Query 038596
Match_columns 163
No_of_seqs 164 out of 271
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 22:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3skq_A Mitochondrial distribut 100.0 7.2E-49 2.4E-53 329.8 13.1 122 1-122 101-249 (249)
2 2do1_A Nuclear protein HCC-1; 96.9 0.0021 7.1E-08 42.4 5.5 44 44-88 10-53 (55)
3 1jjr_A KU70, thyroid autoantig 96.7 0.00073 2.5E-08 52.9 2.7 79 1-79 67-150 (151)
4 1zrj_A E1B-55KDA-associated pr 96.3 0.0062 2.1E-07 39.4 4.6 36 44-79 10-45 (50)
5 2rnn_A E3 SUMO-protein ligase 96.3 0.024 8.2E-07 42.5 8.4 71 43-114 36-112 (114)
6 1h1j_S THO1 protein; SAP domai 96.0 0.012 4.2E-07 38.1 4.9 38 44-81 5-42 (51)
7 2kvu_A MKL/myocardin-like prot 95.9 0.015 5E-07 40.7 5.4 39 44-82 26-64 (75)
8 1jjr_A KU70, thyroid autoantig 94.0 0.052 1.8E-06 42.3 4.3 39 43-81 60-98 (151)
9 3cuq_B Vacuolar protein-sortin 70.1 12 0.00042 29.9 6.8 76 2-81 48-130 (218)
10 1jey_A KU70; double-strand DNA 62.7 1.6 5.3E-05 39.8 0.0 37 43-79 572-608 (609)
11 1zbh_A 3'-5' exonuclease ERI1; 54.1 15 0.0005 30.1 4.5 36 44-79 26-61 (299)
12 2do1_A Nuclear protein HCC-1; 52.0 16 0.00056 23.5 3.6 31 1-31 16-46 (55)
13 2rnn_A E3 SUMO-protein ligase 45.9 19 0.00066 26.6 3.5 32 2-33 44-75 (114)
14 2k27_A Paired box protein PAX- 43.5 27 0.00093 25.2 4.1 44 46-89 101-147 (159)
15 3skq_A Mitochondrial distribut 40.1 22 0.00074 29.6 3.4 38 43-80 94-131 (249)
16 2krx_A ASL3597 protein; struct 36.7 27 0.00091 25.1 3.0 28 65-92 24-51 (94)
17 1bb1_B Designed, thermostable 33.5 32 0.0011 20.2 2.4 22 140-161 2-23 (36)
18 3cuq_A Vacuolar-sorting protei 33.3 1.9E+02 0.0066 23.4 9.2 77 2-81 43-131 (234)
19 3ajm_A Programmed cell death p 31.9 27 0.00092 28.5 2.6 17 106-122 100-116 (213)
20 1p94_A Plasmid partition prote 30.8 67 0.0023 21.7 4.2 28 50-80 47-74 (76)
21 1h1j_S THO1 protein; SAP domai 25.9 81 0.0028 19.8 3.6 28 1-28 11-38 (51)
22 2k53_A A3DK08 protein; NESG, C 24.1 83 0.0028 20.9 3.6 27 49-79 38-64 (76)
23 1m5a_B Insulin B chain; alpha 21.9 37 0.0013 19.5 1.3 14 49-62 12-25 (30)
24 2ahq_A Sigma-54, RNA polymeras 21.8 41 0.0014 22.9 1.7 46 24-75 20-67 (76)
25 1jei_A Emerin; membrane protei 20.1 65 0.0022 20.6 2.3 35 43-77 2-40 (53)
No 1
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-49 Score=329.79 Aligned_cols=122 Identities=44% Similarity=0.738 Sum_probs=117.5
Q ss_pred ChHHHhHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHh
Q 038596 1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELREDCRERGMLG-LLSVEEMRQQLRDWLD 79 (163)
Q Consensus 1 pqLvalck~m~l~p~Gt~~~LR~rLr~rL~~L~~DD~~I~~EGv~sLs~~EL~~AC~~RGi~~-~~s~e~Lr~~L~~WL~ 79 (163)
|||++|||||||+||||++|||||||+|+++|++||++|.+|||++||.+||+.||++|||++ ++++++||.||++||+
T Consensus 101 ~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~I~~DDr~I~~EGV~sLs~~ELr~AC~~RGm~~~gls~e~LR~~L~~WL~ 180 (249)
T 3skq_A 101 PQLAAMSKFMSLRPFGNDNMLRYQIRSKLKDIMNDDKTIDYEGVESLSQEELYQACVSRGMKAYGVSKEDLVDNLKVWLE 180 (249)
T ss_dssp HHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHhCcccCCHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999998 5999999999999999
Q ss_pred hhcCCCCChHHHHhHhhhccCCCC--------------------------CcHHHHHHHHccCChHHhh
Q 038596 80 LSLNHSVPSSLLILSRAFTVSGKL--------------------------RPEEAVQATLSSLPDEVVD 122 (163)
Q Consensus 80 Lsl~~~ip~sLLllsra~~~~~~~--------------------------~~~~~l~~~ls~lPd~~~~ 122 (163)
||++++||+|||||||||+|++.. ++||||.+|||||||+|||
T Consensus 181 Lsl~~~vPssLLilSra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~vls~ipd~vyn 249 (249)
T 3skq_A 181 LRLRQKIPSVLMVLSSTFTFGGLPKENYSKAFSPLAEKKETKSKYDDLLDLYYDGILQVLSSIPDPVYN 249 (249)
T ss_dssp HHHTSCCCHHHHHHHHGGGSSSCCCCCCEEEECHHHHTSSSCCHHHHHHHHHHHHHHHHHHHSCCTTTC
T ss_pred HHccCCCCHHHHHHHHHHHccCcchhhhhhhccchhhhhhccchhhhhHHHHHHHHHHHHccCCccccC
Confidence 999999999999999999998752 3579999999999999996
No 2
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.89 E-value=0.0021 Score=42.44 Aligned_cols=44 Identities=27% Similarity=0.452 Sum_probs=38.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhcCCCCCh
Q 038596 44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNHSVPS 88 (163)
Q Consensus 44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Lsl~~~ip~ 88 (163)
+..|++.||+..|..||+.+.....+|.+.|..++.=. .+.+|+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~-~~~~~~ 53 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH-AESGPS 53 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT-CCSCCC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC-cccccC
Confidence 56899999999999999998888999999999999876 344554
No 3
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.72 E-value=0.00073 Score=52.89 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=25.4
Q ss_pred ChHHHhHHHhCCCCCCCcHHHHHHHHHHHHH-HHHHHHHHHH----hCcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 038596 1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQW-IKNDDKLIQA----EGVESLSEAELREDCRERGMLGLLSVEEMRQQLR 75 (163)
Q Consensus 1 pqLvalck~m~l~p~Gt~~~LR~rLr~rL~~-L~~DD~~I~~----EGv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~ 75 (163)
++|..+|+--||.+=|...=|--||...+.. .+.+|.-|.. ..+..||+.+|+.+|..+|+.+.+..++|.+.+.
T Consensus 67 ~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kve~s~eei~~~~~~g~l~klTV~~Lk~~l~~~gl~~~GkKaeLieRi~ 146 (151)
T 1jjr_A 67 PMLKEACRAYGLKSGLKKQELLEALTKHFQDKVEYSEEELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALT 146 (151)
T ss_dssp HHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-------------------------------------------------
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhccccHHHHHHHHhcCccccccHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 5799999999999999999888888765211 1123332222 2478999999999999999888888999999999
Q ss_pred HHHh
Q 038596 76 DWLD 79 (163)
Q Consensus 76 ~WL~ 79 (163)
+|++
T Consensus 147 ~~~~ 150 (151)
T 1jjr_A 147 KHFQ 150 (151)
T ss_dssp ----
T ss_pred HHhc
Confidence 9986
No 4
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=96.27 E-value=0.0062 Score=39.39 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=33.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596 44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLD 79 (163)
Q Consensus 44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~ 79 (163)
+..|++.||+..|..||+.+....++|.+.|..|+.
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 458999999999999999998889999999999875
No 5
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.024 Score=42.48 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=49.9
Q ss_pred CcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhcCC--CCChHHHHhHhhhc----cCCCCCcHHHHHHHHc
Q 038596 43 GVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSLNH--SVPSSLLILSRAFT----VSGKLRPEEAVQATLS 114 (163)
Q Consensus 43 Gv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Lsl~~--~ip~sLLllsra~~----~~~~~~~~~~l~~~ls 114 (163)
.+..|++.||+..|+++|+.+.+..++|-+.+.+||.-.... .=|.-+.- .+++- .+...+.++.|-.+|.
T Consensus 36 ~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~a-i~~lI~~~~~g~plP~~~~l~~alr 112 (114)
T 2rnn_A 36 LMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQA-VKFLIERIRKNEPLPVYKDLWNALR 112 (114)
T ss_dssp HHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHH-HHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHH-HHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 477999999999999999998889999999999999977653 33333322 22221 1344555666655543
No 6
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=95.97 E-value=0.012 Score=38.11 Aligned_cols=38 Identities=21% Similarity=0.055 Sum_probs=33.7
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhh
Q 038596 44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLS 81 (163)
Q Consensus 44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Ls 81 (163)
+.+|++.||+..|..||+.+.+..++|.+.|..+..=+
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~ 42 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEES 42 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHS
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999888999999999987643
No 7
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=95.91 E-value=0.015 Score=40.73 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=35.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhhc
Q 038596 44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLSL 82 (163)
Q Consensus 44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Lsl 82 (163)
+.+|++.||+..|..||+.+.....+|.+.|..|++-..
T Consensus 26 l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~~ 64 (75)
T 2kvu_A 26 LDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQIS 64 (75)
T ss_dssp TTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTTS
T ss_pred HHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHccC
Confidence 568999999999999999998889999999999987643
No 8
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=94.05 E-value=0.052 Score=42.33 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=34.9
Q ss_pred CcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhhh
Q 038596 43 GVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDLS 81 (163)
Q Consensus 43 Gv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~Ls 81 (163)
.+..|++.+|+..|..||+.+....++|.+.|..|++-.
T Consensus 60 ~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~K 98 (151)
T 1jjr_A 60 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDK 98 (151)
T ss_dssp CTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC-
T ss_pred cHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhh
Confidence 489999999999999999998888899999999997643
No 9
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=70.11 E-value=12 Score=29.93 Aligned_cols=76 Identities=29% Similarity=0.373 Sum_probs=56.7
Q ss_pred hHHHhHHHhCCC-C-----CCCcHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHH-HHHhcCCCCCCCHHHHHHHH
Q 038596 2 RLVNMCKYMGIS-P-----FGTDSYLRYMLRKRLQWIKNDDKLIQAEGVESLSEAELRE-DCRERGMLGLLSVEEMRQQL 74 (163)
Q Consensus 2 qLvalck~m~l~-p-----~Gt~~~LR~rLr~rL~~L~~DD~~I~~EGv~sLs~~EL~~-AC~~RGi~~~~s~e~Lr~~L 74 (163)
|+..||--+|+. | |+..+---+.|-.++..+-... ..+.| .-++..||.. ..+.||+ ..+|++++....
T Consensus 48 ~f~~m~~slGvd~Pl~~~~~~s~~~f~~ELa~qi~e~c~~~--~~~~G-G~I~L~dl~~~~nraRG~-~lVSp~Dl~~A~ 123 (218)
T 3cuq_B 48 RFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVP--LEERG-GIMSLTEVYCLVNRARGM-ELLSPEDLVNAC 123 (218)
T ss_dssp HHHHHHHHHTCCCHHHHTTSSCSCHHHHHHHHHHHHHHHHH--HHHTT-SEEEHHHHHHHHHHTCSS-SCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCcchhhccCcccHHHHHHHHHHHHHHHHH--HHhCC-CeEEHHHHHHHHHHHcCC-CCCCHHHHHHHH
Confidence 578899999998 5 2333344578888888888764 44444 2488889885 5688996 569999999999
Q ss_pred HHHHhhh
Q 038596 75 RDWLDLS 81 (163)
Q Consensus 75 ~~WL~Ls 81 (163)
+.|=.|-
T Consensus 124 ~~l~~Lg 130 (218)
T 3cuq_B 124 KMLEALK 130 (218)
T ss_dssp HTTTTTT
T ss_pred HHHHHcC
Confidence 9996654
No 10
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=62.73 E-value=1.6 Score=39.82 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=0.0
Q ss_pred CcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596 43 GVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLD 79 (163)
Q Consensus 43 Gv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~ 79 (163)
.+.+||+.+|+..|..+|+.+....++|.+.+.+|+.
T Consensus 572 ~l~~~tv~~Lk~~l~~~~~~~~~kK~~li~~i~~~~~ 608 (609)
T 1jey_A 572 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ 608 (609)
T ss_dssp -------------------------------------
T ss_pred CchhccHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Confidence 3889999999999999998877788999999999985
No 11
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=54.13 E-value=15 Score=30.14 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=32.9
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596 44 VESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLD 79 (163)
Q Consensus 44 v~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~ 79 (163)
|+.||.+||+...+..|+.+....+.|+..|+.|..
T Consensus 26 ~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~ 61 (299)
T 1zbh_A 26 INRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK 61 (299)
T ss_dssp HHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence 568999999999999999988888999999999985
No 12
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=52.04 E-value=16 Score=23.49 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.7
Q ss_pred ChHHHhHHHhCCCCCCCcHHHHHHHHHHHHH
Q 038596 1 PRLVNMCKYMGISPFGTDSYLRYMLRKRLQW 31 (163)
Q Consensus 1 pqLvalck~m~l~p~Gt~~~LR~rLr~rL~~ 31 (163)
++|.+.|+-.||.+-|+..=|-.||...+..
T Consensus 16 ~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~ 46 (55)
T 2do1_A 16 AELKQECLARGLETKGIKQDLIHRLQAYLEE 46 (55)
T ss_dssp HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 3689999999999999998888888877654
No 13
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=45.90 E-value=19 Score=26.60 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.2
Q ss_pred hHHHhHHHhCCCCCCCcHHHHHHHHHHHHHHH
Q 038596 2 RLVNMCKYMGISPFGTDSYLRYMLRKRLQWIK 33 (163)
Q Consensus 2 qLvalck~m~l~p~Gt~~~LR~rLr~rL~~L~ 33 (163)
+|+++||-.||..-|+..=|-.||..++..-.
T Consensus 44 ELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 44 ELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp HHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 69999999999999999999999988876544
No 14
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=43.50 E-value=27 Score=25.21 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHhhhcCCCCChH
Q 038596 46 SLSEAELREDCRERGML---GLLSVEEMRQQLRDWLDLSLNHSVPSS 89 (163)
Q Consensus 46 sLs~~EL~~AC~~RGi~---~~~s~e~Lr~~L~~WL~Lsl~~~ip~s 89 (163)
.+|..++...+...|+. ..+|...+..+|..|..-..+.-||++
T Consensus 101 ~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~ 147 (159)
T 2k27_A 101 TMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSG 147 (159)
T ss_dssp SSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCC
T ss_pred cchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCC
Confidence 58899999999988863 348999999999999998888777764
No 15
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=40.13 E-value=22 Score=29.61 Aligned_cols=38 Identities=18% Similarity=0.140 Sum_probs=34.5
Q ss_pred CcCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhh
Q 038596 43 GVESLSEAELREDCRERGMLGLLSVEEMRQQLRDWLDL 80 (163)
Q Consensus 43 Gv~sLs~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~L 80 (163)
++++|+...|...|+-=|+.+.++..-+|.+|+..+..
T Consensus 94 tLdnLsr~qLvaLck~m~L~p~gt~~~LR~rLr~rl~~ 131 (249)
T 3skq_A 94 VLDNLSRPQLAAMSKFMSLRPFGNDNMLRYQIRSKLKD 131 (249)
T ss_dssp HHHHSCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 57899999999999999999988999999999988754
No 16
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=36.74 E-value=27 Score=25.07 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhhhcCCCCChHHHH
Q 038596 65 LSVEEMRQQLRDWLDLSLNHSVPSSLLI 92 (163)
Q Consensus 65 ~s~e~Lr~~L~~WL~Lsl~~~ip~sLLl 92 (163)
+|++++..+|+.||.-.-.+.+|.-|--
T Consensus 24 LT~~Ell~~Lk~~L~~~~~~~LP~dL~~ 51 (94)
T 2krx_A 24 LTTIELLEKLKGELEKISFSDLPLELQK 51 (94)
T ss_dssp ECHHHHHHHHHHHHHHSCTTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccccCCHHHHh
Confidence 7899999999999998877888887643
No 17
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=33.51 E-value=32 Score=20.16 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcc
Q 038596 140 RKLEYLAMQEELIKEEEEKEGK 161 (163)
Q Consensus 140 ~kle~l~~qee~I~eE~~q~~~ 161 (163)
.|+..+|+++..|+||.+--++
T Consensus 2 ekiaaikeeqaaieeeiqaike 23 (36)
T 1bb1_B 2 EKIAAIKEEQAAIEEEIQAIKE 23 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888887764443
No 18
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=33.32 E-value=1.9e+02 Score=23.41 Aligned_cols=77 Identities=18% Similarity=0.384 Sum_probs=53.0
Q ss_pred hHHHhHHHhCCCCCCCcH-H---------HHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHH-HHHhcCCCC-CCCHHH
Q 038596 2 RLVNMCKYMGISPFGTDS-Y---------LRYMLRKRLQWIKNDDKLIQAEGVESLSEAELRE-DCRERGMLG-LLSVEE 69 (163)
Q Consensus 2 qLvalck~m~l~p~Gt~~-~---------LR~rLr~rL~~L~~DD~~I~~EGv~sLs~~EL~~-AC~~RGi~~-~~s~e~ 69 (163)
|...||--+|+.|.-++. | .-|.|-.++-.+-..=+ ..-| .-++..||.. ..+.||+.. .+|+++
T Consensus 43 ~F~~mc~siGVDPlas~kg~ws~~lG~gdfy~eLavqIvEvC~~tr--~~nG-Gli~L~el~~~~~r~Rg~~~~~IS~dD 119 (234)
T 3cuq_A 43 QFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALK--HRNG-GLITLEELHQQVLKGRGKFAQDVSQDD 119 (234)
T ss_dssp HHHHHHHHHTCCTTSCTTSHHHHHHCHHHHHHHHHHHHHHHHHHHH--HHHS-SEEEHHHHHHHHHHTTTTCCSSCCHHH
T ss_pred HHHHHHHHcCCCcccCCcchhhhhcCcchHHHHHHHHHHHHHHHHH--HhcC-CeeEHHHHHHHHHHhcCCccCccCHHH
Confidence 568999999999975431 1 13556666655554422 3334 3577788875 457899976 599999
Q ss_pred HHHHHHHHHhhh
Q 038596 70 MRQQLRDWLDLS 81 (163)
Q Consensus 70 Lr~~L~~WL~Ls 81 (163)
+....+.|=-|.
T Consensus 120 i~rAik~L~~LG 131 (234)
T 3cuq_A 120 LIRAIKKLKALG 131 (234)
T ss_dssp HHHHHHHHGGGB
T ss_pred HHHHHHHHHhcC
Confidence 999999886554
No 19
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=31.93 E-value=27 Score=28.48 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=14.2
Q ss_pred HHHHHHHHccCChHHhh
Q 038596 106 EEAVQATLSSLPDEVVD 122 (163)
Q Consensus 106 ~~~l~~~ls~lPd~~~~ 122 (163)
..+|+.+||.|||++-+
T Consensus 100 A~~LK~iLSrIPdEI~d 116 (213)
T 3ajm_A 100 ARALKQILSKIPDEIND 116 (213)
T ss_dssp HHHHHHHHHTHHHHTTC
T ss_pred HHHHHHHHHhCchhhcc
Confidence 47899999999997644
No 20
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=30.82 E-value=67 Score=21.66 Aligned_cols=28 Identities=18% Similarity=0.503 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHhh
Q 038596 50 AELREDCRERGMLGLLSVEEMRQQLRDWLDL 80 (163)
Q Consensus 50 ~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~L 80 (163)
..|..+|..+|+.. .+-+++-+..||.-
T Consensus 47 ~rlK~~Aa~~g~Sm---sdvvreli~~~L~~ 74 (76)
T 1p94_A 47 TRFKAACARKGTSI---TDVVNQLVDNWLKE 74 (76)
T ss_dssp HHHHHHHHHHTCCH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH---HHHHHHHHHHHHHh
Confidence 47889999999732 23477778888864
No 21
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=25.93 E-value=81 Score=19.78 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=23.8
Q ss_pred ChHHHhHHHhCCCCCCCcHHHHHHHHHH
Q 038596 1 PRLVNMCKYMGISPFGTDSYLRYMLRKR 28 (163)
Q Consensus 1 pqLvalck~m~l~p~Gt~~~LR~rLr~r 28 (163)
++|.+.|+--||++=|...=|--||..+
T Consensus 11 ~eLK~~Lk~RGL~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 11 VQLKDLLTKRNLSVGGLKNELVQRLIKD 38 (51)
T ss_dssp HHHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 3689999999999999988887777655
No 22
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=24.13 E-value=83 Score=20.88 Aligned_cols=27 Identities=11% Similarity=0.593 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 038596 49 EAELREDCRERGMLGLLSVEEMRQQLRDWLD 79 (163)
Q Consensus 49 ~~EL~~AC~~RGi~~~~s~e~Lr~~L~~WL~ 79 (163)
..-|.+||..+|+ +++.+.+.|+.-+.
T Consensus 38 ~~tLeeA~~~hgi----D~d~ll~eLn~~i~ 64 (76)
T 2k53_A 38 GESIEDACAVHGI----DADKLVKELNEYFE 64 (76)
T ss_dssp CSBHHHHHHHHTC----CHHHHHHHHHHHHH
T ss_pred cccHHHHHHHcCC----CHHHHHHHHHHHHh
Confidence 3458999999999 46778888877653
No 23
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=21.90 E-value=37 Score=19.52 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCC
Q 038596 49 EAELREDCRERGML 62 (163)
Q Consensus 49 ~~EL~~AC~~RGi~ 62 (163)
++-|+..|.+||+-
T Consensus 12 VdaL~~vCgdRGF~ 25 (30)
T 1m5a_B 12 VEALYLVCGERGFF 25 (30)
T ss_dssp HHHHHHHHGGGCEE
T ss_pred HHHHHHHhccCccc
Confidence 35688899999963
No 24
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=21.84 E-value=41 Score=22.85 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhC-cCCCCHHHHHHHHHhcCCCCC-CCHHHHHHHHH
Q 038596 24 MLRKRLQWIKNDDKLIQAEG-VESLSEAELREDCRERGMLGL-LSVEEMRQQLR 75 (163)
Q Consensus 24 rLr~rL~~L~~DD~~I~~EG-v~sLs~~EL~~AC~~RGi~~~-~s~e~Lr~~L~ 75 (163)
.++.+++. +|..|. -.-||++.|.......||+.. .+.+.+|++|+
T Consensus 20 ~Ik~~Ik~------lI~~Ed~~kPlSD~~I~~~L~~~Gi~IaRRTVaKYRe~l~ 67 (76)
T 2ahq_A 20 ELMKLIKE------IVENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLG 67 (76)
T ss_dssp HHHHHHHH------HGGGCCSSSCCCHHHHHHHHTTTSSCCCHHHHHHHHHHTC
T ss_pred HHHHHHHH------HHHhcCCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHcC
Confidence 45555554 345554 346999999999999999976 78889998874
No 25
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=20.12 E-value=65 Score=20.63 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=26.6
Q ss_pred CcCCCCHHHHHHHHHhcCCCCC-C---CHHHHHHHHHHH
Q 038596 43 GVESLSEAELREDCRERGMLGL-L---SVEEMRQQLRDW 77 (163)
Q Consensus 43 Gv~sLs~~EL~~AC~~RGi~~~-~---s~e~Lr~~L~~W 77 (163)
-|..||..||+.-...-|+..+ + ++.-....|..-
T Consensus 2 dv~~Lsd~eLr~~L~~~G~~~GPIt~sTRklYeKKL~~l 40 (53)
T 1jei_A 2 NYADLSDTELTTLLRRYNIPHGPVVGSTRRLYEKKIFEY 40 (53)
T ss_dssp CTTTCCHHHHHHHHSSSCCSCCCCCSGGGHHHHHHHHHT
T ss_pred cHHHcCHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Confidence 4789999999999999999864 3 344466666663
Done!