BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038596
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SKQ|A Chain A, Mdm38 Is A 14-3-3-Like Receptor And Associates With The
Protein Synthesis Machinery At The Inner Mitochondrial
Membrane
Length = 249
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 72/120 (60%), Gaps = 3/120 (2%)
Query: 1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERG 60
P+L M K+M + PFG D+ LRY +R +L+ I NDDK I EGVESLS+ EL + C RG
Sbjct: 101 PQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRG 160
Query: 61 MLGL-LSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDE 119
M +S E++ L+ WL+L L +PS L++LS FT G P+E S L ++
Sbjct: 161 MKAYGVSKEDLVDNLKVWLELRLRQKIPSVLMVLSSTFTFGG--LPKENYSKAFSPLAEK 218
>pdb|1WX0|A Chain A, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|B Chain B, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|C Chain C, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|D Chain D, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|E Chain E, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|F Chain F, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|G Chain G, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|H Chain H, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|I Chain I, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
pdb|1WX0|J Chain J, Crystal Structure Of Transaldolase From Thermus
Thermophilus Hb8
Length = 223
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 66 SVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLSSLPDEVVDTVG 125
S+EE+R+ + W LS V ++ ++++AF G+ EEA A L ++ + V V
Sbjct: 9 SLEEIRE-IAAWGVLS---GVTTNPTLVAKAFAAKGEALTEEAFAAHLRAICETVGGPVS 64
Query: 126 --VTALPSEDSVSERRR 140
VTAL +E V+E RR
Sbjct: 65 AEVTALEAEAMVAEGRR 81
>pdb|1Z28|A Chain A, Crystal Structures Of Sult1a2 And Sult1a13: Implications
In The Bioactivation Of N-Hydroxy-2-Acetylamino Fluorine
(Oh-Aaf)
Length = 295
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLS--- 114
E+ M+G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 160 EKFMVGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 212
Query: 115 -SLPDEVVDTV 124
SLP+E VD V
Sbjct: 213 RSLPEETVDFV 223
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 42 EGVESLSEAELR---EDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFT 98
EG+ ++ E E+ + ++ + G+ +++ Q ++D DL + +VP SL + +T
Sbjct: 48 EGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVKD-ADLVI-EAVPESLDLKRDIYT 105
Query: 99 VSGKLRPEEAVQATLSS--LPDEVVDTVG 125
G+L P + + AT SS LP ++V G
Sbjct: 106 KLGELAPAKTIFATNSSTLLPSDLVGYTG 134
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 30.0 bits (66), Expect = 0.62, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 101 GKLRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVS 136
K P+E VQ LSS E +D G ALP D+ +
Sbjct: 357 AKSAPQELVQQVLSSGWKEYIDVAGENALPRYDATA 392
>pdb|1LS6|A Chain A, Human Sult1a1 Complexed With Pap And P-Nitrophenol
pdb|2D06|A Chain A, Human Sult1a1 Complexed With Pap And Estradiol
pdb|2D06|B Chain B, Human Sult1a1 Complexed With Pap And Estradiol
Length = 295
Score = 29.6 bits (65), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATL---- 113
E+ M+G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 160 EKFMVGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 212
Query: 114 SSLPDEVVD 122
SLP+E VD
Sbjct: 213 HSLPEETVD 221
>pdb|3U3J|A Chain A, Crystal Structure Of Hsult1a1 Bound To Pap
pdb|3U3J|B Chain B, Crystal Structure Of Hsult1a1 Bound To Pap
Length = 314
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATL---- 113
E+ M+G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 180 EKFMVGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 232
Query: 114 SSLPDEVVD 122
SLP+E VD
Sbjct: 233 HSLPEETVD 241
>pdb|3U3K|A Chain A, Crystal Structure Of Hsult1a1 Bound To Pap And 2-Naphtol
pdb|3U3K|B Chain B, Crystal Structure Of Hsult1a1 Bound To Pap And 2-Naphtol
pdb|3U3M|A Chain A, Crystal Structure Of Human Sult1a1 Bound To Pap And
3-Cyano-7- Hydroxycoumarin
pdb|3U3O|A Chain A, Crystal Structure Of Human Sult1a1 Bound To Pap And Two
3-Cyano-7- Hydroxycoumarin
Length = 315
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATL---- 113
E+ M+G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 180 EKFMVGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 232
Query: 114 SSLPDEVVD 122
SLP+E VD
Sbjct: 233 HSLPEETVD 241
>pdb|3U3R|A Chain A, Crystal Structure Of D249g Mutated Human Sult1a1 Bound To
Pap And P- Nitrophenol
Length = 315
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATL---- 113
E+ M+G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 180 EKFMVGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 232
Query: 114 SSLPDEVVD 122
SLP+E VD
Sbjct: 233 HSLPEETVD 241
>pdb|4GRA|A Chain A, Crystal Structure Of Sult1a1 Bound With Pap
pdb|4GRA|B Chain B, Crystal Structure Of Sult1a1 Bound With Pap
Length = 299
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLS--- 114
E+ M+G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 164 EKFMVGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 216
Query: 115 -SLPDEVVD 122
SLP+E VD
Sbjct: 217 RSLPEETVD 225
>pdb|1Z29|A Chain A, Crystal Structures Of Sult1a2 And Sult1a13: Implications
In The Bioactivation Of N-Hydroxy-2-Acetylamino Fluorine
(Oh-Aaf)
Length = 295
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 54 EDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATL 113
E E+ M G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 156 ESFLEKFMAGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKIL 208
Query: 114 S----SLPDEVVD 122
SLP+E VD
Sbjct: 209 EFVGRSLPEETVD 221
>pdb|1CMZ|A Chain A, Solution Structure Of Gaip (Galpha Interacting Protein):
A Regulator Of G Protein Signaling
Length = 152
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 31 WIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQ 73
W ++ DKL+ + S+ A LR + E ML L+ EE++ +
Sbjct: 20 WAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAE 62
>pdb|3QVU|A Chain A, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And P-Nitrophenol
pdb|3QVU|B Chain B, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And P-Nitrophenol
pdb|3QVV|A Chain A, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And 3-Cyc
pdb|3QVV|B Chain B, Crystal Structure Of Ancestral Variant B9 Of Sult 1a1 In
Complex With Pap And 3-Cyc
Length = 295
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATL---- 113
E+ M+G + Q +++W +LS H V L L F K P+ +Q L
Sbjct: 160 EKFMVGEVCYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 212
Query: 114 SSLPDEVVD 122
SLP+E VD
Sbjct: 213 HSLPEETVD 221
>pdb|1ZV4|X Chain X, Structure Of The Regulator Of G-Protein Signaling 17
(Rgsz2)
Length = 158
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 29 LQWIKNDDKLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQ 73
L W +N DK+++A +L LR + E +L L+ E+++++
Sbjct: 31 LSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKE 75
>pdb|1CJM|A Chain A, Human Sult1a3 With Sulfate Bound
pdb|2A3R|A Chain A, Crystal Structure Of Human Sulfotransferase Sult1a3 In
Complex With Dopamine And 3-Phosphoadenosine 5-Phosphate
pdb|2A3R|B Chain B, Crystal Structure Of Human Sulfotransferase Sult1a3 In
Complex With Dopamine And 3-Phosphoadenosine 5-Phosphate
Length = 295
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 58 ERGMLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFTVSGKLRPEEAVQATLS--- 114
E+ M G +S Q +++W +LS H V L L F K P+ +Q L
Sbjct: 160 EKFMAGEVSYGSWYQHVQEWWELSRTHPV----LYL---FYEDMKENPKREIQKILEFVG 212
Query: 115 -SLPDEVVD 122
SLP+E +D
Sbjct: 213 RSLPEETMD 221
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 27.3 bits (59), Expect = 4.5, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 31 WIKNDDKLIQAEG-VESLSEAELREDCRERGMLGL-LSVEEMRQQLRDWLD 79
W ND K G +E++++A DCR G+L L L + +R ++ ++++
Sbjct: 134 WDFNDGKCKTGSGDIENMNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMN 184
>pdb|3QIS|A Chain A, Recognition Of The F&h Motif By The Lowe Syndrome Protein
Ocrl
Length = 366
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 56 CRERGMLGLLSVEEMRQQLRDWLDLSL-------NHSVPSSLLILSRA 96
C + + ++E QQ+ D LD S+ NHSV +LLI A
Sbjct: 215 CHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEA 262
>pdb|2QV2|A Chain A, A Role Of The Lowe Syndrome Protein Ocrl In Early Steps Of
The Endocytic Pathway
Length = 342
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 56 CRERGMLGLLSVEEMRQQLRDWLDLSL-------NHSVPSSLLILSRA 96
C + + ++E QQ+ D LD S+ NHSV +LLI A
Sbjct: 191 CHQEDLFQTPGMQEELQQIIDCLDTSIPETIPGSNHSVAEALLIFLEA 238
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 26.2 bits (56), Expect = 8.4, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 102 KLRPEEAVQATLSSLPDEVVDTVGVTALPSEDSVSERRRKLE 143
K R E+A+ AT +++ + +V GVT L + +V E +KLE
Sbjct: 391 KHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLE 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,004,673
Number of Sequences: 62578
Number of extensions: 137860
Number of successful extensions: 496
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 25
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)