Query 038597
Match_columns 161
No_of_seqs 119 out of 759
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 22:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 2.8E-54 9.5E-59 321.8 14.5 154 1-160 4-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 2.2E-52 7.5E-57 309.2 3.1 154 1-160 1-160 (160)
3 2ast_A S-phase kinase-associat 100.0 4.9E-48 1.7E-52 285.5 14.0 148 6-158 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 6E-45 2.1E-49 264.2 11.0 134 6-145 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 99.9 1E-26 3.6E-31 158.8 2.5 96 1-110 1-99 (99)
6 1vcb_B Protein (elongin C); tu 99.9 1.8E-25 6.2E-30 155.7 3.4 91 4-110 16-112 (112)
7 2fnj_C Transcription elongatio 99.9 2.2E-25 7.4E-30 151.4 1.8 90 5-110 1-96 (96)
8 4ajy_C Transcription elongatio 99.9 2.6E-22 8.8E-27 136.4 5.3 89 6-110 3-97 (97)
9 2yy9_A Zinc finger and BTB dom 99.1 2E-10 7E-15 81.4 6.1 96 6-130 27-124 (135)
10 2vkp_A BTB/POZ domain-containi 99.0 2.9E-09 9.8E-14 72.2 9.1 93 5-124 9-108 (109)
11 1buo_A POZ domain, protein (pr 98.9 9E-09 3.1E-13 71.3 9.4 91 5-125 29-121 (121)
12 2q81_A MIZ-1 protein; BTB/POZ 98.9 1.5E-08 5.2E-13 70.0 9.5 87 6-122 29-117 (119)
13 3b84_A Zinc finger and BTB dom 98.9 8.4E-09 2.9E-13 71.3 7.9 89 6-123 26-116 (119)
14 3htm_A Speckle-type POZ protei 98.9 2.3E-08 7.8E-13 72.8 10.4 101 6-134 36-141 (172)
15 2if5_A Zinc finger and BTB dom 98.8 2.4E-08 8.3E-13 68.8 9.6 89 5-121 26-119 (120)
16 1r29_A B-cell lymphoma 6 prote 98.8 4.7E-08 1.6E-12 68.1 9.4 90 6-123 31-125 (127)
17 2ppi_A Gigaxonin; BTB domain, 98.8 2.7E-08 9.1E-13 71.2 7.9 88 6-121 49-143 (144)
18 2vpk_A Myoneurin; transcriptio 98.7 7.4E-08 2.5E-12 66.0 9.5 88 6-122 24-115 (116)
19 4eoz_A Speckle-type POZ protei 98.7 1.5E-08 5E-13 71.8 6.0 98 5-130 26-128 (145)
20 3ga1_A Nucleus accumbens-assoc 98.7 2.7E-08 9.2E-13 69.6 5.1 89 6-123 35-126 (129)
21 2z8h_A Transcription regulator 98.6 5.6E-08 1.9E-12 68.8 6.5 94 6-127 38-135 (138)
22 3hve_A Gigaxonin; ubiquitin, c 98.6 8.9E-08 3E-12 74.2 6.9 94 6-127 33-133 (256)
23 3hqi_A Speckle-type POZ protei 98.6 4.6E-07 1.6E-11 72.1 10.2 102 5-134 175-281 (312)
24 3m5b_A Zinc finger and BTB dom 98.5 6.6E-08 2.2E-12 67.1 3.5 84 6-123 32-117 (119)
25 3i3n_A Kelch-like protein 11; 98.5 1.9E-07 6.5E-12 73.3 6.3 102 5-133 33-147 (279)
26 3ohu_A Transcription regulator 98.5 3.7E-08 1.3E-12 68.4 1.6 87 6-120 34-124 (125)
27 3fkc_A Transcriptional regulat 98.5 5.3E-07 1.8E-11 62.0 7.5 80 6-115 33-115 (116)
28 2ihc_A Transcription regulator 98.3 1.3E-07 4.3E-12 65.8 1.9 88 6-121 31-122 (124)
29 3drz_A BTB/POZ domain-containi 93.2 0.94 3.2E-05 30.0 9.0 93 4-123 5-106 (107)
30 3drx_A BTB/POZ domain-containi 72.3 6.9 0.00024 29.1 5.3 94 4-124 11-113 (202)
31 3tnt_A SARS coronavirus main p 71.0 4.6 0.00016 31.6 4.1 98 43-148 191-296 (306)
32 2k9n_A MYB24; R2R3 domain, DNA 63.3 9.4 0.00032 24.9 4.0 36 119-154 25-67 (107)
33 1gv2_A C-MYB, MYB proto-oncoge 58.3 7.9 0.00027 25.1 2.9 36 119-154 28-70 (105)
34 1h8a_C AMV V-MYB, MYB transfor 58.0 16 0.00054 24.6 4.5 55 94-153 31-92 (128)
35 2xf7_A GP23.1; viral protein; 54.6 15 0.00051 20.5 3.1 36 121-158 11-47 (51)
36 3g5o_A Uncharacterized protein 50.5 26 0.00089 23.0 4.5 49 93-141 47-97 (108)
37 3kvt_A Potassium channel prote 50.5 9.6 0.00033 25.5 2.4 59 1-60 1-65 (115)
38 3osg_A MYB21; transcription-DN 49.4 21 0.00072 23.9 4.0 36 118-153 33-75 (126)
39 4eef_G F-HB80.4, designed hema 49.0 4.2 0.00014 25.3 0.3 43 94-140 26-68 (74)
40 1wgx_A KIAA1903 protein; MYB D 48.8 11 0.00038 23.3 2.3 20 119-138 35-54 (73)
41 3zqc_A MYB3; transcription-DNA 46.8 10 0.00035 25.7 2.0 35 119-153 26-67 (131)
42 2cqq_A RSGI RUH-037, DNAJ homo 46.2 14 0.00048 22.6 2.4 19 119-138 35-53 (72)
43 3mkl_A HTH-type transcriptiona 46.1 57 0.002 21.0 9.0 79 47-141 4-85 (120)
44 1pd7_B MAD1; PAH2, SIN3, eukar 45.2 4.4 0.00015 19.9 -0.0 12 98-109 5-16 (26)
45 3htm_A Speckle-type POZ protei 45.0 26 0.0009 24.0 4.1 47 80-127 120-166 (172)
46 1ug2_A 2610100B20RIK gene prod 44.5 16 0.00054 23.7 2.5 42 94-138 37-78 (95)
47 2q6f_A Fragment, infectious br 43.7 26 0.0009 27.4 4.1 65 77-148 233-299 (309)
48 2jsp_A Transcriptional regulat 38.8 14 0.00047 23.7 1.6 18 127-144 43-60 (87)
49 1s1g_A Potassium voltage-gated 38.6 33 0.0011 23.1 3.6 87 5-120 13-107 (124)
50 3d23_B 3C-like proteinase; mai 37.6 28 0.00096 27.1 3.4 99 41-148 191-295 (302)
51 2qq4_A Iron-sulfur cluster bio 37.2 34 0.0012 23.5 3.6 37 101-137 53-90 (138)
52 1h89_C C-MYB, MYB proto-oncoge 36.6 32 0.0011 23.9 3.4 35 119-153 82-123 (159)
53 2eqx_A Kelch repeat and BTB do 36.5 24 0.00081 22.7 2.5 47 92-138 7-62 (105)
54 3lvl_A NIFU-like protein; prot 36.4 32 0.0011 23.3 3.3 38 101-138 53-91 (129)
55 3tlo_A 3CL-Pro, 3CLP, 3C-like 36.0 18 0.00061 28.2 2.1 98 42-148 190-293 (303)
56 1x41_A Transcriptional adaptor 36.0 27 0.00091 20.2 2.5 38 95-137 13-50 (60)
57 1jr5_A 10 kDa anti-sigma facto 35.6 26 0.0009 22.4 2.5 30 129-161 50-79 (90)
58 1xjs_A NIFU-like protein; SR17 35.3 37 0.0013 23.5 3.6 38 101-138 55-93 (147)
59 2cjj_A Radialis; plant develop 34.6 23 0.00078 22.8 2.1 21 118-138 34-54 (93)
60 3i3n_A Kelch-like protein 11; 33.9 65 0.0022 24.1 5.1 59 80-139 127-194 (279)
61 4b0z_A RPN12, 26S proteasome r 33.3 28 0.00095 25.9 2.8 65 94-161 149-221 (229)
62 2ra2_A Putative lipoprotein; X 33.0 30 0.001 20.8 2.4 18 1-19 1-18 (64)
63 1su0_B NIFU like protein ISCU; 32.8 49 0.0017 23.3 3.9 38 101-138 54-92 (159)
64 2eqr_A N-COR1, N-COR, nuclear 32.5 27 0.00091 20.3 2.1 20 119-138 35-54 (61)
65 3hm5_A DNA methyltransferase 1 32.3 48 0.0016 21.3 3.4 19 119-137 53-76 (93)
66 3d55_A Antitoxin, uncharacteri 32.1 26 0.0009 22.0 2.1 45 96-140 41-90 (91)
67 3hve_A Gigaxonin; ubiquitin, c 31.9 74 0.0025 23.4 5.0 68 92-160 130-207 (256)
68 4eo3_A Bacterioferritin comigr 31.6 13 0.00043 29.2 0.6 36 98-143 245-280 (322)
69 2yus_A SWI/SNF-related matrix- 31.4 34 0.0011 21.2 2.5 40 93-138 21-60 (79)
70 2lr8_A CAsp8-associated protei 37.4 10 0.00035 23.2 0.0 21 117-138 38-58 (70)
71 1bl0_A Protein (multiple antib 30.5 1.1E+02 0.0039 19.8 9.7 20 47-68 8-27 (129)
72 3few_X Colicin S4; cell lysis, 30.1 51 0.0018 27.2 3.9 28 117-144 164-191 (505)
73 3oio_A Transcriptional regulat 29.7 1.1E+02 0.0037 19.3 9.7 79 48-141 5-86 (113)
74 1tc3_C Protein (TC3 transposas 29.0 55 0.0019 16.7 2.9 17 124-140 18-34 (51)
75 2yum_A ZZZ3 protein, zinc fing 29.0 38 0.0013 20.3 2.4 20 118-137 36-55 (75)
76 1ni7_A ER75, hypothetical prot 28.7 80 0.0027 22.2 4.4 35 112-146 86-128 (155)
77 2cqr_A RSGI RUH-043, DNAJ homo 28.7 18 0.0006 22.2 0.8 21 118-138 44-64 (73)
78 2elk_A SPCC24B10.08C protein; 28.1 44 0.0015 19.1 2.5 39 94-137 13-52 (58)
79 3lsg_A Two-component response 28.0 1.1E+02 0.0037 18.9 9.3 79 49-141 1-82 (103)
80 2z7e_A ISCU protein, NIFU-like 27.8 38 0.0013 23.9 2.5 38 101-138 52-90 (157)
81 2ki0_A DS119; beta-alpha-beta, 27.6 37 0.0013 17.3 1.8 11 144-154 13-23 (36)
82 3gag_A Putative NADH dehydroge 25.9 19 0.00066 25.6 0.7 35 99-143 141-175 (206)
83 3g0m_A Cysteine desulfuration 25.5 70 0.0024 22.1 3.5 33 113-145 80-120 (141)
84 4eb5_C NIFU protein (NIFU-1); 25.4 49 0.0017 23.3 2.7 37 101-137 47-84 (153)
85 1dd4_C 50S ribosomal protein L 25.4 86 0.0029 16.8 3.2 23 119-141 4-33 (40)
86 1a92_A Delta antigen; leucine 25.4 26 0.00088 19.8 1.0 13 146-158 28-40 (50)
87 3mn2_A Probable ARAC family tr 25.3 1.3E+02 0.0043 18.7 9.1 77 50-141 2-83 (108)
88 3phx_B Ubiquitin-like protein 25.2 49 0.0017 19.5 2.5 22 1-22 1-22 (79)
89 3ge6_A Nitroreductase; structu 25.1 13 0.00044 26.7 -0.4 19 125-143 163-182 (212)
90 1vfr_A NAD(P)H\:FMN oxidoreduc 24.5 13 0.00044 26.7 -0.5 35 99-143 148-183 (218)
91 1x3u_A Transcriptional regulat 24.0 74 0.0025 18.5 3.1 18 124-141 28-45 (79)
92 2kw0_A CCMH protein; oxidoredu 23.5 53 0.0018 21.0 2.4 17 121-137 49-66 (90)
93 3h4o_A Nitroreductase family p 22.9 21 0.00073 25.5 0.4 36 98-143 119-154 (191)
94 2rb6_A Uncharacterized protein 22.8 80 0.0027 18.7 2.9 14 6-19 4-17 (61)
95 2hl7_A Cytochrome C-type bioge 22.7 56 0.0019 20.6 2.4 12 126-137 58-69 (84)
96 2fre_A NAD(P)H-flavin oxidored 22.4 29 0.00098 24.7 1.1 37 97-143 117-153 (200)
97 1nox_A NADH oxidase; flavoenzy 22.2 18 0.00062 25.6 -0.1 18 126-143 158-175 (205)
98 2cu7_A KIAA1915 protein; nucle 22.0 62 0.0021 19.2 2.4 33 99-137 18-50 (72)
99 1d5y_A ROB transcription facto 21.8 2.4E+02 0.0082 20.7 8.8 17 50-68 3-19 (292)
100 2f2c_A Cyclin homolog, V-cycli 21.8 91 0.0031 23.1 3.9 41 112-152 95-136 (254)
101 2nz0_B Potassium voltage-gated 21.8 40 0.0014 23.2 1.7 89 5-120 35-129 (140)
102 3bem_A Putative NAD(P)H nitror 21.5 18 0.00063 26.1 -0.1 35 99-143 152-186 (218)
103 3kdf_A Replication protein A 1 21.3 74 0.0025 21.3 2.9 19 4-22 38-56 (121)
104 1guu_A C-MYB, MYB proto-oncoge 21.0 48 0.0016 18.2 1.6 19 119-137 27-45 (52)
105 4fe7_A Xylose operon regulator 20.7 3E+02 0.01 21.4 10.0 79 47-140 302-383 (412)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=2.8e-54 Score=321.81 Aligned_cols=154 Identities=40% Similarity=0.748 Sum_probs=132.2
Q ss_pred CCCCCeEEEEeCCCCEEEecHHHHHHHHHHHHHhhhccC-----C--Cccccc-ccHHHHHHHHHHhhcccccCCCCCCC
Q 038597 1 MATTSTVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAA-----D--GEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNND 72 (161)
Q Consensus 1 m~~~~~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~~-----~--~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~ 72 (161)
|++ ++|+|+|+||++|.|++.+|++|++|++|+++.|. + .+|||| |++.+|++|++||+ ||+.++++..
T Consensus 4 m~~-~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~--~h~~~~~~~~ 80 (169)
T 3v7d_A 4 MVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAE--HHRDSNFPDE 80 (169)
T ss_dssp --C-CEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHH--HTTTCCCCC-
T ss_pred CCC-CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHH--HcccCCCccc
Confidence 666 89999999999999999999999999999997653 3 789999 99999999999999 9998865432
Q ss_pred C--c-chhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCCCHHHHH
Q 038597 73 N--K-EEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEE 149 (161)
Q Consensus 73 ~--~-~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~ 149 (161)
. + +....+++||++| ++++...||+||.||+||+|++|+++||++||++|+||||+|||++|||++|||||||+
T Consensus 81 ~~~~~~~~~~i~~wD~~F---l~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~ 157 (169)
T 3v7d_A 81 DDDDSRKSAPVDSWDREF---LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEA 157 (169)
T ss_dssp -------CCCCCHHHHHH---TCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHH
T ss_pred ccccccccccccHHHHHH---HcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 1 1 3445789999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCC
Q 038597 150 AVMDEHGWAFH 160 (161)
Q Consensus 150 ~i~~e~~w~~~ 160 (161)
++|+||+|+|+
T Consensus 158 ~ir~en~W~~~ 168 (169)
T 3v7d_A 158 AIRRENEWAED 168 (169)
T ss_dssp HHHTTC-----
T ss_pred HHHHhcccccc
Confidence 99999999997
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=2.2e-52 Score=309.19 Aligned_cols=154 Identities=48% Similarity=0.827 Sum_probs=88.1
Q ss_pred CCCCCeEEEEeCCCCEEEecHHHHHHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCC-----c
Q 038597 1 MATTSTVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDN-----K 74 (161)
Q Consensus 1 m~~~~~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~-----~ 74 (161)
|++ ++|+|+|+||++|.|++.+|.+|++|++|+++.+...+|||| |++.+|++|++||+ ||+.++++... .
T Consensus 1 ~~~-~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~--~h~~~~~~~~~~~~~~~ 77 (160)
T 2p1m_A 1 MSA-KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCK--RHVEAAASKAEAVEGAA 77 (160)
T ss_dssp --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------------------
T ss_pred CCC-CEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHH--HcccCCCcccccccccc
Confidence 444 789999999999999999999999999999987767899999 99999999999999 99987543221 1
Q ss_pred chhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCCCHHHHHHHHHh
Q 038597 75 EEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEEAVMDE 154 (161)
Q Consensus 75 ~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~~e 154 (161)
.....+++||++| ++++.+.|++|+.||+||+|++|+++||++||++|+|||++|||++|||++||||||+++||+|
T Consensus 78 ~~~~~i~~wD~~F---l~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 78 TSDDDLKAWDADF---MKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRE 154 (160)
T ss_dssp --------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred cccchhhHHHHHH---HcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 2456789999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 038597 155 HGWAFH 160 (161)
Q Consensus 155 ~~w~~~ 160 (161)
|+|+|+
T Consensus 155 n~w~~~ 160 (160)
T 2p1m_A 155 NQWAFE 160 (160)
T ss_dssp HHHHHC
T ss_pred CccccC
Confidence 999986
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=4.9e-48 Score=285.54 Aligned_cols=148 Identities=43% Similarity=0.801 Sum_probs=132.0
Q ss_pred eEEEEeCCCCEEEecHHHHHHHHHHHHHhhhcc-C----CCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCc----c
Q 038597 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDA-A----DGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNK----E 75 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~-~----~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~----~ 75 (161)
.|+|+|+||++|.|++.+|.+|++|++|+++.+ . ..+|||| |++.+|++|++||+ +|+.++++..+. .
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~--~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT--HHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHH--HTTTCCC----------
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHH--HcCcCCCCccccccccc
Confidence 489999999999999999999999999999743 2 2689999 99999999999999 999876543321 2
Q ss_pred hhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCCCHHHHHHHHHhc
Q 038597 76 EEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEEAVMDEH 155 (161)
Q Consensus 76 ~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~ 155 (161)
....+++||++| ++++.+.+++|+.||+||+|++|+++||+++|++|+|||++|||++|||++||||||+++||+||
T Consensus 80 ~~~~i~~wD~~F---~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en 156 (159)
T 2ast_A 80 RTDDIPVWDQEF---LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156 (159)
T ss_dssp -CCCCCHHHHHH---TCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHT
T ss_pred chhhhhHHHHHH---HcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhC
Confidence 345789999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 038597 156 GWA 158 (161)
Q Consensus 156 ~w~ 158 (161)
+|+
T Consensus 157 ~w~ 159 (159)
T 2ast_A 157 QWC 159 (159)
T ss_dssp TTC
T ss_pred CCC
Confidence 997
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=6e-45 Score=264.19 Aligned_cols=134 Identities=43% Similarity=0.790 Sum_probs=110.4
Q ss_pred eEEEEeCCCCEEEecHHHHHHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCC----cchhhhH
Q 038597 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDN----KEEEEEE 80 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~----~~~~~~~ 80 (161)
.|+|+|+||++|.|++.+|.+|++|++|+++.| .++|||| |++.+|++|++||+ ||+.++++..+ ......+
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~--~h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCT--HHKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHH--HHTTCC----------------
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHH--HhccCCCccccccccccchhhh
Confidence 599999999999999999999999999999866 7799999 99999999999999 99987654322 1245678
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCCCH
Q 038597 81 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDFTP 145 (161)
Q Consensus 81 ~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~ 145 (161)
++||++| ++++.+.+++|+.||+||+|++|+++||++||++|+|||++|||++|||++||||
T Consensus 80 ~~wD~~F---~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 80 PVWDQEF---LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp -HHHHHH---TCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred hHHHHHH---HhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 9999999 8999999999999999999999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.92 E-value=1e-26 Score=158.75 Aligned_cols=96 Identities=30% Similarity=0.481 Sum_probs=80.0
Q ss_pred CCCCCeEEEEeCCCCEEEecHHHHHHHHHHHHHhhhcc--CCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchh
Q 038597 1 MATTSTVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDA--ADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEE 77 (161)
Q Consensus 1 m~~~~~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~--~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~ 77 (161)
|++ ++|+|+|+||++|.|++.+|++|++|++|+++.. ..++|||| |++.+|++|++||+ ||+.++.+.. ..
T Consensus 1 m~~-~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~--~h~~~~~~~~---~~ 74 (99)
T 1hv2_A 1 MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLN--YNLKYSGVSE---DD 74 (99)
T ss_dssp CCC-SEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHH--HHHHHHHHCS---SC
T ss_pred CCC-cEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHH--HhcccCCCcc---cc
Confidence 666 7999999999999999999999999999999732 23789999 99999999999999 9996543211 11
Q ss_pred hhHHHHHHhhhhhhcCChHHHHHHHHhhccCCc
Q 038597 78 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 110 (161)
Q Consensus 78 ~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I 110 (161)
..+++| +++++.||+|+.|||||+|
T Consensus 75 ~~i~~w--------~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 75 DEIPEF--------EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp SSCCCC--------CCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCc--------cCCHHHHHHHHHHHHHhCc
Confidence 234443 5899999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.91 E-value=1.8e-25 Score=155.71 Aligned_cols=91 Identities=30% Similarity=0.436 Sum_probs=76.6
Q ss_pred CCeEEEEeCCCCEEEecHHHHHHHHHHHHHhhhccC-----CCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchh
Q 038597 4 TSTVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAA-----DGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEE 77 (161)
Q Consensus 4 ~~~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~~-----~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~ 77 (161)
+++|+|+|+||++|.|++.+|++|++|++|+++.+. ..+|||| |++.+|+||++||+ ||+.++...
T Consensus 16 ~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~--~h~~~~~~~------ 87 (112)
T 1vcb_B 16 AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT--YKVRYTNSS------ 87 (112)
T ss_dssp -CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHH--HHHHHSSCS------
T ss_pred CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHH--HhhhccCCc------
Confidence 578999999999999999999999999999987542 2589999 99999999999999 998754321
Q ss_pred hhHHHHHHhhhhhhcCChHHHHHHHHhhccCCc
Q 038597 78 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 110 (161)
Q Consensus 78 ~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I 110 (161)
..+++| +++++.||+|+.|||||+|
T Consensus 88 ~~i~~w--------~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 88 TEIPEF--------PIAPEIALELLMAANFLDC 112 (112)
T ss_dssp SCCCCC--------CCCHHHHHHHHHHHHHHTC
T ss_pred CCCCCc--------ccCHHHHHHHHHHHHHhCc
Confidence 234443 6899999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.90 E-value=2.2e-25 Score=151.41 Aligned_cols=90 Identities=30% Similarity=0.439 Sum_probs=75.7
Q ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHhhhccC-----CCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhh
Q 038597 5 STVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDAA-----DGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEE 78 (161)
Q Consensus 5 ~~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~~-----~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~ 78 (161)
++|+|+|+||++|.|++.+|++|++|++|+++.|. .++|||| |++.+|++|++||+ ||+.++.+. .
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~--~h~~~~~~~------~ 72 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT--YKVRYTNSS------T 72 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHH--HHHHHHSCC------S
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHH--HccccCCCc------c
Confidence 47999999999999999999999999999997542 2589999 99999999999999 998654321 2
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhhccCCc
Q 038597 79 EEEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 110 (161)
Q Consensus 79 ~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I 110 (161)
.+++| +++++.||+|+.|||||+|
T Consensus 73 ~i~~w--------~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 73 EIPEF--------PIAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCCCC--------CCCTTTHHHHHHHHHHHTC
T ss_pred cCCCc--------ccCHHHHHHHHHHHHHhCc
Confidence 34443 6889999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.86 E-value=2.6e-22 Score=136.37 Aligned_cols=89 Identities=30% Similarity=0.450 Sum_probs=74.7
Q ss_pred eEEEEeCCCCEEEecHHHHHHHHHHHHHhhhcc-----CCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhh
Q 038597 6 TVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDDA-----ADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEE 79 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~~-----~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~ 79 (161)
+|+|+|+||++|.|++.+|.+|++|++|+++.| ...+|||| |++.+|++|++||+ ||+.++..+ ..
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~--~h~~~~~~~------~~ 74 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT--YKVRYTNSS------TE 74 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHH--HHHHHTTCC------SC
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHH--HhcccCCCc------CC
Confidence 699999999999999999999999999998753 25789999 99999999999999 998765321 23
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhhccCCc
Q 038597 80 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 110 (161)
Q Consensus 80 ~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I 110 (161)
+++| +++++.+++|+.||+||+.
T Consensus 75 i~~~--------~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 75 IPEF--------PIAPEIALELLMAANFLDC 97 (97)
T ss_dssp CCCC--------CCCGGGHHHHHHHHHHHTC
T ss_pred CCcC--------cCCHHHHHHHHHHHhhhCC
Confidence 4443 5889999999999999983
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.07 E-value=2e-10 Score=81.39 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=73.0
Q ss_pred eEEEEeCCCCEEEecHHH-HHHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHH
Q 038597 6 TVKLRSGDNEVFEVEKQV-MIQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEW 83 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~-a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~w 83 (161)
.++|+. +|+.|.+++.+ +..|++++.|+... ....|.++ ++..+++.+++|++ ...
T Consensus 27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~-~~~~i~l~~~~~~~f~~lL~fiY--tg~------------------ 84 (135)
T 2yy9_A 27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDG-TGGSVVLPAGFAEIFGLLLDFFY--TGH------------------ 84 (135)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHH--HSC------------------
T ss_pred ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCC-CCCeEEeCCCCHHHHHHHHHHHh--CCC------------------
Confidence 567775 68999999998 56799999999754 25779999 99999999999999 411
Q ss_pred HHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCH
Q 038597 84 EKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTP 130 (161)
Q Consensus 84 d~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~ 130 (161)
+.++.+.+.+|+.||++|+|+.|.+.|++++...+.|+++
T Consensus 85 -------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~ 124 (135)
T 2yy9_A 85 -------LALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQ 124 (135)
T ss_dssp -------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC--------
T ss_pred -------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCC
Confidence 2455667999999999999999999999999998888765
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.99 E-value=2.9e-09 Score=72.20 Aligned_cols=93 Identities=17% Similarity=0.253 Sum_probs=76.1
Q ss_pred CeEEEEeCCC---CEEEecHHHH-HHHHHHHHHhhhcc--CCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchh
Q 038597 5 STVKLRSGDN---EVFEVEKQVM-IQSGTIRNMIEDDA--ADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEE 77 (161)
Q Consensus 5 ~~i~l~s~Dg---~~~~v~~~~a-~~S~~l~~~~~~~~--~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~ 77 (161)
..++|+..+| +.|.+++.++ ..|++++.|+.+.- ....|.++ ++..+++.+++|++ . +.
T Consensus 9 ~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iY--t---~~--------- 74 (109)
T 2vkp_A 9 ADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMY--S---DE--------- 74 (109)
T ss_dssp CCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHH--H---CC---------
T ss_pred ccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHc--C---CC---------
Confidence 4688888886 9999999995 58999999997531 12789999 99999999999999 4 11
Q ss_pred hhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 038597 78 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADI 124 (161)
Q Consensus 78 ~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~ 124 (161)
+.++.+.+.+|+.+|++|+++.|.+.|..++...
T Consensus 75 -------------~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 75 -------------IDLEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp -------------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------ccCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 2345567899999999999999999999998764
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.91 E-value=9e-09 Score=71.31 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=76.1
Q ss_pred CeEEEEeCCCCEEEecHHH-HHHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHH
Q 038597 5 STVKLRSGDNEVFEVEKQV-MIQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEE 82 (161)
Q Consensus 5 ~~i~l~s~Dg~~~~v~~~~-a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~ 82 (161)
..++|+. +|+.|.+++.+ +..|++++.|+.+ ....|.++ ++..+++.+++|++ . +.
T Consensus 29 ~Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~--~~~~i~l~~~~~~~f~~ll~~~Y--t---g~-------------- 86 (121)
T 1buo_A 29 CDVVIMV-DSQEFHAHRTVLACTSKMFEILFHR--NSQHYTLDFLSPKTFQQILEYAY--T---AT-------------- 86 (121)
T ss_dssp CCEEEEE-SSCEEEECHHHHHHHCHHHHHHTTS--CCSEEEECSSCHHHHHHHHHHHH--H---SC--------------
T ss_pred CCEEEEE-CCEEEehhHHHHhhcCHHHHHHHcC--CCcEEEeCCCCHHHHHHHHHhhc--C---CC--------------
Confidence 3577776 58999999999 4689999999975 35679999 99999999999999 4 11
Q ss_pred HHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Q 038597 83 WEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIV 125 (161)
Q Consensus 83 wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i 125 (161)
+.++.+.+.+|+.||++|++++|.+.|+.++...|
T Consensus 87 --------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 87 --------LQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp --------CCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred --------cCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 23456678999999999999999999999987654
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.87 E-value=1.5e-08 Score=69.99 Aligned_cols=87 Identities=17% Similarity=0.250 Sum_probs=73.0
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEW 83 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~w 83 (161)
.++|+. +|+.|.+++.++ ..|++++.|+.+ ....|.++ ++..+++.+++|++ . +.
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~--~~~~i~l~~~~~~~f~~ll~~~Y--t---g~--------------- 85 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVD--QKDVVHLDISNAAGLGQVLEFMY--T---AK--------------- 85 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHH--CCSGGGGGGCCHHHHHHHHHHHH--H---SC---------------
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcC--CCCEEEeCCCCHHHHHHHHHHHc--C---CC---------------
Confidence 577775 689999999994 679999999986 35678999 99999999999999 4 11
Q ss_pred HHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHH
Q 038597 84 EKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAA 122 (161)
Q Consensus 84 d~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia 122 (161)
+.++.+.+.+|+.||++|+++.|.+.|+.+++
T Consensus 86 -------~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 86 -------LSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp -------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 23455678999999999999999999998874
No 13
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.86 E-value=8.4e-09 Score=71.33 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=72.9
Q ss_pred eEEEEeCCCCEEEecHHH-HHHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHH
Q 038597 6 TVKLRSGDNEVFEVEKQV-MIQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEW 83 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~-a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~w 83 (161)
.++|+. +|+.|.+++.+ +..|++++.|+... ....|.++ ++..+++.+++|++ . +.
T Consensus 26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~f~~ll~~iY--t---g~--------------- 83 (119)
T 3b84_A 26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDG-SGGSVVLPAGFAEIFGLLLDFFY--T---GH--------------- 83 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTT-TCCCEEECGGGHHHHHHHHHHHH--H---SC---------------
T ss_pred ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCC-CCCeEEeCCCCHHHHHHHHHHHc--C---CC---------------
Confidence 567765 68999999999 46799999999864 36789999 99999999999999 4 11
Q ss_pred HHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 038597 84 EKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123 (161)
Q Consensus 84 d~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 123 (161)
+.++.+.+.+|+.||++|+++.|.+.|+.++..
T Consensus 84 -------~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 84 -------LALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp -------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred -------CccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 234556688999999999999999999987643
No 14
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.85 E-value=2.3e-08 Score=72.76 Aligned_cols=101 Identities=13% Similarity=0.168 Sum_probs=81.4
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhc---cCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDD---AADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEE 80 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~---~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~ 80 (161)
.++|+. +|+.|.+++.++ ..|++++.|+... +....|.++ ++..+++.+++|++ ...
T Consensus 36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Y--t~~--------------- 97 (172)
T 3htm_A 36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY--TGK--------------- 97 (172)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHH--HSC---------------
T ss_pred ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHh--CCC---------------
Confidence 577776 689999999995 6799999999853 234689999 99999999999999 411
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHH
Q 038597 81 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIR 134 (161)
Q Consensus 81 ~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir 134 (161)
+.++.+.+.+|+.+|++|+++.|.+.|..++...+...+.-++.
T Consensus 98 ----------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~ 141 (172)
T 3htm_A 98 ----------APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 141 (172)
T ss_dssp ----------CTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHH
T ss_pred ----------CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 12345567899999999999999999999998877777665554
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.84 E-value=2.4e-08 Score=68.81 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=72.8
Q ss_pred CeEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhc---cCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhh
Q 038597 5 STVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDD---AADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEE 79 (161)
Q Consensus 5 ~~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~---~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~ 79 (161)
..++|+. +|+.|.+++.++ ..|++++.|+.+. +....|.++ ++..+++.+++|++ . +.
T Consensus 26 ~Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Y--t---~~----------- 88 (120)
T 2if5_A 26 CDVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAY--T---AT----------- 88 (120)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHH--H---SC-----------
T ss_pred CCeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHc--C---CC-----------
Confidence 3577776 589999999995 5799999999854 235679999 99999999999999 4 11
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHH
Q 038597 80 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLA 121 (161)
Q Consensus 80 ~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 121 (161)
+.++.+.+.+|+.||++|++++|.+.|..++
T Consensus 89 -----------~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 89 -----------LTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp -----------CCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 2345667899999999999999999999875
No 16
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.78 E-value=4.7e-08 Score=68.05 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=74.2
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhcc--CCCcccc-c-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDA--ADGEIPL-Q-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEE 80 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~--~~~~I~l-~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~ 80 (161)
.++|+. +|+.|.+++.++ ..|++++.|+.... ....|.+ + ++..+++.+++|++ . +.
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Y--t---g~------------ 92 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMY--T---SR------------ 92 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHH--H---SC------------
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHc--C---CC------------
Confidence 577776 589999999995 68999999998542 3467899 7 99999999999999 4 11
Q ss_pred HHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 038597 81 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123 (161)
Q Consensus 81 ~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 123 (161)
+.++.+.+.+|+.||++|+++.|.+.|..++..
T Consensus 93 ----------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 93 ----------LNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp ----------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 234566789999999999999999999988753
No 17
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.76 E-value=2.7e-08 Score=71.20 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=72.3
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhc-----cCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhh
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDD-----AADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEE 78 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~-----~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~ 78 (161)
.++|+. +|+.|.+.+.++ ..|++++.|+... +....|.++ ++..+++.+++|++ . +.
T Consensus 49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiY--t---g~---------- 112 (144)
T 2ppi_A 49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIF--S---GQ---------- 112 (144)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHT--T---SC----------
T ss_pred ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHh--C---CC----------
Confidence 567766 689999999995 5799999999763 235679999 99999999999999 3 11
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHH
Q 038597 79 EEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLA 121 (161)
Q Consensus 79 ~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 121 (161)
+.++.+.+.+|+.||++|++++|.+.|+.++
T Consensus 113 ------------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 113 ------------IRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp ------------CCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred ------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 2345667899999999999999999998754
No 18
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.74 E-value=7.4e-08 Score=66.03 Aligned_cols=88 Identities=11% Similarity=0.162 Sum_probs=71.2
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhccCCCc--cccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDAADGE--IPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEE 81 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~~~~~--I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~ 81 (161)
.++|+. +|+.|.+++.++ ..|++++.|+.+.+ ... |+++ ++..+++.+++|++ . +.
T Consensus 24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~~~f~~ll~~~Y--t---~~------------- 83 (116)
T 2vpk_A 24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRSTS-ENNVFLDQSQVKADGFQKLLEFIY--T---GT------------- 83 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCC-CSCEECCTTTCCHHHHHHHHHHHH--H---SC-------------
T ss_pred cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCCC-CCeEEeecCCCCHHHHHHHHHHHc--C---CC-------------
Confidence 567766 589999999994 68999999998652 333 5566 99999999999999 4 11
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHH
Q 038597 82 EWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAA 122 (161)
Q Consensus 82 ~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia 122 (161)
+.++.+.+.+|+.||++|+++.|.+.|+.++.
T Consensus 84 ---------~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 84 ---------LNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp ---------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred ---------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 23456678999999999999999999998863
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.74 E-value=1.5e-08 Score=71.79 Aligned_cols=98 Identities=11% Similarity=0.154 Sum_probs=72.2
Q ss_pred CeEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhcc---CCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhh
Q 038597 5 STVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDA---ADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEE 79 (161)
Q Consensus 5 ~~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~---~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~ 79 (161)
..++|+. +|+.|.+++.++ ..|++++.|+.+.- ....|.++ ++..+++.+++|++ ...
T Consensus 26 ~Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y--~~~-------------- 88 (145)
T 4eoz_A 26 TDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY--TGK-------------- 88 (145)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHH--HSC--------------
T ss_pred cceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhc--cCc--------------
Confidence 3577776 688999999995 67999999997531 24679999 99999999999999 411
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCH
Q 038597 80 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTP 130 (161)
Q Consensus 80 ~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~ 130 (161)
+.++.+.+.+|+.+|++|+++.|.+.|..++...+...+.
T Consensus 89 -----------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 128 (145)
T 4eoz_A 89 -----------APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 128 (145)
T ss_dssp -----------CTTGGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred -----------cCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence 1234556789999999999999999999998876655443
No 20
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.65 E-value=2.7e-08 Score=69.61 Aligned_cols=89 Identities=15% Similarity=0.347 Sum_probs=69.1
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhccCCCccccc--ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPLQ--ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEE 82 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~--v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~ 82 (161)
.++|+. +|+.|.+++.++ ..|++++.|+... ....|.++ ++..+++.+++|++ .-.
T Consensus 35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iY--tg~----------------- 93 (129)
T 3ga1_A 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCY--TGR----------------- 93 (129)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHH--HSE-----------------
T ss_pred ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHh--CCc-----------------
Confidence 567776 699999999994 5799999999875 56778884 99999999999999 411
Q ss_pred HHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 038597 83 WEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123 (161)
Q Consensus 83 wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 123 (161)
+.++.+.+.+|+.||++|+|+.|.+.|+.++..
T Consensus 94 --------~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 94 --------LSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp --------EECCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred --------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666789999999999999999999988754
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.64 E-value=5.6e-08 Score=68.81 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=75.7
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhcc-CCCcccc-c-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDA-ADGEIPL-Q-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEE 81 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~-~~~~I~l-~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~ 81 (161)
.++|+. +|+.|.+++.++ ..|++++.|+.+.. ....|.+ . ++...++.+++|++ . +.
T Consensus 38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Y--t---g~------------- 98 (138)
T 2z8h_A 38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAY--T---AK------------- 98 (138)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHH--H---SC-------------
T ss_pred CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhc--C---CC-------------
Confidence 567766 589999999995 67999999998642 3356778 4 99999999999999 4 11
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcC
Q 038597 82 EWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKG 127 (161)
Q Consensus 82 ~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~g 127 (161)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+..
T Consensus 99 ---------~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 99 ---------LILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp ---------CCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred ---------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 2355667899999999999999999999998765543
No 22
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.59 E-value=8.9e-08 Score=74.23 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=63.2
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhc-----cCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhh
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDD-----AADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEE 78 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~-----~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~ 78 (161)
.++|+. +|+.|.+++.++ ..|++++.|+.+. +....|+++ ++..+++.+++|++ .-.
T Consensus 33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Y--t~~------------- 96 (256)
T 3hve_A 33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIF--SGQ------------- 96 (256)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHH--HSC-------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhcc--CCC-------------
Confidence 567765 689999999995 4699999999753 134679999 99999999999999 411
Q ss_pred hHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcC
Q 038597 79 EEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKG 127 (161)
Q Consensus 79 ~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~g 127 (161)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+.-
T Consensus 97 ------------~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~ 133 (256)
T 3hve_A 97 ------------IRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAA 133 (256)
T ss_dssp ------------CCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCS
T ss_pred ------------CcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCH
Confidence 1233344556666666666666666666655554433
No 23
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.55 E-value=4.6e-07 Score=72.05 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=80.8
Q ss_pred CeEEEEeCCCCEEEecHHH-HHHHHHHHHHhhhc---cCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhh
Q 038597 5 STVKLRSGDNEVFEVEKQV-MIQSGTIRNMIEDD---AADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEE 79 (161)
Q Consensus 5 ~~i~l~s~Dg~~~~v~~~~-a~~S~~l~~~~~~~---~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~ 79 (161)
..++|.. +|+.|.+++.+ +..|++++.|+.+. +....|.++ ++..+++.+++|++ . +.
T Consensus 175 ~Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY--t---~~----------- 237 (312)
T 3hqi_A 175 TDCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY--T---GK----------- 237 (312)
T ss_dssp CCEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHH--H---SC-----------
T ss_pred CceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhc--C---CC-----------
Confidence 3567766 68999999999 56799999999753 245789999 99999999999999 4 21
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHH
Q 038597 80 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIR 134 (161)
Q Consensus 80 ~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir 134 (161)
+.++.+.+.+|+.||++|+++.|...|...+...+...+.-++.
T Consensus 238 -----------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l 281 (312)
T 3hqi_A 238 -----------APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 281 (312)
T ss_dssp -----------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHH
T ss_pred -----------CCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 12234678899999999999999999999998777666655543
No 24
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.50 E-value=6.6e-08 Score=67.09 Aligned_cols=84 Identities=15% Similarity=0.088 Sum_probs=68.5
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEW 83 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~w 83 (161)
.++|+. +|+.|.+++.++ ..|++++. ....|.++ |+..+++.+++|++ . ..
T Consensus 32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiY--t---g~--------------- 84 (119)
T 3m5b_A 32 DTLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVY--G---ES--------------- 84 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHT--T---CC---------------
T ss_pred ceEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHc--C---CC---------------
Confidence 467776 699999999995 56998874 24678999 99999999999999 3 11
Q ss_pred HHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 038597 84 EKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123 (161)
Q Consensus 84 d~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 123 (161)
+.++.+.+.+|+.||++|+|+.|.+.|++++.+
T Consensus 85 -------~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 85 -------VELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp -------EEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred -------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 346677899999999999999999999988754
No 25
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.49 E-value=1.9e-07 Score=73.28 Aligned_cols=102 Identities=12% Similarity=0.164 Sum_probs=74.3
Q ss_pred CeEEEEeC--CCCEEEecHHHH-HHHHHHHHHhhhc---cCCCcccc-------cccHHHHHHHHHHhhcccccCCCCCC
Q 038597 5 STVKLRSG--DNEVFEVEKQVM-IQSGTIRNMIEDD---AADGEIPL-------QISSRNLAKVVEWCKCMQHRDRNNNN 71 (161)
Q Consensus 5 ~~i~l~s~--Dg~~~~v~~~~a-~~S~~l~~~~~~~---~~~~~I~l-------~v~s~~L~~Ii~y~~~~~h~~~~~~~ 71 (161)
..++|+.. ||+.|.+++.++ ..|++++.|+.+. +....|.+ .++..+++.+++|++ .-.
T Consensus 33 ~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Y--tg~------ 104 (279)
T 3i3n_A 33 CDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMY--TGR------ 104 (279)
T ss_dssp CCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHH--HSE------
T ss_pred CCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhC--cCC------
Confidence 35778776 799999999995 5799999999753 22356666 389999999999999 411
Q ss_pred CCcchhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHH
Q 038597 72 DNKEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEI 133 (161)
Q Consensus 72 ~~~~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eei 133 (161)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+
T Consensus 105 -------------------~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 105 -------------------IRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp -------------------EEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred -------------------cccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 2344566888889999999999999988888877766654444
No 26
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=98.47 E-value=3.7e-08 Score=68.40 Aligned_cols=87 Identities=13% Similarity=0.213 Sum_probs=70.4
Q ss_pred eEEEEeCCCCEEEecHHH-HHHHHHHHHHhhhcc-CCCccccc--ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHH
Q 038597 6 TVKLRSGDNEVFEVEKQV-MIQSGTIRNMIEDDA-ADGEIPLQ--ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEE 81 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~-a~~S~~l~~~~~~~~-~~~~I~l~--v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~ 81 (161)
.++|+. +|+.|.+++.+ +..|++++.|+.... ....|.++ ++..+++.+++|++ . +.
T Consensus 34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iY--t---g~------------- 94 (125)
T 3ohu_A 34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAY--T---AK------------- 94 (125)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHT--T---SE-------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHc--C---Cc-------------
Confidence 577775 68999999999 467999999998642 34567776 89999999999998 4 11
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHH
Q 038597 82 EWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQL 120 (161)
Q Consensus 82 ~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ 120 (161)
+.++.+.+.+|+.||++|+|+.|.+.|+++
T Consensus 95 ---------~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~ 124 (125)
T 3ohu_A 95 ---------LLLSRENIREVIRCAEFLRMHNLEDSCFSF 124 (125)
T ss_dssp ---------EEECTTTHHHHHHHHHHHTBSSCTTSSCCC
T ss_pred ---------eEECHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 345567789999999999999999988653
No 27
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.47 E-value=5.3e-07 Score=62.00 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=67.3
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhccCCCccccc-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPLQ-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEW 83 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~w 83 (161)
.++|+. +|+.|.+++.++ ..|++++.|+... ...|.++ ++..+++.+++|++ . +.
T Consensus 33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Y--t---g~--------------- 89 (116)
T 3fkc_A 33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIY--S---SK--------------- 89 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHT--T---SC---------------
T ss_pred eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhc--C---CC---------------
Confidence 567775 689999999994 6799999999764 5789999 99999999999998 3 21
Q ss_pred HHhhhhhh-cCChHHHHHHHHhhccCCchHHHH
Q 038597 84 EKKFDEEV-SEDKDLHFGLLLAANYLEIPALLH 115 (161)
Q Consensus 84 d~~F~~~~-~~~~~~l~~Ll~AA~~L~I~~L~~ 115 (161)
+ .++.+.+.+|+.||++|+|++|.+
T Consensus 90 -------~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 90 -------IVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp -------CCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred -------cCCCCHHHHHHHHHHHHHhCccccCc
Confidence 2 366778999999999999999975
No 28
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=98.35 E-value=1.3e-07 Score=65.76 Aligned_cols=88 Identities=13% Similarity=0.220 Sum_probs=70.3
Q ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHhhhcc-CCCcccc-c-ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHH
Q 038597 6 TVKLRSGDNEVFEVEKQVM-IQSGTIRNMIEDDA-ADGEIPL-Q-ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEE 81 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v~~~~a-~~S~~l~~~~~~~~-~~~~I~l-~-v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~ 81 (161)
.++|+. +|+.|.+++.++ ..|++++.|+.+.. ....|.+ . ++...++.+++|++ . +.
T Consensus 31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iY--t---g~------------- 91 (124)
T 2ihc_A 31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAY--T---AK------------- 91 (124)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHH--H---SE-------------
T ss_pred CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhc--C---CC-------------
Confidence 567766 589999999994 67999999998642 3356778 4 99999999999999 4 10
Q ss_pred HHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHH
Q 038597 82 EWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLA 121 (161)
Q Consensus 82 ~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 121 (161)
+.++.+.+.+|+.||++|+++.|.+.|+.++
T Consensus 92 ---------~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 92 ---------LILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp ---------EEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred ---------cccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 2345667999999999999999999998754
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=93.22 E-value=0.94 Score=30.00 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=63.2
Q ss_pred CCeEEEEeCCCCEEEecHHHHHHH--HHHHHHhhhc---c----CCCcccccccHHHHHHHHHHhhcccccCCCCCCCCc
Q 038597 4 TSTVKLRSGDNEVFEVEKQVMIQS--GTIRNMIEDD---A----ADGEIPLQISSRNLAKVVEWCKCMQHRDRNNNNDNK 74 (161)
Q Consensus 4 ~~~i~l~s~Dg~~~~v~~~~a~~S--~~l~~~~~~~---~----~~~~I~l~v~s~~L~~Ii~y~~~~~h~~~~~~~~~~ 74 (161)
++.|+|.-+ |+.|.+....+..- ..|..|+... + ..+.+-+.-++.+++.|+.|++ .-.-. .|.
T Consensus 5 ~~~v~LNVG-G~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr--~g~l~-~p~--- 77 (107)
T 3drz_A 5 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLR--HGKLV-INK--- 77 (107)
T ss_dssp CCEEEEEET-TEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHH--HSCCC-CCT---
T ss_pred CCEEEEEEC-CEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhC--CCeeC-CCC---
Confidence 456666554 99999999987542 4577777532 1 2344555589999999999999 52211 110
Q ss_pred chhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 038597 75 EEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAAD 123 (161)
Q Consensus 75 ~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 123 (161)
++. ...++..|.|.+|.+|+++|-..|.+
T Consensus 78 -----------------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 78 -----------------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp -----------------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----------------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 111 24578899999999999999877754
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=72.31 E-value=6.9 Score=29.06 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCeEEEEeCCCCEEEecHHHHHHH--HHHHHHhhhc---c----CCCcccccccHHHHHHHHHHhhcccccCCCCCCCCc
Q 038597 4 TSTVKLRSGDNEVFEVEKQVMIQS--GTIRNMIEDD---A----ADGEIPLQISSRNLAKVVEWCKCMQHRDRNNNNDNK 74 (161)
Q Consensus 4 ~~~i~l~s~Dg~~~~v~~~~a~~S--~~l~~~~~~~---~----~~~~I~l~v~s~~L~~Ii~y~~~~~h~~~~~~~~~~ 74 (161)
++.|+|--+ |+.|......+..- ..|..|+... + ..+.+=+.-++..++.|+.|++ .-.-. .|.
T Consensus 11 ~~~V~LNVG-G~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLR--tG~L~-lP~--- 83 (202)
T 3drx_A 11 SKWVRLNVG-GTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLR--HGKLV-INK--- 83 (202)
T ss_dssp CCEEEEEET-TEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHH--HSCCC-CCT---
T ss_pred CCEEEEEEC-CEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhc--CCccC-CCC---
Confidence 345666544 99999988876542 3566666432 1 2344545578999999999998 52211 110
Q ss_pred chhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 038597 75 EEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADI 124 (161)
Q Consensus 75 ~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~ 124 (161)
++.. ..|+..|.|.+|.+|+++|-..+..+
T Consensus 84 -----------------~~~~---~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 84 -----------------DLAE---EGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp -----------------TSCH---HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------------CCCH---HHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 1111 35788999999999999998888654
No 31
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=71.00 E-value=4.6 Score=31.60 Aligned_cols=98 Identities=15% Similarity=0.148 Sum_probs=63.6
Q ss_pred cccc-ccHHHHHHHHHHhhcccccCC-CCC-CCC-cchhhhHHHHHHh--hhhhhcCChH--HHHHHHHhhccCCchHHH
Q 038597 43 IPLQ-ISSRNLAKVVEWCKCMQHRDR-NNN-NDN-KEEEEEEEEWEKK--FDEEVSEDKD--LHFGLLLAANYLEIPALL 114 (161)
Q Consensus 43 I~l~-v~s~~L~~Ii~y~~~~~h~~~-~~~-~~~-~~~~~~~~~wd~~--F~~~~~~~~~--~l~~Ll~AA~~L~I~~L~ 114 (161)
..++ -+--.-.-|+.|++ -+--. ..+ ..+ ....+...+|-.. | -.+..+ ..++.+.|..-..+..|+
T Consensus 191 ~Q~~~~d~~~T~NVvAwLY--AAilng~~Wfl~~~~~sv~dfN~WA~~ngf---t~~~~~~~~~~~~Laa~TGVsVe~lL 265 (306)
T 3tnt_A 191 AQAAGTDTTITLNVLAWLY--AAVINGDRWFLNRFTTTLNDFNLVAMKYNY---EPLTQDHVDILGPLSAQTGIAVLDMC 265 (306)
T ss_dssp CCCCCCCCBCHHHHHHHHH--HHHHTTCCTTCCSCCCCHHHHHHHHHHTTB---CCCCHHHHHHTHHHHHHHTCCHHHHH
T ss_pred hhccCccceeehhHHHHHH--HHHhcCCeEEeeccEecHHHHHHHHHhcCC---ccccccHHHHHHHHHHHhCCCHHHHH
Confidence 3444 33344456778877 43321 111 111 1234567888554 4 234544 469999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHhHcCCCCCCCHHHH
Q 038597 115 HRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEE 148 (161)
Q Consensus 115 ~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee 148 (161)
...-+.++.-+.|++ |.-...++++|||+|-
T Consensus 266 ~aI~~ll~~g~~G~~---IlG~~~leDE~Tp~~V 296 (306)
T 3tnt_A 266 AALKELLQNGMNGRT---ILGSTILEDEFTPFDV 296 (306)
T ss_dssp HHHHHHHHHCCTTCC---BTTBSSCCCSCCHHHH
T ss_pred HHHHHHHhcCcCCce---eeccccccccCCHHHH
Confidence 888777777677777 7777889999999774
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=63.26 E-value=9.4 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.446 Sum_probs=27.6
Q ss_pred HHHHHHHcCCCHHHHHhHcC------CC-CCCCHHHHHHHHHh
Q 038597 119 QLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEEAVMDE 154 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~e 154 (161)
..||..+.|.|+.+.|+.+. +. ..||+||.+.+.+-
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~ 67 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Confidence 56788888999999998653 33 36999998877653
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=58.32 E-value=7.9 Score=25.06 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=27.5
Q ss_pred HHHHHHHcCCCHHHHHhHcC------CC-CCCCHHHHHHHHHh
Q 038597 119 QLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEEAVMDE 154 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~e 154 (161)
..||..+.|.|+.+.|+.+. +. ..+|+||.+.+.+-
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 56788888999999998653 22 36999998877653
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=57.96 E-value=16 Score=24.56 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=35.5
Q ss_pred ChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 038597 94 DKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEEAVMD 153 (161)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~ 153 (161)
+.++--.|+.+..-.+... =..||..+.|.|..++|+.+. +. ..+|+||.+.+.+
T Consensus 31 t~eED~~L~~~v~~~g~~~-----W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 31 TKEEDQRVIEHVQKYGPKR-----WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp CHHHHHHHHHHHHHTCSCC-----HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCC-----HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 3444444444444444321 357788889999999998663 33 3699999887765
No 35
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=54.62 E-value=15 Score=20.53 Aligned_cols=36 Identities=28% Similarity=0.493 Sum_probs=27.0
Q ss_pred HHHHHcCC-CHHHHHhHcCCCCCCCHHHHHHHHHhcCCC
Q 038597 121 AADIVKGK-TPEEIRRTFNIKKDFTPEEEEAVMDEHGWA 158 (161)
Q Consensus 121 ia~~i~gk-s~eeir~~f~i~~d~t~eee~~i~~e~~w~ 158 (161)
.-.+..|. +.+++|+.-+- .++|++|-.+|. +++|-
T Consensus 11 ~D~W~~GT~~~~~mR~AV~~-G~iTQ~E~D~I~-~ypwg 47 (51)
T 2xf7_A 11 LDSWLDGTASEELLRVAVNA-GDLTQEEADKIM-SYPWG 47 (51)
T ss_dssp HHHHHHTCCCHHHHHHHHHH-TSSCHHHHHHHH-TSCTT
T ss_pred HHHHhcchhhHHHHHHHHhc-CcccHHHHHHHH-hCccc
Confidence 34567774 78899987663 479999999885 67884
No 36
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=50.54 E-value=26 Score=22.97 Aligned_cols=49 Identities=24% Similarity=0.392 Sum_probs=40.0
Q ss_pred CChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCC--CHHHHHhHcCCCC
Q 038597 93 EDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGK--TPEEIRRTFNIKK 141 (161)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gk--s~eeir~~f~i~~ 141 (161)
++.+..-.|......|..+.+.......+++.-.|+ |.+|+++.+|+..
T Consensus 47 ~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 47 VGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred ecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 455666667777777888889999988888888886 8999999999975
No 37
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=50.53 E-value=9.6 Score=25.48 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=39.0
Q ss_pred CCCCCeEEEEeCCCCEEEecHHHHHH--HHHHHHHhhhcc----CCCcccccccHHHHHHHHHHhh
Q 038597 1 MATTSTVKLRSGDNEVFEVEKQVMIQ--SGTIRNMIEDDA----ADGEIPLQISSRNLAKVVEWCK 60 (161)
Q Consensus 1 m~~~~~i~l~s~Dg~~~~v~~~~a~~--S~~l~~~~~~~~----~~~~I~l~v~s~~L~~Ii~y~~ 60 (161)
|+++..|+|--+ |+.|......+.. ...|..|+.... ..+.+=+.=++..++.|+.|++
T Consensus 1 m~~~~~V~LNVG-G~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~FiDRdp~~F~~ILnylR 65 (115)
T 3kvt_A 1 MDAENRVIINVG-GIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFFDRHPGVFAQIINYYR 65 (115)
T ss_dssp ---CCEEEEEET-TEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEECSCTTTHHHHHHHHH
T ss_pred CCCCCEEEEEEC-CEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEEecChHHHHHHHHHhc
Confidence 888888888765 9999999988754 223445544211 2344545568999999999998
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=49.45 E-value=21 Score=23.92 Aligned_cols=36 Identities=17% Similarity=0.375 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCCHHHHHhHcC------CCC-CCCHHHHHHHHH
Q 038597 118 CQLAADIVKGKTPEEIRRTFN------IKK-DFTPEEEEAVMD 153 (161)
Q Consensus 118 ~~~ia~~i~gks~eeir~~f~------i~~-d~t~eee~~i~~ 153 (161)
=..||..+.|.|+.+.|+.+. +.. .+|+||.+.+.+
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 467788888999999998643 333 699999887765
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=49.01 E-value=4.2 Score=25.32 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=26.9
Q ss_pred ChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCC
Q 038597 94 DKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIK 140 (161)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~ 140 (161)
..+.+|+-..|..--+-+.-. ..||..+-|||++|+++.+.++
T Consensus 26 eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~ 68 (74)
T 4eef_G 26 SENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELE 68 (74)
T ss_dssp THHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC--
T ss_pred HHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHh
Confidence 345566665555433332222 4677788899999999998875
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=48.79 E-value=11 Score=23.27 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCHHHHHhHcC
Q 038597 119 QLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f~ 138 (161)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888899999999987553
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=46.78 E-value=10 Score=25.72 Aligned_cols=35 Identities=23% Similarity=0.561 Sum_probs=26.3
Q ss_pred HHHHHHHcCCCHHHHHhHc------CCCC-CCCHHHHHHHHH
Q 038597 119 QLAADIVKGKTPEEIRRTF------NIKK-DFTPEEEEAVMD 153 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f------~i~~-d~t~eee~~i~~ 153 (161)
..||..+.|.|+.+.|+.+ ++.. .+|+||.+.|.+
T Consensus 26 ~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 26 PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 3566777799999999866 3443 699999887765
No 42
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=46.21 E-value=14 Score=22.59 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=14.5
Q ss_pred HHHHHHHcCCCHHHHHhHcC
Q 038597 119 QLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f~ 138 (161)
..||..+ |+|++|+++.+.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 4566666 899999998764
No 43
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=46.06 E-value=57 Score=21.00 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=44.2
Q ss_pred ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHH-HHHHHHHH
Q 038597 47 ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRL-CQLAADIV 125 (161)
Q Consensus 47 v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~-~~~ia~~i 125 (161)
+....+.+|++|+. .|...+. .+.+.-.. ++++...|..++... -+....++... ......++
T Consensus 4 ~~~~~~~~~~~~i~--~~~~~~~---------~~~~lA~~----~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL 67 (120)
T 3mkl_A 4 LQPNMRTRVCTVIN--NNIAHEW---------TLARIASE----LLMSPSLLKKKLREE-ETSYSQLLTECRMQRALQLI 67 (120)
T ss_dssp -CCCHHHHHHHHHH--TSTTSCC---------CHHHHHHH----TTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH--HhccCCC---------CHHHHHHH----HCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 34567899999999 8766532 23333223 467777777777663 33333333332 23333344
Q ss_pred c--CCCHHHHHhHcCCCC
Q 038597 126 K--GKTPEEIRRTFNIKK 141 (161)
Q Consensus 126 ~--gks~eeir~~f~i~~ 141 (161)
. +.++.+|-..+|..+
T Consensus 68 ~~~~~si~eIA~~~Gf~~ 85 (120)
T 3mkl_A 68 VIHGFSIKRVAVSCGYHS 85 (120)
T ss_dssp TSTTCCHHHHHHHTTCSC
T ss_pred HcCCCCHHHHHHHHCCCC
Confidence 3 467777777666553
No 44
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=45.16 E-value=4.4 Score=19.88 Aligned_cols=12 Identities=58% Similarity=0.537 Sum_probs=9.6
Q ss_pred HHHHHHhhccCC
Q 038597 98 HFGLLLAANYLE 109 (161)
Q Consensus 98 l~~Ll~AA~~L~ 109 (161)
+.-|+.||.||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456889999985
No 45
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=45.04 E-value=26 Score=23.97 Aligned_cols=47 Identities=6% Similarity=-0.094 Sum_probs=35.6
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcC
Q 038597 80 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKG 127 (161)
Q Consensus 80 ~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~g 127 (161)
+...-.+|+.+ .++.+..++++..|...+.+.|.+.|..+|+..+..
T Consensus 120 l~~~c~~~l~~-~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~~ 166 (172)
T 3htm_A 120 LKVMCEDALCS-NLSVENAAEILILADLHSADQLKTQAVDFINYHATD 166 (172)
T ss_dssp HHHHHHHHHHH-TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 34444456321 378889999999999999999999999999876543
No 46
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=44.48 E-value=16 Score=23.69 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=25.9
Q ss_pred ChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcC
Q 038597 94 DKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~ 138 (161)
..+.=-.||.+..-.+-.. -...++|..+.++|++|++.+|.
T Consensus 37 TRe~DR~IL~~cQ~~G~s~---~tFa~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 37 TREADRVILTMCQEQGAQP---HTFSVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp CHHHHHHHHHHHHHTTSCT---TTHHHHHHHHSSCCHHHHHHHHH
T ss_pred ccccCHHHHHHHHhcCCCh---hHHHHHHHHHccCCHHHHHHHHH
Confidence 4444445555554443310 12345888999999999999884
No 47
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=43.68 E-value=26 Score=27.36 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=46.6
Q ss_pred hhhHHHHHHh--hhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCCCHHHH
Q 038597 77 EEEEEEWEKK--FDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEE 148 (161)
Q Consensus 77 ~~~~~~wd~~--F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee 148 (161)
.+...+|-.. | -.......++.+.|..-..+..|+...- .++.-+.|+ .|.-...++++|||++-
T Consensus 233 ~e~fN~WA~~ngf---t~~~~~~~~~~Laa~TGVsVe~lL~aI~-~L~~gf~G~---~IlG~~~leDE~Tp~~V 299 (309)
T 2q6f_A 233 IEDYNRWASDNGF---TPFSTSTAITKLSAITGVDVCKLLRTIM-VKSAQWGSD---PILGQYNFEDELTPESV 299 (309)
T ss_dssp HHHHHHHHHHHTB---CCCCCCHHHHHHHHHHTCCHHHHHHHHH-HHHHCCCSC---CBTTBSSCCCSCCHHHH
T ss_pred HHHHHHHHHhCCC---cccchhhHHHHHHHHhCCcHHHHHHHHH-HHhcCCCCc---eecccccccccCCHHHH
Confidence 4567788544 5 3466679999999999999998887654 444444455 45566678899999874
No 48
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=38.80 E-value=14 Score=23.68 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=16.5
Q ss_pred CCCHHHHHhHcCCCCCCC
Q 038597 127 GKTPEEIRRTFNIKKDFT 144 (161)
Q Consensus 127 gks~eeir~~f~i~~d~t 144 (161)
|.|++|=|+.||++.|+.
T Consensus 43 gltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 43 SMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp CSCHHHHHHHTTCGGGCC
T ss_pred CCCHHHHHHHhCCCCCCc
Confidence 899999999999998864
No 49
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=38.56 E-value=33 Score=23.08 Aligned_cols=87 Identities=8% Similarity=0.048 Sum_probs=53.2
Q ss_pred CeEEEEeCCCCEEEecHHHHHHHHHHHHHhhhc-------cCCCcccccccHHHHHHHHHHhhcccccCCCCCCCCcchh
Q 038597 5 STVKLRSGDNEVFEVEKQVMIQSGTIRNMIEDD-------AADGEIPLQISSRNLAKVVEWCKCMQHRDRNNNNDNKEEE 77 (161)
Q Consensus 5 ~~i~l~s~Dg~~~~v~~~~a~~S~~l~~~~~~~-------~~~~~I~l~v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~ 77 (161)
..|+|- -.|+.|.+....+..-+ ..++... ...+.+-+.=++..++.|+.|++ .-+- ..|.
T Consensus 13 ~~V~LN-VGG~~F~t~~~TL~~~p--~S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILnflR--~G~l-~~p~------ 80 (124)
T 1s1g_A 13 ELIVLN-VSGRRFQTWRTTLERYP--DTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR--TGKL-HYPR------ 80 (124)
T ss_dssp CEEEEE-ETTEEEEEEHHHHTTST--TSSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHHHHH--HSCB-CCCT------
T ss_pred CEEEEE-eCCEEEEEeHHHHhcCC--CceecccCCcccccCCCCcEEEcCChHHHHHHHHHHh--cCCC-CCCC------
Confidence 345543 34999999998864311 0112111 12344555578999999999998 4111 1100
Q ss_pred hhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHH-HHHHHHH
Q 038597 78 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPAL-LHRLCQL 120 (161)
Q Consensus 78 ~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L-~~l~~~~ 120 (161)
++ .+..|+..|.|.+|.+| ++.||..
T Consensus 81 --------------~~---~~~~l~~Ea~fy~i~~l~l~~cC~~ 107 (124)
T 1s1g_A 81 --------------YE---CISAYDDELAFYGILPEIIGDCCYE 107 (124)
T ss_dssp --------------TS---CHHHHHHHHHHTTCCGGGBCHHHHH
T ss_pred --------------Cc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 11 25678899999999998 5888853
No 50
>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease, exonuclease, helic hydrolase, membrane, metal-binding, nuclease; HET: 3IH; 2.50A {Human coronavirus}
Probab=37.62 E-value=28 Score=27.10 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=62.2
Q ss_pred Cccccc-ccHHHHHHHHHHhhcccccCC-CCCCCC--cchhhhHHHHHHh--hhhhhcCChHHHHHHHHhhccCCchHHH
Q 038597 41 GEIPLQ-ISSRNLAKVVEWCKCMQHRDR-NNNNDN--KEEEEEEEEWEKK--FDEEVSEDKDLHFGLLLAANYLEIPALL 114 (161)
Q Consensus 41 ~~I~l~-v~s~~L~~Ii~y~~~~~h~~~-~~~~~~--~~~~~~~~~wd~~--F~~~~~~~~~~l~~Ll~AA~~L~I~~L~ 114 (161)
+...++ -+--.-.-|+.|++ -+--. +.+=.. ....+...+|-.. | -.+.....++.+.|..-..+..|+
T Consensus 191 ~~~Q~~~~d~~~T~NVvA~LY--AAilng~~Wf~~~~~~s~~~fN~WA~~ngf---t~~~~~~~~~~Laa~TgVsVe~lL 265 (302)
T 3d23_B 191 QVVQLPVKDYVQTVNVIAWLY--AAILNNCAWFVQNDVCSTEDFNVWAMANGF---SQVKADLVLDALASMTGVSIETLL 265 (302)
T ss_dssp SSCCCCCCCCBCHHHHHHHHH--HHHHTTCCTTCCSCCCCHHHHHHHHHHHTB---CCCCCCHHHHHHHHHHSCCHHHHH
T ss_pred hhhhccCccceeehhHHHHHH--HHHHcCCceeeccceecHHHHHHHHHhCCc---ccccchhHHHHHHHHhCCcHHHHH
Confidence 334444 44444556788887 44322 222111 1234667888544 5 346667789999999999999988
Q ss_pred HHHHHHHHHHHcCCCHHHHHhHcCCCCCCCHHHH
Q 038597 115 HRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEE 148 (161)
Q Consensus 115 ~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee 148 (161)
...-+. + .|..-..|.-...++++|||++-
T Consensus 266 aaI~~L-~---~gf~G~~IlG~~~leDE~Tp~~V 295 (302)
T 3d23_B 266 AAIKRL-Y---MGFQGRQILGSCTFEDELAPSDV 295 (302)
T ss_dssp HHHHHH-H---TCCTTCCBTTBSSCCCSSCHHHH
T ss_pred HHHHHH-h---cCCCCceeeccccccccCCHHHH
Confidence 655433 3 44444456667789999999875
No 51
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=37.22 E-value=34 Score=23.45 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=25.1
Q ss_pred HHHhhccCCchHHHH-HHHHHHHHHHcCCCHHHHHhHc
Q 038597 101 LLLAANYLEIPALLH-RLCQLAADIVKGKTPEEIRRTF 137 (161)
Q Consensus 101 Ll~AA~~L~I~~L~~-l~~~~ia~~i~gks~eeir~~f 137 (161)
.+..+.|-+-=.-+. .++..++++++|||++|.++..
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 53 TIADIRFQGQGCAISTASASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp EEEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 455555555443344 4456678899999999998865
No 52
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=36.57 E-value=32 Score=23.89 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 038597 119 QLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEEAVMD 153 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~ 153 (161)
..||..+.|.|..++|..+. +. ..+|+||.+.+.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 56788889999999998653 33 3699999877765
No 53
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.49 E-value=24 Score=22.69 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=36.7
Q ss_pred cCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHc---------CCCHHHHHhHcC
Q 038597 92 SEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVK---------GKTPEEIRRTFN 138 (161)
Q Consensus 92 ~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~---------gks~eeir~~f~ 138 (161)
+++++..+.++..|..++.+.|.+.|-+++...+. .-+.+++..++.
T Consensus 7 ~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 7 GVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 36888899999999999999999999988865432 235666666655
No 54
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=36.40 E-value=32 Score=23.29 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=25.5
Q ss_pred HHHhhccCCchHH-HHHHHHHHHHHHcCCCHHHHHhHcC
Q 038597 101 LLLAANYLEIPAL-LHRLCQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 101 Ll~AA~~L~I~~L-~~l~~~~ia~~i~gks~eeir~~f~ 138 (161)
.+..+.|-+-=.- .-.++..++++++|||++|.+++.+
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 53 IIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4555555554433 3444567788999999999987543
No 55
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=36.01 E-value=18 Score=28.24 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred ccccc-ccHHHHHHHHHHhhcccccCCC-CC-CCC-cchhhhHHHHHHh--hhhhhcCChHHHHHHHHhhccCCchHHHH
Q 038597 42 EIPLQ-ISSRNLAKVVEWCKCMQHRDRN-NN-NDN-KEEEEEEEEWEKK--FDEEVSEDKDLHFGLLLAANYLEIPALLH 115 (161)
Q Consensus 42 ~I~l~-v~s~~L~~Ii~y~~~~~h~~~~-~~-~~~-~~~~~~~~~wd~~--F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~ 115 (161)
...++ -+--+-.-|+.|++ -+--+. ++ ..+ .-..+...+|-.. | -.+.....++++.|..-.++..|+.
T Consensus 190 v~Q~~~~d~~~T~NVvAwLY--AAilng~~wfl~~~~~sv~dfN~WA~~ngf---t~~~~~~~~~~Laa~TGVsV~~lL~ 264 (303)
T 3tlo_A 190 SLQVESANLMLSDNVVAFLY--AALLNGCRWWLCSTRVNVDGFNEWAMANGY---TSVSSVECYSILAAKTGVSVEQLLA 264 (303)
T ss_dssp CCCCCCCCCBCHHHHHHHHH--HHHHTTCCTTCCCCCCCHHHHHHHHHHHTB---CCCCCSGGGHHHHHHHTCCHHHHHH
T ss_pred hhcccCccceeehhHHHHHH--HHHHcCCCeeeccceecHHHHHHHHHhcCc---cccccchHHHHHHHHhCCcHHHHHH
Confidence 33444 34444456788887 443321 11 111 1234567888443 5 3455667899999999999999887
Q ss_pred HHHHHHHHHHcCCCHHHHHhHcCCCCCCCHHHH
Q 038597 116 RLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEE 148 (161)
Q Consensus 116 l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee 148 (161)
..-+ ++ .|..-..|.-...++++|||+|-
T Consensus 265 aI~~-L~---~g~~G~~IlG~~~leDE~Tp~~V 293 (303)
T 3tlo_A 265 SIQH-LH---EGFGGKNILGYSSLCDEFTLAEV 293 (303)
T ss_dssp HHHH-HT---TCCTTCCBTTBSSCCCCCCHHHH
T ss_pred HHHH-Hh---cCCCCceecccccccccCCHHHH
Confidence 6553 33 44444456677789999999875
No 56
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.97 E-value=27 Score=20.16 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=24.5
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHc
Q 038597 95 KDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTF 137 (161)
Q Consensus 95 ~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f 137 (161)
.++=..|+.|-..++... =..||..+.|+|+.++|..+
T Consensus 13 ~eED~~L~~~v~~~G~~~-----W~~Ia~~~~~Rt~~qcr~r~ 50 (60)
T 1x41_A 13 AQEEMALLEAVMDCGFGN-----WQDVANQMCTKTKEECEKHY 50 (60)
T ss_dssp HHHHHHHHHHHHHTCTTC-----HHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCc-----HHHHHHHhCCCCHHHHHHHH
Confidence 333334455544555321 36778888999999999865
No 57
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=35.63 E-value=26 Score=22.43 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=24.3
Q ss_pred CHHHHHhHcCCCCCCCHHHHHHHHHhcCCCCCC
Q 038597 129 TPEEIRRTFNIKKDFTPEEEEAVMDEHGWAFHD 161 (161)
Q Consensus 129 s~eeir~~f~i~~d~t~eee~~i~~e~~w~~~~ 161 (161)
|..-+|++++ ++|++|.+++..++.|-+++
T Consensus 50 t~~sfr~m~~---~lt~~ek~elieeFn~G~e~ 79 (90)
T 1jr5_A 50 NQNSFRKIVS---ELTQEDKKTLIDEFNEGFEG 79 (90)
T ss_dssp CSHHHHHHHH---TCCHHHHHHHHTTSSSSSTT
T ss_pred HHHHHHHHHH---HCCHHHHHHHHHHHhccchH
Confidence 5556676665 79999999999999998874
No 58
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=35.32 E-value=37 Score=23.52 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=26.0
Q ss_pred HHHhhccCCchHHHHH-HHHHHHHHHcCCCHHHHHhHcC
Q 038597 101 LLLAANYLEIPALLHR-LCQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 101 Ll~AA~~L~I~~L~~l-~~~~ia~~i~gks~eeir~~f~ 138 (161)
.|..+.|-+-=.-+.. ++..++++++|||++|.++...
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4555666555544444 4566788999999999988753
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=34.59 E-value=23 Score=22.81 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCHHHHHhHcC
Q 038597 118 CQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 118 ~~~ia~~i~gks~eeir~~f~ 138 (161)
=..||..+-|+|.+|+++.|.
T Consensus 34 W~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 34 WANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 367888999999999998765
No 60
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=33.90 E-value=65 Score=24.09 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=44.1
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHc---------CCCHHHHHhHcCC
Q 038597 80 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVK---------GKTPEEIRRTFNI 139 (161)
Q Consensus 80 ~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~---------gks~eeir~~f~i 139 (161)
+...-.+|+.+ .++.+..+.++..|...+...|.+.|..+++..+. ..+.+++.+++.-
T Consensus 127 L~~~c~~~L~~-~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~ 194 (279)
T 3i3n_A 127 LKEFCGEFLKK-KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSD 194 (279)
T ss_dssp HHHHHHHHHHH-HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTC
T ss_pred HHHHHHHHHHH-cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcC
Confidence 33444456321 37888899999999999999999999998876543 2468888888874
No 61
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=33.34 E-value=28 Score=25.91 Aligned_cols=65 Identities=15% Similarity=0.302 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhhccCCchHHHHHHH--------HHHHHHHcCCCHHHHHhHcCCCCCCCHHHHHHHHHhcCCCCCC
Q 038597 94 DKDLHFGLLLAANYLEIPALLHRLC--------QLAADIVKGKTPEEIRRTFNIKKDFTPEEEEAVMDEHGWAFHD 161 (161)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~l~~--------~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~w~~~~ 161 (161)
+-..++.+...+-......+++... +.+..-...-+..++.+.+|.++ ++|-++.-++..|...|
T Consensus 149 nY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s---~~e~~~f~~~~gw~i~d 221 (229)
T 4b0z_A 149 AFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLEN---TKETEKLAEERGWDIRD 221 (229)
T ss_dssp CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSS---HHHHHHHHHHHTCEEET
T ss_pred CHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCC---HHHHHHHHHHcCCEEeC
Confidence 4456677776665444444444432 22222233458999999999875 47777888888898753
No 62
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=33.02 E-value=30 Score=20.75 Aligned_cols=18 Identities=11% Similarity=0.211 Sum_probs=11.2
Q ss_pred CCCCCeEEEEeCCCCEEEe
Q 038597 1 MATTSTVKLRSGDNEVFEV 19 (161)
Q Consensus 1 m~~~~~i~l~s~Dg~~~~v 19 (161)
|++ +.+.+.+.||+.+..
T Consensus 1 ~sS-S~yVitt~DG~~IvT 18 (64)
T 2ra2_A 1 MSG-PNYVMHTNDGRSIVT 18 (64)
T ss_dssp ----CCEEEEETTSCEEEC
T ss_pred CCC-CCEEEEeCCCcEEEc
Confidence 566 457788888887754
No 63
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=32.77 E-value=49 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=26.1
Q ss_pred HHHhhccCCchHHHHHH-HHHHHHHHcCCCHHHHHhHcC
Q 038597 101 LLLAANYLEIPALLHRL-CQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 101 Ll~AA~~L~I~~L~~l~-~~~ia~~i~gks~eeir~~f~ 138 (161)
.|..+.|-+-=.-+..+ +..++++++|||.+|.++..+
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 45556665555444444 456688999999999988754
No 64
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.51 E-value=27 Score=20.32 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=16.3
Q ss_pred HHHHHHHcCCCHHHHHhHcC
Q 038597 119 QLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f~ 138 (161)
..||..+.|+|+.++++++.
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 56678889999999988764
No 65
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=32.26 E-value=48 Score=21.34 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=14.2
Q ss_pred HHHHHHH-----cCCCHHHHHhHc
Q 038597 119 QLAADIV-----KGKTPEEIRRTF 137 (161)
Q Consensus 119 ~~ia~~i-----~gks~eeir~~f 137 (161)
-.|++.. .+.|+++|+..|
T Consensus 53 ~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 53 VVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eeehhhhccCCCCCCCHHHHHHHH
Confidence 4677777 467999998865
No 66
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=32.07 E-value=26 Score=21.99 Aligned_cols=45 Identities=20% Similarity=0.115 Sum_probs=17.8
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHHcCC-----CHHHHHhHcCCC
Q 038597 96 DLHFGLLLAANYLEIPALLHRLCQLAADIVKGK-----TPEEIRRTFNIK 140 (161)
Q Consensus 96 ~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gk-----s~eeir~~f~i~ 140 (161)
+..-.+....+.|..+.+.+.....+++.-.|+ +.+|+++.+|+.
T Consensus 41 e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 41 DDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred HHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 333444555666777777777777776665665 448899999874
No 67
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=31.91 E-value=74 Score=23.39 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=43.8
Q ss_pred cCChHHHHHHHHhhccCCchHHHHHHHHHHHHHHc---------CCCHHHHHhHcCCCCCCC-HHHHHHHHHhcCCCCC
Q 038597 92 SEDKDLHFGLLLAANYLEIPALLHRLCQLAADIVK---------GKTPEEIRRTFNIKKDFT-PEEEEAVMDEHGWAFH 160 (161)
Q Consensus 92 ~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~---------gks~eeir~~f~i~~d~t-~eee~~i~~e~~w~~~ 160 (161)
.++.+..+.++..|...+.+.|.+.|..+++..+. ..+.+++.+++.=. ++. +.|++-.+-=..|+..
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d-~L~v~~E~~v~~av~~W~~~ 207 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLE-KLNVGNERYVFEAVIRWIAH 207 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC--------CTTHHHHTTTCCC
T ss_pred hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHccC-CCCCCCHHHHHHHHHHHHHc
Confidence 36778899999999999999999999999876553 34566666666532 233 2232333333567654
No 68
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=31.59 E-value=13 Score=29.23 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=26.4
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCC
Q 038597 98 HFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDF 143 (161)
Q Consensus 98 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 143 (161)
+..++.||..+|+-.. ++.|-.++++|+.|||++++
T Consensus 245 ~~nl~LaA~~~GLgs~----------~~~~~~~~~v~~~L~lP~~~ 280 (322)
T 4eo3_A 245 VGNLLVQATQMGLVAH----------PVAGYDPVKVKEILKIPEDH 280 (322)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHcCcCEE----------EcCccCHHHHHHHcCcCCCC
Confidence 3466777777776532 45567899999999999875
No 69
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=31.38 E-value=34 Score=21.16 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=28.0
Q ss_pred CChHHHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcC
Q 038597 93 EDKDLHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 93 ~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~ 138 (161)
...++-.-|+.|-...+ . -=..||..+.++|+.|+|..|.
T Consensus 21 WT~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 21 WTEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CCHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 45555555666655566 2 2367888899999999999765
No 70
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=37.43 E-value=10 Score=23.23 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCHHHHHhHcC
Q 038597 117 LCQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 117 ~~~~ia~~i~gks~eeir~~f~ 138 (161)
+-+.+|..+ ++|++|+...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 456778888 899999988774
No 71
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=30.49 E-value=1.1e+02 Score=19.82 Aligned_cols=20 Identities=5% Similarity=0.411 Sum_probs=15.3
Q ss_pred ccHHHHHHHHHHhhcccccCCC
Q 038597 47 ISSRNLAKVVEWCKCMQHRDRN 68 (161)
Q Consensus 47 v~s~~L~~Ii~y~~~~~h~~~~ 68 (161)
-+...+.+|++|++ .|...+
T Consensus 8 ~~~~~i~~~~~~i~--~~~~~~ 27 (129)
T 1bl0_A 8 TDAITIHSILDWIE--DNLESP 27 (129)
T ss_dssp -CHHHHHHHHHHHH--TTTTSC
T ss_pred chHHHHHHHHHHHH--HccCCC
Confidence 35678899999999 877655
No 72
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=30.09 E-value=51 Score=27.19 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCHHHHHhHcCCCCCCC
Q 038597 117 LCQLAADIVKGKTPEEIRRTFNIKKDFT 144 (161)
Q Consensus 117 ~~~~ia~~i~gks~eeir~~f~i~~d~t 144 (161)
+-+-|..+|.-|||+||-+.+|+++|-.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDES 191 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccch
Confidence 3455678899999999999999998744
No 73
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=29.65 E-value=1.1e+02 Score=19.32 Aligned_cols=79 Identities=11% Similarity=0.021 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHH-HHHHHHH-
Q 038597 48 SSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLC-QLAADIV- 125 (161)
Q Consensus 48 ~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~-~~ia~~i- 125 (161)
+...+.++++|++ .|...+. .+.+.-.. ++++...|..++....-.....++...- .....++
T Consensus 5 ~~~~i~~~~~~i~--~~~~~~~---------~~~~lA~~----~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~ 69 (113)
T 3oio_A 5 SQPKLTEAVSLME--ANIEEPL---------STDDIAYY----VGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQ 69 (113)
T ss_dssp GCHHHHHHHHHHH--TCSSSCC---------CHHHHHHH----HTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH--hhhcCCC---------CHHHHHHH----HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3567889999999 8776543 12222222 4667777777776665555554443331 1122222
Q ss_pred -cCCCHHHHHhHcCCCC
Q 038597 126 -KGKTPEEIRRTFNIKK 141 (161)
Q Consensus 126 -~gks~eeir~~f~i~~ 141 (161)
.+.++.||-..+|..+
T Consensus 70 ~~~~~i~eIA~~~Gf~~ 86 (113)
T 3oio_A 70 QTSKSIVQIGLACGFSS 86 (113)
T ss_dssp HCCCCHHHHHHHTTCSC
T ss_pred cCCCCHHHHHHHHCCCC
Confidence 2567777776666543
No 74
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=29.01 E-value=55 Score=16.65 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=14.0
Q ss_pred HHcCCCHHHHHhHcCCC
Q 038597 124 IVKGKTPEEIRRTFNIK 140 (161)
Q Consensus 124 ~i~gks~eeir~~f~i~ 140 (161)
...|.|..+|.+.|||.
T Consensus 18 ~~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHTTCCHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 34688999999999985
No 75
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=38 Score=20.30 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHHcCCCHHHHHhHc
Q 038597 118 CQLAADIVKGKTPEEIRRTF 137 (161)
Q Consensus 118 ~~~ia~~i~gks~eeir~~f 137 (161)
-..||..+.|+|..++|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 46788889999999999876
No 76
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=28.68 E-value=80 Score=22.17 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHh--------HcCCCCCCCHH
Q 038597 112 ALLHRLCQLAADIVKGKTPEEIRR--------TFNIKKDFTPE 146 (161)
Q Consensus 112 ~L~~l~~~~ia~~i~gks~eeir~--------~f~i~~d~t~e 146 (161)
.++.-.++.+...++|+|++||.+ .+|+..-+||-
T Consensus 86 ~IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 86 RIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 455556677777889999999975 56777777773
No 77
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=28.67 E-value=18 Score=22.22 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=17.7
Q ss_pred HHHHHHHHcCCCHHHHHhHcC
Q 038597 118 CQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 118 ~~~ia~~i~gks~eeir~~f~ 138 (161)
=..||..+-|+|..++|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 467888889999999998764
No 78
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=28.11 E-value=44 Score=19.06 Aligned_cols=39 Identities=28% Similarity=0.271 Sum_probs=25.2
Q ss_pred ChHHHHHHHHhhccCCchHHHHHHHHHHHHHHc-CCCHHHHHhHc
Q 038597 94 DKDLHFGLLLAANYLEIPALLHRLCQLAADIVK-GKTPEEIRRTF 137 (161)
Q Consensus 94 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~-gks~eeir~~f 137 (161)
..++-..|+.|..-.+... =..||..+. |+|+.+.|..+
T Consensus 13 T~eED~~L~~~v~~~G~~~-----W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 13 GADEELLLIDACETLGLGN-----WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp CHHHHHHHHHHHHHTTTTC-----HHHHHHHHCSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCC-----HHHHHHHHCCCCCHHHHHHHH
Confidence 4444444555555555322 356788888 89999999865
No 79
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=28.02 E-value=1.1e+02 Score=18.87 Aligned_cols=79 Identities=6% Similarity=-0.063 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHHHHH-HHHH--
Q 038597 49 SRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLCQLA-ADIV-- 125 (161)
Q Consensus 49 s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i-a~~i-- 125 (161)
+..+++|.+|++ .|..++.. .+.+.-.. ++++...|..++....-.....++...--.- ..++
T Consensus 1 s~~~~~i~~~i~--~~~~~~~~--------~~~~lA~~----~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~ 66 (103)
T 3lsg_A 1 SNAKELIQNIIE--ESYTDSQF--------TLSVLSEK----LDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLT 66 (103)
T ss_dssp CHHHHHHHHHHH--HHTTCTTC--------CHHHHHHH----TTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH--HHccCCCC--------CHHHHHHH----HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHC
Confidence 357889999999 87765332 23332223 4788888888888776666666555442222 2222
Q ss_pred cCCCHHHHHhHcCCCC
Q 038597 126 KGKTPEEIRRTFNIKK 141 (161)
Q Consensus 126 ~gks~eeir~~f~i~~ 141 (161)
.+.+..+|-..+|..+
T Consensus 67 ~~~si~~iA~~~Gf~~ 82 (103)
T 3lsg_A 67 TELKNYEIAEQVGFED 82 (103)
T ss_dssp CCCCHHHHHHHTTCSC
T ss_pred CCCCHHHHHHHhCCCC
Confidence 3678888888888654
No 80
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=27.81 E-value=38 Score=23.91 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=25.4
Q ss_pred HHHhhccCCchH-HHHHHHHHHHHHHcCCCHHHHHhHcC
Q 038597 101 LLLAANYLEIPA-LLHRLCQLAADIVKGKTPEEIRRTFN 138 (161)
Q Consensus 101 Ll~AA~~L~I~~-L~~l~~~~ia~~i~gks~eeir~~f~ 138 (161)
.|..+.|-.-=. +--.++..++++++|||++|.++..+
T Consensus 52 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 52 VIEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp BEEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 455555555443 33444567788999999999987654
No 81
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=27.62 E-value=37 Score=17.25 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=6.5
Q ss_pred CHHHHHHHHHh
Q 038597 144 TPEEEEAVMDE 154 (161)
Q Consensus 144 t~eee~~i~~e 154 (161)
||||..++++|
T Consensus 13 tpeelkklkee 23 (36)
T 2ki0_A 13 TPEELKKLKEE 23 (36)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 56666655554
No 82
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=25.92 E-value=19 Score=25.62 Aligned_cols=35 Identities=9% Similarity=0.268 Sum_probs=23.0
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCC
Q 038597 99 FGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDF 143 (161)
Q Consensus 99 ~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 143 (161)
..++.||..||+... ++.|-..+++++.|||++++
T Consensus 141 ~nl~LaA~~~Glgsc----------~~~~~~~~~v~~~L~lp~~~ 175 (206)
T 3gag_A 141 MNLMQVVRVYGYDSV----------PMRGVDFDAIKTYLDMPNGW 175 (206)
T ss_dssp HHHHHHHHHTTCEEC----------CBCCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHcCCCee----------eecccCHHHHHHHhCcCCCc
Confidence 345555555555432 33456789999999998764
No 83
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=25.53 E-value=70 Score=22.06 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHh--------HcCCCCCCCH
Q 038597 113 LLHRLCQLAADIVKGKTPEEIRR--------TFNIKKDFTP 145 (161)
Q Consensus 113 L~~l~~~~ia~~i~gks~eeir~--------~f~i~~d~t~ 145 (161)
++.-.++.+...++|+|++||.. .+|+..-+||
T Consensus 80 IvkGl~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSp 120 (141)
T 3g0m_A 80 IVKGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTP 120 (141)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCc
Confidence 44455566667779999999975 4567666776
No 84
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=25.44 E-value=49 Score=23.26 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=24.1
Q ss_pred HHHhhccCCchH-HHHHHHHHHHHHHcCCCHHHHHhHc
Q 038597 101 LLLAANYLEIPA-LLHRLCQLAADIVKGKTPEEIRRTF 137 (161)
Q Consensus 101 Ll~AA~~L~I~~-L~~l~~~~ia~~i~gks~eeir~~f 137 (161)
.|..+.|-+-=. +.-.++..++++++|||++|.++..
T Consensus 47 ~I~D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~ 84 (153)
T 4eb5_C 47 RIEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKIT 84 (153)
T ss_dssp BEEEEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCC
T ss_pred eEEEEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhh
Confidence 455555555443 3344456778899999999987543
No 85
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=25.40 E-value=86 Score=16.79 Aligned_cols=23 Identities=9% Similarity=0.216 Sum_probs=15.3
Q ss_pred HHHHHHHcCCCHH-------HHHhHcCCCC
Q 038597 119 QLAADIVKGKTPE-------EIRRTFNIKK 141 (161)
Q Consensus 119 ~~ia~~i~gks~e-------eir~~f~i~~ 141 (161)
..+.+.|++.|.- .+.+.|||+-
T Consensus 4 ~~iie~i~~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 4 DEIIEAIEKLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHCCCc
Confidence 3566777888744 4556788864
No 86
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.35 E-value=26 Score=19.81 Aligned_cols=13 Identities=8% Similarity=0.470 Sum_probs=10.2
Q ss_pred HHHHHHHHhcCCC
Q 038597 146 EEEEAVMDEHGWA 158 (161)
Q Consensus 146 eee~~i~~e~~w~ 158 (161)
..-.+++.+|||+
T Consensus 28 k~iKklEdeNPWL 40 (50)
T 1a92_A 28 KKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHCTTH
T ss_pred HHHHhhhccCCch
Confidence 4557888899996
No 87
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.33 E-value=1.3e+02 Score=18.73 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhcccccCCCCCCCCcchhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHH-HHHHHHHc-C
Q 038597 50 RNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLC-QLAADIVK-G 127 (161)
Q Consensus 50 ~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~-~~ia~~i~-g 127 (161)
..+.+|++|+. .|...+. .+.+.-.. ++++...|..++....-.....++...- .....++. +
T Consensus 2 ~~i~~~~~~i~--~~~~~~~---------~~~~lA~~----~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~ 66 (108)
T 3mn2_A 2 NAVRQVEEYIE--ANWMRPI---------TIEKLTAL----TGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDG 66 (108)
T ss_dssp HHHHHHHHHHH--HHTTSCC---------CHHHHHHH----HTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHH--HcccCCC---------CHHHHHHH----HCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcC
Confidence 46789999999 7775542 12322222 3677777777777665555555554442 22222332 2
Q ss_pred ---CCHHHHHhHcCCCC
Q 038597 128 ---KTPEEIRRTFNIKK 141 (161)
Q Consensus 128 ---ks~eeir~~f~i~~ 141 (161)
.|..+|-..+|..+
T Consensus 67 ~~~~si~~IA~~~Gf~~ 83 (108)
T 3mn2_A 67 ATPTTVTAAALSCGFSN 83 (108)
T ss_dssp SSCCCHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHhCCCC
Confidence 26777777666553
No 88
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=25.15 E-value=49 Score=19.52 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=15.7
Q ss_pred CCCCCeEEEEeCCCCEEEecHH
Q 038597 1 MATTSTVKLRSGDNEVFEVEKQ 22 (161)
Q Consensus 1 m~~~~~i~l~s~Dg~~~~v~~~ 22 (161)
|++.-.|.+++.+|+.+.++..
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~v~ 22 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYEVR 22 (79)
T ss_dssp --CCEEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEEEeCCCCEEEEEEC
Confidence 5666679999999998877543
No 89
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=25.11 E-value=13 Score=26.73 Aligned_cols=19 Identities=21% Similarity=0.580 Sum_probs=14.9
Q ss_pred HcCCCHHHHHhHcCC-CCCC
Q 038597 125 VKGKTPEEIRRTFNI-KKDF 143 (161)
Q Consensus 125 i~gks~eeir~~f~i-~~d~ 143 (161)
+.|-..+++++.||| ++++
T Consensus 163 i~~~~~~~v~~~L~l~p~~~ 182 (212)
T 3ge6_A 163 IGGYEKDQIAEAFGMEKDRY 182 (212)
T ss_dssp ECCSCHHHHHHHTTCCSSSE
T ss_pred ecccCHHHHHHHhCCCCCCc
Confidence 345678999999999 7764
No 90
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=24.50 E-value=13 Score=26.67 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=22.9
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCC-CCC
Q 038597 99 FGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIK-KDF 143 (161)
Q Consensus 99 ~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~-~d~ 143 (161)
..|+.||..||+.. .++.|-..+++++.|||+ +++
T Consensus 148 ~nl~LaA~~~Glgs----------~~~~~~~~~~v~~~l~lp~~~~ 183 (218)
T 1vfr_A 148 GNALHTLARLNIDS----------TTMEGIDPELLSEIFADELKGY 183 (218)
T ss_dssp HHHHHHHHHHTCEE----------EEECCSCHHHHHHHTTTTTTTE
T ss_pred HHHHHHHHHcCCCc----------ccccccCHHHHHHHhCCCcccc
Confidence 45555555555543 133456789999999998 653
No 91
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.99 E-value=74 Score=18.51 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.2
Q ss_pred HHcCCCHHHHHhHcCCCC
Q 038597 124 IVKGKTPEEIRRTFNIKK 141 (161)
Q Consensus 124 ~i~gks~eeir~~f~i~~ 141 (161)
.+.|+|..||-+.+|++.
T Consensus 28 ~~~g~s~~eIA~~l~is~ 45 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISP 45 (79)
T ss_dssp HTTTCCHHHHHHHTTSCH
T ss_pred HHcCCCHHHHHHHHCcCH
Confidence 456788888888888753
No 92
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=23.48 E-value=53 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=11.9
Q ss_pred HHHHH-cCCCHHHHHhHc
Q 038597 121 AADIV-KGKTPEEIRRTF 137 (161)
Q Consensus 121 ia~~i-~gks~eeir~~f 137 (161)
|-.++ .|+|.+||+.+|
T Consensus 49 Vre~l~~G~Sd~eI~~~m 66 (90)
T 2kw0_A 49 VYELMQEGKSKKEIVDYM 66 (90)
T ss_dssp HHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 33433 499999998854
No 93
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=22.89 E-value=21 Score=25.47 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=25.3
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCC
Q 038597 98 HFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDF 143 (161)
Q Consensus 98 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 143 (161)
+..|+.||..||+-.. ++.|-..+++++.|||+++.
T Consensus 119 ~~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~l~lp~~~ 154 (191)
T 3h4o_A 119 TDHMMLQATELGLASV----------WVCYFNPDIIREEFSLPDNL 154 (191)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHCCCCEE----------EEcccCHHHHHHHhCcCCCc
Confidence 4566677777776643 33456789999999998763
No 94
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=22.77 E-value=80 Score=18.66 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=10.2
Q ss_pred eEEEEeCCCCEEEe
Q 038597 6 TVKLRSGDNEVFEV 19 (161)
Q Consensus 6 ~i~l~s~Dg~~~~v 19 (161)
.+.+.+.||+.+..
T Consensus 4 ~yvitT~DG~~IvT 17 (61)
T 2rb6_A 4 QYIMSTKDGKMITS 17 (61)
T ss_dssp EEEEEETTSCEEEE
T ss_pred cEEEEeCCCcEEEc
Confidence 57777888887754
No 95
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.71 E-value=56 Score=20.57 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=9.9
Q ss_pred cCCCHHHHHhHc
Q 038597 126 KGKTPEEIRRTF 137 (161)
Q Consensus 126 ~gks~eeir~~f 137 (161)
.|+|.+||+.+|
T Consensus 58 ~G~sd~eI~~~~ 69 (84)
T 2hl7_A 58 QGKSDGEIVDYM 69 (84)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 499999998865
No 96
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=22.45 E-value=29 Score=24.69 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCC
Q 038597 97 LHFGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDF 143 (161)
Q Consensus 97 ~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 143 (161)
-+..|+.||..||+-.. ++.|-..+++++.|||++++
T Consensus 117 a~~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~~ 153 (200)
T 2fre_A 117 AWFSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDGF 153 (200)
T ss_dssp HHHHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCCc
Confidence 35677788888887652 24466789999999998763
No 97
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=22.21 E-value=18 Score=25.59 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=14.4
Q ss_pred cCCCHHHHHhHcCCCCCC
Q 038597 126 KGKTPEEIRRTFNIKKDF 143 (161)
Q Consensus 126 ~gks~eeir~~f~i~~d~ 143 (161)
.|-..+++++.|||++++
T Consensus 158 ~~~~~~~v~~~l~lp~~~ 175 (205)
T 1nox_A 158 LGFDPERVRAILGLPSRA 175 (205)
T ss_dssp CCSCHHHHHHHHTCCTTC
T ss_pred cCCCHHHHHHHhCCCCCC
Confidence 355788999999998764
No 98
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.01 E-value=62 Score=19.21 Aligned_cols=33 Identities=3% Similarity=-0.091 Sum_probs=22.6
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHc
Q 038597 99 FGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTF 137 (161)
Q Consensus 99 ~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f 137 (161)
.-|+.+-..+|-. =..||..+.|+|..++|..+
T Consensus 18 ~~l~~~~~~~G~~------W~~Ia~~~~~Rt~~q~k~r~ 50 (72)
T 2cu7_A 18 ELFEQGLAKFGRR------WTKISKLIGSRTVLQVKSYA 50 (72)
T ss_dssp HHHHHHHHHTCSC------HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHCcC------HHHHHHHcCCCCHHHHHHHH
Confidence 3344444445542 36788899999999999865
No 99
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=21.80 E-value=2.4e+02 Score=20.66 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhcccccCCC
Q 038597 50 RNLAKVVEWCKCMQHRDRN 68 (161)
Q Consensus 50 ~~L~~Ii~y~~~~~h~~~~ 68 (161)
..+.++++|++ .|...+
T Consensus 3 ~~~~~~~~~i~--~~~~~~ 19 (292)
T 1d5y_A 3 GIIRDLLIWLE--GHLDQP 19 (292)
T ss_dssp HHHHHHHHHHH--TTSSSS
T ss_pred HHHHHHHHHHH--hCCCCC
Confidence 56889999999 887543
No 100
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=21.80 E-value=91 Score=23.12 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHhHcCCCCC-CCHHHHHHHH
Q 038597 112 ALLHRLCQLAADIVKGKTPEEIRRTFNIKKD-FTPEEEEAVM 152 (161)
Q Consensus 112 ~L~~l~~~~ia~~i~gks~eeir~~f~i~~d-~t~eee~~i~ 152 (161)
.|+-.+|-.+|.++.+..+-.++++..+.++ +|.++-.+.+
T Consensus 95 qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE 136 (254)
T 2f2c_A 95 QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQE 136 (254)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 5788889999999987655456666667654 8887654443
No 101
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=21.77 E-value=40 Score=23.22 Aligned_cols=89 Identities=8% Similarity=0.008 Sum_probs=53.3
Q ss_pred CeEEEEeCCCCEEEecHHHHHHH--HHHHHHhhhc---cCCCcccccccHHHHHHHHHHhhcccccCCCCCCCCcchhhh
Q 038597 5 STVKLRSGDNEVFEVEKQVMIQS--GTIRNMIEDD---AADGEIPLQISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEE 79 (161)
Q Consensus 5 ~~i~l~s~Dg~~~~v~~~~a~~S--~~l~~~~~~~---~~~~~I~l~v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~ 79 (161)
..|+|- -.|+.|.+....+..- .+|...-... ...+.+-+.=++..++.|+.|++ .-+-. .|
T Consensus 35 ~~V~LN-VGG~~F~T~~~TL~~~P~S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILnflR--~G~l~-~p--------- 101 (140)
T 2nz0_B 35 ELIVLN-VSGRRFQTWRTTLERYPDTLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLNFYR--TGKLH-YP--------- 101 (140)
T ss_dssp CEEEEE-ETTEEEEEEHHHHHTCTTSTTTSGGGGGSEETTTTEEEECSCHHHHHHHHHHHH--HSSBC-CC---------
T ss_pred CEEEEE-ECCEEEEeeHHHHhcCCCeeecccCCcccccCCCCeEEEeCCcHHHHHHHHHHh--cCCcC-CC---------
Confidence 345543 3499999999886531 1121100000 12344555578999999999998 42211 10
Q ss_pred HHHHHHhhhhhhcCChHHHHHHHHhhccCCchHH-HHHHHHH
Q 038597 80 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPAL-LHRLCQL 120 (161)
Q Consensus 80 ~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L-~~l~~~~ 120 (161)
-++ .+..|...|.|.+|.+| ++.||..
T Consensus 102 -----------~~~---~~~~l~eEa~fy~i~~l~l~~CC~~ 129 (140)
T 2nz0_B 102 -----------RYE---CISAYDDELAFYGILPEIIGDCCYE 129 (140)
T ss_dssp -----------TTS---CHHHHHHHHHHHTCCGGGBCTTTHH
T ss_pred -----------CCc---CHHHHHHHHHHcCCChHHHHHHHHH
Confidence 011 15678889999999988 5677743
No 102
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=21.52 E-value=18 Score=26.05 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHHcCCCHHHHHhHcCCCCCC
Q 038597 99 FGLLLAANYLEIPALLHRLCQLAADIVKGKTPEEIRRTFNIKKDF 143 (161)
Q Consensus 99 ~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 143 (161)
..|+.||.-||+... ++.|-..+++++.|||++++
T Consensus 152 ~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~L~lp~~~ 186 (218)
T 3bem_A 152 MMFMLSAAAAGWDTC----------PMIGFDAEAVKRILNIDDQF 186 (218)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHcCCCcc----------cccCcCHHHHHHHhCCCCCc
Confidence 455555666655532 23355789999999998763
No 103
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=21.29 E-value=74 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=16.2
Q ss_pred CCeEEEEeCCCCEEEecHH
Q 038597 4 TSTVKLRSGDNEVFEVEKQ 22 (161)
Q Consensus 4 ~~~i~l~s~Dg~~~~v~~~ 22 (161)
++.+++.|.||+.+.|...
T Consensus 38 g~~~~l~s~Dg~~Vtv~l~ 56 (121)
T 3kdf_A 38 GKMFILSDGEGKNGTIELM 56 (121)
T ss_dssp SSEEEEECTTSCEEEEECS
T ss_pred CCEEEEEeCCCCEEEEEeC
Confidence 5689999999999998754
No 104
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=20.98 E-value=48 Score=18.21 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=15.6
Q ss_pred HHHHHHHcCCCHHHHHhHc
Q 038597 119 QLAADIVKGKTPEEIRRTF 137 (161)
Q Consensus 119 ~~ia~~i~gks~eeir~~f 137 (161)
..||..+.|+|+.++|..+
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw 45 (52)
T 1guu_A 27 KVIANYLPNRTDVQCQHRW 45 (52)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 5678888899999998865
No 105
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.72 E-value=3e+02 Score=21.39 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=47.0
Q ss_pred ccHHHHHHHHHHhhcccccCCCCCCCCcchhhhHHHHHHhhhhhhcCChHHHHHHHHhhccCCchHHHHHHH-HHHHHHH
Q 038597 47 ISSRNLAKVVEWCKCMQHRDRNNNNDNKEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLHRLC-QLAADIV 125 (161)
Q Consensus 47 v~s~~L~~Ii~y~~~~~h~~~~~~~~~~~~~~~~~~wd~~F~~~~~~~~~~l~~Ll~AA~~L~I~~L~~l~~-~~ia~~i 125 (161)
.....+.++++|++ .|...+. .+.++-.. ++++...|..++....-+....++...- .....++
T Consensus 302 ~~d~~~~~~~~~i~--~~~~~~~---------~~~~~a~~----~~~s~~~l~r~f~~~~g~s~~~~~~~~r~~~a~~~L 366 (412)
T 4fe7_A 302 LTDPAVIQAMHYIR--NHACKGI---------KVDQVLDA----VGISRSNLEKRFKEEVGETIHAMIHAEKLEKARSLL 366 (412)
T ss_dssp CCCHHHHHHHHHHH--HHGGGTC---------CHHHHHHH----TTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHH--hhccCCC---------CHHHHHHH----HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34678999999999 8765432 23444333 3677777777777665555555554442 1112222
Q ss_pred --cCCCHHHHHhHcCCC
Q 038597 126 --KGKTPEEIRRTFNIK 140 (161)
Q Consensus 126 --~gks~eeir~~f~i~ 140 (161)
.+.+..+|-..+|..
T Consensus 367 ~~~~~~i~~ia~~~Gf~ 383 (412)
T 4fe7_A 367 ISTTLSINEISQMCGYP 383 (412)
T ss_dssp HHCCCCHHHHHHHTTCS
T ss_pred hcCCCCHHHHHHHcCCC
Confidence 245777776666654
Done!