BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038597
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure
pdb|2P1N|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|D Chain D, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|A Chain A, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|A Chain A, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|A Chain A, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3OGK|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|A Chain A, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|C Chain C, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|E Chain E, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|G Chain G, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|I Chain I, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|K Chain K, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|M Chain M, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|O Chain O, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|A Chain A, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|C Chain C, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|E Chain E, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|G Chain G, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|I Chain I, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|K Chain K, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|M Chain M, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|O Chain O, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 160
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 7 VKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPL-QISSRNLAKVVEWCKCMQHR 65
+ L+S D E FEVE+ V ++S TI +M+EDD D +PL ++S+ LAKV+E+CK
Sbjct: 6 IVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEA 65
Query: 66 DRXXXXXXXXXXXXXXXXXXXXXXXVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIV 125
+ D+ F L+LAANYL I LL CQ AD++
Sbjct: 66 AASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMI 125
Query: 126 KGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGWAF 159
KGKTPEEIR TFNIK DFTPEEEE V E+ WAF
Sbjct: 126 KGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF 159
>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent
Ubiquitination By The Scffbx4 Ubiquitin Ligase
Length = 149
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 89/154 (57%), Gaps = 11/154 (7%)
Query: 5 STVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPL-QISSRNLAKVVEWCKCMQ 63
+++KL+S D E+FEV+ ++ QS TI+ M+ED D +PL +++ L KV++WC
Sbjct: 2 ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWC--TH 58
Query: 64 HRDRXXXXXXXXXXXXXXXXXXXXXXXVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123
H+D + D+ F L+LAANYL+I LL C+ A+
Sbjct: 59 HKD-------DPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAN 111
Query: 124 IVKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGW 157
++KGKTPEEIR+TFNIK DFT EEE V E+ W
Sbjct: 112 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 145
>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|F Chain F, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|H Chain H, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|J Chain J, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|L Chain L, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|N Chain N, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|P Chain P, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2OVP|A Chain A, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|A Chain A, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 149
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 11/153 (7%)
Query: 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPL-QISSRNLAKVVEWCKCMQH 64
++KL+S D E+FEV+ ++ QS TI+ M+ED D +PL +++ L KV++WC H
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWC--THH 59
Query: 65 RDRXXXXXXXXXXXXXXXXXXXXXXXVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADI 124
+D + D+ F L+LAANYL+I LL C+ A++
Sbjct: 60 KD-------DPGGSGTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM 112
Query: 125 VKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGW 157
+KGKTPEEIR+TFNIK DFT EEE V E+ W
Sbjct: 113 IKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 145
>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 145
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 15/153 (9%)
Query: 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPL-QISSRNLAKVVEWCKCMQH 64
++KL+S D E+FEV+ ++ QS TI+ M+ED D +PL +++ L KV++WC H
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWC--THH 59
Query: 65 RDRXXXXXXXXXXXXXXXXXXXXXXXVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADI 124
+D + D+ F L+LAANYL+I LL C+ A++
Sbjct: 60 KD-----------DPPDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM 108
Query: 125 VKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGW 157
+KGKTPEEIR+TFNIK DFT EEE V E+ W
Sbjct: 109 IKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 141
>pdb|2ASS|A Chain A, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|A Chain A, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 159
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 9/160 (5%)
Query: 5 STVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGE-----IPL-QISSRNLAKVVEW 58
+++KL+S D E+FEV+ ++ QS TI+ M+ED D E +PL +++ L KV++W
Sbjct: 1 ASIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQW 60
Query: 59 CKCMQHRDRXXXXXXXXXXXXXXXXXXX-XXXXVSEDKDLHFGLLLAANYLEIPALLHRL 117
C H+D + D+ F L+LAANYL+I LL
Sbjct: 61 C--THHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVT 118
Query: 118 CQLAADIVKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGW 157
C+ A+++KGKTPEEIR+TFNIK DFT EEE V E+ W
Sbjct: 119 CKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 158
>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|B Chain B, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
pdb|2E32|D Chain D, Structural Basis For Selection Of Glycosylated Substrate
By Scffbs1 Ubiquitin Ligase
Length = 166
Score = 102 bits (254), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 9/159 (5%)
Query: 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGE-----IPL-QISSRNLAKVVEWC 59
++KL+S D E+FEV+ ++ QS TI+ M+ED D E +PL +++ L KV++WC
Sbjct: 6 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWC 65
Query: 60 KCMQHRDRXXXXXXXXXXXXXXXXXXX-XXXXVSEDKDLHFGLLLAANYLEIPALLHRLC 118
H+D + D+ F L+LAANYL+I LL C
Sbjct: 66 --THHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC 123
Query: 119 QLAADIVKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGW 157
+ A+++KGKTPEEIR+TFNIK DFT EEE V E+ W
Sbjct: 124 KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 162
>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|C Chain C, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 169
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 10/164 (6%)
Query: 3 TTSTVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGE-------IPL-QISSRNLAK 54
TS V L SG+ E F V+K++ +S ++N + D D + +P+ + S L K
Sbjct: 5 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQK 64
Query: 55 VVEWCKCMQHRDRXXXXXXXXXXXXXXXXXXXXXXXVSEDKDLHFGLLLAANYLEIPALL 114
V+EW + HRD + D+++ + ++LAANYL I LL
Sbjct: 65 VIEWAE--HHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLL 122
Query: 115 HRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGWA 158
C++ A++++G++PEEIRRTFNI DFTPEEE A+ E+ WA
Sbjct: 123 DAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS1|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|D Chain D, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 141
Score = 93.2 bits (230), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPL-QISSRNLAKVVEWCKCMQH 64
++KL+S D E+FEV+ ++ QS TI+ M+ED D +PL +++ L KV++WC H
Sbjct: 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWC--THH 59
Query: 65 RDRXXXXXXXXXXXXXXXXXXX-XXXXVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123
+D + D+ F L+LAANYL+I LL C+ A+
Sbjct: 60 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAN 119
Query: 124 IVKGKTPEEIRRTFNIKKDFT 144
++KGKTPEEIR+TFNIK DFT
Sbjct: 120 MIKGKTPEEIRKTFNIKNDFT 140
>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|C Chain C, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 169
Score = 89.4 bits (220), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 3 TTSTVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGE---------IPLQISSRNLA 53
TS V L SG+ E F V+K++ +S ++N + D D + +P + S L
Sbjct: 5 VTSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDXGDDDDEDDDEIVXPVP-NVRSSVLQ 63
Query: 54 KVVEWCKCMQHRDRXXXXXXXXXXXXXXXXXXXXXXXVSEDKDLHFGLLLAANYLEIPAL 113
KV+EW + HRD + D++ + ++LAANYL I L
Sbjct: 64 KVIEWAE--HHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEXLYEIILAANYLNIKPL 121
Query: 114 LHRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGWA 158
L C++ A+ ++G++PEEIRRTFNI DFTPEEE A+ E+ WA
Sbjct: 122 LDAGCKVVAEXIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 166
>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 133
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 5/135 (3%)
Query: 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPL-QISSRNLAKVVEWCKCMQH 64
++KL+S D E+FEV+ ++ QS TI+ M+ED D +PL +++ L KV++WC H
Sbjct: 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWC--THH 58
Query: 65 RDRXXXXXXXXXXXXXXXXXXX-XXXXVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123
+D + D+ F L+LAANYL+I LL C+ A+
Sbjct: 59 KDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVAN 118
Query: 124 IVKGKTPEEIRRTFN 138
++KGKTPEEIR+TFN
Sbjct: 119 MIKGKTPEEIRKTFN 133
>pdb|3GR5|A Chain A, Periplasmic Domain Of The Outer Membrane Secretin Escc
From Enteropathogenic E.Coli (Epec)
Length = 156
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 5 STVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPLQISS 49
S+++ R G NE F ++ +S +R ++ D AA+ IP+ ISS
Sbjct: 5 SSLEKRLGKNEYF-----IITKSSPVRAILNDFAANYSIPVFISS 44
>pdb|3GSZ|A Chain A, Structure Of The Genotype 2b Hcv Polymerase
pdb|3GSZ|B Chain B, Structure Of The Genotype 2b Hcv Polymerase
pdb|3HVO|A Chain A, Structure Of The Genotype 2b Hcv Polymerase Bound To A Nni
pdb|3HVO|B Chain B, Structure Of The Genotype 2b Hcv Polymerase Bound To A Nni
Length = 563
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 99 FGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRR 135
+G + + N L++PA++ RL L A + +P E+ R
Sbjct: 448 YGAVYSVNPLDLPAIIERLHGLEAFSLHTYSPHELSR 484
>pdb|4ADP|A Chain A, Hcv-J6 Ns5b Polymerase V405i Mutant
Length = 579
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 94 DKDLHF---GLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRR 135
D++L+F G + + + L++PA++ RL L A + TP E+ R
Sbjct: 442 DQNLNFEMYGAVYSVSPLDLPAIIERLHGLDAFSLHTYTPHELTR 486
>pdb|2XWH|A Chain A, Hcv-J6 Ns5b Polymerase Structure At 1.8 Angstrom
Length = 563
Score = 26.9 bits (58), Expect = 4.6, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 94 DKDLHF---GLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRR 135
D++L+F G + + + L++PA++ RL L A + TP E+ R
Sbjct: 440 DQNLNFEMYGAVYSVSPLDLPAIIERLHGLDAFSLHTYTPHELTR 484
>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
Length = 426
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 125 VKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGWAFH 160
KG PEE + DFTP+ EAV D+ G+ H
Sbjct: 195 TKGSLPEEQLWSTEKYLDFTPKLFEAVRDKFGFNEH 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,986,230
Number of Sequences: 62578
Number of extensions: 126450
Number of successful extensions: 302
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 16
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)