~~~tflvTNgslpdv~~~L~~~dql~~sLdA~~~~~~~~InRP~~~~~~e~il 161 (296)
T COG0731 109 KKTTFLVTNGSLPDVLEELKLPDQLYVSLDAPDEKTFRRINRPHKKDSWEKIL 161 (296)
T ss_pred CceEEEEeCCChHHHHHHhccCCEEEEEeccCCHHHHHHhcCCCCcchHHHHH
Confidence 7999999999999999998779999999999999999999999999999975
No 4
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=3.6e-32 Score=250.98 Aligned_cols=143 Identities=26% Similarity=0.325 Sum_probs=131.2
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
+|.|+|+|+||||+.+|++|++.+.+.|+.++++++.+ ++++.+.+++||++||||+|+||+|+..|+++|++..
T Consensus 3 ~i~I~ygS~tGnae~~A~~l~~~~~~~g~~~~~~~~~~--~~~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~--- 77 (146)
T PRK09004 3 DITLISGSTLGGAEYVADHLAEKLEEAGFSTETLHGPL--LDDLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQK--- 77 (146)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHcCCceEEeccCC--HHHhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcC---
Confidence 59999999999999999999999999999999988765 5778889999999999999999999999999998753
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL 221 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L 221 (534)
..|+|++|||||+||+.| ++||.+++.++++|+++||+++.|++++|...+ .++..|++|.+++++.|
T Consensus 78 ----~~l~g~~~aVfGlGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 78 ----PDLSQVRFAAIGIGSSEY-DTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred ----CCCCCCEEEEEeecCCCH-HHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 358999999999999999 599999999999999999999999999999854 46889999999988754
No 5
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=3.7e-32 Score=252.86 Aligned_cols=146 Identities=23% Similarity=0.223 Sum_probs=128.7
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCC--CeEEEEeccCCCCCCchHHHHHHHHHHhhcC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKE--ALVLIVASSWEDGKPPEAAKFFMNWIDESAN 146 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~--~lvIfv~STYg~G~pPdna~~Fle~L~e~~~ 146 (534)
++.|+|||+|||||.+|++|++.|.+.|+.+.++.. .+..++... +.+||++||||+|+||+|+..|+++|++...
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~--~~~~~~~~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~ 79 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPR--ASLQDLQAFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQLP 79 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCc--CCHhHHHhCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcCc
Confidence 589999999999999999999999999998876543 334444433 7899999999999999999999999987521
Q ss_pred cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHHHHHH
Q 038595 147 DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVVAILK 222 (534)
Q Consensus 147 DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~~~L~ 222 (534)
..|++++||||||||+.|+++||.+++.++++|+++||+|+++++++|... ++++..|.+|.+++++.|.
T Consensus 80 ------~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~l~ 150 (151)
T PRK05723 80 ------AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAALK 150 (151)
T ss_pred ------cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHHhc
Confidence 269999999999999999779999999999999999999999999999985 3689999999999998874
No 6
>PRK08105 flavodoxin; Provisional
Probab=99.98 E-value=1e-31 Score=248.79 Aligned_cols=145 Identities=22% Similarity=0.300 Sum_probs=130.6
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
++.|+|||+|||||.+|++|++.|.+.|+.+.++++++++...+.+.+.+||++||||+|+||+|+..|+++|++.
T Consensus 3 ~i~I~YgS~tGnte~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~---- 78 (149)
T PRK08105 3 KVGIFVGTVYGNALLVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDT---- 78 (149)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhc----
Confidence 5999999999999999999999999999999999998876444455789999999999999999999999999864
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL 221 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L 221 (534)
...|+|++||||||||+.| ++||.+++.++++|+++||++++|++++|...+ +++..|++|.+++...|
T Consensus 79 ---~~~l~~~~~avfGlGds~Y-~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 148 (149)
T PRK08105 79 ---AGYQPNLRYGVIALGDSSY-DNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQWGTLL 148 (149)
T ss_pred ---CcccCCCEEEEEeeecCCH-HHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHHHHHHh
Confidence 2368999999999999999 699999999999999999999999999998754 57899999999955443
No 7
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.96 E-value=1.3e-28 Score=272.15 Aligned_cols=196 Identities=27% Similarity=0.374 Sum_probs=155.3
Q ss_pred ccccccccch--hhhhhhhhhHHHHHhhchhhhhhcCCC-CCCCCCCCCCCCcEEEEEECccchHHHHHHHHHHHHhhCC
Q 038595 20 LTFGKTVESR--NCSRLQEATTFYFAYKSRRLNKFLRHS-DYRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSND 96 (534)
Q Consensus 20 ~~~~~~~~~~--~~~~~l~a~~~y~~~k~~~~~~~~~~~-~~~~~~~~~~~~kVlI~YgSqTGtTE~lAe~La~~L~~~G 96 (534)
+||...--.. .+++-|.+....|+-++......+... .+..+.......+++|+|||+|||||.+|++|++.+.+.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~w~~g~l~~~~~~~~~~~~~~~~~~~~~~~v~IlygSqTGnae~lA~~la~~l~~~g 90 (600)
T PRK10953 11 LPLNPEQLARLQAATTDLSPTQLAWVSGYFWGVLNQQPGAVAATPAPAAEMPGITLISASQTGNARRVAEQLRDDLLAAK 90 (600)
T ss_pred CCCCHHHHHHHHHHhhccCHHHHHHHHHHHhhhhccCCccccccccccCCCCeEEEEEEcCchHHHHHHHHHHHHHHhCC
Confidence 3565542222 455566666666666654322111000 0100011122346999999999999999999999999999
Q ss_pred CceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHH
Q 038595 97 LLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNM 176 (534)
Q Consensus 97 l~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~ 176 (534)
+.+++++++++++.+|..++.+|||+||||+|+||+|+..|+++|.... ...|.|++||||||||++| ++||.
T Consensus 91 ~~~~v~~~~d~~~~~L~~~~~vl~v~ST~G~Ge~Pdna~~F~~~L~~~~------~~~L~~~~faVfGLGDssY-~~Fc~ 163 (600)
T PRK10953 91 LNVNLVNAGDYKFKQIAQEKLLIVVTSTQGEGEPPEEAVALHKFLFSKK------APKLENTAFAVFGLGDTSY-EFFCQ 163 (600)
T ss_pred CCcEEechHhCCHhHhccCCeEEEEECCCCCCCCChhHHHHHHHHhhCc------CcCCCCCEEEEEccCccCH-HHHHH
Confidence 9999999999999999999999999999999999999999999997542 3569999999999999999 59999
Q ss_pred HHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595 177 VAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG 225 (534)
Q Consensus 177 aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~ 225 (534)
++|.+|++|++|||+|+++++.+|.+ .++.|++|.+++++.|....
T Consensus 164 ~~k~ld~rL~~lGA~rl~~~~d~D~~---~e~~~~~W~~~~~~~l~~~~ 209 (600)
T PRK10953 164 AGKDFDSKLAELGAERLLDRVDADVE---YQAAASEWRARVVDALKSRA 209 (600)
T ss_pred HHHHHHHHHHHCCCeEeecccccccc---cHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999988764 57899999999999997653
No 8
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.96 E-value=3.3e-28 Score=268.82 Aligned_cols=148 Identities=33% Similarity=0.583 Sum_probs=137.5
Q ss_pred CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595 68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND 147 (534)
Q Consensus 68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D 147 (534)
.+++|+|||+|||||.+|+.|++.+.+.|+.+++.++++++++++.+++.+||++||||+|+||+|+..|+++|....
T Consensus 59 ~~i~IlygSqTGnae~~A~~l~~~l~~~g~~~~v~~~~d~~~~~l~~~~~li~v~ST~GeGe~Pdna~~F~~~L~~~~-- 136 (597)
T TIGR01931 59 KRVTILYGSQTGNARRLAKRLAEKLEAAGFSVRLSSADDYKFKQLKKERLLLLVISTQGEGEPPEEAISFHKFLHSKK-- 136 (597)
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHhCCCccEEechHHCCHhhcccCceEEEEeCCCCCCcCCHHHHHHHHHHHhCC--
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998642
Q ss_pred ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG 225 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~ 225 (534)
...|++++||||||||++|+ +||.++|.+|++|+++||+|++|++.+|.+ ++..|++|.+++++.|....
T Consensus 137 ----~~~L~~~~~aVfGLGDssY~-~fc~~~k~~d~~L~~lGa~ri~~~~~~D~~---~e~~~~~W~~~~~~~l~~~~ 206 (597)
T TIGR01931 137 ----APKLENLRYSVLGLGDSSYE-FFCQTGKDFDKRLEELGGKRLLPRVDADLD---YDANAAEWRAGVLTALNEQA 206 (597)
T ss_pred ----CcccCCCeEEEEeCCcCCHH-HHhHHHHHHHHHHHHcCCeEeeccccCccC---hHHHHHHHHHHHHHHHHhhc
Confidence 34689999999999999994 999999999999999999999999998864 67899999999999987643
No 9
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=99.95 E-value=1.4e-28 Score=260.36 Aligned_cols=153 Identities=32% Similarity=0.473 Sum_probs=144.6
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
+++|+||||||||+.+|+.|..++.++|+.+.|+.+++||+++|.+..++||||||+|+|++|+|+..||..|...+
T Consensus 2 ~i~ILYGSqTGtA~dvAe~l~Re~~r~~~~~~V~s~Deyd~~~ll~~~~vvFVcSTTGqGe~P~Nmk~~WrfL~rkn--- 78 (574)
T KOG1159|consen 2 KILILYGSQTGTAQDVAESLGREAHRRGLQCLVMSMDEYDVEKLLDERLVVFVCSTTGQGEEPDNMKKFWRFLLRKN--- 78 (574)
T ss_pred ceEEEeecCcccHHHHHHHHHHHHHhccCCceEeeccccCHhHhccCceEEEEEecCCCCCCCccHHHHHHHHhhcc---
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHHHhcCC
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAILKSGGD 226 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L~~~~~ 226 (534)
++...|+++.|||||||||+|+ +||.++|+++++|.+|||+.++|+++||+++. +++..|..|...+|..|....+
T Consensus 79 -Lps~~L~~~~~AvlGLGDSsY~-KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~i~~ 155 (574)
T KOG1159|consen 79 -LPSTILQHMQFAVLGLGDSSYP-KFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKGIYP 155 (574)
T ss_pred -chHHHHhhhhheeeecCcccch-hhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHhhcC
Confidence 5677899999999999999996 99999999999999999999999999999965 6899999999999999987765
No 10
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.95 E-value=6.8e-28 Score=217.27 Aligned_cols=139 Identities=32% Similarity=0.586 Sum_probs=123.6
Q ss_pred EEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC--ccCcCCCCeEEEEeccCCCCCCchHHH-HHHHHHHhhcCcc
Q 038595 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE--PEDLSKEALVLIVASSWEDGKPPEAAK-FFMNWIDESANDF 148 (534)
Q Consensus 72 I~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d--~~dL~~~~lvIfv~STYg~G~pPdna~-~Fle~L~e~~~DF 148 (534)
|+|+|+||||+++|+.|++.|.++|++++++++++++ +.++...+++||++|||+.|.||+++. .|..|+.....+
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~~~~~~- 79 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRERGVEVRVVDLDDFDDSPSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLELKGKE- 79 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHTTSEEEEEEGGGSCHHHHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHHHHHHG-
T ss_pred CEEECCchhHHHHHHHHHHHHHHcCCceeeechhhhhhhhhhhhhhceeeEeecccCCCcchhhhhhhhhhcccccccc-
Confidence 8999999999999999999999999999999999999 448889999999999999999999887 666666543111
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHH
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDW 213 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW 213 (534)
.....|++++|||||+||+.|+ +||.+++.++++|+++|++++.|++++|... ++.++.|++|
T Consensus 80 -~~~~~l~~~~~avfg~Gd~~~~-~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 80 -LSKPDLKGKKYAVFGLGDSGYG-GFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp -GGGSHCTTCEEEEEEEEETTSS-TTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred -ccccccccceeeeeecCCccch-hhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 1245789999999999999997 5999999999999999999999999999986 4678999999
No 11
>PRK07308 flavodoxin; Validated
Probab=99.93 E-value=3.9e-25 Score=202.06 Aligned_cols=141 Identities=20% Similarity=0.280 Sum_probs=126.2
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
++.|+|+|+||||+++|+.|++.|.+.|+.+++.++++.++.++.+++.+||++|||+.|.+|+++..|+++|++.
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~~l~~~---- 78 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDASDFEDADIAIVATYTYGDGELPDEIVDFYEDLADL---- 78 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCHhHhccCCEEEEEeCccCCCCCCHHHHHHHHHHhcC----
Confidence 5899999999999999999999999999999999999998888888999999999999999999999999999763
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA 219 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~ 219 (534)
.|++++|+|||+||+.|+ +||.+++.++++|.++||+++.|...++.... +.-+.+.+|.++|.+
T Consensus 79 -----~l~~k~~~vfG~Gd~~y~-~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 144 (146)
T PRK07308 79 -----DLSGKIYGVVGSGDTFYD-YFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEELAA 144 (146)
T ss_pred -----CCCCCEEEEEeeCCCCHH-HHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 578999999999999995 99999999999999999999999999988743 223456677777654
No 12
>PRK06703 flavodoxin; Provisional
Probab=99.91 E-value=2.3e-23 Score=191.17 Aligned_cols=145 Identities=21% Similarity=0.247 Sum_probs=130.5
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
+++|+|+|+||||+++|+.|++.|.+.|+.++++++.+.++.++.+++.+||++|||+.|.+|+++..|+++|...
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~---- 78 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMDAEELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENI---- 78 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCCHHHHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcC----
Confidence 5899999999999999999999999999999999999988888889999999999999999999999999998643
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC--CcHHHHHHHHHHHHHHHHh
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG--ELDVVFEDWSKRVVAILKS 223 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g--~~e~~f~eW~~~L~~~L~~ 223 (534)
.+++++++|||+||+.|+ +||.+++.++++|+++|++++.+...++...+ +..+.+.+|.++|.+.+++
T Consensus 79 -----~l~~k~~~vfg~g~~~y~-~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 149 (151)
T PRK06703 79 -----DLSGKKVAVFGSGDTAYP-LFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKFAQ 149 (151)
T ss_pred -----CCCCCEEEEEccCCCChH-HHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHHHh
Confidence 578999999999999996 99999999999999999999998888887642 3446788999999877653
No 13
>PRK09271 flavodoxin; Provisional
Probab=99.87 E-value=2.6e-21 Score=180.36 Aligned_cols=140 Identities=17% Similarity=0.267 Sum_probs=118.8
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc----CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhh
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE----DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDES 144 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~----dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~ 144 (534)
+++|+|+|+||||+++|+.|++.|.+.|+.+++.++.+.+.. ++.+++++||++|||+.|.+|+++..|+++|.+.
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~ 81 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAET 81 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999988776633 4456789999999999999999999999999763
Q ss_pred cCcccccccCCCCCeEEEEEecCcchH-HHHHHHHHHHHHHHHHcCCceecceEEeeCCCCC--cHHHHHHHHHHHHHHH
Q 038595 145 ANDFRVGSLLLSNCKFAVFGVGSKSYE-KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGE--LDVVFEDWSKRVVAIL 221 (534)
Q Consensus 145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~-e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~--~e~~f~eW~~~L~~~L 221 (534)
..++++++|||+||+.|+ ++||.+++.++++|..+ .|..+++...+. ..+.+.+|..++++.+
T Consensus 82 ---------~~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~-----~~~l~~~~~p~~~~d~~~~~~~~~~~~~~~ 147 (160)
T PRK09271 82 ---------IGKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSS-----YPRLKIEQMPHGERDAAAIDNWTDKVLALC 147 (160)
T ss_pred ---------hccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhcc-----CCceeeecCCccchhHHHHHHHHHHHHHHh
Confidence 236789999999999996 69999999999999753 466777765321 2378999999999988
Q ss_pred H
Q 038595 222 K 222 (534)
Q Consensus 222 ~ 222 (534)
.
T Consensus 148 ~ 148 (160)
T PRK09271 148 K 148 (160)
T ss_pred h
Confidence 3
No 14
>PRK12359 flavodoxin FldB; Provisional
Probab=99.87 E-value=5.2e-21 Score=182.04 Aligned_cols=143 Identities=20% Similarity=0.266 Sum_probs=121.1
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
++.|+|+|.|||||.+|+.|++.+.. -.++++++++++++++..++++||++|||+.|++|+++..|+..|.+
T Consensus 2 ki~I~Y~S~TGNTe~vAe~I~~~lg~--~~v~v~~i~~~~~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~----- 74 (172)
T PRK12359 2 KIGLFYGSSTCYTEMAAEKIRDIIGE--ELVDLHNLKDDPPKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDD----- 74 (172)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHhCC--CeEEEEEcccCChhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhh-----
Confidence 48999999999999999999999842 24789999999998999999999999999999999999999888764
Q ss_pred cccccCCCCCeEEEEEecCc-chHHHHHHHHHHHHHHHHHcCCceecce-----------E-----------EeeCCC--
Q 038595 149 RVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGAGEVLPV-----------V-----------EGDVDG-- 203 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs-~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl-----------g-----------~gD~~~-- 203 (534)
..|+|+++||||+||+ .|+++||.+++.++++|.+.||+.+... . .+|+..
T Consensus 75 ----~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD~~nq~ 150 (172)
T PRK12359 75 ----LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALDEVNQY 150 (172)
T ss_pred ----CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEcCCCch
Confidence 3689999999999998 6999999999999999999999877421 1 133332
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 038595 204 GELDVVFEDWSKRVVAILK 222 (534)
Q Consensus 204 g~~e~~f~eW~~~L~~~L~ 222 (534)
+..+++++.|.++|.+.+.
T Consensus 151 ~~t~~ri~~W~~~~~~~~~ 169 (172)
T PRK12359 151 DLSDERIQQWCEQILLEMA 169 (172)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 2257899999999987764
No 15
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.86 E-value=3.4e-21 Score=171.94 Aligned_cols=137 Identities=24% Similarity=0.322 Sum_probs=118.9
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc-hHHHHHHHHHHhhcCcc
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP-EAAKFFMNWIDESANDF 148 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP-dna~~Fle~L~e~~~DF 148 (534)
|+|+|+|+||||+++|+.|++.+.+.|++++++++.+.++.++..++.+||++|||+.|.+| +++..|+++|...
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~---- 76 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADAEDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDI---- 76 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCHHHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhC----
Confidence 57999999999999999999999999999999999999888888899999999999999998 8899999998642
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHH
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRV 217 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L 217 (534)
.++|++++|||+|++.|+ ||.+++.++++|+++|++++.+....+.... +..+.+.+|.++|
T Consensus 77 -----~~~gk~~~vfgt~g~~~~--f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 77 -----DLGGKKVALFGSGDWGYE--FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKDL 139 (140)
T ss_pred -----CCCCCEEEEEecCCCCch--hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHHh
Confidence 478999999999998884 9999999999999999999998777765432 2234566676554
No 16
>PRK06756 flavodoxin; Provisional
Probab=99.86 E-value=1e-20 Score=173.05 Aligned_cols=143 Identities=22% Similarity=0.313 Sum_probs=123.2
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-ccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-PEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND 147 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D 147 (534)
+++|+|+|+||||+++|+.|++.|.+.|+.++++++.+.+ ..++.+++.+||++|||+.|.+|+++..|++.|..
T Consensus 3 kv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~---- 78 (148)
T PRK06756 3 KLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSPEASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDS---- 78 (148)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccCCHHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhc----
Confidence 5999999999999999999999999999999999998763 45677889999999999999999989999888754
Q ss_pred ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHHHH
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVAIL 221 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~~L 221 (534)
..|+|+++++||+|++.|+ +||.+.+.+.+.|.++|++.+.+...+....+ +.-+.+.+|.+.|.++|
T Consensus 79 -----~~l~~k~~~~fgt~~~~y~-~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~p~~~d~~~~~~~~~~~~~~~ 147 (148)
T PRK06756 79 -----IDLTGKKAAVFGSCDSAYP-KYGVAVDILIEKLQERGAAVVLEGLKVELTPEDEDVEKCLQFGAEFVKHL 147 (148)
T ss_pred -----CCCCCCEEEEEeCCCCchH-HHHHHHHHHHHHHHHCCCEEcCCCeEEecCCCHHHHHHHHHHHHHHHHhc
Confidence 2578999999999999996 99999999999999999999999888877643 12345567777776654
No 17
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.85 E-value=2.3e-20 Score=175.14 Aligned_cols=117 Identities=24% Similarity=0.325 Sum_probs=105.3
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
++.|+|+|+||||+++|+.|++.|.+ ..++++++++.++.++.+++++||++|||+.|.+|+++..|++.|..
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~--~~~~i~~~~~~~~~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~----- 73 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE--DDVDVFNIAKASKEDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEE----- 73 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEcccCCHhHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhc-----
Confidence 48999999999999999999999974 46889999998888888999999999999999999999999888754
Q ss_pred cccccCCCCCeEEEEEecCc-chHHHHHHHHHHHHHHHHHcCCceecce
Q 038595 149 RVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGAGEVLPV 196 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs-~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl 196 (534)
..|+|++++|||+||+ .|+++||.+++.+++.|+++|++.+...
T Consensus 74 ----~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~ 118 (167)
T TIGR01752 74 ----LDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFW 118 (167)
T ss_pred ----CCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEcee
Confidence 3678999999999998 5888999999999999999999988643
No 18
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.84 E-value=3.7e-20 Score=168.55 Aligned_cols=132 Identities=21% Similarity=0.325 Sum_probs=109.1
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceE-EECCCCCC--ccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFD-LVDPQTYE--PEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESA 145 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~-V~dL~d~d--~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~ 145 (534)
+++|+|+|+||||+++|+.|++.|...|+.++ +.++.+++ +.++.+++.+||++|||+.|.+|+++..|+++|..
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~-- 79 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGY-- 79 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc--
Confidence 48999999999999999999999999998887 66776542 34566789999999999999999999999888742
Q ss_pred CcccccccCCCCCeEEEEEecCcchH-HHHHHHHHHHHHHHHHcCCceecceEEeeCCCC--CcHHHHHHHHHHH
Q 038595 146 NDFRVGSLLLSNCKFAVFGVGSKSYE-KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG--ELDVVFEDWSKRV 217 (534)
Q Consensus 146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~-e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g--~~e~~f~eW~~~L 217 (534)
++++|||||+||+.|+ ++||.+++.++++|..+ .|..+++...+ .....+.+|.+++
T Consensus 80 ----------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~-----~~~~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 80 ----------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSS-----HPVLKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred ----------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCc-----CCceeEecCCcccccHHHHHHHHHHh
Confidence 5789999999999996 69999999999999775 45667766422 1246788998876
No 19
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.81 E-value=8.4e-20 Score=201.37 Aligned_cols=151 Identities=31% Similarity=0.551 Sum_probs=139.1
Q ss_pred CCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcC
Q 038595 67 PNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAN 146 (534)
Q Consensus 67 ~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~ 146 (534)
...++|+|||+|||++.+|+.+++.+...|+++.+.+++++++.++.....++|++||+|+|++|+|+..|+++|...
T Consensus 47 ~~~~~il~~sqtG~a~~~A~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~st~geGe~p~na~~f~~~l~~~-- 124 (587)
T COG0369 47 NKPITVLYGSQTGNAEGLAEELAKELEAAGLQVLVASLDDYKPKDIAEERLLLFVVSTQGEGEPPDNAVAFHEFLKGK-- 124 (587)
T ss_pred CCceEEEEccCCccHHHHHHHHHHHHHhcCCceeecchhhcChhhHHhhhceEEEEccccCCCCCCchHHHHHHhccc--
Confidence 445999999999999999999999999999999999999999999876678999999999999999999999999864
Q ss_pred cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcCC
Q 038595 147 DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGGD 226 (534)
Q Consensus 147 DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~~ 226 (534)
....|.++.|||||+||++|. .||.+++.++++|..+||.++.+++.+|.. +++.....|...+++.+....+
T Consensus 125 ----~a~~L~~l~yav~~lGDssy~-~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~--~~e~~~~~w~~~~~~~l~~~~~ 197 (587)
T COG0369 125 ----KAPKLDGLRYAVLGLGDSSYE-FFCQAGKDFDRRLQELGATRLFPRVEADVQ--DFEAAAAPWRDDVLELLKSKFP 197 (587)
T ss_pred ----ccccccccchhhhcCCccchh-hhhccchhhHHHHHhcCcccccCccccccc--ccchhhhHHHHHHHHHHHhhcc
Confidence 246799999999999999997 999999999999999999999999999985 3678899999999999987664
No 20
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.79 E-value=1.8e-18 Score=159.80 Aligned_cols=143 Identities=20% Similarity=0.315 Sum_probs=120.2
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
++.|+|+|+|||||.+|+.|++.|.+.++.+.+......+..++..++.+++++|||+.|+.|+++..|+..|..
T Consensus 3 ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~t~~~ge~~~~~~~f~~~~~~----- 77 (151)
T COG0716 3 KILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDDLLESYDELLLGTPTWGAGELPDDWYDFIEELEP----- 77 (151)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchhhhccCCEEEEEeCCCCCCcCCccHHHHHHHhcc-----
Confidence 599999999999999999999999999998865555555544455789999999999999999989999988865
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcC--CceecceEEe--eCC-CCCcHHHHHHHHHHHHHH
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELG--AGEVLPVVEG--DVD-GGELDVVFEDWSKRVVAI 220 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLG--A~rV~plg~g--D~~-~g~~e~~f~eW~~~L~~~ 220 (534)
..++++.||+||+||+.|..+||.+...+..+|+..| +....|.... |.. ++..+.++.+|.++++..
T Consensus 78 ----~~~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~~~~ 150 (151)
T COG0716 78 ----IDFKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQILNE 150 (151)
T ss_pred ----cCcCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHHHhh
Confidence 3679999999999999985349999999999999999 6667776666 333 345678999999998764
No 21
>PRK09267 flavodoxin FldA; Validated
Probab=99.79 E-value=2.1e-18 Score=161.11 Aligned_cols=142 Identities=26% Similarity=0.321 Sum_probs=117.3
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
+++|+|+|+||||+++|+.|++.|.. ..++++++.+.++.++..++.+||++|||+.|.+|+.+..|++.+..
T Consensus 3 ki~IiY~S~tGnT~~vA~~Ia~~l~~--~~~~~~~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~----- 75 (169)
T PRK09267 3 KIGIFFGSDTGNTEDIAKMIQKKLGK--DVADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEE----- 75 (169)
T ss_pred eEEEEEECCCChHHHHHHHHHHHhCC--CceEEEEhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhc-----
Confidence 58999999999999999999999964 36789999988877888899999999999999999988889887643
Q ss_pred cccccCCCCCeEEEEEecCc-chHHHHHHHHHHHHHHHHHcCCceecce---E-----------------EeeCCC--CC
Q 038595 149 RVGSLLLSNCKFAVFGVGSK-SYEKTFNMVAKDLSKKMRELGAGEVLPV---V-----------------EGDVDG--GE 205 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs-~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl---g-----------------~gD~~~--g~ 205 (534)
..|+++++++||+||+ .|+++||.+.+.+.+.|.+.|++.+... + ..|.+. +-
T Consensus 76 ----~~l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~~~~~~~ 151 (169)
T PRK09267 76 ----IDFSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDEDNQSEL 151 (169)
T ss_pred ----CCCCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecCCCchhh
Confidence 3688999999999998 5888999999999999999998766531 1 122221 12
Q ss_pred cHHHHHHHHHHHHHHH
Q 038595 206 LDVVFEDWSKRVVAIL 221 (534)
Q Consensus 206 ~e~~f~eW~~~L~~~L 221 (534)
.+.++++|.++|.+.+
T Consensus 152 td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 152 TDERIEAWVKQIKPEF 167 (169)
T ss_pred hHHHHHHHHHHHHHHh
Confidence 3678899999987754
No 22
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=99.73 E-value=5.5e-18 Score=187.82 Aligned_cols=148 Identities=31% Similarity=0.519 Sum_probs=128.3
Q ss_pred CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcC
Q 038595 68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-SKEALVLIVASSWEDGKPPEAAKFFMNWIDESAN 146 (534)
Q Consensus 68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~ 146 (534)
.++.|+|+|+||+++.+|.+|.+.+ .-++.+.+.+.+++.-++ ....+++|+++|||.|.||+|++.|.+||.+...
T Consensus 47 ~~~~v~~~s~tgtae~~a~~l~~~~--~~~~~~~~~~~d~~~~~l~~~~~l~~~~~at~g~gd~~dn~~~f~~~l~~~~~ 124 (645)
T KOG1158|consen 47 VKATVLYGSQTGTAEDFAKRLSEIF--ARFELKVLKVADYDLYALEDHEKLLVVVLATYGEGDPPDNAEAFYQSLTELKV 124 (645)
T ss_pred eeEEEEeccCCCCHHHHHHHHHHHh--hhccccceeecchhhcccccccceeeeeeehhcCCCCCccHHHHHHHHhhccC
Confidence 4599999999999999999999999 445666666666665555 4567999999999999999999999999988642
Q ss_pred cccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHhcC
Q 038595 147 DFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKSGG 225 (534)
Q Consensus 147 DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~~~ 225 (534)
.+...++|+|||+|++.|+ +||.+|+.+|+.|.++||+|++.++.||+.. +.+++|..|++.+++.++..+
T Consensus 125 ------~~~~~~~~~vFglg~~~y~-~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~-~~e~~f~~w~~~~~~~~~~~f 195 (645)
T KOG1158|consen 125 ------LPSSLLRYAVFGLGNSTYE-HFNAFAKLVDNLLEELGANRLFQLGLGDDDA-GLEEDFRTWKKPLLPELCETF 195 (645)
T ss_pred ------chhhhhhHHHhhccccchh-hhHHHHHHHHHHHHHhhhhhhhccccccccc-cchhHHHHHHHHHhHhhhhee
Confidence 2344489999999999995 9999999999999999999999999999976 468999999999999887654
No 23
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.72 E-value=1.8e-17 Score=155.55 Aligned_cols=121 Identities=17% Similarity=0.330 Sum_probs=99.4
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhC--CCceEEECCCCCCccC---cCCCCeEEEEeccC-CCCCCchHHHHHHHHHH
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPED---LSKEALVLIVASSW-EDGKPPEAAKFFMNWID 142 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~d---L~~~~lvIfv~STY-g~G~pPdna~~Fle~L~ 142 (534)
.+.|+|+|+||||++||++|...+.++ ++++..+++.++..++ +.....+|+++||| +.|.+|+++.+ +|+.
T Consensus 3 ~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~p~vli~pTY~~gG~~~~~~~~--~~vp 80 (154)
T PRK02551 3 TITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETTDFFPETEPFVAFLPTYLEGGNGIDNGDV--EILT 80 (154)
T ss_pred ceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccccccccCCCEEEEEeeecCCCCCcccCcc--ccch
Confidence 489999999999999999999876542 4556667766664322 45667899999999 88888888766 8888
Q ss_pred hhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595 143 ESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP 195 (534)
Q Consensus 143 e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p 195 (534)
+...||+..+.. ++..+||||+||++|+++||.+|+.+++. ++...++.
T Consensus 81 ~~v~dFL~~~~N-~~~~~gVigsGNrNfg~~F~~aa~~ia~~---~~vP~L~~ 129 (154)
T PRK02551 81 TPLGDFIAYHDN-AKRCLGIIGSGNRNFNNQYCLTAKQYAKR---FGFPMLAD 129 (154)
T ss_pred HHHHHHHcchhh-hhheEEEEeecccHHHHHHHHHHHHHHHH---cCCCEEEE
Confidence 888899887666 78899999999999999999999999987 67666654
No 24
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.65 E-value=7.9e-16 Score=162.38 Aligned_cols=140 Identities=15% Similarity=0.174 Sum_probs=118.8
Q ss_pred CCcEEEEEECccchHHHHHHHHHHHHh--hCCCceEEECCCCCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHH
Q 038595 67 PNKGKLFFISQTGTSKTLAKRLHALLT--SNDLLFDLVDPQTYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNW 140 (534)
Q Consensus 67 ~~kVlI~YgSqTGtTE~lAe~La~~L~--~~Gl~v~V~dL~d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~ 140 (534)
.++++|+|+|+||||+++|+.|++.+. ..|++++++++.+.+++++ .+.+.+||++|||+.|.+|+ +..|+++
T Consensus 247 ~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~~~~~~~-~~~~l~~ 325 (394)
T PRK11921 247 ENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTINRGILSS-TAAILEE 325 (394)
T ss_pred cCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcCccccHH-HHHHHHH
Confidence 356999999999999999999999998 7899999999999987764 45889999999999998865 8889888
Q ss_pred HHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595 141 IDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA 219 (534)
Q Consensus 141 L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~ 219 (534)
|... .++|+.+|+||+ |+ +||.+.+.+.+.|+++|++.+.|...+..... +..+.+.+|.++|.+
T Consensus 326 l~~~---------~~~~K~~a~FGs----yg-w~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~ 391 (394)
T PRK11921 326 IKGL---------GFKNKKAAAFGS----YG-WSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAE 391 (394)
T ss_pred hhcc---------CcCCCEEEEEec----CC-CccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 8653 578999999997 54 67999999999999999999998777766532 234567889998876
Q ss_pred HH
Q 038595 220 IL 221 (534)
Q Consensus 220 ~L 221 (534)
.|
T Consensus 392 ~~ 393 (394)
T PRK11921 392 SL 393 (394)
T ss_pred hh
Confidence 54
No 25
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.62 E-value=6.1e-15 Score=134.15 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=75.9
Q ss_pred EEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc
Q 038595 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG 151 (534)
Q Consensus 72 I~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~ 151 (534)
|+|+|+||||++|+++ .|+++..+.+++.++.++ +++.+++ ++|||+|+.|+.+..|++.+++
T Consensus 1 IvY~S~TGNte~fv~~-------lg~~~~~i~~~~~d~~~~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n-------- 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEK-------LGFQHIRIPVDETDDIHV-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN-------- 63 (125)
T ss_pred CEEEcccccHHHHHHH-------cCCCcEEeecCCcchhhc-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh--------
Confidence 6899999999999444 355666677776665555 5666655 9999999999999999877642
Q ss_pred ccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHH
Q 038595 152 SLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRE 187 (534)
Q Consensus 152 ~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~k 187 (534)
+.+||||+||+.|+++||.+++.+.+.+..
T Consensus 64 ------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 689999999999988999999999999766
No 26
>PRK05569 flavodoxin; Provisional
Probab=99.61 E-value=1.1e-14 Score=131.68 Aligned_cols=135 Identities=15% Similarity=0.110 Sum_probs=106.1
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc-hHHHHHHHHHHhhcCc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP-EAAKFFMNWIDESAND 147 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP-dna~~Fle~L~e~~~D 147 (534)
+++|+|+|.||||+++|+.|++.+.+.|..++++++.+.+..++.+++.+||++|||+.+.+| +.+..|++.|...
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~--- 79 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLT--- 79 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhcc---
Confidence 589999999999999999999999989999999999999888888999999999999988654 6788898887542
Q ss_pred ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHH
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRV 217 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L 217 (534)
.++|+.+++||.+... ++.+.+.+.+.|.++|++.+.+ ..+....+ +..+.+.+|.++|
T Consensus 80 ------~~~~K~v~~f~t~g~~----~~~~~~~~~~~l~~~g~~~~~~-~~~~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 80 ------PNENKKCILFGSYGWD----NGEFMKLWKDRMKDYGFNVIGD-LAVNESPNKEELNSAKELGKKL 139 (141)
T ss_pred ------CcCCCEEEEEeCCCCC----CCcHHHHHHHHHHHCCCeEeee-EEEccCCCHHHHHHHHHHHHHH
Confidence 4689999999975222 2456788899999999988765 34332221 1223455665555
No 27
>PRK05568 flavodoxin; Provisional
Probab=99.59 E-value=2.4e-14 Score=129.47 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=107.5
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCc-hHHHHHHHHHHhhcCc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPP-EAAKFFMNWIDESAND 147 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pP-dna~~Fle~L~e~~~D 147 (534)
+++|+|.|+||||+++|+.|++.+.+.|+.++++++.+.+..++.+++.+||++|||+.|.+| ..+..|++.+..
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~---- 78 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISS---- 78 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhh----
Confidence 589999999999999999999999999999999999999888888999999999999988864 678888887643
Q ss_pred ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHH
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVV 218 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~ 218 (534)
.++++++++||.. .|+ ...+.+.+.+.|+++|++.+.+...+.... .+..+.+.+|.+.|.
T Consensus 79 ------~~~~k~~~~f~t~--G~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~l~~~~~~g~~l~ 140 (142)
T PRK05568 79 ------LVKGKKLVLFGSY--GWG--DGEWMRDWVERMEGYGANLVNEGLIVNNTPEGEGIEKCKALGEALA 140 (142)
T ss_pred ------hhCCCEEEEEEcc--CCC--CChHHHHHHHHHHHCCCEEeCCcEEEecCCCHHHHHHHHHHHHHHH
Confidence 3588999999972 332 134578889999999999888755544332 122345566766654
No 28
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.57 E-value=1.8e-14 Score=156.25 Aligned_cols=140 Identities=9% Similarity=0.132 Sum_probs=117.2
Q ss_pred CCcEEEEEECccchHHHHHHHHHHHHhhC--CCceEEECCCCCCccCcC----CCCeEEEEeccCCCCCCchHHHHHHHH
Q 038595 67 PNKGKLFFISQTGTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPEDLS----KEALVLIVASSWEDGKPPEAAKFFMNW 140 (534)
Q Consensus 67 ~~kVlI~YgSqTGtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~dL~----~~~lvIfv~STYg~G~pPdna~~Fle~ 140 (534)
..+++|+|+|+|||||++|+.|++.+++. |++++++++++.+++++. +++.+||++|||+.+.+| .+..|++.
T Consensus 251 ~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~~ 329 (479)
T PRK05452 251 EDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLEE 329 (479)
T ss_pred cCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccCCcchH-HHHHHHHH
Confidence 34699999999999999999999999876 678999999999887754 478999999999988888 48889888
Q ss_pred HHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595 141 IDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA 219 (534)
Q Consensus 141 L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~ 219 (534)
|... .|+|+.++|||+ |+ ++|.+++.+.++|+.+|++.+ +...+..... +..+.+.++.++|.+
T Consensus 330 l~~~---------~l~gK~~~vFGS----yg-w~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~ 394 (479)
T PRK05452 330 ITGL---------RFRNKRASAFGS----HG-WSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIAR 394 (479)
T ss_pred hhcc---------CcCCCEEEEEEC----CC-cCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHH
Confidence 8653 579999999997 44 579999999999999999986 4566666532 234677889999998
Q ss_pred HHH
Q 038595 220 ILK 222 (534)
Q Consensus 220 ~L~ 222 (534)
++.
T Consensus 395 ~~~ 397 (479)
T PRK05452 395 QWA 397 (479)
T ss_pred HHh
Confidence 887
No 29
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.53 E-value=3e-14 Score=146.23 Aligned_cols=132 Identities=23% Similarity=0.391 Sum_probs=112.1
Q ss_pred ceeeecc--CCeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec
Q 038595 339 HSFYGIE--SHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD 416 (534)
Q Consensus 339 ~~fygi~--s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~ 416 (534)
|.-+|+- ...-+|..||.-||.+|+||.........+.|...+.||+.+++..- .+..+||. |
T Consensus 96 ~~AFGlIdRGtNviqVRp~tgCnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~-----kVa~~Kgk-g--------- 160 (414)
T COG2100 96 HTAFGLIDRGTNVIQVRPSTGCNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFE-----KVARFKGK-G--------- 160 (414)
T ss_pred ceeeeEEecCceEEEecCCccccceeEEEeccCCcccceeccceEecHHHHHHHHH-----HHHhhhCC-C---------
Confidence 6677774 78899999999999999999999888888889999999999888763 35667763 2
Q ss_pred cccccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEcCCCC-
Q 038595 417 FFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVTNAQF- 493 (534)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvTNGtl- 493 (534)
+ -..|.+.|||+|||+|.+|++.|++. |+. +.+.|||++
T Consensus 161 --------------------------l------------EaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L 202 (414)
T COG2100 161 --------------------------L------------EAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLL 202 (414)
T ss_pred --------------------------e------------EEEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceec
Confidence 2 25688899999999999999999997 776 889999997
Q ss_pred -HHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595 494 -PDKIKLLKP--VTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 494 -pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r 523 (534)
.+.+++|.+ +|.+++||||.||+.-+.+.+
T Consensus 203 ~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G 235 (414)
T COG2100 203 SKKLVDELEEAGLDRINLSVDALDPKLAKMLAG 235 (414)
T ss_pred cHHHHHHHHHhCCceEEeecccCCHHHHHHhcC
Confidence 456777775 899999999999999888876
No 30
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.53 E-value=8.8e-14 Score=127.83 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=89.5
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCC----CCCchHHHHHHHHHHhh
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWED----GKPPEAAKFFMNWIDES 144 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~----G~pPdna~~Fle~L~e~ 144 (534)
.+.|+|.|.||||+++|++|... ...+++.+. +.+.....++|++|||+. |..|+....|++.+.+
T Consensus 2 ~~~I~Y~S~TGNt~~f~~kl~~~-------~~~i~i~~~--~~~~~~~~~~lv~PTy~~g~~~G~vP~~v~~Fl~~~~n- 71 (134)
T PRK03600 2 MMLVYFSSKTGNTHRFVQKLGLP-------ATRIPINER--ERLEVDEPYILITPTYGGGGTAGAVPKQVIRFLNDEHN- 71 (134)
T ss_pred cEEEEEECCChhHHHHHHHhCCc-------ceEEecCCC--ccccCCCCEEEEEeccCCCCcCCcccHHHHHHHhcccc-
Confidence 47999999999999999988654 235556542 235556789999999999 6999988888766332
Q ss_pred cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC-CcHHHHHHHHHHHHH
Q 038595 145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG-ELDVVFEDWSKRVVA 219 (534)
Q Consensus 145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g-~~e~~f~eW~~~L~~ 219 (534)
+...++|||+||++|+++||.+++.+.+.+. ... +...+-... ...+.+.+|.++++.
T Consensus 72 -----------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~---vp~---l~k~El~gt~~Dv~~~~~~~~~~~~ 130 (134)
T PRK03600 72 -----------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ---VPL---LYRFELSGTNEDVENVRKGVEEFWQ 130 (134)
T ss_pred -----------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC---CCe---EEEEecCCCHHHHHHHHHHHHHHHh
Confidence 2358999999999998899999999999855 222 234443311 123456777777743
No 31
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.46 E-value=2.6e-13 Score=140.73 Aligned_cols=76 Identities=20% Similarity=0.244 Sum_probs=65.2
Q ss_pred ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595 455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFW 530 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w 530 (534)
..+.|++ |||+|+|++.+++++++++|+.+.|+|||++ ++.++.|.+ ++.|.||||+.++++|+++++. +..|
T Consensus 55 ~~v~~~G-GEPll~~~~~~ii~~~~~~g~~~~l~TNG~ll~~e~~~~L~~~g~~~v~iSldg~~~e~~d~~rg~--~g~f 131 (358)
T TIGR02109 55 LQLHFSG-GEPLARPDLVELVAHARRLGLYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGY--KNAF 131 (358)
T ss_pred cEEEEeC-ccccccccHHHHHHHHHHcCCeEEEEeCCccCCHHHHHHHHhCCCCEEEEeCcCCCHHHHHHhcCC--ccHH
Confidence 4567777 9999999999999999999999999999997 678888875 7899999999999999999762 3356
Q ss_pred hhc
Q 038595 531 ERF 533 (534)
Q Consensus 531 ~~~ 533 (534)
+++
T Consensus 132 ~~v 134 (358)
T TIGR02109 132 EQK 134 (358)
T ss_pred HHH
Confidence 654
No 32
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=99.43 E-value=6.4e-13 Score=139.07 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=64.8
Q ss_pred ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595 455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFW 530 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w 530 (534)
..+.|++ |||+|+|++.+++++++++|+.+.|.|||++ ++.++.|.. ++.+.||||+.++++|+++++. +..|
T Consensus 64 ~~v~~~G-GEPll~~~~~~il~~~~~~g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~iSldg~~~e~~d~irg~--~g~f 140 (378)
T PRK05301 64 LQLHFSG-GEPLLRKDLEELVAHARELGLYTNLITSGVGLTEARLAALKDAGLDHIQLSFQDSDPELNDRLAGT--KGAF 140 (378)
T ss_pred cEEEEEC-CccCCchhHHHHHHHHHHcCCcEEEECCCccCCHHHHHHHHHcCCCEEEEEecCCCHHHHHHHcCC--CchH
Confidence 4566776 9999999999999999999999999999996 678888865 7899999999999999999863 2356
Q ss_pred hhc
Q 038595 531 ERF 533 (534)
Q Consensus 531 ~~~ 533 (534)
+++
T Consensus 141 ~~~ 143 (378)
T PRK05301 141 AKK 143 (378)
T ss_pred HHH
Confidence 654
No 33
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=99.42 E-value=4.5e-13 Score=138.39 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=62.8
Q ss_pred CceEEEeecCCCCCCccHHHHHHHHHhcC-C-cEEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCc
Q 038595 454 PRHCALSLVGEPIMYPEINTLVDELHRRR-I-STFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGD 528 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~L~elI~~lk~~g-i-~~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~ 528 (534)
++++.|++ |||+|+|+|.++++++++.+ + .+.+.|||++ .+.++.|.. ++.+.||||+.+++.|++|.++ +
T Consensus 62 v~~I~~tG-GEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~---g 137 (329)
T PRK13361 62 VRKIRLTG-GEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRN---G 137 (329)
T ss_pred CCEEEEEC-cCCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCC---C
Confidence 35677776 99999999999999999985 4 6899999997 556667765 8999999999999999999974 3
Q ss_pred hhhhc
Q 038595 529 FWERF 533 (534)
Q Consensus 529 ~w~~~ 533 (534)
.|+++
T Consensus 138 ~~~~v 142 (329)
T PRK13361 138 RLERV 142 (329)
T ss_pred CHHHH
Confidence 35543
No 34
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=99.42 E-value=7.5e-13 Score=134.29 Aligned_cols=76 Identities=21% Similarity=0.335 Sum_probs=64.0
Q ss_pred CceEEEeecCCCCCCccHHHHHHHHHhcCC-cEEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCch
Q 038595 454 PRHCALSLVGEPIMYPEINTLVDELHRRRI-STFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDF 529 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~L~elI~~lk~~gi-~~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~ 529 (534)
++++.|++ |||+++|++.++|+.+++.|+ .+.+.|||++ ++.++.|.. ++.+.||||+.+++.|++|++ ++.
T Consensus 57 i~~I~~tG-GEPll~~~l~~iv~~l~~~g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~---~~~ 132 (302)
T TIGR02668 57 VRKVKITG-GEPLLRKDLIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG---RGA 132 (302)
T ss_pred CCEEEEEC-cccccccCHHHHHHHHHhCCCceEEEEcCchHHHHHHHHHHHCCCCEEEEEecCCCHHHhhhccC---CCc
Confidence 45678887 999999999999999999999 8999999997 455666653 899999999999999999998 334
Q ss_pred hhhc
Q 038595 530 WERF 533 (534)
Q Consensus 530 w~~~ 533 (534)
|+++
T Consensus 133 ~~~v 136 (302)
T TIGR02668 133 LDRV 136 (302)
T ss_pred HHHH
Confidence 5543
No 35
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=99.40 E-value=1.3e-12 Score=137.80 Aligned_cols=121 Identities=21% Similarity=0.318 Sum_probs=89.2
Q ss_pred CCeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccc
Q 038595 346 SHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSS 425 (534)
Q Consensus 346 s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~ 425 (534)
.|..+.+.++..||.+|.||........ ......-++++|..-+ +.. .. .|
T Consensus 56 ~~~~lrisvT~~CNlrC~yC~~~~~~~~--~~~~~~ls~eei~~~i-~~~----~~-~G--------------------- 106 (373)
T PLN02951 56 RHNYLRISLTERCNLRCQYCMPEEGVEL--TPKSHLLSQDEIVRLA-GLF----VA-AG--------------------- 106 (373)
T ss_pred cccEEEEEEcCCcCcCCCCCCCCcCCCC--CCccccCCHHHHHHHH-HHH----HH-CC---------------------
Confidence 4556778888999999999987532211 1112234566665532 211 11 12
Q ss_pred ccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEcCCCC-HHHHhhcCC
Q 038595 426 AIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVTNAQF-PDKIKLLKP 502 (534)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvTNGtl-pe~l~~L~~ 502 (534)
++.+.|++ |||+|+|+|.++|+++++. |+. +.|.|||++ ++.+++|.+
T Consensus 107 ----------------------------v~~I~~tG-GEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~ 157 (373)
T PLN02951 107 ----------------------------VDKIRLTG-GEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKE 157 (373)
T ss_pred ----------------------------CCEEEEEC-CCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHh
Confidence 34577787 9999999999999999997 885 889999996 566777765
Q ss_pred --CceEEEEeeCCCHHHHHhhcCC
Q 038595 503 --VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 503 --v~qlyvSlDA~~~e~y~~I~rP 524 (534)
++.+.||||+.+++.|++|.|.
T Consensus 158 aGld~VnISLDsl~~e~~~~itr~ 181 (373)
T PLN02951 158 AGLTSLNISLDTLVPAKFEFLTRR 181 (373)
T ss_pred CCCCeEEEeeccCCHHHHHHHhcC
Confidence 7999999999999999999874
No 36
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.38 E-value=2.5e-12 Score=121.83 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=58.9
Q ss_pred ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC---CceEEEEeeCCCHHHHHhhcC
Q 038595 455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP---VTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~---v~qlyvSlDA~~~e~y~~I~r 523 (534)
+.+.|++ |||+|+|++.++++++++.|+.+.+.|||+.++.++++.. ++.+.+|+|+. ++.|..+.+
T Consensus 64 ~~i~~sG-GEPll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~-~~~~~~~~g 133 (191)
T TIGR02495 64 DGVVITG-GEPTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAP-PEKYPELYG 133 (191)
T ss_pred CeEEEEC-CcccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCC-hHHHHHHHC
Confidence 4577787 9999999999999999999999999999999988888764 68899999995 777888865
No 37
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.37 E-value=2e-12 Score=133.47 Aligned_cols=74 Identities=26% Similarity=0.394 Sum_probs=58.2
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH-HHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFP-DKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWER 532 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp-e~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~ 532 (534)
.+.|++ |||||||+|.++|++++++|+.+.|.|||++. +.+.++.+ ...+.||||+.. +.|.++.+. +..|++
T Consensus 75 ~V~i~G-GEPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll~~~~~~l~~~~~~~i~VSLDG~~-e~hd~~~~~--~g~f~~ 150 (318)
T TIGR03470 75 VVSIPG-GEPLLHPEIDEIVRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLR-EHHDASVCR--EGVFDR 150 (318)
T ss_pred EEEEeC-ccccccccHHHHHHHHHHcCCeEEEecCceehHHHHHHHHhCCCcEEEEEEecCc-hhhchhhcC--CCcHHH
Confidence 366676 99999999999999999999999999999984 45666764 578999999975 677776432 234554
Q ss_pred c
Q 038595 533 F 533 (534)
Q Consensus 533 ~ 533 (534)
+
T Consensus 151 ~ 151 (318)
T TIGR03470 151 A 151 (318)
T ss_pred H
Confidence 3
No 38
>PRK06242 flavodoxin; Provisional
Probab=99.36 E-value=3.8e-12 Score=115.96 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=86.4
Q ss_pred cEEEEEECc-cchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCc
Q 038595 69 KGKLFFISQ-TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESAND 147 (534)
Q Consensus 69 kVlI~YgSq-TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~D 147 (534)
+++|+|.|. ||||+++|+.|++.|. ++++++.+.+..++.+++.+||++|||. |.+|+.+..|++.+.
T Consensus 2 k~~IiY~S~~tGnT~~~A~~ia~~l~-----~~~~~i~~~~~~~~~~~d~ii~g~pvy~-~~~~~~~~~fl~~~~----- 70 (150)
T PRK06242 2 KALIVYASVHHGNTEKIAKAIAEVLD-----AEVIDPGDVNPEDLSEYDLIGFGSGIYF-GKFHKSLLKLIEKLP----- 70 (150)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHhcC-----cEEecHHHCCcccHhHCCEEEEeCchhc-CCcCHHHHHHHHhhh-----
Confidence 489999999 8999999999999883 5678888777777888999999999998 666767888877653
Q ss_pred ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP 195 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p 195 (534)
.++++++++||.+....+ ...+.+.+.|..+|++.+..
T Consensus 71 ------~~~~k~~~~f~t~g~~~~----~~~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 71 ------PVSGKKAFIFSTSGLPFL----KYHKALKKKLKEKGFEIVGE 108 (150)
T ss_pred ------hhcCCeEEEEECCCCCcc----hHHHHHHHHHHHCCCEEEEE
Confidence 247899999998655443 23789999999999988765
No 39
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.35 E-value=3.1e-12 Score=124.82 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=59.6
Q ss_pred ceEEEeecCCCCCCcc-HHHHHHHHHhcCCcEEEEcCCCC---HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595 455 RHCALSLVGEPIMYPE-INTLVDELHRRRISTFLVTNAQF---PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~-L~elI~~lk~~gi~~~LvTNGtl---pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP 524 (534)
+.+.|++ |||||+|+ +.++++++++.|+.+.++|||++ ++.++++++ ++.+.||+|+.+++.|+++++.
T Consensus 67 ~~I~~~G-GEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~ 140 (235)
T TIGR02493 67 GGVTFSG-GEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGV 140 (235)
T ss_pred CeEEEeC-cccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCC
Confidence 3567787 99999998 56999999999999999999964 566776665 7889999999999999999875
No 40
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=99.35 E-value=3.3e-12 Score=131.28 Aligned_cols=119 Identities=20% Similarity=0.308 Sum_probs=87.2
Q ss_pred eeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccc
Q 038595 348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAI 427 (534)
Q Consensus 348 ~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 427 (534)
+.+.+.++..||.+|.||........ ......-++++|...+-. +..+ |
T Consensus 17 ~~l~i~vT~~Cnl~C~yC~~~~~~~~--~~~~~~ls~eei~~~i~~-----~~~~-g----------------------- 65 (331)
T PRK00164 17 TYLRISVTDRCNFRCTYCMPEGYLPF--LPKEELLSLEEIERLVRA-----FVAL-G----------------------- 65 (331)
T ss_pred CeEEEEEcCCcCcCCCCCCCccCCCC--CCccccCCHHHHHHHHHH-----HHHC-C-----------------------
Confidence 35667778899999999987642111 112234566676654321 1111 2
Q ss_pred ccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-C-CcEEEEcCCCC-HHHHhhcCC--
Q 038595 428 DKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-R-ISTFLVTNAQF-PDKIKLLKP-- 502 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-g-i~~~LvTNGtl-pe~l~~L~~-- 502 (534)
++.+.|++ |||+++|++.++|+.+++. + ..+.|.|||++ ++.++.|..
T Consensus 66 --------------------------i~~I~~tG-GEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~ag 118 (331)
T PRK00164 66 --------------------------VRKVRLTG-GEPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAG 118 (331)
T ss_pred --------------------------CCEEEEEC-CCCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcC
Confidence 35678887 9999999999999999987 3 47999999997 456666654
Q ss_pred CceEEEEeeCCCHHHHHhhcCC
Q 038595 503 VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 503 v~qlyvSlDA~~~e~y~~I~rP 524 (534)
++.+.||||+.+++.|++|++.
T Consensus 119 l~~i~ISlds~~~e~~~~i~~~ 140 (331)
T PRK00164 119 LDRVNVSLDSLDPERFKAITGR 140 (331)
T ss_pred CCEEEEEeccCCHHHhccCCCC
Confidence 7899999999999999999985
No 41
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.31 E-value=9.9e-12 Score=134.00 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=89.9
Q ss_pred eeeecccccccccccccccCCCC----CCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccc
Q 038595 349 CMEATPSLACANKCVFCWRHHTN----PVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVS 424 (534)
Q Consensus 349 c~~~~p~~~C~~~C~~C~r~~~~----~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~ 424 (534)
.|-..++..||.+|.||++.... ..+. ....-.|+++++.+.+. ...+ |+
T Consensus 25 r~~~~vt~~CNl~C~yC~~~~~~~~esrpg~--~~~~Ltpee~~~~i~~v----~~~~---~~----------------- 78 (442)
T TIGR01290 25 RMHLAVAPACNIQCNYCNRKYDCANESRPGV--VSELLTPEQALRKARQV----AAEI---PQ----------------- 78 (442)
T ss_pred EEEEecCCCCCCcCcCCCCCCCCCcCCCCcc--ccccCCHHHHHHHHHHH----HHhc---CC-----------------
Confidence 46677788999999999986421 1110 11235788888766542 1111 22
Q ss_pred cccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCcc-HHHHHHHHHhc--CCcEEEEcCCCC-HHHHhhc
Q 038595 425 SAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPE-INTLVDELHRR--RISTFLVTNAQF-PDKIKLL 500 (534)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~-L~elI~~lk~~--gi~~~LvTNGtl-pe~l~~L 500 (534)
++.+.|++.||||++|+ +.++++.+++. |+.+.|.|||.+ |+.+++|
T Consensus 79 -----------------------------~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L 129 (442)
T TIGR01290 79 -----------------------------LSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRL 129 (442)
T ss_pred -----------------------------CCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHH
Confidence 35588999999999985 77888888876 899999999986 8999998
Q ss_pred CC--CceEEEEeeCCCHHHHHhhc
Q 038595 501 KP--VTQLYVSVDAATKDSLKAID 522 (534)
Q Consensus 501 ~~--v~qlyvSlDA~~~e~y~~I~ 522 (534)
++ ++.+.||||+.|++.|++|.
T Consensus 130 ~~~gvd~V~islka~d~e~~~~Iy 153 (442)
T TIGR01290 130 VDLGVGHVTITINAIDPAVGEKIY 153 (442)
T ss_pred HHCCCCeEEEeccCCCHHHHhhcc
Confidence 76 89999999999999999884
No 42
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.29 E-value=5.8e-12 Score=124.30 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=59.6
Q ss_pred eEEEeecCCCCCCccH-HHHHHHHHhcCCcEEEEcCCCC---HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595 456 HCALSLVGEPIMYPEI-NTLVDELHRRRISTFLVTNAQF---PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 456 h~alSl~GEPlLyp~L-~elI~~lk~~gi~~~LvTNGtl---pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP 524 (534)
.++||+ |||||++++ .++++.+|+.|+.+.+.|||++ ++.++++++ ++.+.||+|+.+++.|+++.+.
T Consensus 73 ~V~~sG-GEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~ 145 (246)
T PRK11145 73 GVTASG-GEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGV 145 (246)
T ss_pred eEEEeC-ccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCC
Confidence 467776 999999984 6999999999999999999996 477887776 7889999999999999999763
No 43
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=99.29 E-value=1.6e-11 Score=126.64 Aligned_cols=70 Identities=29% Similarity=0.390 Sum_probs=60.6
Q ss_pred CceEEEeecCCCCCCccHHHHHHHHHh-cCC-cEEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595 454 PRHCALSLVGEPIMYPEINTLVDELHR-RRI-STFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~L~elI~~lk~-~gi-~~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP 524 (534)
++++.|++ |||||+|++.++|+.+++ .|+ .+.+.|||++ ++.++.|.. ++.+.||+|+.+++.|++|.++
T Consensus 60 v~~V~ltG-GEPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~ 134 (334)
T TIGR02666 60 VRKVRLTG-GEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRR 134 (334)
T ss_pred CCEEEEEC-ccccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCC
Confidence 35677776 999999999999999998 488 7999999997 566777764 8999999999999999999863
No 44
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.24 E-value=2.5e-11 Score=120.74 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=50.5
Q ss_pred CceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCCH
Q 038595 454 PRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATK 515 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~~ 515 (534)
++++.|++ |||||||+|.+|++.+++.|+.+.|.|||+++.. .|..++++.||+++++.
T Consensus 73 ~~~V~lTG-GEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~--~l~~~d~v~vs~K~~~s 131 (238)
T TIGR03365 73 PLHVSLSG-GNPALQKPLGELIDLGKAKGYRFALETQGSVWQD--WFRDLDDLTLSPKPPSS 131 (238)
T ss_pred CCeEEEeC-CchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHH--HHhhCCEEEEeCCCCCC
Confidence 45678888 9999999999999999999999999999999764 23346789999998874
No 45
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.23 E-value=2.4e-11 Score=108.12 Aligned_cols=120 Identities=26% Similarity=0.457 Sum_probs=87.2
Q ss_pred cccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCC
Q 038595 353 TPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIP 432 (534)
Q Consensus 353 ~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (534)
.++..|+++|.||+.+.. ...+.+....|++|++.+.+.+ ...|.
T Consensus 2 ~~~~~C~~~C~fC~~~~~---~~~~~~~~~~~e~i~~~~~~~~-----~~~~~--------------------------- 46 (166)
T PF04055_consen 2 ETTRGCNLNCSFCYYPRS---RRKNKPREMSPEEILEEIKELK-----QDKGV--------------------------- 46 (166)
T ss_dssp EEESEESS--TTTSTTTT---CCTCGCEECHHHHHHHHHHHHH-----HHTTH---------------------------
T ss_pred EECcCcCccCCCCCCCcc---CCCcccccCCHHHHHHHHHHHh-----HhcCC---------------------------
Confidence 577889999999999875 2344556677888888776531 11121
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--Cce
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQ 505 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~q 505 (534)
..+ +...|||+++|++.+++..+++. ++.+.+.|||++ ++.++.|.+ ++.
T Consensus 47 ----------------------~~i-~~~~gep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~~~ 103 (166)
T PF04055_consen 47 ----------------------KEI-FFGGGEPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGVDR 103 (166)
T ss_dssp ----------------------EEE-EEESSTGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTCSE
T ss_pred ----------------------cEE-EEeecCCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCccE
Confidence 112 23479999999999999999886 899999999999 577777776 699
Q ss_pred EEEEeeCCCHH-HHHhhcCCCCCchhhhc
Q 038595 506 LYVSVDAATKD-SLKAIDRPLFGDFWERF 533 (534)
Q Consensus 506 lyvSlDA~~~e-~y~~I~rP~~~~~w~~~ 533 (534)
+.+|+++.+++ ..+.+++ +..|+++
T Consensus 104 i~~~l~s~~~~~~~~~~~~---~~~~~~~ 129 (166)
T PF04055_consen 104 IRISLESLDEESVLRIINR---GKSFERV 129 (166)
T ss_dssp EEEEEBSSSHHHHHHHHSS---TSHHHHH
T ss_pred EecccccCCHHHhhhhhcC---CCCHHHH
Confidence 99999999999 5555543 4456654
No 46
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.22 E-value=1.1e-10 Score=112.84 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=93.0
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhC-CCceEEECCCCCCc--------------------cCcCCCCeEEEEeccCCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSN-DLLFDLVDPQTYEP--------------------EDLSKEALVLIVASSWED 127 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~-Gl~v~V~dL~d~d~--------------------~dL~~~~lvIfv~STYg~ 127 (534)
+|+|+|.|++|||+++|+.+++.+++. |.+++++++.+..+ +++.+++.+||++|||.
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~- 80 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRF- 80 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccc-
Confidence 589999999999999999999999875 99999999876432 44567899999999998
Q ss_pred CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
|.+|..+..|++++..... ...|.|+.+++|+.+....+ ....+...+-..|..+|...+-
T Consensus 81 g~~~~~lk~fld~~~~~~~-----~~~l~gK~~~~f~s~g~~~G-g~~~~l~~l~~~l~~~Gm~vv~ 141 (197)
T TIGR01755 81 GNMASQMRNFLDQTGGLWA-----SGALVGKVGSVFTSTGTQHG-GQESTILSTWTTLLHHGMIIVP 141 (197)
T ss_pred cCccHHHHHHHHhcccccc-----ccccCCCEEEEEEECCCCCC-CHHHHHHHHHHHHHHCCCEEeC
Confidence 7677779999998865421 23688999999998654433 3445566677777888986654
No 47
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.19 E-value=1.2e-10 Score=121.77 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=88.6
Q ss_pred eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595 349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID 428 (534)
Q Consensus 349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
.+-+++...||.+|+||..+... +. .--.+.||++.++...+ .. +.
T Consensus 98 t~cvSsq~GC~l~C~fC~tg~~g-----~~-r~l~~~EI~~qi~~~~~----~~---~~--------------------- 143 (336)
T PRK14470 98 VVCLSSQAGCALGCAFCATGKLG-----LD-RSLRSWEIVAQLLAVRA----DS---ER--------------------- 143 (336)
T ss_pred EEEEeCCCCcCCCCccccCCCCC-----CC-CCCCHHHHHHHHHHHHH----hc---CC---------------------
Confidence 34456677799999999986422 11 11367799988774321 11 12
Q ss_pred cCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhc------CCcEEEEcCCCCHHHHhhcC
Q 038595 429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRR------RISTFLVTNAQFPDKIKLLK 501 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~------gi~~~LvTNGtlpe~l~~L~ 501 (534)
.++++.|+++|||||+ +.+.++++.++.. +..+.+.|||..|.+.+.+.
T Consensus 144 ------------------------~i~nIvfmGmGEPllN~d~v~~~i~~l~~~~~~~~~~~~ItVsTnG~~p~i~~l~~ 199 (336)
T PRK14470 144 ------------------------PITGVVFMGQGEPFLNYDEVLRAAYALCDPAGARIDGRRISISTAGVVPMIRRYTA 199 (336)
T ss_pred ------------------------CCCEEEEEecCccccCHHHHHHHHHHHhCccccccCCCceEEEecCChHHHHHHHh
Confidence 2578889999999996 6799999999863 56799999999997665444
Q ss_pred C--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 502 P--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 502 ~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
. ...|.|||+|+|++.|++|.+|.
T Consensus 200 ~~~~~~LaiSLhA~~~e~r~~I~p~~ 225 (336)
T PRK14470 200 EGHKFRLCISLNAAIPWKRRALMPIE 225 (336)
T ss_pred cCCCceEEEecCCCCHHHHHHhcCcc
Confidence 2 36799999999999999999763
No 48
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.19 E-value=6.9e-11 Score=112.68 Aligned_cols=86 Identities=26% Similarity=0.267 Sum_probs=75.9
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
+++|+|+|.||||+++|+.|++.|.. |+.++++++++.+..++.+++.+||++|||. |.++..+..|++.+.
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~~~~l~~yD~vIlGspi~~-G~~~~~~~~fl~~~~------ 73 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIEEPDLSDYDRVVIGASIRY-GHFHSALYKFVKKHA------ 73 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcCccCHHHCCEEEEECcccc-CCcCHHHHHHHHHHH------
Confidence 48999999999999999999999998 9999999999987778888999999999997 667777888876543
Q ss_pred cccccCCCCCeEEEEEec
Q 038595 149 RVGSLLLSNCKFAVFGVG 166 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLG 166 (534)
..|+++++++|++|
T Consensus 74 ----~~l~~K~v~~F~v~ 87 (177)
T PRK11104 74 ----TQLNQMPSAFFSVN 87 (177)
T ss_pred ----HHhCCCeEEEEEec
Confidence 25799999999988
No 49
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=99.16 E-value=1.1e-10 Score=106.16 Aligned_cols=102 Identities=18% Similarity=0.369 Sum_probs=67.1
Q ss_pred EEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCC----CchHHHHHHHHHHhhcCc
Q 038595 72 LFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGK----PPEAAKFFMNWIDESAND 147 (534)
Q Consensus 72 I~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~----pPdna~~Fle~L~e~~~D 147 (534)
|+|.|.||||++|+++|...+. ..-+.+...+. ++.-..-+|+++|||+.|. .|+....|++.-+.
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~-----~~~i~~~~~~~-~~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~~~~N---- 70 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAP-----AIRIPIREISP-DLEVDEPFVLITPTYGFGENDGGVPKQVIRFLENPDN---- 70 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--S-----EEEE-SSCTTS-TS--SS-EEEEEE-BTTTBSSTSS-HHHHHHHHSHHH----
T ss_pred CEEECCCcCHHHHHHHHcccch-----hcccccccccc-cccCCCCEEEEecccCCCCCCCCCCHHHHHHHHHHHH----
Confidence 7999999999999999987543 22333333332 2334567999999999999 89888888775443
Q ss_pred ccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
+..-.+|+|+||++|++.||.+|+.+.+. .+...++
T Consensus 71 --------~~~l~GVigSGNrNfg~~f~~aa~~ia~k---y~VPll~ 106 (122)
T PF07972_consen 71 --------RKLLRGVIGSGNRNFGDNFCLAADKIAEK---YGVPLLY 106 (122)
T ss_dssp --------GGGEEEEEEEE-GGGGGGTTHHHHHHHHH---HT--EEE
T ss_pred --------HhhheeEEecCCcHHHHHHHHHHHHHHHH---cCCCEEE
Confidence 23467799999999999999999999877 5554443
No 50
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.14 E-value=3.8e-10 Score=108.91 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=91.4
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhh-CCCceEEECCCCCC--------------------ccCcCCCCeEEEEeccCCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTS-NDLLFDLVDPQTYE--------------------PEDLSKEALVLIVASSWED 127 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~-~Gl~v~V~dL~d~d--------------------~~dL~~~~lvIfv~STYg~ 127 (534)
+|+|+|+|.+|||+++|+.+++.+.+ .|.+++++++.+.. .+++...+.+||++|||.
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~- 81 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRF- 81 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccC-
Confidence 59999999999999999999999998 99999999986432 345567899999999996
Q ss_pred CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
|.+|..++.|++++..... ...|+++.+++|+......+ .--...+.+-..|..+|...+-
T Consensus 82 g~~~~~lk~fld~~~~~~~-----~~~l~gK~~~~f~s~g~~~G-g~~~~l~~l~~~~~~~gm~vv~ 142 (200)
T PRK03767 82 GNMAGQMRNFLDQTGGLWA-----KGALVGKVGSVFTSTGTQHG-GQETTITSTHTTLLHHGMVIVG 142 (200)
T ss_pred CCchHHHHHHHHHhccccc-----cCCccCCEEEEEEeCCCCCC-ChHHHHHHHHHHHHHcCCEEeC
Confidence 7788889999998754321 23688999999998544322 1224455566666788886654
No 51
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.13 E-value=2e-10 Score=119.66 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=55.4
Q ss_pred eEEEeecCCCCCCc--cHHHHHHHHHhcC---C--cEEEEcCCCC--HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCC
Q 038595 456 HCALSLVGEPIMYP--EINTLVDELHRRR---I--STFLVTNAQF--PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 456 h~alSl~GEPlLyp--~L~elI~~lk~~g---i--~~~LvTNGtl--pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
++.+++ |||||+| .+.++++++++.| + .+.|+|||++ ++.++.|.+ ...+.||||++ ++.|.++++-.
T Consensus 60 ~i~~~G-GEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~~~v~iSlDg~-~~~hd~~R~~~ 137 (370)
T PRK13758 60 SFAFQG-GEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFLVGLSMDGP-KEIHNLNRKDC 137 (370)
T ss_pred EEEEEC-CccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcCceEEEeecCC-HHHhccccCCC
Confidence 455554 9999996 4679999999875 3 3579999997 677777764 24899999998 67787776421
Q ss_pred -CCchhhhc
Q 038595 526 -FGDFWERF 533 (534)
Q Consensus 526 -~~~~w~~~ 533 (534)
.++.|+++
T Consensus 138 ~g~~~f~~v 146 (370)
T PRK13758 138 CGLDTFSKV 146 (370)
T ss_pred CCCccHHHH
Confidence 24566664
No 52
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.11 E-value=5e-11 Score=106.73 Aligned_cols=80 Identities=19% Similarity=0.270 Sum_probs=51.0
Q ss_pred CceEEEeecCCCCC---CccHHHHHHHHHhcCC-cEEEEcCCCCHHHHhh--cCC-CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 454 PRHCALSLVGEPIM---YPEINTLVDELHRRRI-STFLVTNAQFPDKIKL--LKP-VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 454 ~~h~alSl~GEPlL---yp~L~elI~~lk~~gi-~~~LvTNGtlpe~l~~--L~~-v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
+..+.|++ |||+| ++.|.++++.+++.+. .+.+.|||+..+.+.. +.. ++.+.||||.+..+.+.++.+...
T Consensus 53 ~~~i~l~G-GEPll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~~~~~~~~~~~~~~~~~vsvd~~~~~~~~~~~~~~~ 131 (139)
T PF13353_consen 53 IKGIVLTG-GEPLLHENYDELLEILKYIKEKFPKKIIILTNGYTLDELLDELIEELLDEIDVSVDGPFDENKEDRHLRGR 131 (139)
T ss_dssp CCEEEEEC-STGGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--HHHHHHHHHHHHHHTESEEEE---SSHHHHH--HHC
T ss_pred ceEEEEcC-CCeeeeccHhHHHHHHHHHHHhCCCCeEEEECCCchhHHHhHHHHhccCccEEEEEEechhhccccccCcc
Confidence 34566676 99999 7899999999999988 7999999998544321 222 456778999999988888777667
Q ss_pred CchhhhcC
Q 038595 527 GDFWERFL 534 (534)
Q Consensus 527 ~~~w~~~~ 534 (534)
+.++++++
T Consensus 132 gs~~q~i~ 139 (139)
T PF13353_consen 132 GSSNQRII 139 (139)
T ss_dssp SS------
T ss_pred CcccccCC
Confidence 77888764
No 53
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=99.08 E-value=2e-10 Score=119.29 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=59.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCc-EEEEcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595 463 GEPIMYPEINTLVDELHRRRIS-TFLVTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWERF 533 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~-~~LvTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~ 533 (534)
|||||-++|.++|+.+++.++. +.+.|||.+ +...+.|.. +++|.||||+.|++.|++|.+ .+.++++
T Consensus 68 GEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~---~~~~~~V 139 (322)
T COG2896 68 GEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITG---RDRLDRV 139 (322)
T ss_pred CCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCHHHHHHHhC---CCcHHHH
Confidence 9999999999999999998764 999999986 677778875 999999999999999999997 3446665
No 54
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.06 E-value=9e-11 Score=102.95 Aligned_cols=39 Identities=28% Similarity=0.560 Sum_probs=29.7
Q ss_pred ceEEEeecCCCCCC---ccHHHHHHHHHhcC--CcEEEEcCCCCH
Q 038595 455 RHCALSLVGEPIMY---PEINTLVDELHRRR--ISTFLVTNAQFP 494 (534)
Q Consensus 455 ~h~alSl~GEPlLy---p~L~elI~~lk~~g--i~~~LvTNGtlp 494 (534)
.++.|+| |||+|| +.|.++++.+++++ +.+.+.|||+++
T Consensus 49 ~~v~~~G-GEPll~~~~~~l~~~i~~~~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 49 STVVFTG-GEPLLYLNPEDLIELIEYLKERGPEIKIRIETNGTLP 92 (119)
T ss_dssp -EEEEES-SSGGGSTTHHHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred EEEEEEC-CCCccccCHHHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence 4566777 999987 57889999999998 999999999996
No 55
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=99.06 E-value=1.3e-09 Score=100.42 Aligned_cols=129 Identities=12% Similarity=0.188 Sum_probs=88.7
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCC----CCchHHHHHHHHHHhh
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDG----KPPEAAKFFMNWIDES 144 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G----~pPdna~~Fle~L~e~ 144 (534)
.+.|+|.|.||||.+|+++|. +.+.. +.+.. .- +.+.-.+-+|+++|||+.| ..|.....|+ .+.
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~~~~--I~~~~--~~--~~~~v~epyvlitpTyg~G~~~~~Vp~~vi~FL---n~~ 70 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LPAVR--IPLNR--EE--DPIEVDEPYVLITPTYGGGGTVGAVPKQVIRFL---NNE 70 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CCcee--ccccc--cc--CCccCCCCeEEEeccccCCCccCccCHHHHHHh---ccc
Confidence 378999999999999999998 22111 11111 11 1244567899999999999 8888666664 322
Q ss_pred cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHH
Q 038595 145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILK 222 (534)
Q Consensus 145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~ 222 (534)
.-+.+.-+|+|.||++|++.||.+|+.+.+. ++..-++..-+.-... |. +.+..|..++++...
T Consensus 71 ---------~Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k---~~vPlLy~FEL~GT~~-Dv-~~v~~~v~~~~~~~~ 134 (141)
T COG1780 71 ---------HNRALCRGVIASGNRNFGDNFALAGDVISAK---CGVPLLYRFELLGTAE-DV-AAVRKGVTEFWKRAP 134 (141)
T ss_pred ---------cchhheEEEEecCCccHHHHHHHHHHHHHHH---hCCCEEEEEeccCCHH-HH-HHHHHHHHHHHHhCC
Confidence 2245677899999999999999999999876 6766666543332221 22 456777777776543
No 56
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.05 E-value=7.7e-10 Score=115.63 Aligned_cols=68 Identities=22% Similarity=0.229 Sum_probs=57.2
Q ss_pred CceEEEeecCCCCCCc-cHHHHHHHHHh-----cCC-cEEEEcCCCCHHHHhhcCC--Cc-eEEEEeeCCCHHHHHhhc
Q 038595 454 PRHCALSLVGEPIMYP-EINTLVDELHR-----RRI-STFLVTNAQFPDKIKLLKP--VT-QLYVSVDAATKDSLKAID 522 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-----~gi-~~~LvTNGtlpe~l~~L~~--v~-qlyvSlDA~~~e~y~~I~ 522 (534)
++++.|++.|||+|++ .+.++|+++++ .|. .+.+.|||. ++.+++|.. ++ .|.|||||++++.++++.
T Consensus 149 v~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~-~~~i~~L~~~~l~~~LaiSL~a~~~e~r~~i~ 226 (343)
T PRK14469 149 VGNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGI-PEKIIQLAEEGLDVKLALSLHAPTNFKRDQIV 226 (343)
T ss_pred cCeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCC-hHHHHHHHhhCCCcEEEEEeCCCCHHHHHhhc
Confidence 5678999999999987 69999999964 244 689999997 777777765 56 699999999999999985
No 57
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.03 E-value=1.7e-09 Score=114.57 Aligned_cols=119 Identities=14% Similarity=0.231 Sum_probs=101.5
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC----cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhh
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED----LSKEALVLIVASSWEDGKPPEAAKFFMNWIDES 144 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d----L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~ 144 (534)
+|.|+|.|++|+|+.+|+.|++.|.+.|+.|.++++.+.++++ +.+.+.+|+++||++.+.+|. +..++..+...
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~~~~~p~-i~~~l~~v~~~ 326 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTINGGAHPP-IQTALGYVLAL 326 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcccCCCCch-HHHHHHHHHhc
Confidence 5999999999999999999999999999999999999988766 456789999999999887775 77888887754
Q ss_pred cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCC
Q 038595 145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVD 202 (534)
Q Consensus 145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~ 202 (534)
..+++..+|||+ ..|+ ..+.+.+.+.|+.+|.+..++..++-..
T Consensus 327 ---------~~~~k~~~vfgS--~GW~---g~av~~i~~~l~~~g~~~~~~~i~vk~~ 370 (388)
T COG0426 327 ---------APKNKLAGVFGS--YGWS---GEAVDLIEEKLKDLGFEFGFDGIEVKFR 370 (388)
T ss_pred ---------cCcCceEEEEec--cCCC---CcchHHHHHHHHhcCcEEeccceEEEec
Confidence 346677999986 3565 7889999999999999998886666554
No 58
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.00 E-value=2.2e-09 Score=97.68 Aligned_cols=62 Identities=27% Similarity=0.475 Sum_probs=57.4
Q ss_pred ecCCCCCCccHHHHHHHHHhc--CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhc
Q 038595 461 LVGEPIMYPEINTLVDELHRR--RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAID 522 (534)
Q Consensus 461 l~GEPlLyp~L~elI~~lk~~--gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~ 522 (534)
..|||++++++.++++.+++. ++++.+.|||.. ++.++.|.+ +..+.+|+|+.+++.+++++
T Consensus 51 ~ggep~~~~~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~ 118 (204)
T cd01335 51 TGGEPLLYPELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIR 118 (204)
T ss_pred eCCcCCccHhHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh
Confidence 459999999999999999998 899999999997 888888876 79999999999999999997
No 59
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.00 E-value=1.5e-09 Score=116.07 Aligned_cols=69 Identities=22% Similarity=0.310 Sum_probs=62.8
Q ss_pred ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEE-cCCC-C--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595 455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLV-TNAQ-F--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~Lv-TNGt-l--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r 523 (534)
..++||+.|||++||++.++++.+|+.|+.+.+. |||+ + ++.+++|.+ ++.+++|||+.|++.++++.+
T Consensus 75 ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G 149 (404)
T TIGR03278 75 TKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMK 149 (404)
T ss_pred CEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhC
Confidence 3578999999999999999999999999999996 9987 3 788999887 899999999999999999765
No 60
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.99 E-value=2.9e-09 Score=112.69 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=58.4
Q ss_pred CCceEEEeecCCCCCCc-cHHHHHHHHHhcC----C---cEEEEcCCCCHHHHhhcCC--Cc-eEEEEeeCCCHHHHHhh
Q 038595 453 TPRHCALSLVGEPIMYP-EINTLVDELHRRR----I---STFLVTNAQFPDKIKLLKP--VT-QLYVSVDAATKDSLKAI 521 (534)
Q Consensus 453 ~~~h~alSl~GEPlLyp-~L~elI~~lk~~g----i---~~~LvTNGtlpe~l~~L~~--v~-qlyvSlDA~~~e~y~~I 521 (534)
.++++.|.+.|||++++ .+.++|+.+++.+ + .+.+.|||-.| .+++|.. ++ .|.|||||++++.|++|
T Consensus 173 ~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~Gl~~-~i~~L~~~gl~~~LaiSL~a~~~e~r~~i 251 (368)
T PRK14456 173 GITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGITP-EIDRLATSGLKTKLAVSLHSADQEKRERL 251 (368)
T ss_pred CccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCCChH-HHHHHHHcCCCceEEEEecCCCHHHHHHh
Confidence 36788999999999998 5999999999752 3 47899999555 4677764 54 79999999999999999
Q ss_pred cCC
Q 038595 522 DRP 524 (534)
Q Consensus 522 ~rP 524 (534)
..|
T Consensus 252 ~P~ 254 (368)
T PRK14456 252 MPQ 254 (368)
T ss_pred ccc
Confidence 754
No 61
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.97 E-value=5.5e-09 Score=110.00 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=59.8
Q ss_pred CceEEEeecCCCCCCc-cHHHHHHHHHhc-CC-----cEEEEcCCCCHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595 454 PRHCALSLVGEPIMYP-EINTLVDELHRR-RI-----STFLVTNAQFPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp-~L~elI~~lk~~-gi-----~~~LvTNGtlpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP 524 (534)
++++.++++||||+++ .+.++++.+++. |+ .+.|.|||. ++.++.|.. +..|.|||||+|++.|++|.++
T Consensus 156 i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~-~~~i~~L~~~~l~~L~iSLha~~~e~r~~i~p~ 234 (354)
T PRK14460 156 LRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGI-EKGLRELGESGLAFLAVSLHAPNQELRERIMPK 234 (354)
T ss_pred eeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCC-hHHHHHHHhCCCcEEEEeCCCCCHHHHHHhcCc
Confidence 6889999999999987 588999999864 66 499999998 667777765 5589999999999999999865
No 62
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.97 E-value=2.4e-09 Score=112.33 Aligned_cols=72 Identities=21% Similarity=0.279 Sum_probs=56.1
Q ss_pred CCceEEEeecCCCCCCc-cHHHHHHHH-HhcCC-----cEEEEcCCCCHHHHhhcCC--Cc-eEEEEeeCCCHHHHHhhc
Q 038595 453 TPRHCALSLVGEPIMYP-EINTLVDEL-HRRRI-----STFLVTNAQFPDKIKLLKP--VT-QLYVSVDAATKDSLKAID 522 (534)
Q Consensus 453 ~~~h~alSl~GEPlLyp-~L~elI~~l-k~~gi-----~~~LvTNGtlpe~l~~L~~--v~-qlyvSlDA~~~e~y~~I~ 522 (534)
.++++.|++.|||++++ .+.++++.+ +..|+ .+.+.|||. +..+++|.+ +. .|.|||||+|++.|++|.
T Consensus 143 ~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~-~~~i~~L~~~~l~~~LaiSL~a~d~e~r~~i~ 221 (343)
T PRK14468 143 EIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGI-PKGIRRLAEEDLGVRLALSLHAPDEETRQRII 221 (343)
T ss_pred CccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCC-hHHHHHHHHhCcCcEEEEEcCCCCHHHHHHhc
Confidence 36789999999999976 777888777 44454 488999995 455555654 23 599999999999999998
Q ss_pred CCC
Q 038595 523 RPL 525 (534)
Q Consensus 523 rP~ 525 (534)
++-
T Consensus 222 p~~ 224 (343)
T PRK14468 222 PTA 224 (343)
T ss_pred ccc
Confidence 653
No 63
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=98.96 E-value=2.2e-09 Score=114.41 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=53.1
Q ss_pred eEEEee-cCCCCCCcc--HHHHHHHHH----hcCCcEEEEcCCCC--HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCC
Q 038595 456 HCALSL-VGEPIMYPE--INTLVDELH----RRRISTFLVTNAQF--PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 456 h~alSl-~GEPlLyp~--L~elI~~lk----~~gi~~~LvTNGtl--pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
.+.|.+ .|||||+|. +.+++++++ ..++.+.|.|||++ ++.++.|.. -..|.||||++ ++.|++.++-.
T Consensus 68 ~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~~~~~v~ISlDG~-~~~hD~~R~~~ 146 (412)
T PRK13745 68 QVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLTDEWCEFFRENNFLVGVSIDGP-QEFHDEYRKNK 146 (412)
T ss_pred eEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCCHHHHHHHHHcCeEEEEEecCC-HHHhhhhcCCC
Confidence 345554 399999985 556666554 34778889999997 566666664 23899999998 57777776421
Q ss_pred -CCchhhhc
Q 038595 526 -FGDFWERF 533 (534)
Q Consensus 526 -~~~~w~~~ 533 (534)
....|+++
T Consensus 147 ~g~gsf~~v 155 (412)
T PRK13745 147 MGKPSFVKV 155 (412)
T ss_pred CCCccHHHH
Confidence 23567765
No 64
>PRK07116 flavodoxin; Provisional
Probab=98.96 E-value=5.2e-09 Score=97.74 Aligned_cols=125 Identities=17% Similarity=0.231 Sum_probs=83.3
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-----------------------------ccCcCCCCeEE
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-----------------------------PEDLSKEALVL 119 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-----------------------------~~dL~~~~lvI 119 (534)
+++|+|.|.||||+++|+.|++.+....+.+ .....++ ..++..++.+|
T Consensus 4 k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~~i--~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~D~Ii 81 (160)
T PRK07116 4 KTLVAYFSATGTTKKVAEKLAEVTGADLFEI--KPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEYDVIF 81 (160)
T ss_pred cEEEEEECCCCcHHHHHHHHHHHhcCCeEEE--eeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhCCEEE
Confidence 4899999999999999999999996543222 2111110 12456689999
Q ss_pred EEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEE
Q 038595 120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVE 198 (534)
Q Consensus 120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~ 198 (534)
|++|+|. |.+|..+..|++.+ .++++++++|+. |.+.+ +.+...+.+. ++...+.+...
T Consensus 82 ig~Pv~~-~~~p~~v~~fl~~~------------~l~~k~v~~f~T~g~~~~----g~~~~~~~~~---~~~~~~~~~~~ 141 (160)
T PRK07116 82 LGFPIWW-YVAPRIINTFLESY------------DFSGKTVIPFATSGGSGI----GNAEKELKKS---YPDANWKEGRL 141 (160)
T ss_pred EECChhc-cccHHHHHHHHHhc------------CCCCCEEEEEEeCCCCCc----CcHHHHHHHH---CCcCccccCee
Confidence 9999998 77777777776532 467899999988 65554 3445555555 34444444444
Q ss_pred eeCCCCCcHHHHHHHHHHH
Q 038595 199 GDVDGGELDVVFEDWSKRV 217 (534)
Q Consensus 199 gD~~~g~~e~~f~eW~~~L 217 (534)
++.+. .+..+++|..++
T Consensus 142 ~~~~~--~~~~i~~wl~~~ 158 (160)
T PRK07116 142 LNGGA--SKEEIKEWINKL 158 (160)
T ss_pred ecCCC--cHHHHHHHHHHc
Confidence 44322 256799998764
No 65
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.90 E-value=8.7e-09 Score=97.53 Aligned_cols=97 Identities=22% Similarity=0.314 Sum_probs=75.4
Q ss_pred EEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc
Q 038595 71 KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV 150 (534)
Q Consensus 71 lI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv 150 (534)
+|+|.|.||||+++|+.|++.|.. ..++++.+.... +.++++++++..+|. |.+++.+..|+..
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~----~~~~~~~~~~~~-~~~yD~i~lG~w~d~-G~~d~~~~~fl~~---------- 64 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA----KDIVSVEEPPED-LEDYDLIFLGFWIDK-GTPDKDMKEFLKK---------- 64 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC----ceeEeccccccC-CCCCCEEEEEcCccC-CCCCHHHHHHHHH----------
Confidence 489999999999999999999874 467788877544 778999999999999 7888888888654
Q ss_pred cccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHH
Q 038595 151 GSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRE 187 (534)
Q Consensus 151 ~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~k 187 (534)
|+|+++++||. |-....+++....+.+...+.+
T Consensus 65 ----l~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 65 ----LKGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred ----ccCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 46788999984 3222234667777777777655
No 66
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.88 E-value=9.2e-09 Score=108.16 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=54.3
Q ss_pred CceEEEeecCCCCCCc-cHHHHHHHHHh-cCC-----cEEEEcCCCCHHHHhhcCC-C-ceEEEEeeCCCHHHHHhhcCC
Q 038595 454 PRHCALSLVGEPIMYP-EINTLVDELHR-RRI-----STFLVTNAQFPDKIKLLKP-V-TQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l~~L~~-v-~qlyvSlDA~~~e~y~~I~rP 524 (534)
++++.|.+.||||++. .+.++++.+++ .|+ .+.+.|||..|... +|.. + -.|.||+||+|++.+++|.++
T Consensus 149 i~~IvfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~-~l~~~~~~~LaiSL~a~~~e~r~~I~pi 227 (349)
T PRK14463 149 VRNIVFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEME-ELGREVTVNLAVSLNATTDEVRDRIMPV 227 (349)
T ss_pred ccEEEEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHH-HHhhccCeEEEEeCCCCCHHHHHHhcCc
Confidence 4667889999999975 78888888875 576 68899999877554 4544 2 236699999999999999643
No 67
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.88 E-value=8.4e-09 Score=108.68 Aligned_cols=113 Identities=15% Similarity=0.245 Sum_probs=81.4
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (534)
..-|+.+|.||..+... ....-.++||++.++... ..+.. .| +
T Consensus 116 qvGC~~~C~FC~t~~~~------~~r~lt~~EIv~qv~~~~-~~~~~-~g--~--------------------------- 158 (356)
T PRK14455 116 QVGCRIGCTFCASTLGG------LKRDLEAGEIVAQVMLVQ-KYLDE-TE--E--------------------------- 158 (356)
T ss_pred CCCCCCCCCcCCCCCCC------CCccCCHHHHHHHHHHHH-HHHhh-cC--C---------------------------
Confidence 34599999999776322 223468889999876432 11111 11 1
Q ss_pred CCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHh-cCC-----cEEEEcCCCCHHHHhhcCC--Cce
Q 038595 435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHR-RRI-----STFLVTNAQFPDKIKLLKP--VTQ 505 (534)
Q Consensus 435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l~~L~~--v~q 505 (534)
.++++.++++|||+++ +.+.++++.+++ .|+ .+.|.|||..|...+-+.. -..
T Consensus 159 ------------------~v~~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~~~i~~l~d~~l~~~ 220 (356)
T PRK14455 159 ------------------RVSHIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIAPKIYDFADEGLQIN 220 (356)
T ss_pred ------------------CcceEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCchHhHHHHHhcccCee
Confidence 2467888999999995 789999999997 487 7999999998854332211 134
Q ss_pred EEEEeeCCCHHHHHhhc
Q 038595 506 LYVSVDAATKDSLKAID 522 (534)
Q Consensus 506 lyvSlDA~~~e~y~~I~ 522 (534)
|.+||+++|++.++++.
T Consensus 221 LaiSL~a~~~e~r~~l~ 237 (356)
T PRK14455 221 LAISLHAPNNELRSSLM 237 (356)
T ss_pred EEeccCCCCHHHHHHhc
Confidence 78999999999999866
No 68
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.87 E-value=5.1e-09 Score=106.04 Aligned_cols=69 Identities=26% Similarity=0.393 Sum_probs=60.9
Q ss_pred ceEEEeecCCCCCCccH-HHHHHHHHhcCCcEEEEcCCCCH-HHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595 455 RHCALSLVGEPIMYPEI-NTLVDELHRRRISTFLVTNAQFP-DKIKLLKP-VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~L-~elI~~lk~~gi~~~LvTNGtlp-e~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP 524 (534)
..++||+ |||||+|++ .++++++|+.|+.+.++|||.++ +.+++|++ ++.+.||||+.++++|+++.+.
T Consensus 127 ~~V~~sG-GEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~ 198 (295)
T TIGR02494 127 GGVTLSG-GEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGV 198 (295)
T ss_pred CcEEeeC-cchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCC
Confidence 3477888 999999985 79999999999999999999985 67777776 8889999999999999999874
No 69
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.86 E-value=1.3e-08 Score=106.85 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=56.1
Q ss_pred CceEEEeecCCCCCCc-cHHHHHHHHHh-cCC---cEEEEcCCCCHHHHhhcCCCc---------eEEEEeeCCCHHHHH
Q 038595 454 PRHCALSLVGEPIMYP-EINTLVDELHR-RRI---STFLVTNAQFPDKIKLLKPVT---------QLYVSVDAATKDSLK 519 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-~gi---~~~LvTNGtlpe~l~~L~~v~---------qlyvSlDA~~~e~y~ 519 (534)
++++.++++||||+++ .+.++++.+++ .|+ .+.+-|+|-. ..+++|.+.+ .|.|||+|+|++.++
T Consensus 149 ~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G~~-~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~ 227 (345)
T PRK14457 149 VSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVGVP-KTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRE 227 (345)
T ss_pred CCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCCch-hhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHH
Confidence 4678889999999986 58899999876 488 6888998844 4456665422 489999999999999
Q ss_pred hhcCC
Q 038595 520 AIDRP 524 (534)
Q Consensus 520 ~I~rP 524 (534)
+|.+|
T Consensus 228 ~i~p~ 232 (345)
T PRK14457 228 TLIPS 232 (345)
T ss_pred HhcCC
Confidence 99865
No 70
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=98.86 E-value=1.4e-08 Score=107.01 Aligned_cols=118 Identities=18% Similarity=0.328 Sum_probs=82.8
Q ss_pred eeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccccc
Q 038595 350 MEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDK 429 (534)
Q Consensus 350 ~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~ 429 (534)
+.+++...||.+|.||..+.. | . ...-.+.||++.++.... +.+..|
T Consensus 107 ~cVSsQ~GC~l~C~fC~t~~~---g-~--~r~lt~~Eiv~qv~~~~~-----~~~~~~---------------------- 153 (355)
T TIGR00048 107 VCVSSQVGCALGCTFCATAKG---G-F--NRNLEASEIIGQVLRVQK-----INNETG---------------------- 153 (355)
T ss_pred EEEecCCCCCCcCCCCCCCCC---C-C--CCCCCHHHHHHHHHHHHH-----HhhhcC----------------------
Confidence 335566679999999986432 1 1 122467789988764321 112111
Q ss_pred CCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHh-cC--C---cEEEEcCCCCHHHHhhcCC
Q 038595 430 QIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHR-RR--I---STFLVTNAQFPDKIKLLKP 502 (534)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~-~g--i---~~~LvTNGtlpe~l~~L~~ 502 (534)
-.+.++.|++.|||++++ .+.++++.+++ .| | .+.+.|||..|. +++|.+
T Consensus 154 ----------------------~~v~nVvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~~~-i~~l~~ 210 (355)
T TIGR00048 154 ----------------------ERVSNVVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVVPK-IDILAD 210 (355)
T ss_pred ----------------------CCeeEEEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCchHH-HHHHHH
Confidence 025678889999999985 79999999985 44 6 599999998864 344433
Q ss_pred --Cc-eEEEEeeCCCHHHHHhhcC
Q 038595 503 --VT-QLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 503 --v~-qlyvSlDA~~~e~y~~I~r 523 (534)
++ .|.|||||++++.|++|..
T Consensus 211 ~~l~~~LaiSL~a~~~e~r~~l~p 234 (355)
T TIGR00048 211 KMLQVALAISLHAPNDELRSSLMP 234 (355)
T ss_pred hCCCcEEEEEeCCCCHHHHHHhcC
Confidence 34 5889999999999999974
No 71
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=98.85 E-value=9.4e-09 Score=104.11 Aligned_cols=70 Identities=21% Similarity=0.396 Sum_probs=59.4
Q ss_pred cCCCCCCccHHHHHHHHHhc-CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595 462 VGEPIMYPEINTLVDELHRR-RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWERF 533 (534)
Q Consensus 462 ~GEPlLyp~L~elI~~lk~~-gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~ 533 (534)
.|||+|+|++.++++++++. ++.+.+.|||++ .+.++.|.. ++.+.||+|+.+++.|..+.+ ....|++.
T Consensus 73 gGEPll~~d~~ei~~~~~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSid~~~~e~hd~~rg--~~g~~~~~ 147 (347)
T COG0535 73 GGEPLLRPDLLEIVEYARKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRG--VKGVFKRA 147 (347)
T ss_pred CCCccccccHHHHHHHHhhcCCeEEEEeCCCccCCHHHHHHHHhcCCcEEEEEecCCChhhhhhhcC--CCcHHHHH
Confidence 49999999999999999977 999999999955 477777765 899999999999999888887 24456653
No 72
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=98.85 E-value=3e-08 Score=90.90 Aligned_cols=86 Identities=27% Similarity=0.409 Sum_probs=67.6
Q ss_pred EEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc
Q 038595 71 KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV 150 (534)
Q Consensus 71 lI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv 150 (534)
+|+|.|.||||+++|+.|++.|.+.+..+++.++.+ +..++..++.+||++|+|+ |.+|..+..|++.+.+
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~-~~~~~~~yD~vi~gspiy~-g~~~~~~~~fi~~~~~------- 71 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEE-DEPDLSDYDAVIFGSPIYA-GRIPGEMREFIKKNKD------- 71 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhh-cccccccCCEEEEEEEEEC-CcCCHHHHHHHHHHHH-------
Confidence 589999999999999999999997755444444321 3346788999999999999 7777778888877643
Q ss_pred cccCCCCCeEEEEEecCc
Q 038595 151 GSLLLSNCKFAVFGVGSK 168 (534)
Q Consensus 151 ~~~~Lkgl~yAVFGLGDs 168 (534)
.|+++++++|..|-.
T Consensus 72 ---~l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 72 ---NLKNKKVALFSVGGS 86 (143)
T ss_pred ---HHcCCcEEEEEEeCC
Confidence 468899999987633
No 73
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=98.84 E-value=1e-08 Score=94.83 Aligned_cols=118 Identities=19% Similarity=0.293 Sum_probs=83.5
Q ss_pred ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595 352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI 431 (534)
Q Consensus 352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (534)
+.++..||++|.||...... +. ....+|++|+..+.+.. .+ |...
T Consensus 5 i~~t~~C~~~C~yC~~~~~~--~~---~~~~~~e~i~~~~~~~~----~~--~~~~------------------------ 49 (216)
T smart00729 5 YIITRGCPRRCTFCSFPSAR--GK---LRSRYLEALVREIELLA----EK--GEKE------------------------ 49 (216)
T ss_pred EEecCchhccCCcCCcCccc--cc---hhHHHHHHHHHHHHHHH----hc--ccCC------------------------
Confidence 45677899999999997544 22 34456777777665531 11 1000
Q ss_pred CCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc--cHHHHHHHHHhcC-----CcEEEEcCCCC--HHHHhhcCC
Q 038595 432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP--EINTLVDELHRRR-----ISTFLVTNAQF--PDKIKLLKP 502 (534)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp--~L~elI~~lk~~g-----i~~~LvTNGtl--pe~l~~L~~ 502 (534)
..-..-+-+.|||++++ .+.++++.+++.+ ..+.+.|||.+ ++.++.|.+
T Consensus 50 ---------------------~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~ 108 (216)
T smart00729 50 ---------------------ILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKE 108 (216)
T ss_pred ---------------------cceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHH
Confidence 00012223359999998 6999999999873 56889999775 778888886
Q ss_pred --CceEEEEeeCCCHHHHHhhcCCC
Q 038595 503 --VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 503 --v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
++.+.+|+|+.+++.++.++++.
T Consensus 109 ~~~~~i~isl~~~~~~~~~~~~~~~ 133 (216)
T smart00729 109 AGVNRVSLGVQSGSDEVLKAINRGH 133 (216)
T ss_pred cCCCeEEEecccCCHHHHHHhcCCC
Confidence 67999999999999999988753
No 74
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.84 E-value=1.5e-08 Score=106.70 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=56.5
Q ss_pred CceEEEeecCCCCCC-ccHHHHHHHHHh-cCC-----cEEEEcCCCCHHHH----hhcCCCceEEEEeeCCCHHHHHhhc
Q 038595 454 PRHCALSLVGEPIMY-PEINTLVDELHR-RRI-----STFLVTNAQFPDKI----KLLKPVTQLYVSVDAATKDSLKAID 522 (534)
Q Consensus 454 ~~h~alSl~GEPlLy-p~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l----~~L~~v~qlyvSlDA~~~e~y~~I~ 522 (534)
+..+.++++||||++ ..+.++++.+++ .|+ .+.|.|||..|... +.+++-..|.|||+|+|+|.+++|.
T Consensus 148 v~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~LalSLha~~~e~r~~i~ 227 (348)
T PRK14467 148 IRNVVFMGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLAVSLNASSQKLRERIM 227 (348)
T ss_pred CCeEEEEccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCChhHHHHHHhhccccCeeEEEECCCCCHHHHHHhc
Confidence 356788999999996 589999999976 688 79999999887522 1222323577999999999999999
Q ss_pred CC
Q 038595 523 RP 524 (534)
Q Consensus 523 rP 524 (534)
++
T Consensus 228 p~ 229 (348)
T PRK14467 228 PI 229 (348)
T ss_pred CC
Confidence 75
No 75
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.1e-08 Score=103.57 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=59.3
Q ss_pred CCCCCC-ccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595 463 GEPIMY-PEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLFGDFWER 532 (534)
Q Consensus 463 GEPlLy-p~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~ 532 (534)
|||+++ +.+.++++.+|+.|+.+.++|||.+ |+.+++|.+ +|.+.+-|-+.+.+.|++++.--....|+.
T Consensus 92 GEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~~~vl~~ 164 (260)
T COG1180 92 GEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADNEPVLEN 164 (260)
T ss_pred CcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCcHHHHHH
Confidence 999996 5899999999999999999999998 455667777 799999999999999999986544445543
No 76
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.74 E-value=4.5e-08 Score=102.94 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=54.4
Q ss_pred CceEEEeecCCCCCC-ccHHHHHHHHHhc-CC-----cEEEEcCCCCHHHHhhcCC-CceEEEEeeCCCHHHHHhhcCC
Q 038595 454 PRHCALSLVGEPIMY-PEINTLVDELHRR-RI-----STFLVTNAQFPDKIKLLKP-VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 454 ~~h~alSl~GEPlLy-p~L~elI~~lk~~-gi-----~~~LvTNGtlpe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP 524 (534)
++++.|+++|||+++ ..+-+.++.++.. |+ .+.+-|||..|...+.+.. --.|.|||+|+|.+.+++|..+
T Consensus 149 i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~~~~LavSLha~~~e~R~~i~P~ 227 (345)
T PRK14466 149 LTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEESECHLAISLHSPFPEQRRELMPA 227 (345)
T ss_pred CCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhccCcEEEEEcCCCCHHHHHHhcCC
Confidence 578999999999984 4566666666543 65 6999999988765432222 2468999999999999999965
No 77
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=98.71 E-value=2.9e-08 Score=95.22 Aligned_cols=117 Identities=19% Similarity=0.317 Sum_probs=85.1
Q ss_pred cccccccccccccCC-CCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595 355 SLACANKCVFCWRHH-TNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~-~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (534)
+.-||..|-|||.-. +.++... |.+-.|+++++..++.-++ + |
T Consensus 48 ~VGCnl~CayCw~y~r~~~~~ra--g~f~~P~eVaeRL~ei~K~----~-g----------------------------- 91 (228)
T COG5014 48 TVGCNLLCAYCWNYFRNLRPKRA--GDFLSPEEVAERLLEISKK----R-G----------------------------- 91 (228)
T ss_pred ccccceeeHHhhhhhhcCCcccc--ccccCHHHHHHHHHHHHHh----c-C-----------------------------
Confidence 456999999999853 4455444 4668999999998764333 2 2
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhcCCcEEEEcCCCC----HHHHhhcCC--CceE
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRRRISTFLVTNAQF----PDKIKLLKP--VTQL 506 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~gi~~~LvTNGtl----pe~l~~L~~--v~ql 506 (534)
.+.+.||+ |||+|-+ |+.|+|+++-. .+-.|.|||++ +.-.++|.. =-.+
T Consensus 92 --------------------~d~vRiSG-~EP~l~~EHvlevIeLl~~--~tFvlETNG~~~g~drslv~el~nr~nv~v 148 (228)
T COG5014 92 --------------------CDLVRISG-AEPILGREHVLEVIELLVN--NTFVLETNGLMFGFDRSLVDELVNRLNVLV 148 (228)
T ss_pred --------------------CcEEEeeC-CCccccHHHHHHHHHhccC--ceEEEEeCCeEEecCHHHHHHHhcCCceEE
Confidence 23455564 9999987 89999999844 35568999997 455555553 2458
Q ss_pred EEEeeCCCHHHHHhhcCCCCCchhh
Q 038595 507 YVSVDAATKDSLKAIDRPLFGDFWE 531 (534)
Q Consensus 507 yvSlDA~~~e~y~~I~rP~~~~~w~ 531 (534)
.|||.+.|+|+|.+|.+- .++|+.
T Consensus 149 RVsvKG~dpesF~kIT~a-sp~~F~ 172 (228)
T COG5014 149 RVSVKGWDPESFEKITGA-SPEYFR 172 (228)
T ss_pred EEEecCCCHHHHHHHhcC-ChHHHH
Confidence 999999999999999963 455554
No 78
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.68 E-value=1e-07 Score=101.22 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=56.6
Q ss_pred CceEEEeecCCCCC-CccHHHHHHHHHh-----cCC---cEEEEcCCCCHHHHhhcCC--C-ceEEEEeeCCCHHHHHhh
Q 038595 454 PRHCALSLVGEPIM-YPEINTLVDELHR-----RRI---STFLVTNAQFPDKIKLLKP--V-TQLYVSVDAATKDSLKAI 521 (534)
Q Consensus 454 ~~h~alSl~GEPlL-yp~L~elI~~lk~-----~gi---~~~LvTNGtlpe~l~~L~~--v-~qlyvSlDA~~~e~y~~I 521 (534)
++++.|+++||||+ |+.+.++|+.+++ .|+ .+.+-|.|-.|. +++|.. + ..|.|||+|+|++.+++|
T Consensus 177 i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~-i~~la~~~l~~~LavSLha~d~e~R~~l 255 (373)
T PRK14459 177 LSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPA-IRKLADEGLPVTLAVSLHAPDDELRDEL 255 (373)
T ss_pred eeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhH-HHHHHHhcCCeEEEEEeCCCCHHHHHHh
Confidence 67899999999999 7889999999987 477 688999997764 223321 2 359999999999999999
Q ss_pred cC
Q 038595 522 DR 523 (534)
Q Consensus 522 ~r 523 (534)
..
T Consensus 256 ~p 257 (373)
T PRK14459 256 VP 257 (373)
T ss_pred cC
Confidence 84
No 79
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=98.63 E-value=2.5e-07 Score=97.44 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=57.6
Q ss_pred CceEEEeecCCCCCCccHHHHHHHHHhc---CCc---EEEEcCCCCH--HHHhhcCCCceEEEEeeCCCHHHHHhhcC
Q 038595 454 PRHCALSLVGEPIMYPEINTLVDELHRR---RIS---TFLVTNAQFP--DKIKLLKPVTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~L~elI~~lk~~---gi~---~~LvTNGtlp--e~l~~L~~v~qlyvSlDA~~~e~y~~I~r 523 (534)
++.+.|+++|||++++.+.++|+.+++. |++ +.|.|+|..| +.+++..+-..|.+||+++|.+..+++..
T Consensus 147 i~~IvfmGmGEPLln~~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~~~v~LalSLha~dd~~r~~l~p 224 (347)
T PRK14453 147 LDSISFMGMGEALANPELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEFPQVNLTFSLHSPFESQRSELMP 224 (347)
T ss_pred cceEEEeecCCccCCHHHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhccCcCEEEEecCCCHHHHHHhcC
Confidence 4678999999999999999999999863 555 9999999885 56666555355777999999999888873
No 80
>PRK15108 biotin synthase; Provisional
Probab=98.62 E-value=1.4e-07 Score=98.99 Aligned_cols=120 Identities=15% Similarity=0.263 Sum_probs=87.0
Q ss_pred ccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595 354 PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 354 p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (534)
.|..|+++|.||.-...++.+.. ....-+|++|++.+... +.+ |
T Consensus 49 ~Tn~C~~~C~yC~~~~~~~~~~~-~~~~ls~eEI~~~a~~~-----~~~-G----------------------------- 92 (345)
T PRK15108 49 KTGACPEDCKYCPQSSRYKTGLE-AERLMEVEQVLESARKA-----KAA-G----------------------------- 92 (345)
T ss_pred ECCCcCCCCcCCCCcccCCCCCC-cccCCCHHHHHHHHHHH-----HHc-C-----------------------------
Confidence 58899999999987643322211 12346889999987532 221 2
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecC-CCCC--CccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC--CceEE
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIM--YPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP--VTQLY 507 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlL--yp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~--v~qly 507 (534)
++++.+..+| +|.. ..++.++++.+|+.++.+. +|||.+ ++.+++|.. ++.+.
T Consensus 93 --------------------~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~-~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 93 --------------------STRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETC-MTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred --------------------CCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEE-EeCCcCCHHHHHHHHHcCCCEEe
Confidence 2345555554 6654 4789999999999898774 899987 688888875 99999
Q ss_pred EEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595 508 VSVDAATKDSLKAIDRPLFGDFWERF 533 (534)
Q Consensus 508 vSlDA~~~e~y~~I~rP~~~~~w~~~ 533 (534)
++||+ +++.|.+|+.+ .++|+|+
T Consensus 152 ~~leT-~p~~f~~I~~~--~~~~~rl 174 (345)
T PRK15108 152 HNLDT-SPEFYGNIITT--RTYQERL 174 (345)
T ss_pred ecccc-ChHhcCCCCCC--CCHHHHH
Confidence 99999 89999999865 3566653
No 81
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=98.59 E-value=1.5e-07 Score=100.04 Aligned_cols=123 Identities=16% Similarity=0.277 Sum_probs=78.4
Q ss_pred eeeccccc-ccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595 350 MEATPSLA-CANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID 428 (534)
Q Consensus 350 ~~~~p~~~-C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
+.+-|+.. ||.+|.||+-.+..+... .|. ++.++..++.+ ...++
T Consensus 9 ~~~kpt~~~CNL~C~YC~~~~~~~~~~----~Ms--~etle~~i~~~-------~~~~~--------------------- 54 (378)
T COG0641 9 VMAKPTGFECNLDCKYCFYLEKESLQR----IMS--DETLEEYVRQY-------IAASN--------------------- 54 (378)
T ss_pred hhcCcccCccCCCCCeeCcccCCCCCC----CCC--HHHHHHHHHHH-------HhhCC---------------------
Confidence 35668877 999999999987665432 233 35666665432 22222
Q ss_pred cCCCCCCCCcccccccHHHhhhccCCceEEEeec-CCCCCC-ccHHHHHHHHHhc---C--CcEEEEcCCCC--HHHHhh
Q 038595 429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLV-GEPIMY-PEINTLVDELHRR---R--ISTFLVTNAQF--PDKIKL 499 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~-GEPlLy-p~L~elI~~lk~~---g--i~~~LvTNGtl--pe~l~~ 499 (534)
.+.++|... |||||. ..+-+.+..+.++ | |.-++.|||++ ++..+-
T Consensus 55 -------------------------~~~v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~~~~i~~siqTNg~LL~~e~~e~ 109 (378)
T COG0641 55 -------------------------GDKVTFTWQGGEPLLAGLDFYRKAVALQQKYANGKTISNALQTNGTLLNDEWAEF 109 (378)
T ss_pred -------------------------CCeeEEEEECCccccchHHHHHHHHHHHHHHhcCCeeEEEEEEcccccCHHHHHH
Confidence 122555655 999998 4666666554432 4 44669999998 566665
Q ss_pred cCC--CceEEEEeeCCCHHHHHhhcCCCC-Cchhhhc
Q 038595 500 LKP--VTQLYVSVDAATKDSLKAIDRPLF-GDFWERF 533 (534)
Q Consensus 500 L~~--v~qlyvSlDA~~~e~y~~I~rP~~-~~~w~~~ 533 (534)
|.+ + .+-||||+| +|.+++-+.-.. +..|+|+
T Consensus 110 l~~~~~-~IgISiDGp-~eihD~~R~~~~GkgTfd~i 144 (378)
T COG0641 110 LAEHDF-LIGISIDGP-EEIHDKYRVTKSGKGTFDRV 144 (378)
T ss_pred HHhcCc-eEEEeccCc-hHhccccccCCCCCccHHHH
Confidence 554 6 799999999 777766653222 2456554
No 82
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.59 E-value=1.5e-07 Score=98.86 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=79.1
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND 435 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (534)
.-|+.+|.||..+.....+ . -.+.||++.++...+. .| ..
T Consensus 113 vGC~m~C~FC~tg~~g~~r----n--lta~EI~~qv~~~~~~-----~~--~~--------------------------- 152 (342)
T PRK14465 113 IGCTLNCKFCATAKLEFQG----N--LKAHEIVDQVLQVEKI-----VG--DR--------------------------- 152 (342)
T ss_pred CCCCCCCCCCcCCCCCccC----C--CCHHHHHHHHHHHHHh-----cC--CC---------------------------
Confidence 3599999999986533222 1 2677999999864321 12 11
Q ss_pred CCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhc---CC---cEEEEcCCCCHHHHhhcCC--CceE
Q 038595 436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRR---RI---STFLVTNAQFPDKIKLLKP--VTQL 506 (534)
Q Consensus 436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~---gi---~~~LvTNGtlpe~l~~L~~--v~ql 506 (534)
+.++.+.++|||++. ..+.+.++++++. ++ .+.+-|||..|...+-+.. --.|
T Consensus 153 ------------------~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~~~~~~L 214 (342)
T PRK14465 153 ------------------ATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIENKEPYNF 214 (342)
T ss_pred ------------------ceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhhccCceE
Confidence 345666899999995 7899999999875 33 5889999999776543221 2479
Q ss_pred EEEeeCCCHHHHHhhc
Q 038595 507 YVSVDAATKDSLKAID 522 (534)
Q Consensus 507 yvSlDA~~~e~y~~I~ 522 (534)
.|||||+|.+.+.++.
T Consensus 215 aiSLhA~~~e~R~~l~ 230 (342)
T PRK14465 215 AISLNHPDPNGRLQIM 230 (342)
T ss_pred EEEecCCChhhcceEe
Confidence 9999999999999996
No 83
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.58 E-value=2.2e-07 Score=97.58 Aligned_cols=66 Identities=18% Similarity=0.152 Sum_probs=54.0
Q ss_pred EEEeecCCCCCCc-cHHHHHHHHHh-cCC-----cEEEEcCCCCHHHHhhcCC---CceEEEEeeCCCHHHHHhhcC
Q 038595 457 CALSLVGEPIMYP-EINTLVDELHR-RRI-----STFLVTNAQFPDKIKLLKP---VTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 457 ~alSl~GEPlLyp-~L~elI~~lk~-~gi-----~~~LvTNGtlpe~l~~L~~---v~qlyvSlDA~~~e~y~~I~r 523 (534)
+.+-+.||||+++ .+.++++.+++ .|+ .+.|.|+|..|.. .+|.+ ...|.+||.|+|++.++++..
T Consensus 152 vV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i-~~l~~~~~~~~laisLka~d~e~r~~l~p 227 (342)
T PRK14454 152 IVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKI-YELADENLQITLAISLHAPNDELRKKMMP 227 (342)
T ss_pred EEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHH-HHHHhhcccceEEEecCCCCHHHHHHhcC
Confidence 3446779999987 59999999997 588 7899999999864 44443 234899999999999999985
No 84
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.56 E-value=2.6e-07 Score=97.69 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred CceEEEeecCCCCCCc-cHHHHHHHHHhc-CC-----cEEEEcCCCCHHHHhhcCCCc---eEEEEeeCCCHHHHHhhcC
Q 038595 454 PRHCALSLVGEPIMYP-EINTLVDELHRR-RI-----STFLVTNAQFPDKIKLLKPVT---QLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp-~L~elI~~lk~~-gi-----~~~LvTNGtlpe~l~~L~~v~---qlyvSlDA~~~e~y~~I~r 523 (534)
...+.++++||||+++ .+.++++.+++. |+ .+.|-|.|..| .+++|.+.+ .|.|||.++|++.++++..
T Consensus 161 ~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~~-~i~~L~~~dl~v~LaiSLha~d~e~r~~l~p 239 (356)
T PRK14462 161 RVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLAS-KIKKLGEMNLGVQLAISLHAVDDELRSELMP 239 (356)
T ss_pred cCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCChH-HHHHHHhcCCCeEEEEECCCCCHHHHHHhCC
Confidence 3467889999999975 788999999984 87 45999999776 555666534 3788999999999999974
No 85
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.54 E-value=4.5e-07 Score=82.71 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=92.8
Q ss_pred cEEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCC--------------ccC-------cCCCCeEEEEeccC
Q 038595 69 KGKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYE--------------PED-------LSKEALVLIVASSW 125 (534)
Q Consensus 69 kVlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d--------------~~d-------L~~~~lvIfv~STY 125 (534)
+|+|++||.. |+|+.+|+.+.+.+.+.|++++++++.+++ .++ +...+.+||++|+|
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y 81 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY 81 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE
Confidence 5899999985 999999999999999999999999999861 111 33578999999999
Q ss_pred CCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecc
Q 038595 126 EDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLP 195 (534)
Q Consensus 126 g~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~p 195 (534)
. |.+|.-++.|++++... ....++++.+++++.|-+.++ -..+...+..+|..+|+..+-.
T Consensus 82 ~-~~~s~~lK~~lD~~~~~------~~~~~~~K~~~~i~~~g~~~g--~~~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 82 N-GSVSGQLKNFLDRLSCW------FRRALRGKPVAIIAVGGGRRG--GLRALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp T-TBE-HHHHHHHHTHHHT------HTTTTTTSEEEEEEEESSSST--THHHHHHHHHHHHHTTBEEECC
T ss_pred c-CcCChhhhHHHHHhccc------cccccCCCEEEEEEEecCCcH--HHHHHHHHHHHHHHCCCEEcCC
Confidence 9 66667799999998641 135789999999987744332 2456778888888899876644
No 86
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.47 E-value=3.2e-07 Score=85.74 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=40.5
Q ss_pred eEEEeecCCCCCCc---cHHHHHHHHHhc-CCcEEEEcCCCCHHH-Hh-----hcCC-CceEEEEeeCCCHH
Q 038595 456 HCALSLVGEPIMYP---EINTLVDELHRR-RISTFLVTNAQFPDK-IK-----LLKP-VTQLYVSVDAATKD 516 (534)
Q Consensus 456 h~alSl~GEPlLyp---~L~elI~~lk~~-gi~~~LvTNGtlpe~-l~-----~L~~-v~qlyvSlDA~~~e 516 (534)
.++||+ |||+|++ .|.++++.+|+. ++.+.++|||..++. ++ ++++ +| + -||.+--+
T Consensus 66 gVt~sG-GEPllq~~~~~l~~ll~~~k~~~~~~~~~~~tG~~~~~~~~~~~~~~~l~~~D-~--liDgk~~~ 133 (154)
T TIGR02491 66 GLTLSG-GDPLYPRNVEELIELVKKIKAEFPEKDIWLWTGYTWEEILEDEKHLEVLKYID-V--LVDGKFEL 133 (154)
T ss_pred eEEEeC-hhhCCCCCHHHHHHHHHHHHHhCCCCCEEEeeCccHHHHhcchhHHHHHhhCC-E--EEechhhh
Confidence 356666 9999987 788888888876 788888999988543 32 4555 55 3 36666444
No 87
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=98.46 E-value=3.7e-07 Score=90.08 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=56.8
Q ss_pred CCCCCCcc-HHHHHHHHHhcCCcEEEEcCCCCH-HHHhhcCC-CceEEEEeeCCCHHHHHhhcC
Q 038595 463 GEPIMYPE-INTLVDELHRRRISTFLVTNAQFP-DKIKLLKP-VTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 463 GEPlLyp~-L~elI~~lk~~gi~~~LvTNGtlp-e~l~~L~~-v~qlyvSlDA~~~e~y~~I~r 523 (534)
|||||+++ +.++++.+|+.|+.+.|+|||..| +.+++|++ +|.+.+.|-+.|++.|+++.+
T Consensus 47 GEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG 110 (213)
T PRK10076 47 GEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVK 110 (213)
T ss_pred chHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHC
Confidence 99999996 689999999999999999999995 67888888 899999999999999999986
No 88
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.41 E-value=5.6e-07 Score=85.36 Aligned_cols=110 Identities=21% Similarity=0.189 Sum_probs=86.1
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
+++|+|+|.+|+|.++|+.|+..|.+.|++|++.|+.....-++.+++.+|++.|-|- |..-.....|+..-.+
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~~~~l~~ydavVIgAsI~~-~h~~~~~~~Fv~k~~e----- 75 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVEEPALEDYDAVVIGASIRY-GHFHEAVQSFVKKHAE----- 75 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhhccChhhCceEEEecchhh-hhhHHHHHHHHHHHHH-----
Confidence 4899999999999999999999999999999999999886557888999999999887 8777777888776544
Q ss_pred cccccCCCCCeEEEEEecCcchHHHH---HHHHHHHHHHHHHcCCc
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTF---NMVAKDLSKKMRELGAG 191 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~F---c~aAK~LDk~L~kLGA~ 191 (534)
.|+++..|+|.++=. | +.+ -.+-..+++.|.+--.+
T Consensus 76 -----~L~~kP~A~f~vnl~-a-~k~k~~~e~~~yv~kfl~~~~Wq 114 (175)
T COG4635 76 -----ALSTKPSAFFSVNLT-A-RKEKRTPETNSYVRKFLMKSPWQ 114 (175)
T ss_pred -----HHhcCCceEEEeehh-h-cccccCchHHHHHHHHHhcCCCc
Confidence 578899999987522 2 122 23344566666664443
No 89
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.38 E-value=1.9e-06 Score=91.60 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=55.6
Q ss_pred CceEEEeecCCCCCCc-cHHHHHHHHHh-cC--C---cEEEEcCCCCHHHHhhcCC-Cc-eEEEEeeCCCHHHHHhhcC
Q 038595 454 PRHCALSLVGEPIMYP-EINTLVDELHR-RR--I---STFLVTNAQFPDKIKLLKP-VT-QLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp-~L~elI~~lk~-~g--i---~~~LvTNGtlpe~l~~L~~-v~-qlyvSlDA~~~e~y~~I~r 523 (534)
++++.+.++||||++. .+.++++.+++ .| + .+.|-|+|..|. +++|.+ .+ .|.+||.|+|++.++++..
T Consensus 158 ~~nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~~~-i~~l~~~~d~~LaiSLha~d~e~R~~lmP 235 (372)
T PRK11194 158 ITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA-LDKLGDMIDVALAISLHAPNDELRDEIVP 235 (372)
T ss_pred cceEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCchH-HHHHHhccCeEEEeeccCCCHHHHHHhcC
Confidence 5778889999999965 67899999984 45 4 699999998774 455554 33 5889999999999999983
No 90
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=98.32 E-value=7.6e-07 Score=93.75 Aligned_cols=109 Identities=19% Similarity=0.236 Sum_probs=74.4
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND 435 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (534)
..|+..|+||.++..... . --.+.||++.+....+ .|.
T Consensus 104 vGC~~~C~FC~tg~~g~~-----R-nLs~~EI~~Qv~~~~~--------~~~---------------------------- 141 (344)
T PRK14464 104 VGCAVGCVFCMTGRSGLL-----R-QLGSAEIVAQVVLARR--------RRA---------------------------- 141 (344)
T ss_pred CCcCCCCCcCcCCCCCCC-----C-CCCHHHHHHHHHHHHh--------cCC----------------------------
Confidence 469999999998754321 1 2478899998864321 132
Q ss_pred CCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhc-CCcEE---EEcCCCCHHHHhhcCC--C-ceEE
Q 038595 436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRR-RISTF---LVTNAQFPDKIKLLKP--V-TQLY 507 (534)
Q Consensus 436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~-gi~~~---LvTNGtlpe~l~~L~~--v-~qly 507 (534)
++++.|+++||||++ ..+-+.|+.+++. +++.. +-|-| .++.+++|.. + ..|.
T Consensus 142 ------------------i~nIVfmGmGEPl~N~d~vl~ai~~l~~~~~i~~r~itiST~G-~~~~i~rL~~~~v~~~La 202 (344)
T PRK14464 142 ------------------VKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIGHKNLVFSTVG-DPRVFERLPQQRVKPALA 202 (344)
T ss_pred ------------------CCEEEEeccCcccCCHHHHHHHHHHhhchhcCCCceEEEeccc-CchHHHHHHHhcCChHHH
Confidence 577888999999996 4677777777643 44433 33334 3555666664 1 3466
Q ss_pred EEeeCCCHHHHHhhcCCC
Q 038595 508 VSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 508 vSlDA~~~e~y~~I~rP~ 525 (534)
+||+|++.+.+++|.+|-
T Consensus 203 iSLhA~~~e~R~~imP~~ 220 (344)
T PRK14464 203 LSLHTTRAELRARLLPRA 220 (344)
T ss_pred HHhcCCChhHhheeCCcc
Confidence 799999999999999763
No 91
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.31 E-value=2.6e-06 Score=80.16 Aligned_cols=126 Identities=21% Similarity=0.384 Sum_probs=70.4
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCC-----------------------c------cCcCCCCeEE
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE-----------------------P------EDLSKEALVL 119 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d-----------------------~------~dL~~~~lvI 119 (534)
|++|+|-|.||||+++|+.|++.+...- .++.....|. | .|+.++++++
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gadi--~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~I~ 78 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGADI--FEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDTIF 78 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-EE--EE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SEEE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCCE--EEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCEEE
Confidence 4799999999999999999999874310 1111111111 1 1345689999
Q ss_pred EEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEE
Q 038595 120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVE 198 (534)
Q Consensus 120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~ 198 (534)
++.|.|. |.+|.-+..|++. ..++|+.++.|-. |.+.. ..+.+.+.+.+ +...+.+...
T Consensus 79 lG~PvW~-~~~~~pv~tFL~~------------~~~~gK~v~~F~T~ggs~~----~~~~~~l~~~~---~~a~i~~g~~ 138 (156)
T PF12682_consen 79 LGTPVWW-GTPPPPVRTFLEQ------------YDFSGKTVIPFCTSGGSGF----GNSLEDLKKLC---PGATILEGLA 138 (156)
T ss_dssp EEEEEET-TEE-CHHHHHHHC------------TTTTTSEEEEEEE-SS--C----HHHHHHHHHH----TTSEE---EE
T ss_pred EechHHc-CCCCHHHHHHHHh------------cCCCCCcEEEEEeeCCCCh----hHHHHHHHHHC---CCCEeecCeE
Confidence 9999998 6666667777542 2578999999964 44433 34455555443 3344544444
Q ss_pred eeCCCCCcHHHHHHHHHHH
Q 038595 199 GDVDGGELDVVFEDWSKRV 217 (534)
Q Consensus 199 gD~~~g~~e~~f~eW~~~L 217 (534)
+....- .+..+.+|.++|
T Consensus 139 ~~~~~~-~~~~i~~Wl~~i 156 (156)
T PF12682_consen 139 INRGSV-SEEEIKEWLKKI 156 (156)
T ss_dssp ---S----HHHHHHHHHHT
T ss_pred EeCCCc-CHHHHHHHHHhC
Confidence 422211 367899998764
No 92
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.2e-06 Score=86.32 Aligned_cols=39 Identities=33% Similarity=0.507 Sum_probs=34.6
Q ss_pred EEeec-CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH
Q 038595 458 ALSLV-GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDK 496 (534)
Q Consensus 458 alSl~-GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~ 496 (534)
.||++ |||+++|.|.+|++.++++|+++.+.|||++|..
T Consensus 74 ~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~~~ 113 (212)
T COG0602 74 GVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIPVW 113 (212)
T ss_pred eEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCcccc
Confidence 34555 9998889999999999999999999999999654
No 93
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=98.29 E-value=2.2e-06 Score=86.68 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=78.4
Q ss_pred eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595 349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID 428 (534)
Q Consensus 349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
.+.+ .|..|+++|.||..+..++.+.. ...+..|++|++++.+. ++. |.
T Consensus 31 ~~~i-~s~~C~~~C~fC~~~~~~~~~~~-~~~~~~~eei~~~~~~~-----~~~-g~----------------------- 79 (296)
T TIGR00433 31 IMNI-KSGGCPEDCKYCSQSSRSKTGLP-IERLKKVDEVLEEARKA-----KAA-GA----------------------- 79 (296)
T ss_pred EEec-ccCCCCCCCcCCCCcccCCCCCc-cccCCCHHHHHHHHHHH-----HHC-CC-----------------------
Confidence 3455 47889999999988654432211 23457788998887542 221 32
Q ss_pred cCCCCCCCCcccccccHHHhhhccCCceEEE-eecCCCCCCc---cHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-
Q 038595 429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCAL-SLVGEPIMYP---EINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP- 502 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~al-Sl~GEPlLyp---~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~- 502 (534)
+.+.| +..++|...+ .+.++++.+++.|+.+ .+++|.+ ++.++.|..
T Consensus 80 --------------------------~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~-~~~~g~~~~e~l~~Lk~a 132 (296)
T TIGR00433 80 --------------------------TRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKT-CATLGLLDPEQAKRLKDA 132 (296)
T ss_pred --------------------------CEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeE-EecCCCCCHHHHHHHHHc
Confidence 23333 3345555433 5666666667778877 4566655 788888875
Q ss_pred -CceEEEEeeCCCHHHHHhhcCC
Q 038595 503 -VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 503 -v~qlyvSlDA~~~e~y~~I~rP 524 (534)
++.+.++++ .+++.|++|++.
T Consensus 133 G~~~v~i~~E-~~~~~~~~i~~~ 154 (296)
T TIGR00433 133 GLDYYNHNLD-TSQEFYSNIIST 154 (296)
T ss_pred CCCEEEEccc-CCHHHHhhccCC
Confidence 899999999 899999999974
No 94
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=98.25 E-value=3e-05 Score=73.26 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=87.8
Q ss_pred cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-----------------CCCCeEEEEeccCCCCC
Q 038595 69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-----------------SKEALVLIVASSWEDGK 129 (534)
Q Consensus 69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-----------------~~~~lvIfv~STYg~G~ 129 (534)
+++++.||. .++|.++++.+.+.+.+.|.+++++|+.+++..++ ...+.+||++|.|+ +.
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~-~s 79 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYK-AS 79 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCccc-CC
Confidence 478899995 78999999999999998899999999887654322 24589999999999 66
Q ss_pred CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce
Q 038595 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV 196 (534)
Q Consensus 130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl 196 (534)
+|...+.|++|+.. ..|+++.+++++.| ..++ ++-..-..+...|..+|+..+.+.
T Consensus 80 ip~~LK~~iD~~~~---------~~l~~K~v~~~~~g-g~~~-~~~~~~~~l~~~l~~l~~~~~~~~ 135 (171)
T TIGR03567 80 YSGVLKALLDLLPQ---------RALRGKVVLPIATG-GSIA-HLLAIDYALKPVLSALGARHILPG 135 (171)
T ss_pred CCHHHHHHHHhCCh---------hhhCCCEEEEEEcC-Cchh-HHHHHHHHHHHHHHHcCCccccce
Confidence 77778999998732 35889988888877 3343 333332457888889999755443
No 95
>PLN02389 biotin synthase
Probab=98.16 E-value=3.6e-06 Score=89.75 Aligned_cols=123 Identities=15% Similarity=0.263 Sum_probs=86.0
Q ss_pred eeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccc
Q 038595 348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAI 427 (534)
Q Consensus 348 ~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 427 (534)
..+.+ .|..|+++|.||-.......+.. .+.+-+|++|++.+.+.. .. |+.. |.+
T Consensus 84 ~i~n~-~T~~C~~~C~fCaqs~~~~~~~~-~~~~Ls~EeIl~~a~~~~-----~~-G~~~----~~i------------- 138 (379)
T PLN02389 84 TLLSI-KTGGCSEDCSYCPQSSRYDTGVK-AQKLMSKDDVLEAAKRAK-----EA-GSTR----FCM------------- 138 (379)
T ss_pred EEEEe-ccCCcCcCCCCCCCcccCCCCCc-ccccCCHHHHHHHHHHHH-----Hc-CCCE----EEE-------------
Confidence 34555 68889999999987532211111 244579999999876432 11 3321 111
Q ss_pred ccCCCCCCCCcccccccHHHhhhccCCceEEE-eecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC--C
Q 038595 428 DKQIPSNDGEEKEGGVTLERLNEGLTPRHCAL-SLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP--V 503 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~al-Sl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~--v 503 (534)
|+ +. ...|||..+.++.++++.+|+.++.+ .+|||.+ ++.++.|.. +
T Consensus 139 ---------------vt-------------s~rg~~~e~~~~e~i~eiir~ik~~~l~i-~~s~G~l~~E~l~~LkeAGl 189 (379)
T PLN02389 139 ---------------GA-------------AWRDTVGRKTNFNQILEYVKEIRGMGMEV-CCTLGMLEKEQAAQLKEAGL 189 (379)
T ss_pred ---------------Ee-------------cccCCCCChhHHHHHHHHHHHHhcCCcEE-EECCCCCCHHHHHHHHHcCC
Confidence 00 00 13588888999999999999888876 4789977 788999975 9
Q ss_pred ceEEEEeeCCCHHHHHhhcCCC
Q 038595 504 TQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+.+.+++|+ .++.|++|+.+.
T Consensus 190 d~~~~~LeT-s~~~y~~i~~~~ 210 (379)
T PLN02389 190 TAYNHNLDT-SREYYPNVITTR 210 (379)
T ss_pred CEEEeeecC-ChHHhCCcCCCC
Confidence 999999999 588999999764
No 96
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.16 E-value=2.8e-06 Score=79.39 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=40.2
Q ss_pred eec-CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCC
Q 038595 460 SLV-GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAAT 514 (534)
Q Consensus 460 Sl~-GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~ 514 (534)
+++ || ++++.|.++++.+|++|+++.|.||++.++..+++++ .+.+-+|.+=
T Consensus 66 t~SGGE-l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~--~iD~l~~g~y 118 (147)
T TIGR02826 66 LFLGGE-WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQ--HLDYLKTGRW 118 (147)
T ss_pred EEechh-cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH--hCCEEEEChH
Confidence 444 99 7778999999999999999999999999887776654 2333444443
No 97
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.14 E-value=7.7e-05 Score=72.40 Aligned_cols=114 Identities=18% Similarity=0.182 Sum_probs=88.3
Q ss_pred cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-----------------CCCCeEEEEeccCCCCC
Q 038595 69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-----------------SKEALVLIVASSWEDGK 129 (534)
Q Consensus 69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-----------------~~~~lvIfv~STYg~G~ 129 (534)
+|+++.||. .++|.++++.+.+.+.+.|.+++++|+.++++.++ ...+.+||++|.|. |.
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~-~s 80 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYK-AS 80 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccC-CC
Confidence 489999998 47899999999999999999999999988765332 23589999999998 77
Q ss_pred CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 130 PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 130 pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
+|.-.+.|++|+.. ..|+++.+++++.|.+ .+ +.-..--.+...|..|||..+.
T Consensus 81 ~pg~LKn~iD~l~~---------~~l~~K~v~iiat~G~-~~-~~~~~~~~lr~~l~~l~a~~~~ 134 (191)
T PRK10569 81 FSGALKTLLDLLPE---------RALEHKVVLPLATGGS-VA-HMLAVDYALKPVLSALKAQEIL 134 (191)
T ss_pred CCHHHHHHHHhCCh---------hhhCCCEEEEEEecCC-ch-hHHHHHHHHHHHHHHcCCeecC
Confidence 88889999999832 3689999999998733 32 2222224566788889997653
No 98
>PRK07094 biotin synthase; Provisional
Probab=98.11 E-value=1.3e-05 Score=82.38 Aligned_cols=119 Identities=20% Similarity=0.300 Sum_probs=81.8
Q ss_pred CeeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccc
Q 038595 347 HRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSA 426 (534)
Q Consensus 347 ~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~ 426 (534)
|.|.-+..|..|+++|.||-.+..+.. ..+.. -+|++|++.+... .. .|+
T Consensus 38 ~~~~~i~~s~gC~~~C~fC~~~~~~~~--~~r~~-ls~eei~~~~~~~-----~~-~g~--------------------- 87 (323)
T PRK07094 38 HLRGLIEFSNYCRNNCLYCGLRRDNKN--IERYR-LSPEEILECAKKA-----YE-LGY--------------------- 87 (323)
T ss_pred EEEEEEEECCCCCCCCEeCCcccCCCC--CcCcC-CCHHHHHHHHHHH-----HH-CCC---------------------
Confidence 345555568899999999987654321 11222 3788999876432 22 133
Q ss_pred cccCCCCCCCCcccccccHHHhhhccCCceEEEeecCC-CCC-CccHHHHHHHHHhc-CCcEEEEcCCCC-HHHHhhcCC
Q 038595 427 IDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIM-YPEINTLVDELHRR-RISTFLVTNAQF-PDKIKLLKP 502 (534)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlL-yp~L~elI~~lk~~-gi~~~LvTNGtl-pe~l~~L~~ 502 (534)
+.+.|+ .|+ |.+ .+++.++++.+++. ++.+.+ +.|.+ ++.++.|..
T Consensus 88 ----------------------------~~i~l~-gG~~~~~~~~~l~~l~~~i~~~~~l~i~~-~~g~~~~e~l~~Lk~ 137 (323)
T PRK07094 88 ----------------------------RTIVLQ-SGEDPYYTDEKIADIIKEIKKELDVAITL-SLGERSYEEYKAWKE 137 (323)
T ss_pred ----------------------------CEEEEe-cCCCCCCCHHHHHHHHHHHHccCCceEEE-ecCCCCHHHHHHHHH
Confidence 233343 465 444 35899999999985 776654 44554 788888875
Q ss_pred --CceEEEEeeCCCHHHHHhhcCCC
Q 038595 503 --VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 503 --v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
++.+.+++++.+++.|++++++.
T Consensus 138 aG~~~v~~glEs~~~~~~~~i~~~~ 162 (323)
T PRK07094 138 AGADRYLLRHETADKELYAKLHPGM 162 (323)
T ss_pred cCCCEEEeccccCCHHHHHHhCCCC
Confidence 89999999999999999999753
No 99
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=98.04 E-value=8.3e-05 Score=70.31 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=84.1
Q ss_pred cEEEEEECc--cchHHHHHHHHHHHHh-hCCCceEEECCCCCCc------------cC-------cCCCCeEEEEeccCC
Q 038595 69 KGKLFFISQ--TGTSKTLAKRLHALLT-SNDLLFDLVDPQTYEP------------ED-------LSKEALVLIVASSWE 126 (534)
Q Consensus 69 kVlI~YgSq--TGtTE~lAe~La~~L~-~~Gl~v~V~dL~d~d~------------~d-------L~~~~lvIfv~STYg 126 (534)
||+++.||. .++|..+|+.+.+.+. ..|.+++++|+.++++ ++ +...+.+||++|.|+
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~ 80 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVYR 80 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcCc
Confidence 489999998 5899999999999986 5688999999877631 11 124689999999999
Q ss_pred CCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 127 DGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 127 ~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
|.+|.-.+.|++|+.. ..|+++.+++++.|....+ .......+...|.-+|+..+-
T Consensus 81 -~s~~~~LKn~lD~~~~---------~~l~~K~~~~v~~~g~~~~--~~~~~~~l~~~~~~l~~~~~~ 136 (174)
T TIGR03566 81 -GSYTGLFKHLFDLVDP---------NALIGKPVLLAATGGSERH--ALMVEHQLRPLFGFFQALTLP 136 (174)
T ss_pred -CcCcHHHHHHHHhcCH---------hHhCCCEEEEEEecCCccc--hHHHHHHHHHHHHHhCccccc
Confidence 6677778899988742 3588999999988644332 122334466777888876553
No 100
>PRK06934 flavodoxin; Provisional
Probab=98.01 E-value=3.4e-05 Score=76.93 Aligned_cols=121 Identities=14% Similarity=0.189 Sum_probs=72.3
Q ss_pred cchHHHHHHHHHHHHhhCCCceEEECCC--CC---------------Cc------cCcCCCCeEEEEeccCCCCCCchHH
Q 038595 78 TGTSKTLAKRLHALLTSNDLLFDLVDPQ--TY---------------EP------EDLSKEALVLIVASSWEDGKPPEAA 134 (534)
Q Consensus 78 TGtTE~lAe~La~~L~~~Gl~v~V~dL~--d~---------------d~------~dL~~~~lvIfv~STYg~G~pPdna 134 (534)
+|||+++|+.|++.+...-++++..+.- ++ .| .++..++.++|+.|.|. |.+|.-+
T Consensus 70 ~GnTk~vAe~Ia~~~gaDl~eI~~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIWw-g~~P~~V 148 (221)
T PRK06934 70 LGSTQYVAQIIQEETGGDLFRIETVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIWW-YKMPMVM 148 (221)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchhh-ccccHHH
Confidence 3999999999999986543333333321 11 11 23456899999999999 6666667
Q ss_pred HHHHHHHHhhcCcccccccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHHHHcCCceecceEEee--C-CCCCcHHHH
Q 038595 135 KFFMNWIDESANDFRVGSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGD--V-DGGELDVVF 210 (534)
Q Consensus 135 ~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD--~-~~g~~e~~f 210 (534)
..|++. ..|+|+.++.|.. |-+.. ......+.+.+. +++.+.+-..+. . .....+..+
T Consensus 149 ~tFLe~------------~d~~GK~I~pF~T~ggsg~----g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~~~~~~~~~I 210 (221)
T PRK06934 149 YSFFEQ------------HDFSGKTLIPFTTHGGSRF----SDSLREIKRLQP--NAQLVTQGLAISRNDVTDDDTPKEI 210 (221)
T ss_pred HHHHHh------------cCCCCCEEEEEEecCCCCc----cchHHHHHHHcC--CcceeccceeeecCcccccchHHHH
Confidence 777543 2578999999974 33333 234444444422 332344433322 1 111246789
Q ss_pred HHHHHHH
Q 038595 211 EDWSKRV 217 (534)
Q Consensus 211 ~eW~~~L 217 (534)
.+|.+++
T Consensus 211 ~~Wl~~l 217 (221)
T PRK06934 211 INWLNTL 217 (221)
T ss_pred HHHHHHc
Confidence 9998764
No 101
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=98.00 E-value=1e-05 Score=84.57 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=44.6
Q ss_pred CceEEEeecCCCCCCcc--HHHHHHHHHhc----CCcEEEEcCCCCH-----HHHhhcCC--CceEEEEeeCCCHHHHH
Q 038595 454 PRHCALSLVGEPIMYPE--INTLVDELHRR----RISTFLVTNAQFP-----DKIKLLKP--VTQLYVSVDAATKDSLK 519 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~--L~elI~~lk~~----gi~~~LvTNGtlp-----e~l~~L~~--v~qlyvSlDA~~~e~y~ 519 (534)
++.+.||| |||++.+. |.++++.+++. ++.+..-||+++| +.++.|.. +..+.++.+...+|...
T Consensus 160 i~eV~lsG-GDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~~~vsh~nh~~Ei~~ 237 (331)
T TIGR00238 160 IIEILISG-GDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQLMLVTHINHCNEITE 237 (331)
T ss_pred cCEEEEEC-CccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcEEEEccCCChHhCCH
Confidence 35567777 99999986 99999999885 4556666677754 44444443 56778886666555443
No 102
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=97.94 E-value=4.9e-05 Score=80.66 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=78.2
Q ss_pred ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595 352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI 431 (534)
Q Consensus 352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (534)
+..|..|+++|.||--...+... ...-+|++|++.+... ... |
T Consensus 78 in~Tn~C~~~C~YC~f~~~~~~~----~~~ls~eEI~~~a~~~-----~~~-G--------------------------- 120 (371)
T PRK09240 78 LYLSNYCANDCTYCGFSMSNKIK----RKTLDEEEIEREMAAI-----KKL-G--------------------------- 120 (371)
T ss_pred eEEcccccCcCCcCCCCCCCCCc----cccCCHHHHHHHHHHH-----HhC-C---------------------------
Confidence 44589999999999875443221 2457899999987643 221 3
Q ss_pred CCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc---cHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC--CceE
Q 038595 432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP---EINTLVDELHRRRISTFLVTNAQFPDKIKLLKP--VTQL 506 (534)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp---~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~--v~ql 506 (534)
++++.|.+ |||.... ++.++++.+++.--.+.+.+|..-.+.++.|.. ++.+
T Consensus 121 ----------------------v~~i~lvg-Ge~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 121 ----------------------FEHILLLT-GEHEAKVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGV 177 (371)
T ss_pred ----------------------CCEEEEee-CCCCCCCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEE
Confidence 35566666 9987754 566666666654212445556555788888876 9999
Q ss_pred EEEeeCCCHHHHHhhc
Q 038595 507 YVSVDAATKDSLKAID 522 (534)
Q Consensus 507 yvSlDA~~~e~y~~I~ 522 (534)
.+++++.+++.|++|+
T Consensus 178 ~i~lET~~~~~~~~i~ 193 (371)
T PRK09240 178 TVYQETYNPATYAKHH 193 (371)
T ss_pred EEEEecCCHHHHHHhC
Confidence 9999999999999998
No 103
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=97.91 E-value=4.8e-05 Score=80.53 Aligned_cols=110 Identities=20% Similarity=0.180 Sum_probs=73.6
Q ss_pred cccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCC
Q 038595 353 TPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIP 432 (534)
Q Consensus 353 ~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (534)
.+|..|+++|.||.....+... + ..-++++|++.+... ..+ |
T Consensus 78 ~~Tn~C~~~C~yC~~s~~~~~~---~-~~Ls~eEI~~~a~~~-----~~~-G---------------------------- 119 (366)
T TIGR02351 78 YLSNYCSNKCVYCGFSMSNKIK---R-KKLNEEEIEREIEAI-----KKS-G---------------------------- 119 (366)
T ss_pred eECccccCCCCcCCCCCCCCCc---c-CcCCHHHHHHHHHHH-----HhC-C----------------------------
Confidence 4799999999999886544321 1 335788898877532 222 3
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCC---ccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC--CceEE
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY---PEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP--VTQLY 507 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy---p~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~--v~qly 507 (534)
++++.|. +||+..+ .+|.++++.+++..-.+.+..+-.-.+.++.|.. ++.++
T Consensus 120 ---------------------v~~i~lv-gGe~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~~ 177 (366)
T TIGR02351 120 ---------------------FKEILLV-TGESEKAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGVT 177 (366)
T ss_pred ---------------------CCEEEEe-eCCCCCCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEEE
Confidence 2344444 3664443 2588888888875211222333333677777775 99999
Q ss_pred EEeeCCCHHHHHhhc
Q 038595 508 VSVDAATKDSLKAID 522 (534)
Q Consensus 508 vSlDA~~~e~y~~I~ 522 (534)
+++++.|++.|++|+
T Consensus 178 i~lET~~~~~y~~i~ 192 (366)
T TIGR02351 178 VYQETYNEKKYKKHH 192 (366)
T ss_pred EEeecCCHHHHHhcC
Confidence 999999999999998
No 104
>PRK06256 biotin synthase; Validated
Probab=97.91 E-value=3.3e-05 Score=80.00 Aligned_cols=113 Identities=12% Similarity=0.205 Sum_probs=75.7
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (534)
|..|+++|.||..+...... ..++.+-+|++|++.+.++.+ . |+
T Consensus 65 s~~C~~~C~fC~~~~~~~~~-~~~~~~~s~eeI~~~~~~~~~-----~-g~----------------------------- 108 (336)
T PRK06256 65 SGLCPEDCGYCSQSAGSSAP-VYRYAWLDIEELIEAAKEAIE-----E-GA----------------------------- 108 (336)
T ss_pred CCCCCCCCccCCCcCCCCCC-CceecCCCHHHHHHHHHHHHH-----C-CC-----------------------------
Confidence 57899999999886543211 112334689999998865422 1 32
Q ss_pred CCCcccccccHHHhhhccCCceEEE-eecCCCCCC--ccHHHHHHHHHhc-CCcEEEEcCCCC-HHHHhhcCC--CceEE
Q 038595 435 DGEEKEGGVTLERLNEGLTPRHCAL-SLVGEPIMY--PEINTLVDELHRR-RISTFLVTNAQF-PDKIKLLKP--VTQLY 507 (534)
Q Consensus 435 ~~~~~~~~~~~~~~~ea~~~~h~al-Sl~GEPlLy--p~L~elI~~lk~~-gi~~~LvTNGtl-pe~l~~L~~--v~qly 507 (534)
+.+.| +..++|... +++.++++.+++. ++.+ .+++|.+ ++.++.|.. ++.+.
T Consensus 109 --------------------~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~-~~~~g~l~~e~l~~LkeaG~~~v~ 167 (336)
T PRK06256 109 --------------------GTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEI-CACLGLLTEEQAERLKEAGVDRYN 167 (336)
T ss_pred --------------------CEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcE-EecCCcCCHHHHHHHHHhCCCEEe
Confidence 11222 333456554 4788899999876 3333 3455665 788888875 88999
Q ss_pred EEeeCCCHHHHHhhcCCC
Q 038595 508 VSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 508 vSlDA~~~e~y~~I~rP~ 525 (534)
+++++ +++.|++|++..
T Consensus 168 ~~lEt-s~~~~~~i~~~~ 184 (336)
T PRK06256 168 HNLET-SRSYFPNVVTTH 184 (336)
T ss_pred cCCcc-CHHHHhhcCCCC
Confidence 99999 999999999753
No 105
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=97.87 E-value=5.5e-05 Score=78.77 Aligned_cols=61 Identities=20% Similarity=0.332 Sum_probs=42.6
Q ss_pred ceEEEeecCCCCCC--ccHHHHHHHHHhcC-Cc-EEEEc-----CCCC--HHHHhhcCCC-ceEEEEeeCCCHH
Q 038595 455 RHCALSLVGEPIMY--PEINTLVDELHRRR-IS-TFLVT-----NAQF--PDKIKLLKPV-TQLYVSVDAATKD 516 (534)
Q Consensus 455 ~h~alSl~GEPlLy--p~L~elI~~lk~~g-i~-~~LvT-----NGtl--pe~l~~L~~v-~qlyvSlDA~~~e 516 (534)
+.+.||+ |||+++ ++|.++++.+++.+ +. +.+.| |+++ ++.++.|... .+++||+|+..+.
T Consensus 138 ~~VilSG-GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~ 210 (321)
T TIGR03822 138 WEVILTG-GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHAR 210 (321)
T ss_pred cEEEEeC-CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChh
Confidence 3455565 999997 58999999999885 32 45656 4443 5666666541 3589999997543
No 106
>PRK05660 HemN family oxidoreductase; Provisional
Probab=97.85 E-value=9.8e-05 Score=78.36 Aligned_cols=68 Identities=19% Similarity=0.349 Sum_probs=56.6
Q ss_pred EEeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 458 ALSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 458 alSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+|-+. |+|++. ..|.++++.+++. +..+.+.||... ++.++.|.. ++++.|+|++.+++.++.++|++
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence 34444 999996 4899999999983 456889999654 788887775 89999999999999999999975
No 107
>PRK00170 azoreductase; Reviewed
Probab=97.85 E-value=0.00036 Score=66.65 Aligned_cols=128 Identities=16% Similarity=0.118 Sum_probs=87.7
Q ss_pred cEEEEEECc--c-chHHHHHHHHHHHHhhC--CCceEEECCCCCCcc---------------------------------
Q 038595 69 KGKLFFISQ--T-GTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPE--------------------------------- 110 (534)
Q Consensus 69 kVlI~YgSq--T-GtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~--------------------------------- 110 (534)
+|+|++||- . |+|.++|+.+.+.|.+. |.+++++||.+.+..
T Consensus 3 kil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 82 (201)
T PRK00170 3 KVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLE 82 (201)
T ss_pred eEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHH
Confidence 589999996 3 88999999999999987 889999999765421
Q ss_pred CcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccc----cccCCCCCeEEEEEe-cCcchHHHHHHHHHHHHHHH
Q 038595 111 DLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRV----GSLLLSNCKFAVFGV-GSKSYEKTFNMVAKDLSKKM 185 (534)
Q Consensus 111 dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv----~~~~Lkgl~yAVFGL-GDs~Y~e~Fc~aAK~LDk~L 185 (534)
.+...+.+||++|.|. +.+|.-.+.|++++.....-|+. ....|+++++.++.. |...-...+..+...+...|
T Consensus 83 ~i~~AD~iV~~sP~y~-~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK00170 83 EFLAADKIVIAAPMYN-FSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKTFL 161 (201)
T ss_pred HHHHCCEEEEeecccc-cCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHHHH
Confidence 0234589999999999 55666688888887543212221 123578898888875 43210001234456677788
Q ss_pred HHcCCceecceE
Q 038595 186 RELGAGEVLPVV 197 (534)
Q Consensus 186 ~kLGA~rV~plg 197 (534)
.-+|.+.+....
T Consensus 162 ~~~G~~~~~~~~ 173 (201)
T PRK00170 162 GFIGITDVEFVF 173 (201)
T ss_pred HhcCCCceEEEE
Confidence 888987654443
No 108
>PRK01355 azoreductase; Reviewed
Probab=97.78 E-value=0.00066 Score=65.78 Aligned_cols=154 Identities=14% Similarity=0.051 Sum_probs=100.9
Q ss_pred cEEEEEECcc----chHHHHHHHHHHHHhhC--CCceEEECCCCCCcc----------------C-------cCCCCeEE
Q 038595 69 KGKLFFISQT----GTSKTLAKRLHALLTSN--DLLFDLVDPQTYEPE----------------D-------LSKEALVL 119 (534)
Q Consensus 69 kVlI~YgSqT----GtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~~----------------d-------L~~~~lvI 119 (534)
+|+|+.||-. |+|..+|+.+.+.+.+. +..++++||.+.++. + +...+.+|
T Consensus 3 kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV 82 (199)
T PRK01355 3 KVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVV 82 (199)
T ss_pred eEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEE
Confidence 5899999984 88999999999999874 588999999876531 1 12458999
Q ss_pred EEeccCCCCCCchHHHHHHHHHHhhcCccccc-------ccCCCCCeEEEEE-ecCcchHHHHHHHHHHHHHHHHHcCCc
Q 038595 120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVG-------SLLLSNCKFAVFG-VGSKSYEKTFNMVAKDLSKKMRELGAG 191 (534)
Q Consensus 120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~-------~~~Lkgl~yAVFG-LGDs~Y~e~Fc~aAK~LDk~L~kLGA~ 191 (534)
|++|.|. +.+|.-.+.|++++.....-|... ...|++++..|+. .|.......|..+...+...+.-+|.+
T Consensus 83 ~~sP~y~-~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G~~ 161 (199)
T PRK01355 83 ISCPMTN-FNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLGAK 161 (199)
T ss_pred EEcCccc-cCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcCCC
Confidence 9999999 566777899999986542222211 1247788777764 443221001345566788888889998
Q ss_pred eecceEEeeCCCCCc-HHHHHHHHHHHHHHHHh
Q 038595 192 EVLPVVEGDVDGGEL-DVVFEDWSKRVVAILKS 223 (534)
Q Consensus 192 rV~plg~gD~~~g~~-e~~f~eW~~~L~~~L~~ 223 (534)
.+............+ .....+|.+.-.+.+.+
T Consensus 162 ~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 162 VVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred ceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 766554444332111 02266666665555543
No 109
>PRK09739 hypothetical protein; Provisional
Probab=97.74 E-value=0.00092 Score=64.53 Aligned_cols=151 Identities=11% Similarity=0.108 Sum_probs=96.4
Q ss_pred cEEEEEECc--cchHHHHHHHHHHHHhhCCCceEEECCCCCCcc---------------------------CcCCCCeEE
Q 038595 69 KGKLFFISQ--TGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE---------------------------DLSKEALVL 119 (534)
Q Consensus 69 kVlI~YgSq--TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~---------------------------dL~~~~lvI 119 (534)
+++|+++|- .++|..+++.+.+.+.+.|.+++++||.+.+++ .+...+.+|
T Consensus 5 kiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV 84 (199)
T PRK09739 5 RIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALV 84 (199)
T ss_pred eEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEE
Confidence 589999987 577899999999999999999999998764320 123468999
Q ss_pred EEeccCCCCCCchHHHHHHHHHHhhcCccccc-ccCCCCCeEEEEEe-cCcc--hHH-HHHH-HHHHHH-HHHHHcCCce
Q 038595 120 IVASSWEDGKPPEAAKFFMNWIDESANDFRVG-SLLLSNCKFAVFGV-GSKS--YEK-TFNM-VAKDLS-KKMRELGAGE 192 (534)
Q Consensus 120 fv~STYg~G~pPdna~~Fle~L~e~~~DFRv~-~~~Lkgl~yAVFGL-GDs~--Y~e-~Fc~-aAK~LD-k~L~kLGA~r 192 (534)
|++|-|. +.+|.-.+.|++++-... |..+ ...|.+++..++.. |.+. |.. .|.. .-..+. ..+.-+|.+.
T Consensus 85 ~~~P~y~-~~~Pa~LK~~iD~v~~~g--~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~~ 161 (199)
T PRK09739 85 FVFPLWW-YSFPAMLKGYIDRVWNNG--LAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGIED 161 (199)
T ss_pred EECchhh-hcchHHHHHHHHHHcccc--ccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCccc
Confidence 9999999 556666788887764322 3222 23578888777654 4332 110 1222 223344 4455678766
Q ss_pred ecceEEeeCC-----CCCcHHHHHHHHHHHHHHHHh
Q 038595 193 VLPVVEGDVD-----GGELDVVFEDWSKRVVAILKS 223 (534)
Q Consensus 193 V~plg~gD~~-----~g~~e~~f~eW~~~L~~~L~~ 223 (534)
+-+...+... +. ..+..+.|.+++......
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~~~~~~~l~~a~~~~~~ 196 (199)
T PRK09739 162 SDVTFLYNTLVFDGEEL-HASHYQSLLSQAREMVDA 196 (199)
T ss_pred cceEEEecccccccccC-CHHHHHHHHHHHHHHHHH
Confidence 5433333332 22 245678888887766543
No 110
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=97.71 E-value=2.6e-05 Score=81.29 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=40.6
Q ss_pred CceEEEeecCCCCCCcc--HHHHHHHHHhcCC--cEEEE-------cCCCCHHHHhhcCC--CceE-EEEeeCCCHHHHH
Q 038595 454 PRHCALSLVGEPIMYPE--INTLVDELHRRRI--STFLV-------TNAQFPDKIKLLKP--VTQL-YVSVDAATKDSLK 519 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~--L~elI~~lk~~gi--~~~Lv-------TNGtlpe~l~~L~~--v~ql-yvSlDA~~~e~y~ 519 (534)
++.+.||| |||++.++ |.++++.+..... .+.+- +|--.++.++.|.. +..+ .+|+|.+. |.+.
T Consensus 143 i~~VvltG-GEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~-Ei~d 220 (321)
T TIGR03821 143 INEVILSG-GDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHAN-EIDA 220 (321)
T ss_pred CCEEEEeC-cccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChH-hCcH
Confidence 45677898 99999987 9999988776421 23333 34222555555543 3344 46999984 6554
Q ss_pred h
Q 038595 520 A 520 (534)
Q Consensus 520 ~ 520 (534)
.
T Consensus 221 ~ 221 (321)
T TIGR03821 221 E 221 (321)
T ss_pred H
Confidence 4
No 111
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=97.67 E-value=0.00021 Score=77.52 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=56.3
Q ss_pred EEeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 458 ALSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 458 alSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+|.+. |+|++. ++|.++++.+++. +..+.+.||+.. ++.++.|.. +..|.|+|++.+++.++.++|..
T Consensus 105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~ 184 (453)
T PRK09249 105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ 184 (453)
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 34443 999985 5999999999875 346889999865 777877775 89999999999999999999974
No 112
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=97.64 E-value=0.00036 Score=73.38 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=54.7
Q ss_pred Eeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 459 LSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 459 lSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
|-+. |+|++. ++|.++++.+++. ++.+.+.||+.. ++.++.|.. ++.+.|+|++.+++.++.+.|+.
T Consensus 55 i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~~ 133 (360)
T TIGR00539 55 IFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQH 133 (360)
T ss_pred EEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCCC
Confidence 4444 999985 5899999888753 456889999875 677777765 89999999999999999999875
No 113
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=97.60 E-value=0.00029 Score=76.20 Aligned_cols=60 Identities=18% Similarity=0.309 Sum_probs=41.7
Q ss_pred eEEEeecCCCCCCcc--HHHHHHHHHhc-CCc-EEEEcC-----CCC--HHHHhhcCC--CceEEEEeeCCCHHH
Q 038595 456 HCALSLVGEPIMYPE--INTLVDELHRR-RIS-TFLVTN-----AQF--PDKIKLLKP--VTQLYVSVDAATKDS 517 (534)
Q Consensus 456 h~alSl~GEPlLyp~--L~elI~~lk~~-gi~-~~LvTN-----Gtl--pe~l~~L~~--v~qlyvSlDA~~~e~ 517 (534)
.+-||+ |||++.+. |..+++.|++. ++. +.+-|| +++ ++.++.|.. ..++.+++|.+ +|.
T Consensus 158 ~VlLSG-GDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp-~Ei 230 (417)
T TIGR03820 158 DVLLSG-GDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHP-REI 230 (417)
T ss_pred EEEEeC-CccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCCh-HhC
Confidence 344443 99999876 77788999987 776 778888 554 555555543 35677888887 343
No 114
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=97.60 E-value=0.00034 Score=75.94 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=54.2
Q ss_pred cCCCCC--CccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 462 VGEPIM--YPEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 462 ~GEPlL--yp~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
.|+|++ .++|.++++.+++. +..+.+.||+.. ++.++.|.. +..+.|+|++.+++.++.++|+.
T Consensus 110 GGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~ 184 (455)
T TIGR00538 110 GGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQ 184 (455)
T ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCC
Confidence 399996 46999999999984 456888999865 777877775 89999999999999999999974
No 115
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=97.60 E-value=0.0014 Score=62.87 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=104.7
Q ss_pred cEEEEEECccc---hHHHHHHHHHHHHhhCC-CceEEECCCCC--------------C----c---------cCcCCCCe
Q 038595 69 KGKLFFISQTG---TSKTLAKRLHALLTSND-LLFDLVDPQTY--------------E----P---------EDLSKEAL 117 (534)
Q Consensus 69 kVlI~YgSqTG---tTE~lAe~La~~L~~~G-l~v~V~dL~d~--------------d----~---------~dL~~~~l 117 (534)
+|+|+++|-.+ ++.++|+.+.+.+++.+ .+++++||.+. . . +.|...+.
T Consensus 2 kiLvI~asp~~~~S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~ 81 (199)
T PF02525_consen 2 KILVINASPRPEGSFSRALADAFLEGLQEAGPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWADH 81 (199)
T ss_dssp EEEEEE--SSTTTSHHHHHHHHHHHHHHHHTTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSSE
T ss_pred EEEEEEcCCCCccCHHHHHHHHHHHHHHHcCCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcCc
Confidence 58999999887 58999999999999999 89999999884 0 0 22345689
Q ss_pred EEEEeccCCCCCCchHHHHHHHHHHhhcCcc-c-----ccccCCCCCeEEEE-EecCcchH--------HHHHHHHHHHH
Q 038595 118 VLIVASSWEDGKPPEAAKFFMNWIDESANDF-R-----VGSLLLSNCKFAVF-GVGSKSYE--------KTFNMVAKDLS 182 (534)
Q Consensus 118 vIfv~STYg~G~pPdna~~Fle~L~e~~~DF-R-----v~~~~Lkgl~yAVF-GLGDs~Y~--------e~Fc~aAK~LD 182 (534)
+||+.|.|..| +|.-.+.|++.+-....=| . .....|+|+++.++ ..|...+. ..+..+...+.
T Consensus 82 iV~~~Pl~~~~-~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~ 160 (199)
T PF02525_consen 82 IVFAFPLYWFS-MPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLR 160 (199)
T ss_dssp EEEEEEEBTTB-C-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHH
T ss_pred ceEeccceecc-cChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhHHHHH
Confidence 99999999955 5556777777763222112 0 12457889887766 46655321 13455666688
Q ss_pred HHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHHHHH
Q 038595 183 KKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAIL 221 (534)
Q Consensus 183 k~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L 221 (534)
..+.-+|.+.+-.....+....+.++.++++.+++.+.|
T Consensus 161 ~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 161 GILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 888889999997766655543233677888888887765
No 116
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=97.55 E-value=0.00057 Score=72.96 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=54.8
Q ss_pred CCceEEEeecCCCCC-CccHHHHHHHHHhc---CC---cEEEEcCCCCHHHHhhcCC---CceEEEEeeCCCHHHHHhhc
Q 038595 453 TPRHCALSLVGEPIM-YPEINTLVDELHRR---RI---STFLVTNAQFPDKIKLLKP---VTQLYVSVDAATKDSLKAID 522 (534)
Q Consensus 453 ~~~h~alSl~GEPlL-yp~L~elI~~lk~~---gi---~~~LvTNGtlpe~l~~L~~---v~qlyvSlDA~~~e~y~~I~ 522 (534)
+++++.+.++|||++ |..+.+.|+.+... ++ .+.+=|-|-.|.+ ++|.. --.|.|||.|++.+.-++|-
T Consensus 168 ~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I-~~la~~~~~v~LAiSLHA~~~e~R~~lm 246 (371)
T PRK14461 168 RVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGI-RRLANERLPINLAISLHAPDDALRSELM 246 (371)
T ss_pred ceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHH-HHHHhcccCceEEEEeCCCCHHHHHHhc
Confidence 378999999999999 57899999999653 44 3677788865543 33332 25699999999999988887
Q ss_pred CCCC
Q 038595 523 RPLF 526 (534)
Q Consensus 523 rP~~ 526 (534)
|.-
T Consensus 247 -Pin 249 (371)
T PRK14461 247 -PVN 249 (371)
T ss_pred -Ccc
Confidence 643
No 117
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=97.53 E-value=8.5e-05 Score=69.72 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=41.1
Q ss_pred EEEeecCCCCCCccHHHHHH---HHHhc--CCcEEEEcCCCCHHHHh----hcCCCceEEEEeeCCCHHHHHhhcCCCCC
Q 038595 457 CALSLVGEPIMYPEINTLVD---ELHRR--RISTFLVTNAQFPDKIK----LLKPVTQLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~---~lk~~--gi~~~LvTNGtlpe~l~----~L~~v~qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
++|| .|||++++.+.++++ .+|+. +..+ +++||.+.+.+. +++ +.+-|-||++-.+..+...++..+
T Consensus 69 vt~s-GGEPl~~~~~~~l~~l~~~~k~~~~~~~i-~~~tGy~~eel~~~~~~~l--~~~DvlvDG~~~~~~~~~~~~~~G 144 (154)
T PRK11121 69 LSLS-GGDPLHPQNVPDILKLVQRVKAECPGKDI-WVWTGYKLDELNAAQRQVV--DLIDVLVDGKFVQDLADPSLIWRG 144 (154)
T ss_pred EEEE-CCCccchhhHHHHHHHHHHHHHHCCCCCE-EEecCCCHHHHHHHHHHHH--hhCCEEEechhhhhccccCCCCCC
Confidence 3443 389999765555554 44443 3444 678998855432 233 345588999876666666655444
Q ss_pred c
Q 038595 528 D 528 (534)
Q Consensus 528 ~ 528 (534)
.
T Consensus 145 S 145 (154)
T PRK11121 145 S 145 (154)
T ss_pred C
Confidence 3
No 118
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=97.53 E-value=0.00012 Score=78.98 Aligned_cols=82 Identities=24% Similarity=0.308 Sum_probs=70.7
Q ss_pred ccHHHhhhcc------C-CceEEEeec-CCCCCCccHHHHHHHHHhcCCc-EEEEcCCCC----HHHHhhcCC--CceEE
Q 038595 443 VTLERLNEGL------T-PRHCALSLV-GEPIMYPEINTLVDELHRRRIS-TFLVTNAQF----PDKIKLLKP--VTQLY 507 (534)
Q Consensus 443 ~~~~~~~ea~------~-~~h~alSl~-GEPlLyp~L~elI~~lk~~gi~-~~LvTNGtl----pe~l~~L~~--v~qly 507 (534)
.+.|.+++++ + .-+.||-++ ||||+..+|.|+|+.+++.|+. |-+.|||-. |+..++|.. +..||
T Consensus 91 pt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTnGirlA~~~~~~~~l~~ag~~tvY 170 (475)
T COG1964 91 PTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTNGIRLAFDPEYVKKLREAGVNTVY 170 (475)
T ss_pred CCHHHHHHHHHHHHhcCCCCCceeEecCCCccchhhHHHHHHHHhhcCccEEEEccCceeeccCHHHHHHHHhcCCcEEE
Confidence 6788888776 2 466899998 9999999999999999999995 999999975 777878875 88999
Q ss_pred EEeeCCCHHHHHhhcCC
Q 038595 508 VSVDAATKDSLKAIDRP 524 (534)
Q Consensus 508 vSlDA~~~e~y~~I~rP 524 (534)
.|.|+.++++|.++..|
T Consensus 171 lsFDG~~e~~~~~~~~e 187 (475)
T COG1964 171 LSFDGVTPKTNWKNHWE 187 (475)
T ss_pred EecCCCCCCchhhHhhh
Confidence 99999999998887444
No 119
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=97.51 E-value=0.00065 Score=73.85 Aligned_cols=70 Identities=16% Similarity=0.199 Sum_probs=57.4
Q ss_pred EEEeec-CCCCCC--ccHHHHHHHHHhc-----CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595 457 CALSLV-GEPIMY--PEINTLVDELHRR-----RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 457 ~alSl~-GEPlLy--p~L~elI~~lk~~-----gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP 524 (534)
-.|.+. |+|++. ++|.++++.+++. +..+.+.||... ++.++.|.. ++.+.|+|++.+++.++.++|+
T Consensus 105 ~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~ 184 (453)
T PRK13347 105 SQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRI 184 (453)
T ss_pred EEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC
Confidence 345555 999985 5999999999874 345778899864 778877775 8999999999999999999997
Q ss_pred CC
Q 038595 525 LF 526 (534)
Q Consensus 525 ~~ 526 (534)
..
T Consensus 185 ~~ 186 (453)
T PRK13347 185 QP 186 (453)
T ss_pred CC
Confidence 53
No 120
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=97.37 E-value=0.0011 Score=69.58 Aligned_cols=69 Identities=16% Similarity=0.142 Sum_probs=55.2
Q ss_pred EEeec-CCCCCC-c-cHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 458 ALSLV-GEPIMY-P-EINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 458 alSl~-GEPlLy-p-~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
+|.+. |+|++- | ++.++++.+++. +..+.+.+|... ++.++.|.. ++.+.|.|++.+++..+.+.|++.
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~~~ 132 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRIHS 132 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence 34444 899864 4 689999988864 456889999864 788887775 899999999999999999999753
No 121
>PRK08508 biotin synthase; Provisional
Probab=97.35 E-value=0.00076 Score=68.93 Aligned_cols=60 Identities=15% Similarity=0.238 Sum_probs=46.1
Q ss_pred ccHHHHHHHHHhcCCcEEE-EcCCCC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595 469 PEINTLVDELHRRRISTFL-VTNAQF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWER 532 (534)
Q Consensus 469 p~L~elI~~lk~~gi~~~L-vTNGtl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~ 532 (534)
.++.++++.+|+.+..+.+ .+||.+ ++.+++|.+ ++.+++.+++. ++.|.+++.. .-|+.
T Consensus 75 e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~lEt~-~~~~~~i~~~---~~~~~ 138 (279)
T PRK08508 75 EYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLETS-KEFFPKICTT---HTWEE 138 (279)
T ss_pred HHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcccccch-HHHhcCCCCC---CCHHH
Confidence 4678888999987655554 588887 889999975 89999999995 6788888753 34654
No 122
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=97.30 E-value=0.0017 Score=70.70 Aligned_cols=115 Identities=18% Similarity=0.291 Sum_probs=77.0
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (534)
|.-|+++|.||-.+.+. .+..| ...+|+.|++++..++ +.+.|+ ..|.|.|
T Consensus 203 sRGCp~~C~FC~~~~~~-~g~~~--r~rs~e~V~~Ei~~~~----~~~~~~----~~i~f~D------------------ 253 (472)
T TIGR03471 203 GRGCPSKCTFCLWPQTV-GGHRY--RTRSAESVIEEVKYAL----ENFPEV----REFFFDD------------------ 253 (472)
T ss_pred cCCCCCCCCCCCCCccC-CCCce--EeCCHHHHHHHHHHHH----HhcCCC----cEEEEeC------------------
Confidence 55699999999654321 12334 4568999999886543 223232 2222211
Q ss_pred CCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC--CceEEEEe
Q 038595 435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP--VTQLYVSV 510 (534)
Q Consensus 435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~--v~qlyvSl 510 (534)
+-++.. +++.+|++.+++.|++....+...+ ++.++.|.. +..+.+.+
T Consensus 254 ----------------------------d~f~~~~~~~~~l~~~l~~~~i~~~~~~~~~~~~e~l~~l~~aG~~~v~iGi 305 (472)
T TIGR03471 254 ----------------------------DTFTDDKPRAEEIARKLGPLGVTWSCNARANVDYETLKVMKENGLRLLLVGY 305 (472)
T ss_pred ----------------------------CCCCCCHHHHHHHHHHHhhcCceEEEEecCCCCHHHHHHHHHcCCCEEEEcC
Confidence 222232 4788899999988887665554444 777777765 78999999
Q ss_pred eCCCHHHHHhhcCCCC
Q 038595 511 DAATKDSLKAIDRPLF 526 (534)
Q Consensus 511 DA~~~e~y~~I~rP~~ 526 (534)
++.+++.+++++++..
T Consensus 306 ES~s~~~L~~~~K~~~ 321 (472)
T TIGR03471 306 ESGDQQILKNIKKGLT 321 (472)
T ss_pred CCCCHHHHHHhcCCCC
Confidence 9999999999998754
No 123
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=97.27 E-value=0.0016 Score=70.43 Aligned_cols=66 Identities=27% Similarity=0.405 Sum_probs=53.7
Q ss_pred ecCCCCCCc--cHHHHHHHHHhc-C-----CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 461 LVGEPIMYP--EINTLVDELHRR-R-----ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 461 l~GEPlLyp--~L~elI~~lk~~-g-----i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
+.|+|++.+ +|.+|++.+++. + +.+.+.||... ++.++.|.. +++|.|.|++.+.+..+.+.|+..
T Consensus 98 GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~~ 175 (430)
T PRK08208 98 GGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQK 175 (430)
T ss_pred cCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCCC
Confidence 459999974 788999888764 3 34778899764 777877775 899999999999999999999753
No 124
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=97.26 E-value=0.0055 Score=61.19 Aligned_cols=118 Identities=18% Similarity=0.099 Sum_probs=86.2
Q ss_pred CcEEEEEECccc--hHHHHHHHHHHHHhhCCCceEEECCCCCCccC-----c----------CCCCeEEEEeccCCCCCC
Q 038595 68 NKGKLFFISQTG--TSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-----L----------SKEALVLIVASSWEDGKP 130 (534)
Q Consensus 68 ~kVlI~YgSqTG--tTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d-----L----------~~~~lvIfv~STYg~G~p 130 (534)
.+|+++.||.-- ++..+|+.+.+.+.+.|++++++|+.+++.-+ . ...+.+||++|-|+ +.+
T Consensus 27 ~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn-~si 105 (219)
T TIGR02690 27 PRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERH-GAI 105 (219)
T ss_pred CEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCccc-cCc
Confidence 369999998743 45679999999998789999999998765321 1 13579999999999 666
Q ss_pred chHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595 131 PEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV 193 (534)
Q Consensus 131 Pdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV 193 (534)
|...+..++||.....| ...+.++.++|+|..-...+ -.+...+...|..+|+..+
T Consensus 106 pg~LKNaiDwls~~~~~----~~~~~~KpvaivgaSgg~~g---~ra~~~LR~vl~~l~a~v~ 161 (219)
T TIGR02690 106 TGSQKDQIDWIPLSVGP----VRPTQGKTLAVMQVSGGSQS---FNAVNILRRLGRWMRMPTI 161 (219)
T ss_pred CHHHHHHHHhcccCccc----ccccCCCcEEEEEeCCcHhH---HHHHHHHHHHHHHCCCccc
Confidence 77789999998653211 13689999999986311111 3467778888999998544
No 125
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=97.23 E-value=0.0023 Score=67.72 Aligned_cols=65 Identities=17% Similarity=0.310 Sum_probs=53.3
Q ss_pred cCCCCCC--ccHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIMY--PEINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlLy--p~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|.|++. +.|.++++.+++. ++ .+.+.+|... ++.++.|.. ++++.+.|++.+++.++.++|+..
T Consensus 67 GGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s 142 (375)
T PRK05628 67 GGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHT 142 (375)
T ss_pred CCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence 4999985 4899999999874 44 3677788664 677777764 899999999999999999999854
No 126
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=97.22 E-value=0.00086 Score=72.76 Aligned_cols=125 Identities=19% Similarity=0.309 Sum_probs=83.3
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeee--ccccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLL--DFFYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~--~~~~~~~~~~~~~~~~~ 432 (534)
+.-|+++|.||-.+... | . +...+|+.|++++..+ .. .| +.+|+|+ |...||. |.
T Consensus 146 srGCp~~CsFC~ip~~~--G-~--~rsr~~e~Vv~Ei~~l-----~~-~g----~kei~l~~~d~~~yg~-----d~--- 202 (440)
T PRK14862 146 SEGCNHRCTFCIIPSMR--G-D--LVSRPIGDVLREAERL-----VK-AG----VKELLVISQDTSAYGV-----DV--- 202 (440)
T ss_pred ccCCCCCCccCCccccc--C-C--ccccCHHHHHHHHHHH-----HH-CC----CceEEEEecChhhhcc-----cc---
Confidence 34599999999876443 2 2 3468899999988543 22 13 5678886 6555552 00
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEE---EEcCCCCHHHHhhcCC--C-ceE
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTF---LVTNAQFPDKIKLLKP--V-TQL 506 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~---LvTNGtlpe~l~~L~~--v-~ql 506 (534)
.+-.--+.|+|+ .+++.+|++.+++.|+.+. +..|+..++.++.+.. + ..+
T Consensus 203 ----------------------~~~~~~~~~~~~-~~~~~~Ll~~l~~~~~~~r~~~~~p~~~~dell~~m~~g~~~~~l 259 (440)
T PRK14862 203 ----------------------KYRTGFWNGRPV-KTRMTDLCEALGELGAWVRLHYVYPYPHVDEVIPLMAEGKILPYL 259 (440)
T ss_pred ----------------------ccccccccccch-hhHHHHHHHHHHhcCCEEEEecCCCCcCCHHHHHHHhcCCCcccc
Confidence 000001347888 7899999999999887433 3445544666666553 2 267
Q ss_pred EEEeeCCCHHHHHhhcCCC
Q 038595 507 YVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 507 yvSlDA~~~e~y~~I~rP~ 525 (534)
.|++++.+.+.+++++|+.
T Consensus 260 ~IglESgs~~vLk~m~r~~ 278 (440)
T PRK14862 260 DIPFQHASPRVLKRMKRPA 278 (440)
T ss_pred ccccccCCHHHHHhcCCCC
Confidence 8899999999999999974
No 127
>PRK13556 azoreductase; Provisional
Probab=97.15 E-value=0.015 Score=56.53 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=89.4
Q ss_pred cEEEEEECcc----chHHHHHHHHHHHHhhC--CCceEEECCCCCCc-----c-----------------------C---
Q 038595 69 KGKLFFISQT----GTSKTLAKRLHALLTSN--DLLFDLVDPQTYEP-----E-----------------------D--- 111 (534)
Q Consensus 69 kVlI~YgSqT----GtTE~lAe~La~~L~~~--Gl~v~V~dL~d~d~-----~-----------------------d--- 111 (534)
+++|+.+|-- ++|.++++.+.+.+.+. |.+|+++||.+.++ + +
T Consensus 3 kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T PRK13556 3 KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVADK 82 (208)
T ss_pred eEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHHHH
Confidence 5899999964 78899999999999864 78999999874321 0 0
Q ss_pred ----cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccc----cCCCCCeEEEEEe-cCcchH----HHHHHHH
Q 038595 112 ----LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGS----LLLSNCKFAVFGV-GSKSYE----KTFNMVA 178 (534)
Q Consensus 112 ----L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~----~~Lkgl~yAVFGL-GDs~Y~----e~Fc~aA 178 (534)
+...+.+||++|-|+ +.+|.-.+.+++++.....=|+.+. ..|+++++.|+.. |. .|. +.+..+.
T Consensus 83 ~~~~l~~AD~iVi~~P~yn-~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg-~~~~~~~~~~~~~~ 160 (208)
T PRK13556 83 YLNQFLEADKVVFAFPLWN-FTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGG-VYSEGPAAEVEMAV 160 (208)
T ss_pred HHHHHHHCCEEEEeccccc-cCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCC-CCCCCCchhhhccH
Confidence 123579999999999 5567778888888865432232222 3588999888865 32 231 2455566
Q ss_pred HHHHHHHHHcCCceecceEEee
Q 038595 179 KDLSKKMRELGAGEVLPVVEGD 200 (534)
Q Consensus 179 K~LDk~L~kLGA~rV~plg~gD 200 (534)
..+...|.-+|++.+- ...+.
T Consensus 161 ~~l~~il~~~G~~~~~-~v~~~ 181 (208)
T PRK13556 161 KYVASMMGFFGVTNME-TVVIE 181 (208)
T ss_pred HHHHHHHHhcCCCcee-EEEEe
Confidence 7788899989987653 34443
No 128
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=97.11 E-value=0.0013 Score=68.86 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=76.0
Q ss_pred eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595 351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ 430 (534)
Q Consensus 351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~ 430 (534)
-+..|..|+++|.||-....+-....+ . -+|++|++.+... ..+ |
T Consensus 42 ~i~~T~~C~~~C~FC~~~~~~~~~~~y--~-ls~eeI~e~~~~~-----~~~-G-------------------------- 86 (343)
T TIGR03551 42 NINFTNVCYGGCGFCAFRKRKGDADAY--L-LSLEEIAERAAEA-----WKA-G-------------------------- 86 (343)
T ss_pred ccccccccccCCccCCCccCCCCCCcc--c-CCHHHHHHHHHHH-----HHC-C--------------------------
Confidence 455678899999999764322111122 2 4899999987542 222 3
Q ss_pred CCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhc--CCcEEEE----------cCCCC-HHH
Q 038595 431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRR--RISTFLV----------TNAQF-PDK 496 (534)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~--gi~~~Lv----------TNGtl-pe~ 496 (534)
++++.|.+.-+|.+.. .+.++++.+|+. ++.+... ++|.+ ++.
T Consensus 87 -----------------------~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~ 143 (343)
T TIGR03551 87 -----------------------ATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEA 143 (343)
T ss_pred -----------------------CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHH
Confidence 2445555333676654 679999999987 4544332 56765 788
Q ss_pred HhhcCC--CceEE-EEeeCCCHHHHHhhcC
Q 038595 497 IKLLKP--VTQLY-VSVDAATKDSLKAIDR 523 (534)
Q Consensus 497 l~~L~~--v~qly-vSlDA~~~e~y~~I~r 523 (534)
+++|.+ ++.++ .+.+..+++.+++|+.
T Consensus 144 l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~ 173 (343)
T TIGR03551 144 LKRLKEAGLDSMPGTAAEILDDEVRKVICP 173 (343)
T ss_pred HHHHHHhCcccccCcchhhcCHHHHHhcCC
Confidence 888886 77776 4668888999999985
No 129
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=97.11 E-value=0.0021 Score=67.91 Aligned_cols=65 Identities=23% Similarity=0.360 Sum_probs=53.8
Q ss_pred cCCCCC--CccHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIM--YPEINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlL--yp~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|+|++ .+.|.++++.+++. ++ .+.+.+|... ++.++.|.. ++.+.|++++.+++.++.+.|+..
T Consensus 59 GGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~ 134 (377)
T PRK08599 59 GGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN 134 (377)
T ss_pred CCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence 499997 35999999999985 43 4778899753 777877765 899999999999999999999754
No 130
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=97.09 E-value=0.002 Score=66.72 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=51.9
Q ss_pred cCCCCCC-ccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595 462 VGEPIMY-PEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLFGDFWER 532 (534)
Q Consensus 462 ~GEPlLy-p~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~ 532 (534)
+|+||=+ |.|-+.++++.+. +++.-.||+-+ +|.++-|.. ||.---.+.-.|.+--.+... .+++|+=
T Consensus 173 gg~Ptp~lp~Ile~l~~~~~~-iPvvwNSnmY~s~E~l~lL~gvVDiyL~DfKYgNdeca~kySk--vp~Y~eV 243 (335)
T COG1313 173 GGDPTPHLPFILEALRYASEN-IPVVWNSNMYMSEETLKLLDGVVDIYLPDFKYGNDECAEKYSK--VPNYWEV 243 (335)
T ss_pred CCCCCCchHHHHHHHHHHhcC-CCEEEecCCccCHHHHHHhhccceeeecccccCCHHHHHHhhc--CCchHHH
Confidence 3999987 6788888887776 99999999988 777776666 454444577788887777776 5789973
No 131
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=97.09 E-value=0.0036 Score=65.99 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=51.8
Q ss_pred cCCCCC-Cc-cHHHHHHHHHhcC----CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIM-YP-EINTLVDELHRRR----ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlL-yp-~L~elI~~lk~~g----i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|+|++ .+ .+.++++.+++.+ +.+.+.||... ++.++.|.. ++++.|.|++.+.+.++.+.|++.
T Consensus 59 GGtps~l~~~~l~~L~~~i~~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R~~~ 133 (374)
T PRK05799 59 GGTPTYLSLEALEILKETIKKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGRIHT 133 (374)
T ss_pred CCcccCCCHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCCCCC
Confidence 389996 44 5667888887654 35778899864 788887775 899999999999999999999753
No 132
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=97.07 E-value=0.0017 Score=67.77 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=73.0
Q ss_pred ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595 352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI 431 (534)
Q Consensus 352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (534)
+..|..|+++|.||-...++ +.. ....-+|++|++.+.++ +.+ |
T Consensus 45 i~~s~~C~~~C~fC~~~~~~--~~~-~~~~ls~eei~~~~~~~-----~~~-G--------------------------- 88 (340)
T TIGR03699 45 INYTNICVVGCKFCAFYRAP--GHP-EGYVLSVEEILQKIEEL-----VAY-G--------------------------- 88 (340)
T ss_pred cccchhhccCCccCCcccCC--CCc-cccCCCHHHHHHHHHHH-----HHc-C---------------------------
Confidence 33478999999999633222 111 01235888999877543 222 3
Q ss_pred CCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhcCCcEE------------EEcCCCC-HHHH
Q 038595 432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRRRISTF------------LVTNAQF-PDKI 497 (534)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~gi~~~------------LvTNGtl-pe~l 497 (534)
++.+.|++..+|.+.+ ++.++++.+++.+..+. ..|||.+ ++.+
T Consensus 89 ----------------------~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l 146 (340)
T TIGR03699 89 ----------------------GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVL 146 (340)
T ss_pred ----------------------CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHH
Confidence 2445666555777655 57789999998753332 2378887 7888
Q ss_pred hhcCC--CceEE-EEeeCCCHHHHHhhcC
Q 038595 498 KLLKP--VTQLY-VSVDAATKDSLKAIDR 523 (534)
Q Consensus 498 ~~L~~--v~qly-vSlDA~~~e~y~~I~r 523 (534)
+.|.. ++.+. ...+..+++.++.+.+
T Consensus 147 ~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~ 175 (340)
T TIGR03699 147 ERLKEAGLDSIPGGGAEILSDRVRKIISP 175 (340)
T ss_pred HHHHHcCCCcCCCCcccccCHHHHHhhCC
Confidence 88886 66554 3456678888888874
No 133
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=97.07 E-value=0.0023 Score=69.86 Aligned_cols=116 Identities=17% Similarity=0.324 Sum_probs=77.2
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND 435 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (534)
.-|+++|.||-.+... | +....+|++|++++..+ ++ +| +.+|+|+|-
T Consensus 163 rGC~~~CsfC~~p~~~--G---~~rsr~~e~Il~ei~~l----~~--~G----~keI~l~g~------------------ 209 (459)
T PRK14338 163 YGCNMSCSYCVIPLRR--G---RERSRPLAEIVEEVRRI----AA--RG----AKEITLLGQ------------------ 209 (459)
T ss_pred cCCCCCCCcCCeeccC--C---CCccCCHHHHHHHHHHH----HH--CC----CeEEEEeee------------------
Confidence 4699999999875432 1 12456889999887643 22 23 356666331
Q ss_pred CCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHhc-CC-cEEE-EcCCCC--HHHHhhcCC----Cce
Q 038595 436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHRR-RI-STFL-VTNAQF--PDKIKLLKP----VTQ 505 (534)
Q Consensus 436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~~-gi-~~~L-vTNGtl--pe~l~~L~~----v~q 505 (534)
.+...|+|+. .+.|.+|++.+++. |+ .+.+ .+|... ++.++.|.. +..
T Consensus 210 ----------------------~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~~~~~~ 267 (459)
T PRK14338 210 ----------------------IVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLPKCCPH 267 (459)
T ss_pred ----------------------cCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhcccccccc
Confidence 1122477763 56799999999985 65 3443 446543 455555543 578
Q ss_pred EEEEeeCCCHHHHHhhcCCCC
Q 038595 506 LYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 506 lyvSlDA~~~e~y~~I~rP~~ 526 (534)
+.+++++.+.+.+++++|+..
T Consensus 268 v~lglQSgsd~vLk~m~R~~t 288 (459)
T PRK14338 268 INLPVQAGDDEVLKRMRRGYT 288 (459)
T ss_pred eecCcccCCHHHHHhccCCCC
Confidence 999999999999999999854
No 134
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.07 E-value=0.0028 Score=61.70 Aligned_cols=116 Identities=14% Similarity=0.000 Sum_probs=80.7
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc------------------C--------cCCCCeEEEEec
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE------------------D--------LSKEALVLIVAS 123 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~------------------d--------L~~~~lvIfv~S 123 (534)
|.+.|-| +|||+.+|+.+++.+++.|.+++++.+.+.+.. | +.+.+.+||++|
T Consensus 6 I~gs~r~-~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gsP 84 (207)
T COG0655 6 INGSPRS-NGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGSP 84 (207)
T ss_pred EEecCCC-CCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeCC
Confidence 4555666 899999999999999999999999999876311 1 234689999999
Q ss_pred cCCCCCCchHHHHHHHH-HHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595 124 SWEDGKPPEAAKFFMNW-IDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV 193 (534)
Q Consensus 124 TYg~G~pPdna~~Fle~-L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV 193 (534)
||- |..+..++.|++. +.-.. ....|+++..++|..+-+.-+ ........+...+...|...+
T Consensus 85 vy~-g~vsa~~K~fiDR~~~~~~-----~~~~l~~k~~~~~~~~~~~~g-~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 85 VYF-GNVSAQMKAFIDRSTGPLW-----APGALRGKVGAAFVSGGSRGG-GQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred eec-CCchHHHHHHHhhcchhhc-----ccchhccccceEEEEeccCCC-ChHHHHHHHHHHHHHcCCeEe
Confidence 999 7778889999888 43221 124688888888876654332 111344555555555554433
No 135
>PRK06267 hypothetical protein; Provisional
Probab=96.94 E-value=0.0038 Score=65.94 Aligned_cols=125 Identities=16% Similarity=0.116 Sum_probs=77.0
Q ss_pred eccCCeeeeeccccccc--ccccccccCCCC-CCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccc
Q 038595 343 GIESHRCMEATPSLACA--NKCVFCWRHHTN-PVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFY 419 (534)
Q Consensus 343 gi~s~~c~~~~p~~~C~--~~C~~C~r~~~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~ 419 (534)
|=.-+-|.-+..|..|+ ++|.||-....+ +.... .....+|++|++++.. ++.+ |+.
T Consensus 22 G~~v~l~~~l~~S~~C~l~~~C~FC~~s~~~~~i~~~-~~~~~s~eeI~eea~~-----~~~~-Gv~------------- 81 (350)
T PRK06267 22 GNIVSLERALFLGWYCNLKGPCKFCYMSTQKDKIKDP-LKARRRVESILAEAIL-----MKRI-GWK------------- 81 (350)
T ss_pred CCeEEEEEeeeecCCCcCCCCCcCCCCcccCCccCcc-ccccCCHHHHHHHHHH-----HHHc-CCC-------------
Confidence 33334455666788999 999999554322 22111 1234589999998843 2332 322
Q ss_pred ccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCcEEEEcCCCCHHHHh
Q 038595 420 FGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RISTFLVTNAQFPDKIK 498 (534)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~~~LvTNGtlpe~l~ 498 (534)
.+.|+ .|+++...+|.++++.+++. +..+.+-.....++.+.
T Consensus 82 ------------------------------------~~~ls-gG~~~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~ 124 (350)
T PRK06267 82 ------------------------------------LEFIS-GGYGYTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNIN 124 (350)
T ss_pred ------------------------------------EEEEe-cCCCCCHHHHHHHHHHHHHhhCCceEeecccCCHHHHh
Confidence 12122 58886667899999999876 44455444444454443
Q ss_pred hcCCCceEEEEeeCCCHHHHHhhcCCC
Q 038595 499 LLKPVTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 499 ~L~~v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
.+ .+..++..+++.+++.|.+|+...
T Consensus 125 ~~-~l~Gv~g~~ET~~~~~~~~i~~~~ 150 (350)
T PRK06267 125 LN-EIEGVVGAVETVNPKLHREICPGK 150 (350)
T ss_pred hc-cccCceeeeecCCHHHHHhhCCCC
Confidence 22 234567899999999999999653
No 136
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=96.93 E-value=0.0058 Score=67.53 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=52.1
Q ss_pred EEeec-CCCCC--CccHHHHHHHHHhc--C---CcEEEEcCC---CC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595 458 ALSLV-GEPIM--YPEINTLVDELHRR--R---ISTFLVTNA---QF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 458 alSl~-GEPlL--yp~L~elI~~lk~~--g---i~~~LvTNG---tl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r 523 (534)
+|.+. |+|++ .++|.++++.+++. + +.-+.+++| ++ ++.++.|.. ++.+.|.+++.+.++++.|.|
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR 300 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR 300 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence 44444 99998 45899999999864 3 333444444 23 778887775 899999999999999999999
Q ss_pred CCC
Q 038595 524 PLF 526 (534)
Q Consensus 524 P~~ 526 (534)
++.
T Consensus 301 ~ht 303 (488)
T PRK08207 301 HHT 303 (488)
T ss_pred CCC
Confidence 753
No 137
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=96.90 E-value=0.0043 Score=65.80 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=76.7
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (534)
-.-|+..|.||--+...... --...||++.+.... +.+...|+
T Consensus 108 QvGC~~~C~FCaTg~~G~~R------NLs~~EIv~Qv~~~~----~~~~~~~~--------------------------- 150 (349)
T COG0820 108 QVGCPVGCTFCATGQGGLNR------NLSAGEIVEQVLLAA----KALGEDFG--------------------------- 150 (349)
T ss_pred CCCcCCCCCeecccccccee------ccCHHHHHHHHHHHH----HhcCcccc---------------------------
Confidence 34599999999876433221 135678999887653 22222222
Q ss_pred CCCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHh-c--CCc---EEEEcCCCCHHHHhhcCC-C-ce
Q 038595 435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHR-R--RIS---TFLVTNAQFPDKIKLLKP-V-TQ 505 (534)
Q Consensus 435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~-~--gi~---~~LvTNGtlpe~l~~L~~-v-~q 505 (534)
-.+.++.+.++|||++ |.....+++.+.. . |++ +.+-|+|-.|...+-... + -.
T Consensus 151 -----------------~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~ 213 (349)
T COG0820 151 -----------------RRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVA 213 (349)
T ss_pred -----------------ceeeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCCCchhHHHHHhhcCCeE
Confidence 1468899999999999 5788888888873 3 443 689999976655432211 2 45
Q ss_pred EEEEeeCCCHHHHHhhc
Q 038595 506 LYVSVDAATKDSLKAID 522 (534)
Q Consensus 506 lyvSlDA~~~e~y~~I~ 522 (534)
|-|||.|+|.+.=+.|-
T Consensus 214 LAiSLHa~nd~lR~~L~ 230 (349)
T COG0820 214 LAISLHAPNDELRDQLM 230 (349)
T ss_pred EEEecCCCCHHHHhhhh
Confidence 89999999998755554
No 138
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=96.90 E-value=0.0038 Score=67.73 Aligned_cols=118 Identities=19% Similarity=0.249 Sum_probs=78.0
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND 435 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (534)
.-|+++|.||-.+... |.. ...++++|++++..+ .. .| +.+|+|+|-
T Consensus 146 rGC~~~CsfC~~p~~~--g~~---~sr~~e~Iv~Ei~~l-----~~-~G----~keI~l~g~------------------ 192 (440)
T PRK14334 146 RGCNHHCTYCIVPTTR--GPE---VSRHPDLILRELELL-----KA-AG----VQEVTLLGQ------------------ 192 (440)
T ss_pred cCCCCCCcCCCcchhc--CCC---ccCCHHHHHHHHHHH-----HH-CC----CeEEEEEec------------------
Confidence 4699999999876432 222 235788898887543 22 13 456777330
Q ss_pred CCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCc-EEEEc-CCCC--HHHHhhcCC----CceEE
Q 038595 436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRIS-TFLVT-NAQF--PDKIKLLKP----VTQLY 507 (534)
Q Consensus 436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~-~~LvT-NGtl--pe~l~~L~~----v~qly 507 (534)
++. +..|+|..++.+.+|++.+++.|+. +.+.+ |... ++.++.|.. +.++.
T Consensus 193 --------------------~~~-~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~g~~~l~ 251 (440)
T PRK14334 193 --------------------NVN-SYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAETPAVCEYIH 251 (440)
T ss_pred --------------------ccc-ccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHhcCcCCCeEE
Confidence 000 1234554567888999999887764 44433 4433 666666643 67899
Q ss_pred EEeeCCCHHHHHhhcCCCCC
Q 038595 508 VSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 508 vSlDA~~~e~y~~I~rP~~~ 527 (534)
++|++.+++.+++++|+...
T Consensus 252 igvQSgs~~vLk~m~R~~~~ 271 (440)
T PRK14334 252 LPVQSGSDRVLRRMAREYRR 271 (440)
T ss_pred eccccCCHHHHHHhCCCCCH
Confidence 99999999999999998654
No 139
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.87 E-value=0.007 Score=64.26 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=55.0
Q ss_pred cCCCCCCc--cHHHHHHHHHhc-CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIMYP--EINTLVDELHRR-RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlLyp--~L~elI~~lk~~-gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|.|++-| .|.++++.+++. ...+.+.+|... ++.++.|.. ++.+.|.|++.+.+.++++.|++.
T Consensus 66 GGTPs~l~~~~l~~ll~~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~ 137 (370)
T PRK06294 66 GGTPSLVPPALIQDILKTLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS 137 (370)
T ss_pred CCccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence 49999976 899999999876 445778999764 677877775 899999999999999999999763
No 140
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=96.81 E-value=0.0051 Score=64.81 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=75.9
Q ss_pred eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595 349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID 428 (534)
Q Consensus 349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
|.-+..|..|+++|.||--...+.....+ .+ +|++|++.+.+. .. .|
T Consensus 49 ~~~in~Tn~C~~~C~FCa~~~~~~~~~~y--~l-~~eeI~~~a~~~-----~~-~G------------------------ 95 (351)
T TIGR03700 49 NRHLNYTNICVNGCAFCAFQRERGEPGAY--AM-SLEEIVARVKEA-----YA-PG------------------------ 95 (351)
T ss_pred cCCcccccccccCCccCceeCCCCCcccC--CC-CHHHHHHHHHHH-----HH-CC------------------------
Confidence 34456789999999999876543222222 23 889999977543 11 12
Q ss_pred cCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCC--ccHHHHHHHHHhcC--CcEEEEc----------CCCC-
Q 038595 429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY--PEINTLVDELHRRR--ISTFLVT----------NAQF- 493 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy--p~L~elI~~lk~~g--i~~~LvT----------NGtl- 493 (534)
++.+.|. +|+..-+ .++.++++.+|+.. +.+...| .|..
T Consensus 96 -------------------------~~~v~l~-~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~ 149 (351)
T TIGR03700 96 -------------------------ATEVHIV-GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPT 149 (351)
T ss_pred -------------------------CcEEEEe-cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCH
Confidence 2334444 4554333 37889999999874 4443322 4554
Q ss_pred HHHHhhcCC--CceEE-EEeeCCCHHHHHhhcCC
Q 038595 494 PDKIKLLKP--VTQLY-VSVDAATKDSLKAIDRP 524 (534)
Q Consensus 494 pe~l~~L~~--v~qly-vSlDA~~~e~y~~I~rP 524 (534)
++.+++|.. ++.+. ..+...+++.+++|+..
T Consensus 150 ~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~ 183 (351)
T TIGR03700 150 EEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPE 183 (351)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCC
Confidence 566888885 77776 68888899999999964
No 141
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=96.74 E-value=0.0089 Score=65.83 Aligned_cols=112 Identities=21% Similarity=0.356 Sum_probs=76.0
Q ss_pred ccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCC
Q 038595 354 PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 354 p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (534)
-|.-|+++|.||..+.. ... +...+|+.|++++..+++ .+ |+. .|+|
T Consensus 199 tSRGCp~~C~FC~~~~~---~~~--~R~rs~e~Vv~Ei~~l~~----~~-gv~----~~~~------------------- 245 (497)
T TIGR02026 199 FARGCPFTCNFCSQWKF---WRR--YRHRDPKKFVDEIEWLVR----TH-GVG----FFIL------------------- 245 (497)
T ss_pred ccCCCCCCCCCCCCCCC---Cce--eecCCHHHHHHHHHHHHH----Hc-CCC----EEEE-------------------
Confidence 35569999999976432 223 456799999998865433 22 331 1222
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCCCc-cHHHHHHHHHhcC-CcEEE--EcCCC----CHHHHhhcCC--C
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYP-EINTLVDELHRRR-ISTFL--VTNAQ----FPDKIKLLKP--V 503 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp-~L~elI~~lk~~g-i~~~L--vTNGt----lpe~l~~L~~--v 503 (534)
...+|++++ ++.+|++.+.++| +.+.. .|... -++.++.+.. +
T Consensus 246 ---------------------------~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 246 ---------------------------ADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred ---------------------------EecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 125677765 7889999998876 55443 33332 2566766654 8
Q ss_pred ceEEEEeeCCCHHHHHhhcCCC
Q 038595 504 TQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
..+.+.+++.+++.++.+++..
T Consensus 299 ~~v~iGiES~~~~~L~~~~K~~ 320 (497)
T TIGR02026 299 VHISLGTEAAAQATLDHFRKGT 320 (497)
T ss_pred cEEEEccccCCHHHHHHhcCCC
Confidence 8999999999999999999864
No 142
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=96.62 E-value=0.0085 Score=64.65 Aligned_cols=115 Identities=23% Similarity=0.342 Sum_probs=75.3
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeee--ccccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLL--DFFYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~--~~~~~~~~~~~~~~~~~ 432 (534)
+.-|+++|.||..+... | . ....+|++|++++..+.. . | +.+|+|+ |++
T Consensus 142 srGC~~~CsfC~~~~~~--G-~--~r~r~~e~Vv~Ei~~l~~----~--g----~k~i~~~~~d~~-------------- 192 (430)
T TIGR01125 142 AEGCNRRCAFCIIPSIR--G-K--LRSRPIEEILKEAERLVD----Q--G----VKEIILIAQDTT-------------- 192 (430)
T ss_pred ccCCCCCCCcCCeeccc--C-C--ceecCHHHHHHHHHHHHH----C--C----CcEEEEEeECCC--------------
Confidence 44699999999875432 2 2 345789999998865432 1 3 3567764 222
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCC-ccHHHHHHHHHhcC-Cc-EEE-EcCC--CCHHHHhhcCC----
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY-PEINTLVDELHRRR-IS-TFL-VTNA--QFPDKIKLLKP---- 502 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy-p~L~elI~~lk~~g-i~-~~L-vTNG--tlpe~l~~L~~---- 502 (534)
..|.|+.. +++.+|++.+++.+ +. +.+ .++. ..++.++.+..
T Consensus 193 ----------------------------~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~~~ 244 (430)
T TIGR01125 193 ----------------------------AYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGPKV 244 (430)
T ss_pred ----------------------------ccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCCcc
Confidence 23555543 57889999998875 43 221 2222 22566665543
Q ss_pred CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 503 VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 503 v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
...+.++|++.+++.++.++|+..
T Consensus 245 ~~~l~iglES~s~~vLk~m~k~~~ 268 (430)
T TIGR01125 245 LPYLDIPLQHASDRILKLMRRPGS 268 (430)
T ss_pred cCceEeCCCCCCHHHHhhCCCCCC
Confidence 467999999999999999999753
No 143
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=96.52 E-value=0.0016 Score=66.80 Aligned_cols=68 Identities=18% Similarity=0.307 Sum_probs=52.9
Q ss_pred CCCCCCccHHHHHHHHHhc-CCc-EEEEcCCCCH-HHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhhhc
Q 038595 463 GEPIMYPEINTLVDELHRR-RIS-TFLVTNAQFP-DKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWERF 533 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~-gi~-~~LvTNGtlp-e~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~~ 533 (534)
|||++.+++.+.+..+... |++ +.+.|||... ..+-+|.. ++.+.+|+|...++.|.++.| +.-|.++
T Consensus 68 geptIr~di~~i~~g~~~l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~r---r~g~v~V 140 (323)
T KOG2876|consen 68 GEPLIRQDIVPIVAGLSSLPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTR---RKGFVKV 140 (323)
T ss_pred CCCcccccccchhhhhhcccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhh---hccHHHH
Confidence 9999999999999988876 765 7799999832 22333333 788999999999999999998 3345543
No 144
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=96.50 E-value=0.0092 Score=64.26 Aligned_cols=115 Identities=22% Similarity=0.362 Sum_probs=74.5
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 433 (534)
.-|+++|.||..+... | ++...+|++|++++..+. . .| +.+|+|.| |+.+
T Consensus 147 rGC~~~CsfC~~~~~~--g---~~r~r~~e~Vv~Ei~~l~----~--~g----~~ei~l~~~~~~~y------------- 198 (429)
T TIGR00089 147 EGCDKFCTYCIVPYAR--G---RERSRPPEDILEEVKELV----S--KG----VKEIVLLGQNVGAY------------- 198 (429)
T ss_pred hCcCCCCCcCceeccc--C---CCCCCCHHHHHHHHHHHH----H--CC----CceEEEEeeccccc-------------
Confidence 3599999999876433 2 345679999999886432 2 23 45677743 2221
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----C
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP----V 503 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~----v 503 (534)
|+++- .+.+.+|++.+++. |+. +.+.+ |.. .++.++.|.. +
T Consensus 199 -----------------------------g~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~~~~~ 249 (429)
T TIGR00089 199 -----------------------------GKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAENPKVC 249 (429)
T ss_pred -----------------------------cCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhCCCcc
Confidence 33322 14588888888776 554 44433 332 2555555542 5
Q ss_pred ceEEEEeeCCCHHHHHhhcCCCCC
Q 038595 504 TQLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
..+.+.+++.+++.+++++|+...
T Consensus 250 ~~l~igiES~s~~vLk~m~R~~~~ 273 (429)
T TIGR00089 250 KHLHLPVQSGSDRILKRMNRKYTR 273 (429)
T ss_pred CceeeccccCChHHHHhCCCCCCH
Confidence 789999999999999999998643
No 145
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=96.46 E-value=0.012 Score=60.73 Aligned_cols=114 Identities=13% Similarity=0.175 Sum_probs=74.3
Q ss_pred eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595 351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ 430 (534)
Q Consensus 351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~ 430 (534)
-+.+|..|+++|.||-....+..... ..-+|++|++.+.+. ... |.
T Consensus 8 ~i~~T~~C~~~C~FC~~~~~~~~~~~---~~ls~eeI~~~~~~~-----~~~-G~------------------------- 53 (309)
T TIGR00423 8 NINFTNICVGKCKFCAFRAREKDKDA---YVLSLEEILEKVKEA-----VAK-GA------------------------- 53 (309)
T ss_pred eecCccccccCCccCCCccCCCCCCc---ccCCHHHHHHHHHHH-----HHC-CC-------------------------
Confidence 35678899999999976543321111 235889999887542 111 32
Q ss_pred CCCCCCCcccccccHHHhhhccCCceEEEeecC-CCCCC-ccHHHHHHHHHhcCCcEEEE------------cCCCC-HH
Q 038595 431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIMY-PEINTLVDELHRRRISTFLV------------TNAQF-PD 495 (534)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlLy-p~L~elI~~lk~~gi~~~Lv------------TNGtl-pe 495 (534)
+.+.|. .| .|.+. .++.++++.+|+.+..+.+. ++|.. ++
T Consensus 54 ------------------------~~i~l~-gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e 108 (309)
T TIGR00423 54 ------------------------TEVCIQ-GGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEE 108 (309)
T ss_pred ------------------------CEEEEe-cCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHH
Confidence 234444 24 46554 36899999999875333222 45665 78
Q ss_pred HHhhcCC--CceEE-EEeeCCCHHHHHhhcC
Q 038595 496 KIKLLKP--VTQLY-VSVDAATKDSLKAIDR 523 (534)
Q Consensus 496 ~l~~L~~--v~qly-vSlDA~~~e~y~~I~r 523 (534)
.++.|.+ ++.+. +++...+++.+++++.
T Consensus 109 ~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~ 139 (309)
T TIGR00423 109 VLKRLKKAGLDSMPGTGAEILDDSVRRKICP 139 (309)
T ss_pred HHHHHHHcCCCcCCCCcchhcCHHHHHhhCC
Confidence 8888886 77664 6888899999999974
No 146
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=96.44 E-value=0.022 Score=60.33 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=53.3
Q ss_pred cCCCCCCc--cHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIMYP--EINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlLyp--~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|-|++-+ .|.++++.+++. +..+.+.+|... ++.++.|.. +..|.|.|++.+.+.++.+.|+..
T Consensus 64 GGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~ 137 (353)
T PRK05904 64 GGTPNCLNDQLLDILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHT 137 (353)
T ss_pred CCccccCCHHHHHHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC
Confidence 49999854 789999999875 234788889865 677777764 899999999999999999999753
No 147
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=96.35 E-value=0.029 Score=60.18 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=55.6
Q ss_pred EEeec-CCCCCC-c-cHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 458 ALSLV-GEPIMY-P-EINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 458 alSl~-GEPlLy-p-~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+|.+. |.|++- + .|.++++.+++. ++ -+.+.+|... ++.++.|.. ++.+.|.|++.+.+.++.+.|.+
T Consensus 65 tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h 144 (390)
T PRK06582 65 SIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTH 144 (390)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCC
Confidence 44554 899775 3 788899999875 23 4889999864 788888875 89999999999999999999976
Q ss_pred C
Q 038595 526 F 526 (534)
Q Consensus 526 ~ 526 (534)
.
T Consensus 145 ~ 145 (390)
T PRK06582 145 D 145 (390)
T ss_pred C
Confidence 4
No 148
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=96.30 E-value=0.017 Score=63.59 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=76.4
Q ss_pred eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595 351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ 430 (534)
Q Consensus 351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~ 430 (534)
-+-.|+.|.|+|.||--+..|.. ..+ ..-++++|++++..+ ..+ |
T Consensus 87 pLyiSN~C~n~C~YCgfs~~n~~--i~r-~~Ls~EEI~~ea~~~-----~~~-G-------------------------- 131 (469)
T PRK09613 87 PLYISNYCVNNCVYCGFRRSNKE--IKR-KKLTQEEIREEVKAL-----EDM-G-------------------------- 131 (469)
T ss_pred eccccCCCCCCCccCCCccCCCC--CCc-eECCHHHHHHHHHHH-----HHC-C--------------------------
Confidence 33457899999999988766541 112 245899999998653 221 2
Q ss_pred CCCCCCCcccccccHHHhhhccCCceEEEeecCC-CCCC--ccHHHHHHHHHhc----CCcEEEEcC-CCC-HHHHhhcC
Q 038595 431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIMY--PEINTLVDELHRR----RISTFLVTN-AQF-PDKIKLLK 501 (534)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlLy--p~L~elI~~lk~~----gi~~~LvTN-Gtl-pe~l~~L~ 501 (534)
.+++.|. +|| |.-+ .+|.++|+.+++. |.-..+..| |.+ .+.++.|.
T Consensus 132 -----------------------~~~i~Lv-sGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lk 187 (469)
T PRK09613 132 -----------------------HKRLALV-AGEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLK 187 (469)
T ss_pred -----------------------CCEEEEE-eCCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHH
Confidence 3556664 455 3433 3788899988873 211122333 333 67888888
Q ss_pred C--CceEEEEeeCCCHHHHHhhc
Q 038595 502 P--VTQLYVSVDAATKDSLKAID 522 (534)
Q Consensus 502 ~--v~qlyvSlDA~~~e~y~~I~ 522 (534)
+ ++.+.+-....++++|++++
T Consensus 188 eaGv~~~~l~qETY~~ety~~~h 210 (469)
T PRK09613 188 EAGIGTYQLFQETYHKPTYEKMH 210 (469)
T ss_pred HcCCCEEEeccccCCHHHHHhcC
Confidence 6 89999999999999999987
No 149
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=96.25 E-value=0.043 Score=58.83 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=55.8
Q ss_pred EEeec-CCCCCCc--cHHHHHHHHHhc-C----CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 458 ALSLV-GEPIMYP--EINTLVDELHRR-R----ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 458 alSl~-GEPlLyp--~L~elI~~lk~~-g----i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+|-+. |.|++.+ .|.++++.+++. . ..+.+.+|-.. ++.++.|.. ++.+++-|++.+++.++.+.|+.
T Consensus 76 siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~ 155 (394)
T PRK08898 76 TVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIH 155 (394)
T ss_pred EEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCC
Confidence 34444 8999975 899999999875 3 34778888543 788888885 99999999999999999999975
Q ss_pred C
Q 038595 526 F 526 (534)
Q Consensus 526 ~ 526 (534)
.
T Consensus 156 ~ 156 (394)
T PRK08898 156 D 156 (394)
T ss_pred C
Confidence 4
No 150
>PRK13555 azoreductase; Provisional
Probab=96.12 E-value=0.068 Score=52.78 Aligned_cols=124 Identities=11% Similarity=0.175 Sum_probs=83.3
Q ss_pred cEEEEEECcc----chHHHHHHHHHHHHhhCC--CceEEECCCCCCccC-------------------------------
Q 038595 69 KGKLFFISQT----GTSKTLAKRLHALLTSND--LLFDLVDPQTYEPED------------------------------- 111 (534)
Q Consensus 69 kVlI~YgSqT----GtTE~lAe~La~~L~~~G--l~v~V~dL~d~d~~d------------------------------- 111 (534)
+++++++|-. -.+.++|+.+.+.+++.+ ..|+++||.+.++..
T Consensus 3 kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T PRK13555 3 KVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATVDQ 82 (208)
T ss_pred eEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHHHH
Confidence 5899999943 567889999999998765 788888887532110
Q ss_pred ----cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc----ccCCCCCeEEEEEecCcchHH----HHHHHHH
Q 038595 112 ----LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG----SLLLSNCKFAVFGVGSKSYEK----TFNMVAK 179 (534)
Q Consensus 112 ----L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~----~~~Lkgl~yAVFGLGDs~Y~e----~Fc~aAK 179 (534)
+...+.+||++|-|+ +.+|.-.+.|++++-....=|+.. ...|+|++..|++.-...|.. ....+..
T Consensus 83 ~~~~~~~AD~lvi~~P~~n-~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~~~ 161 (208)
T PRK13555 83 YLNQFLEADKVVFAFPLWN-FTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMAVN 161 (208)
T ss_pred HHHHHHHcCEEEEEcCccc-ccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhHHH
Confidence 123579999999999 556667888888876432223321 235889999998762223421 2233446
Q ss_pred HHHHHHHHcCCcee
Q 038595 180 DLSKKMRELGAGEV 193 (534)
Q Consensus 180 ~LDk~L~kLGA~rV 193 (534)
.+..+|.-+|.+.+
T Consensus 162 yl~~il~~~Gi~~v 175 (208)
T PRK13555 162 YVTTVLGFWGITNP 175 (208)
T ss_pred HHHHHHHhcCCCce
Confidence 77788888898644
No 151
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=96.06 E-value=0.05 Score=57.97 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=55.8
Q ss_pred EEee-cCCCCCCc--cHHHHHHHHHhc-CC----cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 458 ALSL-VGEPIMYP--EINTLVDELHRR-RI----STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 458 alSl-~GEPlLyp--~L~elI~~lk~~-gi----~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+|-+ .|-|++-| .|.++++.+++. .+ .+.+.+|-.. ++.++.|.. +++|++-|.+.+.+..+.+.|++
T Consensus 58 tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~ 137 (380)
T PRK09057 58 SIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLH 137 (380)
T ss_pred eEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 3444 49999976 899999999974 32 4778888653 688888875 89999999999999999999986
Q ss_pred C
Q 038595 526 F 526 (534)
Q Consensus 526 ~ 526 (534)
.
T Consensus 138 ~ 138 (380)
T PRK09057 138 S 138 (380)
T ss_pred C
Confidence 4
No 152
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=96.01 E-value=0.012 Score=61.41 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=27.6
Q ss_pred ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHH
Q 038595 352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDL 394 (534)
Q Consensus 352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~ 394 (534)
+..|..|+++|.||--...+... ..-+|++|++.+.++
T Consensus 16 i~~Tn~C~~~C~fC~~~~~~~~~-----~~ls~eei~~~~~~~ 53 (336)
T PRK06245 16 IPLTYECRNRCGYCTFRRDPGQP-----SLLSPEEVKEILRRG 53 (336)
T ss_pred eeccccccCCCccCCCcCCCCcc-----CcCCHHHHHHHHHHH
Confidence 45688999999999865443221 157999999988654
No 153
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.99 E-value=0.03 Score=62.36 Aligned_cols=118 Identities=22% Similarity=0.407 Sum_probs=73.5
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSND 435 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (534)
--|+++|.||-.+.+. | . +...+|++|++++..+. . .| |.+|+|+|--
T Consensus 220 ~GC~~~CsFC~vp~~r--G-~--~Rsr~~e~Ii~Ei~~l~----~--~G----~keI~L~g~n----------------- 267 (509)
T PRK14327 220 YGCDKFCTYCIVPYTR--G-K--ERSRRPEDIIQEVRHLA----R--QG----YKEITLLGQN----------------- 267 (509)
T ss_pred CCCCCCCcCCcccccC--C-C--CeeCCHHHHHHHHHHHH----H--CC----CcEEEEEeec-----------------
Confidence 3599999999876433 2 2 24578999999886532 2 13 5677775421
Q ss_pred CCcccccccHHHhhhccCCceEEEeecCCCCC--CccHHHHHHHHHhcCCc-EEEEc-CCC-C-HHHHhhcC--C--Cce
Q 038595 436 GEEKEGGVTLERLNEGLTPRHCALSLVGEPIM--YPEINTLVDELHRRRIS-TFLVT-NAQ-F-PDKIKLLK--P--VTQ 505 (534)
Q Consensus 436 ~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL--yp~L~elI~~lk~~gi~-~~LvT-NGt-l-pe~l~~L~--~--v~q 505 (534)
+...|..+- ...|.+|++.+++.++. +.+.| |-. + ++.++.+. + +..
T Consensus 268 -----------------------~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g~~~~~ 324 (509)
T PRK14327 268 -----------------------VNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGGNLVEH 324 (509)
T ss_pred -----------------------cccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcCCccce
Confidence 011122221 13477888888877664 44443 211 1 34444443 2 568
Q ss_pred EEEEeeCCCHHHHHhhcCCCCCc
Q 038595 506 LYVSVDAATKDSLKAIDRPLFGD 528 (534)
Q Consensus 506 lyvSlDA~~~e~y~~I~rP~~~~ 528 (534)
+.+.|++.+.+.+++++|....+
T Consensus 325 l~lgvQSgsd~vLk~M~R~~t~e 347 (509)
T PRK14327 325 IHLPVQSGSTEVLKIMARKYTRE 347 (509)
T ss_pred EEeccCCCCHHHHHhcCCCCCHH
Confidence 99999999999999999976543
No 154
>PRK08444 hypothetical protein; Provisional
Probab=95.97 E-value=0.013 Score=62.25 Aligned_cols=128 Identities=12% Similarity=0.194 Sum_probs=79.8
Q ss_pred eeeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecccccccccccc
Q 038595 348 RCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAI 427 (534)
Q Consensus 348 ~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~ 427 (534)
.|.-+.+|+.|.++|.||--...+.....+ . -+|++|++.+.+. +. .|
T Consensus 49 ~n~~In~TN~C~~~C~FCaf~~~~~~~~~y--~-ls~eeI~~~a~~a-----~~-~G----------------------- 96 (353)
T PRK08444 49 VNRHINPTNICADVCKFCAFSAHRKNPNPY--T-MSHEEILEIVKNS-----VK-RG----------------------- 96 (353)
T ss_pred ecCCcccccccccCCccCCCccCCCCCccc--c-CCHHHHHHHHHHH-----HH-CC-----------------------
Confidence 345567799999999999886544333333 3 4899999988753 21 12
Q ss_pred ccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCC-CccHHHHHHHHHhc--CCcEEE-----------EcCCCC
Q 038595 428 DKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM-YPEINTLVDELHRR--RISTFL-----------VTNAQF 493 (534)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL-yp~L~elI~~lk~~--gi~~~L-----------vTNGtl 493 (534)
.+.+.|.+.+-|-+ ..++.++|+.+|+. ++.+.. .++-+.
T Consensus 97 --------------------------~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~ 150 (353)
T PRK08444 97 --------------------------IKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSY 150 (353)
T ss_pred --------------------------CCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCH
Confidence 23344444455554 24678899999975 566665 344455
Q ss_pred HHHHhhcCC--CceEEE-EeeCCCHHHHHhhcCCCC-Cchhhhc
Q 038595 494 PDKIKLLKP--VTQLYV-SVDAATKDSLKAIDRPLF-GDFWERF 533 (534)
Q Consensus 494 pe~l~~L~~--v~qlyv-SlDA~~~e~y~~I~rP~~-~~~w~~~ 533 (534)
.+.++.|+. ++.+-- +-...+++.+++|+.... .+=|.++
T Consensus 151 ~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i 194 (353)
T PRK08444 151 EEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEI 194 (353)
T ss_pred HHHHHHHHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHH
Confidence 788888886 554332 344446777799995332 2556543
No 155
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.85 E-value=0.043 Score=59.54 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=69.7
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 433 (534)
.-|+++|.||--+... | .+ ...+|++|++++..+ +. .| |.+|+|+| |+.+
T Consensus 154 rGC~~~CsFC~~p~~~--g-~~--rsr~~e~V~~Ei~~l----~~--~g----~~eI~l~d~~~~~y------------- 205 (437)
T PRK14331 154 RGCDKKCTYCVVPKTR--G-KE--RSRRLGSILDEVQWL----VD--DG----VKEIHLIGQNVTAY------------- 205 (437)
T ss_pred cCcCCCCccCCcccCC--C-Cc--ccCCHHHHHHHHHHH----HH--CC----CeEEEEeeeccccc-------------
Confidence 4599999999775432 2 22 346899999988643 22 23 56788853 2222
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CC-cEEEEcCC---CCHHHHhhcCC----Cc
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RI-STFLVTNA---QFPDKIKLLKP----VT 504 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi-~~~LvTNG---tlpe~l~~L~~----v~ 504 (534)
|.-+..+.+.+|++.+.+. |+ .+.+.+.- ..++.++.+.. +.
T Consensus 206 -----------------------------~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~~~~~ 256 (437)
T PRK14331 206 -----------------------------GKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADIPQVCE 256 (437)
T ss_pred -----------------------------cCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcCCccCC
Confidence 2111113466677666654 44 24443311 12455554432 57
Q ss_pred eEEEEeeCCCHHHHHhhcCCCC
Q 038595 505 QLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 505 qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.+.+.+++.+.+.+++++|+..
T Consensus 257 ~l~igiqSgsd~vLk~m~R~~t 278 (437)
T PRK14331 257 HLHLPFQAGSDRILKLMDRGYT 278 (437)
T ss_pred ceecccccCChHHHHHcCCCCC
Confidence 8999999999999999999864
No 156
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=95.67 E-value=0.09 Score=56.53 Aligned_cols=69 Identities=17% Similarity=0.312 Sum_probs=54.5
Q ss_pred EEeec-CCCCCCc--cHHHHHHHHHhc-CC----cEEEEcCC-CC-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 458 ALSLV-GEPIMYP--EINTLVDELHRR-RI----STFLVTNA-QF-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 458 alSl~-GEPlLyp--~L~elI~~lk~~-gi----~~~LvTNG-tl-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+|-+. |.|++.| +|.++++.+++. ++ .+.+.+|- ++ ++.++.|.. ++.+.|-|++.+.+.++.+.|++
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~ 148 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH 148 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence 44444 8999753 899999999875 43 36677774 33 677887775 89999999999999999999986
Q ss_pred C
Q 038595 526 F 526 (534)
Q Consensus 526 ~ 526 (534)
.
T Consensus 149 ~ 149 (400)
T PRK07379 149 R 149 (400)
T ss_pred C
Confidence 4
No 157
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=95.63 E-value=0.83 Score=44.62 Aligned_cols=152 Identities=12% Similarity=0.111 Sum_probs=90.1
Q ss_pred CcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc---C-------cCCCCeEEEEeccCCCCCCchHHHHH
Q 038595 68 NKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE---D-------LSKEALVLIVASSWEDGKPPEAAKFF 137 (534)
Q Consensus 68 ~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~---d-------L~~~~lvIfv~STYg~G~pPdna~~F 137 (534)
.+++|++++-...... ++++...+.+.+..+++.||...-++ | |...+.+||..|.|..+.|+ -.+.+
T Consensus 6 ~kiLiI~aHP~~~~S~-~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~w~~~Pa-~LK~w 83 (184)
T PRK04930 6 PKVLLLYAHPESQDSV-ANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLYTYSCPA-LLKEW 83 (184)
T ss_pred CEEEEEECCCCcccCH-HHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCccccCCcH-HHHHH
Confidence 3599999998765322 44443333344567899998765332 1 34678999999999977654 46666
Q ss_pred HHHHHhhcCccccc--ccCCCCCeEEEE-EecCcc--hH-HHHHH-----HHHHHHHHHHHcCCceecceEEeeCCCCCc
Q 038595 138 MNWIDESANDFRVG--SLLLSNCKFAVF-GVGSKS--YE-KTFNM-----VAKDLSKKMRELGAGEVLPVVEGDVDGGEL 206 (534)
Q Consensus 138 le~L~e~~~DFRv~--~~~Lkgl~yAVF-GLGDs~--Y~-e~Fc~-----aAK~LDk~L~kLGA~rV~plg~gD~~~g~~ 206 (534)
++..-.. .|..+ ...|+|+++.|+ ..|... |. +.|+. .-.-+...+.-+|.+.+-|....+.... .
T Consensus 84 iD~V~~~--g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~~-~ 160 (184)
T PRK04930 84 LDRVLSR--GFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARRQ-S 160 (184)
T ss_pred HHHHHhc--CcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCCC-C
Confidence 5554332 13222 235899887765 455543 32 12221 2222334445568877766666555432 2
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 038595 207 DVVFEDWSKRVVAILKSG 224 (534)
Q Consensus 207 e~~f~eW~~~L~~~L~~~ 224 (534)
+++.++|.++..+.|...
T Consensus 161 ~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 161 PEELASHARAYGDWLANP 178 (184)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 456778887777777653
No 158
>PRK08445 hypothetical protein; Provisional
Probab=95.59 E-value=0.047 Score=57.86 Aligned_cols=116 Identities=11% Similarity=0.110 Sum_probs=75.8
Q ss_pred eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595 349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID 428 (534)
Q Consensus 349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
|.-+..|..|+++|.||-....+..+..+ .-+|++|++.+.+. +.+ |.
T Consensus 43 ~~~in~Tn~C~~~C~FCa~~~~~~~~~~y---~l~~eeI~~~~~~a-----~~~-g~----------------------- 90 (348)
T PRK08445 43 DRNINYTNICWVDCKFCAFYRHLKEDDAY---ILSFEEIDKKIEEL-----LAI-GG----------------------- 90 (348)
T ss_pred ccccccccccccCCccCCCccCCCCCCCe---eCCHHHHHHHHHHH-----HHc-CC-----------------------
Confidence 44467799999999999876543222222 23888999988653 222 21
Q ss_pred cCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCC--ccHHHHHHHHHhcCCcEEEE--cC----------C-CC
Q 038595 429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMY--PEINTLVDELHRRRISTFLV--TN----------A-QF 493 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLy--p~L~elI~~lk~~gi~~~Lv--TN----------G-tl 493 (534)
+.+.+++ |.+.-+ .++.++++.+++..-.+.+. |- + +.
T Consensus 91 --------------------------~~i~~~g-g~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~ 143 (348)
T PRK08445 91 --------------------------TQILFQG-GVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISI 143 (348)
T ss_pred --------------------------CEEEEec-CCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCH
Confidence 1233344 444443 37889999999874333332 11 1 23
Q ss_pred HHHHhhcCC--CceE-EEEeeCCCHHHHHhhcC
Q 038595 494 PDKIKLLKP--VTQL-YVSVDAATKDSLKAIDR 523 (534)
Q Consensus 494 pe~l~~L~~--v~ql-yvSlDA~~~e~y~~I~r 523 (534)
++.+++|.+ ++.+ ++-+...+.+..++++.
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~p 176 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAP 176 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCC
Confidence 788999986 7877 58899999999999864
No 159
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.58 E-value=0.056 Score=59.04 Aligned_cols=114 Identities=18% Similarity=0.317 Sum_probs=72.9
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 433 (534)
--|+++|.||-.+... | . ....+|++|++++..+ ++ .| |.+|+|+| +..
T Consensus 157 rGC~~~CsFC~ip~~r--G-~--~rsr~~e~Vv~Ei~~l----~~--~G----~~ei~l~~~~~~~-------------- 207 (445)
T PRK14340 157 RGCNNMCAFCVVPFTR--G-R--ERSHPFASVLDEVRAL----AE--AG----YREITLLGQNVNS-------------- 207 (445)
T ss_pred cCCCCCCCCCCccccc--C-C--CcCCCHHHHHHHHHHH----HH--CC----CeEEEEeecccch--------------
Confidence 4599999999876432 1 2 3457899999988543 22 13 56777742 211
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc--CCcEEEEcC-C--CCHHHHhhcCC----Cc
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR--RISTFLVTN-A--QFPDKIKLLKP----VT 504 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~--gi~~~LvTN-G--tlpe~l~~L~~----v~ 504 (534)
.|.+.....|.+|++.+++. +..+.+.+- - -.++.++.|.. +.
T Consensus 208 ----------------------------y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~~~~g~~ 259 (445)
T PRK14340 208 ----------------------------YSDPEAGADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAARPNICN 259 (445)
T ss_pred ----------------------------hhccCCCchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHhCCCCCC
Confidence 14444444677888887764 344555441 1 12455554432 67
Q ss_pred eEEEEeeCCCHHHHHhhcCCCC
Q 038595 505 QLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 505 qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.+.+.|.+.+.+.+++++|+..
T Consensus 260 ~l~iglQSgsd~vLk~m~R~~t 281 (445)
T PRK14340 260 HIHLPVQSGSSRMLRRMNRGHT 281 (445)
T ss_pred eEEECCCcCCHHHHHhcCCCCC
Confidence 8999999999999999999864
No 160
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.42 E-value=0.065 Score=58.38 Aligned_cols=120 Identities=18% Similarity=0.302 Sum_probs=70.2
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 433 (534)
.-|+++|.||-.+... ..+ ...+|++|++++..+ ++ .| +.+|+|+| |..+|.- .
T Consensus 156 rGC~~~CsFC~ip~~r---G~~--rsr~~e~Iv~Ei~~l----~~--~G----~~eI~l~~~~~~~yg~d-----~---- 211 (446)
T PRK14337 156 QGCDNFCAYCIVPYTR---GRQ--KSRSSAAVLDECRAL----VD--RG----AREITLLGQNVNSYGQD-----K---- 211 (446)
T ss_pred cCCCCCCcCCCcccCC---CCC--eeCCHHHHHHHHHHH----HH--CC----CeEEEEEecCccccccC-----C----
Confidence 4599999999765432 222 457899999988643 22 13 56788865 3333210 0
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-CC--CCHHHHhhcCC----Cc
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-NA--QFPDKIKLLKP----VT 504 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-NG--tlpe~l~~L~~----v~ 504 (534)
.+.+ ..|.+|++.+.+. |+. +.+.+ +- ..++.++.+.. +.
T Consensus 212 ----------------------------~~~~---~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~~~~~~ 260 (446)
T PRK14337 212 ----------------------------HGDG---TSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGELPNLCP 260 (446)
T ss_pred ----------------------------CCCC---ccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHhCCcccC
Confidence 0111 1345555555543 432 33322 11 12455544432 57
Q ss_pred eEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595 505 QLYVSVDAATKDSLKAIDRPLFGDFW 530 (534)
Q Consensus 505 qlyvSlDA~~~e~y~~I~rP~~~~~w 530 (534)
++.+.|++.+.+.+++++|+...+-|
T Consensus 261 ~l~iglQSgsd~vLk~M~R~~t~e~~ 286 (446)
T PRK14337 261 RLHLPLQSGSDRILKAMGRKYDMARY 286 (446)
T ss_pred eEEECCCCCCHHHHHhCCCCCCHHHH
Confidence 89999999999999999998654433
No 161
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=95.38 E-value=0.022 Score=62.05 Aligned_cols=187 Identities=13% Similarity=0.078 Sum_probs=120.1
Q ss_pred hhhhhhhhhHHHHHhhchhhhhhcCCCC---CCCCCCCCCCCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC
Q 038595 30 NCSRLQEATTFYFAYKSRRLNKFLRHSD---YRKKPENPNPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT 106 (534)
Q Consensus 30 ~~~~~l~a~~~y~~~k~~~~~~~~~~~~---~~~~~~~~~~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d 106 (534)
-+..+|+.+.+|..|..++..+.++-.. -..++.-+--.-++|.=+=++|-.-.+|+.|++.+...-+ +.++
T Consensus 317 d~pevil~gal~lhy~mikqmkgvpgvk~Er~~ea~evrhcalslVgepi~yp~in~f~k~lH~k~issfl---vtna-- 391 (601)
T KOG1160|consen 317 DAPEVILKGALYLHYNMIKQMKGVPGVKAERFEEAEEVRHCALSLVGEPIMYPEINPFAKLLHQKLISSFL---VTNA-- 391 (601)
T ss_pred CCchhhhHHHHHHHHHHHHHhhcCCCcCHHHHHhhhhhhhheeeeecccccchhhhHHHHHHHhccchHHh---cccc--
Confidence 4567999999999999999875553221 2222222222335777788889999999999998754321 1111
Q ss_pred CCccCcC----CCCeEEE---EeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcc-hHHHHHHHH
Q 038595 107 YEPEDLS----KEALVLI---VASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKS-YEKTFNMVA 178 (534)
Q Consensus 107 ~d~~dL~----~~~lvIf---v~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~-Y~e~Fc~aA 178 (534)
..++++. -..++++ .+-|.-.+.+.+..++||+||.+...|.+ .+.+..-.++.++|.||+. -+..||.++
T Consensus 392 q~pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdFwEr~~d~l~~lk-~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~ 470 (601)
T KOG1160|consen 392 QFPEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDFWERFLDSLKALK-KKQQRTVYRLTLVKGWNSDDLPAYFNLVS 470 (601)
T ss_pred cChHHHhchhhhheeEEEEeecchhhhcCCCCchHHHHHHHHHHHHHHHH-HhhcceEEEEEEeccccccccHHHHHHHh
Confidence 1122221 1234444 44455557777789999999998877765 2334444689999999985 456899999
Q ss_pred HHHHHHHHHcCCceecceEEeeCC--CCCcHHHHHHHHHHHHHHHH
Q 038595 179 KDLSKKMRELGAGEVLPVVEGDVD--GGELDVVFEDWSKRVVAILK 222 (534)
Q Consensus 179 K~LDk~L~kLGA~rV~plg~gD~~--~g~~e~~f~eW~~~L~~~L~ 222 (534)
+-+-.+++-+|++...+.-.-.-. +-...++|.++..+|...+.
T Consensus 471 rglp~fieVkGvty~ges~~s~lTm~nvp~~Ee~v~Fv~eL~~l~~ 516 (601)
T KOG1160|consen 471 RGLPDFIEVKGVTYCGESELSNLTMTNVPWHEEVVEFVFELVDLLQ 516 (601)
T ss_pred ccCCceEEEeceeEecccccCcccccCccHHHHHHHHHHHHHHhhh
Confidence 999999999999876543221111 11235677788777754433
No 162
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=95.24 E-value=0.1 Score=57.06 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=55.3
Q ss_pred EEee-cCCCCCCc--cHHHHHHHHHhc-C----CcEEEEcCCC-C-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCC
Q 038595 458 ALSL-VGEPIMYP--EINTLVDELHRR-R----ISTFLVTNAQ-F-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 458 alSl-~GEPlLyp--~L~elI~~lk~~-g----i~~~LvTNGt-l-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+|.+ .|-|++.+ .|.++++.+++. . ..+.+.+|-. + ++.++.|.. ++++.+-|++.+.+..+.+.|++
T Consensus 117 ~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~ 196 (449)
T PRK09058 117 AVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD 196 (449)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC
Confidence 3444 49999864 899999999874 3 3467888754 3 778877775 89999999999999999999986
Q ss_pred CC
Q 038595 526 FG 527 (534)
Q Consensus 526 ~~ 527 (534)
..
T Consensus 197 ~~ 198 (449)
T PRK09058 197 DR 198 (449)
T ss_pred CH
Confidence 53
No 163
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.24 E-value=0.099 Score=56.78 Aligned_cols=117 Identities=20% Similarity=0.376 Sum_probs=69.2
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecc--ccccccccccccCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDF--FYFGTVSSAIDKQIPS 433 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 433 (534)
.-|+++|.||-.+... | .+ ...+|++|++++..+. + +| |.+|+|+|- ..+|. | +
T Consensus 155 rGC~~~CsfC~~p~~~--g-~~--Rsr~~e~Iv~Ei~~l~----~--~G----~~ei~l~~~~~~~yg~-----d--~-- 210 (439)
T PRK14328 155 YGCNNFCTYCIVPYVR--G-RE--RSRKPEDIIAEIKELV----S--EG----YKEVTLLGQNVNSYGK-----D--L-- 210 (439)
T ss_pred hCcCCCCCCCCccccc--C-Cc--ccCCHHHHHHHHHHHH----H--CC----CcEEEEeccccCcCCc-----C--C--
Confidence 4599999999876433 2 22 3468899998886532 2 13 456777431 11110 0 0
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----Cc
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP----VT 504 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~----v~ 504 (534)
.+ .+.+.+|++.+.+. |+. +.+.+ |-. .++.++.|.. +.
T Consensus 211 ------------------------------~~--~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~~~~~ 258 (439)
T PRK14328 211 ------------------------------EE--KIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCDKVCE 258 (439)
T ss_pred ------------------------------CC--CcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCCCcCc
Confidence 00 13466677666653 432 33322 221 2455555542 56
Q ss_pred eEEEEeeCCCHHHHHhhcCCCCCc
Q 038595 505 QLYVSVDAATKDSLKAIDRPLFGD 528 (534)
Q Consensus 505 qlyvSlDA~~~e~y~~I~rP~~~~ 528 (534)
++.+.+++.+.+.+++++|+...+
T Consensus 259 ~l~iglQSgsd~vLk~M~R~~~~~ 282 (439)
T PRK14328 259 HIHLPVQSGSNRILKKMNRHYTRE 282 (439)
T ss_pred eeeeCCCcCCHHHHHhCCCCCCHH
Confidence 899999999999999999986543
No 164
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=95.20 E-value=0.041 Score=59.01 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=31.6
Q ss_pred eeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHH
Q 038595 350 MEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDL 394 (534)
Q Consensus 350 ~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~ 394 (534)
+-+.+|+.|.|+|.||--...+ +.. ....-+|++|.+.+.+.
T Consensus 61 ~~in~TN~C~~~C~fCaF~~~~--~~~-~~y~Ls~eeI~~~~~~~ 102 (370)
T COG1060 61 RNINYTNICVNDCTFCAFYRKP--GDP-KAYTLSPEEILEEVREA 102 (370)
T ss_pred ecCCcchhhcCCCCccccccCC--CCc-cccccCHHHHHHHHHHH
Confidence 4567899999999999876655 222 23457899999988764
No 165
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=95.17 E-value=0.083 Score=57.36 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=69.4
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccc-cccccccccCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYF-GTVSSAIDKQIP 432 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~ 432 (534)
.-|+++|.||--+... | .+ ...+|++|++++..+.. +| |.+|+|.| +..+ |.
T Consensus 153 rGC~~~CsfC~~~~~~--G-~~--rsr~~e~I~~Ei~~l~~------~g----~~ei~l~~~~~~~y~g~---------- 207 (438)
T TIGR01574 153 IGCNKFCTYCIVPYTR--G-DE--ISRPFDDILQEVQKLAE------KG----VREITLLGQNVNAYRGK---------- 207 (438)
T ss_pred cCCCCCCCCCCeeeec--C-CC--cccCHHHHHHHHHHHHH------cC----CeEEEEEecccCCccCC----------
Confidence 4599999999865432 2 22 34789999998865432 23 45677744 1111 11
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEE-cCCC--CHHHHhhcCC----C
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLV-TNAQ--FPDKIKLLKP----V 503 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~Lv-TNGt--lpe~l~~L~~----v 503 (534)
. +.| -.+.+.+|++.+.+. |+. +.+. .|.. .++.++.|.. +
T Consensus 208 -----d----------------------~~~---~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~~g~~~ 257 (438)
T TIGR01574 208 -----D----------------------FEG---KTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFANNPKLC 257 (438)
T ss_pred -----C----------------------CCC---CcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHhCCCcc
Confidence 0 000 012355666666543 442 2221 1221 1444544432 5
Q ss_pred ceEEEEeeCCCHHHHHhhcCCCCCchhh
Q 038595 504 TQLYVSVDAATKDSLKAIDRPLFGDFWE 531 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w~ 531 (534)
..+.+.|++.+.+.+++++|+...+-|.
T Consensus 258 ~~l~iglQSgsd~vLk~m~R~~t~~~~~ 285 (438)
T TIGR01574 258 KSMHLPVQSGSSEILKLMKRGYTREWYL 285 (438)
T ss_pred CceeeCCCcCCHHHHHhcCCCCCHHHHH
Confidence 7899999999999999999986544443
No 166
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=95.13 E-value=0.12 Score=56.45 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=51.2
Q ss_pred cCCCCCCc-cHHHHHHHHHhc-CC-cEEEEcCCCC--HHHHhhcCC-CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIMYP-EINTLVDELHRR-RI-STFLVTNAQF--PDKIKLLKP-VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlLyp-~L~elI~~lk~~-gi-~~~LvTNGtl--pe~l~~L~~-v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|-|++.+ +|.++++.+++. ++ .+.+.+|-.. ++.++.|.. ++.+.|-|.+.|.+..++++|++.
T Consensus 109 GGTPs~l~~~L~~ll~~i~~~f~i~eis~E~~P~~lt~e~L~~l~~~vnrlsiGVQS~~d~vLk~~gR~h~ 179 (433)
T PRK08629 109 GGTTTILEDELAKTLELAKKLFSIKEVSCESDPNHLDPPKLKQLKGLIDRLSIGVQSFNDDILKMVDRYEK 179 (433)
T ss_pred CCccccCHHHHHHHHHHHHHhCCCceEEEEeCcccCCHHHHHHHHHhCCeEEEecCcCCHHHHHHcCCCCC
Confidence 38898865 688888888875 55 3777788664 676766655 899999999999999999999753
No 167
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.09 E-value=0.084 Score=57.29 Aligned_cols=117 Identities=22% Similarity=0.278 Sum_probs=69.0
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccc-cccccccccCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYF-GTVSSAIDKQIP 432 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~ 432 (534)
--|+++|.||-.+... | .++ ..+|++|++++..+. .+ | +.+|+|.| |+.+ |. +
T Consensus 155 rGCp~~CsFC~~p~~~--G-~~~--sr~~e~Iv~Ei~~l~----~~--g----~~ei~l~d~~~~~y~~~-----~---- 210 (444)
T PRK14325 155 EGCDKYCTFCVVPYTR--G-EEV--SRPVDDVLAEVAQLA----EQ--G----VREITLLGQNVNAYRGE-----G---- 210 (444)
T ss_pred hCCCCCCCccccCccc--C-Ccc--cCCHHHHHHHHHHHH----HC--C----CcEEEEEeeccccccCC-----C----
Confidence 3599999999775332 2 222 478999999886432 21 4 34677753 2111 10 0
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----C
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP----V 503 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~----v 503 (534)
+.|.+ ..+.+|++.+.+. |+. +.+.+ +.. .++.++.+.. +
T Consensus 211 ----------------------------~~~~~---~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~~~~~~ 259 (444)
T PRK14325 211 ----------------------------PDGEI---ADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYADLPKLV 259 (444)
T ss_pred ----------------------------CCCCc---chHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHcCCccc
Confidence 00100 2466677776664 442 44432 222 2455554432 5
Q ss_pred ceEEEEeeCCCHHHHHhhcCCCCC
Q 038595 504 TQLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
..+.+.+++.+.+.++.++|+...
T Consensus 260 ~~l~igiqSgs~~vLk~m~R~~~~ 283 (444)
T PRK14325 260 PFLHLPVQSGSDRILKAMNRGHTA 283 (444)
T ss_pred CceeccCCcCCHHHHHhCCCCCCH
Confidence 789999999999999999998643
No 168
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=95.04 E-value=0.055 Score=57.36 Aligned_cols=108 Identities=16% Similarity=0.277 Sum_probs=75.9
Q ss_pred cccccccccccCCC--CCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595 357 ACANKCVFCWRHHT--NPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434 (534)
Q Consensus 357 ~C~~~C~~C~r~~~--~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (534)
.|+.+|-||..... +++... .+.++++|++.|+.+ ++. |.
T Consensus 60 ~c~edC~yC~qS~~~~~~~~~~---~l~~~eeIle~Ak~a-----k~~-Ga----------------------------- 101 (335)
T COG0502 60 CCPEDCAYCSQSARYKTGVKAR---KLMEVEEILEAAKKA-----KAA-GA----------------------------- 101 (335)
T ss_pred CCCCCCCCccccccCcCCCchh---hcCCHHHHHHHHHHH-----HHc-CC-----------------------------
Confidence 48999999998643 334333 468899999999653 433 21
Q ss_pred CCCcccccccHHHhhhccCCceEEEeec-CCCCCCccHHHHHHHHH-hcCCcEEEEcCCCC-HHHHhhcCC--CceEEEE
Q 038595 435 DGEEKEGGVTLERLNEGLTPRHCALSLV-GEPIMYPEINTLVDELH-RRRISTFLVTNAQF-PDKIKLLKP--VTQLYVS 509 (534)
Q Consensus 435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~-GEPlLyp~L~elI~~lk-~~gi~~~LvTNGtl-pe~l~~L~~--v~qlyvS 509 (534)
.+.|-++.. |-+---+++.++|+.+| +.|+.+. .|-|.+ ++.+++|.. |+...--
T Consensus 102 -------------------~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c-~slG~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 102 -------------------TRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVC-ASLGMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred -------------------ceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHh-hccCCCCHHHHHHHHHcChhheecc
Confidence 123333332 31433368888999999 5686654 566776 788999986 8999999
Q ss_pred eeCCCHHHHHhhcC
Q 038595 510 VDAATKDSLKAIDR 523 (534)
Q Consensus 510 lDA~~~e~y~~I~r 523 (534)
||. +++-|.+|+-
T Consensus 162 LeT-s~~~y~~I~t 174 (335)
T COG0502 162 LET-SPEFYENIIT 174 (335)
T ss_pred ccc-CHHHHcccCC
Confidence 999 9999999985
No 169
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=95.03 E-value=0.089 Score=56.95 Aligned_cols=118 Identities=22% Similarity=0.316 Sum_probs=70.9
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 433 (534)
--|+++|.||--+... | +....+|++|++++..+. . .| |.+|+|.| |..+|.
T Consensus 132 rGC~~~CsFC~ip~~r--G---~~rsrs~e~Iv~Ei~~l~----~--~G----~~ei~l~~~~~~~yg~----------- 185 (418)
T PRK14336 132 QGCDNFCTYCVVPYRR--G---REKSRSIAEIGCEVAELV----R--RG----SREVVLLGQNVDSYGH----------- 185 (418)
T ss_pred cCCCCCCccCCccccC--C---CCccCCHHHHHHHHHHHH----H--CC----CeEEEEEecCcccccc-----------
Confidence 3599999999765432 1 224678999999986543 2 13 56788752 222221
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCC-CCccHHHHHHHHHhc-CC-cEEEEc-CCC--CHHHHhhcCC----C
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPI-MYPEINTLVDELHRR-RI-STFLVT-NAQ--FPDKIKLLKP----V 503 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPl-Lyp~L~elI~~lk~~-gi-~~~LvT-NGt--lpe~l~~L~~----v 503 (534)
.+ -.+.|.+|++.+++. |+ .+.+.+ +-. .++.++.|.. +
T Consensus 186 -------------------------------d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~~~~ 234 (418)
T PRK14336 186 -------------------------------DLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLPKVC 234 (418)
T ss_pred -------------------------------CCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcCccC
Confidence 10 013466677666653 32 343332 211 2444444432 5
Q ss_pred ceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595 504 TQLYVSVDAATKDSLKAIDRPLFGDFW 530 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w 530 (534)
..+.+.+++.+.+.+++++|+...+-+
T Consensus 235 ~~l~lglQSgsd~vLk~M~R~~~~~~~ 261 (418)
T PRK14336 235 RSLSLPVQAGDDTILAAMRRGYTNQQY 261 (418)
T ss_pred CceecCCCcCCHHHHHHhCCCCCHHHH
Confidence 789999999999999999998654433
No 170
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.99 E-value=0.12 Score=57.41 Aligned_cols=116 Identities=21% Similarity=0.338 Sum_probs=67.6
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecc--ccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDF--FYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~--~~~~~~~~~~~~~~~ 432 (534)
+--|+++|.||-.+... | . +...+|++|++++..+ +. .| +.+|+|+|- ..+|.-
T Consensus 164 srGCp~~CsFC~ip~~r--G-~--~rsr~~e~Vv~Ei~~l----~~--~g----~~ei~l~d~n~~~yG~d--------- 219 (502)
T PRK14326 164 SVGCNNTCTFCIVPSLR--G-K--EKDRRPGDILAEVQAL----VD--EG----VLEVTLLGQNVNAYGVS--------- 219 (502)
T ss_pred ccCCCCCCccCceeccC--C-C--cccCCHHHHHHHHHHH----HH--CC----CceEEEEeecccccccC---------
Confidence 44599999999886543 2 2 2357899999988543 22 13 567888542 333320
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-C--CCCHHHHhhcCC----C
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-N--AQFPDKIKLLKP----V 503 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-N--Gtlpe~l~~L~~----v 503 (534)
+ +. .+.+.+|++.+.+. |+. +.+.+ + ...++.++.|.. .
T Consensus 220 ----------------------------~-~~---~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~ 267 (502)
T PRK14326 220 ----------------------------F-GD---RGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVC 267 (502)
T ss_pred ----------------------------C-CC---HHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcC
Confidence 0 00 01344555555443 332 33322 1 111445544432 4
Q ss_pred ceEEEEeeCCCHHHHHhhcCCCC
Q 038595 504 TQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.++.+.+++.+.+.+++++|+..
T Consensus 268 ~~l~lglQSgsd~iLk~m~R~~t 290 (502)
T PRK14326 268 PQLHMPLQSGSDRVLRAMRRSYR 290 (502)
T ss_pred CcEEeccCCCCHHHHHhcCCCCC
Confidence 77999999999999999999854
No 171
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.97 E-value=0.098 Score=57.44 Aligned_cols=120 Identities=21% Similarity=0.304 Sum_probs=72.4
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~ 432 (534)
+.-|+++|.||-.+... | . +...+|+.|++++..+ +.. | |.+|+|+| +..||..
T Consensus 175 srGCp~~CsFC~ip~~~--G-~--~rsrs~e~Vv~Ei~~l----~~~--g----~~eI~l~~~~~~~y~~d--------- 230 (467)
T PRK14329 175 MRGCDNMCTFCVVPFTR--G-R--ERSRDPESILNEVRDL----FAK--G----YKEVTLLGQNVDSYLWY--------- 230 (467)
T ss_pred ccCcccCCCCCcccccc--C-C--cccCCHHHHHHHHHHH----HHC--C----CeEEEEEeecccccccc---------
Confidence 34599999999765422 2 2 3567899999988643 221 3 56788854 1111110
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCC--CCCccHHHHHHHHHhc--CCcEEEEc-CC--CCHHHHhhcCC---
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEP--IMYPEINTLVDELHRR--RISTFLVT-NA--QFPDKIKLLKP--- 502 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEP--lLyp~L~elI~~lk~~--gi~~~LvT-NG--tlpe~l~~L~~--- 502 (534)
.+.| ..-..|.+|++.+.+. +..+.+.+ |. ..++.++.|..
T Consensus 231 -----------------------------~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~m~~~~~ 281 (467)
T PRK14329 231 -----------------------------GGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEVMAKYDN 281 (467)
T ss_pred -----------------------------cCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHHHHHhCCC
Confidence 0111 1113577777777654 34454443 11 12455554432
Q ss_pred -CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595 503 -VTQLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 503 -v~qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
+..+.+.+.+.+.+.++.++|+...
T Consensus 282 g~~~i~iglQSgsd~vLk~m~R~~t~ 307 (467)
T PRK14329 282 ICKHIHLPVQSGSDRILKLMNRKYTR 307 (467)
T ss_pred CCCeEEeCCCcCCHHHHHhcCCCCCH
Confidence 6789999999999999999998643
No 172
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=94.85 E-value=0.081 Score=55.24 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=72.1
Q ss_pred ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595 352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI 431 (534)
Q Consensus 352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (534)
+..|+.|+++|.||--...+... .....+|++|++.+.++. . .|. .++++.
T Consensus 8 i~~tn~C~~~C~fCaf~~~~g~~---~~~~l~~eeI~~~a~~~~-----~-~G~----~ei~l~---------------- 58 (322)
T TIGR03550 8 IPLTRLCRNRCGYCTFRRPPGEL---EAALLSPEEVLEILRKGA-----A-AGC----TEALFT---------------- 58 (322)
T ss_pred eccccCcCCCCccCCccccCCCc---ccccCCHHHHHHHHHHHH-----H-CCC----CEEEEe----------------
Confidence 34688999999999976544221 233579999999887542 2 132 344431
Q ss_pred CCCCCCcccccccH----HHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCcEEEEcCCCC-HHHHhhcCC--C
Q 038595 432 PSNDGEEKEGGVTL----ERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RISTFLVTNAQF-PDKIKLLKP--V 503 (534)
Q Consensus 432 ~~~~~~~~~~~~~~----~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~~~LvTNGtl-pe~l~~L~~--v 503 (534)
+|..+ +.+.|.++. ..+ +. ...++.++++.+++. ++...+ +-|.+ ++.++.|.. +
T Consensus 59 ---------~G~~p~~~~~~~~~~l~~--~~~----~~-~~~~~~~~~~~i~~e~~~~~~~-~~g~lt~e~l~~Lk~aG~ 121 (322)
T TIGR03550 59 ---------FGEKPEERYPEAREWLAE--MGY----DS-TLEYLRELCELALEETGLLPHT-NPGVMSRDELARLKPVNA 121 (322)
T ss_pred ---------cCCCccccHHHHHHHHHh--cCC----cc-HHHHHHHHHHHHHHhcCCcccc-CCCCCCHHHHHHHHhhCC
Confidence 11211 112221111 001 01 135788888888865 654443 33444 677877776 4
Q ss_pred ceEEEEeeCCCHHHHHhhcCCC
Q 038595 504 TQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+ ++++++..++..++.++..+
T Consensus 122 ~-~~~~~Et~~~~l~~~~~~~~ 142 (322)
T TIGR03550 122 S-MGLMLETTSERLCKGEAHYG 142 (322)
T ss_pred C-CCcchhhhccccccccccCC
Confidence 4 57888888877666665544
No 173
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=94.80 E-value=0.072 Score=56.25 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=41.6
Q ss_pred eec-CCCCCC-ccHHHHHHHHHhc---CCcEEEEcCCCC--HHHHhhcCC--CceEEEEee
Q 038595 460 SLV-GEPIMY-PEINTLVDELHRR---RISTFLVTNAQF--PDKIKLLKP--VTQLYVSVD 511 (534)
Q Consensus 460 Sl~-GEPlLy-p~L~elI~~lk~~---gi~~~LvTNGtl--pe~l~~L~~--v~qlyvSlD 511 (534)
|++ |||++- -+-.++|+.||+. ++-+.|-|||.+ ++.++.|.. +|-+.+-.+
T Consensus 83 siTGGdPl~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~ 143 (353)
T COG2108 83 SITGGDPLLEIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP 143 (353)
T ss_pred cccCCChHHHHHHHHHHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCC
Confidence 445 999995 4778889999865 367999999998 688999985 788877764
No 174
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=94.56 E-value=0.21 Score=53.61 Aligned_cols=115 Identities=17% Similarity=0.276 Sum_probs=70.5
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~ 432 (534)
+.-|+++|.||-.+... | ++...+|+.|++++..+++ + | +.+|+|.| ++.||.
T Consensus 145 srGCp~~CsfC~~~~~~--g---~~r~r~~e~I~~Ei~~l~~----~--g----~~ei~l~~~~~~~y~~---------- 199 (414)
T TIGR01579 145 QDGCNFFCSYCIIPFAR--G---RSRSVPMEAILKQVKILVA----K--G----YKEIVLTGVNLGSYGD---------- 199 (414)
T ss_pred ccCcCCCCCCCceeeec--C---CCccCCHHHHHHHHHHHHH----C--C----CceEEEeeEccchhcc----------
Confidence 45699999999765432 2 2456899999999865432 1 3 56777754 222221
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCC-CCccHHHHHHHHHhc-CCc-EEEEc-CCC--CHHHHhhcCC----
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPI-MYPEINTLVDELHRR-RIS-TFLVT-NAQ--FPDKIKLLKP---- 502 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPl-Lyp~L~elI~~lk~~-gi~-~~LvT-NGt--lpe~l~~L~~---- 502 (534)
-+ -...+.+|++.+++. |+. +.+.+ +.. -++.++.|..
T Consensus 200 --------------------------------d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~ 247 (414)
T TIGR01579 200 --------------------------------DLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASEKRL 247 (414)
T ss_pred --------------------------------CCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhcCcc
Confidence 00 013566777777654 442 33321 111 1455555542
Q ss_pred CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 503 VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 503 v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
..++.+.|.+.+++.+++++|+..
T Consensus 248 ~~~l~lglESgs~~vLk~m~R~~~ 271 (414)
T TIGR01579 248 CPHLHLSLQSGSDRVLKRMRRKYT 271 (414)
T ss_pred CCCeEECCCcCChHHHHhcCCCCC
Confidence 467999999999999999999754
No 175
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.55 E-value=0.14 Score=56.26 Aligned_cols=117 Identities=21% Similarity=0.340 Sum_probs=75.4
Q ss_pred cccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCC
Q 038595 357 ACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDG 436 (534)
Q Consensus 357 ~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (534)
-|+++|.||--+.+.-.- .-.+|++|+.++..+ +.+ | |+||+|+ |.=
T Consensus 153 GCn~~CtfCiiP~~RG~~-----rSr~~e~Il~ev~~L----v~~--G----~kEI~L~-----gqd------------- 199 (437)
T COG0621 153 GCNKFCTFCIIPYARGKE-----RSRPPEDILKEVKRL----VAQ--G----VKEIVLT-----GQD------------- 199 (437)
T ss_pred CcCCCCCeeeeeccCCCc-----cCCCHHHHHHHHHHH----HHC--C----CeEEEEE-----EEe-------------
Confidence 599999999998765222 236899999998643 332 3 6788882 100
Q ss_pred CcccccccHHHhhhccCCceEEEeecCCCCC--CccHHHHHHHHHhc-CCc-EEEEcCCC---CHHHHhhcCC----Cce
Q 038595 437 EEKEGGVTLERLNEGLTPRHCALSLVGEPIM--YPEINTLVDELHRR-RIS-TFLVTNAQ---FPDKIKLLKP----VTQ 505 (534)
Q Consensus 437 ~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL--yp~L~elI~~lk~~-gi~-~~LvTNGt---lpe~l~~L~~----v~q 505 (534)
++-.|--+= .+.|.+|++.+.+. |+. +.+.|==- ..+.++.+.. +..
T Consensus 200 ----------------------v~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~ 257 (437)
T COG0621 200 ----------------------VNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPH 257 (437)
T ss_pred ----------------------hhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCccccc
Confidence 011233332 47888888888885 433 55543211 1244443332 567
Q ss_pred EEEEeeCCCHHHHHhhcCCCCCc
Q 038595 506 LYVSVDAATKDSLKAIDRPLFGD 528 (534)
Q Consensus 506 lyvSlDA~~~e~y~~I~rP~~~~ 528 (534)
|.++|+..+.+.+++++|+...+
T Consensus 258 lHlPvQsGsd~ILk~M~R~yt~e 280 (437)
T COG0621 258 LHLPVQSGSDRILKRMKRGYTVE 280 (437)
T ss_pred ccCccccCCHHHHHHhCCCcCHH
Confidence 89999999999999999987543
No 176
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=94.44 E-value=1.7 Score=42.23 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=84.3
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC----------cCCCCeEEEEeccCCCCCCchHHHHHHH
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED----------LSKEALVLIVASSWEDGKPPEAAKFFMN 139 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d----------L~~~~lvIfv~STYg~G~pPdna~~Fle 139 (534)
++|+++.-......+-+.|.+.+... ..|++.||.+..++. |...+.+||..|-|..+.|+ -.+.+++
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~-~~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~w~~~Pa-~lK~wiD 79 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL-EGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPP-LLKLWID 79 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc-CCeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChhhccccH-HHHHHHH
Confidence 68888888776555666666666543 368888887654321 34578999999999966554 4555554
Q ss_pred HHHhhcCcccccccCCCCCeE-EEEEecCc--chH----HHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHH
Q 038595 140 WIDESANDFRVGSLLLSNCKF-AVFGVGSK--SYE----KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFED 212 (534)
Q Consensus 140 ~L~e~~~DFRv~~~~Lkgl~y-AVFGLGDs--~Y~----e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~e 212 (534)
..-....-|.-+...|+|+++ .|+..|.. .|. ..|...-.-+...+.-+|.+.+-|........- .++++++
T Consensus 80 ~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~-~~~~~~~ 158 (176)
T PRK00871 80 KVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFIC-DDETLEG 158 (176)
T ss_pred HHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccC-CHHHHHH
Confidence 433211112222245889866 45566665 232 122223444555666679887766543332211 1344555
Q ss_pred HHHHHHHHHH
Q 038595 213 WSKRVVAILK 222 (534)
Q Consensus 213 W~~~L~~~L~ 222 (534)
..++..+.|.
T Consensus 159 ~~~~~~~~L~ 168 (176)
T PRK00871 159 QARHYKQRLL 168 (176)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 177
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.38 E-value=0.19 Score=55.02 Aligned_cols=117 Identities=21% Similarity=0.325 Sum_probs=67.3
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~ 432 (534)
+--|+++|.||--+... | . ....+|++|++++..+ ..+ | |.+|+|+| |..+|.
T Consensus 161 srGC~~~CsFC~ip~~r--G-~--~rsr~~e~Iv~Ei~~l----~~~--G----~kei~l~~~~~~~y~~---------- 215 (449)
T PRK14332 161 MRGCNNFCTFCVVPYTR--G-R--ERSRDPKSIVREIQDL----QEK--G----IRQVTLLGQNVNSYKE---------- 215 (449)
T ss_pred cCCcCCCCCCCCccccc--C-C--cccCCHHHHHHHHHHH----HHC--C----CeEEEEecccCCcccC----------
Confidence 44599999999776432 2 2 2457899999988543 221 3 67888863 333321
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CC-cEEEEc-C--CCCHHHHhhcC--C--C
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RI-STFLVT-N--AQFPDKIKLLK--P--V 503 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi-~~~LvT-N--Gtlpe~l~~L~--~--v 503 (534)
- -..|.++++.+.+. |+ .+.+.+ | ...++.++.+. + +
T Consensus 216 --------------------------------~--~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~ 261 (449)
T PRK14332 216 --------------------------------Q--STDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFC 261 (449)
T ss_pred --------------------------------C--cccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCCCcc
Confidence 0 01344455444332 32 133322 1 11133333332 2 4
Q ss_pred ceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595 504 TQLYVSVDAATKDSLKAIDRPLFGDFW 530 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w 530 (534)
..+.+.+++.+.+.+++++|+...+-|
T Consensus 262 ~~l~lgvQSgsd~vLk~m~R~~t~~~~ 288 (449)
T PRK14332 262 PNIHLPLQAGNTRVLEEMKRSYSKEEF 288 (449)
T ss_pred ceEEECCCcCCHHHHHhhCCCCCHHHH
Confidence 689999999999999999998654333
No 178
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=94.36 E-value=0.18 Score=52.72 Aligned_cols=55 Identities=4% Similarity=0.038 Sum_probs=37.4
Q ss_pred ccHHHHHHHHHhc--CCcEEEEcCCC--CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595 469 PEINTLVDELHRR--RISTFLVTNAQ--FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 469 p~L~elI~~lk~~--gi~~~LvTNGt--lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP 524 (534)
.++.++|+.+++. ++.+.+.|.-. ..+.++.|.. ++.+..-+.+. +..|+++++.
T Consensus 127 ~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~hnlEt~-~~l~~~vrr~ 187 (302)
T TIGR00510 127 SHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYNHNLETV-ERLTPFVRPG 187 (302)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhcccccch-HHHHHHhCCC
Confidence 4688899999875 56677666422 3556666654 56666666766 7789999874
No 179
>PLN02428 lipoic acid synthase
Probab=94.35 E-value=0.22 Score=53.15 Aligned_cols=151 Identities=18% Similarity=0.234 Sum_probs=89.9
Q ss_pred HHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeecccccccccccccccCCCCCCCCccccc
Q 038595 301 VIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWK 380 (534)
Q Consensus 301 ~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~ 380 (534)
.+++.|++.+-+-|-. +| .--..|-||.+.=+|+..-.-|.+ +..|+.+|-||-..+...- . +
T Consensus 67 ~~~~~~~~~~l~tvc~-~a---------~cpn~~ec~~~~~~~~~taT~mil--g~gCtr~CrFCav~~~~~p--~-~-- 129 (349)
T PLN02428 67 EIKEKLRELKLNTVCE-EA---------QCPNIGECWNGGGTGTATATIMIL--GDTCTRGCRFCAVKTSRTP--P-P-- 129 (349)
T ss_pred HHHHHHHHCCCceeec-CC---------CCCChHHhhCCCCCCCceEEEEEe--cCCCCCCCCCCcCCCCCCC--C-C--
Confidence 4567777777776642 11 223678899987777666666666 5689999999998654311 1 1
Q ss_pred CCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEe
Q 038595 381 MDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALS 460 (534)
Q Consensus 381 ~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alS 460 (534)
.+|+++++.+.. +..+ |. +.+|| .|
T Consensus 130 -~d~~Ep~~vA~~-----v~~~-Gl----k~vvl--------------------------------------------tS 154 (349)
T PLN02428 130 -PDPDEPENVAEA-----IASW-GV----DYVVL--------------------------------------------TS 154 (349)
T ss_pred -CChhhHHHHHHH-----HHHc-CC----CEEEE--------------------------------------------EE
Confidence 234454443322 1111 22 12233 11
Q ss_pred ecCC--C-CCCccHHHHHHHHHhcC--CcEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595 461 LVGE--P-IMYPEINTLVDELHRRR--ISTFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 461 l~GE--P-lLyp~L~elI~~lk~~g--i~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP 524 (534)
+... | .-..++.++|+.+++.. +.+.+.|=+.+ ++.++.|.. ++.+...+++ .++.|++|+.|
T Consensus 155 g~rddl~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~d~elL~~L~eAG~d~i~hnlET-v~rL~~~Ir~~ 226 (349)
T PLN02428 155 VDRDDLPDGGSGHFAETVRRLKQLKPEILVEALVPDFRGDLGAVETVATSGLDVFAHNIET-VERLQRIVRDP 226 (349)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHhCCCcEEEEeCccccCCHHHHHHHHHcCCCEEccCccC-cHHHHHHhcCC
Confidence 1111 1 11348899999999863 44444433322 677777775 7888888886 56789999843
No 180
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.28 E-value=0.2 Score=54.28 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=69.6
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~ 432 (534)
+.-|+++|.||--+... |..+ ..+|++|++++..+. .+ | |++|+|+| ++.+|.-
T Consensus 134 srGC~~~CsFC~ip~~r--G~~~---sr~~e~I~~Ei~~l~----~~--G----~keI~l~~~~~~~yg~d--------- 189 (420)
T PRK14339 134 SIGCDKKCTYCIVPHTR--GKEI---SIPMDLILKEAEKAV----NN--G----AKEIFLLGQNVNNYGKR--------- 189 (420)
T ss_pred cCCCCCCCCcCCccccc--CCCC---CCCHHHHHHHHHHHH----HC--C----CcEEEEeeeccccccCC---------
Confidence 34699999999877533 3222 258999999886432 21 3 56788854 3333320
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecC-CCCCCccHHHHHHHHHhc-CCc-EEEE-cCCC--CHHHHhhcCC----
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIMYPEINTLVDELHRR-RIS-TFLV-TNAQ--FPDKIKLLKP---- 502 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlLyp~L~elI~~lk~~-gi~-~~Lv-TNGt--lpe~l~~L~~---- 502 (534)
+.+ .+. ..|.+|++.+.+. |+. +.+. +|.. -++.++.+..
T Consensus 190 ----------------------------~~~~~~~--~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~~~~~~ 239 (420)
T PRK14339 190 ----------------------------FSSEHEK--VDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFAKNPKI 239 (420)
T ss_pred ----------------------------CcCCccc--ccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHHcCCCc
Confidence 000 000 1356666666553 542 3332 1211 1444554442
Q ss_pred CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 503 VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 503 v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
...+.+.+++.+.+.+++++|+..
T Consensus 240 ~~~l~iglQSgsd~vLk~M~R~~t 263 (420)
T PRK14339 240 CKSIHMPLQSGSSEILKAMKRGYT 263 (420)
T ss_pred cCceEeCCccCCHHHHHhccCCCC
Confidence 468999999999999999999854
No 181
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=94.08 E-value=0.18 Score=54.62 Aligned_cols=115 Identities=18% Similarity=0.290 Sum_probs=66.9
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeee--ccccccccccccccCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLL--DFFYFGTVSSAIDKQIP 432 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~--~~~~~~~~~~~~~~~~~ 432 (534)
+.-|+++|.||-.+... | . ....+|++|++++..+ ++. | +.+|+|+ |++.||.
T Consensus 140 srGC~~~CsfC~ip~~~--G-~--~rsr~~e~Vl~Ei~~l----~~~--G----~~ei~l~g~d~~~yg~---------- 194 (420)
T TIGR01578 140 NQGCLGNCSYCITKHAR--G-K--LASYPPEKIVEKARQL----VAE--G----CKEIWITSQDTGAYGR---------- 194 (420)
T ss_pred ccCCCCCCCCCccccCC--C-C--cccCCHHHHHHHHHHH----HHC--C----CeEEEEEeeccccccC----------
Confidence 44699999999886543 2 2 2346899999988653 221 3 4567774 3333321
Q ss_pred CCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-C-CcEEEEc-C-C----CCHHHHhhcC-C-
Q 038595 433 SNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-R-ISTFLVT-N-A----QFPDKIKLLK-P- 502 (534)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-g-i~~~LvT-N-G----tlpe~l~~L~-~- 502 (534)
+. ...+.+|++.+.+. + ..+.+.+ | . ..++.++.+. +
T Consensus 195 --------------------------------d~-~~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~~~~~ 241 (420)
T TIGR01578 195 --------------------------------DI-GSRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVYQHEK 241 (420)
T ss_pred --------------------------------CC-CcCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHHhccc
Confidence 10 12356666666553 2 2233221 1 1 1133333332 1
Q ss_pred -CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595 503 -VTQLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 503 -v~qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
...+.+.+++.+.+.+++++|+...
T Consensus 242 ~~~~l~iglQSgsd~iL~~m~R~~~~ 267 (420)
T TIGR01578 242 VYKFLHLPVQSGSDSVLKEMKREYTV 267 (420)
T ss_pred ccCceEeCCccCCHHHHHhcCCCCCH
Confidence 3678999999999999999998543
No 182
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=94.06 E-value=0.3 Score=52.94 Aligned_cols=116 Identities=20% Similarity=0.334 Sum_probs=66.6
Q ss_pred ccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeec--cccccccccccccCCCC
Q 038595 356 LACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLD--FFYFGTVSSAIDKQIPS 433 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 433 (534)
.-|+++|.||--+... | . +...+|++|++++..+ .. .| |.+|+|+| +.-+|.-
T Consensus 148 rGC~~~CsFC~ip~~~--G-~--~rsr~~e~Iv~Ei~~l----~~--~g----~kei~l~~~n~~~yg~~---------- 202 (434)
T PRK14330 148 YGCNRFCTYCIVPYTR--G-R--EKSRPMEDILEEVEKL----AK--QG----YREVTFLGQNVDAYGKD---------- 202 (434)
T ss_pred cCCCCCCCCCceECcC--C-C--CccCCHHHHHHHHHHH----HH--CC----CcEEEEEEecccccccC----------
Confidence 4699999999875332 2 2 2468899999987543 22 13 45677754 2111210
Q ss_pred CCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhc-CCc-EEEEc-C--CCCHHHHhhcCC----Cc
Q 038595 434 NDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRR-RIS-TFLVT-N--AQFPDKIKLLKP----VT 504 (534)
Q Consensus 434 ~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~-gi~-~~LvT-N--Gtlpe~l~~L~~----v~ 504 (534)
+ +. .+.|.+|++.+.+. |+. +.+.+ + ...++.++.+.. +.
T Consensus 203 ---------------------------~-~~---~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~~~~~ 251 (434)
T PRK14330 203 ---------------------------L-KD---GSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSPKVAK 251 (434)
T ss_pred ---------------------------C-CC---CccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCCcccC
Confidence 0 00 12456666655443 443 22221 1 112444444432 46
Q ss_pred eEEEEeeCCCHHHHHhhcCCCCC
Q 038595 505 QLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 505 qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
.+.+.+++.+.+.++.++|+...
T Consensus 252 ~l~iglQSgsd~vLk~M~R~~~~ 274 (434)
T PRK14330 252 SIHLPVQSGSNRILKLMNRRYTR 274 (434)
T ss_pred ceecCcCCCCHHHHHhcCCCCCH
Confidence 79999999999999999998643
No 183
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=94.03 E-value=0.56 Score=45.18 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=76.7
Q ss_pred cEEEEEECccch--HHHHHHHHHHHHhhCCCc-eEEECCC----CCCcc--C-----------cCCCCeEEEEeccCCCC
Q 038595 69 KGKLFFISQTGT--SKTLAKRLHALLTSNDLL-FDLVDPQ----TYEPE--D-----------LSKEALVLIVASSWEDG 128 (534)
Q Consensus 69 kVlI~YgSqTGt--TE~lAe~La~~L~~~Gl~-v~V~dL~----d~d~~--d-----------L~~~~lvIfv~STYg~G 128 (534)
++++++||..=. +..+|+.+.+.|...+.. +..+++. +.+.+ + +...+.+||++|-|+ |
T Consensus 2 kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeYn-~ 80 (184)
T COG0431 2 KILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEYN-G 80 (184)
T ss_pred eEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCccC-C
Confidence 589999997644 568899999999877633 3332321 11111 1 124689999999999 6
Q ss_pred CCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 129 KPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 129 ~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
..|.-.+..++||-. ..+.++..++++.+-... +.-.+...+...|..+|+..+-
T Consensus 81 s~pg~lKnaiD~l~~---------~~~~~Kpv~~~~~s~g~~--~~~~a~~~Lr~vl~~~~~~~~~ 135 (184)
T COG0431 81 SYPGALKNAIDWLSR---------EALGGKPVLLLGTSGGGA--GGLRAQNQLRPVLSFLGARVIP 135 (184)
T ss_pred CCCHHHHHHHHhCCH---------hHhCCCcEEEEecCCCch--hHHHHHHHHHHHHHhcCceecc
Confidence 677778889999854 268899888887653332 2234566677777778876553
No 184
>PRK05481 lipoyl synthase; Provisional
Probab=93.90 E-value=0.46 Score=49.15 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=69.9
Q ss_pred eeeecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccc
Q 038595 349 CMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAID 428 (534)
Q Consensus 349 c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~ 428 (534)
.--+..+.-|+++|.||--+..++ . .-+|++|++++.++. . .| +.+|+|+
T Consensus 54 ~~fi~is~GC~~~C~FC~i~~~r~--~-----s~~~eeI~~ea~~l~-----~-~G----~kEI~L~------------- 103 (289)
T PRK05481 54 ATFMILGDICTRRCPFCDVATGRP--L-----PLDPDEPERVAEAVA-----R-MG----LKYVVIT------------- 103 (289)
T ss_pred EEEEEecccccCCCCCceeCCCCC--C-----CCCHHHHHHHHHHHH-----H-CC----CCEEEEE-------------
Confidence 344447888999999998776552 1 267888988886431 1 13 3566661
Q ss_pred cCCCCCCCCcccccccHHHhhhccCCceEEEeec-CC-CCC-CccHHHHHHHHHhc--CCcEEEEcCC-C-CHHHHhhcC
Q 038595 429 KQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLV-GE-PIM-YPEINTLVDELHRR--RISTFLVTNA-Q-FPDKIKLLK 501 (534)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~-GE-PlL-yp~L~elI~~lk~~--gi~~~LvTNG-t-lpe~l~~L~ 501 (534)
++. +. |.. ...+.++++.+++. ++.+.+.|-- . ..+.+..|.
T Consensus 104 -------------------------------gg~~~d~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~ 152 (289)
T PRK05481 104 -------------------------------SVDRDDLPDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVL 152 (289)
T ss_pred -------------------------------EeeCCCcccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHH
Confidence 000 00 111 13678888888874 5665555532 1 135555555
Q ss_pred C--CceEEEEeeCCCHHHHHhhcCCCCCchhhh
Q 038595 502 P--VTQLYVSVDAATKDSLKAIDRPLFGDFWER 532 (534)
Q Consensus 502 ~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~~ 532 (534)
. ...+..-++ +.++.+++++|+...+.|-+
T Consensus 153 ~ag~~i~~~~~e-ts~~vlk~m~r~~t~e~~le 184 (289)
T PRK05481 153 DARPDVFNHNLE-TVPRLYKRVRPGADYERSLE 184 (289)
T ss_pred hcCcceeecccc-ChHHHHHHhCCCCCHHHHHH
Confidence 3 233332233 35789999998655555543
No 185
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=93.81 E-value=0.35 Score=50.17 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=46.2
Q ss_pred cCCCCCCc--cHHHHHHHHHhcC--CcEEEEcCCCC--HHHHh---hcCC--C-ceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIMYP--EINTLVDELHRRR--ISTFLVTNAQF--PDKIK---LLKP--V-TQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlLyp--~L~elI~~lk~~g--i~~~LvTNGtl--pe~l~---~L~~--v-~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|.|+..| .|.++++.+++.. +.+.+.|+-.. ++.++ +|.. + ..+++-|++.+++++++|+|.+.
T Consensus 85 ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t 161 (302)
T TIGR01212 85 AYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHD 161 (302)
T ss_pred CCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcCh
Confidence 49999876 7999999998752 23445555442 34444 3433 4 46899999999999999999753
No 186
>PRK07360 FO synthase subunit 2; Reviewed
Probab=93.04 E-value=0.43 Score=50.94 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=66.1
Q ss_pred ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCC
Q 038595 352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQI 431 (534)
Q Consensus 352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (534)
+..|..|+++|.||--...+.....+ .-++++|++.+.+. ..+ |
T Consensus 64 i~~Tn~C~~~C~fC~~~~~~~~~~~y---~ls~eeI~~~a~~a-----~~~-G--------------------------- 107 (371)
T PRK07360 64 INFTNICEGHCGFCAFRRDEGDHGAF---WLTIAEILEKAAEA-----VKR-G--------------------------- 107 (371)
T ss_pred cccchhhhcCCccCCcccCCCCCCCe---eCCHHHHHHHHHHH-----HhC-C---------------------------
Confidence 44588999999999976443211222 25888999887543 221 3
Q ss_pred CCCCCCcccccccHHHhhhccCCceEEEeecC-CCCCC--ccHHHHHHHHHhc--CCcEEEE----------cCCCC-HH
Q 038595 432 PSNDGEEKEGGVTLERLNEGLTPRHCALSLVG-EPIMY--PEINTLVDELHRR--RISTFLV----------TNAQF-PD 495 (534)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~G-EPlLy--p~L~elI~~lk~~--gi~~~Lv----------TNGtl-pe 495 (534)
.+.+.|. .| .|.+. .++.++++.+|+. ++.+... +.|.. .+
T Consensus 108 ----------------------~~~i~l~-~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e 164 (371)
T PRK07360 108 ----------------------ATEVCIQ-GGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEE 164 (371)
T ss_pred ----------------------CCEEEEc-cCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHH
Confidence 2344455 35 56664 3688889999874 3444433 45766 46
Q ss_pred HHhhcCC--CceEE-EEeeCCCHHHHHhhc
Q 038595 496 KIKLLKP--VTQLY-VSVDAATKDSLKAID 522 (534)
Q Consensus 496 ~l~~L~~--v~qly-vSlDA~~~e~y~~I~ 522 (534)
.+++|.. ++.+. -+-...+++.+++++
T Consensus 165 ~l~~LkeAGld~~~~t~~e~l~~~vr~~i~ 194 (371)
T PRK07360 165 VLKALKDAGLDSMPGTAAEILVDEVRRIIC 194 (371)
T ss_pred HHHHHHHcCCCcCCCcchhhccHHHHHhhC
Confidence 6788875 66664 122233455555555
No 187
>PRK12928 lipoyl synthase; Provisional
Probab=92.95 E-value=0.37 Score=50.02 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHhc--CCcEEEEcCCC---CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCCCchhh
Q 038595 469 PEINTLVDELHRR--RISTFLVTNAQ---FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLFGDFWE 531 (534)
Q Consensus 469 p~L~elI~~lk~~--gi~~~LvTNGt---lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~~~~w~ 531 (534)
.++.++|+.+++. ++.+.+.|=.- ..+.++.|.. .+.+..=+.. .++.|++|++....+-|-
T Consensus 123 ~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag~~i~~hnlEt-~~~vl~~m~r~~t~e~~l 191 (290)
T PRK12928 123 AHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAKPDVFNHNLET-VPRLQKAVRRGADYQRSL 191 (290)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcCchhhcccCcC-cHHHHHHhCCCCCHHHHH
Confidence 3677888888876 35555554322 2455555543 2222211333 378899999865444443
No 188
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=92.93 E-value=0.34 Score=51.53 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=67.8
Q ss_pred cccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCC
Q 038595 355 SLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSN 434 (534)
Q Consensus 355 ~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (534)
+.-|+.+|.||.-.... .....+|+.+++++..+.++.++...-.-+ |.|.
T Consensus 205 ~RGCp~~C~FC~~~~~~------~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~--------~~f~--------------- 255 (490)
T COG1032 205 SRGCPRGCRFCSITKHF------KYRRRRPERVVEEIKELIEEGGKRVVFFVD--------DIFL--------------- 255 (490)
T ss_pred ccCCCCCCCCCCCcccc------cccCCCHHHHHHHHHHHHHHhhhcCccccc--------ceee---------------
Confidence 44699999999986432 223467778888888877776665432111 1111
Q ss_pred CCCcccccccHHHhhhccCCceEEEeecCC-CCCCccHHHHHHHHHhcCCc----EEEEcCCCCH-----HHHh-hcCC-
Q 038595 435 DGEEKEGGVTLERLNEGLTPRHCALSLVGE-PIMYPEINTLVDELHRRRIS----TFLVTNAQFP-----DKIK-LLKP- 502 (534)
Q Consensus 435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GE-PlLyp~L~elI~~lk~~gi~----~~LvTNGtlp-----e~l~-~L~~- 502 (534)
..+. +..++.+..+...+.+.+.. +....-...+ +.+. .+..
T Consensus 256 --------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~ 309 (490)
T COG1032 256 --------------------------YGSPALNDEKRFELLSLELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREA 309 (490)
T ss_pred --------------------------cCCccccchhhcccchHHHHHHhcccCceeeeeccccCchhcCHHHHHHHHhhC
Confidence 1111 34455555555555555442 2222221211 2222 2222
Q ss_pred -CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595 503 -VTQLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 503 -v~qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
...+++-+.+.+.+..+.+.+++..
T Consensus 310 g~~~~~iG~Esgs~~~l~~~~k~~~~ 335 (490)
T COG1032 310 GLRRVYIGIESGSEELLKKINKGITT 335 (490)
T ss_pred CCcceEEeccCCCHHHHHHHhCCCCh
Confidence 5779999999999999999988643
No 189
>PRK05926 hypothetical protein; Provisional
Probab=92.64 E-value=0.21 Score=53.61 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=70.2
Q ss_pred eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595 351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ 430 (534)
Q Consensus 351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~ 430 (534)
.+.+|+.|.++|.||--+..+.... ...-+|++|++.+.+. . .|.
T Consensus 71 nin~Tn~C~~dC~FCaf~~~~~~~~---~~~ls~eeI~~~a~~a------~-~G~------------------------- 115 (370)
T PRK05926 71 YLYPTNFCQFNCTFCSFYAKPGDPK---GWFYTPDQLVQSIKEN------P-SPI------------------------- 115 (370)
T ss_pred eeecCCCCCCCCCccccccCCCCcc---cccCCHHHHHHHHHHH------h-cCC-------------------------
Confidence 3457899999999999665543322 2357899999988642 1 232
Q ss_pred CCCCCCCcccccccHHHhhhccCCceEEEeecCCC-CC-CccHHHHHHHHHhc--CCcEEEEc-----------CCCCHH
Q 038595 431 IPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEP-IM-YPEINTLVDELHRR--RISTFLVT-----------NAQFPD 495 (534)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEP-lL-yp~L~elI~~lk~~--gi~~~LvT-----------NGtlpe 495 (534)
+.+.|.. |+. -+ +.++.++++.+|+. ++.+.-.| +-+..+
T Consensus 116 ------------------------~ei~iv~-G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e 170 (370)
T PRK05926 116 ------------------------TETHIVA-GCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKE 170 (370)
T ss_pred ------------------------CEEEEEe-CcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHH
Confidence 2223332 443 22 24677888888876 45544333 223467
Q ss_pred HHhhcCC--CceEEE-EeeCCCHHHHHhhc
Q 038595 496 KIKLLKP--VTQLYV-SVDAATKDSLKAID 522 (534)
Q Consensus 496 ~l~~L~~--v~qlyv-SlDA~~~e~y~~I~ 522 (534)
++++|.. ++.+.- ..+..+++.+++++
T Consensus 171 ~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~ 200 (370)
T PRK05926 171 VLQTLKIAGLDSIPGGGAEILVDEIRETLA 200 (370)
T ss_pred HHHHHHHcCcCccCCCCchhcCHHHHHhhC
Confidence 7888876 666654 47777888888777
No 190
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=92.51 E-value=0.36 Score=52.72 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=71.0
Q ss_pred cccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeecc--ccccccccccccCCCCC
Q 038595 357 ACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDF--FYFGTVSSAIDKQIPSN 434 (534)
Q Consensus 357 ~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 434 (534)
-|+++|.||--+... |. ....+|++|++++..+ +. +| |.+|+|+|- -.+|.
T Consensus 157 GC~~~CsFC~ip~~r--G~---~rsr~~e~V~~Ei~~l----~~--~g----~kei~l~~~~~~~yg~------------ 209 (448)
T PRK14333 157 GCNERCTYCVVPSVR--GK---EQSRTPEAIRAEIEEL----AA--QG----YKEITLLGQNIDAYGR------------ 209 (448)
T ss_pred CCCCCCCCCceeccc--CC---CcccCHHHHHHHHHHH----HH--CC----CcEEEEEecccchhcC------------
Confidence 699999999775432 21 1235788999887533 22 23 456777541 00010
Q ss_pred CCCcccccccHHHhhhccCCceEEEeecCCCCC--CccHHHHHHHHHhc-CCc-EEEE-cCCC-C-HHHHhhcCC----C
Q 038595 435 DGEEKEGGVTLERLNEGLTPRHCALSLVGEPIM--YPEINTLVDELHRR-RIS-TFLV-TNAQ-F-PDKIKLLKP----V 503 (534)
Q Consensus 435 ~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlL--yp~L~elI~~lk~~-gi~-~~Lv-TNGt-l-pe~l~~L~~----v 503 (534)
+ + ..+.|.. ...|.++++.+++. |+. +.+. .|-. + ++.++.+.. +
T Consensus 210 --------------------d---~-~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~eli~~~~~~~~~~ 265 (448)
T PRK14333 210 --------------------D---L-PGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTERLIKACAELPKVC 265 (448)
T ss_pred --------------------C---C-CCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhhHHHHHHHhcCCccc
Confidence 0 0 0133433 23678888888774 543 3331 1211 1 344444432 5
Q ss_pred ceEEEEeeCCCHHHHHhhcCCCCCchh
Q 038595 504 TQLYVSVDAATKDSLKAIDRPLFGDFW 530 (534)
Q Consensus 504 ~qlyvSlDA~~~e~y~~I~rP~~~~~w 530 (534)
..+.+.+++.+.+.++.++|....+-+
T Consensus 266 ~~l~igiQSgsd~vLk~m~R~~t~e~~ 292 (448)
T PRK14333 266 EHFHIPFQSGDNEILKAMARGYTHEKY 292 (448)
T ss_pred ccccCCCccCCHHHHHhcCCCCCHHHH
Confidence 778999999999999999998654433
No 191
>PRK00955 hypothetical protein; Provisional
Probab=92.49 E-value=0.41 Score=54.71 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=40.0
Q ss_pred ccHHHHHHHHHhc-CCc-EEEEcCC------CC---HHHHhhcCC--C-ceEEEEeeCCCHHHHHhhcCCCC
Q 038595 469 PEINTLVDELHRR-RIS-TFLVTNA------QF---PDKIKLLKP--V-TQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 469 p~L~elI~~lk~~-gi~-~~LvTNG------tl---pe~l~~L~~--v-~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
..+.+|++.+++. |++ ++ ++.| .. .+.+++|.. + -+|.|.+...+.+.++.++||..
T Consensus 387 ~~l~~LLr~l~~l~gvkrv~-isSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~ 457 (620)
T PRK00955 387 KEYLELLRKVRKLPGVKKVF-IRSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSR 457 (620)
T ss_pred HHHHHHHHHHhccCCceEEE-eecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCH
Confidence 4678888888875 664 44 4443 11 235666654 2 48999999999999999999953
No 192
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=92.26 E-value=0.93 Score=44.23 Aligned_cols=124 Identities=15% Similarity=0.057 Sum_probs=82.2
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC---------------------CCccCcCCCCeEEEEeccCCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT---------------------YEPEDLSKEALVLIVASSWED 127 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d---------------------~d~~dL~~~~lvIfv~STYg~ 127 (534)
+|.|+|-|.+|.-..+|+...+.+...|-++++..+.+ +.++.|.+++.++|+.||--
T Consensus 3 kv~iv~ys~yghv~~lAe~~kkGie~a~geA~i~qVpEtl~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~PTRf- 81 (203)
T KOG3135|consen 3 KVAIVIYSTYGHVAKLAEAEKKGIESAGGEATIYQVPETLSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFPTRF- 81 (203)
T ss_pred eEEEEEEEcccHHHHHHHHHHhhhhccCCeeEEEEcccccCHHHHHHhcCCCCCccCCccCHHHHhhccceeecccccc-
Confidence 58999999999999999999999887655666555533 22333556889999999987
Q ss_pred CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEee
Q 038595 128 GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGD 200 (534)
Q Consensus 128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD 200 (534)
|.+|..++.||+.--.+ ++ +..|.|+..++|=++-+.-+ .--..+...-..|.-.| -.++|+|.-+
T Consensus 82 G~~~AQ~kaF~D~TggL---W~--~~aL~GK~AG~F~Stgs~gG-gqE~talta~t~LvHHG-mifVPlGYkn 147 (203)
T KOG3135|consen 82 GNMPAQWKAFWDSTGGL---WA--KGALAGKPAGIFVSTGSQGG-GQETTALTAITQLVHHG-MIFVPLGYKN 147 (203)
T ss_pred cCcHHHHHHHHhccCch---hh--hccccCCceeEEEeccCCCC-chHhHHHHHHHHHHhcc-eEEEecccch
Confidence 89999888998752211 11 45789999999966544332 11112223233344445 3455777643
No 193
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=92.24 E-value=0.67 Score=52.05 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=33.8
Q ss_pred cEEEEcCCCC--HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 484 STFLVTNAQF--PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 484 ~~~LvTNGtl--pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.+.+.||-.. ++.++.|.. ++.+.+-|+..+.+.++.|+|.+.
T Consensus 194 gitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght 240 (522)
T TIGR01211 194 GLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRGHT 240 (522)
T ss_pred EEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCC
Confidence 3445666543 677777775 899999999999999999999763
No 194
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=91.63 E-value=2.5 Score=44.20 Aligned_cols=63 Identities=16% Similarity=0.336 Sum_probs=46.2
Q ss_pred CCCCCc--cHHHHHHHHHhcC-C-cEEEEcCCCC--HHHHhhcCC--Cc-eEEEEeeCCCHHHHH-hhcCCCC
Q 038595 464 EPIMYP--EINTLVDELHRRR-I-STFLVTNAQF--PDKIKLLKP--VT-QLYVSVDAATKDSLK-AIDRPLF 526 (534)
Q Consensus 464 EPlLyp--~L~elI~~lk~~g-i-~~~LvTNGtl--pe~l~~L~~--v~-qlyvSlDA~~~e~y~-~I~rP~~ 526 (534)
.|...| .+.++++.+++.+ + .+.+.|+... ++.++.|.. +. .|++-+++.+.+..+ .|++++.
T Consensus 81 D~~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t 153 (313)
T TIGR01210 81 DDREVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRKIGVNVEVAVGLETANDRIREKSINKGST 153 (313)
T ss_pred CcCcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCC
Confidence 555554 6778888888765 3 3566666643 677777765 65 799999999999995 7998863
No 195
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=91.23 E-value=0.63 Score=50.66 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=55.9
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcC----Cc-EEEEcCCC-CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRR----IS-TFLVTNAQ-FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDR 523 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~g----i~-~~LvTNGt-lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~r 523 (534)
-+..|..|.+.-||++.+.++.+...+ +. +|+-.||- +++..+.|.. |+.||+||-+.||+.=++..|
T Consensus 81 ~~~~~~~~d~~c~p~le~~~~r~~~~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~ 156 (414)
T COG1625 81 GAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMK 156 (414)
T ss_pred ceeecCCCCcccCcchhhhhhHHHhhcCCccceeeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhc
Confidence 456677899999999999999999987 32 67778875 4777777775 999999999999998776654
No 196
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=90.99 E-value=1.3 Score=48.66 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.7
Q ss_pred CceEEEEeeCCCHHHHHhhcCCCCC
Q 038595 503 VTQLYVSVDAATKDSLKAIDRPLFG 527 (534)
Q Consensus 503 v~qlyvSlDA~~~e~y~~I~rP~~~ 527 (534)
+..+.+.+.+.+.+.++.++|+...
T Consensus 268 c~~l~iglQSgsd~vLk~m~R~~t~ 292 (455)
T PRK14335 268 CRLVHLPVQHGSNGVLKRMNRSYTR 292 (455)
T ss_pred CCeEEEccCcCCHHHHHHcCCCCCH
Confidence 6889999999999999999997543
No 197
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=90.06 E-value=2.3 Score=44.60 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=49.5
Q ss_pred CceEEEeecCCCCCCcc-----HHHHHHHHHhcCCcEEEEcCCCC----HHHHhhcCC--CceEEEEeeCCCHHHHHhh
Q 038595 454 PRHCALSLVGEPIMYPE-----INTLVDELHRRRISTFLVTNAQF----PDKIKLLKP--VTQLYVSVDAATKDSLKAI 521 (534)
Q Consensus 454 ~~h~alSl~GEPlLyp~-----L~elI~~lk~~gi~~~LvTNGtl----pe~l~~L~~--v~qlyvSlDA~~~e~y~~I 521 (534)
+.++++|-+-+|..-.+ ...+++.+.+.|.++.++|=+.+ -+.+.++.+ ...+.|||...+.+.-+.+
T Consensus 83 ~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~ 161 (297)
T COG1533 83 RTVIAISSVTDPYQPIEKEYRLTRKILEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKIL 161 (297)
T ss_pred ceEEEEecCCCCCCcchHHHHHHHHHHHHHHHcCCcEEEEECCcchhhhHHHHHhhhhccceEEEEEeecCcHHHHHhc
Confidence 45788888888888632 33455666677999999999996 466666655 4779999999887754443
No 198
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=90.04 E-value=0.32 Score=51.36 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=55.2
Q ss_pred ceEEEeecCCCCCCccHHHHHHHHH-hcCCcEEEE---cCCCCHHHHhhcC--CCceEEEEeeCCCHHHHHhhcCCCC-C
Q 038595 455 RHCALSLVGEPIMYPEINTLVDELH-RRRISTFLV---TNAQFPDKIKLLK--PVTQLYVSVDAATKDSLKAIDRPLF-G 527 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~L~elI~~lk-~~gi~~~Lv---TNGtlpe~l~~L~--~v~qlyvSlDA~~~e~y~~I~rP~~-~ 527 (534)
+.+.|+..-+|=.-+++...++.+| ..|..++|- |--.+-+.+.+-. +.+.+.|-+||++++.|++|.++-. .
T Consensus 88 ~rici~~i~~p~~~~d~~~i~~~~~~~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~ 167 (339)
T COG2516 88 KRICIQQIAYPRALNDLKLILERLHIRLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSP 167 (339)
T ss_pred ccccceeeccccccchhhhhhhhhhhccCCceehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccCCC
Confidence 3456677788999999999999999 678776653 3333333333222 3688999999999999999976643 2
Q ss_pred chhhh
Q 038595 528 DFWER 532 (534)
Q Consensus 528 ~~w~~ 532 (534)
..|||
T Consensus 168 ~S~e~ 172 (339)
T COG2516 168 HSWER 172 (339)
T ss_pred CcHHH
Confidence 45555
No 199
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=90.00 E-value=2.7 Score=45.86 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=52.9
Q ss_pred cCCCCCCc--cHHHHHHHHHhc-C-----CcEEEEcCCC-C-HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 462 VGEPIMYP--EINTLVDELHRR-R-----ISTFLVTNAQ-F-PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 462 ~GEPlLyp--~L~elI~~lk~~-g-----i~~~LvTNGt-l-pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.|.|++-. .|..++..+++. + .-+.+..|=. + .+.++.+.. +.++.+=|.+-|.+..+++.|.+.
T Consensus 95 GGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~ 171 (416)
T COG0635 95 GGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHD 171 (416)
T ss_pred CCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHhcCCCC
Confidence 49999953 789999999865 2 4477888844 4 778887775 899999999999999999999764
No 200
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=89.00 E-value=8.3 Score=37.85 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=89.5
Q ss_pred cEEEEEECcc-chHHHHHHHHHHHHhhCCCceEEECCC-----------C--CCcc------CcCCCCeEEEEeccCCCC
Q 038595 69 KGKLFFISQT-GTSKTLAKRLHALLTSNDLLFDLVDPQ-----------T--YEPE------DLSKEALVLIVASSWEDG 128 (534)
Q Consensus 69 kVlI~YgSqT-GtTE~lAe~La~~L~~~Gl~v~V~dL~-----------d--~d~~------dL~~~~lvIfv~STYg~G 128 (534)
+++|+|+--- .-+..+++...+.+.+.|+++...|+. | +.++ .+...+.+||+-|-|-.|
T Consensus 2 kiLii~aHP~~sf~~~~~~~~~~~~n~~~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlwW~~ 81 (189)
T COG2249 2 KILIIYAHPNESFTHALSDAALERLNEAGHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLWWYS 81 (189)
T ss_pred cEEEEEeCchhhhhHHHHHHHHHHHHHcchHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCchhcc
Confidence 4899999885 444455555556666666554443332 1 1110 134568999999999977
Q ss_pred CCchHHHHHHHHHHhhcCcccccc----cCCCCCeEEEEE-ecCcchHHHHHHHHH---------HHHHHHHHcCCceec
Q 038595 129 KPPEAAKFFMNWIDESANDFRVGS----LLLSNCKFAVFG-VGSKSYEKTFNMVAK---------DLSKKMRELGAGEVL 194 (534)
Q Consensus 129 ~pPdna~~Fle~L~e~~~DFRv~~----~~Lkgl~yAVFG-LGDs~Y~e~Fc~aAK---------~LDk~L~kLGA~rV~ 194 (534)
.|+ -.+.+++..-..--.+..+. ..|+|+++-++. .|... +.|...+. .+.-.+..+|...+-
T Consensus 82 ~Pa-iLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~--~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~~ 158 (189)
T COG2249 82 MPA-LLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPE--EAYREGGGNFFEGVLLDPLYGTFHYCGLGWLP 158 (189)
T ss_pred CcH-HHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCH--HHHhhcccCcccccccchhHHHHHHcCCcccc
Confidence 664 45555554432221122222 679999887765 44432 12322222 233456667877776
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHHHHHHhc
Q 038595 195 PVVEGDVDGGELDVVFEDWSKRVVAILKSG 224 (534)
Q Consensus 195 plg~gD~~~g~~e~~f~eW~~~L~~~L~~~ 224 (534)
+....+...- .++....|.+++...|...
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 159 PFTFYGADVI-DDETRAAYLERYRAHLKEI 187 (189)
T ss_pred ceeEeecccC-CHHHHHHHHHHHHHHHHhh
Confidence 6666665542 3678999999988887653
No 201
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=87.34 E-value=1 Score=43.08 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=42.8
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH---HhhcC--C-CceEEEEeeC----CCHHHHHhhcCC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLLK--P-VTQLYVSVDA----ATKDSLKAIDRP 524 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L~--~-v~qlyvSlDA----~~~e~y~~I~rP 524 (534)
..++|.+.++++.|++.|+++.++||+..... ++.+- . .+.++.+=|. |+++.|..+.+-
T Consensus 93 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~ 162 (221)
T TIGR02253 93 LRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKR 162 (221)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHH
Confidence 45799999999999999999999999975432 33221 1 4555555443 677888777654
No 202
>PRK05927 hypothetical protein; Provisional
Probab=86.15 E-value=1.3 Score=47.23 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=26.4
Q ss_pred cccccccccccccccCCCCCCCCcccccCCChHHHHHHHHH
Q 038595 353 TPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAID 393 (534)
Q Consensus 353 ~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~ 393 (534)
..|..|+++|.||-....+..... ..-++++|++.+.+
T Consensus 50 ~~Tn~C~~~C~fCaf~~~~~~~~~---y~ls~eei~~~a~~ 87 (350)
T PRK05927 50 NYTNICKIDCTFCAFYRKPHSSDA---YLLSFDEFRSLMQR 87 (350)
T ss_pred ccchhhhcCCccCCccCCCCCccc---cccCHHHHHHHHHH
Confidence 448889999999998754322122 24588899888754
No 203
>PRK06769 hypothetical protein; Validated
Probab=85.76 E-value=1.4 Score=41.74 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=42.6
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCC--------HHHHhhcC--CCceEEEEee---------CCCHHHHHhhcC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQF--------PDKIKLLK--PVTQLYVSVD---------AATKDSLKAIDR 523 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl--------pe~l~~L~--~v~qlyvSlD---------A~~~e~y~~I~r 523 (534)
+...+||...++++.||++|++++++||... ......|. .++..+++.. -|+++.|.++.+
T Consensus 25 ~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 25 GSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred HHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 4455799999999999999999999999863 11222222 2566666543 567777777654
No 204
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=85.66 E-value=1.5 Score=41.89 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=43.1
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH--HHhh-----cCC-CceEEEEee----CCCHHHHHhhcC
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFPD--KIKL-----LKP-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe--~l~~-----L~~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
..-+||.+.++++.||++|+++.++||+.... .... +.. .+.++.|-+ -|+++.|..+.+
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 163 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLE 163 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHH
Confidence 45578999999999999999999999987432 2211 222 566777754 477888877654
No 205
>PRK09234 fbiC FO synthase; Reviewed
Probab=85.30 E-value=1.1 Score=52.95 Aligned_cols=126 Identities=14% Similarity=0.140 Sum_probs=68.6
Q ss_pred eecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccC
Q 038595 351 EATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQ 430 (534)
Q Consensus 351 ~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~ 430 (534)
-+..|+.|.++|.||--...+... ...+-+|++|++.+.+..+. |. .+++|
T Consensus 74 ~In~Tn~C~~~C~YCaF~~~~~~~---~~~~ls~eEIl~~a~~~~~~------G~----~e~l~---------------- 124 (843)
T PRK09234 74 FIPLTRLCRDRCHYCTFATVPGKL---EAAYLSPDEVLDIARAGAAA------GC----KEALF---------------- 124 (843)
T ss_pred EecCCCCCCCCCCcCCCccCCCCC---ccccCCHHHHHHHHHHHHHC------CC----CEEEE----------------
Confidence 345699999999999876443211 23456899999988654221 21 22332
Q ss_pred CCCCCCCcccccccHH-HhhhccCCceEEEeecCCCCCCccHHHHHHHHHh-cCCcEEEEcCCCC-HHHHhhcCC--Cce
Q 038595 431 IPSNDGEEKEGGVTLE-RLNEGLTPRHCALSLVGEPIMYPEINTLVDELHR-RRISTFLVTNAQF-PDKIKLLKP--VTQ 505 (534)
Q Consensus 431 ~~~~~~~~~~~~~~~~-~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~-~gi~~~LvTNGtl-pe~l~~L~~--v~q 505 (534)
.+|..++ ++.++ +-.|...|=.....++.++++.+|+ .|+...+.- |.+ ++.++.|.+ ++
T Consensus 125 ---------t~G~~P~~~~~~~----~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~-G~ls~~E~~~Lk~~g~s- 189 (843)
T PRK09234 125 ---------TLGDRPEDRWPEA----REWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNP-GVMSWSELARLKPVAPS- 189 (843)
T ss_pred ---------ecCCCCccccccc----cccccccccccHHHHHHHHHHHHHHhcCCCceeee-CCCCHHHHHHHHHhcCc-
Confidence 1222222 11110 0112333433333678888998886 465443322 444 788888876 33
Q ss_pred EEEEeeCCCHHHHHh
Q 038595 506 LYVSVDAATKDSLKA 520 (534)
Q Consensus 506 lyvSlDA~~~e~y~~ 520 (534)
..+++...++..|+.
T Consensus 190 ~gl~lEt~~~~l~~~ 204 (843)
T PRK09234 190 MGMMLETTSRRLFEE 204 (843)
T ss_pred CCCCHHHHHHHHHHh
Confidence 355555555555554
No 206
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=84.75 E-value=6 Score=40.48 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC--------c-CCCCeEEEEec-cCCCCCCchHHHHHHHHHHhhcCcccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED--------L-SKEALVLIVAS-SWEDGKPPEAAKFFMNWIDESANDFRV 150 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d--------L-~~~~lvIfv~S-TYg~G~pPdna~~Fle~L~e~~~DFRv 150 (534)
...+|++|.+.+.+.|+++..++-.+...+. + ++.++-++.++ ... ...|.....|=+.|.+...+
T Consensus 86 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l~~--- 161 (268)
T cd07371 86 DVELAEACVEEGRKAGLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKATRD--- 161 (268)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHHHH---
Confidence 5679999999999999998876555553333 1 23343333333 222 33455555666666543211
Q ss_pred cccCCCCCeEEEEEecCcchH---H--------HHHHHHHHHHHHHHHc
Q 038595 151 GSLLLSNCKFAVFGVGSKSYE---K--------TFNMVAKDLSKKMREL 188 (534)
Q Consensus 151 ~~~~Lkgl~yAVFGLGDs~Y~---e--------~Fc~aAK~LDk~L~kL 188 (534)
.+++++|+|+|+.+.. + .|...++.+|+++.++
T Consensus 162 -----~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 162 -----AGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred -----cCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 2579999999998642 1 2335677777776554
No 207
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=83.85 E-value=1.8 Score=41.00 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=33.9
Q ss_pred cCCceEEEeecC--------CCC---------CCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 452 LTPRHCALSLVG--------EPI---------MYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 452 ~~~~h~alSl~G--------EPl---------Lyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
|+.+.+++.+.| .|. +||.+.++++.|++.|+++.++||+..
T Consensus 11 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 11 PQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred CcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence 455666666655 344 789999999999999999999999875
No 208
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=83.79 E-value=1.8 Score=38.42 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=27.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
++-.+||.+.++++.|++.|+++.++||+.
T Consensus 22 ~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 22 DERILYPEVPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred HHheeCCCHHHHHHHHHHCCCEEEEEECCc
Confidence 566789999999999999999999999987
No 209
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=82.30 E-value=3.1 Score=39.42 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=42.1
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCH--HHHhhcC--C-CceEEEEeeC----CCHHHHHhhcC
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFP--DKIKLLK--P-VTQLYVSVDA----ATKDSLKAIDR 523 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlp--e~l~~L~--~-v~qlyvSlDA----~~~e~y~~I~r 523 (534)
.++|...++++.|+++|+++.++||+... ..++.+- . .+.++.|-+. |+++.|..+.+
T Consensus 105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~ 171 (203)
T TIGR02252 105 QVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALE 171 (203)
T ss_pred eeCcCHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHH
Confidence 57899999999999999999999998742 2333321 1 4667766553 67777876654
No 210
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=82.26 E-value=4 Score=38.57 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=50.4
Q ss_pred ccHHHhhhccCCceEEEeec------CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC-CceE-EEEeeCCC
Q 038595 443 VTLERLNEGLTPRHCALSLV------GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP-VTQL-YVSVDAAT 514 (534)
Q Consensus 443 ~~~~~~~ea~~~~h~alSl~------GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~-v~ql-yvSlDA~~ 514 (534)
++.+.+.+ ..++.+.+-+. +.-.+||.+.++++.+++.|+.++++||+........+.. .... +...--|+
T Consensus 15 i~~~~~~~-~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~~~~KP~ 93 (170)
T TIGR01668 15 LTIDLLKK-VGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLPHAVKPP 93 (170)
T ss_pred CCHHHHHH-CCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEcCCCCCC
Confidence 67777765 35666666553 3335789999999999999999999999973232222221 1111 11112456
Q ss_pred HHHHHhhcC
Q 038595 515 KDSLKAIDR 523 (534)
Q Consensus 515 ~e~y~~I~r 523 (534)
++.|..+.+
T Consensus 94 p~~~~~~l~ 102 (170)
T TIGR01668 94 GCAFRRAHP 102 (170)
T ss_pred hHHHHHHHH
Confidence 777766544
No 211
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=82.08 E-value=2.5 Score=41.58 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=42.7
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--CC-CceEEEEeeC----CCHHHHHhhcC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--KP-VTQLYVSVDA----ATKDSLKAIDR 523 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~~-v~qlyvSlDA----~~~e~y~~I~r 523 (534)
-+..++|.+.++++.||++|+++.++||+.... .++.+ .+ .+.+..|=+. |+++.|..+.+
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~ 160 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAE 160 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHH
Confidence 335679999999999999999999999998633 23322 22 4555555443 66777877644
No 212
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=81.62 E-value=3.4 Score=38.19 Aligned_cols=59 Identities=17% Similarity=0.290 Sum_probs=40.6
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcC--C-CceEEEEee----CCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLK--P-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~--~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
+.++|.+.++++.||++|+++.++||+.. ...++.+- . ++.+.-|-+ -|+++.|..+.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~ 152 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASKNAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAE 152 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHH
Confidence 46799999999999999999999999865 33343332 1 333332322 467777777654
No 213
>PTZ00413 lipoate synthase; Provisional
Probab=81.02 E-value=8.8 Score=41.91 Aligned_cols=150 Identities=14% Similarity=0.222 Sum_probs=88.1
Q ss_pred HHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccce-eeeccCCeeeeecccccccccccccccCCCCCCCCccc
Q 038595 300 PVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHS-FYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQ 378 (534)
Q Consensus 300 ~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~-fygi~s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~ 378 (534)
..+++.|++.+-+-|-.-. .| -..|-|+.+. =-|-..---|-| -..|.-+|-||-..+..+.
T Consensus 112 ~~~~~~~~~~~L~TVCeea---~C-------PNi~EC~~~~~~~~~~tATfmil--G~~CTr~C~FCaqstg~~p----- 174 (398)
T PTZ00413 112 NRIRRSMREKKLHTVCEEA---KC-------PNIGECWGGGDEEGTATATIMVM--GDHCTRGCRFCSVKTSRKP----- 174 (398)
T ss_pred HHHHHHHHhCCCceeeCCC---CC-------CChHHHhCCCCCCCCceeEeeec--CCCCCCCCCCCCCCCCCCC-----
Confidence 3457777777777665211 12 2556677653 111111112222 2369999999999764421
Q ss_pred ccCCChHHHHHHHHHHHHHHhhcccCCCCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCceEE
Q 038595 379 WKMDDPIEIVNTAIDLHAKMIKQMKGVPGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCA 458 (534)
Q Consensus 379 ~~~~~p~~i~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~a 458 (534)
..-||+|+++.|.. ++.+ | .+|+.
T Consensus 175 -~~lD~eEp~~vA~a-----v~~~-G-------------------------------------------------l~~~V 198 (398)
T PTZ00413 175 -PPLDPNEPEKVAKA-----VAEM-G-------------------------------------------------VDYIV 198 (398)
T ss_pred -CCCCHHHHHHHHHH-----HHHc-C-------------------------------------------------CCEEE
Confidence 23588999988753 2322 2 23444
Q ss_pred Eeec-CCCCCC---ccHHHHHHHHHhc--CCcEEEEcCCC---CHHHHhhcCC--CceEEEEeeCCCHHHHHhhcCC
Q 038595 459 LSLV-GEPIMY---PEINTLVDELHRR--RISTFLVTNAQ---FPDKIKLLKP--VTQLYVSVDAATKDSLKAIDRP 524 (534)
Q Consensus 459 lSl~-GEPlLy---p~L~elI~~lk~~--gi~~~LvTNGt---lpe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP 524 (534)
|.-+ +..+-. .++.+.|+.+|+. ++.+.+.+ |. .++.++.|.. ++.+.--|+. .+..|.+|+.|
T Consensus 199 VTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~Ievli-gDf~g~~e~l~~L~eAG~dvynHNLET-v~rLyp~VRt~ 273 (398)
T PTZ00413 199 MTMVDRDDLPDGGASHVARCVELIKESNPELLLEALV-GDFHGDLKSVEKLANSPLSVYAHNIEC-VERITPYVRDR 273 (398)
T ss_pred EEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcC-CccccCHHHHHHHHhcCCCEEeccccc-CHhHHHHHccC
Confidence 4433 322322 3677888888875 45554443 22 2577777775 7888888888 78889999964
No 214
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=80.88 E-value=2.3 Score=40.26 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=40.4
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH---Hhhc--CC-CceEEEEee----CCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLL--KP-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L--~~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
..++|...++++.|+++|+++.++||+..... ++.+ .. .+.++.|=+ -|+++.|..+.+
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~ 159 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALE 159 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHH
Confidence 35789999999999999999999999986432 3322 11 344444432 356777776543
No 215
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=80.76 E-value=0.64 Score=51.55 Aligned_cols=64 Identities=22% Similarity=0.304 Sum_probs=54.4
Q ss_pred EEEecCcchH-----HHHHHHHHHHHHHHHHcCCceecceEEeeCCC-CCcHHHHHHHHHHHHHHHHhcC
Q 038595 162 VFGVGSKSYE-----KTFNMVAKDLSKKMRELGAGEVLPVVEGDVDG-GELDVVFEDWSKRVVAILKSGG 225 (534)
Q Consensus 162 VFGLGDs~Y~-----e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~-g~~e~~f~eW~~~L~~~L~~~~ 225 (534)
|||+||+.|. ..|++..|.+..+|..|+|....+++.|++++ +........|.-.||++|....
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~~ 70 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKGI 70 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCCC
Confidence 6899999764 37899999999999999999999999988864 3567888999999999996543
No 216
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=79.66 E-value=3.3 Score=46.03 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHhhcCC--CceEEEEeeCCCHHHHHhhcCCCC
Q 038595 494 PDKIKLLKP--VTQLYVSVDAATKDSLKAIDRPLF 526 (534)
Q Consensus 494 pe~l~~L~~--v~qlyvSlDA~~~e~y~~I~rP~~ 526 (534)
.+.+.+|+. +|.+-+-|+..+.+.+++.+|.+-
T Consensus 198 ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHt 232 (515)
T COG1243 198 EEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHT 232 (515)
T ss_pred HHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCcc
Confidence 356777775 899999999999999999999763
No 217
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=79.53 E-value=1.7 Score=40.74 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=35.5
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLK 501 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~ 501 (534)
-||++|+++..++..||+.|++....+|+-.|+.+.+.+
T Consensus 41 ~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L 79 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL 79 (144)
T ss_pred ceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH
Confidence 589999999999999999999999999999998876554
No 218
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=78.83 E-value=4.2 Score=38.79 Aligned_cols=57 Identities=12% Similarity=0.254 Sum_probs=41.6
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCCCHHH---H---hhcCC-CceEEEEeeC----CCHHHHHhhcC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQFPDK---I---KLLKP-VTQLYVSVDA----ATKDSLKAIDR 523 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l---~~L~~-v~qlyvSlDA----~~~e~y~~I~r 523 (534)
++|.+.++++.+|+.|+++.++||+..... + ..+.. .+.++.|=+. |+++.|..+.+
T Consensus 85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~ 152 (199)
T PRK09456 85 LRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ 152 (199)
T ss_pred cCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence 699999999999999999999999975321 1 12222 5667777553 77888876643
No 219
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=78.09 E-value=6.1 Score=36.19 Aligned_cols=59 Identities=19% Similarity=0.182 Sum_probs=40.9
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH--Hhhc--CC-CceEEEEee----CCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK--IKLL--KP-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~--l~~L--~~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
.-++|.+.++++.+++.|+++.++||+..... +.++ .. .+.+..|-+ -|+++.|..+.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~ 151 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDHAVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALK 151 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHH
Confidence 56799999999999999999999999997541 1111 11 355554422 366777777643
No 220
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=78.08 E-value=1.8 Score=38.99 Aligned_cols=33 Identities=15% Similarity=0.156 Sum_probs=28.7
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHh
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFPDKIK 498 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~ 498 (534)
-+||.+.++++.+|++|+++.++||++.++...
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~ 61 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAY 61 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHH
Confidence 589999999999999999999999996654433
No 221
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=77.89 E-value=4.1 Score=39.37 Aligned_cols=59 Identities=5% Similarity=0.067 Sum_probs=40.4
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH---Hhhc--CC-CceEEEEee----CCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLL--KP-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L--~~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
..+||.+.++++.++++|+++.++||+..... ++.+ .. .+.++.+=+ -|+++.|.++.+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~ 159 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAA 159 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHH
Confidence 56799999999999999999999999986432 3322 12 343443322 266677766654
No 222
>PRK09234 fbiC FO synthase; Reviewed
Probab=77.66 E-value=3.6 Score=48.93 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=28.1
Q ss_pred ecccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHH
Q 038595 352 ATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLH 395 (534)
Q Consensus 352 ~~p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~ 395 (534)
+..|+.|.++|.||--...+.... ... -+|++|++.+.+..
T Consensus 530 In~TN~C~~~C~FCafs~~~~~~~--~y~-Ls~eeI~~~a~ea~ 570 (843)
T PRK09234 530 INFTNICYTGCRFCAFAQRKTDAD--AYT-LSLDEVADRAWEAW 570 (843)
T ss_pred eecCCCCCCCCcccccccCCCCCC--ccc-CCHHHHHHHHHHHH
Confidence 445899999999997654331111 222 49999999987753
No 223
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=76.94 E-value=4.9 Score=38.11 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=40.8
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--CC-CceEEEEee----CCCHHHHHhhcC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--KP-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
..+.++|.+.++++.+++.|+++.++||+.... .++.+ .. .+.+.-+-| -|+++.|.++..
T Consensus 82 ~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~ 152 (213)
T TIGR01449 82 ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAE 152 (213)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHH
Confidence 346789999999999999999999999997532 23322 12 333333322 256667766543
No 224
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=76.87 E-value=4.3 Score=40.41 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=41.0
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhcC--C-CceEEEEee----CCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLLK--P-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L~--~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
..+||.+.++++.||++|+++.++||+.... .++.+- + .+.+..+=| -|+++.|.++.+
T Consensus 107 ~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~ 175 (248)
T PLN02770 107 LKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALE 175 (248)
T ss_pred CCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHH
Confidence 4579999999999999999999999998643 333321 2 344444443 367777766544
No 225
>PRK11587 putative phosphatase; Provisional
Probab=76.40 E-value=3.4 Score=40.03 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=29.4
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD 495 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe 495 (534)
....+||.+.++++.|+++|+++.++||++.+.
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~ 112 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVPV 112 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCchH
Confidence 455689999999999999999999999998753
No 226
>PRK09449 dUMP phosphatase; Provisional
Probab=75.78 E-value=6 Score=38.08 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=42.0
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH---Hhhc--CC-CceEEEEee----CCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLL--KP-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L--~~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
..++|...++++.|+ .|+++.++||+..... ++.+ .+ .+.++.|=| -|+++.|..+.+
T Consensus 94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~ 161 (224)
T PRK09449 94 CTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALE 161 (224)
T ss_pred CccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHH
Confidence 457999999999999 5899999999986432 3332 12 566777755 378888876544
No 227
>PRK01254 hypothetical protein; Provisional
Probab=74.84 E-value=12 Score=43.63 Aligned_cols=57 Identities=14% Similarity=0.130 Sum_probs=42.9
Q ss_pred ccHHHHHHHHHhc-CC-cEEEEcCC---C---CHHHHhhcCC---CceEEEEeeCCCHHHHHhhcCCC
Q 038595 469 PEINTLVDELHRR-RI-STFLVTNA---Q---FPDKIKLLKP---VTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 469 p~L~elI~~lk~~-gi-~~~LvTNG---t---lpe~l~~L~~---v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
..+.+|++.+++. |+ .+++.+.= . .++.+++|.. .-+|.|-+...+.+.++.++||-
T Consensus 468 ~~l~eLLrkLr~IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~ 535 (707)
T PRK01254 468 EPTINLYRRARDLKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPG 535 (707)
T ss_pred HHHHHHHHHHHhCCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCC
Confidence 5788889999885 77 46665541 1 1667777754 34888999999999999999983
No 228
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=74.35 E-value=3.9 Score=39.21 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=41.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--C--C-CceEEEEeeC----CCHHHHHhh
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--K--P-VTQLYVSVDA----ATKDSLKAI 521 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~--~-v~qlyvSlDA----~~~e~y~~I 521 (534)
.++.++|.+.++++.+|+.|+.+.++||+.... .++.+ . . .+.++.+=|. |+++.|.+.
T Consensus 84 ~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a 154 (220)
T TIGR03351 84 GPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRA 154 (220)
T ss_pred cCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHH
Confidence 357899999999999999999999999999642 23322 2 2 3455555442 567776654
No 229
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=73.50 E-value=17 Score=37.24 Aligned_cols=80 Identities=24% Similarity=0.211 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC--------c-C-CCCe-EEEEeccCCCCCCchHHHHHHHHHHhhcCccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED--------L-S-KEAL-VLIVASSWEDGKPPEAAKFFMNWIDESANDFR 149 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d--------L-~-~~~l-vIfv~STYg~G~pPdna~~Fle~L~e~~~DFR 149 (534)
...+|+.|.+.+.+.|+++..+|-.....+. + . ..++ +|. +|... ..+++....|=+.|.+...|
T Consensus 89 ~~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~-~s~~~-~~~~~~~~~lG~al~~~l~~-- 164 (271)
T cd07373 89 DTALAEACVTACPEHGVHARGVDYDGFPIDTGTITACTLMGIGTEALPLVV-ASNNL-YHSGEITEKLGAIAADAAKD-- 164 (271)
T ss_pred CHHHHHHHHHHHHHCCCcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEE-EEeCC-CCCHHHHHHHHHHHHHHHHH--
Confidence 6779999999999999999866664322222 1 1 2222 333 23222 23555566676777653211
Q ss_pred ccccCCCCCeEEEEEecCcch
Q 038595 150 VGSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 150 v~~~~Lkgl~yAVFGLGDs~Y 170 (534)
.+.+++|+|+||-+.
T Consensus 165 ------~~~rV~iIgSG~lSH 179 (271)
T cd07373 165 ------QNKRVAVVGVGGLSG 179 (271)
T ss_pred ------cCCeEEEEEeccccc
Confidence 358999999999865
No 230
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=73.30 E-value=3.3 Score=44.64 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=27.1
Q ss_pred CCceEEEeec--CCCCCCc--cHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 453 TPRHCALSLV--GEPIMYP--EINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 453 ~~~h~alSl~--GEPlLyp--~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
.++|+-+-=- ==|..-| -..+|++.+++.+.++.++|.--+|
T Consensus 186 ~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp 231 (369)
T COG1509 186 AIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHP 231 (369)
T ss_pred cCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCCh
Confidence 5666665433 4466666 3466777777767778888877764
No 231
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=71.44 E-value=13 Score=31.17 Aligned_cols=51 Identities=18% Similarity=0.144 Sum_probs=37.1
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEE--CCCCCCccCcCCCCeEEE
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLV--DPQTYEPEDLSKEALVLI 120 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~--dL~d~d~~dL~~~~lvIf 120 (534)
+++|+.++-.|++..++.+|.+.+.+.++.+.+. ++.+++. .+.+.++++.
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~-~~~~~Dliis 54 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPS-LLDDADLIVS 54 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhc-ccCCCcEEEE
Confidence 4899999999999999999999999888865553 5444433 2334554443
No 232
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=71.42 E-value=3.9 Score=37.48 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=24.8
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
+||.+.++++.||++|+.+.++||+.
T Consensus 28 ~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 28 LRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred EcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 69999999999999999999999986
No 233
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=71.36 E-value=8.8 Score=36.16 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=24.6
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
++|...++++.|++.|+.+.++||++
T Consensus 30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 30 PIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 58999999999999999999999986
No 234
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=70.75 E-value=4 Score=38.42 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=26.4
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
+.-+||.+.++++.||+.|+++.++||..
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 44578999999999999999999999987
No 235
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=70.41 E-value=7.2 Score=37.25 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=43.5
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCH---HHHhhc--CC-CceEEEEeeCC----CHHHHHhhcC
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFP---DKIKLL--KP-VTQLYVSVDAA----TKDSLKAIDR 523 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlp---e~l~~L--~~-v~qlyvSlDA~----~~e~y~~I~r 523 (534)
.--.||...+.++.++++ +++.++|||..+ ..++++ .+ .+.+.+|=+.. +++.|+.+.+
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~ 165 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALE 165 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHH
Confidence 445678888888888888 889999999764 344443 23 78888888876 7778777654
No 236
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=70.29 E-value=20 Score=34.94 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=44.8
Q ss_pred cEEEEEECccc----hHHHHHHHHHHHHh-hCCCceEEEC-CCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHH
Q 038595 69 KGKLFFISQTG----TSKTLAKRLHALLT-SNDLLFDLVD-PQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWID 142 (534)
Q Consensus 69 kVlI~YgSqTG----tTE~lAe~La~~L~-~~Gl~v~V~d-L~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~ 142 (534)
+|+|+++.-.| ......+.|.+.|. ..++.+++.+ .+.++.++|...+++||..-. +.--.++..+.|.++++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~-~~~l~~~~~~al~~~v~ 79 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTG-GDELTDEQRAALRDYVE 79 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SS-CCGS-HHHHHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCC-CCcCCHHHHHHHHHHHH
Confidence 48888888433 22366677777777 6788887665 456666678888888776555 21234445666767665
No 237
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=70.10 E-value=3.3 Score=36.89 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=43.9
Q ss_pred cCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhcC--C-CceEEEEeeC----CCHHHHHhhc
Q 038595 462 VGEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLLK--P-VTQLYVSVDA----ATKDSLKAID 522 (534)
Q Consensus 462 ~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L~--~-v~qlyvSlDA----~~~e~y~~I~ 522 (534)
...+.++|.+.++++.+++.|+++.++||+.... .++.+- . .+.+..|=|. |+++.|+.+.
T Consensus 73 ~~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~ 143 (176)
T PF13419_consen 73 ESKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRAL 143 (176)
T ss_dssp HGGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHH
T ss_pred hhccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccccccccccccchhhhhhhHHHHHHHHH
Confidence 3778889999999999999999999999998542 333332 1 5666666443 3466666654
No 238
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=69.56 E-value=12 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=27.1
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNA 491 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNG 491 (534)
+++-+||.+.++++.|++.|+++.++||+
T Consensus 85 ~~~~~~~g~~~~l~~l~~~g~~i~i~S~~ 113 (185)
T TIGR02009 85 TGAEVLPGIENFLKRLKKKGIAVGLGSSS 113 (185)
T ss_pred cCCCCCcCHHHHHHHHHHcCCeEEEEeCc
Confidence 55788999999999999999999999998
No 239
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=68.57 E-value=31 Score=36.07 Aligned_cols=101 Identities=9% Similarity=0.091 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHhhCCCceEEECCCCCCccC--------c-CCCCe-EEEEecc----C-CCCCCchHHHHHHHHHHhh
Q 038595 80 TSKTLAKRLHALLTSNDLLFDLVDPQTYEPED--------L-SKEAL-VLIVASS----W-EDGKPPEAAKFFMNWIDES 144 (534)
Q Consensus 80 tTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d--------L-~~~~l-vIfv~ST----Y-g~G~pPdna~~Fle~L~e~ 144 (534)
+...+|+.|++.+.+.|+++..++-.+...+. + +..++ +|-++.. + +...++.....|=+.|.+.
T Consensus 96 gd~eLA~~i~~~~~~~Gi~~~~~~~~~~~LDHGt~vPL~fl~p~~~~pvV~is~~~l~~~~~~~~~~~~~~~lG~ai~~a 175 (294)
T cd07372 96 VDVELAEACCEEGRKAGLVTKMMRNPRFRVDYGTITTLHMIRPQWDIPVVGISANNTPYYLNTKEGLGEMDVLGKATREA 175 (294)
T ss_pred CCHHHHHHHHHHHHHCCCCeeeccCCCCCCCchHHHHHHHhCCCCCCcEEEEecCcccccccccCCHHHHHHHHHHHHHH
Confidence 56789999999999999998765555444332 1 22233 3323211 1 2224455566677777764
Q ss_pred cCcccccccCCCCCeEEEEEecCcchH---------HHHHH------HHHHHHHHHHHc
Q 038595 145 ANDFRVGSLLLSNCKFAVFGVGSKSYE---------KTFNM------VAKDLSKKMREL 188 (534)
Q Consensus 145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~---------e~Fc~------aAK~LDk~L~kL 188 (534)
..+ .+++++|+|+||-+.. +.|.. .++.+|+.+-++
T Consensus 176 l~~--------~~~RV~vIaSG~LSH~l~~~~~~~p~~~~~~~~~~~~~~~fD~~vl~~ 226 (294)
T cd07372 176 IRK--------TGRRAVLLASNTLSHWHFHEEPAPPEDMSKEHPETYAGYQWDMRMIEL 226 (294)
T ss_pred HHh--------cCCeEEEEEeCcccccCccCCCCCccccccccccchhHHHHHHHHHHH
Confidence 321 3689999999987542 12333 567777776553
No 240
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=68.00 E-value=6.1 Score=35.62 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=40.6
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhh-cCC-CceEEEEee---CCCHHHHHhhcC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKL-LKP-VTQLYVSVD---AATKDSLKAIDR 523 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~-L~~-v~qlyvSlD---A~~~e~y~~I~r 523 (534)
.++..+|.+.++++.|++.|+++.++||+..+. .++. +.. .+.+..+=| -|+++.|.++.+
T Consensus 61 ~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~Kp~~~~~~~~~~ 129 (154)
T TIGR01549 61 AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKHLGDYFDLILGSDEFGAKPEPEIFLAALE 129 (154)
T ss_pred hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHHHHhcCcEEEecCCCCCCcCHHHHHHHHH
Confidence 355566999999999999999999999999643 2333 222 334443222 356677766654
No 241
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=67.13 E-value=6.7 Score=37.36 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=29.6
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDK 496 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~ 496 (534)
....+||...++++.|++.|+++.++||+..+..
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~ 105 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRA 105 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHH
Confidence 3467899999999999999999999999987543
No 242
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=67.01 E-value=7.3 Score=32.80 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=28.2
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
....++|.+.++++.+++.|+.++++||+..+
T Consensus 21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~ 52 (139)
T cd01427 21 EELELYPGVKEALKELKEKGIKLALATNKSRR 52 (139)
T ss_pred ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHH
Confidence 34578999999999999999999999999854
No 243
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=66.62 E-value=23 Score=35.87 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSL 153 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~ 153 (534)
...+|++|.+.|.+.|+++...+--.+|..- + ++.++=|+-+|.. ....|+....|=+.|.+.
T Consensus 79 ~~eLa~~i~~~l~~~gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~-~~~~~~~~~~lG~aL~~l--------- 148 (253)
T cd07363 79 SPELAERVAELLKAAGIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLP-ASLDPAEHYALGRALAPL--------- 148 (253)
T ss_pred CHHHHHHHHHHHHhcCCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEec-CCCCHHHHHHHHHHHHhh---------
Confidence 3459999999999999988765422222111 1 2334333333332 233566666666777543
Q ss_pred CCCCCeEEEEEecCcchH---H------HHHHHHHHHHHHHHH
Q 038595 154 LLSNCKFAVFGVGSKSYE---K------TFNMVAKDLSKKMRE 187 (534)
Q Consensus 154 ~Lkgl~yAVFGLGDs~Y~---e------~Fc~aAK~LDk~L~k 187 (534)
+..+++|+|+|+.... . .|...++.+|+++.+
T Consensus 149 --~~~~v~ii~SG~lsH~l~~~~~~~~~~~~~~~~~Fd~~i~~ 189 (253)
T cd07363 149 --RDEGVLIIGSGSSVHNLRALRWGGPAPPPPWALEFDDWLKD 189 (253)
T ss_pred --hhCCEEEEecCcceechhhhccccCCCCchHHHHHHHHHHH
Confidence 3458999999998642 0 223345566655544
No 244
>PLN02954 phosphoserine phosphatase
Probab=66.30 E-value=7.6 Score=37.35 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.2
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
+|-++|.+.++++.+|+.|+++.++||+...
T Consensus 82 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~ 112 (224)
T PLN02954 82 PPRLSPGIPELVKKLRARGTDVYLVSGGFRQ 112 (224)
T ss_pred cCCCCccHHHHHHHHHHCCCEEEEECCCcHH
Confidence 3568999999999999999999999999864
No 245
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=66.25 E-value=1.1e+02 Score=30.14 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=41.3
Q ss_pred ECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCC-CeEEEEeccCCCCC
Q 038595 75 ISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKE-ALVLIVASSWEDGK 129 (534)
Q Consensus 75 gSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~-~lvIfv~STYg~G~ 129 (534)
-+.+|--|.+|+.|...|.++|++++|....+........+ .+=++-+|+-..|.
T Consensus 13 Pa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~~~~~g~ 68 (185)
T PF09314_consen 13 PARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIPAPKNGS 68 (185)
T ss_pred CcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeCCCCCCc
Confidence 35689999999999999999999999998876654333333 34555567777774
No 246
>PLN02811 hydrolase
Probab=65.89 E-value=8.1 Score=37.50 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=27.9
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
++-+||.+.++|+.|++.|+++.++||+...
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~ 106 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKR 106 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchh
Confidence 4567899999999999999999999999864
No 247
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=65.37 E-value=6.3 Score=39.35 Aligned_cols=29 Identities=10% Similarity=0.352 Sum_probs=26.9
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
-+||...++++.+|+.|++++++|||+..
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~ 123 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVP 123 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 47999999999999999999999999864
No 248
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=65.11 E-value=9.5 Score=33.70 Aligned_cols=21 Identities=5% Similarity=0.053 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHHHHhcCC
Q 038595 206 LDVVFEDWSKRVVAILKSGGD 226 (534)
Q Consensus 206 ~e~~f~eW~~~L~~~L~~~~~ 226 (534)
.+...++|.+.|.++=....+
T Consensus 33 ~Eq~~q~Wl~sI~ekd~nlvP 53 (92)
T PF15243_consen 33 QEQQHQAWLQSIAEKDNNLVP 53 (92)
T ss_pred HHHHHHHHHHHHHHhccCcCc
Confidence 577888999999887665555
No 249
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=65.08 E-value=14 Score=35.82 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=27.6
Q ss_pred cCCCCCCccHHHHHHHHHhcCCcEEEEcCC
Q 038595 462 VGEPIMYPEINTLVDELHRRRISTFLVTNA 491 (534)
Q Consensus 462 ~GEPlLyp~L~elI~~lk~~gi~~~LvTNG 491 (534)
..+.-+||.+.++++.||+.|++++++||.
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~ 70 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWN 70 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCC
Confidence 356778999999999999999999999998
No 250
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=63.07 E-value=25 Score=34.39 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=59.5
Q ss_pred EEEEEECccchHHHHHHHHHHHHh------hCCCceEEECCCCCCcc--Cc-----------------------CCCCeE
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLT------SNDLLFDLVDPQTYEPE--DL-----------------------SKEALV 118 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~------~~Gl~v~V~dL~d~d~~--dL-----------------------~~~~lv 118 (534)
|.++-||. .+++++-.|+.... ..|++.+.+|+++.... |+ ...+.+
T Consensus 13 v~~imGSv--R~kr~cp~ia~~v~e~~ke~~~~l~ie~vDls~lPL~~~D~e~~pi~~vd~y~~~~t~aw~~ki~~aD~i 90 (199)
T KOG4530|consen 13 VAAIMGSV--RKKRFCPGIARAVIELTKESVPGLQIEYVDLSPLPLINTDLEVNPIKSVDEYYPPVTEAWRQKILEADSI 90 (199)
T ss_pred HHHHhhhh--hhcccCHHHHHHHHHhhhccCCCCceEEEeccCCccccCCcccCccccccccCcHHHHHHHHHHhhcceE
Confidence 55555555 34444444443332 35788889998865421 11 135789
Q ss_pred EEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHH
Q 038595 119 LIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRE 187 (534)
Q Consensus 119 Ifv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~k 187 (534)
||++|-|+.|-|.. .+.-++||-. ...|+..+|+..|--..+ ..+.+-+.+--.|+.
T Consensus 91 vFvtPqYN~gypA~-LKNAlD~lyh----------eW~gKPalivSyGGhGGg-~c~~qL~~v~~fLkm 147 (199)
T KOG4530|consen 91 VFVTPQYNFGYPAP-LKNALDWLYH----------EWAGKPALIVSYGGHGGG-RCQYQLRQVGVFLKM 147 (199)
T ss_pred EEecccccCCCchH-HHHHHHHhhh----------hhcCCceEEEEecCCCCc-hHHHHHHHHHhhhee
Confidence 99999999776543 4555566642 356766666655543222 344455666555544
No 251
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=62.59 E-value=7.8 Score=36.21 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=26.1
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
.+||...++++.+++.|+.+.++||+..
T Consensus 80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~ 107 (201)
T TIGR01491 80 SLRDYAEELVRWLKEKGLKTAIVSGGIM 107 (201)
T ss_pred CCCccHHHHHHHHHHCCCEEEEEeCCcH
Confidence 4799999999999999999999999975
No 252
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=61.59 E-value=7.3 Score=36.84 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=24.7
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
.+||.+.++++.|+++|++++++||..
T Consensus 29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~ 55 (161)
T TIGR01261 29 RFEKGVIPALLKLKKAGYKFVMVTNQD 55 (161)
T ss_pred eECCCHHHHHHHHHHCCCeEEEEeCCc
Confidence 458999999999999999999999963
No 253
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=61.25 E-value=9.5 Score=37.06 Aligned_cols=30 Identities=10% Similarity=0.119 Sum_probs=27.3
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
.-++|.+.++++.++++|+++.++|||...
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~ 102 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDF 102 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHH
Confidence 457999999999999999999999999863
No 254
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=61.03 E-value=16 Score=34.80 Aligned_cols=58 Identities=21% Similarity=0.352 Sum_probs=41.5
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH---Hhhc--CC-CceEEEEeeC----CCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLL--KP-VTQLYVSVDA----ATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L--~~-v~qlyvSlDA----~~~e~y~~I~r 523 (534)
+-++|...++++.+++. +++.++||+..... ++.+ .. .+.++.|=+. |+++.|..+.+
T Consensus 96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~ 163 (224)
T TIGR02254 96 HQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALE 163 (224)
T ss_pred CeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHH
Confidence 56789999999999999 99999999986432 3332 12 5666666442 77777776544
No 255
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=60.84 E-value=10 Score=36.39 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=27.0
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCHH
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFPD 495 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlpe 495 (534)
.+||.+.++++.|+++|+++.++||+....
T Consensus 82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~ 111 (214)
T PRK13288 82 TEYETVYETLKTLKKQGYKLGIVTTKMRDT 111 (214)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 478999999999999999999999998643
No 256
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=60.61 E-value=12 Score=32.74 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 468 YPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 468 yp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
+|.-.|+|+.|++.|+++.++||.+.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~ 41 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSS 41 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SS
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 78889999999999999999999985
No 257
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=60.36 E-value=9.3 Score=38.43 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=28.9
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
-|+|-|.++||++.||++|..++|++-|..+
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~ 116 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQ 116 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHH
Confidence 6899999999999999999999999999753
No 258
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=60.32 E-value=33 Score=36.26 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=49.0
Q ss_pred ccHHHhhhcc-CCceEEEeecCCCCCCc-cHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCCHHHHHh
Q 038595 443 VTLERLNEGL-TPRHCALSLVGEPIMYP-EINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDSLKA 520 (534)
Q Consensus 443 ~~~~~~~ea~-~~~h~alSl~GEPlLyp-~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~~e~y~~ 520 (534)
|-.|++++|+ .++.+-||..--|=.-| +.-+++.++.++ +. -+|-+-|+..+.++.++
T Consensus 101 vLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r-~~-------------------vWvELGLQT~h~~Tlk~ 160 (312)
T COG1242 101 VLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKR-YE-------------------VWVELGLQTAHDKTLKR 160 (312)
T ss_pred HHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhh-eE-------------------EEEEeccchhhHHHHHH
Confidence 6688999998 58899999999999988 566666666654 32 24666778888889999
Q ss_pred hcCCC
Q 038595 521 IDRPL 525 (534)
Q Consensus 521 I~rP~ 525 (534)
|+|.+
T Consensus 161 iNRgH 165 (312)
T COG1242 161 INRGH 165 (312)
T ss_pred Hhccc
Confidence 99875
No 259
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=60.32 E-value=12 Score=37.50 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=42.4
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCCCHHH---HhhcCCCceEEEEeeCCCHHHHHhhcCCC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQFPDK---IKLLKPVTQLYVSVDAATKDSLKAIDRPL 525 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGtlpe~---l~~L~~v~qlyvSlDA~~~e~y~~I~rP~ 525 (534)
+.|.+.++++++++.++++.+++.|+-|=+ ++.+..-+. .=++|+..-+.|-.++.|+
T Consensus 74 Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~-i~~idi~sn~~~ih~dg~h 134 (220)
T COG4359 74 IDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKER-IYCIDIVSNNDYIHIDGQH 134 (220)
T ss_pred cCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccc-eeeeEEeecCceEcCCCce
Confidence 579999999999999999999999998743 444443122 2256776667666666654
No 260
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=60.02 E-value=9 Score=39.34 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=27.4
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
.-++|.+.++++.+|+.|+++.|+||+...
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~ 172 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEK 172 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 457999999999999999999999999864
No 261
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=60.02 E-value=9.8 Score=38.66 Aligned_cols=58 Identities=10% Similarity=0.127 Sum_probs=38.7
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--CC-CceEEEEee----CCCHHHHHhhc
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--KP-VTQLYVSVD----AATKDSLKAID 522 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~~-v~qlyvSlD----A~~~e~y~~I~ 522 (534)
..+||.+.++++.|+++|+++.|+||++... .++.+ .. .+.+..+=| -|+++.|....
T Consensus 108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~ 175 (260)
T PLN03243 108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAA 175 (260)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHH
Confidence 3469999999999999999999999998642 33322 12 344443322 34566665543
No 262
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=59.89 E-value=23 Score=35.85 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=29.7
Q ss_pred cCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 462 VGEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 462 ~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
..++.++|.+.++++.+++.|+.+.++||....
T Consensus 183 ~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~ 215 (300)
T PHA02530 183 VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGV 215 (300)
T ss_pred cccCCCChhHHHHHHHHHhCCCEEEEEeCCChh
Confidence 467788999999999999999999999999863
No 263
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=59.69 E-value=10 Score=36.29 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=26.1
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
.++|...++++.+++.|+.+.++|||..
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~ 112 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFD 112 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcH
Confidence 4799999999999999999999999974
No 264
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=59.61 E-value=46 Score=34.53 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC--------c-CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED--------L-SKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG 151 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d--------L-~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~ 151 (534)
...+|++|++.+.+.|+++..++..+...+. + ++.++=|+-++.-.....++....|=+.|.+...
T Consensus 95 d~eLA~~i~~~~~~~gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~~~~~~~~~~~lG~al~~~i~----- 169 (282)
T TIGR02298 95 NPALGQLIADEAQEHGVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWCTVHDIEESRALGEAIRKAIE----- 169 (282)
T ss_pred CHHHHHHHHHHHHHCCCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecCCCCCHHHHHHHHHHHHHHHH-----
Confidence 4679999999999999987654444443332 1 2333322222221113345556677777776531
Q ss_pred ccCCCCCeEEEEEecCcch
Q 038595 152 SLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 152 ~~~Lkgl~yAVFGLGDs~Y 170 (534)
-++.+++|+|+||-+.
T Consensus 170 ---~~~~rV~iIaSG~lSH 185 (282)
T TIGR02298 170 ---QSDGRVAVLASGSLSH 185 (282)
T ss_pred ---hcCCCEEEEEecccce
Confidence 1468999999999876
No 265
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=58.37 E-value=12 Score=40.90 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=29.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHH
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDK 496 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~ 496 (534)
+...+||.+.++++.||++|+++.|+||++....
T Consensus 327 ~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~ 360 (459)
T PRK06698 327 GKGALYPNVKEIFTYIKENNCSIYIASNGLTEYL 360 (459)
T ss_pred cCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHH
Confidence 4557899999999999999999999999997543
No 266
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=57.54 E-value=11 Score=37.68 Aligned_cols=60 Identities=12% Similarity=-0.027 Sum_probs=40.5
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhh--cCCC--ceEEEEee----CCCHHHHHhhc
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKL--LKPV--TQLYVSVD----AATKDSLKAID 522 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~--L~~v--~qlyvSlD----A~~~e~y~~I~ 522 (534)
..+.+||.+.++++.||++|+++.|+||+.... .++. +... +.+..+=| =|+++.|..+.
T Consensus 98 ~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~ 168 (267)
T PRK13478 98 DYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNA 168 (267)
T ss_pred hcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHH
Confidence 446789999999999999999999999998642 2332 2232 33333322 25777766653
No 267
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=57.53 E-value=16 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=32.0
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDP 104 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL 104 (534)
+++++.||-.||+..+|..+.+.|.++|+++++...
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~ 39 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQC 39 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 489999999999999999999999999998766653
No 268
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=57.40 E-value=12 Score=36.64 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=28.1
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
+..+||...++++.|++.|+++.++||+...
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~ 123 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEY 123 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHH
Confidence 5668999999999999999999999999863
No 269
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=57.19 E-value=20 Score=35.46 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=39.2
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC-CceEEEEeeC----CCHHHHHhhc
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP-VTQLYVSVDA----ATKDSLKAID 522 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~-v~qlyvSlDA----~~~e~y~~I~ 522 (534)
..++|...++++.|++. +++.++|||...-....|.. .+.++.|=+. |+++.|.++.
T Consensus 112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~ 173 (238)
T PRK10748 112 IDVPQATHDTLKQLAKK-WPLVAITNGNAQPELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAA 173 (238)
T ss_pred CCCCccHHHHHHHHHcC-CCEEEEECCCchHHHCCcHHhhceeEecccCCcCCCcHHHHHHHH
Confidence 46789999999999975 89999999986422222222 3455555443 7888887654
No 270
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=56.47 E-value=12 Score=36.98 Aligned_cols=60 Identities=12% Similarity=-0.120 Sum_probs=40.6
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhh--cCCC--ceEEEEee----CCCHHHHHhhcC
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKL--LKPV--TQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~--L~~v--~qlyvSlD----A~~~e~y~~I~r 523 (534)
...++|.+.++++.||++|+++.|+||+.... .++. |... +.+..|=+ -|+++.|.++.+
T Consensus 97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~ 167 (253)
T TIGR01422 97 YSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAI 167 (253)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHH
Confidence 45679999999999999999999999998632 2332 2231 33333322 267777766543
No 271
>cd07362 HPCD_like Class III extradiol dioxygenases with similarity to homoprotocatechuate 2,3-dioxygenase, which catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. This subfamily of class III extradiol dioxygenases consists of two types of proteins with known enzymatic activities; 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol 1,6-dioxygenase. HPCD catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield the product alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. The enzyme is probably a heterotetrame
Probab=55.86 E-value=75 Score=32.71 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC--------c-CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED--------L-SKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG 151 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d--------L-~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~ 151 (534)
...+|++|.+.+.+.|+++....-.+...+. + ++.++-|+-+|--.....+.....|=+.|.+..
T Consensus 91 ~~~LA~~i~~~l~~~Gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~iPVV~vs~~~~~~~~~~~~~lG~ai~~al------ 164 (272)
T cd07362 91 DPELGRLLVEEGQEAGLRVKAVNDPTYIWDYGTVVPLRYLNPNKDIPVVSISACWTAASLEESYTWGEVIGKAL------ 164 (272)
T ss_pred CHHHHHHHHHHHHHcCCceeeccCCCCCCCcchHHHHHHhCCCCCCcEEEEeccCCCCCHHHHHHHHHHHHHHH------
Confidence 4569999999999999988754322222221 1 223332222221111223444444444444432
Q ss_pred ccCCCCCeEEEEEecCcch
Q 038595 152 SLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 152 ~~~Lkgl~yAVFGLGDs~Y 170 (534)
..+ +.+++|+|+|+.+.
T Consensus 165 -~~~-~~rv~ii~SG~lsH 181 (272)
T cd07362 165 -LES-DKRVVFLASGSLSH 181 (272)
T ss_pred -Hhh-CCCEEEEEeCcccc
Confidence 123 67899999998865
No 272
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.47 E-value=98 Score=28.97 Aligned_cols=122 Identities=15% Similarity=0.092 Sum_probs=72.5
Q ss_pred EEEEECccchHHHHHHHHH-HHHhhCCCceEEECCC-CCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHHhh
Q 038595 71 KLFFISQTGTSKTLAKRLH-ALLTSNDLLFDLVDPQ-TYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWIDES 144 (534)
Q Consensus 71 lI~YgSqTGtTE~lAe~La-~~L~~~Gl~v~V~dL~-d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~ 144 (534)
+|+-++..|........+. ..|++.|++ |+|+- +..++++ .+++.-++++|+... ..-..+..+.+.|++.
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~Gfe--Vi~LG~~v~~e~~v~aa~~~~adiVglS~l~~-~~~~~~~~~~~~l~~~ 79 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNAGFN--VVNLGVLSPQEEFIKAAIETKADAILVSSLYG-HGEIDCKGLRQKCDEA 79 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEecccc-cCHHHHHHHHHHHHHC
Confidence 6777888898888876654 455778876 55664 3444544 235666667777773 3334577787777763
Q ss_pred cCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHH
Q 038595 145 ANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKR 216 (534)
Q Consensus 145 ~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~ 216 (534)
.+++.. |+.=|.-..+ ..-...+.+.|+++|..++|+.+. .+ +++..|..+
T Consensus 80 ---------gl~~~~--vivGG~~vi~---~~d~~~~~~~l~~~Gv~~vF~pgt------~~-~~iv~~l~~ 130 (134)
T TIGR01501 80 ---------GLEGIL--LYVGGNLVVG---KQDFPDVEKRFKEMGFDRVFAPGT------PP-EVVIADLKK 130 (134)
T ss_pred ---------CCCCCE--EEecCCcCcC---hhhhHHHHHHHHHcCCCEEECcCC------CH-HHHHHHHHH
Confidence 345543 4333432222 001123456788999999987643 12 355566544
No 273
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=55.42 E-value=62 Score=33.24 Aligned_cols=85 Identities=11% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CCC--CeEEEEeccCCCCC-CchHHHHHHHHHHhhcCcccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SKE--ALVLIVASSWEDGK-PPEAAKFFMNWIDESANDFRV 150 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~~--~lvIfv~STYg~G~-pPdna~~Fle~L~e~~~DFRv 150 (534)
...+|+.|.+.+.+.|+++...+--.+|..- + +.. .++-+.+.++.... ++.....|=+.|.+...+.
T Consensus 89 d~~LA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p~~~~~~~~~lG~al~~~i~~~-- 166 (268)
T cd07367 89 HREFARAFVRQAAEDGFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDPAPSPRRCWALGKVLAQYVEKR-- 166 (268)
T ss_pred CHHHHHHHHHHHHHcCCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHhc--
Confidence 4569999999999999987654422232111 1 122 34444444443222 3444555666676653110
Q ss_pred cccCCCCCeEEEEEecCcch
Q 038595 151 GSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 151 ~~~~Lkgl~yAVFGLGDs~Y 170 (534)
.-++.+++|+|+|+-+.
T Consensus 167 ---~~~d~rV~iiaSGgLSH 183 (268)
T cd07367 167 ---RPAGERVAVIAAGGLSH 183 (268)
T ss_pred ---CCCCCcEEEEEcccccC
Confidence 11568999999999875
No 274
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=55.42 E-value=21 Score=38.78 Aligned_cols=61 Identities=13% Similarity=0.123 Sum_probs=42.2
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--CC-CceEEEEee----CCCHHHHHhhcC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--KP-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
+...+||.+.++++.|++.|++++|+||+.... .++.+ .+ .+.++.+=| -|+++.|....+
T Consensus 213 ~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~ 283 (381)
T PLN02575 213 GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQ 283 (381)
T ss_pred cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHH
Confidence 445689999999999999999999999998632 23322 22 344444433 357777776554
No 275
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=55.22 E-value=7.1 Score=43.13 Aligned_cols=17 Identities=35% Similarity=1.136 Sum_probs=13.5
Q ss_pred ccccccccccccCCCCC
Q 038595 356 LACANKCVFCWRHHTNP 372 (534)
Q Consensus 356 ~~C~~~C~~C~r~~~~~ 372 (534)
..|+|+|+||.-+.-.|
T Consensus 82 ~~C~N~C~FCFidQlP~ 98 (433)
T TIGR03279 82 IQCNNRCPFCFIDQQPP 98 (433)
T ss_pred cccCCcCceEeccCCCC
Confidence 35999999999976444
No 276
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=54.70 E-value=46 Score=33.45 Aligned_cols=70 Identities=10% Similarity=0.082 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCceEEECCCC----CCccCcCCCCeEEEEeccCCCCCCch-HHHHHHHHHHhhcCcccccccCCCCC
Q 038595 84 LAKRLHALLTSNDLLFDLVDPQT----YEPEDLSKEALVLIVASSWEDGKPPE-AAKFFMNWIDESANDFRVGSLLLSNC 158 (534)
Q Consensus 84 lAe~La~~L~~~Gl~v~V~dL~d----~d~~dL~~~~lvIfv~STYg~G~pPd-na~~Fle~L~e~~~DFRv~~~~Lkgl 158 (534)
+-..|+..|++.|++|++..+++ ++++.|.+++++|+..-+ +.+..++ -.+.|.++.+ +|.
T Consensus 24 ~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~-~~~~l~~eq~~~l~~~V~-------------~Gg 89 (215)
T cd03142 24 MHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHI-AHDEVKDEIVERVHRRVL-------------DGM 89 (215)
T ss_pred HHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCC-CcCcCCHHHHHHHHHHHH-------------cCC
Confidence 44556666777899998777766 344557788887765433 4455555 4556666554 577
Q ss_pred eEEEEEecC
Q 038595 159 KFAVFGVGS 167 (534)
Q Consensus 159 ~yAVFGLGD 167 (534)
.++++=.|.
T Consensus 90 Glv~lHsg~ 98 (215)
T cd03142 90 GLIVLHSGH 98 (215)
T ss_pred CEEEECCCc
Confidence 777664443
No 277
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=54.55 E-value=14 Score=30.64 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=40.4
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCC-CCeEEEEeccCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSK-EALVLIVASSWE 126 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~-~~lvIfv~STYg 126 (534)
+++++-++--||+-.+|++|.+.+.++|+++.+............. .+ +|+.+|...
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D-~il~~~~i~ 58 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDAD-LILLTPQIA 58 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-S-EEEEEESSG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCc-EEEEcCccc
Confidence 4889999999999999999999999999887766655222222333 45 445555554
No 278
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=54.42 E-value=17 Score=34.69 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=28.6
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
..+.++|.+.++++.+++.|+.+.++||+.-.
T Consensus 90 ~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~ 121 (226)
T PRK13222 90 GGSRLYPGVKETLAALKAAGYPLAVVTNKPTP 121 (226)
T ss_pred ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 45678999999999999999999999999853
No 279
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=54.04 E-value=15 Score=36.32 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=26.6
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
..+||...++++.|++.|+++.++||.+.+
T Consensus 23 ~~~~pga~e~L~~L~~~G~~~~ivTN~~~~ 52 (242)
T TIGR01459 23 NHTYPGAVQNLNKIIAQGKPVYFVSNSPRN 52 (242)
T ss_pred CccCccHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 345999999999999999999999998763
No 280
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=52.90 E-value=92 Score=28.32 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=28.2
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhC-CCceE
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSN-DLLFD 100 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~-Gl~v~ 100 (534)
+|+|.|+..+-.=......|++.|++. |++|.
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~ 34 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVI 34 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCcee
Confidence 599999998777779999999999988 99875
No 281
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=52.35 E-value=18 Score=36.82 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=28.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
.+..++|.+.++++.+++.|+++.++||+..+
T Consensus 98 ~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~ 129 (272)
T PRK13223 98 ELTVVYPGVRDTLKWLKKQGVEMALITNKPER 129 (272)
T ss_pred cCCccCCCHHHHHHHHHHCCCeEEEEECCcHH
Confidence 46778999999999999999999999999764
No 282
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=51.75 E-value=18 Score=37.02 Aligned_cols=32 Identities=13% Similarity=0.329 Sum_probs=28.3
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCHH
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFPD 495 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe 495 (534)
...+||.+.++++.|++.|+.+.++||+..+.
T Consensus 140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~ 171 (273)
T PRK13225 140 ALQLFPGVADLLAQLRSRSLCLGILSSNSRQN 171 (273)
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHH
Confidence 34579999999999999999999999998743
No 283
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=51.30 E-value=1.4e+02 Score=32.32 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=66.7
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
.++++||=..|.-+-+|+.|.+.+.++|..+.|++..-..-+- +..-.+ |..|.- .++.+|++||+..
T Consensus 77 ~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~--n~~p~~-----yh~G~t-~D~~~~l~~l~~~---- 144 (345)
T COG0429 77 LVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEA--NTSPRL-----YHSGET-EDIRFFLDWLKAR---- 144 (345)
T ss_pred eEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCc--ccCcce-----ecccch-hHHHHHHHHHHHh----
Confidence 5888888888878889999999999999999999877653211 111111 233433 6789999999864
Q ss_pred cccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCce
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGE 192 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~r 192 (534)
.-..++..+|+ +-+ |-.+..+|.+-|...
T Consensus 145 ------~~~r~~~avG~---SLG------gnmLa~ylgeeg~d~ 173 (345)
T COG0429 145 ------FPPRPLYAVGF---SLG------GNMLANYLGEEGDDL 173 (345)
T ss_pred ------CCCCceEEEEe---ccc------HHHHHHHHHhhccCc
Confidence 23456666676 333 567777877777643
No 284
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=51.30 E-value=18 Score=33.18 Aligned_cols=30 Identities=23% Similarity=0.240 Sum_probs=26.9
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
..++|.+.++++.+++.|+++.++|++...
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~ 101 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDF 101 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHH
Confidence 446899999999999999999999999763
No 285
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=51.01 E-value=19 Score=33.43 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=30.4
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCC
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQT 106 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d 106 (534)
-+++|.|.|...+..|+.|.+.|.+.|..+.+..+.+
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~g~~v~~~~i~~ 60 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEKGINVEVVEIEG 60 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEE---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeee
Confidence 5899999999999999999999999998887766544
No 286
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=50.99 E-value=2.2e+02 Score=31.18 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=73.1
Q ss_pred EEEEEECcc-------chHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-------C--CCCeEEEEeccCCCCCCchH
Q 038595 70 GKLFFISQT-------GTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-------S--KEALVLIVASSWEDGKPPEA 133 (534)
Q Consensus 70 VlI~YgSqT-------GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-------~--~~~lvIfv~STYg~G~pPdn 133 (534)
+.++-+|+. ...+..++++.+.|.+.++++...+.-..+.++. . +-+.+|+..+||+.+.
T Consensus 3 ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~---- 78 (452)
T cd00578 3 IGFVTGSQHLYGEELLEQVEEYAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAK---- 78 (452)
T ss_pred EEEEEecccccChhHHHHHHHHHHHHHHHHhcCCceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHH----
Confidence 455555554 3577788888888877665444333222222221 1 2357888889998331
Q ss_pred HHHHHHHHHhhcCcccccccCCCCCeEEEEEecCc--------chHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCC
Q 038595 134 AKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSK--------SYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGE 205 (534)
Q Consensus 134 a~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs--------~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~ 205 (534)
..+..++. -++.+.+++..+. .+ ..+|. ...+-..|.++|.+.. ...++..++.
T Consensus 79 --~~~~~~~~------------~~~Pvll~a~~~~~~~~~~~~~~-~s~~g-~~~~~~~l~r~gi~~~--~v~g~~~d~~ 140 (452)
T cd00578 79 --MWIAGLSE------------LRKPVLLLATQFNREIPDFMNLN-QSACG-LREFGNILARLGIPFK--VVYGHWKDED 140 (452)
T ss_pred --HHHHHHHh------------cCCCEEEEeCCCCCCCCchhhhh-cchhh-hHHHHHHHHHcCCcee--EEECCCCCHH
Confidence 22333332 1457778887653 12 24453 4677888999997654 3345544334
Q ss_pred cHHHHHHHHHHH
Q 038595 206 LDVVFEDWSKRV 217 (534)
Q Consensus 206 ~e~~f~eW~~~L 217 (534)
..+.+..|....
T Consensus 141 ~~~~i~~~~raa 152 (452)
T cd00578 141 VLRKIESWARAA 152 (452)
T ss_pred HHHHHHHHHHHH
Confidence 567788887743
No 287
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=50.94 E-value=18 Score=34.31 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=25.1
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
.+|.+++ .++++.||+.|+++.|+||+...
T Consensus 105 ~~~~~~~--~~~L~~l~~~g~~~~i~T~~~~~ 134 (197)
T TIGR01548 105 DETLLTP--KGLLRELHRAPKGMAVVTGRPRK 134 (197)
T ss_pred cccccCH--HHHHHHHHHcCCcEEEECCCCHH
Confidence 4555555 89999999999999999999864
No 288
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=50.90 E-value=60 Score=34.34 Aligned_cols=71 Identities=21% Similarity=0.463 Sum_probs=40.8
Q ss_pred HHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeecccccccccccccccCCCCCCCCccccc
Q 038595 301 VIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWK 380 (534)
Q Consensus 301 ~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p~~~C~~~C~~C~r~~~~~~~~~~~~~ 380 (534)
.+++.|++.|-+-|-.-.+ | -..|-|+-+. .---|-| --.|.-+|-||...++.|..--
T Consensus 40 ~~k~~~r~~~L~TVCEEA~---C-------PNi~ECw~~~-----tATFmIm--G~~CTR~C~FC~V~~g~P~~lD---- 98 (306)
T COG0320 40 EIKEILRKNGLHTVCEEAS---C-------PNIGECWSRG-----TATFMIL--GDICTRRCRFCDVKTGRPNPLD---- 98 (306)
T ss_pred HHHHHHHhcCCceecccCC---C-------CChHHHhcCC-----ceEEeec--cchhccCCCccccCCCCCCCCC----
Confidence 4577788887776653221 1 2344554321 1111222 2359999999999988776433
Q ss_pred CCChHHHHHHHH
Q 038595 381 MDDPIEIVNTAI 392 (534)
Q Consensus 381 ~~~p~~i~~~~~ 392 (534)
.++|+-+.+.+.
T Consensus 99 ~~EP~rvAeaV~ 110 (306)
T COG0320 99 PDEPERVAEAVK 110 (306)
T ss_pred CchHHHHHHHHH
Confidence 267766666553
No 289
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=50.85 E-value=35 Score=29.75 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=30.9
Q ss_pred EEEEEECccchHHHH--HHHHHHHHhhCCCceEEECCCC
Q 038595 70 GKLFFISQTGTSKTL--AKRLHALLTSNDLLFDLVDPQT 106 (534)
Q Consensus 70 VlI~YgSqTGtTE~l--Ae~La~~L~~~Gl~v~V~dL~d 106 (534)
|.|+|+|++|+.+-. .+++...|...+++.+.+|++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCC
Confidence 789999999988754 5778888889999988888863
No 290
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=50.43 E-value=22 Score=30.80 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=27.7
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
+.||..|++ +.+.++++.++++|+++.++|+-.-
T Consensus 65 i~iS~~g~~---~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 65 IAISFSGET---KETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred EEEeCCCCC---HHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 455556997 7889999999999999999888543
No 291
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=49.91 E-value=1.2e+02 Score=28.18 Aligned_cols=110 Identities=15% Similarity=0.134 Sum_probs=65.6
Q ss_pred EEEECccchHHHHHHHHHH-HHhhCCCceEEECCC-CCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhc
Q 038595 72 LFFISQTGTSKTLAKRLHA-LLTSNDLLFDLVDPQ-TYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWIDESA 145 (534)
Q Consensus 72 I~YgSqTGtTE~lAe~La~-~L~~~Gl~v~V~dL~-d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~ 145 (534)
|+-++..|..-.+.+.|.. .|+..|++ |+|+- +..++.+ .+++.-++++|+......+ .+..+.+.|++.
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~Gfe--VidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~-~~~~~~~~l~~~- 77 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAGFN--VVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEI-DCKGLREKCDEA- 77 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHH-HHHHHHHHHHHC-
Confidence 5677888888877766654 45678876 56665 3344443 2345666677777745444 577888888763
Q ss_pred CcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEE
Q 038595 146 NDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVE 198 (534)
Q Consensus 146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~ 198 (534)
.++. +-|+.=|.-.-+ ..-.....+.|.++|..++|+++.
T Consensus 78 --------gl~~--v~vivGG~~~i~---~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 78 --------GLKD--ILLYVGGNLVVG---KQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred --------CCCC--CeEEEECCCCCC---hhhhHHHHHHHHHcCCCEEECcCC
Confidence 3333 445544432111 001123446788899999998753
No 292
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=49.88 E-value=20 Score=32.97 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=26.2
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
-++|.+.++++.+++.|+++.++||+...
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~ 100 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDF 100 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHH
Confidence 46889999999999999999999999864
No 293
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=49.70 E-value=35 Score=26.90 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=25.7
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCc
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLL 98 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~ 98 (534)
++++.++-.|++..++.+|.+.+.+.++.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~ 30 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIE 30 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCe
Confidence 67888888899999999999999988875
No 294
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=49.70 E-value=39 Score=28.01 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=31.1
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCc--eEEECCCCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLL--FDLVDPQTY 107 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~--v~V~dL~d~ 107 (534)
+++|+.++-.|++..++.+|.+.+.+.++. +...++++.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~~ 41 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGSA 41 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccccc
Confidence 378999999999999999999999888875 334444443
No 295
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=48.74 E-value=39 Score=36.85 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=26.6
Q ss_pred CCCCCCccHHHHHHHHHhcCCc--------EEEEcCCCCHHHHhhc
Q 038595 463 GEPIMYPEINTLVDELHRRRIS--------TFLVTNAQFPDKIKLL 500 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~--------~~LvTNGtlpe~l~~L 500 (534)
|.++ |.+.++|+.|++.|+. +.+=||+..-++.+-|
T Consensus 330 ~~s~--p~~~~vv~~L~~~G~~asrTHf~p~giKTda~~~ev~~vl 373 (380)
T COG1867 330 GLSA--PPLEEVVEALRSAGYEASRTHFSPTGIKTDAPYEEVEKVL 373 (380)
T ss_pred CCCC--CCHHHHHHHHHhcCceeeeeccCCcccccCCCHHHHHHHH
Confidence 7777 9999999999999875 3356777765554433
No 296
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=48.48 E-value=23 Score=30.74 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=28.7
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQ 105 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~ 105 (534)
+|+++.|+--+|+ .+|+.+.+.+.++|+++++...+
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~~~~~~v~~~~ 36 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKRGIDAEIEAVP 36 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHCCCceEEEEec
Confidence 3788888888877 68999999999999976555443
No 297
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=47.29 E-value=18 Score=33.88 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=40.9
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH--HHHhhcCCC-ceEEEEee--CCCHHHHHhhc
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFP--DKIKLLKPV-TQLYVSVD--AATKDSLKAID 522 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp--e~l~~L~~v-~qlyvSlD--A~~~e~y~~I~ 522 (534)
-.-.++|...++|+.|++.|+++.|+|+.... ..+.+.+.+ +....+-. -|+++.|.++.
T Consensus 124 ~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i 188 (215)
T PF00702_consen 124 LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRII 188 (215)
T ss_dssp EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHH
T ss_pred ecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccccccccccccccchhHHHHH
Confidence 34456899999999999999999999976643 334344454 44455555 56666555544
No 298
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=47.28 E-value=37 Score=30.25 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.4
Q ss_pred EEEEEECccchHHH--HHHHHHHHHhhCCCceEEECCCC
Q 038595 70 GKLFFISQTGTSKT--LAKRLHALLTSNDLLFDLVDPQT 106 (534)
Q Consensus 70 VlI~YgSqTGtTE~--lAe~La~~L~~~Gl~v~V~dL~d 106 (534)
|.|+++|.||+.+- =-+++...|.+.+++.+.+|++.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~ 41 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM 41 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC
Confidence 78999999999764 45677888889999999999876
No 299
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=47.20 E-value=20 Score=34.73 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=27.6
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
+..++|.+.++++.++++|+++.++|||..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~ 97 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMD 97 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcH
Confidence 457899999999999999999999999975
No 300
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=46.91 E-value=94 Score=32.12 Aligned_cols=84 Identities=11% Similarity=0.067 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------cCC------CC--eEEEEe-ccCCCCCCchHHHHHHHHHHhhc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------LSK------EA--LVLIVA-SSWEDGKPPEAAKFFMNWIDESA 145 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L~~------~~--lvIfv~-STYg~G~pPdna~~Fle~L~e~~ 145 (534)
...+|+.|++.+.+.|+++...+=-.+|-.- +.. .+ .+=+++ .+..-..++.....|=+.|.+..
T Consensus 94 ~~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~~~~~~~~~~~p~VPV~~n~~~~p~~~~~~~~~lG~al~~ai 173 (277)
T cd07368 94 NEPLAHHIMQHGLEYGIDWAVARSFTVDHAATIPIHLAVRPVRAKGKGMRAIPVYLATGVDPFITSWRAHELGRVIGAAV 173 (277)
T ss_pred CHHHHHHHHHHHHHcCCCEeeecCcCCCcchhccHHHHhCcccccCCCCCeEEEEEecccCCCCCHHHHHHHHHHHHHHH
Confidence 5679999999999999977544211122110 111 11 222222 22222344555666667776643
Q ss_pred CcccccccCCCCCeEEEEEecCcch
Q 038595 146 NDFRVGSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y 170 (534)
. ..+++.+++|+|+|+-+.
T Consensus 174 ~------~~~~d~rVliIaSG~LSH 192 (277)
T cd07368 174 E------AWQGDERVAIIGSGGISH 192 (277)
T ss_pred H------hcCCCCCEEEEEcCcccC
Confidence 1 235788999999999876
No 301
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=46.77 E-value=1e+02 Score=31.15 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CC--CCeEEEEeccCCC-CCCchHHHHHHHHHHhhcCccc
Q 038595 80 TSKTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SK--EALVLIVASSWED-GKPPEAAKFFMNWIDESANDFR 149 (534)
Q Consensus 80 tTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~--~~lvIfv~STYg~-G~pPdna~~Fle~L~e~~~DFR 149 (534)
....+|++|.+.|.+.|+.+....--.+|..- + ++ ..++-+.+.+... ...|.....|=+.|.+...
T Consensus 94 g~~~la~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p~~~~~~~~~lG~aL~~~~~--- 170 (272)
T PF02900_consen 94 GDPELAERIAEHLRKAGFDVAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPPSPSPERHYRLGRALRKARE--- 170 (272)
T ss_dssp B-HHHHHHHHHHHHHTTS-EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS-TS-HHHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHhcCCCEEeccCcCCccccceeeeecccccCcceeeeEeecccccCCCHHHHHHHHHHHHHHHH---
Confidence 45689999999999999987662221222110 1 22 2344444444222 3334455566666765521
Q ss_pred ccccCCCCCeEEEEEecCcchH------HHHHH-HHHHHHHHHHHc
Q 038595 150 VGSLLLSNCKFAVFGVGSKSYE------KTFNM-VAKDLSKKMREL 188 (534)
Q Consensus 150 v~~~~Lkgl~yAVFGLGDs~Y~------e~Fc~-aAK~LDk~L~kL 188 (534)
.+ +.+++|+|+|+.+.. ..+.. .+..+|+++.++
T Consensus 171 ----~~-~~rv~vi~SG~lsH~l~~~~~~~~~~~~~~~fD~~i~~~ 211 (272)
T PF02900_consen 171 ----SS-DERVAVIASGGLSHNLRDPRPGGYDPPWAEEFDEWILDA 211 (272)
T ss_dssp ----TS-GGCEEEEEEE-SS--TTSTTTTS---CHHHHHHHHHHCC
T ss_pred ----hc-CCCEEEEEeCCcccCCCcccccchhhHhHHHHHHHHHHH
Confidence 11 789999999998641 12232 566777776653
No 302
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=46.72 E-value=20 Score=38.51 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=28.1
Q ss_pred CccHHHHHHHHHhcCCcEEEEcCCCCH---HHHhhc
Q 038595 468 YPEINTLVDELHRRRISTFLVTNAQFP---DKIKLL 500 (534)
Q Consensus 468 yp~L~elI~~lk~~gi~~~LvTNGtlp---e~l~~L 500 (534)
+|.+.++++.+++.|++++|+||.... ..++.+
T Consensus 186 ~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l 221 (343)
T TIGR02244 186 DPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYL 221 (343)
T ss_pred chhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 789999999999999999999999874 335554
No 303
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=46.71 E-value=1.5e+02 Score=30.40 Aligned_cols=81 Identities=15% Similarity=0.149 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC--------c-CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED--------L-SKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG 151 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d--------L-~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~ 151 (534)
...+|++|.+.+...|+.+..+.-.+...+. + ++.++=|+-++.-+ ...++....|-+.|.+...
T Consensus 93 d~ela~~i~~~~~~~g~~~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~-~~~~~~~~~lG~al~~~~~----- 166 (280)
T cd07370 93 DPELAHLIAEEATEHGVKTLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWC-THDIEESRRLGEAIRRAIA----- 166 (280)
T ss_pred CHHHHHHHHHHHHHCCCCeeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecC-CCCHHHHHHHHHHHHHHHH-----
Confidence 4568999999999899887654222222221 1 11232222222211 1345566777777776421
Q ss_pred ccCCCCCeEEEEEecCcch
Q 038595 152 SLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 152 ~~~Lkgl~yAVFGLGDs~Y 170 (534)
-++++++|+|+||-+.
T Consensus 167 ---~~~~~v~iIaSG~lsH 182 (280)
T cd07370 167 ---ASDRRVALLASGSLSH 182 (280)
T ss_pred ---hcCCCEEEEEeccccc
Confidence 1567999999999764
No 304
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=45.53 E-value=18 Score=34.10 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
.+.++|...++++.+++.|+.+.|+||+..+
T Consensus 85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~ 115 (202)
T TIGR01490 85 ESILYPEARDLIRWHKAEGHTIVLVSASLTI 115 (202)
T ss_pred HHhccHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence 4678999999999999999999999999864
No 305
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=45.28 E-value=1.2e+02 Score=31.56 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CCCC-----eEEEEeccCCCC-CCchHHHHHHHHHHhhcCc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SKEA-----LVLIVASSWEDG-KPPEAAKFFMNWIDESAND 147 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~~~-----lvIfv~STYg~G-~pPdna~~Fle~L~e~~~D 147 (534)
...+|+.|.+.+.+.|+++...+--.+|..- + ++.+ ++-+.+.+.... ..|.....|=+.|.+...+
T Consensus 97 ~~~LA~~i~~~~~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~~~p~~~~~~~~~lG~al~~~i~~ 176 (277)
T cd07364 97 HPDLAWHIAQSLILDDFDMTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVVQYPQPTGKRCFALGKAIRRAVES 176 (277)
T ss_pred CHHHHHHHHHHHHHcCCCEEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5789999999999999987755433333211 1 1111 121222222222 2333445555667665321
Q ss_pred ccccccCCCCCeEEEEEecCcch
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y 170 (534)
.-+..+++|+|+|+.+.
T Consensus 177 ------~~rd~rV~iIaSG~lSH 193 (277)
T cd07364 177 ------YDEDLKVAIWGTGGMSH 193 (277)
T ss_pred ------cCcCCCEEEEecCcccc
Confidence 11567899999999875
No 306
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=44.34 E-value=21 Score=36.31 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCC
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNA 491 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNG 491 (534)
.+.+||...+++++++++|+.++++||=
T Consensus 112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR 139 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRGDSIYFITGR 139 (237)
T ss_pred cCcchHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3778999999999999999999999994
No 307
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=44.18 E-value=55 Score=27.55 Aligned_cols=39 Identities=18% Similarity=-0.010 Sum_probs=31.5
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceE--EECCCCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFD--LVDPQTY 107 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~--V~dL~d~ 107 (534)
+++++.+|--||+..++..|.+.+.+.++... ..+++++
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~ 42 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDEL 42 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhC
Confidence 48999999999999999999999998887544 4444444
No 308
>PF04295 GD_AH_C: D-galactarate dehydratase / Altronate hydrolase, C terminus; InterPro: IPR007392 This domain is found at the C terminus of D-galactarate dehydratase (4.2.1.42 from EC) which is thought to catalyse the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, [] and altronate hydrolase (altronic acid hydratase, 4.2.1.7 from EC), which catalyses D-altronate = 2-keto-2-deoxygluconate + H2O []. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core []. The N-terminal is represented by IPR007389 from INTERPRO.; GO: 0016836 hydro-lyase activity
Probab=44.10 E-value=4.4e+02 Score=29.12 Aligned_cols=129 Identities=16% Similarity=0.139 Sum_probs=79.3
Q ss_pred CCCcEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhc
Q 038595 66 NPNKGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESA 145 (534)
Q Consensus 66 ~~~kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~ 145 (534)
.|+.|+|+..+ +-+..+|++|++.+.... ..++.-+-++.+.-+||-+...++.+...+.|....
T Consensus 16 iRN~v~Iiptv--~C~~~va~~ia~~~~~~~-------------~~~~~vdGvv~l~h~~GC~~~g~d~e~~~rtL~g~a 80 (396)
T PF04295_consen 16 IRNYVLIIPTV--NCSNTVARRIARRFERER-------------LAYPNVDGVVALPHPYGCGQLGEDLELTRRTLAGLA 80 (396)
T ss_pred eccEEEEEecc--cccHHHHHHHHHHHhhhh-------------cccCCCCCeEECCCCCCcCCcchhHHHHHHHHHHHc
Confidence 35656776655 467778888888876431 123445568889999999988888877778787653
Q ss_pred CcccccccCCCCC-eEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCC--CcHHHHHHHHHHHHHHHH
Q 038595 146 NDFRVGSLLLSNC-KFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGG--ELDVVFEDWSKRVVAILK 222 (534)
Q Consensus 146 ~DFRv~~~~Lkgl-~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g--~~e~~f~eW~~~L~~~L~ 222 (534)
. . .|+ .+-|+|+|=- +.....+.+.+.+.|.+++.-+ .+.+..+ +.-+...+|..++++.+.
T Consensus 81 ~------h--PNvggvlvvgLGCE------~~~~~~l~~~i~~~g~kpv~~l-~iQ~~GGt~~~i~~~~~~~~~l~~~a~ 145 (396)
T PF04295_consen 81 R------H--PNVGGVLVVGLGCE------NNQPERLAEAIAERGPKPVEFL-SIQEEGGTEDTIEAGVELARELLEEAN 145 (396)
T ss_pred c------C--CCeeeEEEEecCCc------cCcHHHHHHhhhccCCCceEEE-EEeehhhHHHHHHHHHHHHHHHHHHhc
Confidence 2 1 233 3567788721 2346677777888887666432 3322211 122345567777777654
Q ss_pred hc
Q 038595 223 SG 224 (534)
Q Consensus 223 ~~ 224 (534)
..
T Consensus 146 ~~ 147 (396)
T PF04295_consen 146 AQ 147 (396)
T ss_pred cC
Confidence 43
No 309
>PLN02940 riboflavin kinase
Probab=43.74 E-value=28 Score=37.44 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=40.1
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcC------C-CceEEEEe----eCCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLK------P-VTQLYVSV----DAATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~------~-v~qlyvSl----DA~~~e~y~~I~r 523 (534)
..++|.+.++++.|++.|+++.++||+........|. . .+.+..+= --|+++.|..+.+
T Consensus 92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~ 161 (382)
T PLN02940 92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAK 161 (382)
T ss_pred CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHH
Confidence 4578999999999999999999999998643322221 1 33333322 2467777777654
No 310
>cd07952 ED_3B_like Uncharacterized class III extradiol dioxygenases. This subfamily is composed of proteins of unknown function with similarity to the catalytic B subunit of class III extradiol dioxygenases. Class III extradiol dioxygenases use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. They play key roles in the degradation of aromatic compounds.
Probab=41.83 E-value=1.4e+02 Score=30.24 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhhCCCceEEECC---------CCCCccC-----cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhc
Q 038595 80 TSKTLAKRLHALLTSNDLLFDLVDP---------QTYEPED-----LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESA 145 (534)
Q Consensus 80 tTE~lAe~La~~L~~~Gl~v~V~dL---------~d~d~~d-----L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~ 145 (534)
....+|+.|.+.+...|+++..++. .-+|..- +....-+|.++. +.-..++....|-+.|.+..
T Consensus 78 ~d~ela~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHG~~VPL~fl~~~pvV~is~--~~~~~~~~~~~lG~aL~~~~ 155 (256)
T cd07952 78 NDRELANEIYKSARADGIPVLGINFATSSGDNSDFPLDWGELIPLSFLKKRPIVLITP--PRLLPREELVEFGRALGKAL 155 (256)
T ss_pred CCHHHHHHHHHHHHHcCCceeeccchhhccccCCCCCCccccccHhhCCCCCeEEEcc--ccCCCHHHHHHHHHHHHHHH
Confidence 4678999999999888887665541 1111110 111222333332 21224555667777776642
Q ss_pred CcccccccCCCCCeEEEEEecCcchHH------HHHHHHHHHHHHHHH
Q 038595 146 NDFRVGSLLLSNCKFAVFGVGSKSYEK------TFNMVAKDLSKKMRE 187 (534)
Q Consensus 146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e------~Fc~aAK~LDk~L~k 187 (534)
.+ .+.+++|+|+||-+.-. .|...++.+|+|+.+
T Consensus 156 ~~--------~~~~vliIaSGdlSH~l~~~~p~~~~~~a~~fD~~~~~ 195 (256)
T cd07952 156 EG--------YEKRVAVIISADHAHTHDPDGPYGYSPDAAEYDAAIVE 195 (256)
T ss_pred Hh--------cCCcEEEEEecCccccCCCCCCCCCCcchHHHHHHHHH
Confidence 11 35789999999865310 112345666666544
No 311
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=41.73 E-value=77 Score=32.83 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=33.2
Q ss_pred ccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 443 VTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 443 ~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
.+.+.|.+.. -.++..++|...+|++.++++|++++++||-.
T Consensus 103 ~~~~~w~~wv--------~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~ 144 (266)
T TIGR01533 103 FDPETWDKWV--------QAAQAKPVAGALDFLNYANSKGVKIFYVSNRS 144 (266)
T ss_pred CCHHHHHHHH--------HcCCCCcCccHHHHHHHHHHCCCeEEEEeCCC
Confidence 4556565542 12566689999999999999999999999976
No 312
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=41.68 E-value=38 Score=33.25 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=33.7
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEE
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVS 509 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvS 509 (534)
-.|=.-|++.+.+..+++.|+++.+++|.+--.+-..+.+++.-||+
T Consensus 43 d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~ 89 (175)
T COG2179 43 DNPDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFIY 89 (175)
T ss_pred cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCceee
Confidence 56777899999999999999999999997644333233333444443
No 313
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=41.21 E-value=26 Score=32.19 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=24.5
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
++|.+.|+++.|+ .++.+.++||+...
T Consensus 46 l~pG~~e~L~~L~-~~~~l~I~Ts~~~~ 72 (148)
T smart00577 46 KRPGVDEFLKRAS-ELFELVVFTAGLRM 72 (148)
T ss_pred ECCCHHHHHHHHH-hccEEEEEeCCcHH
Confidence 4899999999999 57999999999975
No 314
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=41.21 E-value=19 Score=34.10 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.1
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcC
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTN 490 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTN 490 (534)
+++|.+.+.++.+++.|+.+.++||
T Consensus 29 ~~~~~v~~~L~~l~~~Gy~IvIvTN 53 (159)
T PF08645_consen 29 FFPPGVPEALRELHKKGYKIVIVTN 53 (159)
T ss_dssp EC-TTHHHHHHHHHHTTEEEEEEEE
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeC
Confidence 3567899999999999999999999
No 315
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.67 E-value=4.5e+02 Score=27.45 Aligned_cols=107 Identities=12% Similarity=0.084 Sum_probs=69.8
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCC-CCCccCc-------CCC---CeEEEE----------------
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQ-TYEPEDL-------SKE---ALVLIV---------------- 121 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~-d~d~~dL-------~~~---~lvIfv---------------- 121 (534)
++.|+....--.+..+++.....+++.|++...+.+. +.+.++| ... .-+++=
T Consensus 35 ~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I 114 (283)
T PRK14192 35 ILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI 114 (283)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc
Confidence 4778888877788888888888888888888877774 2322221 000 011111
Q ss_pred --------eccCCCCC--------CchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHH
Q 038595 122 --------ASSWEDGK--------PPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKM 185 (534)
Q Consensus 122 --------~STYg~G~--------pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L 185 (534)
+.|.+.|. .|.+...|++.|+.. ...++|+++.|+|-| +-+++-+...|
T Consensus 115 ~~aKDVdg~n~~n~G~l~~~~~~~~p~T~~gii~~L~~~-------~i~l~Gk~vvViG~g--------g~vGkpia~~L 179 (283)
T PRK14192 115 SLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMRLLKAY-------NIELAGKHAVVVGRS--------AILGKPMAMML 179 (283)
T ss_pred CHHHhcCCCCccccCccccCCCcccCCcHHHHHHHHHHc-------CCCCCCCEEEEECCc--------HHHHHHHHHHH
Confidence 11223333 355557788888764 247899999999975 23578888888
Q ss_pred HHcCC
Q 038595 186 RELGA 190 (534)
Q Consensus 186 ~kLGA 190 (534)
...||
T Consensus 180 ~~~ga 184 (283)
T PRK14192 180 LNANA 184 (283)
T ss_pred HhCCC
Confidence 88898
No 316
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=40.22 E-value=61 Score=35.72 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=37.5
Q ss_pred ccHHHhhhccCCceEEEeec--CCCCCC-ccHHHHHHHHHhcCCcEEEEc
Q 038595 443 VTLERLNEGLTPRHCALSLV--GEPIMY-PEINTLVDELHRRRISTFLVT 489 (534)
Q Consensus 443 ~~~~~~~ea~~~~h~alSl~--GEPlLy-p~L~elI~~lk~~gi~~~LvT 489 (534)
.+++.++++++++.-+|-+. |-|++. .+|.++++.+|++|+.+.+..
T Consensus 135 ~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~ 184 (432)
T PRK06702 135 LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDN 184 (432)
T ss_pred CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEC
Confidence 56788999988766666555 999996 699999999999998765544
No 317
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=40.22 E-value=32 Score=27.96 Aligned_cols=50 Identities=26% Similarity=0.408 Sum_probs=33.7
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEE
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVL 119 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvI 119 (534)
+++|+.++-.|++..++.+|.+.+...++ +..+...+++..+..+.++++
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~~~~~~~-v~~~~~~~~~~~~~~~~DlIi 51 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKLFPEIEI-IDVISLRELEEVDLDDYDLII 51 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHCCCceE-EEEEeHHHHhhCcccCCCEEE
Confidence 48899999999999999999999976544 344444444322233445433
No 318
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.06 E-value=98 Score=29.13 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=37.3
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCCHHH
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAATKDS 517 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~~e~ 517 (534)
++||.+|+ .+++.+.++.+|++|.+|..+||...-. +.++.. +.+.+...++..
T Consensus 106 I~iS~SG~---t~~~i~~~~~ak~~Ga~vI~IT~~~~s~-La~~aD---~~l~~~~~~~~~ 159 (177)
T cd05006 106 IGISTSGN---SPNVLKALEAAKERGMKTIALTGRDGGK-LLELAD---IEIHVPSDDTPR 159 (177)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHCCCEEEEEeCCCCCc-hhhhCC---EEEEeCCCChHH
Confidence 56666797 6799999999999999999999875421 333433 445555555443
No 319
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=39.84 E-value=9.8 Score=33.14 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=30.0
Q ss_pred CCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEc-CCCCHHH
Q 038595 453 TPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVT-NAQFPDK 496 (534)
Q Consensus 453 ~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvT-NGtlpe~ 496 (534)
++.-+++|+.|+-+|-.+|..|+..|+++|.++.|.- +...|+.
T Consensus 23 kIqGItfslDg~efl~eri~~L~~~L~kRgv~v~L~~~~S~yp~l 67 (86)
T PF09153_consen 23 KIQGITFSLDGEEFLRERISRLIEFLKKRGVSVSLDEEPSDYPEL 67 (86)
T ss_dssp SEEEEEEESSHHHHHH-HHHHHHHHHHHTT------B---SHHHH
T ss_pred ceeeEEEEeccHHHHHHHHHHHHHHHHhcCceeEEeecCCCchHH
Confidence 3567899999999999999999999999999987654 3445764
No 320
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=39.71 E-value=2.1e+02 Score=30.71 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCC----CCcc------C-cCCCC--eEEEEeccCCCC--CCchHHHHHHHHHHhhc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQT----YEPE------D-LSKEA--LVLIVASSWEDG--KPPEAAKFFMNWIDESA 145 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d----~d~~------d-L~~~~--lvIfv~STYg~G--~pPdna~~Fle~L~e~~ 145 (534)
...+|+.|.+.+.+.|+++..++-.+ +|.. . +++.+ +|=+.+.++... ..+.....|-+.|.+..
T Consensus 154 d~eLA~~I~~~l~~~G~d~~~~~~~~~~~glDHG~~~pl~~l~p~~dipVVpIsl~~~~~P~~~s~~~~~~lG~aL~~~i 233 (335)
T PRK13363 154 VPELARHMIRRLVDDGFDITALDRLPDGEGEGHAFGFVHRQLMKDNVLPTVPVLVNTFYPPNQPTPRRCIALGRSLRRAI 233 (335)
T ss_pred CHHHHHHHHHHHHHcCCCeeeecccccccCCCccchhhHHHhcCCCCCcEEEEEeccCCCcCCCCHHHHHHHHHHHHHHH
Confidence 36799999999999999877544222 2211 1 12223 332333333221 22345566667776653
Q ss_pred CcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHH
Q 038595 146 NDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRE 187 (534)
Q Consensus 146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~k 187 (534)
. ..-+.++++|+|+||-+.- -.+..+|+++.+
T Consensus 234 ~------~~~~d~rVlIIaSGdLSH~----l~~~efD~~~l~ 265 (335)
T PRK13363 234 R------SWPEDARVAVIASGGLSHF----VIDEELDRLIID 265 (335)
T ss_pred H------hcCcCCCEEEEEeCccccC----CcHHHHHHHHHH
Confidence 1 1124579999999998642 124566666644
No 321
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=39.01 E-value=28 Score=35.31 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=26.5
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
-+.+.++...+|+++++++|++++++||.+
T Consensus 111 ~~s~p~~~a~elL~~l~~~G~~i~iVTnr~ 140 (237)
T TIGR01672 111 EFSIPKEVARQLIDMHQRRGDAIFFVTGRT 140 (237)
T ss_pred cCCcchhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 456777789999999999999999999983
No 322
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=38.26 E-value=45 Score=29.09 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=29.1
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
.++||.+|+. +++.+.++.+|++|.++..+||...
T Consensus 50 ~I~iS~sG~t---~e~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 50 VIAISQSGET---ADTLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred EEEEeCCcCC---HHHHHHHHHHHHcCCeEEEEECCCC
Confidence 4677777984 5789999999999999999998743
No 323
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=37.92 E-value=50 Score=26.58 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=26.3
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEc
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVT 489 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvT 489 (534)
.+.||..|+ .+++.++++.+|++|.++..+|
T Consensus 51 ~i~iS~sg~---t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 51 VIALSYSGR---TEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred EEEEECCCC---CHHHHHHHHHHHHcCCeEEEEe
Confidence 456677788 4889999999999999988888
No 324
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.91 E-value=43 Score=31.52 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=28.8
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
.+.||.+|+ .+++.++++.+|++|.+|.++|+-..
T Consensus 76 ~I~iS~sG~---t~~~i~~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 76 LIAISGSGE---TESLVTVAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred EEEEeCCCC---cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 356666787 67899999999999999999998554
No 325
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=37.45 E-value=42 Score=31.71 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.1
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
.++||.+|+ .+++.++++.+|++|.++..+|+-..
T Consensus 79 vI~iS~sG~---t~~~i~~~~~ak~~g~~iI~IT~~~~ 113 (179)
T cd05005 79 LIAISGSGE---TSSVVNAAEKAKKAGAKVVLITSNPD 113 (179)
T ss_pred EEEEcCCCC---cHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 366677798 78899999999999999999998543
No 326
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=37.27 E-value=44 Score=29.63 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=49.0
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC-cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcc
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d-L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DF 148 (534)
|+++-++ .-||..+|+++.+.++++|+++++......+..+ +.+.+ +|++.|- ....++.+++..
T Consensus 3 Ill~C~~-GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~D-vill~PQ---------v~~~~~~i~~~~--- 68 (99)
T cd05565 3 VLVLCAG-GGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYD-LVILAPQ---------MASYYDELKKDT--- 68 (99)
T ss_pred EEEECCC-CCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCC-EEEEcCh---------HHHHHHHHHHHh---
Confidence 5666644 4788999999999999999988766555443332 33445 4444432 346667777653
Q ss_pred cccccCCCCCeEEEEE
Q 038595 149 RVGSLLLSNCKFAVFG 164 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFG 164 (534)
.-.|+.++++=
T Consensus 69 -----~~~~ipv~~I~ 79 (99)
T cd05565 69 -----DRLGIKLVTTT 79 (99)
T ss_pred -----hhcCCCEEEeC
Confidence 22467777774
No 327
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.06 E-value=39 Score=29.43 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=29.0
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQ 105 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~ 105 (534)
+|+|+.++--+|+ .+++.+.+.+.++|+++++....
T Consensus 5 ~ILl~C~~G~sSS-~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 5 NILLLCAAGMSTS-LLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred EEEEECCCchhHH-HHHHHHHHHHHHCCCcEEEEEec
Confidence 4888888887766 69999999999999987655544
No 328
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=36.98 E-value=43 Score=32.74 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=28.4
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
+..+||.+.+++..+++.|++.+++||....
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~ 117 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPER 117 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHH
Confidence 5688999999999999999999999998763
No 329
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=36.16 E-value=51 Score=29.23 Aligned_cols=35 Identities=11% Similarity=-0.017 Sum_probs=29.0
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
-++||.+|| .+++.+.++.+|++|.++..+||...
T Consensus 51 ~I~iS~SG~---t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 51 VILASHSGN---TKETVAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred EEEEeCCCC---ChHHHHHHHHHHHcCCeEEEEECCCC
Confidence 367777798 57899999999999999999998653
No 330
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=36.01 E-value=1e+02 Score=30.82 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=48.5
Q ss_pred cHHHhhhcc---CCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC-CHHHHhhcCC-Cce-EEEEeeCCC
Q 038595 444 TLERLNEGL---TPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ-FPDKIKLLKP-VTQ-LYVSVDAAT 514 (534)
Q Consensus 444 ~~~~~~ea~---~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt-lpe~l~~L~~-v~q-lyvSlDA~~ 514 (534)
+++++-+.+ .++++++...=. +++.++++.+|+.|++.-|.-|=. -.+.++.+++ +|. +.+|++...
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~----~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGf 141 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEAS----EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGF 141 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc----ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCC
Confidence 466665444 578877776532 568899999999999999888854 4577777776 666 577877653
No 331
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=35.70 E-value=30 Score=33.49 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=26.4
Q ss_pred cCCC-CCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC
Q 038595 462 VGEP-IMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP 502 (534)
Q Consensus 462 ~GEP-lLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~ 502 (534)
.||+ -|||+..++++.|++.|+.+.+.|--.-|+..++++.
T Consensus 40 ~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 40 RGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp T--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 4655 4699999999999999999999998888877665553
No 332
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=35.70 E-value=1.3e+02 Score=26.38 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=30.2
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY 107 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~ 107 (534)
+.+.|....|-+|+++..|++.|.++|+++.++....-
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 34567788999999999999999999999999965543
No 333
>PLN02645 phosphoglycolate phosphatase
Probab=35.66 E-value=43 Score=34.73 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=24.3
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
++|.-.++|+.++++|++++++||.+.
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~~ 71 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNST 71 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCCC
Confidence 459999999999999999999999773
No 334
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=35.26 E-value=57 Score=33.68 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=26.8
Q ss_pred HHHHHHHHhc-CCcEEEEcCCCCHHHHhhcCCCceEEEEeeC-CCHHHHHhhcC
Q 038595 472 NTLVDELHRR-RISTFLVTNAQFPDKIKLLKPVTQLYVSVDA-ATKDSLKAIDR 523 (534)
Q Consensus 472 ~elI~~lk~~-gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA-~~~e~y~~I~r 523 (534)
.+.++++|++ |..+--.+.-+-.+.++.|..--...||+|. .|.+..++|-+
T Consensus 77 ~d~lK~lke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~ 130 (275)
T COG1856 77 KDELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYK 130 (275)
T ss_pred HHHHHHHHHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEeecCChHHHHHHHc
Confidence 3445666665 4433222222225566666652234567775 45666666654
No 335
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=35.10 E-value=54 Score=32.38 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=35.1
Q ss_pred CCccHHHHHHHHHhcC--CcE-EEEcCCCCHHHHhhcCC--CceEEEEeeCCCH
Q 038595 467 MYPEINTLVDELHRRR--IST-FLVTNAQFPDKIKLLKP--VTQLYVSVDAATK 515 (534)
Q Consensus 467 Lyp~L~elI~~lk~~g--i~~-~LvTNGtlpe~l~~L~~--v~qlyvSlDA~~~ 515 (534)
+.+...++++.+++.+ ..+ .+++|+ .+.++.+.+ ++.+.|++++.+.
T Consensus 49 ~~~~~~~~i~~l~~~~~~~~~~~l~~~~--~~~i~~a~~~g~~~i~i~~~~s~~ 100 (265)
T cd03174 49 QMEDDWEVLRAIRKLVPNVKLQALVRNR--EKGIERALEAGVDEVRIFDSASET 100 (265)
T ss_pred cCCCHHHHHHHHHhccCCcEEEEEccCc--hhhHHHHHhCCcCEEEEEEecCHH
Confidence 4578889999999886 665 677887 445555544 7999999998863
No 336
>PRK10444 UMP phosphatase; Provisional
Probab=34.85 E-value=78 Score=32.02 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
.++|.-.++|+.|++.|+++.++||.+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~ 44 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPS 44 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCC
Confidence 5689999999999999999999999886
No 337
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=34.73 E-value=3e+02 Score=29.45 Aligned_cols=97 Identities=9% Similarity=0.132 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCC----CCCccC-------cCCCC--eEEEEeccCCCC-C-CchHHHHHHHHHHhhc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQ----TYEPED-------LSKEA--LVLIVASSWEDG-K-PPEAAKFFMNWIDESA 145 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~----d~d~~d-------L~~~~--lvIfv~STYg~G-~-pPdna~~Fle~L~e~~ 145 (534)
...+|+.|.+.+.+.|+++..++-- .+|..- +++.+ +|-+.+.+.-.- . .+.....|=+.|.+..
T Consensus 150 d~eLA~~I~~~l~~~G~dv~~~~~~~~~~~lDHG~~~~l~~~~p~~~iPVVpisin~~~~p~~ps~~r~y~lG~aL~~ai 229 (328)
T cd07366 150 HPELARHLIKHTVADGFDVAALDHLPDTVGIPHAFGFIYRRIMGDLVIPVVPVLINTFYPPNQPSARRCFEFGRAVARAI 229 (328)
T ss_pred CHHHHHHHHHHHHHcCCCeeeecccCcccCCCcchhhHHHHhcCCCCCcEEEEeecCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4679999999999999987653221 122110 12223 233323332211 1 2223455656676653
Q ss_pred CcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHH
Q 038595 146 NDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRE 187 (534)
Q Consensus 146 ~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~k 187 (534)
.+ .-++.+++|+|+|+-+.. + ....+|+++.+
T Consensus 230 ~~------~~~d~rV~IIaSGgLSH~--l--~~~eFD~~~l~ 261 (328)
T cd07366 230 RS------WPGDARVGVIASGGLSHF--V--IDEEFDRRILD 261 (328)
T ss_pred Hh------cCCCCCEEEEEeCccccC--C--ChHHHHHHHHH
Confidence 21 125789999999998762 1 33556666544
No 338
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=34.55 E-value=1.5e+02 Score=30.15 Aligned_cols=59 Identities=22% Similarity=0.143 Sum_probs=40.3
Q ss_pred ccccCCCCCCCCccccc-----ccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 426 AIDKQIPSNDGEEKEGG-----VTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 426 ~~~~~~~~~~~~~~~~~-----~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
-||.-.-||-.-.+..+ .+.+.|.+.. -.|+..--|...+|++.++++|+.++++||=.
T Consensus 83 DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv--------~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~ 146 (229)
T TIGR01675 83 DVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWL--------GKGAAPALPEGLKLYQKIIELGIKIFLLSGRW 146 (229)
T ss_pred ccccccccCHHHHHHhccCCCcCCHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 47777777764332222 3444444432 13666677888899999999999999999966
No 339
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=34.31 E-value=41 Score=32.96 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=32.7
Q ss_pred cccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 442 GVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 442 ~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
|++.+++++.+. +..++|...++|+.+|+.+ ++.++|||...
T Consensus 54 g~~~~~i~~~~~----------~i~l~pga~ell~~lk~~~-~~~IVS~~~~~ 95 (203)
T TIGR02137 54 GLKLGDIQEVIA----------TLKPLEGAVEFVDWLRERF-QVVILSDTFYE 95 (203)
T ss_pred CCCHHHHHHHHH----------hCCCCccHHHHHHHHHhCC-eEEEEeCChHH
Confidence 366677766542 2357999999999999975 99999999863
No 340
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=34.21 E-value=32 Score=37.04 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNA 491 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNG 491 (534)
-+=.+||.+.++++.|++.|+++.++||.
T Consensus 27 ~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 27 DKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred ccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 33567999999999999999999999995
No 341
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=34.10 E-value=56 Score=34.01 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=25.8
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
+||.+.++++.+|++|+.+.++||....
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~ 59 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKNDED 59 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCCCHH
Confidence 3999999999999999999999999764
No 342
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=33.72 E-value=2.3e+02 Score=31.04 Aligned_cols=102 Identities=10% Similarity=0.117 Sum_probs=58.0
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccC-------cCCCCeEEEEeccCCCCCCchHHHHHHHHH
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPED-------LSKEALVLIVASSWEDGKPPEAAKFFMNWI 141 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d-------L~~~~lvIfv~STYg~G~pPdna~~Fle~L 141 (534)
-++|.|||..++++..++.| ++.|+.+.++++..+.|=+ +.+.+.++++=-++..|..-.....+...|
T Consensus 270 ~~iV~~Gs~~~~a~ea~~~L----~~~G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al 345 (407)
T PRK09622 270 VAIVALGTTYESAIVAAKEM----RKEGIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAV 345 (407)
T ss_pred EEEEEEChhHHHHHHHHHHH----HhCCCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHH
Confidence 47888999888877777765 4568888888887664322 234456666655554454434444555555
Q ss_pred HhhcCcccccccCCCCCeE---EEEEecCcch-HHHHHHHHHHHHH
Q 038595 142 DESANDFRVGSLLLSNCKF---AVFGVGSKSY-EKTFNMVAKDLSK 183 (534)
Q Consensus 142 ~e~~~DFRv~~~~Lkgl~y---AVFGLGDs~Y-~e~Fc~aAK~LDk 183 (534)
..... ..... .++|+|...+ ++..-...+++.+
T Consensus 346 ~~~~~---------~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 346 YQTQG---------TKHPVVSNYIYGLGGRDMTIAHLCEIFEELNE 382 (407)
T ss_pred hccCc---------CCCceEeeeEECCCCCCCCHHHHHHHHHHHHh
Confidence 32100 01122 5678877766 3344444444433
No 343
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=33.62 E-value=44 Score=31.55 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
.+||.+.++++.+++. +++.++||+...
T Consensus 68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~ 95 (205)
T PRK13582 68 DPLPGAVEFLDWLRER-FQVVILSDTFYE 95 (205)
T ss_pred CCCCCHHHHHHHHHhc-CCEEEEeCCcHH
Confidence 4599999999999999 999999999874
No 344
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=33.56 E-value=89 Score=25.04 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.4
Q ss_pred EEEeecCCCCCCcc-HHHHHHHHHhcCCcEEEEcCCC
Q 038595 457 CALSLVGEPIMYPE-INTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 457 ~alSl~GEPlLyp~-L~elI~~lk~~gi~~~LvTNGt 492 (534)
..+|.+|+.+-.|. +.++.+.|.+.|+.+.+++.|.
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC
Confidence 45888999886664 6688889999999998888776
No 345
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=33.34 E-value=44 Score=33.10 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=31.5
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCC--HHHHhhcCC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQF--PDKIKLLKP 502 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtl--pe~l~~L~~ 502 (534)
|.++|...++++.+++.|..|.++|-|-. -+.+.+.+.
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg 115 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLG 115 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhC
Confidence 99999999999999999999999998863 344444444
No 346
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=33.22 E-value=51 Score=33.22 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=30.8
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
-++||..|+ .+.+.+.++.+|++|++|.++|+...
T Consensus 179 ~I~iS~sg~---~~~~~~~~~~ak~~ga~iI~IT~~~~ 213 (278)
T PRK11557 179 LLAISYSGE---RRELNLAADEALRVGAKVLAITGFTP 213 (278)
T ss_pred EEEEcCCCC---CHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 367888898 78899999999999999999999765
No 347
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=33.21 E-value=78 Score=27.42 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCce--EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 453 TPRH--CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 453 ~~~h--~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
+++. +.||..|+. +++.+.++.+|++|.++-++|+....
T Consensus 52 ~~~d~vi~is~sg~~---~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 52 DPDDLVIIISYSGET---RELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp STTEEEEEEESSSTT---HHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred cccceeEeeeccccc---hhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 4444 455555765 78899999999999999999976653
No 348
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=32.90 E-value=2.3e+02 Score=28.77 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CCCC--eEEEEeccCCCC-CCchHHHHHHHHHHhhcCccccc
Q 038595 82 KTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SKEA--LVLIVASSWEDG-KPPEAAKFFMNWIDESANDFRVG 151 (534)
Q Consensus 82 E~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~~~--lvIfv~STYg~G-~pPdna~~Fle~L~e~~~DFRv~ 151 (534)
..+|+.|.+.+.+.|+++...+--.+|..- + ...+ ++=+.+.+.... ..+.....|-+.|.+...+
T Consensus 94 ~elA~~i~~~~~~~g~~~a~~~~~~lDHg~~vpL~~l~~~~~~pvVpvsv~~~~~~~~~~~~~~~lG~aL~~~i~~---- 169 (271)
T cd07359 94 ADLARHLLAGLVEDGFDVAFSYELRLDHGITVPLHFLDPDNDVPVVPVLVNCVTPPLPSLRRCYALGRALRRAIES---- 169 (271)
T ss_pred HHHHHHHHHHHHHcCCCeeccCCCCCCcchhhHHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHh----
Confidence 468999999999888854432211122111 1 1122 333333332222 2334455676777765321
Q ss_pred ccCCCCCeEEEEEecCcch
Q 038595 152 SLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 152 ~~~Lkgl~yAVFGLGDs~Y 170 (534)
.+++.+++|+|+||-+.
T Consensus 170 --~~~d~rV~iIaSGdlSH 186 (271)
T cd07359 170 --FPGDLRVAVLGTGGLSH 186 (271)
T ss_pred --cCCCCcEEEEecCcccC
Confidence 23678999999999764
No 349
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=32.65 E-value=46 Score=35.31 Aligned_cols=30 Identities=20% Similarity=0.189 Sum_probs=26.3
Q ss_pred CccHHHHHHHHHhcCCcEEEEcCCCCHHHH
Q 038595 468 YPEINTLVDELHRRRISTFLVTNAQFPDKI 497 (534)
Q Consensus 468 yp~L~elI~~lk~~gi~~~LvTNGtlpe~l 497 (534)
-|.+.++++.|++.|+.+.|+|||..+...
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~ 179 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVV 179 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHH
Confidence 588999999999999999999999876443
No 350
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=32.55 E-value=57 Score=30.36 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=28.0
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
+.||.+|+ .+.+.+.++.+|++|+++..+|+..
T Consensus 84 i~iS~sG~---t~~~~~~~~~a~~~g~~ii~iT~~~ 116 (154)
T TIGR00441 84 LGISTSGN---SKNVLKAIEAAKDKGMKTITLAGKD 116 (154)
T ss_pred EEEcCCCC---CHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56666797 7899999999999999999998754
No 351
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=32.41 E-value=40 Score=32.28 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=28.3
Q ss_pred cHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC
Q 038595 470 EINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP 502 (534)
Q Consensus 470 ~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~ 502 (534)
.|++++++..+.|+.++++|.||+ ...+++..|
T Consensus 74 ~Ig~l~~lae~~g~~v~i~~Ggt~ar~~ik~~~p 107 (158)
T PF01976_consen 74 DIGDLKKLAEKYGYKVYIATGGTLARKIIKEYRP 107 (158)
T ss_pred chhHHHHHHHHcCCEEEEEcChHHHHHHHHHhCC
Confidence 688899999999999999999998 456666665
No 352
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=32.28 E-value=26 Score=34.48 Aligned_cols=35 Identities=37% Similarity=0.711 Sum_probs=25.0
Q ss_pred ccccHHHHHHhhhcCceEEecccceeeehhhhhhhcCCCccccceeeeccCCeeeeecc
Q 038595 296 DMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATP 354 (534)
Q Consensus 296 ~~~~~~~~~~l~~~gy~~~~~h~~vk~c~w~~~~~~~~~~cyk~~fygi~s~~c~~~~p 354 (534)
-|+.|..+++|.+ |.|-.+ --.||||+|-|++-|-
T Consensus 87 SM~~p~v~~s~~~----i~~~k~--------------------VvL~GiEthvCv~qTa 121 (201)
T KOG4044|consen 87 SMVLPPVEDSLKD----IFGGKT--------------------VVLFGIETHVCVLQTA 121 (201)
T ss_pred eeeCchHHHHHHh----ccCCCe--------------------EEEEecchheehHHHH
Confidence 5888999999875 222111 2378999999998764
No 353
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=32.19 E-value=3e+02 Score=28.04 Aligned_cols=85 Identities=11% Similarity=0.076 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------cCC---CCeEEEEeccCCC-CCCchHHHHHHHHHHhhcCcccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------LSK---EALVLIVASSWED-GKPPEAAKFFMNWIDESANDFRV 150 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L~~---~~lvIfv~STYg~-G~pPdna~~Fle~L~e~~~DFRv 150 (534)
...+|++|.+.+...|+++....--.+|..- +.. ..++-+.+.+... ..+++....|-+.|.+...+
T Consensus 89 ~~~LA~~l~~~~~~~~~~~a~~~~~~~DHg~~vPl~~l~~~~~~pvVpisv~~~~~p~~~~~~~~~lG~al~~~~~~--- 165 (269)
T PRK13358 89 HRAFAQAIALHRAADGFDLAQAEELRPDHGVMIPLLFMDPGRRIPVVPVYVNINTDPFPSAKRCAALGEVIRQAVEK--- 165 (269)
T ss_pred CHHHHHHHHHHHHHcCCCeeeccccCCCcchhhhHHHhcCCCCCCEEEEEecccCCCCCCHHHHHHHHHHHHHHHHh---
Confidence 3455888888887777765422111122111 111 2333333444332 23334566677777765211
Q ss_pred cccCCCCCeEEEEEecCcch
Q 038595 151 GSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 151 ~~~~Lkgl~yAVFGLGDs~Y 170 (534)
..-.+.+++|+|+||-+.
T Consensus 166 --~~~~~~rvlvIaSGdlSH 183 (269)
T PRK13358 166 --DRPADERVAVIGTGGLSH 183 (269)
T ss_pred --hCCCCCcEEEEecCCccC
Confidence 011367899999999764
No 354
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=32.16 E-value=38 Score=38.38 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=24.2
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
+||.+.+.++.|++.|+.+.++||-.
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~ 223 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQG 223 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCc
Confidence 79999999999999999999999943
No 355
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=32.16 E-value=70 Score=33.85 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=30.3
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCCC--HHHHhhcCCCce
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQF--PDKIKLLKPVTQ 505 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGtl--pe~l~~L~~v~q 505 (534)
++|.+.++++.+|+.|+++.++|||.. .+.+.+-+.++.
T Consensus 182 l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~ 222 (322)
T PRK11133 182 LMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA 222 (322)
T ss_pred CChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe
Confidence 789999999999999999999999984 344443334343
No 356
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=31.40 E-value=77 Score=32.95 Aligned_cols=84 Identities=23% Similarity=0.299 Sum_probs=60.5
Q ss_pred eeeeecccc---ccc----cccccccCCCCCCCCcccccccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCC
Q 038595 411 IFVLLDFFY---FGT----VSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRI 483 (534)
Q Consensus 411 ~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi 483 (534)
.+|++||+- -++ +...++|.|---|-+.-|-+ ..+-+..|..-+ ++|--.|.|++---=.+|.-.++++|+
T Consensus 27 d~Vy~E~YTS~~~~~~~e~le~~~gkev~~~~R~dlE~~-~~~il~~a~~~~-Vall~~GDpmvATTH~~L~~~A~~~Gi 104 (260)
T COG1798 27 DRVYAEFYTSILLGSNLEKLEELIGKEVILLDREDLEEN-SRSILDRAKDKD-VALLVAGDPMVATTHVDLRIEAKRRGI 104 (260)
T ss_pred CEEEEEeeecccccchHHHHHHHhCCceEeccHHHHhhc-chhHHHHHhcCC-EEEEecCCcceehhHHHHHHHHHHcCC
Confidence 467777653 222 23456666666666666666 666677777767 888888999997655778889999999
Q ss_pred cEEEEcCCCCHHH
Q 038595 484 STFLVTNAQFPDK 496 (534)
Q Consensus 484 ~~~LvTNGtlpe~ 496 (534)
.|.++-|.+.-..
T Consensus 105 ~v~vIh~~Si~~A 117 (260)
T COG1798 105 EVRVIHGASIINA 117 (260)
T ss_pred cEEEEcccHHHHH
Confidence 9999999986433
No 357
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=31.32 E-value=4.3e+02 Score=24.48 Aligned_cols=122 Identities=15% Similarity=0.122 Sum_probs=70.8
Q ss_pred EEEEEECccchHHHHHHHHHHHH-hhCCCceEEECCC-CCCccCcC----CCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595 70 GKLFFISQTGTSKTLAKRLHALL-TSNDLLFDLVDPQ-TYEPEDLS----KEALVLIVASSWEDGKPPEAAKFFMNWIDE 143 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L-~~~Gl~v~V~dL~-d~d~~dL~----~~~lvIfv~STYg~G~pPdna~~Fle~L~e 143 (534)
..|+-++.-|-...+...+...+ +..|++ ++++- +..++++. +.+.=++++|+.... .-..+..+.+.|++
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~e--Vi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~-~~~~~~~~~~~L~~ 80 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFE--VINLGVMTSQEEFIDAAIETDADAILVSSLYGH-GEIDCRGLREKCIE 80 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCE--EEECCCCCCHHHHHHHHHHcCCCEEEEcCcccc-CHHHHHHHHHHHHh
Confidence 46788888898888887766554 678876 45554 34445542 344444444554433 33356777777765
Q ss_pred hcCcccccccCCCCCeEEEEEe---cCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHHHHH
Q 038595 144 SANDFRVGSLLLSNCKFAVFGV---GSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSKRVV 218 (534)
Q Consensus 144 ~~~DFRv~~~~Lkgl~yAVFGL---GDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~~L~ 218 (534)
. .+.++++.|=|. ++..| ....+.|+++|...+|+.+. ++ +.+..|..+.+
T Consensus 81 ~---------~~~~~~i~vGG~~~~~~~~~--------~~~~~~l~~~G~~~vf~~~~------~~-~~i~~~l~~~~ 134 (137)
T PRK02261 81 A---------GLGDILLYVGGNLVVGKHDF--------EEVEKKFKEMGFDRVFPPGT------DP-EEAIDDLKKDL 134 (137)
T ss_pred c---------CCCCCeEEEECCCCCCccCh--------HHHHHHHHHcCCCEEECcCC------CH-HHHHHHHHHHh
Confidence 3 344555444442 22233 34556788899988887543 12 34555655443
No 358
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=31.24 E-value=62 Score=30.79 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 155 LSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 155 Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
+...+++|+-.||.... .++..+..+..+|+++|+....
T Consensus 2 ~~~~rv~vit~~d~~~~-~~d~n~~~l~~~L~~~G~~v~~ 40 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTE-EDDTSGQYLVERLTEAGHRLAD 40 (163)
T ss_pred CCccEEEEEEEeCcCCc-cCCCcHHHHHHHHHHCCCeEEE
Confidence 46789999999998763 6788899999999999986543
No 359
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=30.90 E-value=1.4e+02 Score=30.43 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred cHHHhhhcc---CCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-Cce-EEEEeeC-----
Q 038595 444 TLERLNEGL---TPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-VTQ-LYVSVDA----- 512 (534)
Q Consensus 444 ~~~~~~ea~---~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-v~q-lyvSlDA----- 512 (534)
+++++-+.+ .++.+++... -.+++.++|+++|+.|++.-++=|=.. .+.++.+++ +|. +.+|++-
T Consensus 72 ~p~~~i~~fa~agad~It~H~E----~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ 147 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAE----ATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQ 147 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEec----cCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCccc
Confidence 456655544 4777777766 778999999999999999999988544 467776665 555 3556542
Q ss_pred -CCHHHHHhhc
Q 038595 513 -ATKDSLKAID 522 (534)
Q Consensus 513 -~~~e~y~~I~ 522 (534)
-.++++.||.
T Consensus 148 ~Fi~~~l~Ki~ 158 (220)
T COG0036 148 KFIPEVLEKIR 158 (220)
T ss_pred ccCHHHHHHHH
Confidence 3445555554
No 360
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=30.40 E-value=58 Score=34.05 Aligned_cols=43 Identities=12% Similarity=0.258 Sum_probs=34.0
Q ss_pred ccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 443 VTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 443 ~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
++.+.++++..- ..-.+.|.+.+|++.++++|+++.++|+|..
T Consensus 106 ~~~e~i~~~v~~--------~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~ 148 (277)
T TIGR01544 106 FPKAKIKEIVAE--------SDVMLKDGYENFFDKLQQHSIPVFIFSAGIG 148 (277)
T ss_pred CCHHHHHHHHhh--------cCCccCcCHHHHHHHHHHCCCcEEEEeCCcH
Confidence 666777666521 1344589999999999999999999999986
No 361
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=30.37 E-value=72 Score=27.88 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=0.0
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcC
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTN 490 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTN 490 (534)
+.+|..|+. +++.+.++.+|++|+++..+|+
T Consensus 52 i~iS~sG~t---~~~~~~~~~a~~~g~~vi~iT~ 82 (128)
T cd05014 52 IAISNSGET---DELLNLLPHLKRRGAPIIAITG 82 (128)
T ss_pred EEEeCCCCC---HHHHHHHHHHHHCCCeEEEEeC
No 362
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=30.28 E-value=81 Score=29.22 Aligned_cols=48 Identities=13% Similarity=-0.012 Sum_probs=31.5
Q ss_pred HHHHHHhcCCcEEEEcCCCCHHHHhhcC--CCceEEEEeeCCCHHHHHhhc
Q 038595 474 LVDELHRRRISTFLVTNAQFPDKIKLLK--PVTQLYVSVDAATKDSLKAID 522 (534)
Q Consensus 474 lI~~lk~~gi~~~LvTNGtlpe~l~~L~--~v~qlyvSlDA~~~e~y~~I~ 522 (534)
.|+.||++|+.++++||...+...+.+. .++.. +.-.-+.++.+.++.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~~-~~~~~~k~~~~~~~~ 85 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITHL-YQGQSNKLIAFSDIL 85 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCEE-EecccchHHHHHHHH
Confidence 7999999999999999999864443332 24432 333345555555554
No 363
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=30.25 E-value=2.8e+02 Score=28.76 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CCC----CeEEEEeccC-CCCCCchHHHHHHHHHHhhcCcc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SKE----ALVLIVASSW-EDGKPPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~~----~lvIfv~STY-g~G~pPdna~~Fle~L~e~~~DF 148 (534)
...+|+.|.+.+.+.|+++....--.+|..- + +.. .++=+.+.+. .-...|.....|=+.|.+...
T Consensus 97 ~~~LA~~i~~~~~~~g~d~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvV~i~~n~~~~p~~~~~~~~~lG~al~~~i~-- 174 (276)
T cd07949 97 DPELSWHLIESLVEDEFDITTCQEMLVDHACTLPMQLFWPGAEWPIKVVPVSINTVQHPLPSPKRCFKLGQAIGRAIE-- 174 (276)
T ss_pred CHHHHHHHHHHHHHcCCCeeccCCCCCCcchhhHHHHhcCccCCCCCEEEEEeccCCCCCCCHHHHHHHHHHHHHHHH--
Confidence 5689999999999999976544222232111 1 111 1233333333 212233344556666766531
Q ss_pred cccccCC-CCCeEEEEEecCcch
Q 038595 149 RVGSLLL-SNCKFAVFGVGSKSY 170 (534)
Q Consensus 149 Rv~~~~L-kgl~yAVFGLGDs~Y 170 (534)
.+ ++.+++|+|+||-+.
T Consensus 175 -----~~~~d~rv~iiaSG~lSH 192 (276)
T cd07949 175 -----SYPEDLRVVVLGTGGLSH 192 (276)
T ss_pred -----hcCcCCCEEEEEeCcccc
Confidence 22 457999999999875
No 364
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=30.11 E-value=37 Score=37.72 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=31.8
Q ss_pred CccHHHHHHHHHhcCCcEEEEcCCCCH---HHHhhcCCC------ce----EEEEeeCCCHHHHH
Q 038595 468 YPEINTLVDELHRRRISTFLVTNAQFP---DKIKLLKPV------TQ----LYVSVDAATKDSLK 519 (534)
Q Consensus 468 yp~L~elI~~lk~~gi~~~LvTNGtlp---e~l~~L~~v------~q----lyvSlDA~~~e~y~ 519 (534)
.|.|..+++.+|+.|.++||+||.... -.+.-++.- +| ..|-++|.-|.=|.
T Consensus 185 ~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~ 249 (448)
T PF05761_consen 185 DPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFT 249 (448)
T ss_dssp -CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHC
T ss_pred CchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccC
Confidence 368999999999999999999998763 334444432 33 46666776666443
No 365
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=29.94 E-value=64 Score=32.42 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=28.8
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTN 490 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTN 490 (534)
.++||.+|+ .+.+.++++.+|++|.+|.++||
T Consensus 179 vI~iS~sG~---t~~~~~~~~~ak~~g~~vI~IT~ 210 (284)
T PRK11302 179 VVLISHTGR---TKSLVELAQLARENGATVIAITS 210 (284)
T ss_pred EEEEeCCCC---CHHHHHHHHHHHHcCCeEEEECC
Confidence 367888899 68899999999999999999997
No 366
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=29.79 E-value=56 Score=30.85 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=28.9
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCH---HHHhhcCC
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFP---DKIKLLKP 502 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlp---e~l~~L~~ 502 (534)
-++|++.+|++.+++. +.+.+.|||+-. .+++.|-+
T Consensus 58 ~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp 96 (156)
T TIGR02250 58 KLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDP 96 (156)
T ss_pred EECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCc
Confidence 3589999999999966 999999999974 44555555
No 367
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=29.43 E-value=1.4e+02 Score=30.03 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=46.6
Q ss_pred cHHHhhhcc---CCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCC-CCHHHHhhcCC-Cce-EEEEeeCC
Q 038595 444 TLERLNEGL---TPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNA-QFPDKIKLLKP-VTQ-LYVSVDAA 513 (534)
Q Consensus 444 ~~~~~~ea~---~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNG-tlpe~l~~L~~-v~q-lyvSlDA~ 513 (534)
+++++-+.+ .++.+++...-. +++.++++++|+.|++.-|.-|= |-.+.++.+++ +|. +-+|++-.
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~----~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PG 144 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEAS----RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPG 144 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc----ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence 466654443 578777776632 46889999999999999999885 55677777776 665 45566543
No 368
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=29.09 E-value=66 Score=28.74 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=47.0
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc---CCCCeEEEEeccCCCCCCchHHHHHHHHHHhhc
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL---SKEALVLIVASSWEDGKPPEAAKFFMNWIDESA 145 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL---~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~ 145 (534)
+|+++-|+-.+|+ .+|+.+.+.++++|+++.+...+..+.++. .+.+++++ . |+ ..+-++.+++..
T Consensus 3 kILlvCg~G~STS-lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll-~--------PQ-i~~~~~~i~~~~ 71 (104)
T PRK09590 3 KALIICAAGMSSS-MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLV-S--------PQ-TKMYFKQFEEAG 71 (104)
T ss_pred EEEEECCCchHHH-HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEE-C--------hH-HHHHHHHHHHHh
Confidence 4788888888665 999999999999999877643332222221 23454443 2 32 444555565542
Q ss_pred CcccccccCCCCCeEEEEEe
Q 038595 146 NDFRVGSLLLSNCKFAVFGV 165 (534)
Q Consensus 146 ~DFRv~~~~Lkgl~yAVFGL 165 (534)
.-.++.+.++-.
T Consensus 72 --------~~~~ipv~~I~~ 83 (104)
T PRK09590 72 --------AKVGKPVVQIPP 83 (104)
T ss_pred --------hhcCCCEEEeCH
Confidence 224677777643
No 369
>PRK15452 putative protease; Provisional
Probab=28.88 E-value=92 Score=34.61 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=34.8
Q ss_pred cHHHhhhccCCceEEEeecCC---------CCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 444 TLERLNEGLTPRHCALSLVGE---------PIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 444 ~~~~~~ea~~~~h~alSl~GE---------PlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
++|.+..|+.---=||.+.|+ ++-..+|.+.|+++|++|.++++.+|...
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~ 70 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAP 70 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcC
Confidence 467777776433333444333 44456899999999999999999999654
No 370
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=28.85 E-value=1.1e+02 Score=33.19 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=44.0
Q ss_pred CCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHH
Q 038595 107 YEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186 (534)
Q Consensus 107 ~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~ 186 (534)
+|.+.+.+..+.+.-+|.++.... ++.-+..|-.... -....|+|++++|+|+| ..++.+.++|+
T Consensus 72 iD~~~~~~~gI~v~napg~na~aV---AE~~~~~lL~l~r---~~g~~L~gktvGIIG~G---------~IG~~vA~~l~ 136 (378)
T PRK15438 72 VDEAWLKQAGIGFSAAPGCNAIAV---VEYVFSSLLMLAE---RDGFSLHDRTVGIVGVG---------NVGRRLQARLE 136 (378)
T ss_pred cCHHHHHHCCCEEEECCCcCchHH---HHHHHHHHHHHhc---cCCCCcCCCEEEEECcC---------HHHHHHHHHHH
Confidence 333334455666666666553332 3333333332221 11346899999999987 45788888999
Q ss_pred HcCCceec
Q 038595 187 ELGAGEVL 194 (534)
Q Consensus 187 kLGA~rV~ 194 (534)
.+|.+.++
T Consensus 137 a~G~~V~~ 144 (378)
T PRK15438 137 ALGIKTLL 144 (378)
T ss_pred HCCCEEEE
Confidence 99986653
No 371
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.79 E-value=92 Score=27.85 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=40.5
Q ss_pred ccHHHhhhcc---CCceEEEeecCCCCCCccHHHHHHHHHhcCC-cEEEEcCCCC-HHHHhhcC
Q 038595 443 VTLERLNEGL---TPRHCALSLVGEPIMYPEINTLVDELHRRRI-STFLVTNAQF-PDKIKLLK 501 (534)
Q Consensus 443 ~~~~~~~ea~---~~~h~alSl~GEPlLyp~L~elI~~lk~~gi-~~~LvTNGtl-pe~l~~L~ 501 (534)
|++|.+.++. .|+++.||..= +..-+.+.++++.+++.|. .+.+.--|.. ++..+++.
T Consensus 37 vp~e~~~~~a~~~~~d~V~iS~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~ 99 (122)
T cd02071 37 QTPEEIVEAAIQEDVDVIGLSSLS-GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLK 99 (122)
T ss_pred CCHHHHHHHHHHcCCCEEEEcccc-hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH
Confidence 6677775554 89999999984 3344578999999999976 5556666655 44455444
No 372
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.44 E-value=1.1e+02 Score=28.32 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=42.6
Q ss_pred ccHHHhhhcc---CCceEEEeec-CCCCCCccHHHHHHHHHhcCC-cEEEEcCCCC------H-HHHhhcCC--CceEEE
Q 038595 443 VTLERLNEGL---TPRHCALSLV-GEPIMYPEINTLVDELHRRRI-STFLVTNAQF------P-DKIKLLKP--VTQLYV 508 (534)
Q Consensus 443 ~~~~~~~ea~---~~~h~alSl~-GEPlLyp~L~elI~~lk~~gi-~~~LvTNGtl------p-e~l~~L~~--v~qlyv 508 (534)
+++|++.++. .|+.++||.. + ...+.+.++++.+++.+. .+.++--|.. | +..++|.. ++.+|-
T Consensus 41 vp~e~i~~~a~~~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILVSSLYG--HGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCccc--cCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 7778876664 7999999976 5 455688999999998865 3444444543 3 33344443 566654
No 373
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=28.34 E-value=1.8e+02 Score=29.12 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhCCCceEEECCCCCCc-----------cCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc
Q 038595 83 TLAKRLHALLTSNDLLFDLVDPQTYEP-----------EDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG 151 (534)
Q Consensus 83 ~lAe~La~~L~~~Gl~v~V~dL~d~d~-----------~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~ 151 (534)
.-+..+++.|++.|..+..+.+=++.+ .++.+++.+|| +|-. ..+.|+++|.....|
T Consensus 13 ~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iif-TS~n-------aV~~~~~~l~~~~~~---- 80 (255)
T PRK05752 13 EECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIV-VSKP-------AARLGLELLDRYWPQ---- 80 (255)
T ss_pred HHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEE-ECHH-------HHHHHHHHHHhhCCC----
Confidence 345677777778898876654433321 22445565554 4422 367788888764322
Q ss_pred ccCCCCCeEEEEE
Q 038595 152 SLLLSNCKFAVFG 164 (534)
Q Consensus 152 ~~~Lkgl~yAVFG 164 (534)
+.+++++++|
T Consensus 81 ---~~~~~~~aVG 90 (255)
T PRK05752 81 ---PPQQPWFSVG 90 (255)
T ss_pred ---CcCCEEEEEC
Confidence 2345665555
No 374
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=28.17 E-value=1.8e+02 Score=28.90 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=29.8
Q ss_pred EEEEEECc-cchHHHHHHHHHHHHhhCCCceEEECCCC
Q 038595 70 GKLFFISQ-TGTSKTLAKRLHALLTSNDLLFDLVDPQT 106 (534)
Q Consensus 70 VlI~YgSq-TGtTE~lAe~La~~L~~~Gl~v~V~dL~d 106 (534)
|+++..+. .|-+++.+..|++.|.+.|+++.++....
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 56665554 48899999999999999999999887543
No 375
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=27.90 E-value=1.6e+02 Score=34.16 Aligned_cols=39 Identities=10% Similarity=0.091 Sum_probs=32.5
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceE--EECCCCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFD--LVDPQTY 107 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~--V~dL~d~ 107 (534)
++++..||--||+-.++..+.+.|+++|++++ -.+++++
T Consensus 508 KILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev 548 (602)
T PRK09548 508 RILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDY 548 (602)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhC
Confidence 58899999999999999999999999999644 4444444
No 376
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=27.89 E-value=3.8e+02 Score=26.72 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCC-CCCccC------c-CC-CC--eEEEEeccCCCCCCchHHHHHHHHHHhhcCccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQ-TYEPED------L-SK-EA--LVLIVASSWEDGKPPEAAKFFMNWIDESANDFR 149 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~-d~d~~d------L-~~-~~--lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFR 149 (534)
...+|++|.+.+.+ |+++...+-. ..|..- + .. .+ ++-+.+.+.. ..++....|-+.|.+...
T Consensus 82 d~ela~~l~~~~~~-~~~~~~~~~~~~~DHg~~vpl~~l~~~~~~~piVpi~i~~~~--~~~~~~~~lG~aL~~~~~--- 155 (260)
T cd07320 82 DPDLAWEIAEELIK-EIPVTIVNEMDGLDHGTLVPLSYIFGDPWDFKVIPLSVGVLV--PPFAKLFEFGKAIRAAVE--- 155 (260)
T ss_pred CHHHHHHHHHHHHh-cCCEEEEcccccCCeeecccHHHHhCCCCCCcEEEEEeeccC--CCHHHHHHHHHHHHHHHH---
Confidence 45688888888887 8876644422 222111 1 11 22 2222222211 134556667777765421
Q ss_pred ccccCCCCCeEEEEEecCcch
Q 038595 150 VGSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 150 v~~~~Lkgl~yAVFGLGDs~Y 170 (534)
. .+.+++|+|+||-+.
T Consensus 156 ----~-~~~~vliI~SGdlsH 171 (260)
T cd07320 156 ----P-SDLRVHVVASGDLSH 171 (260)
T ss_pred ----h-cCCcEEEEEeCcccc
Confidence 1 246899999999763
No 377
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=27.69 E-value=39 Score=29.36 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=19.8
Q ss_pred HHHHHhhhcCceEEecccceeeehhh
Q 038595 301 VIRASLEKQGYKIIGSHSGVKICRWT 326 (534)
Q Consensus 301 ~~~~~l~~~gy~~~~~h~~vk~c~w~ 326 (534)
.....|++.||++|+--..=..|-||
T Consensus 54 ~VLnKLE~~G~kVvsmtgvgqt~vWt 79 (83)
T PF06399_consen 54 VVLNKLEKMGYKVVSMTGVGQTLVWT 79 (83)
T ss_dssp HHHHHHHHTTEEEEEEEEETTEEEEE
T ss_pred HHHHHHHhcCeEEEEEeccCceEEEE
Confidence 45788999999999754433578887
No 378
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=27.68 E-value=1.4e+02 Score=29.54 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=48.6
Q ss_pred HHHhhhcc---CCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC-HHHHhhcCC-Cce-EEEEeeCC-----
Q 038595 445 LERLNEGL---TPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF-PDKIKLLKP-VTQ-LYVSVDAA----- 513 (534)
Q Consensus 445 ~~~~~ea~---~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl-pe~l~~L~~-v~q-lyvSlDA~----- 513 (534)
++++-+.+ .++.+++...-. +++.++++++|+.|+++-|.=|-.. .+.++.+++ +|. +.+|++-.
T Consensus 69 P~~~i~~~~~~g~~~i~~H~E~~----~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~ 144 (201)
T PF00834_consen 69 PERYIEEFAEAGADYITFHAEAT----EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK 144 (201)
T ss_dssp GGGHHHHHHHHT-SEEEEEGGGT----TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred HHHHHHHHHhcCCCEEEEcccch----hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence 45544443 577887777732 4677999999999999888877544 577888877 777 56676642
Q ss_pred -CHHHHHhhc
Q 038595 514 -TKDSLKAID 522 (534)
Q Consensus 514 -~~e~y~~I~ 522 (534)
.+++++||+
T Consensus 145 f~~~~~~KI~ 154 (201)
T PF00834_consen 145 FIPEVLEKIR 154 (201)
T ss_dssp -HGGHHHHHH
T ss_pred ccHHHHHHHH
Confidence 345556554
No 379
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=27.63 E-value=2e+02 Score=22.92 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=33.7
Q ss_pred HHHHHHHhhCCCceEEECCCCCCccCcC-CCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595 86 KRLHALLTSNDLLFDLVDPQTYEPEDLS-KEALVLIVASSWEDGKPPEAAKFFMNWIDE 143 (534)
Q Consensus 86 e~La~~L~~~Gl~v~V~dL~d~d~~dL~-~~~lvIfv~STYg~G~pPdna~~Fle~L~e 143 (534)
..+.+.|++.|..++..+-. + +.+. ....+|++.|.....+ |..++.+.+|++.
T Consensus 8 ~a~~~~L~~~g~~v~~~~~~-~--~~l~~~~~tll~i~~~~~~~~-~~~~~~l~~~v~~ 62 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWRKP-Y--EALEADDGTLLVIGPDLRLSE-PEEAEALLEWVEA 62 (70)
T ss_pred HHHHHHHHHCCCeeEEeccc-H--HHhCCCCCEEEEEeCCCCCCc-hHHHHHHHHHHHc
Confidence 34556666778888765542 2 2343 3456777777755333 5678888888863
No 380
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=27.57 E-value=89 Score=33.29 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=52.9
Q ss_pred CCCcceeeeeccccccccccccccCCCCCCCCcccccccHHHhhhccCCceEEEee--cCCCCCCc-cHHHHHHHHHhcC
Q 038595 406 PGEYSIFVLLDFFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTPRHCALSL--VGEPIMYP-EINTLVDELHRRR 482 (534)
Q Consensus 406 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~h~alSl--~GEPlLyp-~L~elI~~lk~~g 482 (534)
|| ++||..+..|-|++. .++...+. .+-+.....+++.++++++++.-+|-+ -.-|++.. +|.++++.+|+.|
T Consensus 91 ~G--D~VI~~~~~yg~~~~-~~~~~~~~-~~~~~~~~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~g 166 (364)
T PRK07269 91 VG--SKVVAVRDLYGGSFR-WFNQQEKE-GRFHFTYANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKG 166 (364)
T ss_pred CC--CEEEEecCCcCchHH-HHHHHHhc-CcEEEEecCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcC
Confidence 66 678888877766653 22322221 122223345688999998765444443 49999875 9999999999999
Q ss_pred CcEEEEc
Q 038595 483 ISTFLVT 489 (534)
Q Consensus 483 i~~~LvT 489 (534)
+.+.+..
T Consensus 167 i~vvvD~ 173 (364)
T PRK07269 167 AKVIVDN 173 (364)
T ss_pred CEEEEEC
Confidence 8766554
No 381
>PRK13937 phosphoheptose isomerase; Provisional
Probab=27.50 E-value=78 Score=30.48 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=27.6
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
+.||.+|+ .+++.+.++.+|++|+++..+|+..
T Consensus 111 i~iS~sG~---t~~~~~~~~~ak~~g~~~I~iT~~~ 143 (188)
T PRK13937 111 IGISTSGN---SPNVLAALEKARELGMKTIGLTGRD 143 (188)
T ss_pred EEEeCCCC---cHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45666687 5899999999999999999999853
No 382
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=27.49 E-value=1.2e+02 Score=33.50 Aligned_cols=73 Identities=22% Similarity=0.262 Sum_probs=50.1
Q ss_pred EeccCCCCCCchHHHHHHHHHHhhcCccc--------------------ccccCCCCCeEEEEEecCcchHHHH-HHHHH
Q 038595 121 VASSWEDGKPPEAAKFFMNWIDESANDFR--------------------VGSLLLSNCKFAVFGVGSKSYEKTF-NMVAK 179 (534)
Q Consensus 121 v~STYg~G~pPdna~~Fle~L~e~~~DFR--------------------v~~~~Lkgl~yAVFGLGDs~Y~e~F-c~aAK 179 (534)
-..-||...+|.+...|+...++...+.. .....|+|+++||+||-=+.-.|.+ ...+.
T Consensus 254 aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~~~l~Gk~iavlgLafKpnTDD~ReSpa~ 333 (414)
T COG1004 254 AGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKPNTDDMRESPAL 333 (414)
T ss_pred CCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeecCCCccchhchHH
Confidence 34557777999999999877766553321 1122399999999999433222444 45688
Q ss_pred HHHHHHHHcCCcee
Q 038595 180 DLSKKMRELGAGEV 193 (534)
Q Consensus 180 ~LDk~L~kLGA~rV 193 (534)
.+-+.|...||+..
T Consensus 334 ~vi~~L~~~Ga~V~ 347 (414)
T COG1004 334 DIIKRLQEKGAEVI 347 (414)
T ss_pred HHHHHHHHCCCEEE
Confidence 89999999999643
No 383
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=27.32 E-value=91 Score=32.59 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=38.5
Q ss_pred cEEEEEECccchHH-HHHHHHHHHHhhCCCceEEECCCCCCccCcCCC---CeEEEE
Q 038595 69 KGKLFFISQTGTSK-TLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKE---ALVLIV 121 (534)
Q Consensus 69 kVlI~YgSqTGtTE-~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~---~lvIfv 121 (534)
.+.|+.+|.+|... .++++|.+.|+++|..+-++-+.+++++.|.+. +.+|++
T Consensus 211 ~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~eid~fV~~ 267 (307)
T PF01866_consen 211 TFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFPEIDAFVQI 267 (307)
T ss_dssp EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS---SEEEE-
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCcccCEEEEe
Confidence 49999999988765 688999999999999999999999998887654 444444
No 384
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=27.27 E-value=62 Score=34.36 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=28.1
Q ss_pred CccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhc
Q 038595 468 YPEINTLVDELHRRRISTFLVTNAQFPDKIKLL 500 (534)
Q Consensus 468 yp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L 500 (534)
.|.+.++++.|+++|++..|+|||..+...+.|
T Consensus 148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L 180 (301)
T TIGR01684 148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESM 180 (301)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 589999999999999999999999886554433
No 385
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=27.16 E-value=1.7e+02 Score=25.74 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=34.5
Q ss_pred ceEEEeec-CCCCCCccHHHHHHHHHhcCCcEEEEcCCC-CHHHHhhcCC
Q 038595 455 RHCALSLV-GEPIMYPEINTLVDELHRRRISTFLVTNAQ-FPDKIKLLKP 502 (534)
Q Consensus 455 ~h~alSl~-GEPlLyp~L~elI~~lk~~gi~~~LvTNGt-lpe~l~~L~~ 502 (534)
+.+.|-++ |+|...+.+.++++.+++.|+.++.+.=|. ..+.++.|..
T Consensus 104 ~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 104 PKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 34555555 888887778888999998888888776665 4666666653
No 386
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=27.09 E-value=3.9e+02 Score=25.72 Aligned_cols=56 Identities=16% Similarity=0.057 Sum_probs=37.9
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEeccCC
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVASSWE 126 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~STYg 126 (534)
|+++..+ .|..+.....+++.|.+.|+++.++.........+....+-+...+...
T Consensus 2 Il~i~~~-~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (359)
T cd03808 2 ILHIVTV-DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDR 57 (359)
T ss_pred eeEEEec-chhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEeccccc
Confidence 5566555 6778888899999999899999999876554322333344444445443
No 387
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=27.00 E-value=1.3e+02 Score=26.25 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=35.6
Q ss_pred ccHHHhhhc---cCCceEEEeec-CCCCCCccHHHHHHHHHhcCC-cEEEEcCCCC
Q 038595 443 VTLERLNEG---LTPRHCALSLV-GEPIMYPEINTLVDELHRRRI-STFLVTNAQF 493 (534)
Q Consensus 443 ~~~~~~~ea---~~~~h~alSl~-GEPlLyp~L~elI~~lk~~gi-~~~LvTNGtl 493 (534)
++++.+.++ .+|+.+.||.+ +.+. +.+.++++.+++.+- .+.++--|..
T Consensus 37 ~~~~~l~~~~~~~~pdvV~iS~~~~~~~--~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 37 VPPEEIVEAAKEEDADAIGLSGLLTTHM--TLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccccH--HHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 666666554 38999999999 5544 788999999999865 5555555554
No 388
>PLN02928 oxidoreductase family protein
Probab=26.70 E-value=1.8e+02 Score=31.02 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=25.8
Q ss_pred cCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCcee
Q 038595 153 LLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEV 193 (534)
Q Consensus 153 ~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV 193 (534)
..|.|++++|+|+| ..++.+.+.|..+|.+.+
T Consensus 155 ~~l~gktvGIiG~G---------~IG~~vA~~l~afG~~V~ 186 (347)
T PLN02928 155 DTLFGKTVFILGYG---------AIGIELAKRLRPFGVKLL 186 (347)
T ss_pred cCCCCCEEEEECCC---------HHHHHHHHHHhhCCCEEE
Confidence 35899999999987 457788888899998554
No 389
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=26.65 E-value=3.4e+02 Score=28.44 Aligned_cols=83 Identities=10% Similarity=0.135 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CC-C----CeEEEEeccCCCCC-CchHHHHHHHHHHhhcCcc
Q 038595 82 KTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SK-E----ALVLIVASSWEDGK-PPEAAKFFMNWIDESANDF 148 (534)
Q Consensus 82 E~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~-~----~lvIfv~STYg~G~-pPdna~~Fle~L~e~~~DF 148 (534)
..+|+.|.+.+.+.|+++...+=-.+|..- + ++ . .++-+.+.++.... .|.....|=+.|.+...+
T Consensus 98 ~eLA~~i~~~l~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~~ipvVpisvn~~~~p~~~~~r~~~lG~al~~~i~~- 176 (284)
T PRK13366 98 PDLAAHIAQSVIQDDFDLTIVNKMDVDHGLTVPLSLMCGQPDAWPCPVIPFAVNVVQYPVPSGRRCFALGQAIRRAVES- 176 (284)
T ss_pred HHHHHHHHHHHHHCCCCEeecCCCCCCccHHHHHHHhCccccCCCCceEEEeeccCCCCCCCHHHHHHHHHHHHHHHHh-
Confidence 669999999999999987765522232111 1 11 1 23323233333232 333344555566655311
Q ss_pred cccccCCCCCeEEEEEecCcch
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y 170 (534)
.-+..+++|+|+|+.+.
T Consensus 177 -----~~~d~rV~iIaSGgLSH 193 (284)
T PRK13366 177 -----YDEDLNVQIWGTGGMSH 193 (284)
T ss_pred -----cCcCCCEEEEecCcccc
Confidence 12457899999999875
No 390
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=26.59 E-value=1e+02 Score=32.46 Aligned_cols=60 Identities=17% Similarity=0.204 Sum_probs=44.8
Q ss_pred ccHHHhhhccCCceEEEeec----CCCCCCccHHHHHHHHHhcCCc-EEEEcCCCCHHHHhhcCC
Q 038595 443 VTLERLNEGLTPRHCALSLV----GEPIMYPEINTLVDELHRRRIS-TFLVTNAQFPDKIKLLKP 502 (534)
Q Consensus 443 ~~~~~~~ea~~~~h~alSl~----GEPlLyp~L~elI~~lk~~gi~-~~LvTNGtlpe~l~~L~~ 502 (534)
-|.+.+.+.+..+.+.++.- ++|-|-|.+.+.++.+++.|++ +.+++=|..-|.++-|.+
T Consensus 211 ~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G~~~V~v~p~gFv~D~lETl~e 275 (316)
T PF00762_consen 211 ETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEGVKRVVVVPPGFVSDCLETLYE 275 (316)
T ss_dssp HHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT-SEEEEEETT-SSSSHHHHCC
T ss_pred HHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcCCCeEEEECCccccccHhHHHH
Confidence 46678888888777777763 6899999999999999999976 888888887555554444
No 391
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=26.48 E-value=1e+02 Score=33.82 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=42.9
Q ss_pred cccccHHHhhhccCCceEEEeec---CCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 440 EGGVTLERLNEGLTPRHCALSLV---GEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 440 ~~~~~~~~~~ea~~~~h~alSl~---GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
.|-|++|.|+++++++.+-+|.+ .|==.--.|.|+.+.+|++| +.+.|.+.
T Consensus 126 ~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~--i~fHvDAv 179 (386)
T COG1104 126 NGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERG--ILFHVDAV 179 (386)
T ss_pred CCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcC--CeEEEehh
Confidence 67799999999999999999987 77766667899999999999 55566554
No 392
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.21 E-value=86 Score=30.48 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=28.3
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
++||.+|+ .+.+.+.++.+|++|+++..+|+-.
T Consensus 116 I~iS~SG~---t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 116 LGISTSGN---SGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56677797 7899999999999999999998864
No 393
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=26.21 E-value=1.7e+02 Score=29.75 Aligned_cols=77 Identities=19% Similarity=0.188 Sum_probs=53.7
Q ss_pred cHHHhhhcc---CCceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCC-CCHHHHhhcCC-Cce-EEEEeeCC----
Q 038595 444 TLERLNEGL---TPRHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNA-QFPDKIKLLKP-VTQ-LYVSVDAA---- 513 (534)
Q Consensus 444 ~~~~~~ea~---~~~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNG-tlpe~l~~L~~-v~q-lyvSlDA~---- 513 (534)
+++++-+.+ .++.+++....-+ .++.++|+.+|+.|++.-|.=|- |-.+.++.+++ +|. +-+|++-.
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~---~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ 146 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETIN---GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQ 146 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCc---chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcch
Confidence 466665554 6788888776432 35778999999999999988885 55677887776 676 46666643
Q ss_pred --CHHHHHhhcC
Q 038595 514 --TKDSLKAIDR 523 (534)
Q Consensus 514 --~~e~y~~I~r 523 (534)
.+++++||.+
T Consensus 147 ~fi~~~l~KI~~ 158 (229)
T PRK09722 147 PFIPEMLDKIAE 158 (229)
T ss_pred hccHHHHHHHHH
Confidence 4456666653
No 394
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=25.90 E-value=1.3e+02 Score=28.51 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=37.0
Q ss_pred hhccCCceEEEeecCCCCCCccHHHHHHHHHh--cCCcEEEEcCCCCHHH
Q 038595 449 NEGLTPRHCALSLVGEPIMYPEINTLVDELHR--RRISTFLVTNAQFPDK 496 (534)
Q Consensus 449 ~ea~~~~h~alSl~GEPlLyp~L~elI~~lk~--~gi~~~LvTNGtlpe~ 496 (534)
+++..-+.+++-..|.|++|--...+++.+++ .|+.+.++-+-+-...
T Consensus 71 ~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~ 120 (210)
T PF00590_consen 71 EAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQA 120 (210)
T ss_dssp HHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHH
T ss_pred HHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHH
Confidence 34445566787779999999999999999998 8999999888775443
No 395
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.86 E-value=3.1e+02 Score=25.28 Aligned_cols=105 Identities=12% Similarity=0.187 Sum_probs=0.0
Q ss_pred cEEEEEECccchHHHHHHHHHHHH-hhCCCceEEECCCCCCccCc----CCCCeEEEEeccCCCCCCchHHHHHHHHHHh
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALL-TSNDLLFDLVDPQTYEPEDL----SKEALVLIVASSWEDGKPPEAAKFFMNWIDE 143 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L-~~~Gl~v~V~dL~d~d~~dL----~~~~lvIfv~STYg~G~pPdna~~Fle~L~e 143 (534)
++.|+-++..|........|...+ +..|++|.-.... ..++++ .+++.=++++|+.. +...+.+...++.|++
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iSsl~-~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVSSLA-GGHLTLVPALRKELDK 79 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcCch-hhhHHHHHHHHHHHHh
Q ss_pred hcCcccccccCCCCCeEEEEE--ecCcchHHHHHHHHHHHHHHHHHcCCceecceE
Q 038595 144 SANDFRVGSLLLSNCKFAVFG--VGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVV 197 (534)
Q Consensus 144 ~~~DFRv~~~~Lkgl~yAVFG--LGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg 197 (534)
. .+....+-| | ..+..+. .|.++|..+++.++
T Consensus 80 ~---------g~~~i~viv-GG~~~~~~~~------------~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 80 L---------GRPDILVVV-GGVIPPQDFD------------ELKEMGVAEIFGPG 113 (132)
T ss_pred c---------CCCCCEEEE-eCCCChHhHH------------HHHHCCCCEEECCC
No 396
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=25.83 E-value=1.5e+02 Score=32.31 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHHhhcCcccccccCCCC-CeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecce
Q 038595 128 GKPPEAAKFFMNWIDESANDFRVGSLLLSN-CKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPV 196 (534)
Q Consensus 128 G~pPdna~~Fle~L~e~~~DFRv~~~~Lkg-l~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~pl 196 (534)
..|-+++...+.||.+. -| +++..+|. |.-|+ -..-|.+.+.+++.|++.+.+.
T Consensus 115 a~PNQ~~~pl~~~~~~~-----------~G~~r~~lvGS-dYv~p---re~Nri~r~~l~~~GgevvgE~ 169 (363)
T PF13433_consen 115 AAPNQQLLPLIDYLLEN-----------FGAKRFYLVGS-DYVYP---RESNRIIRDLLEARGGEVVGER 169 (363)
T ss_dssp --GGGTHHHHHHHHHHH-----------S--SEEEEEEE-SSHHH---HHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCchhhHHHHHHHHHhc-----------cCCceEEEecC-Cccch---HHHHHHHHHHHHHcCCEEEEEE
Confidence 35666788999999765 36 89999997 55666 4556667777888999777653
No 397
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=25.81 E-value=2.8e+02 Score=26.60 Aligned_cols=39 Identities=13% Similarity=0.084 Sum_probs=31.8
Q ss_pred EEEEEECcc--chHHHHHHHHHHHHhhCCCceEEECCCCCC
Q 038595 70 GKLFFISQT--GTSKTLAKRLHALLTSNDLLFDLVDPQTYE 108 (534)
Q Consensus 70 VlI~YgSqT--GtTE~lAe~La~~L~~~Gl~v~V~dL~d~d 108 (534)
|+|+..+.. |-+++.+..+++.|.+.|++|.++....-+
T Consensus 2 I~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 2 ILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred eEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 566655555 889999999999999999999999876654
No 398
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=25.62 E-value=2.1e+02 Score=28.25 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=37.1
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCCC
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAAT 514 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~~ 514 (534)
++||.+|+ .+.+.+.++.+|++|+++..+|+...-. +.++.....+.|-|.+.+
T Consensus 114 i~iS~SG~---s~~v~~a~~~Ak~~G~~vI~IT~~~~s~-l~~l~~~~D~~i~ip~~~ 167 (196)
T PRK10886 114 LAISTRGN---SRDIVKAVEAAVTRDMTIVALTGYDGGE-LAGLLGPQDVEIRIPSHR 167 (196)
T ss_pred EEEeCCCC---CHHHHHHHHHHHHCCCEEEEEeCCCCCh-hhhccccCCEEEEcCCCc
Confidence 66788898 6889999999999999999999865422 334321123455555444
No 399
>PRK13936 phosphoheptose isomerase; Provisional
Probab=25.06 E-value=91 Score=30.36 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=27.4
Q ss_pred EEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 457 CALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 457 ~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
++||.+|+ .+.+.++++.+|++|.++..+|+..
T Consensus 116 i~iS~sG~---t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 116 LAISTSGN---SANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred EEEeCCCC---cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45566687 7889999999999999999988843
No 400
>PRK10628 LigB family dioxygenase; Provisional
Probab=24.96 E-value=4.8e+02 Score=26.90 Aligned_cols=75 Identities=17% Similarity=0.168 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCC--CCCccC-------cCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCccccc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQ--TYEPED-------LSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVG 151 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~--d~d~~d-------L~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~ 151 (534)
+-.+|++|.+.|.+.|+. .+-. -+|-.- +++.++=|+-+|.-. +..|+.--..=+.|.
T Consensus 69 ~p~LA~~i~~ll~~~~~~---~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~-~~~~~~h~~lG~aL~--------- 135 (246)
T PRK10628 69 SPALAQRLVELLAPVPVT---LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDS-TKPAAWHFEMGRKLA--------- 135 (246)
T ss_pred CHHHHHHHHHHhhhcCcc---cCCcccCcccchhhhhhhhCCCCCCCeEEeecCC-CCCHHHHHHHHHHHH---------
Confidence 457899999999876651 1111 122111 245565455555433 333443233334443
Q ss_pred ccCCCCCeEEEEEecCcch
Q 038595 152 SLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 152 ~~~Lkgl~yAVFGLGDs~Y 170 (534)
+|+...+.|+|+|+...
T Consensus 136 --~LR~~gvLIigSG~~~H 152 (246)
T PRK10628 136 --ALRDEGIMLVASGNVVH 152 (246)
T ss_pred --hhccCCEEEEecCcccc
Confidence 56777899999998765
No 401
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=24.92 E-value=1.4e+02 Score=31.56 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=48.1
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCc-------CCCCeEEEEeccCCCCCCchHHHHHHHHHH
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDL-------SKEALVLIVASSWEDGKPPEAAKFFMNWID 142 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL-------~~~~lvIfv~STYg~G~pPdna~~Fle~L~ 142 (534)
++|-|||+.+.+...|+.|. +.|+.+.++|+..+.|-|. .+.+.+|++=-.+-.|.+-. .+.++|.
T Consensus 205 ~iva~G~~~~~a~eAa~~L~----~~Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~---~la~~l~ 277 (327)
T PRK09212 205 TIVTFSIQVKLALEAAELLE----KEGISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGA---EIAALIM 277 (327)
T ss_pred EEEEccHHHHHHHHHHHHHH----hcCCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHH---HHHHHHH
Confidence 56779999888888887764 4699999999998876442 24566777766665565543 5666676
Q ss_pred hh
Q 038595 143 ES 144 (534)
Q Consensus 143 e~ 144 (534)
+.
T Consensus 278 ~~ 279 (327)
T PRK09212 278 KE 279 (327)
T ss_pred Hh
Confidence 54
No 402
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only]
Probab=24.75 E-value=2.3e+02 Score=30.61 Aligned_cols=52 Identities=21% Similarity=0.461 Sum_probs=34.6
Q ss_pred Ceeeeec---ccccccccccccccCCCCCCCCcccccCCChHHHHHHHHHHHHH-Hhhcc
Q 038595 347 HRCMEAT---PSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNTAIDLHAK-MIKQM 402 (534)
Q Consensus 347 ~~c~~~~---p~~~C~~~C~~C~r~~~~~~~~~~~~~~~~p~~i~~~~~~~~~~-~i~~~ 402 (534)
-||+-+- -++.|-+.|.||--...|.+. ..--.|+||+.--++.+++ .|.++
T Consensus 50 GrCIsLlKiLlTN~CiyDC~YCINr~s~~~p----ra~ftp~Eiv~ltlnfYrRnYIeGL 105 (404)
T COG4277 50 GRCISLLKILLTNFCIYDCAYCINRSSNDTP----RARFTPEEIVDLTLNFYRRNYIEGL 105 (404)
T ss_pred CccHHHHHHHHhhhHHHhhHHHhccccCCCc----ccccCHHHHHHHHHHHHHHhhhhhh
Confidence 3665433 356799999999876555442 1235799999988887654 34443
No 403
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=24.74 E-value=77 Score=38.91 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=40.1
Q ss_pred CCCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhcC---C-CceEEEEee----CCCHHHHHhhcC
Q 038595 465 PIMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLLK---P-VTQLYVSVD----AATKDSLKAIDR 523 (534)
Q Consensus 465 PlLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L~---~-v~qlyvSlD----A~~~e~y~~I~r 523 (534)
..+||.+.++++.|+++|+++.++||+.... .++.+- . .+.+..+=| -|+++.|..+.+
T Consensus 160 ~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~ 229 (1057)
T PLN02919 160 GIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAK 229 (1057)
T ss_pred CccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHH
Confidence 3579999999999999999999999998643 333321 1 333333322 356777776654
No 404
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=24.63 E-value=93 Score=33.48 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=24.4
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
=..+|.|.|+++|++|.++++.+|..+
T Consensus 47 s~~~l~e~i~~ah~~gkk~~V~~N~~~ 73 (347)
T COG0826 47 SVEDLAEAVELAHSAGKKVYVAVNTLL 73 (347)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 356899999999999999999999986
No 405
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=24.53 E-value=37 Score=30.16 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=27.7
Q ss_pred EEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCcc
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPE 110 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~ 110 (534)
++|-|||+...+.+.|+.|.+ .|+.+.++|+.-+.|-
T Consensus 13 ~iia~G~~~~~al~A~~~L~~----~Gi~~~vi~~~~i~P~ 49 (124)
T PF02780_consen 13 TIIAYGSMVEEALEAAEELEE----EGIKAGVIDLRTIKPF 49 (124)
T ss_dssp EEEEETTHHHHHHHHHHHHHH----TTCEEEEEEEEEEESS
T ss_pred EEEeehHHHHHHHHHHHHHHH----cCCceeEEeeEEEecc
Confidence 567788888777776666655 5999999998876553
No 406
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=24.48 E-value=1.4e+02 Score=31.74 Aligned_cols=34 Identities=15% Similarity=0.403 Sum_probs=27.9
Q ss_pred ccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 152 SLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 152 ~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
...|.|+.++|+|+| ..++.+.++++.+|.+.++
T Consensus 137 g~el~gkTvGIiG~G---------~IG~~va~~l~afgm~v~~ 170 (324)
T COG0111 137 GTELAGKTVGIIGLG---------RIGRAVAKRLKAFGMKVIG 170 (324)
T ss_pred cccccCCEEEEECCC---------HHHHHHHHHHHhCCCeEEE
Confidence 346889999999986 4578899999999987653
No 407
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=24.42 E-value=1.2e+02 Score=32.95 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=42.9
Q ss_pred CCccCcCCCCeEEEEeccCCCCCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHH
Q 038595 107 YEPEDLSKEALVLIVASSWEDGKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMR 186 (534)
Q Consensus 107 ~d~~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~ 186 (534)
+|.+.+.+..+.+.-+|.++... -++.-+..|-... |-....|+|++++|+|+| ..++.+.++|.
T Consensus 72 iD~~~~~~~gI~v~napg~na~a---VAE~v~~~lL~l~---r~~g~~l~gktvGIIG~G---------~IG~~va~~l~ 136 (381)
T PRK00257 72 LDLDYFAEAGITWSSAPGCNARG---VVDYVLGSLLTLA---EREGVDLAERTYGVVGAG---------HVGGRLVRVLR 136 (381)
T ss_pred cCHHHHHHCCCEEEECCCcChHH---HHHHHHHHHHHHh---cccCCCcCcCEEEEECCC---------HHHHHHHHHHH
Confidence 33333445566665566554322 2334333333322 112357899999999997 34777888888
Q ss_pred HcCCcee
Q 038595 187 ELGAGEV 193 (534)
Q Consensus 187 kLGA~rV 193 (534)
.+|.+.+
T Consensus 137 a~G~~V~ 143 (381)
T PRK00257 137 GLGWKVL 143 (381)
T ss_pred HCCCEEE
Confidence 9998654
No 408
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=24.34 E-value=75 Score=31.22 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=25.1
Q ss_pred CCCccHHHHHH-HHHhcCCcEEEEcCCCC
Q 038595 466 IMYPEINTLVD-ELHRRRISTFLVTNAQF 493 (534)
Q Consensus 466 lLyp~L~elI~-~lk~~gi~~~LvTNGtl 493 (534)
.+||...++|+ .+++.|+.+.++||...
T Consensus 94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~ 122 (210)
T TIGR01545 94 TAFPLVAERLRQYLESSDADIWLITGSPQ 122 (210)
T ss_pred CCCccHHHHHHHHHHhCCCEEEEEcCCcH
Confidence 57999999996 78889999999999975
No 409
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=24.23 E-value=2.8e+02 Score=26.02 Aligned_cols=97 Identities=11% Similarity=0.155 Sum_probs=46.4
Q ss_pred eEEEEeccCCCCCCchHHHHHHHHHHhhcCc-----ccccccCCCC-CeEEEEEecCcchHHHHHHHHHHHHHHHHH---
Q 038595 117 LVLIVASSWEDGKPPEAAKFFMNWIDESAND-----FRVGSLLLSN-CKFAVFGVGSKSYEKTFNMVAKDLSKKMRE--- 187 (534)
Q Consensus 117 lvIfv~STYg~G~pPdna~~Fle~L~e~~~D-----FRv~~~~Lkg-l~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~k--- 187 (534)
++|+-.|++| |.+...+.+.+.... +.+....... ..|-++.+|.+.|+ ++.....+..++..
T Consensus 2 i~IiY~S~tG------nTe~vA~~Ia~~l~~~~~~i~~~~~~~~~~l~~~d~ii~gspty~--~g~~p~~~~~fl~~l~~ 73 (167)
T TIGR01752 2 IGIFYGTDTG------NTEGIAEKIQKELGEDDVDVFNIAKASKEDLNAYDKLILGTPTWG--VGELQEDWEDFLPTLEE 73 (167)
T ss_pred EEEEEECCCC------hHHHHHHHHHHHhCCCceEEEEcccCCHhHHhhCCEEEEEecCCC--CCcCcHHHHHHHHHhhc
Confidence 4555566666 455666665544321 1111111111 24555666656662 12223344444433
Q ss_pred --cCCceecceEEeeCCCCCcHHHHHHHHHHHHHHHHh
Q 038595 188 --LGAGEVLPVVEGDVDGGELDVVFEDWSKRVVAILKS 223 (534)
Q Consensus 188 --LGA~rV~plg~gD~~~g~~e~~f~eW~~~L~~~L~~ 223 (534)
+.+++++-.+.+|... .-..|......+.+.|..
T Consensus 74 ~~l~gk~v~~fg~g~~~~--y~~~f~~a~~~l~~~l~~ 109 (167)
T TIGR01752 74 LDFTGKTVALFGLGDQEG--YSETFCDGMGILYDKIKA 109 (167)
T ss_pred CCCCCCEEEEEecCCCCc--ccHHHHHHHHHHHHHHHH
Confidence 5667888777776431 112344445555555543
No 410
>PRK11590 hypothetical protein; Provisional
Probab=24.05 E-value=80 Score=30.62 Aligned_cols=28 Identities=18% Similarity=0.374 Sum_probs=24.7
Q ss_pred CCccHHHHH-HHHHhcCCcEEEEcCCCCH
Q 038595 467 MYPEINTLV-DELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 467 Lyp~L~elI-~~lk~~gi~~~LvTNGtlp 494 (534)
+||.+.++| +.+++.|+.+.++||...+
T Consensus 96 ~~pga~e~L~~~l~~~G~~l~IvSas~~~ 124 (211)
T PRK11590 96 AFPVVQERLTTYLLSSDADVWLITGSPQP 124 (211)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEeCCcHH
Confidence 499999999 5788899999999999863
No 411
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=23.86 E-value=2e+02 Score=25.33 Aligned_cols=39 Identities=10% Similarity=0.042 Sum_probs=32.4
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCc--eEEECCCCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLL--FDLVDPQTY 107 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~--v~V~dL~d~ 107 (534)
+|+.+.|+--||+-.++..+.+.|+++|++ +.....+++
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~ 43 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEI 43 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccc
Confidence 589999999999999999999999999985 444444444
No 412
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.73 E-value=1.3e+02 Score=23.77 Aligned_cols=34 Identities=12% Similarity=0.303 Sum_probs=28.2
Q ss_pred EEeecCCCCCC-c-cHHHHHHHHHhcCCcEEEEcCCC
Q 038595 458 ALSLVGEPIMY-P-EINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 458 alSl~GEPlLy-p-~L~elI~~lk~~gi~~~LvTNGt 492 (534)
.+|.+|+ ++. + -+.++.+.|.+.|+++.+++.|+
T Consensus 3 ~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5788999 663 5 47789999999999999999887
No 413
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=23.53 E-value=1.1e+02 Score=28.51 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCccHHHHHHHHHhcCCcEEEEcCCCCHH---HHhhc--CC-CceEEEEee--------CCCHHHHHhhc
Q 038595 466 IMYPEINTLVDELHRRRISTFLVTNAQFPD---KIKLL--KP-VTQLYVSVD--------AATKDSLKAID 522 (534)
Q Consensus 466 lLyp~L~elI~~lk~~gi~~~LvTNGtlpe---~l~~L--~~-v~qlyvSlD--------A~~~e~y~~I~ 522 (534)
-++|.+.++++.|+ ..+.++||+.... .++.+ .+ .+.++.+=+ -|+++.|..+.
T Consensus 84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~ 151 (184)
T TIGR01993 84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEKAL 151 (184)
T ss_pred CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHHHH
Confidence 46889999998887 4789999998743 33332 12 455555533 34667776654
No 414
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=23.31 E-value=1.3e+02 Score=31.29 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=28.9
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCc-eEEECCC
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLL-FDLVDPQ 105 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~-v~V~dL~ 105 (534)
+|+|+++|.+|--...|+.|++.|+++|.. +.+.|.-
T Consensus 6 rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~ 43 (380)
T PRK13609 6 KVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLF 43 (380)
T ss_pred eEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhH
Confidence 499999998667788999999999988875 4444443
No 415
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=23.31 E-value=4.4e+02 Score=26.14 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=35.4
Q ss_pred HhhhccCCceEEEee--cCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcC
Q 038595 447 RLNEGLTPRHCALSL--VGEPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLK 501 (534)
Q Consensus 447 ~~~ea~~~~h~alSl--~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~ 501 (534)
-|.+.+..+.+++.. .|++.--.+|.++++.+++.++++.+.....-+..++.|.
T Consensus 162 Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la 218 (256)
T PF01297_consen 162 YFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALA 218 (256)
T ss_dssp HHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHH
T ss_pred HHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHH
Confidence 355566777777662 2444445689999999999999877776666666565554
No 416
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=23.05 E-value=1e+02 Score=32.12 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 468 YPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 468 yp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
+|.=.++|+.|+++|+++.++||.+.
T Consensus 26 ipga~e~l~~L~~~g~~~iflTNn~~ 51 (269)
T COG0647 26 IPGAAEALKRLKAAGKPVIFLTNNST 51 (269)
T ss_pred CchHHHHHHHHHHcCCeEEEEeCCCC
Confidence 57888999999999999999999875
No 417
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=22.72 E-value=2.1e+02 Score=28.45 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHhhhccCC-ceEEEee--cCCCCCC-ccHHHHHHHHHhcCCc----EEEEcCCCC----HHHHhhcCC---Cce-EEEE
Q 038595 446 ERLNEGLTP-RHCALSL--VGEPIMY-PEINTLVDELHRRRIS----TFLVTNAQF----PDKIKLLKP---VTQ-LYVS 509 (534)
Q Consensus 446 ~~~~ea~~~-~h~alSl--~GEPlLy-p~L~elI~~lk~~gi~----~~LvTNGtl----pe~l~~L~~---v~q-lyvS 509 (534)
.+|.+...+ +.++|.. .--|+=+ --|+.++++|++.|++ ++|+..|++ ++.+++++. +.+ -.++
T Consensus 45 ~~L~~~~~~~~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii~A~G~Hr~~t~ee~~~~lG~~i~~~~~v~~ 124 (204)
T PF09861_consen 45 PPLRELVKPGKRVAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITIIIALGTHRPMTEEELKQILGEEIYERVRVVN 124 (204)
T ss_dssp --HHHHCTT-SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEEEE-TTS----HHHHHHHH-HHHHHHSEEEE
T ss_pred ccHHHHhCCCCeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEEEeCCCCCCCCHHHHHHHhhhhhcCceEEEe
Confidence 446665544 8889888 4666443 3688899999999984 778899997 344555554 222 2345
Q ss_pred eeCCCHHHH
Q 038595 510 VDAATKDSL 518 (534)
Q Consensus 510 lDA~~~e~y 518 (534)
=|+-|++..
T Consensus 125 Hd~~d~~~l 133 (204)
T PF09861_consen 125 HDCDDPEDL 133 (204)
T ss_dssp --TT-GGGE
T ss_pred cCCCCcccc
Confidence 555555543
No 418
>PTZ00445 p36-lilke protein; Provisional
Probab=22.65 E-value=88 Score=31.85 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 467 MYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 467 Lyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
+-|++.++++.+++.||++.+||=..
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd 101 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSD 101 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccc
Confidence 78899999999999999999999654
No 419
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=22.63 E-value=2.2e+02 Score=29.02 Aligned_cols=75 Identities=7% Similarity=0.010 Sum_probs=51.6
Q ss_pred cHHHhhhcc---CCceEEEeecCCCCCCccHHHHHHHHHhcCC--cEEEEcCC-CCHHHHhhcCC-Cce-EEEEeeCC--
Q 038595 444 TLERLNEGL---TPRHCALSLVGEPIMYPEINTLVDELHRRRI--STFLVTNA-QFPDKIKLLKP-VTQ-LYVSVDAA-- 513 (534)
Q Consensus 444 ~~~~~~ea~---~~~h~alSl~GEPlLyp~L~elI~~lk~~gi--~~~LvTNG-tlpe~l~~L~~-v~q-lyvSlDA~-- 513 (534)
+++++-+.+ .++.+++...-. +++.++++.+|+.|+ +.-|.=|= |-.+.++.+++ +|+ +-+|++-.
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~----~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfg 154 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQT----HDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTG 154 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc----ccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCC
Confidence 467765544 578777776643 568899999999998 88888885 55677777776 666 45566532
Q ss_pred ----CHHHHHhhc
Q 038595 514 ----TKDSLKAID 522 (534)
Q Consensus 514 ----~~e~y~~I~ 522 (534)
.++++.||.
T Consensus 155 GQ~f~~~~l~KI~ 167 (228)
T PRK08091 155 TKAPSDLILDRVI 167 (228)
T ss_pred CccccHHHHHHHH
Confidence 345555554
No 420
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=22.48 E-value=1.1e+02 Score=32.25 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=52.2
Q ss_pred cccccccccccccCCCCCCCCcccccccHHHhhhccCC-ceEE---EeecC-CCCCCccHHHHHHHHHhcCCc-EEEEcC
Q 038595 417 FFYFGTVSSAIDKQIPSNDGEEKEGGVTLERLNEGLTP-RHCA---LSLVG-EPIMYPEINTLVDELHRRRIS-TFLVTN 490 (534)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~-~h~a---lSl~G-EPlLyp~L~elI~~lk~~gi~-~~LvTN 490 (534)
|-|-|.--+.+++--| -..+-.-+.+++.+.+.+ ..+. .|..| +|.|-|.+.+.++.+++.|++ +.++.=
T Consensus 193 fSaHglP~~~~~~Gd~----Y~~~~~~ta~~l~~~l~~~~~~~~~fQS~~g~~~Wl~P~~~~~l~~l~~~G~k~V~vvP~ 268 (322)
T TIGR00109 193 FSAHGLPQSYVDEGDP----YPAECEATTRLIAEKLGFPNEYRLTWQSRVGPEPWLGPYTEELLEKLGEQGVQHIVVVPI 268 (322)
T ss_pred EeCCCCchhHhhCCCC----hHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcCCCCHHHHHHHHHHcCCceEEEECC
Confidence 4555666666665222 223333456777777652 3333 44444 999999999999999999975 888888
Q ss_pred CCCHHHHhhc
Q 038595 491 AQFPDKIKLL 500 (534)
Q Consensus 491 Gtlpe~l~~L 500 (534)
|..-|.++.|
T Consensus 269 gFv~D~lETl 278 (322)
T TIGR00109 269 GFTADHLETL 278 (322)
T ss_pred cccccchhHH
Confidence 8775555544
No 421
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.26 E-value=2.6e+02 Score=24.22 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=37.4
Q ss_pred EEEECccchHHHHHHHHHHHHhhCC-CceEEECCCCCCc--cCcCCCCeEEEEeccCCCCCCchHHHHHHHHHH
Q 038595 72 LFFISQTGTSKTLAKRLHALLTSND-LLFDLVDPQTYEP--EDLSKEALVLIVASSWEDGKPPEAAKFFMNWID 142 (534)
Q Consensus 72 I~YgSqTGtTE~lAe~La~~L~~~G-l~v~V~dL~d~d~--~dL~~~~lvIfv~STYg~G~pPdna~~Fle~L~ 142 (534)
++||. |++...|..++..|...+ .++.+.+..++.. ..+...+++|+ +|.. |.-++ ....++.++
T Consensus 3 ~i~G~--G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~-iS~s--G~t~e-~~~~~~~a~ 70 (126)
T cd05008 3 LIVGC--GTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIA-ISQS--GETAD-TLAALRLAK 70 (126)
T ss_pred EEEEc--cHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEE-EeCC--cCCHH-HHHHHHHHH
Confidence 35554 789999999999998875 7887777333321 12334455444 4443 33333 334444443
No 422
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=22.10 E-value=1.2e+02 Score=28.82 Aligned_cols=36 Identities=11% Similarity=0.316 Sum_probs=27.1
Q ss_pred ccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceec
Q 038595 150 VGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVL 194 (534)
Q Consensus 150 v~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~ 194 (534)
.....|.|++++|+|+| ..++.+.++|+.+|.+.++
T Consensus 29 ~~~~~l~g~tvgIiG~G---------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 29 FPGRELRGKTVGIIGYG---------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp TTBS-STTSEEEEESTS---------HHHHHHHHHHHHTT-EEEE
T ss_pred CCccccCCCEEEEEEEc---------CCcCeEeeeeecCCceeEE
Confidence 34557899999999986 5588899999999985543
No 423
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=22.07 E-value=70 Score=33.53 Aligned_cols=24 Identities=4% Similarity=-0.133 Sum_probs=13.3
Q ss_pred EEEEEECccchHHHHHHHHHHHHh
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLT 93 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~ 93 (534)
.+|-.+...-|.-.|+-.|.....
T Consensus 81 CvvkH~g~~~tGl~mvGaiCDfCE 104 (314)
T PF06524_consen 81 CVVKHPGVFTTGLGMVGAICDFCE 104 (314)
T ss_pred eEEecCceeecccchhhhhhccch
Confidence 455555555555566666655443
No 424
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=22.07 E-value=1.7e+02 Score=25.37 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=32.5
Q ss_pred EEECccchHHHHHHHHHHHHhhCCCceEEEC------CCCCCccCcCCCCeEEEEec
Q 038595 73 FFISQTGTSKTLAKRLHALLTSNDLLFDLVD------PQTYEPEDLSKEALVLIVAS 123 (534)
Q Consensus 73 ~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~d------L~d~d~~dL~~~~lvIfv~S 123 (534)
.-+|-.-++-..|+.|.+.++++|+++.+.- .+.++.+++...+++|++.-
T Consensus 6 ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~ 62 (96)
T cd05569 6 ACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAAD 62 (96)
T ss_pred ECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecC
Confidence 3444445566778999999999999876441 22333345556677766543
No 425
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=21.92 E-value=3.8e+02 Score=26.67 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=29.3
Q ss_pred ECccchHHHHHHHHHHHHhhCCCceEEECCCCCC
Q 038595 75 ISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE 108 (534)
Q Consensus 75 gSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d 108 (534)
-..+|-++.++..|++.|.+.|++|.|+......
T Consensus 11 ~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~~ 44 (363)
T cd04955 11 PAKYGGFETFVEELAPRLVARGHEVTVYCRSPYP 44 (363)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCEEEEEccCCC
Confidence 3578999999999999999999999999776543
No 426
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=21.85 E-value=1.6e+02 Score=29.60 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHhcCCc-EEEEcCCCCHHHHhhcCC-C-ceEEEEeeCCC
Q 038595 469 PEINTLVDELHRRRIS-TFLVTNAQFPDKIKLLKP-V-TQLYVSVDAAT 514 (534)
Q Consensus 469 p~L~elI~~lk~~gi~-~~LvTNGtlpe~l~~L~~-v-~qlyvSlDA~~ 514 (534)
.++.++++.+|+.|+. +.+++..|-++.++.++. . ..+|+|++..+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~ 164 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPAT 164 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCC
Confidence 4788999999999998 556666676777776664 2 45778987664
No 427
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=21.82 E-value=65 Score=33.06 Aligned_cols=24 Identities=4% Similarity=0.227 Sum_probs=11.5
Q ss_pred cHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 470 EINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 470 ~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
.+.++++++|+.|+.+-=++||++
T Consensus 72 ~~~~Yl~~~k~lGf~~IEiS~G~~ 95 (237)
T TIGR03849 72 KFDEYLNECDELGFEAVEISDGSM 95 (237)
T ss_pred hHHHHHHHHHHcCCCEEEEcCCcc
Confidence 344444455555555445555543
No 428
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=21.68 E-value=5.6e+02 Score=26.75 Aligned_cols=84 Identities=12% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CCC----CeEEEEeccCCCCCC-chHHHHHHHHHHhhcCcc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SKE----ALVLIVASSWEDGKP-PEAAKFFMNWIDESANDF 148 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~~----~lvIfv~STYg~G~p-Pdna~~Fle~L~e~~~DF 148 (534)
...+|++|.+.+.+.|+++....--.+|..- + +.. .++-+.+.+.....| +.....|=+.|.+...+
T Consensus 97 ~~~lA~~i~~~l~~~gid~~~~~~~~lDHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~- 175 (278)
T PRK13364 97 DTELSWHIIESLVEEEFDITTCQEMLVDHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIAS- 175 (278)
T ss_pred CHHHHHHHHHHHHHcCCCeecccCCCCCcchhhhHHHhCcccCCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHh-
Confidence 4569999999999999987655433333211 1 122 133333333332222 44455566666665311
Q ss_pred cccccCCCCCeEEEEEecCcch
Q 038595 149 RVGSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 149 Rv~~~~Lkgl~yAVFGLGDs~Y 170 (534)
.-.+.+++|+|+|+-+.
T Consensus 176 -----~~~d~rV~iIaSG~LSH 192 (278)
T PRK13364 176 -----WPSDERVVVIGTGGLSH 192 (278)
T ss_pred -----cCCCCCEEEEEeCcccc
Confidence 11467899999999875
No 429
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=21.56 E-value=88 Score=31.84 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=34.0
Q ss_pred ccHHHhhhccCCceEEEeecCCCCCCccHHHHHHHHH--hcCCcEEEEcCCCC
Q 038595 443 VTLERLNEGLTPRHCALSLVGEPIMYPEINTLVDELH--RRRISTFLVTNAQF 493 (534)
Q Consensus 443 ~~~~~~~ea~~~~h~alSl~GEPlLyp~L~elI~~lk--~~gi~~~LvTNGtl 493 (534)
|+++.+.+++ .+=|+ .|.+.++++.++ +.|+.+.++|+|--
T Consensus 58 vt~~~I~~~l---------~~ip~-~pgm~~~l~~l~~~~~~~~~~IiSDaNs 100 (234)
T PF06888_consen 58 VTPEDIRDAL---------RSIPI-DPGMKELLRFLAKNQRGFDLIIISDANS 100 (234)
T ss_pred CCHHHHHHHH---------HcCCC-CccHHHHHHHHHhcCCCceEEEEeCCcH
Confidence 8888888876 45565 899999999994 46999999999974
No 430
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=21.19 E-value=1.2e+02 Score=28.07 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=34.0
Q ss_pred cHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCCCceEEEEeeCC
Q 038595 470 EINTLVDELHRRRISTFLVTNAQFPDKIKLLKPVTQLYVSVDAA 513 (534)
Q Consensus 470 ~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~v~qlyvSlDA~ 513 (534)
-|.|+|+.+|++||.|..=...+.-+.+.+-.| ++..++-|+.
T Consensus 45 llge~v~a~h~~Girv~ay~~~~~d~~~~~~HP-eW~~~~~~G~ 87 (132)
T PF14871_consen 45 LLGEQVEACHERGIRVPAYFDFSWDEDAAERHP-EWFVRDADGR 87 (132)
T ss_pred HHHHHHHHHHHCCCEEEEEEeeecChHHHHhCC-ceeeECCCCC
Confidence 469999999999999876666666566666666 9999888875
No 431
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=21.10 E-value=45 Score=40.34 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=10.2
Q ss_pred cEEEEEECccchH
Q 038595 69 KGKLFFISQTGTS 81 (534)
Q Consensus 69 kVlI~YgSqTGtT 81 (534)
+...+|..|||+-
T Consensus 1206 d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1206 DDALLYDVQTCSP 1218 (1516)
T ss_pred cceEEEecccCcH
Confidence 3677899999874
No 432
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=21.03 E-value=1e+02 Score=28.98 Aligned_cols=34 Identities=12% Similarity=0.319 Sum_probs=24.4
Q ss_pred eecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCC
Q 038595 460 SLVGEPIMYPEINTLVDELHRRRISTFLVTNAQF 493 (534)
Q Consensus 460 Sl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtl 493 (534)
++.|+-.++|...++++.+++.|+.++++|.=..
T Consensus 21 ~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~ 54 (157)
T smart00775 21 PIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPI 54 (157)
T ss_pred cccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcH
Confidence 3456667777888888888888877777776543
No 433
>PRK03881 hypothetical protein; Provisional
Probab=21.00 E-value=4.2e+02 Score=29.51 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEC-------CCCCCccC--------cCC--CCe-EEEEeccCCCCCCchHHHHHHHHHH
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVD-------PQTYEPED--------LSK--EAL-VLIVASSWEDGKPPEAAKFFMNWID 142 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~d-------L~d~d~~d--------L~~--~~l-vIfv~STYg~G~pPdna~~Fle~L~ 142 (534)
...+|+.|.+.+.+.|+++..++ -.....+. +.. .++ +|-++. + ...++....|-+.|.
T Consensus 90 d~eLA~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~lDHg~~VpL~fl~~~~~d~pVVpis~--~-~~~~~~~~~lG~aL~ 166 (467)
T PRK03881 90 DLELVEEIAEEAKKEGIPVVEVDEELARKYEVSGELDHGTMVPLYFLRKAGSDFKLVHISY--G-GLSPEELYKFGMAIR 166 (467)
T ss_pred CHHHHHHHHHHHHHcCCceEeecccccccccCCCCCCceEEeehhhhccccCCCCEEEEeC--C-CCCHHHHHHHHHHHH
Confidence 47899999999999999887764 11221221 111 122 222221 2 345666667766676
Q ss_pred hhcCcccccccCCCCCeEEEEEecCcchH------HHHHHHHHHHHHHHHH
Q 038595 143 ESANDFRVGSLLLSNCKFAVFGVGSKSYE------KTFNMVAKDLSKKMRE 187 (534)
Q Consensus 143 e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~------e~Fc~aAK~LDk~L~k 187 (534)
+...+ .+.+++|+|+||-+.. ..|...+..+|+++.+
T Consensus 167 ~~~~~--------~~~rvliIaSGdLSH~l~~~~p~g~~~~a~~fD~~ii~ 209 (467)
T PRK03881 167 EAAEE--------LGRKVVLIASGDLSHRLTPDGPYGYAPEGPEFDRAIVE 209 (467)
T ss_pred HHHHh--------cCCCEEEEEeCcccccCCCCCCCCCCcchHHHHHHHHH
Confidence 54211 2568999999997641 0122345667776644
No 434
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=20.96 E-value=42 Score=32.68 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=27.8
Q ss_pred ccchHHHHHHHHHHHHhhCCCceEEECCCCCC
Q 038595 77 QTGTSKTLAKRLHALLTSNDLLFDLVDPQTYE 108 (534)
Q Consensus 77 qTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d 108 (534)
++|++.++|..|+..|.++|+.|.+.+-++|+
T Consensus 3 L~G~~sKvaraiA~~LC~rgv~V~m~~~~~y~ 34 (164)
T PF12076_consen 3 LTGNTSKVARAIALALCRRGVQVVMLSKERYE 34 (164)
T ss_pred ecccccHHHHHHHHHHHhcCCEEEEecHHHHH
Confidence 47999999999999999999999988655553
No 435
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.85 E-value=8.2e+02 Score=26.03 Aligned_cols=109 Identities=9% Similarity=0.008 Sum_probs=70.6
Q ss_pred cEEEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCC-CccCc-------CC---CCeEEEEeccCC-----------
Q 038595 69 KGKLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTY-EPEDL-------SK---EALVLIVASSWE----------- 126 (534)
Q Consensus 69 kVlI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~-d~~dL-------~~---~~lvIfv~STYg----------- 126 (534)
++.|+....--.+..+++...+..++.|+..+++.+.+- +.+++ .+ -+-+++-.|--.
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I 114 (301)
T PRK14194 35 ALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAI 114 (301)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhcc
Confidence 588888888889999999999999999999998888532 21111 11 123333333210
Q ss_pred ------C---------------CCCchHHHHHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHH
Q 038595 127 ------D---------------GKPPEAAKFFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKM 185 (534)
Q Consensus 127 ------~---------------G~pPdna~~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L 185 (534)
+ +-.|-+...-++.|+.. ...|+|+.++|+|.|.. +++-+...|
T Consensus 115 ~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~-------~i~l~Gk~V~vIG~s~i--------vG~PmA~~L 179 (301)
T PRK14194 115 NPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDT-------CGDLTGKHAVVIGRSNI--------VGKPMAALL 179 (301)
T ss_pred CchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHh-------CCCCCCCEEEEECCCCc--------cHHHHHHHH
Confidence 1 11244455556666554 24789999999998633 355567777
Q ss_pred HHcCCce
Q 038595 186 RELGAGE 192 (534)
Q Consensus 186 ~kLGA~r 192 (534)
.+-|++.
T Consensus 180 ~~~gatV 186 (301)
T PRK14194 180 LQAHCSV 186 (301)
T ss_pred HHCCCEE
Confidence 7778754
No 436
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=20.77 E-value=67 Score=32.19 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=34.6
Q ss_pred CCCCCCccHHHHHHHHHhcCCcEEEEcCCC--C-HHHHhhcCC-----CceEEEEeeCC
Q 038595 463 GEPIMYPEINTLVDELHRRRISTFLVTNAQ--F-PDKIKLLKP-----VTQLYVSVDAA 513 (534)
Q Consensus 463 GEPlLyp~L~elI~~lk~~gi~~~LvTNGt--l-pe~l~~L~~-----v~qlyvSlDA~ 513 (534)
|+...-|...+|+++++++|+.|+++||=. . ...++.|.. .+.+++.-+..
T Consensus 112 ~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~~~~l~lr~~~~ 170 (229)
T PF03767_consen 112 GKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPGWDHLILRPDKD 170 (229)
T ss_dssp TGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTSTBSCGEEEEESS
T ss_pred ccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCccchhccccccc
Confidence 443334556799999999999999999943 2 334455542 36677766654
No 437
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=20.72 E-value=4.1e+02 Score=25.38 Aligned_cols=39 Identities=15% Similarity=-0.005 Sum_probs=30.8
Q ss_pred EEEEEECc-cchHHHHHHHHHHHHhhCCCceEEECCCCCC
Q 038595 70 GKLFFISQ-TGTSKTLAKRLHALLTSNDLLFDLVDPQTYE 108 (534)
Q Consensus 70 VlI~YgSq-TGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d 108 (534)
|+|+..+. .|-+++.+..+++.|.+.|+++.++......
T Consensus 2 Il~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 2 ILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred eEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 55555554 7888999999999998899999998776543
No 438
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=20.55 E-value=3.6e+02 Score=25.34 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=32.1
Q ss_pred EEEEECccchHHHHHHHHHHHHhhCCCceEEECCCCCCccCcCCCCeEEEEe
Q 038595 71 KLFFISQTGTSKTLAKRLHALLTSNDLLFDLVDPQTYEPEDLSKEALVLIVA 122 (534)
Q Consensus 71 lI~YgSqTGtTE~lAe~La~~L~~~Gl~v~V~dL~d~d~~dL~~~~lvIfv~ 122 (534)
.++||. |++..+|+.+...|...|.++..+. +.....+...+++|+++
T Consensus 36 I~i~G~--G~S~~~A~~~~~~l~~~g~~~~~~~--~~~~~~~~~~D~vI~iS 83 (179)
T cd05005 36 IFVYGA--GRSGLVAKAFAMRLMHLGLNVYVVG--ETTTPAIGPGDLLIAIS 83 (179)
T ss_pred EEEEec--ChhHHHHHHHHHHHHhCCCeEEEeC--CCCCCCCCCCCEEEEEc
Confidence 566774 7788999999999988888877754 22222344555555443
No 439
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=20.48 E-value=2.2e+02 Score=28.22 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=33.7
Q ss_pred CCCCCccHHHHHHHHHhcCCcEEEEcCCCCHHHHhhcCC--CceEEEEeeC
Q 038595 464 EPIMYPEINTLVDELHRRRISTFLVTNAQFPDKIKLLKP--VTQLYVSVDA 512 (534)
Q Consensus 464 EPlLyp~L~elI~~lk~~gi~~~LvTNGtlpe~l~~L~~--v~qlyvSlDA 512 (534)
...+.+...+.|+.++++|+.+.|.|--.++....-+.. ++...|+.++
T Consensus 18 ~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NG 68 (264)
T COG0561 18 NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNG 68 (264)
T ss_pred CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCC
Confidence 344778888999999999999999998888655443322 3434455444
No 440
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=20.43 E-value=6.5e+02 Score=26.10 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhCCCceEEECCCCCCccC------c-CCC-----CeEEEEeccCCCCC-CchHHHHHHHHHHhhcCc
Q 038595 81 SKTLAKRLHALLTSNDLLFDLVDPQTYEPED------L-SKE-----ALVLIVASSWEDGK-PPEAAKFFMNWIDESAND 147 (534)
Q Consensus 81 TE~lAe~La~~L~~~Gl~v~V~dL~d~d~~d------L-~~~-----~lvIfv~STYg~G~-pPdna~~Fle~L~e~~~D 147 (534)
...+|+.|.+.+.+.|+++....--.+|..- + +.. .++-+.++..-... .+.....|=+.|.+...+
T Consensus 97 ~~~LA~~i~~~~~~~g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~~~~vVpi~~~~~~~~l~~~~~~~~lG~al~~~i~~ 176 (277)
T cd07950 97 HAALAQHIAESLVADEFDLTFFQDKPLDHGCFSPLSLLLPHEDGWPVKVVPLQVGVLQFPLPTARRCYKLGQALRRAIES 176 (277)
T ss_pred CHHHHHHHHHHHHhcCCCeeeccCCCCCceeeeeHHHhCcccccCCCceEEEEEEeEecCCCCHHHHHHHHHHHHHHHHh
Confidence 5679999999999889887653222233211 1 111 13333344443222 233334555666665321
Q ss_pred ccccccCCCCCeEEEEEecCcch
Q 038595 148 FRVGSLLLSNCKFAVFGVGSKSY 170 (534)
Q Consensus 148 FRv~~~~Lkgl~yAVFGLGDs~Y 170 (534)
.-+..+++|+|+|+-+.
T Consensus 177 ------~~~d~rv~iIaSG~lSH 193 (277)
T cd07950 177 ------YPEDLKVAVVGTGGLSH 193 (277)
T ss_pred ------cCcCCCEEEEEcCcccc
Confidence 11467899999998875
No 441
>TIGR00522 dph5 diphthine synthase. This protein participates in the modification of a specific His of elongation factor 2 of eukarotes and Archaea to diphthamide. The protein was characterized in Saccharomyces cerevisiae and designated DPH5.
Probab=20.22 E-value=1.6e+02 Score=29.95 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.2
Q ss_pred ceEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCCCH
Q 038595 455 RHCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQFP 494 (534)
Q Consensus 455 ~h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGtlp 494 (534)
+.+++--.|.|++|-...+++..+++.|+.+.++-+-+-.
T Consensus 76 ~~Vv~l~~GDP~i~~~~~~l~~~l~~~~i~vevIPGiSs~ 115 (257)
T TIGR00522 76 KDVALLVAGDPMVATTHTDLKLEAKRKGIETRIIHGASIS 115 (257)
T ss_pred CCEEEEECCcCcccCCHHHHHHHHHHCCCeEEEECcHhHH
Confidence 6677777999999999999999999999999999776643
No 442
>PRK02947 hypothetical protein; Provisional
Probab=20.13 E-value=1.3e+02 Score=30.51 Aligned_cols=34 Identities=21% Similarity=0.134 Sum_probs=28.8
Q ss_pred eEEEeecCCCCCCccHHHHHHHHHhcCCcEEEEcCCC
Q 038595 456 HCALSLVGEPIMYPEINTLVDELHRRRISTFLVTNAQ 492 (534)
Q Consensus 456 h~alSl~GEPlLyp~L~elI~~lk~~gi~~~LvTNGt 492 (534)
.++||.+|+ .+++.++++.+|++|+++..+|+-.
T Consensus 110 ~i~iS~sG~---t~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 110 LIVVSNSGR---NPVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred EEEEeCCCC---CHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 366777797 6789999999999999999999864
No 443
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=20.10 E-value=9.5e+02 Score=24.62 Aligned_cols=131 Identities=10% Similarity=0.008 Sum_probs=69.2
Q ss_pred EEEEEECccchHHHHHHHHHHHHhh---CCCceEEECCCCCC-ccC---------cC-CCCeEEEEeccCCCCCCchHHH
Q 038595 70 GKLFFISQTGTSKTLAKRLHALLTS---NDLLFDLVDPQTYE-PED---------LS-KEALVLIVASSWEDGKPPEAAK 135 (534)
Q Consensus 70 VlI~YgSqTGtTE~lAe~La~~L~~---~Gl~v~V~dL~d~d-~~d---------L~-~~~lvIfv~STYg~G~pPdna~ 135 (534)
++++||....--+..++.|.+.+.. ..+++..+|..+.+ +.+ +. ...++++--+.+..+...+..+
T Consensus 3 ~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~~~~~~~~~~t~pff~~~rlVvv~~~~~~~~~~~~~~~ 82 (326)
T PRK07452 3 IYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQAIQALNEAMTPPFGSGGRLVWLKNSPLCQGCSEELLA 82 (326)
T ss_pred EEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchHHHHHHHHhcCCCCCCCceEEEEeCchhhccCCHHHHH
Confidence 7899999999999999999887742 34566677766664 222 12 2234443333333333333455
Q ss_pred HHHHHHHhhcCcccccccCCCCCeEEEEEecCcchHHHHHHHHHHHHHHHHHcCCceecceEEeeCCCCCcHHHHHHHHH
Q 038595 136 FFMNWIDESANDFRVGSLLLSNCKFAVFGVGSKSYEKTFNMVAKDLSKKMRELGAGEVLPVVEGDVDGGELDVVFEDWSK 215 (534)
Q Consensus 136 ~Fle~L~e~~~DFRv~~~~Lkgl~yAVFGLGDs~Y~e~Fc~aAK~LDk~L~kLGA~rV~plg~gD~~~g~~e~~f~eW~~ 215 (534)
.|.++|+.. ..-.+-||-..+. . ...+++.+++++.|...-+.. ... . -+..+..|..
T Consensus 83 ~L~~~l~~~-----------~~~~~li~~~~~~-~-----d~r~k~~k~l~k~~~~~~~~~--~~~--~-~~~~l~~~i~ 140 (326)
T PRK07452 83 ELERTLPLI-----------PENTHLLLTNTKK-P-----DGRLKSTKLLQKLAEEKEFSL--IPP--W-DTEGLKQLVE 140 (326)
T ss_pred HHHHHHcCC-----------CCCcEEEEEeCCC-c-----chHHHHHHHHHHceeEEEecC--CCc--c-cHHHHHHHHH
Confidence 677776532 1223445532211 1 113456677777654222211 111 1 1345778877
Q ss_pred HHHHHHH
Q 038595 216 RVVAILK 222 (534)
Q Consensus 216 ~L~~~L~ 222 (534)
+.+....
T Consensus 141 ~~~~~~g 147 (326)
T PRK07452 141 RTAQELG 147 (326)
T ss_pred HHHHHcC
Confidence 7665543
Done!