Query 038598
Match_columns 392
No_of_seqs 133 out of 1387
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 8.7E-71 1.9E-75 559.1 42.7 383 1-392 143-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 2.5E-68 5.5E-73 537.6 39.7 376 1-392 170-554 (596)
3 PLN02792 oxidoreductase 100.0 5.1E-67 1.1E-71 526.0 39.6 365 1-392 156-523 (536)
4 KOG1263 Multicopper oxidases [ 100.0 1.8E-66 4E-71 518.6 38.3 379 1-392 168-555 (563)
5 PLN02991 oxidoreductase 100.0 5.5E-66 1.2E-70 517.8 39.6 359 1-392 168-530 (543)
6 PLN02354 copper ion binding / 100.0 2.1E-65 4.6E-70 516.6 39.9 364 1-392 167-538 (552)
7 PLN02835 oxidoreductase 100.0 5.6E-65 1.2E-69 512.8 40.0 354 1-392 169-531 (539)
8 PLN02168 copper ion binding / 100.0 3E-64 6.5E-69 506.2 39.0 357 1-392 166-541 (545)
9 PLN02604 oxidoreductase 100.0 1.6E-63 3.5E-68 507.1 40.4 363 1-392 164-561 (566)
10 PLN02191 L-ascorbate oxidase 100.0 5.3E-63 1.1E-67 502.5 39.0 362 1-392 163-561 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 7.3E-63 1.6E-67 500.9 39.6 362 1-392 141-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 6.5E-59 1.4E-63 470.8 37.3 350 1-374 147-533 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.6E-43 3.4E-48 358.6 32.6 259 26-372 248-586 (587)
14 PRK10965 multicopper oxidase; 100.0 1E-41 2.2E-46 342.9 27.9 269 22-372 210-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 6.8E-42 1.5E-46 341.2 26.3 249 22-374 207-469 (471)
16 COG2132 SufI Putative multicop 100.0 6.6E-34 1.4E-38 284.6 26.0 261 22-373 187-449 (451)
17 PF00394 Cu-oxidase: Multicopp 100.0 5.5E-32 1.2E-36 233.2 12.4 141 1-145 9-158 (159)
18 PF07731 Cu-oxidase_2: Multico 99.9 5E-28 1.1E-32 203.9 10.3 100 274-374 36-136 (138)
19 TIGR02376 Cu_nitrite_red nitri 99.7 4.7E-18 1E-22 161.4 7.9 112 22-147 186-299 (311)
20 TIGR02376 Cu_nitrite_red nitri 99.3 8.3E-10 1.8E-14 105.1 24.0 87 276-373 206-296 (311)
21 PLN02604 oxidoreductase 99.0 4.2E-09 9.1E-14 108.3 11.5 87 274-375 57-145 (566)
22 TIGR03388 ascorbase L-ascorbat 98.5 1.1E-06 2.4E-11 90.2 11.3 87 274-375 34-122 (541)
23 PF07732 Cu-oxidase_3: Multico 98.3 7E-07 1.5E-11 72.6 4.7 86 274-374 28-115 (117)
24 TIGR03389 laccase laccase, pla 98.2 8.3E-05 1.8E-09 76.5 19.1 73 274-358 189-264 (539)
25 PRK10965 multicopper oxidase; 97.9 7.8E-05 1.7E-09 76.1 10.2 91 28-125 415-509 (523)
26 PF07731 Cu-oxidase_2: Multico 97.9 0.00023 5.1E-09 59.4 11.5 78 44-125 33-121 (138)
27 PLN02835 oxidoreductase 97.8 0.0012 2.7E-08 67.6 17.8 83 25-124 49-132 (539)
28 TIGR01480 copper_res_A copper- 97.8 0.00011 2.4E-09 75.8 9.7 85 27-124 488-572 (587)
29 PLN02191 L-ascorbate oxidase 97.8 9E-05 1.9E-09 76.5 8.9 80 274-374 56-143 (574)
30 PLN02792 oxidoreductase 97.7 0.0018 3.9E-08 66.3 17.8 81 25-124 36-119 (536)
31 PF00394 Cu-oxidase: Multicopp 97.7 0.00018 3.8E-09 61.9 8.3 88 274-373 62-156 (159)
32 PLN02354 copper ion binding / 97.7 0.002 4.3E-08 66.3 17.3 83 25-124 47-130 (552)
33 PRK10883 FtsI repressor; Provi 97.7 0.007 1.5E-07 61.2 20.8 56 290-356 239-295 (471)
34 TIGR03095 rusti_cyanin rusticy 97.6 0.00036 7.7E-09 59.0 8.1 35 339-373 114-148 (148)
35 PLN02991 oxidoreductase 97.5 0.0042 9.2E-08 63.6 16.8 83 25-124 48-131 (543)
36 TIGR03390 ascorbOXfungal L-asc 97.4 0.0092 2E-07 61.4 18.2 85 25-124 28-114 (538)
37 PLN02168 copper ion binding / 97.4 0.00057 1.2E-08 70.0 8.2 82 274-376 59-147 (545)
38 TIGR02656 cyanin_plasto plasto 97.3 0.0008 1.7E-08 52.9 6.9 81 274-373 19-99 (99)
39 PLN00044 multi-copper oxidase- 97.3 0.0024 5.1E-08 66.0 11.5 86 274-375 62-149 (596)
40 PF00127 Copper-bind: Copper b 96.6 0.01 2.2E-07 46.6 7.4 40 330-373 60-99 (99)
41 TIGR03096 nitroso_cyanin nitro 96.1 0.023 5E-07 46.8 6.9 58 274-359 63-121 (135)
42 KOG1263 Multicopper oxidases [ 95.9 0.029 6.2E-07 57.6 8.0 86 274-375 61-148 (563)
43 COG2132 SufI Putative multicop 95.7 0.075 1.6E-06 53.6 10.1 77 44-125 356-435 (451)
44 COG4454 Uncharacterized copper 95.2 0.038 8.2E-07 46.3 4.9 45 329-373 113-157 (158)
45 TIGR03095 rusti_cyanin rusticy 95.1 0.13 2.7E-06 43.6 8.1 86 23-124 40-133 (148)
46 PRK02888 nitrous-oxide reducta 95.1 0.085 1.8E-06 54.3 8.2 43 332-374 591-634 (635)
47 PF07732 Cu-oxidase_3: Multico 94.8 0.051 1.1E-06 44.0 4.7 86 24-125 14-100 (117)
48 PRK02710 plastocyanin; Provisi 94.6 0.12 2.6E-06 42.0 6.5 70 274-372 49-118 (119)
49 TIGR03096 nitroso_cyanin nitro 94.3 0.28 6.2E-06 40.5 8.0 61 44-124 60-120 (135)
50 PF13473 Cupredoxin_1: Cupredo 94.1 0.1 2.2E-06 41.2 5.0 29 332-360 68-96 (104)
51 PF13473 Cupredoxin_1: Cupredo 93.8 0.32 6.8E-06 38.3 7.2 61 44-124 34-94 (104)
52 TIGR03102 halo_cynanin halocya 92.0 0.87 1.9E-05 36.7 7.4 36 334-373 80-115 (115)
53 TIGR02375 pseudoazurin pseudoa 88.3 0.51 1.1E-05 38.1 3.2 37 336-376 54-90 (116)
54 PF06525 SoxE: Sulfocyanin (So 87.4 3.9 8.5E-05 35.9 8.3 78 44-124 85-171 (196)
55 COG4454 Uncharacterized copper 86.6 1.7 3.7E-05 36.6 5.4 75 44-124 62-142 (158)
56 TIGR02657 amicyanin amicyanin. 86.4 3.6 7.8E-05 30.8 6.8 71 274-373 13-83 (83)
57 TIGR02656 cyanin_plasto plasto 85.5 3.1 6.7E-05 32.4 6.2 68 44-123 16-85 (99)
58 PF14344 DUF4397: Domain of un 82.9 22 0.00049 28.4 11.1 38 75-112 45-84 (122)
59 TIGR02695 azurin azurin. Azuri 80.2 4 8.6E-05 33.2 4.9 80 44-123 15-111 (125)
60 PF12690 BsuPI: Intracellular 77.5 28 0.0006 26.1 9.0 67 55-122 4-82 (82)
61 TIGR02866 CoxB cytochrome c ox 76.1 7.9 0.00017 34.4 6.2 41 334-374 151-192 (201)
62 PF11142 DUF2917: Protein of u 75.6 10 0.00022 26.9 5.4 47 47-105 2-48 (63)
63 PF04151 PPC: Bacterial pre-pe 74.6 15 0.00033 26.2 6.4 66 44-123 4-69 (70)
64 PF00116 COX2: Cytochrome C ox 74.4 23 0.0005 28.6 8.0 70 274-371 48-118 (120)
65 COG1470 Predicted membrane pro 72.9 25 0.00054 35.2 9.1 77 44-127 388-470 (513)
66 PF01835 A2M_N: MG2 domain; I 68.8 36 0.00079 26.0 7.8 71 49-124 11-85 (99)
67 PF07691 PA14: PA14 domain; I 66.9 51 0.0011 26.9 8.9 63 46-113 53-122 (145)
68 smart00758 PA14 domain in bact 63.6 58 0.0013 26.4 8.5 63 46-113 51-114 (136)
69 PRK02888 nitrous-oxide reducta 59.5 36 0.00077 35.7 7.6 27 95-124 591-617 (635)
70 PF07705 CARDB: CARDB; InterP 59.3 73 0.0016 23.9 9.4 67 48-124 14-83 (101)
71 COG3794 PetE Plastocyanin [Ene 58.1 16 0.00034 30.0 4.0 40 330-373 88-127 (128)
72 PRK02710 plastocyanin; Provisi 56.7 48 0.001 26.6 6.6 61 44-124 46-106 (119)
73 PF00127 Copper-bind: Copper b 54.0 56 0.0012 25.1 6.4 65 44-124 16-86 (99)
74 PF00116 COX2: Cytochrome C ox 53.3 1.2E+02 0.0026 24.4 9.5 60 44-124 45-104 (120)
75 PF06525 SoxE: Sulfocyanin (So 52.0 26 0.00056 30.9 4.5 41 334-374 147-187 (196)
76 PF11614 FixG_C: IG-like fold 50.2 65 0.0014 25.6 6.5 48 54-110 34-83 (118)
77 COG1622 CyoA Heme/copper-type 50.0 48 0.001 30.5 6.2 41 333-373 170-211 (247)
78 TIGR03094 sulfo_cyanin sulfocy 50.0 29 0.00063 30.2 4.4 40 335-374 147-186 (195)
79 PF10633 NPCBM_assoc: NPCBM-as 49.5 99 0.0022 22.4 7.8 67 49-124 1-75 (78)
80 PF14392 zf-CCHC_4: Zinc knuck 46.9 28 0.00062 23.1 3.2 41 324-364 4-45 (49)
81 PF04379 DUF525: Protein of un 41.1 68 0.0015 24.5 4.8 49 54-105 15-67 (90)
82 PF10989 DUF2808: Protein of u 37.6 39 0.00085 28.3 3.4 25 334-358 99-127 (146)
83 PF14874 PapD-like: Flagellar- 37.2 1.8E+02 0.004 22.0 9.0 63 48-119 15-81 (102)
84 PF15415 DUF4622: Protein of u 36.7 63 0.0014 29.4 4.5 42 45-88 94-137 (310)
85 PRK09918 putative fimbrial cha 34.4 1.4E+02 0.0029 27.2 6.6 63 44-111 75-137 (230)
86 PRK05461 apaG CO2+/MG2+ efflux 33.8 1.3E+02 0.0029 24.5 5.8 50 54-106 32-85 (127)
87 PF06775 Seipin: Putative adip 31.8 59 0.0013 28.8 3.7 51 94-144 50-105 (199)
88 COG3241 Azurin [Energy product 31.8 61 0.0013 26.2 3.3 41 83-123 91-135 (151)
89 PF13464 DUF4115: Domain of un 31.7 1.4E+02 0.0031 21.7 5.2 40 45-89 22-61 (77)
90 TIGR02745 ccoG_rdxA_fixG cytoc 31.4 1.7E+02 0.0036 29.5 7.1 51 53-111 348-399 (434)
91 PF03459 TOBE: TOBE domain; I 30.9 38 0.00083 23.4 2.0 49 57-110 12-60 (64)
92 PRK03999 translation initiatio 30.9 3E+02 0.0065 22.5 7.5 51 23-80 13-68 (129)
93 COG5033 TFG3 Transcription ini 30.4 33 0.00072 30.5 1.8 16 299-314 74-89 (225)
94 MTH00047 COX2 cytochrome c oxi 29.9 3.4E+02 0.0073 24.0 8.1 40 335-374 151-191 (194)
95 KOG4078 Putative mitochondrial 29.7 29 0.00062 28.7 1.2 37 49-87 120-156 (173)
96 PTZ00047 cytochrome c oxidase 29.0 2.9E+02 0.0062 23.7 7.1 38 336-373 109-147 (162)
97 PRK15195 fimbrial chaperone pr 28.4 87 0.0019 28.4 4.3 21 44-64 77-97 (229)
98 TIGR02866 CoxB cytochrome c ox 28.3 2.7E+02 0.0058 24.6 7.3 28 94-124 148-175 (201)
99 TIGR01433 CyoA cytochrome o ub 28.3 54 0.0012 29.7 2.9 43 328-373 170-213 (226)
100 PF14016 DUF4232: Protein of u 28.0 2.6E+02 0.0055 22.6 6.7 57 53-112 20-83 (131)
101 PRK15295 fimbrial assembly cha 26.2 2E+02 0.0044 26.0 6.3 63 44-110 72-136 (226)
102 PRK15249 fimbrial chaperone pr 25.9 92 0.002 28.8 4.0 20 44-63 85-104 (253)
103 PF10636 hemP: Hemin uptake pr 25.2 50 0.0011 20.9 1.4 19 45-63 14-32 (38)
104 PRK11385 putativi pili assembl 24.9 1.6E+02 0.0034 27.0 5.3 64 44-110 84-147 (236)
105 PF00345 PapD_N: Pili and flag 24.5 1.2E+02 0.0026 24.1 4.1 32 44-75 55-91 (122)
106 TIGR03094 sulfo_cyanin sulfocy 24.5 3.7E+02 0.0081 23.5 7.0 78 43-124 83-170 (195)
107 PF05938 Self-incomp_S1: Plant 24.5 1.4E+02 0.003 23.4 4.3 39 331-372 28-68 (110)
108 PRK15208 long polar fimbrial c 24.4 1.4E+02 0.0031 27.0 5.0 63 44-110 73-138 (228)
109 PF06355 Aegerolysin: Aegeroly 24.4 1.9E+02 0.0041 23.8 5.2 59 53-111 2-63 (131)
110 PRK15299 fimbrial chaperone pr 24.4 2.1E+02 0.0046 25.8 6.0 61 44-108 76-138 (227)
111 COG3354 FlaG Putative archaeal 24.0 3.6E+02 0.0078 22.6 6.5 53 53-109 70-130 (154)
112 PRK09926 putative chaperone pr 23.7 99 0.0022 28.4 3.8 64 44-110 81-149 (246)
113 PF12992 DUF3876: Domain of un 23.6 3.5E+02 0.0075 20.9 6.9 30 23-63 16-45 (95)
114 PF07228 SpoIIE: Stage II spor 23.4 1.9E+02 0.0041 24.7 5.5 55 47-102 67-126 (193)
115 COG3121 FimC P pilus assembly 22.7 1.5E+02 0.0033 26.9 4.8 64 44-111 80-146 (235)
116 COG0231 Efp Translation elonga 22.7 3.6E+02 0.0077 22.2 6.5 45 22-73 10-57 (131)
117 PF14524 Wzt_C: Wzt C-terminal 22.2 3.4E+02 0.0074 21.6 6.5 74 48-124 30-107 (142)
118 PRK15254 fimbrial chaperone pr 22.2 1.9E+02 0.0042 26.4 5.3 67 44-111 68-134 (239)
119 PF10989 DUF2808: Protein of u 22.0 2.8E+02 0.006 23.1 5.9 31 97-127 99-130 (146)
120 TIGR00037 eIF_5A translation i 21.5 4.6E+02 0.0099 21.5 7.1 44 23-73 14-61 (130)
121 TIGR00638 Mop molybdenum-pteri 21.0 1.4E+02 0.003 20.8 3.4 21 90-110 42-62 (69)
122 PF06865 DUF1255: Protein of u 20.2 4.2E+02 0.009 20.5 5.9 69 45-123 15-84 (94)
123 smart00331 PP2C_SIG Sigma fact 20.2 3.1E+02 0.0067 23.4 6.1 30 55-84 99-128 (193)
124 PRK15192 fimbrial chaperone Bc 20.1 2.2E+02 0.0047 26.0 5.2 64 44-111 80-143 (234)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=8.7e-71 Score=559.11 Aligned_cols=383 Identities=63% Similarity=1.133 Sum_probs=289.6
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEE
Q 038598 1 EWFNADPEAIINQSLQTGNGPNVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVV 80 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VI 80 (392)
||||++..+++...+..+..++.+|++|||||.+..+.|+....+.++|++||+|||||||+|+.+.+.|+||+|+|+||
T Consensus 143 Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VI 222 (539)
T TIGR03389 143 EWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVV 222 (539)
T ss_pred ccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEE
Confidence 89999999888776665555668899999999877788988778899999999999999999999999999999999999
Q ss_pred EeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccCC
Q 038598 81 EADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFKP 160 (392)
Q Consensus 81 a~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~p 160 (392)
|+||.+++|+.+++|.|++||||||+|++++.+ |+||||+.....+...+.+..+.|||+|.+..... .+.. +
T Consensus 223 a~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~--g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~----~p~~-~ 295 (539)
T TIGR03389 223 EVDATYTKPFKTKTIVIGPGQTTNVLLTADQSP--GRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSA----KPIL-P 295 (539)
T ss_pred EeCCcccCceEeCeEEecCCCEEEEEEECCCCC--ceEEEEEeccccCccCCCCcceEEEEEECCCCCCC----CCCC-C
Confidence 999999999999999999999999999999877 99999998764443223456789999998764321 1111 1
Q ss_pred CCCCCCCccccccccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccCCChhhh
Q 038598 161 SLPAINDTNFVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFALPSTALL 240 (392)
Q Consensus 161 ~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~p~~~~l 240 (392)
..+...+......+...++++....+|..+|..+++++++.+......... ..+...++..+.|++||++|..|++|+|
T Consensus 296 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~~p~l 374 (539)
T TIGR03389 296 TLPAYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPTTALL 374 (539)
T ss_pred CCCCCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCCcchh
Confidence 122222221111111233444322334344456677777666543321100 0111224566889999999998988988
Q ss_pred HhhhhccCCCcccCCCCCCCCcCCCCCCC----------CCCCeeecCCcEEEEc-ccC---CCCCCceeecCCceEEEE
Q 038598 241 QSYFFAKSKGVYTADFPQFPLHPFNYTGT----------PPNNTFVSNGTKALDT-SIL---GAESHPLHLHGYNVYVVG 306 (392)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----------~~~~~~~~~g~~v~~~-~~~---~~~~HP~HlHG~~F~Vl~ 306 (392)
++.+.+++ |.+..+++..+|..|++.+. +.+.+.++.|++|+.+ .+. ....||||||||+||||+
T Consensus 375 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg 453 (539)
T TIGR03389 375 QAHYFGIS-GVFTTDFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVG 453 (539)
T ss_pred hhhhcccC-CccccCCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEE
Confidence 87665543 55555566666666654432 1233567778877332 222 234899999999999999
Q ss_pred eccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCCCCCCCCCCC
Q 038598 307 QGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGELPNQKLPPPP 386 (392)
Q Consensus 307 ~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p 386 (392)
+|.|.|+.......+|+.||++||||.|++++|++|||++||||.|+|||||+||+..||+++|.+.++++..++++++|
T Consensus 454 ~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p 533 (539)
T TIGR03389 454 TGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPP 533 (539)
T ss_pred eccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCC
Confidence 99999987655557999999999999999999999999999999999999999999999999999988877888999999
Q ss_pred CCCCCC
Q 038598 387 SDLPKC 392 (392)
Q Consensus 387 ~~~~~c 392 (392)
..+|.|
T Consensus 534 ~~~~~c 539 (539)
T TIGR03389 534 SDLPSC 539 (539)
T ss_pred ccCCCC
Confidence 999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=2.5e-68 Score=537.64 Aligned_cols=376 Identities=26% Similarity=0.368 Sum_probs=279.3
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCceEEEcCCcCCCCCCC----CCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCce
Q 038598 1 EWFNADPEAIINQSLQTGNGPNVSEAYTFNGLPGPTYNCS----AKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHT 76 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~----~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~ 76 (392)
||||++...+ .+.+..+..++.+|++||||++...++|. +...++++|++||+|||||||++..+.+.|+||||+
T Consensus 170 DW~~~~~~~~-~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~ 248 (596)
T PLN00044 170 DWYARDHRAL-RRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHN 248 (596)
T ss_pred ccccCCHHHH-HHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCE
Confidence 8999997664 55566665566799999999975444553 344568999999999999999999999999999999
Q ss_pred EEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEecc-CCCCCcCCCcceEEEEEecCCCCCCCCCCC
Q 038598 77 LTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPY-FTGMGTFDNSTVAAILEYEAPSQDNSFRNR 155 (392)
Q Consensus 77 m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~-~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~ 155 (392)
|+|||+||.+++|+.++.|.|++||||||+|++++.+ +++||||+... ..+. .+++..+.|||+|.++..... .
T Consensus 249 mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~-~~~Y~i~a~~~~~~~~-~~~~~~~~AIl~Y~~~~~~~~---~ 323 (596)
T PLN00044 249 LLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNA-STDYYVVASARFVDAA-VVDKLTGVAILHYSNSQGPAS---G 323 (596)
T ss_pred EEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCC-CCceEEEEecccccCc-cccCcceeEEEEECCCCCCCC---C
Confidence 9999999999999999999999999999999999975 24899998753 2221 245678899999987532110 1
Q ss_pred CccCCCCCC-CCCccccccccccccccccCCCCCCCCCCcceEEEEEeccCc-ccCCCCCcccCCCCCeeeeeecceecc
Q 038598 156 TLFKPSLPA-INDTNFVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGA-NPCPKNQTCQGPNGTKFAAAVNNVSFA 233 (392)
Q Consensus 156 ~~~~p~~p~-~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~iNg~s~~ 233 (392)
+ + |..+. ..+......+...++++...+.+.+.|...++...+++.... ..+.....| . +++.|++||.+|.
T Consensus 324 ~-~-P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~-g~~~~s~Nnvsf~ 397 (596)
T PLN00044 324 P-L-PDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI---D-GKLRATLNEISYI 397 (596)
T ss_pred C-C-CCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc---C-CeEEEEECcccCC
Confidence 1 2 33332 444443333334455443333333344444444444433211 011000111 1 3678999999999
Q ss_pred CCChhhhHhhhhccCCCcccCCCCCCCCcCCCCCCCCCCCeeecCCcEEEEccc-CCCCCCceeecCCceEEEEeccCCC
Q 038598 234 LPSTALLQSYFFAKSKGVYTADFPQFPLHPFNYTGTPPNNTFVSNGTKALDTSI-LGAESHPLHLHGYNVYVVGQGFGNF 312 (392)
Q Consensus 234 ~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~HP~HlHG~~F~Vl~~g~g~~ 312 (392)
.|++|+|.+.+++++ |.|..++|..+|... ......+..++.+++|+.+-. .....||||||||+|+||++|.|.|
T Consensus 398 ~p~~p~L~a~~~~~~-gv~~~~fp~~pp~~~--~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~ 474 (596)
T PLN00044 398 APSTPLMLAQIFNVP-GVFKLDFPNHPMNRL--PKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLW 474 (596)
T ss_pred CCCCcchhhhhccCC-CcccCCCCCCCCccc--cccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCC
Confidence 999999987777665 788888877666311 111122345566777733211 1246899999999999999999999
Q ss_pred CCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCCC-CCCCCCCCCCCCC
Q 038598 313 DPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGELP-NQKLPPPPSDLPK 391 (392)
Q Consensus 313 ~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~-~~~~~~~p~~~~~ 391 (392)
++. ++..||+.||++||||.|+++||++|||++||||.|+|||||+.|+..||+++|.|.++.+. .+++++||.+++.
T Consensus 475 ~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~ 553 (596)
T PLN00044 475 TDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIF 553 (596)
T ss_pred CCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCc
Confidence 975 46689999999999999999999999999999999999999999999999999999988875 7899999999999
Q ss_pred C
Q 038598 392 C 392 (392)
Q Consensus 392 c 392 (392)
|
T Consensus 554 C 554 (596)
T PLN00044 554 C 554 (596)
T ss_pred c
Confidence 9
No 3
>PLN02792 oxidoreductase
Probab=100.00 E-value=5.1e-67 Score=525.96 Aligned_cols=365 Identities=22% Similarity=0.306 Sum_probs=266.9
Q ss_pred CCCCCCHHHHHHHHhcCCCCCC-CCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEE
Q 038598 1 EWFNADPEAIINQSLQTGNGPN-VSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTV 79 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~~~~-~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~V 79 (392)
||||++...+ .+.+..+...+ .+|++||||++.. ..+.|+|++||+|||||||+|..+.+.|+|+||+|+|
T Consensus 156 Dw~~~~~~~~-~~~~~~g~~~~~~~d~~liNG~~~~-------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tV 227 (536)
T PLN02792 156 DWYRRNHTTL-KKILDGGRKLPLMPDGVMINGQGVS-------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKL 227 (536)
T ss_pred ccccCCHHHH-HHHhhccCcCCCCCCEEEEeccCCC-------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEE
Confidence 8999997664 44555554333 8999999999641 1368999999999999999999999999999999999
Q ss_pred EEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccC
Q 038598 80 VEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFK 159 (392)
Q Consensus 80 Ia~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~ 159 (392)
||+||++++|..+++|.|++||||||+|++++.+ |+|||++.....+ .+..+.|||+|.++... .+..
T Consensus 228 I~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~-----~~~~- 295 (536)
T PLN02792 228 IEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPP--QNYSIVVSTRFIA----AKVLVSSTLHYSNSKGH-----KIIH- 295 (536)
T ss_pred EEeCCccCCCcceeEEEEccCceEEEEEEcCCCC--ceEEEEEEeccCC----CCCceEEEEEECCCCCC-----CCCC-
Confidence 9999999999999999999999999999999876 8999999864322 23578899999876421 1111
Q ss_pred CCCCCCCCccccccccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccCCChhh
Q 038598 160 PSLPAINDTNFVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFALPSTAL 239 (392)
Q Consensus 160 p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~p~~~~ 239 (392)
+..|..++......+...++.+...+.|.++|+..++...++++........... .++.+.|++||.+|..|++|+
T Consensus 296 p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iN~~s~~~p~~p~ 371 (536)
T PLN02792 296 ARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAAL----VKRKQRYAINGVSFVPSDTPL 371 (536)
T ss_pred CCCCCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccc----cCceeEEEECCcccCCCCCch
Confidence 2233333333322222222232222223334433333222221111100000001 113568999999999999999
Q ss_pred hHhhhhccCCCcccCC-CCCCCCcCCCCCCCCCCCeeecCCcEEEEc-ccCCCCCCceeecCCceEEEEeccCCCCCCCC
Q 038598 240 LQSYFFAKSKGVYTAD-FPQFPLHPFNYTGTPPNNTFVSNGTKALDT-SILGAESHPLHLHGYNVYVVGQGFGNFDPKND 317 (392)
Q Consensus 240 l~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~ 317 (392)
|.+.+++++ |.+..+ ++..+|..++. .....+..++.+++|+.+ .+.....||||||||+||||++|.|.|++. +
T Consensus 372 L~a~~~~~~-g~~~~~~~~~~p~~~~~~-~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~-~ 448 (536)
T PLN02792 372 KLADHFKIK-GVFKVGSIPDKPRRGGGM-RLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRA-S 448 (536)
T ss_pred hhhhhhccC-CCcCcccCccCCcccCCC-ccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcc-c
Confidence 988776665 666543 56555532221 111233456778877332 222456899999999999999999999874 4
Q ss_pred CCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCCCCCCCCCCCCCCCCC
Q 038598 318 PKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGELPNQKLPPPPSDLPKC 392 (392)
Q Consensus 318 ~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 392 (392)
+..||+.||++||||.|+++||++|||++||||.|+||||+.+|+..||..+|.|.++.+..+++++||.+++.|
T Consensus 449 ~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 449 RREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred ccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 668999999999999999999999999999999999999999999999999999999988889999999999999
No 4
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.8e-66 Score=518.63 Aligned_cols=379 Identities=45% Similarity=0.767 Sum_probs=313.2
Q ss_pred CCCCC-CHHHHHHHHhcCCCCCCCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEE
Q 038598 1 EWFNA-DPEAIINQSLQTGNGPNVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTV 79 (392)
Q Consensus 1 Dwyh~-~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~V 79 (392)
|||++ ...++..++...+..+..+|.++|||+++.++.| .++++|+|||+|||||||+|....+.|+|++|+|+|
T Consensus 168 dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltv 243 (563)
T KOG1263|consen 168 DWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTV 243 (563)
T ss_pred eeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEE
Confidence 89996 8888877655555555559999999999888999 689999999999999999999999999999999999
Q ss_pred EEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccC
Q 038598 80 VEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFK 159 (392)
Q Consensus 80 Ia~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~ 159 (392)
||+||.+++|..+++|.|+|||||||+|++++.+ ++|+|++..+.++.....+..+.++|+|.+.......+ .+..
T Consensus 244 Ve~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~--~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~-~~~~- 319 (563)
T KOG1263|consen 244 VEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSP--GDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEK-LPIY- 319 (563)
T ss_pred EEecceEEeeeeeceEEEcCCcEEEEEEeCCCCC--CcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCccc-Cccc-
Confidence 9999999999999999999999999999999998 79999999876643221278899999998843211110 1222
Q ss_pred CCCCCCCCccccccccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccCCChh-
Q 038598 160 PSLPAINDTNFVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFALPSTA- 238 (392)
Q Consensus 160 p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~p~~~- 238 (392)
+.+++..+...+..+...++.+....++.++|++.++...++++.....++... .++++.+++||+.||..|++|
T Consensus 320 ~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~ 395 (563)
T KOG1263|consen 320 PFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPS 395 (563)
T ss_pred ccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCch
Confidence 445555666667777778888877777888999999988888887776553221 356678999999999999875
Q ss_pred hhHhhhhccCCCcccCCCCCCCCcCCCCCC--CCCCCeeecCCcEE----EEcccCCCCCCceeecCCceEEEEeccCCC
Q 038598 239 LLQSYFFAKSKGVYTADFPQFPLHPFNYTG--TPPNNTFVSNGTKA----LDTSILGAESHPLHLHGYNVYVVGQGFGNF 312 (392)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~g~~v----~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 312 (392)
+|...+..++ +.+..+++..|+..+++.+ .+.+.+.++-++.| +|.+...+..||||||||+||||++|.|.|
T Consensus 396 ~l~~~~~~~~-~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~ 474 (563)
T KOG1263|consen 396 LLAAYFKNIP-GYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNW 474 (563)
T ss_pred hhhhhhccCC-ccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEeccccc
Confidence 4555555554 7788889988888788775 33455667777766 333334467799999999999999999999
Q ss_pred CCCCCC-CCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCCCCCCCCCCCCCCCC
Q 038598 313 DPKNDP-KKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGELPNQKLPPPPSDLPK 391 (392)
Q Consensus 313 ~~~~~~-~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~ 391 (392)
++..++ ..+|+.+|+.||||.|+||+|++|||++||||.|+||||+++|+..||.++|.|.++++...++.++|.+.+.
T Consensus 475 ~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~ 554 (563)
T KOG1263|consen 475 DPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPK 554 (563)
T ss_pred CcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCccc
Confidence 995555 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 038598 392 C 392 (392)
Q Consensus 392 c 392 (392)
|
T Consensus 555 c 555 (563)
T KOG1263|consen 555 C 555 (563)
T ss_pred c
Confidence 9
No 5
>PLN02991 oxidoreductase
Probab=100.00 E-value=5.5e-66 Score=517.82 Aligned_cols=359 Identities=23% Similarity=0.327 Sum_probs=258.7
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEE
Q 038598 1 EWFNADPEAIINQSLQTGNGPNVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVV 80 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VI 80 (392)
||||++..++... +..+..++.+|++|||||+. .++++|++||+|||||||+|+.+.+.|+|++|+|+||
T Consensus 168 DW~~~~~~~~~~~-~~~~~~~~~~d~~liNG~~~---------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVI 237 (543)
T PLN02991 168 DWYKTNHKDLRAQ-LDNGGKLPLPDGILINGRGS---------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLV 237 (543)
T ss_pred ceecCCHHHHHHH-hhcCCCCCCCCEEEEccCCC---------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEE
Confidence 8999998776543 44555567899999999963 3689999999999999999999999999999999999
Q ss_pred EeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccCC
Q 038598 81 EADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFKP 160 (392)
Q Consensus 81 a~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~p 160 (392)
|+||++++|..++.|.|++||||||+|++++.. ++||||+...... ....+.|||+|.++..... .+ . |
T Consensus 238 a~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~--~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~~~~---~~-~-p 306 (543)
T PLN02991 238 EVEGTHTIQTPFSSLDVHVGQSYSVLITADQPA--KDYYIVVSSRFTS----KILITTGVLHYSNSAGPVS---GP-I-P 306 (543)
T ss_pred EeCCccccceeeeEEEEcCCcEEEEEEECCCCC--CcEEEEEeeccCC----CCcceEEEEEeCCCCCCCC---CC-C-C
Confidence 999999999999999999999999999999987 8999999864321 2356899999987642110 01 1 2
Q ss_pred CCCCCCCcc--ccccccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccCCChh
Q 038598 161 SLPAINDTN--FVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFALPSTA 238 (392)
Q Consensus 161 ~~p~~~~~~--~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~p~~~ 238 (392)
..+...... ........|.+.. +.+.|...+....++++...........+ + +++.|++||.+|..|++|
T Consensus 307 ~~p~~~~~~~~~~~~~~~~l~p~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~-g~~~~~iN~~s~~~p~~p 378 (543)
T PLN02991 307 DGPIQLSWSFDQARAIKTNLTASG----PRPNPQGSYHYGKINITRTIRLANSAGNI---E-GKQRYAVNSASFYPADTP 378 (543)
T ss_pred CCCccccccccchhhhhhcccCCC----CCCCCCccccccccccceeEEEeeccccc---C-ceEEEEECCCccCCCCCC
Confidence 111111010 0001112232211 11222221111111111100000000011 2 356899999999989999
Q ss_pred hhHhhhhccCCCcccCC-CCCCCCcCCCCCCCCCCCeeecCCcEEEE-cccCCCCCCceeecCCceEEEEeccCCCCCCC
Q 038598 239 LLQSYFFAKSKGVYTAD-FPQFPLHPFNYTGTPPNNTFVSNGTKALD-TSILGAESHPLHLHGYNVYVVGQGFGNFDPKN 316 (392)
Q Consensus 239 ~l~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~ 316 (392)
+|.+.+++++ |.|..+ ++..++....+. ......++.++.|+. +.+.....||||||||+||||++|.|.|++.
T Consensus 379 ~L~~~~~~~~-g~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~- 454 (543)
T PLN02991 379 LKLADYFKIA-GVYNPGSIPDQPTNGAIFP--VTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAA- 454 (543)
T ss_pred hhhhhhhccc-CccccccccccCCCCcccc--CCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcc-
Confidence 9887776554 666544 333333110011 122345567777633 2223456899999999999999999999976
Q ss_pred CCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCCCCCCCCCCCCCCCCC
Q 038598 317 DPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGELPNQKLPPPPSDLPKC 392 (392)
Q Consensus 317 ~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 392 (392)
++..+|+.||++||||.|+++||++|||++||||.|+|||||..|+..||..++.|.++.+..++++++|.++|.|
T Consensus 455 ~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 455 SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 5668999999999999999999999999999999999999999999999999999999998899999999999999
No 6
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.1e-65 Score=516.57 Aligned_cols=364 Identities=25% Similarity=0.349 Sum_probs=259.5
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEE
Q 038598 1 EWFNADPEAIINQSLQTGNGPNVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVV 80 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VI 80 (392)
||||++..++. ..+..+...+.+|++||||+++..+. ...+.++|++||+|||||||+|+...+.|+||||+|+||
T Consensus 167 Dw~~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVI 242 (552)
T PLN02354 167 DWYTKSHTALK-KFLDSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLV 242 (552)
T ss_pred eeccCCHHHHH-HHHhcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEE
Confidence 89999977764 44555555567999999999753221 235789999999999999999999999999999999999
Q ss_pred EeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccCC
Q 038598 81 EADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFKP 160 (392)
Q Consensus 81 a~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~p 160 (392)
|+||++++|..++.|.|++||||||+|++++.+ |+|||++...... .+....|||+|.++.... .+.. |
T Consensus 243 a~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~--g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~~~----~~~~-p 311 (552)
T PLN02354 243 EMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAP--KDYYMVASTRFLK----KVLTTTGIIRYEGGKGPA----SPEL-P 311 (552)
T ss_pred EeCCcccCCcceeEEEEccCceEEEEEECCCCC--CcEEEEEeccccC----CCccEEEEEEECCCCCCC----CCCC-C
Confidence 999999999999999999999999999999877 8999998753221 345789999998764211 1111 2
Q ss_pred CCCCCC--CccccccccccccccccCCCCCCCC----CCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccC
Q 038598 161 SLPAIN--DTNFVANFSSKFRSLANAQFPANVP----QTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFAL 234 (392)
Q Consensus 161 ~~p~~~--~~~~~~~~~~~l~~l~~~~~p~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~ 234 (392)
..+... .......+...+.+....+.+.... ...++++.+..... .+ + +.+.|++||.+|..
T Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~-g~~~~~iNn~s~~~ 379 (552)
T PLN02354 312 EAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS--------KV---D-GKLRYALNGVSHVD 379 (552)
T ss_pred CCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc--------cC---C-ceEEEEECCccCCC
Confidence 111100 0000001111122211111110000 11233333332110 01 2 25689999999999
Q ss_pred CChhhhHhhhhccCCCcccCC-CCCCCCcCCCCCCCCCCCeeecCCcEEEEc-ccCCCCCCceeecCCceEEEEeccCCC
Q 038598 235 PSTALLQSYFFAKSKGVYTAD-FPQFPLHPFNYTGTPPNNTFVSNGTKALDT-SILGAESHPLHLHGYNVYVVGQGFGNF 312 (392)
Q Consensus 235 p~~~~l~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~HP~HlHG~~F~Vl~~g~g~~ 312 (392)
|++|+|.+.++++..|.++.+ ++..+|..++......+...++.+++|+.+ .+.....||||||||+||||++|.|.|
T Consensus 380 p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~ 459 (552)
T PLN02354 380 PETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTW 459 (552)
T ss_pred CCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCC
Confidence 999988876655444555433 333344322211111233556778877332 223456899999999999999999999
Q ss_pred CCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCCCCCCCCCCCCCCCCC
Q 038598 313 DPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGELPNQKLPPPPSDLPKC 392 (392)
Q Consensus 313 ~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 392 (392)
++. .+..+|+.||++||||.|+++||++|||++||||+|+|||||+.|+..||.++|.|.++.+..++++.+|.+.+.|
T Consensus 460 ~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 460 TPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred Ccc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 875 3568999999999999999999999999999999999999999999999999999988877778888899999999
No 7
>PLN02835 oxidoreductase
Probab=100.00 E-value=5.6e-65 Score=512.79 Aligned_cols=354 Identities=24% Similarity=0.343 Sum_probs=253.6
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEE
Q 038598 1 EWFNADPEAIINQSLQTGNGPNVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVV 80 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VI 80 (392)
||||++..++.. .+..+...+.+|++||||+.. +.++|++||+|||||||+|+.+.+.|+||||+|+||
T Consensus 169 Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI 237 (539)
T PLN02835 169 DWYKTSHKTLQQ-RLDSGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLV 237 (539)
T ss_pred ccccCCHHHHHH-HhhcCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEE
Confidence 899999877644 455555667899999999973 689999999999999999999999999999999999
Q ss_pred EeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccCC
Q 038598 81 EADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFKP 160 (392)
Q Consensus 81 a~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~p 160 (392)
|+||++++|..++.|.|++||||||+|++++.+ |+|||++.....+ ......|||+|.+..... .+.+ |
T Consensus 238 ~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~--g~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~----~~~~-p 306 (539)
T PLN02835 238 EVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSP--KDYYIVASTRFTR----QILTATAVLHYSNSRTPA----SGPL-P 306 (539)
T ss_pred EECCccCCCceeeEEEECcCceEEEEEEcCCCC--CcEEEEEEccccC----CCcceEEEEEECCCCCCC----CCCC-C
Confidence 999999999999999999999999999999876 8999998653221 235689999998753211 1111 2
Q ss_pred CCCCC---CCccccccccccccccccCCCCCCC----CCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceecc
Q 038598 161 SLPAI---NDTNFVANFSSKFRSLANAQFPANV----PQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFA 233 (392)
Q Consensus 161 ~~p~~---~~~~~~~~~~~~l~~l~~~~~p~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~ 233 (392)
..|.. .+..........+.+....+.+... ....++++.+..... . .+| ...|++||++|.
T Consensus 307 ~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~g-~~~w~iN~~s~~ 374 (539)
T PLN02835 307 ALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP--------L---ING-KQRYAVNGVSYV 374 (539)
T ss_pred CCCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEecccc--------c---cCC-eEEEEECCcccC
Confidence 11111 0110000111112221111111000 011233333322110 0 122 468999999999
Q ss_pred CCChhhhHhhhhccCCCcccCCC-CCCCCcCCCCCCCCCCCeeecCCcEEEE-cccCCCCCCceeecCCceEEEEeccCC
Q 038598 234 LPSTALLQSYFFAKSKGVYTADF-PQFPLHPFNYTGTPPNNTFVSNGTKALD-TSILGAESHPLHLHGYNVYVVGQGFGN 311 (392)
Q Consensus 234 ~p~~~~l~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~g~~v~~-~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 311 (392)
.|++|+|.+.+++.+ +.|+.+. ...++....+ .+.+...++.+++|+. +.+.....||||||||+||||++|.|.
T Consensus 375 ~p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~ 451 (539)
T PLN02835 375 NSDTPLKLADYFGIP-GVFSVNSIQSLPSGGPAF--VATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQ 451 (539)
T ss_pred CCCCChhhhhhhcCC-CccccCccccCCCCCccc--cCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCC
Confidence 888888877665443 5555331 1111110000 0122345677887733 222345689999999999999999999
Q ss_pred CCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCCCCCCCCCCCCCCCC
Q 038598 312 FDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGELPNQKLPPPPSDLPK 391 (392)
Q Consensus 312 ~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~ 391 (392)
|++. ....+|+.||++||||.|++++|++|||++||||.|+|||||++|+..||+++|.|.++.+..++++++|.++|.
T Consensus 452 ~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~ 530 (539)
T PLN02835 452 WTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALL 530 (539)
T ss_pred CCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccc
Confidence 9865 345689999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred C
Q 038598 392 C 392 (392)
Q Consensus 392 c 392 (392)
|
T Consensus 531 C 531 (539)
T PLN02835 531 C 531 (539)
T ss_pred c
Confidence 9
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=3e-64 Score=506.20 Aligned_cols=357 Identities=26% Similarity=0.395 Sum_probs=248.7
Q ss_pred CCCCCCHHHHHHHHhcCCCCCCCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEE
Q 038598 1 EWFNADPEAIINQSLQTGNGPNVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVV 80 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VI 80 (392)
||||.+...+. ..+..+...+.+|++||||++. ..++++|++||+|||||||+|+.+.+.|+||||+|+||
T Consensus 166 Dw~~~~~~~~~-~~~~~g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVI 236 (545)
T PLN02168 166 DWFYADHTVMR-ASLDNGHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLV 236 (545)
T ss_pred ecCCCCHHHHH-hhhhcCCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEE
Confidence 89999865543 3344444456899999999963 13689999999999999999999999999999999999
Q ss_pred EeCCccccceEEeEEEecCCCeEEEEEEcCCCCCC--CceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCcc
Q 038598 81 EADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPN--ASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLF 158 (392)
Q Consensus 81 a~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~ 158 (392)
|+||++++|..+++|.|++||||||+|++++...| ++||||+.....+ ....+.|||+|.++..... .| +
T Consensus 237 a~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~---~p-~ 308 (545)
T PLN02168 237 ETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD----AYLGGVALIRYPNSPLDPV---GP-L 308 (545)
T ss_pred EECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC----CCcceEEEEEECCCCCCCC---CC-C
Confidence 99999999999999999999999999999876544 4899999874332 2357889999987543211 11 1
Q ss_pred CCCCCCCCCccccccccccccccccCCCCCCCCCC--------cceEEEEEeccCcccCCCCCcccCCCCCeeeeeecce
Q 038598 159 KPSLPAINDTNFVANFSSKFRSLANAQFPANVPQT--------VDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNV 230 (392)
Q Consensus 159 ~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~ 230 (392)
+..|...+..+...+..+++....+..+.+.|.. .++++.+.... . .+ + +...|++||.
T Consensus 309 -p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~------~~---~-g~~~~~iN~~ 375 (545)
T PLN02168 309 -PLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M------LS---S-GKLRYTINGV 375 (545)
T ss_pred -CCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccc--c------cc---C-ceEEEEECCC
Confidence 2222222222221111112111111111112211 12222221100 0 01 2 3578999999
Q ss_pred eccCCChhhhHhhhhccCCCccc-CCCCCCCCcCC-CCCCCCCCCeeecCCcEEEEc-ccCCCCCCceeecCCceEEEEe
Q 038598 231 SFALPSTALLQSYFFAKSKGVYT-ADFPQFPLHPF-NYTGTPPNNTFVSNGTKALDT-SILGAESHPLHLHGYNVYVVGQ 307 (392)
Q Consensus 231 s~~~p~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~-~~~~~~~~~~~~~~g~~v~~~-~~~~~~~HP~HlHG~~F~Vl~~ 307 (392)
+|..|++|+|.+.+++++ +.+. .+++..++... .+. .....++.|++|+.+ .+.....||||||||+||||++
T Consensus 376 s~~~p~~P~l~~~~~~~~-~~~~~~~~~~~p~~~~~~~~---~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~ 451 (545)
T PLN02168 376 SFVYPGTPLKLVDHFQLN-DTIIPGMFPVYPSNKTPTLG---TSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGY 451 (545)
T ss_pred ccCCCCCchhhhhhcccc-cccccCCCccCCCcCccccC---ceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEEC
Confidence 999999888876655432 2222 22333332100 010 122456778877332 2223568999999999999999
Q ss_pred ccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCCC------CCCC
Q 038598 308 GFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGEL------PNQK 381 (392)
Q Consensus 308 g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~~------~~~~ 381 (392)
|.|.|++.. +..+|+.||++||||.|+++||++|||++||||.|+|||||++|+..||+++|+|.++.+ ..++
T Consensus 452 g~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~ 530 (545)
T PLN02168 452 GFGAWSESK-KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRD 530 (545)
T ss_pred CCCCCCccc-cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCcccccccc
Confidence 999998753 457999999999999999999999999999999999999999999999999998864433 2567
Q ss_pred CCCCCCCCCCC
Q 038598 382 LPPPPSDLPKC 392 (392)
Q Consensus 382 ~~~~p~~~~~c 392 (392)
++++|.+++.|
T Consensus 531 ~~~~P~~~~~c 541 (545)
T PLN02168 531 ENPIPGNVIRC 541 (545)
T ss_pred ccCCChhhccc
Confidence 88999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.6e-63 Score=507.15 Aligned_cols=363 Identities=30% Similarity=0.455 Sum_probs=251.0
Q ss_pred CCCCCCHHHHHHHHhcCC-CCCCCCceEEEcCCcCCCCCCC----------------C-CCccEEEEeCCCEEEEEEEec
Q 038598 1 EWFNADPEAIINQSLQTG-NGPNVSEAYTFNGLPGPTYNCS----------------A-KDTYKLKVKPGKTYMLRLINT 62 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~-~~~~~~d~~liNG~~~~~~~~~----------------~-~~~~~~~v~~G~~yRlRlINa 62 (392)
||||++..+++....... .+...+|++||||++. +.|. + ...+.++|++||+|||||||+
T Consensus 164 Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa 241 (566)
T PLN02604 164 DWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGR--YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSL 241 (566)
T ss_pred ccccCCHHHHHHhhccCCCccCCCCCceEEcCCCC--CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEec
Confidence 899999888766533211 2234689999999974 4442 1 134589999999999999999
Q ss_pred CCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEE
Q 038598 63 ALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILE 142 (392)
Q Consensus 63 ~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~ 142 (392)
|+.+.++|+||+|+|+|||+||++|+|+.+++|.|++||||||+|++++.+ +++||||+.....+ .+...+.|||+
T Consensus 242 ~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~-~~~y~ira~~~~~~---~~~~~~~aIL~ 317 (566)
T PLN02604 242 TALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDP-SRNYWVTTSVVSRN---NTTPPGLAIFN 317 (566)
T ss_pred cccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCC-CCCEEEEEecccCC---CCCcceeEEEE
Confidence 999999999999999999999999999999999999999999999998865 36899998764332 13467899999
Q ss_pred ecCCCCCCCCCCCCccCCCCCCCCCccccccccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCe
Q 038598 143 YEAPSQDNSFRNRTLFKPSLPAINDTNFVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTK 222 (392)
Q Consensus 143 y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 222 (392)
|.+...... .+..++..+.+++..........+..+.. .+...+...++++.+...... .++.
T Consensus 318 Y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~~~~ 380 (566)
T PLN02604 318 YYPNHPRRS---PPTVPPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------VNGY 380 (566)
T ss_pred ECCCCCCCC---CCCCCCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------cCCe
Confidence 986432110 11110111112111101000011111111 011123345666655332211 1134
Q ss_pred eeeeecceeccCCChhhhHhhhhccCCCcccCCCC-CCCC-cCCCCC-------C-CCCCCeeecCCcEEEEc-ccC---
Q 038598 223 FAAAVNNVSFALPSTALLQSYFFAKSKGVYTADFP-QFPL-HPFNYT-------G-TPPNNTFVSNGTKALDT-SIL--- 288 (392)
Q Consensus 223 ~~~~iNg~s~~~p~~~~l~~~~~~~~~~~~~~~~~-~~~p-~~~~~~-------~-~~~~~~~~~~g~~v~~~-~~~--- 288 (392)
+.|++|+.+|..|+.|+|.+.+... ++.++.+.+ ..++ ..|+.. . .+.+.+.++.|++|+.+ .+.
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~ 459 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENL-TGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTM 459 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcC-CCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccc
Confidence 6899999999988888777655432 255542211 0000 001100 0 01123567888887332 111
Q ss_pred ---CCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcC
Q 038598 289 ---GAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWG 365 (392)
Q Consensus 289 ---~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~G 365 (392)
....||||||||+||||++|.|.|++..+...+|+.||++||||.|++++|++|||++||||.|+|||||+||+..|
T Consensus 460 ~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~G 539 (566)
T PLN02604 460 NANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMG 539 (566)
T ss_pred cCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcC
Confidence 24579999999999999999999988766678999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCCCCCCCCCCCCCCCCCC
Q 038598 366 LRMAWIVLDGELPNQKLPPPPSDLPKC 392 (392)
Q Consensus 366 m~~~~~v~~~~~~~~~~~~~p~~~~~c 392 (392)
|+++|.+. .++++.+|.+++.|
T Consensus 540 M~~v~~e~-----~~~~~~~p~~~~~C 561 (566)
T PLN02604 540 MGVVFEEG-----IERVGKLPSSIMGC 561 (566)
T ss_pred CEEEEeeC-----hhhccCCCCCcCcc
Confidence 99999753 35677889999999
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=5.3e-63 Score=502.45 Aligned_cols=362 Identities=27% Similarity=0.412 Sum_probs=243.4
Q ss_pred CCCCCCHHHHHHHHhcC-CCCCCCCceEEEcCCcCCCCCCC-------------------CC-CccEEEEeCCCEEEEEE
Q 038598 1 EWFNADPEAIINQSLQT-GNGPNVSEAYTFNGLPGPTYNCS-------------------AK-DTYKLKVKPGKTYMLRL 59 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~-~~~~~~~d~~liNG~~~~~~~~~-------------------~~-~~~~~~v~~G~~yRlRl 59 (392)
||||++..+........ ....+.+|++||||++. +.|. +. ...+|+|++||+|||||
T Consensus 163 Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRi 240 (574)
T PLN02191 163 DWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQ--FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRL 240 (574)
T ss_pred ccccCChHHHHHhhccCCCCcCCCCCceEECCCCC--CCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEE
Confidence 89999876654432211 12335789999999974 4442 11 22379999999999999
Q ss_pred EecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEE
Q 038598 60 INTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAA 139 (392)
Q Consensus 60 INa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~a 139 (392)
||+|+.+.++|+||+|+|+|||+||++++|+.+++|.|++||||||+|++++.+ +++||||+.....+. ......|
T Consensus 241 INa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~-~~~y~ira~~~~~~~---~~~~~~a 316 (574)
T PLN02191 241 ASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDP-SQNYYISVGVRGRKP---NTTQALT 316 (574)
T ss_pred EecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCC-CCCEEEEEEccccCC---CCCCceE
Confidence 999999999999999999999999999999999999999999999999999865 268999997643321 2334679
Q ss_pred EEEecCCCCCCCCCCCCccCCCCCCCCCccccccccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCC
Q 038598 140 ILEYEAPSQDNSFRNRTLFKPSLPAINDTNFVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPN 219 (392)
Q Consensus 140 iL~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (392)
||+|.+...+..+. .+ . +..|.+.+......+. ...+.....+.+.....++++++..... .
T Consensus 317 il~Y~~~~~~~~p~-~~-~-~~~p~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------------~ 378 (574)
T PLN02191 317 ILNYVTAPASKLPS-SP-P-PVTPRWDDFERSKNFS--KKIFSAMGSPSPPKKYRKRLILLNTQNL-------------I 378 (574)
T ss_pred EEEECCCCCCCCCC-CC-C-CCCCcccccchhhccc--ccccccccCCCCCCcccceEEEecccce-------------e
Confidence 99997754321110 00 0 1122222221111111 1111110011111122355554432110 1
Q ss_pred CCeeeeeecceeccCCChhhhHhhhhccCCCcccCCCCCCC-CcCCCCCC--------CCCCCeeecCCcEEEEc-ccC-
Q 038598 220 GTKFAAAVNNVSFALPSTALLQSYFFAKSKGVYTADFPQFP-LHPFNYTG--------TPPNNTFVSNGTKALDT-SIL- 288 (392)
Q Consensus 220 g~~~~~~iNg~s~~~p~~~~l~~~~~~~~~~~~~~~~~~~~-p~~~~~~~--------~~~~~~~~~~g~~v~~~-~~~- 288 (392)
.+...|++||.+|..|..|+|.+.+.+.. +.++.+.+... +..|+... .+.+.+.++.|++|+.+ .+.
T Consensus 379 ~~~~~~~~n~~s~~~p~~P~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~ 457 (574)
T PLN02191 379 DGYTKWAINNVSLVTPATPYLGSVKYNLK-LGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNAN 457 (574)
T ss_pred CCeEEEEECcccCcCCCcchHHHHhhccC-cccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCC
Confidence 12457999999999888887776544322 33333322111 11111100 11123456778877332 211
Q ss_pred -----CCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhh
Q 038598 289 -----GAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLS 363 (392)
Q Consensus 289 -----~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~ 363 (392)
....||||||||+||||++|.|.|+++.+...+|+.||++|||+.|+++||++|||++||||.|+|||||+||+.
T Consensus 458 ~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~ 537 (574)
T PLN02191 458 VLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLH 537 (574)
T ss_pred cccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhh
Confidence 256899999999999999999999975444579999999999999999999999999999999999999999999
Q ss_pred cCcceEEEEecCCCCCCCCCCCCCCCCCC
Q 038598 364 WGLRMAWIVLDGELPNQKLPPPPSDLPKC 392 (392)
Q Consensus 364 ~Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 392 (392)
.||+++|... .+.++.+|..++.|
T Consensus 538 ~Gm~~~~~e~-----~~~~~~~p~~~~~C 561 (574)
T PLN02191 538 MGMGVVFAEG-----LNRIGKIPDEALGC 561 (574)
T ss_pred cCCEEEEecC-----hhhccCCCcchhhh
Confidence 9999999642 23444578888988
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=7.3e-63 Score=500.90 Aligned_cols=362 Identities=30% Similarity=0.449 Sum_probs=248.8
Q ss_pred CCCCCCHHHHHHHHhcCC-CCCCCCceEEEcCCcCCCCCCC------------------CC-CccEEEEeCCCEEEEEEE
Q 038598 1 EWFNADPEAIINQSLQTG-NGPNVSEAYTFNGLPGPTYNCS------------------AK-DTYKLKVKPGKTYMLRLI 60 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~-~~~~~~d~~liNG~~~~~~~~~------------------~~-~~~~~~v~~G~~yRlRlI 60 (392)
||||+...+++....... .....+|++||||++. +.|. +. ....++|++|++||||||
T Consensus 141 Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRli 218 (541)
T TIGR03388 141 DWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQ--FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIA 218 (541)
T ss_pred cccCCCHHHHHhhcccCCCcCCCCCcceEECCCCC--CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEE
Confidence 899999877655432221 2235689999999964 3442 11 234689999999999999
Q ss_pred ecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEE
Q 038598 61 NTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAI 140 (392)
Q Consensus 61 Na~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~ai 140 (392)
|+|+.+.+.|+||+|+|+|||+||++++|+.+++|.|++||||||+|++++.+ +++||||+.....+ .....++||
T Consensus 219 Na~~~~~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~-~~~y~ira~~~~~~---~~~~~~~ai 294 (541)
T TIGR03388 219 STTALAALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDP-SRNYWISVGVRGRK---PNTPPGLTV 294 (541)
T ss_pred cccccceEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCC-CCcEEEEEecccCC---CCCccEEEE
Confidence 99999999999999999999999999999999999999999999999998765 26899999864432 234568899
Q ss_pred EEecCCCCCCCCCCCCccCCCCCCCCCccccccccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCC
Q 038598 141 LEYEAPSQDNSFRNRTLFKPSLPAINDTNFVANFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNG 220 (392)
Q Consensus 141 L~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 220 (392)
|+|.+...... .+...+..+.+.+......+ .+..+.....+ ..+..+++++++...... ..
T Consensus 295 L~Y~~~~~~~~---p~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~ 356 (541)
T TIGR03388 295 LNYYPNSPSRL---PPTPPPVTPAWDDFDRSKAF--SLAIKAAMGSP-KPPETSDRRIVLLNTQNK------------IN 356 (541)
T ss_pred EEECCCCCCCC---CCCCCCCCCCccccchhhcc--chhhhccccCC-CCCCCCCcEEEEeccCcc------------cC
Confidence 99987543211 00000222222222111101 11111110111 123456777655332110 11
Q ss_pred CeeeeeecceeccCCChhhhHhhhhccCCCcccCCCC-CCCCcCCCCC--------CCCCCCeeecCCcEEEEc-ccC--
Q 038598 221 TKFAAAVNNVSFALPSTALLQSYFFAKSKGVYTADFP-QFPLHPFNYT--------GTPPNNTFVSNGTKALDT-SIL-- 288 (392)
Q Consensus 221 ~~~~~~iNg~s~~~p~~~~l~~~~~~~~~~~~~~~~~-~~~p~~~~~~--------~~~~~~~~~~~g~~v~~~-~~~-- 288 (392)
+...|++|+.+|..|..|+|...+.++. +.++.+.+ ...+..|+.. ..+.+.+.++.|++|+.+ .+.
T Consensus 357 ~~~~~~~n~~s~~~p~~p~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~ 435 (541)
T TIGR03388 357 GYTKWAINNVSLTLPHTPYLGSLKYNLL-NAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANT 435 (541)
T ss_pred ceEEEEECcccCCCCCccHHHHHhhcCC-ccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCcc
Confidence 3457999999999888887776554321 22222111 0001111100 011233567788887332 111
Q ss_pred ----CCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhc
Q 038598 289 ----GAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSW 364 (392)
Q Consensus 289 ----~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~ 364 (392)
....||||||||+||||++|.|.|+++.+...+|+.||++||||.|++++|++|||++||||.|+|||||+||+..
T Consensus 436 ~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~ 515 (541)
T TIGR03388 436 LNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHM 515 (541)
T ss_pred ccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhc
Confidence 1457999999999999999999998765556899999999999999999999999999999999999999999999
Q ss_pred CcceEEEEecCCCCCCCCCCCCCCCCCC
Q 038598 365 GLRMAWIVLDGELPNQKLPPPPSDLPKC 392 (392)
Q Consensus 365 Gm~~~~~v~~~~~~~~~~~~~p~~~~~c 392 (392)
||+++|.+. .++++.+|..++.|
T Consensus 516 GM~~~~~e~-----~~~~~~~P~~~~~C 538 (541)
T TIGR03388 516 GMGVVFAEG-----VEKVGKLPKEALGC 538 (541)
T ss_pred ccEEEEecc-----ccccCCCCccccCC
Confidence 999999653 35677799999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=6.5e-59 Score=470.77 Aligned_cols=350 Identities=25% Similarity=0.403 Sum_probs=238.5
Q ss_pred CCCCCCHHHHHHHHhcCC-CCCCCCceEEEcCCcCCCC---CCCC---CCccEEEEeCCCEEEEEEEecCCCCeEEEEEc
Q 038598 1 EWFNADPEAIINQSLQTG-NGPNVSEAYTFNGLPGPTY---NCSA---KDTYKLKVKPGKTYMLRLINTALNDELFFSIA 73 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~-~~~~~~d~~liNG~~~~~~---~~~~---~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id 73 (392)
||||+...++....+... .+.+.+|++|||||++... .+++ ...+.++|++||+|||||||+|+.+.+.|+||
T Consensus 147 Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~id 226 (538)
T TIGR03390 147 DFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIE 226 (538)
T ss_pred CCCCCCHHHHHhhhhccCCccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEEC
Confidence 899999988765544322 2345689999999965321 0011 13578999999999999999999999999999
Q ss_pred Cce-EEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCC-----CCceEEEEeccCCCCCcCCCcceEEEEEecCCC
Q 038598 74 NHT-LTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPP-----NASFFMLARPYFTGMGTFDNSTVAAILEYEAPS 147 (392)
Q Consensus 74 ~h~-m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~-----~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~ 147 (392)
+|+ |+|||+||++++|+.++.|.|++||||||+|++++... .++||||+.....+ +...+.|||+|.+..
T Consensus 227 gH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~----~~~~~~aiL~Y~~~~ 302 (538)
T TIGR03390 227 DHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP----KVYRGYAVLRYRSDK 302 (538)
T ss_pred CCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC----CcceEEEEEEeCCCC
Confidence 999 99999999999999999999999999999999997631 27999999864322 235689999997653
Q ss_pred CCCCCCCCCccCCCCCCCCC-ccccccccccccccccCCCC-CCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeee
Q 038598 148 QDNSFRNRTLFKPSLPAIND-TNFVANFSSKFRSLANAQFP-ANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAA 225 (392)
Q Consensus 148 ~~~~~~~~~~~~p~~p~~~~-~~~~~~~~~~l~~l~~~~~p-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 225 (392)
... .+.. +..+.... ..+.......|.++.....+ .+.+..+++++.+++.+... ...+...|
T Consensus 303 ~~~----~~~~-p~~~~~~~~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~----------~~~g~~~~ 367 (538)
T TIGR03390 303 ASK----LPSV-PETPPLPLPNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVD----------PLNGRVAW 367 (538)
T ss_pred CCC----CCCC-CCCCCCCccCcchhhhheeeEecCccccCCCCCCCcCceEEEEEcccccc----------ccCCeEEE
Confidence 221 1111 11111100 01110111133343221111 11234567887777664321 11235689
Q ss_pred eecceeccC--CChhhhHhhhhccCCCccc-CCCCCCCCcCCCCCCCCCCCeeecCCcEEEEc-ccC--------CCCCC
Q 038598 226 AVNNVSFAL--PSTALLQSYFFAKSKGVYT-ADFPQFPLHPFNYTGTPPNNTFVSNGTKALDT-SIL--------GAESH 293 (392)
Q Consensus 226 ~iNg~s~~~--p~~~~l~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~-~~~--------~~~~H 293 (392)
++||.+|.. |+.|+|...+.+ +... ..+.. .+..+.+. .....+.++.|++|+.+ .+. ....|
T Consensus 368 ~~N~~s~~~~~~~~P~L~~~~~~---~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~H 442 (538)
T TIGR03390 368 LQNGLSWTESVRQTPYLVDIYEN---GLPATPNYTA-ALANYGFD-PETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTH 442 (538)
T ss_pred EECCcccCCCCCCCchHHHHhcC---CCCcCCCccc-ccccCCcC-cCceEEEcCCCCEEEEEEECCcccccCCCCCCCC
Confidence 999999985 677877754432 1000 00000 00000010 00122456778877322 111 24789
Q ss_pred ceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeC----------CCcEEEEEEEeCCceeeEEeecchhhhh
Q 038598 294 PLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVP----------SGGWVAIRFLADNPGVWFMHCHFDVHLS 363 (392)
Q Consensus 294 P~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~----------~~~~~~ir~~~dnpG~w~~HCHi~~H~~ 363 (392)
|||||||+||||++|.|.|++..+...+|+.||++|||+.|+ +++|++|||++||||.|+|||||+||+.
T Consensus 443 P~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~ 522 (538)
T TIGR03390 443 PFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMV 522 (538)
T ss_pred CeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhh
Confidence 999999999999999999987654457888999999999996 7899999999999999999999999999
Q ss_pred cCcceEEEEec
Q 038598 364 WGLRMAWIVLD 374 (392)
Q Consensus 364 ~Gm~~~~~v~~ 374 (392)
.||+++|.|.+
T Consensus 523 ~Gm~~~~~~~~ 533 (538)
T TIGR03390 523 MGMQTVWVFGD 533 (538)
T ss_pred ccceEEEEeCC
Confidence 99999999864
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.6e-43 Score=358.62 Aligned_cols=259 Identities=25% Similarity=0.354 Sum_probs=178.8
Q ss_pred eEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEE
Q 038598 26 AYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNV 105 (392)
Q Consensus 26 ~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydV 105 (392)
.+||||+.. ...+++++++|++|||||||+|+.+.++|+|++|+|+|||+||++|+|+.++.|.|++||||||
T Consensus 248 ~~LiNG~~~-------~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDV 320 (587)
T TIGR01480 248 TYLMNGTTP-------AGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDV 320 (587)
T ss_pred eEEEcCccC-------CCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEE
Confidence 378888752 1235799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccCCC-CCCCCCccc-c---------ccc
Q 038598 106 LLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFKPS-LPAINDTNF-V---------ANF 174 (392)
Q Consensus 106 lv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~p~-~p~~~~~~~-~---------~~~ 174 (392)
+|++++. |.|+|++..... .....++|++......+ .|.+.+. .....+... . ...
T Consensus 321 lV~~~~~---g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~----~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 387 (587)
T TIGR01480 321 IVEPTGD---DAFTIFAQDSDR------TGYARGTLAVRLGLTAP----VPALDPRPLLTMKDMGMGGMHHGMDHSKMSM 387 (587)
T ss_pred EEecCCC---ceEEEEEEecCC------CceEEEEEecCCCCCCC----CCCCCCccccChhhccccccccccccccccc
Confidence 9998643 799999876432 24677888876542111 1111110 000000000 0 000
Q ss_pred --------------------------------------------------------------------cccccccccCCC
Q 038598 175 --------------------------------------------------------------------SSKFRSLANAQF 186 (392)
Q Consensus 175 --------------------------------------------------------------------~~~l~~l~~~~~ 186 (392)
..+|+.+ .
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~----~ 463 (587)
T TIGR01480 388 GGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSL----F 463 (587)
T ss_pred CcccccCccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccc----c
Confidence 0000000 0
Q ss_pred CCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccCCChhhhHhhhhccCCCcccCCCCCCCCcCCCC
Q 038598 187 PANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFALPSTALLQSYFFAKSKGVYTADFPQFPLHPFNY 266 (392)
Q Consensus 187 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~ 266 (392)
+...+..+++.+.+.+.. +-.++.|+|||..|.. .++
T Consensus 464 ~~~~~~~p~r~~~~~L~g--------------~m~~~~wtiNG~~~~~------------------------~~p----- 500 (587)
T TIGR01480 464 PPPDGRAPGREIELHLTG--------------NMERFAWSFDGEAFGL------------------------KTP----- 500 (587)
T ss_pred cccCcCCCCceEEEEEcC--------------CCceeEEEECCccCCC------------------------CCc-----
Confidence 000011233333333221 1135679999977631 011
Q ss_pred CCCCCCCeeecCCcEEE-EcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEE
Q 038598 267 TGTPPNNTFVSNGTKAL-DTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFL 345 (392)
Q Consensus 267 ~~~~~~~~~~~~g~~v~-~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~ 345 (392)
+.++.|++|. ...+.+.+.||||||||.|+++..+ |. .+.++||+.|+||+++.++|+
T Consensus 501 -------l~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg~t~~~~f~ 559 (587)
T TIGR01480 501 -------LRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPGGKRSFRVT 559 (587)
T ss_pred -------eEecCCCEEEEEEECCCCCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCCCEEEEEEE
Confidence 3478899873 2333567899999999999998653 21 235889999999999999999
Q ss_pred eCCceeeEEeecchhhhhcCcceEEEE
Q 038598 346 ADNPGVWFMHCHFDVHLSWGLRMAWIV 372 (392)
Q Consensus 346 ~dnpG~w~~HCHi~~H~~~Gm~~~~~v 372 (392)
++|||.|+||||++.|++.|||+.|.|
T Consensus 560 ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 560 ADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999999999987
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1e-41 Score=342.85 Aligned_cols=269 Identities=18% Similarity=0.226 Sum_probs=167.6
Q ss_pred CCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEE-cCceEEEEEeCCccc-cceEEeEEEecC
Q 038598 22 NVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSI-ANHTLTVVEADAIYV-KPFETNILVIAP 99 (392)
Q Consensus 22 ~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~i-d~h~m~VIa~DG~~v-~P~~v~~l~l~p 99 (392)
..+|.+||||+. .|.+.++ +++|||||||+|.++.++|++ |+|+|+|||+||+++ +|+.+++|.|+|
T Consensus 210 ~~gd~~lVNG~~----------~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lap 278 (523)
T PRK10965 210 WFGDTLLTNGAI----------YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILM 278 (523)
T ss_pred ccCCeEEECCcc----------cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECc
Confidence 468999999996 3677775 579999999999999999998 899999999999997 899999999999
Q ss_pred CCeEEEEEEcCCCCCCCceEEEEeccCCCCC-cCCCcceEEEEEecCCCCCCCCCCCCccCCCCCCCCCccccccccccc
Q 038598 100 GQTTNVLLKTNPNPPNASFFMLARPYFTGMG-TFDNSTVAAILEYEAPSQDNSFRNRTLFKPSLPAINDTNFVANFSSKF 178 (392)
Q Consensus 100 GeRydVlv~~~~~~~~g~y~i~~~~~~~~~~-~~~~~~~~aiL~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~l 178 (392)
||||||+|++++. ++|++++........ .........++++...... . ...+ |. .|
T Consensus 279 GeR~dvlv~~~~~---~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~~~----P~------------~l 335 (523)
T PRK10965 279 GERFEVLVDTSDG---KAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLIS-A---SGTL----PD------------SL 335 (523)
T ss_pred cceEEEEEEcCCC---ceEEEEEecccCcccccccCCCceeEEEEeccCcC-C---CCcC----Ch------------hh
Confidence 9999999999863 789988765432110 0001223466666543211 0 0011 10 00
Q ss_pred cccccCCCCCCCCCCcceEEEEEeccCc-----------cc--CCCC--------CcccC-----CCC----Ce-----e
Q 038598 179 RSLANAQFPANVPQTVDKRFFFTVSLGA-----------NP--CPKN--------QTCQG-----PNG----TK-----F 223 (392)
Q Consensus 179 ~~l~~~~~p~~~p~~~~~~~~~~~~~~~-----------~~--~~~~--------~~~~~-----~~g----~~-----~ 223 (392)
..+.. .+. ......+++.+.+.... .. .... +...+ ..| +. .
T Consensus 336 ~~~~~--~~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (523)
T PRK10965 336 ASLPA--LPS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHH 412 (523)
T ss_pred ccCCC--CCc-ccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence 01000 000 00001222322221000 00 0000 00000 000 00 1
Q ss_pred eeeecceeccCCChhhhHhhhhccCCCcccCCCCCCCCcCCCCCCCCCCCeeecCCcEE-EEcccCC-CCCCceeecCCc
Q 038598 224 AAAVNNVSFALPSTALLQSYFFAKSKGVYTADFPQFPLHPFNYTGTPPNNTFVSNGTKA-LDTSILG-AESHPLHLHGYN 301 (392)
Q Consensus 224 ~~~iNg~s~~~p~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v-~~~~~~~-~~~HP~HlHG~~ 301 (392)
.|+|||++|.... +. +.++.|+++ +.+.+.+ .+.|||||||++
T Consensus 413 ~~~ING~~~~~~~-----------------------~~------------~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~ 457 (523)
T PRK10965 413 ANKINGKAFDMNK-----------------------PM------------FAAKKGQYERWVISGVGDMMLHPFHIHGTQ 457 (523)
T ss_pred cccCCCeECCCCC-----------------------cc------------eecCCCCEEEEEEEeCCCCCccCeEEeCcE
Confidence 2578888774210 00 346777754 2333333 468999999999
Q ss_pred eEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEe----CCceeeEEeecchhhhhcCcceEEEE
Q 038598 302 VYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLA----DNPGVWFMHCHFDVHLSWGLRMAWIV 372 (392)
Q Consensus 302 F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~----dnpG~w~~HCHi~~H~~~Gm~~~~~v 372 (392)
||||+++... ....++.|||||.|++ +.++|++++ +++|.|+|||||++|+|.|||+.|.|
T Consensus 458 F~Vl~~~g~~---------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 458 FRILSENGKP---------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred EEEEEecCCC---------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 9999996321 1223467999999987 667766665 46779999999999999999999987
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=6.8e-42 Score=341.15 Aligned_cols=249 Identities=16% Similarity=0.175 Sum_probs=163.7
Q ss_pred CCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEE-cCceEEEEEeCCccc-cceEEeEEEecC
Q 038598 22 NVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSI-ANHTLTVVEADAIYV-KPFETNILVIAP 99 (392)
Q Consensus 22 ~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~i-d~h~m~VIa~DG~~v-~P~~v~~l~l~p 99 (392)
..+|.+||||+. .+.++|++| +|||||||+|..+.+.|+| |+|+|+|||+||+++ +|+.+++|.|+|
T Consensus 207 ~~gd~~lvNG~~----------~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~p 275 (471)
T PRK10883 207 FVGDTLLVNGVQ----------SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAP 275 (471)
T ss_pred ccCCeeEECCcc----------CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECC
Confidence 468999999996 378999985 8999999999999999999 899999999998776 899999999999
Q ss_pred CCeEEEEEEcCCCCCCCceEEEEeccCCCC----CcCCCc---ceEEEEEecCCCCCCCCCCCCccCCCCCCCCCccccc
Q 038598 100 GQTTNVLLKTNPNPPNASFFMLARPYFTGM----GTFDNS---TVAAILEYEAPSQDNSFRNRTLFKPSLPAINDTNFVA 172 (392)
Q Consensus 100 GeRydVlv~~~~~~~~g~y~i~~~~~~~~~----~~~~~~---~~~aiL~y~~~~~~~~~~~~~~~~p~~p~~~~~~~~~ 172 (392)
||||||+|++++. +.+.+++....... +..... ....+++...... ....+...|
T Consensus 276 GeR~dvlVd~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~p--------- 337 (471)
T PRK10883 276 GERREILVDMSNG---DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL------LPLVTDNLP--------- 337 (471)
T ss_pred CCeEEEEEECCCC---ceEEEECCCccccccccccccCCccccccceeEEEEcccc------ccCCCCcCC---------
Confidence 9999999999763 56766653211100 000000 0122333322110 000000000
Q ss_pred cccccccccccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccCCChhhhHhhhhccCCCcc
Q 038598 173 NFSSKFRSLANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFALPSTALLQSYFFAKSKGVY 252 (392)
Q Consensus 173 ~~~~~l~~l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~p~~~~l~~~~~~~~~~~~ 252 (392)
..+.. .. ..+....++..+.++. . .|.|||++|....+
T Consensus 338 ---~~l~~---~~---~~~~~~~~~~~~~l~~----------------~--~~~INg~~~~~~~~--------------- 375 (471)
T PRK10883 338 ---MRLLP---DE---IMEGSPIRSREISLGD----------------D--LPGINGALWDMNRI--------------- 375 (471)
T ss_pred ---hhhcC---CC---CCCCCCcceEEEEecC----------------C--cCccCCcccCCCcc---------------
Confidence 00111 00 0111223333333321 1 25699988742100
Q ss_pred cCCCCCCCCcCCCCCCCCCCCeeecCCcEE-EEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccce
Q 038598 253 TADFPQFPLHPFNYTGTPPNNTFVSNGTKA-LDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNT 331 (392)
Q Consensus 253 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~v-~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDt 331 (392)
+ +.++.|+++ +.+ .+.+.||||||||.|||++++.... ...+..||||
T Consensus 376 --------~------------~~~~~g~~e~W~~--~n~~~HP~HlHg~~FqVl~~~G~~~---------~~~~~gwkDT 424 (471)
T PRK10883 376 --------D------------VTAQQGTWERWTV--RADMPQAFHIEGVMFLIRNVNGAMP---------FPEDRGWKDT 424 (471)
T ss_pred --------e------------eecCCCCEEEEEE--ECCCCcCEeECCccEEEEEecCCCC---------CccccCcCcE
Confidence 0 235667654 222 2247899999999999999953211 1123469999
Q ss_pred EEeCCCcEEEEEEEeCCce----eeEEeecchhhhhcCcceEEEEec
Q 038598 332 VGVPSGGWVAIRFLADNPG----VWFMHCHFDVHLSWGLRMAWIVLD 374 (392)
Q Consensus 332 v~v~~~~~~~ir~~~dnpG----~w~~HCHi~~H~~~Gm~~~~~v~~ 374 (392)
|.|+ +.++|+++++++| .|+|||||++|||.|||++|.|.+
T Consensus 425 V~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 425 VWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred EEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 9995 4699999999887 899999999999999999999854
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.6e-34 Score=284.62 Aligned_cols=261 Identities=22% Similarity=0.268 Sum_probs=165.0
Q ss_pred CCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCC
Q 038598 22 NVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQ 101 (392)
Q Consensus 22 ~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGe 101 (392)
..+|..+|||.. ..+...++.+|||||+|++..+.+.+.+.+++|+||++||.+++|+.++.|.|+|||
T Consensus 187 ~~g~~~~vnG~~-----------~p~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~e 255 (451)
T COG2132 187 FPGDTLLVNGAI-----------LPFKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGE 255 (451)
T ss_pred CCCCeEEECCCc-----------cceeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcc
Confidence 458899999964 344555556799999999999999999999999999999999999899999999999
Q ss_pred eEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCCCCCCCCCCCccCCCC-CCCCCccccccccccccc
Q 038598 102 TTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPSQDNSFRNRTLFKPSL-PAINDTNFVANFSSKFRS 180 (392)
Q Consensus 102 RydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~~~~~~~~~~~~~p~~-p~~~~~~~~~~~~~~l~~ 180 (392)
||||+|++.+. +.+.+.+... .. .....+.+....... . +.+.+++.. ....+. ........+..
T Consensus 256 r~~v~v~~~~~---~~~~l~~~~~-~~-----~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~d~-~~~~~~~~~~~ 321 (451)
T COG2132 256 RYEVLVDMNDG---GAVTLTALGE-DM-----PDTLKGFRAPNPILT-P---SYPVLNGRVGAPTGDM-ADHAPVGLLVT 321 (451)
T ss_pred eEEEEEEcCCC---CeEEEEeccc-cC-----Cceeeeeeccccccc-c---ccccccccccCCCcch-hhccccccchh
Confidence 99999999873 7788877651 11 011122221111000 0 000000000 000000 00000000000
Q ss_pred cccCCCCCCCCCCcceEEEEEeccCcccCCCCCcccCCCCCeeeeeecceeccCCChhhhHhhhhccCCCcccCCCCCCC
Q 038598 181 LANAQFPANVPQTVDKRFFFTVSLGANPCPKNQTCQGPNGTKFAAAVNNVSFALPSTALLQSYFFAKSKGVYTADFPQFP 260 (392)
Q Consensus 181 l~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNg~s~~~p~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (392)
. ...+.+ ..++.+.+.. .-..+.|.+|+..|... ..
T Consensus 322 ~----~~~~~~-~~~~~~~l~~----------------~~~~~~~~~n~~~~~~~-----------------------~~ 357 (451)
T COG2132 322 I----LVEPGP-NRDTDFHLIG----------------GIGGYVWAINGKAFDDN-----------------------RV 357 (451)
T ss_pred h----cCCCcc-cccccchhhc----------------ccccccccccCccCCCC-----------------------cC
Confidence 0 000000 0001110000 00123466776655310 01
Q ss_pred CcCCCCCCCCCCCeeecCCcEE-EEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcE
Q 038598 261 LHPFNYTGTPPNNTFVSNGTKA-LDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGW 339 (392)
Q Consensus 261 p~~~~~~~~~~~~~~~~~g~~v-~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~ 339 (392)
+ +.++.|+.+ +.+.+.+.+.|||||||+.|+|++.+ . ......+.|||||.+.+++.
T Consensus 358 ~------------~~~~~G~~~~~~i~n~~~~~HP~HlHg~~F~v~~~~-~---------~~~~~~~~~kDTv~v~~~~~ 415 (451)
T COG2132 358 T------------LIAKAGTRERWVLTNDTPMPHPFHLHGHFFQVLSGD-A---------PAPGAAPGWKDTVLVAPGER 415 (451)
T ss_pred c------------eeecCCCEEEEEEECCCCCccCeEEcCceEEEEecC-C---------CcccccCccceEEEeCCCeE
Confidence 1 336777754 34444556999999999999999996 1 12234578999999999999
Q ss_pred EEEEEEeCCceeeEEeecchhhhhcCcceEEEEe
Q 038598 340 VAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 340 ~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~ 373 (392)
+.|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 416 ~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 416 LLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred EEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 9999999999999999999999999999999874
No 17
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.97 E-value=5.5e-32 Score=233.23 Aligned_cols=141 Identities=32% Similarity=0.651 Sum_probs=118.1
Q ss_pred CCCCCCHHHHHHHHhcCCC----CCCCCceEEEcCCcCCCCCCC-----CCCccEEEEeCCCEEEEEEEecCCCCeEEEE
Q 038598 1 EWFNADPEAIINQSLQTGN----GPNVSEAYTFNGLPGPTYNCS-----AKDTYKLKVKPGKTYMLRLINTALNDELFFS 71 (392)
Q Consensus 1 Dwyh~~~~~~~~~~~~~~~----~~~~~d~~liNG~~~~~~~~~-----~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~ 71 (392)
||||+.+..++.+++..+. .++.+|++||||+++ +.|+ +...+.+++++|++|||||||+|+.+.+.|+
T Consensus 9 DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~ 86 (159)
T PF00394_consen 9 DWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFS 86 (159)
T ss_dssp EETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEE
T ss_pred ECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEE
Confidence 8999999999887665532 378999999999985 5554 2457899999999999999999999999999
Q ss_pred EcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecC
Q 038598 72 IANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEA 145 (392)
Q Consensus 72 id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~ 145 (392)
|++|+|+|||+||++++|+.+++|.|++||||||+|++++.+ |+|||++.............++.|||+|.+
T Consensus 87 i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~--g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 87 IDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPP--GNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp ETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCS--SEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred eeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCC--CeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 999999999999999999999999999999999999999854 999999963222222234678999999975
No 18
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.95 E-value=5e-28 Score=203.92 Aligned_cols=100 Identities=42% Similarity=0.732 Sum_probs=85.3
Q ss_pred eeecCCcEEE-EcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceee
Q 038598 274 TFVSNGTKAL-DTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVW 352 (392)
Q Consensus 274 ~~~~~g~~v~-~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w 352 (392)
+.++.|++|+ .+.+.+...||||||||.|+|++++.+.+... ....+++.+|.||||+.|+++++++|||+++|||.|
T Consensus 36 ~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w 114 (138)
T PF07731_consen 36 IEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPW 114 (138)
T ss_dssp EEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEE
T ss_pred EEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEEEEEeecceEE
Confidence 5688898873 23334567999999999999999987765443 345678899999999999999999999999999999
Q ss_pred EEeecchhhhhcCcceEEEEec
Q 038598 353 FMHCHFDVHLSWGLRMAWIVLD 374 (392)
Q Consensus 353 ~~HCHi~~H~~~Gm~~~~~v~~ 374 (392)
+||||+++|++.|||++|.|.+
T Consensus 115 ~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 115 LFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEESSHHHHHTT-EEEEEECH
T ss_pred EEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999864
No 19
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.73 E-value=4.7e-18 Score=161.42 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=93.3
Q ss_pred CCCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceE--EeEEEecC
Q 038598 22 NVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFE--TNILVIAP 99 (392)
Q Consensus 22 ~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~--v~~l~l~p 99 (392)
..++.++|||+.+.. .+.+++++|+++||||||++..+.+.|++.+|.+++|+.||+++.|.. ++.+.|+|
T Consensus 186 ~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~P 258 (311)
T TIGR02376 186 LTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPG 258 (311)
T ss_pred CCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCCCCCcceEEECC
Confidence 467999999995311 245799999999999999999999999999999999999999997644 89999999
Q ss_pred CCeEEEEEEcCCCCCCCceEEEEeccCCCCCcCCCcceEEEEEecCCC
Q 038598 100 GQTTNVLLKTNPNPPNASFFMLARPYFTGMGTFDNSTVAAILEYEAPS 147 (392)
Q Consensus 100 GeRydVlv~~~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~~~~ 147 (392)
||||||+|++++. |.|++++..+.... +....++|+|.+..
T Consensus 259 G~R~dv~v~~~~p---G~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 259 GSAAAALYTFEQP---GVYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred CceEEEEEEeCCC---eEEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999999999973 89999987653221 23477999997653
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.31 E-value=8.3e-10 Score=105.10 Aligned_cols=87 Identities=20% Similarity=0.072 Sum_probs=67.0
Q ss_pred ecCCcEE--EEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCC-ccceEEeCCCcEEEEEEEeCCceee
Q 038598 276 VSNGTKA--LDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPV-ERNTVGVPSGGWVAIRFLADNPGVW 352 (392)
Q Consensus 276 ~~~g~~v--~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~-~rDtv~v~~~~~~~ir~~~dnpG~w 352 (392)
++.|+.+ ..++......+.||++|++|.++....+.. ..+. ..|++.|.||+.+.|.++++.||.|
T Consensus 206 v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~-----------~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y 274 (311)
T TIGR02376 206 LTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFA-----------NPPNRDVETWFIPGGSAAAALYTFEQPGVY 274 (311)
T ss_pred cccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCccc-----------CCCCCCcceEEECCCceEEEEEEeCCCeEE
Confidence 4555544 333333346789999999999999842221 1122 3689999999999999999999999
Q ss_pred EEeecchhhh-hcCcceEEEEe
Q 038598 353 FMHCHFDVHL-SWGLRMAWIVL 373 (392)
Q Consensus 353 ~~HCHi~~H~-~~Gm~~~~~v~ 373 (392)
.+|||...|. ..|++++|.|+
T Consensus 275 ~~~~~~~~~~~~~g~~~~i~~~ 296 (311)
T TIGR02376 275 AYVDHNLIEAFEKGAAAQVKVE 296 (311)
T ss_pred EEECcHHHHHHhCCCEEEEEEC
Confidence 9999999987 77999999875
No 21
>PLN02604 oxidoreductase
Probab=98.96 E-value=4.2e-09 Score=108.29 Aligned_cols=87 Identities=22% Similarity=0.332 Sum_probs=63.1
Q ss_pred eeecCCcEEEE-ccc-CCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCcee
Q 038598 274 TFVSNGTKALD-TSI-LGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGV 351 (392)
Q Consensus 274 ~~~~~g~~v~~-~~~-~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~ 351 (392)
+.++.|+.|.. +.+ .....|+||+||+. +. +. ..++.. .......|+||++.+++|+++++|.
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~-~~-~~--~~~DG~-----------~~~tq~~i~pg~s~~y~f~~~~~Gt 121 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIR-QI-GT--PWFDGT-----------EGVTQCPILPGETFTYEFVVDRPGT 121 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCC-CC-CC--ccccCC-----------CccccCccCCCCeEEEEEEcCCCEE
Confidence 45788887732 222 23468999999994 21 11 001110 1123457899999999999999999
Q ss_pred eEEeecchhhhhcCcceEEEEecC
Q 038598 352 WFMHCHFDVHLSWGLRMAWIVLDG 375 (392)
Q Consensus 352 w~~HCHi~~H~~~Gm~~~~~v~~~ 375 (392)
|.||||...|...||++.|.|.+.
T Consensus 122 ~wyH~H~~~q~~~Gl~G~liV~~~ 145 (566)
T PLN02604 122 YLYHAHYGMQREAGLYGSIRVSLP 145 (566)
T ss_pred EEEeeCcHHHHhCCCeEEEEEEec
Confidence 999999999999999999999864
No 22
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.46 E-value=1.1e-06 Score=90.19 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=61.6
Q ss_pred eeecCCcEEEE-c-ccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCcee
Q 038598 274 TFVSNGTKALD-T-SILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGV 351 (392)
Q Consensus 274 ~~~~~g~~v~~-~-~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~ 351 (392)
+.++.|+.|.. + |......+.||+||... .+. ...|.. | --....|+||++.+.+|+++.+|.
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~--~~~--~~~DG~----------~-~vtq~~I~PG~s~~y~f~~~~~Gt 98 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQ--IGT--PWADGT----------A-GVTQCAINPGETFIYNFVVDRPGT 98 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCC--cCC--cccCCC----------C-ccccCCcCCCCEEEEEEEcCCCEE
Confidence 55788887632 2 22234679999999941 111 000100 0 011236899999999999999999
Q ss_pred eEEeecchhhhhcCcceEEEEecC
Q 038598 352 WFMHCHFDVHLSWGLRMAWIVLDG 375 (392)
Q Consensus 352 w~~HCHi~~H~~~Gm~~~~~v~~~ 375 (392)
|.||||...|...||.+.|.|++.
T Consensus 99 ~wyH~H~~~q~~~Gl~G~liV~~~ 122 (541)
T TIGR03388 99 YFYHGHYGMQRSAGLYGSLIVDVP 122 (541)
T ss_pred EEEEecchHHhhccceEEEEEecC
Confidence 999999999999999999999854
No 23
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.32 E-value=7e-07 Score=72.55 Aligned_cols=86 Identities=21% Similarity=0.153 Sum_probs=59.3
Q ss_pred eeecCCcEEEE-cccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCC-cee
Q 038598 274 TFVSNGTKALD-TSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADN-PGV 351 (392)
Q Consensus 274 ~~~~~g~~v~~-~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dn-pG~ 351 (392)
+.++.|+.|.. +.+....++.+|+||...---....|.. .. + .-.|.||+..+.+|+++. +|.
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~--------~~---~----~~~i~pG~~~~Y~~~~~~~~Gt 92 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVP--------GV---T----QCPIAPGESFTYEFTANQQAGT 92 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGT--------TT---S----GSSBSTTEEEEEEEEESSCSEE
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcc--------cc---c----ceeEEeecceeeeEeeeccccc
Confidence 56888998722 2222356788999996421100011110 00 0 124789999999999988 999
Q ss_pred eEEeecchhhhhcCcceEEEEec
Q 038598 352 WFMHCHFDVHLSWGLRMAWIVLD 374 (392)
Q Consensus 352 w~~HCHi~~H~~~Gm~~~~~v~~ 374 (392)
|.||||...|...||.+.|.|++
T Consensus 93 ~wYH~H~~~~~~~GL~G~~iV~~ 115 (117)
T PF07732_consen 93 YWYHSHVHGQQVMGLYGAIIVEP 115 (117)
T ss_dssp EEEEECSTTHHHTTEEEEEEEE-
T ss_pred eeEeeCCCchhcCcCEEEEEEcC
Confidence 99999999998899999999975
No 24
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.24 E-value=8.3e-05 Score=76.45 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=55.9
Q ss_pred eeecCCcEE--EEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCC-ce
Q 038598 274 TFVSNGTKA--LDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADN-PG 350 (392)
Q Consensus 274 ~~~~~g~~v--~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dn-pG 350 (392)
+.++.|+++ ..++......+-|||+||.|.|++.. |. +..|...|++.|.+|+.+.|.++++. +|
T Consensus 189 i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~D-G~-----------~~~P~~~~~l~i~~GqRydVlv~a~~~~g 256 (539)
T TIGR03389 189 LTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVD-AT-----------YTKPFKTKTIVIGPGQTTNVLLTADQSPG 256 (539)
T ss_pred EEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeC-Cc-----------ccCceEeCeEEecCCCEEEEEEECCCCCc
Confidence 567888865 33333334568899999999999984 21 23577889999999999999999975 89
Q ss_pred eeEEeecc
Q 038598 351 VWFMHCHF 358 (392)
Q Consensus 351 ~w~~HCHi 358 (392)
.|.++-+.
T Consensus 257 ~y~i~~~~ 264 (539)
T TIGR03389 257 RYFMAARP 264 (539)
T ss_pred eEEEEEec
Confidence 88887653
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=97.86 E-value=7.8e-05 Score=76.07 Aligned_cols=91 Identities=10% Similarity=0.098 Sum_probs=72.7
Q ss_pred EEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccc---eEEeEEEecCCCeEE
Q 038598 28 TFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKP---FETNILVIAPGQTTN 104 (392)
Q Consensus 28 liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P---~~v~~l~l~pGeRyd 104 (392)
+|||+. |.. ..+.++++.|++.+|+|+|.+.....-|+|.++.|+|++.||.++.+ ..-|++.+.+ ++..
T Consensus 415 ~ING~~---~~~---~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~ 487 (523)
T PRK10965 415 KINGKA---FDM---NKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSE 487 (523)
T ss_pred cCCCeE---CCC---CCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEE
Confidence 799985 322 13668899999999999999876568899999999999999998753 3468999966 8999
Q ss_pred EEEEcCCCC-CCCceEEEEecc
Q 038598 105 VLLKTNPNP-PNASFFMLARPY 125 (392)
Q Consensus 105 Vlv~~~~~~-~~g~y~i~~~~~ 125 (392)
++++++... ..|.|...+...
T Consensus 488 i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 488 VLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred EEEEecCCCCCCCCEEEEeCch
Confidence 999998532 126888888764
No 26
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=97.86 E-value=0.00023 Score=59.38 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=69.8
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc-----------cceEEeEEEecCCCeEEEEEEcCCC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYV-----------KPFETNILVIAPGQTTNVLLKTNPN 112 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v-----------~P~~v~~l~l~pGeRydVlv~~~~~ 112 (392)
...++++.|++++|+|+|.+.. ..-|++.||+++|++.++... .|...|++.+.+|++..+.++++.
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~- 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN- 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS-
T ss_pred cceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec-
Confidence 4789999999999999997766 778999999999999999884 578899999999999999999974
Q ss_pred CCCCceEEEEecc
Q 038598 113 PPNASFFMLARPY 125 (392)
Q Consensus 113 ~~~g~y~i~~~~~ 125 (392)
+ |.|.+.+...
T Consensus 111 ~--G~w~~HCHi~ 121 (138)
T PF07731_consen 111 P--GPWLFHCHIL 121 (138)
T ss_dssp T--EEEEEEESSH
T ss_pred c--eEEEEEEchH
Confidence 4 9999998864
No 27
>PLN02835 oxidoreductase
Probab=97.81 E-value=0.0012 Score=67.63 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=58.4
Q ss_pred ceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEE-EEEeCCccccceEEeEEEecCCCeE
Q 038598 25 EAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLT-VVEADAIYVKPFETNILVIAPGQTT 103 (392)
Q Consensus 25 d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~-VIa~DG~~v~P~~v~~l~l~pGeRy 103 (392)
..++|||+.. -|.++++.|.+.++++.|--.. ...++..|-.+. --..||.+. . .-.|.||+.+
T Consensus 49 ~~~~~NG~~P---------GP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-t----Q~pI~PG~sf 113 (539)
T PLN02835 49 QVILINGQFP---------GPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-T----NCPIPPNSNY 113 (539)
T ss_pred EEEEECCcCC---------CCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-C----cCCCCCCCcE
Confidence 4677888742 4899999999999999999754 334555443322 123698653 1 3478999988
Q ss_pred EEEEEcCCCCCCCceEEEEec
Q 038598 104 NVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 104 dVlv~~~~~~~~g~y~i~~~~ 124 (392)
..-+++.+.+ |.||-....
T Consensus 114 ~Y~F~~~~q~--GT~WYHsH~ 132 (539)
T PLN02835 114 TYKFQTKDQI--GTFTYFPST 132 (539)
T ss_pred EEEEEECCCC--EeEEEEeCc
Confidence 8888864334 999999874
No 28
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=97.78 E-value=0.00011 Score=75.77 Aligned_cols=85 Identities=9% Similarity=0.153 Sum_probs=68.7
Q ss_pred EEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEE
Q 038598 27 YTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVL 106 (392)
Q Consensus 27 ~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVl 106 (392)
..|||+.. . ....+.++.|+++||||+|.+.. ..-+++.||.+.|++.||.+..+ -+++.|.|||++++.
T Consensus 488 wtiNG~~~---~----~~~pl~v~~Gervri~l~N~t~~-~HpmHlHG~~f~v~~~~G~~~~~--~dTv~V~Pg~t~~~~ 557 (587)
T TIGR01480 488 WSFDGEAF---G----LKTPLRFNYGERLRVVLVNDTMM-AHPIHLHGMWSELEDGQGEFQVR--KHTVDVPPGGKRSFR 557 (587)
T ss_pred EEECCccC---C----CCCceEecCCCEEEEEEECCCCC-CcceeEcCceeeeecCCCccccc--CCceeeCCCCEEEEE
Confidence 67888752 1 12358899999999999997764 57799999999999889864322 267999999999999
Q ss_pred EEcCCCCCCCceEEEEec
Q 038598 107 LKTNPNPPNASFFMLARP 124 (392)
Q Consensus 107 v~~~~~~~~g~y~i~~~~ 124 (392)
+++++. |.|++.+..
T Consensus 558 f~ad~p---G~w~~HCH~ 572 (587)
T TIGR01480 558 VTADAL---GRWAYHCHM 572 (587)
T ss_pred EECCCC---eEEEEcCCC
Confidence 999876 999999875
No 29
>PLN02191 L-ascorbate oxidase
Probab=97.77 E-value=9e-05 Score=76.53 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=61.1
Q ss_pred eeecCCcEEEE-c-ccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccce------EEeCCCcEEEEEEE
Q 038598 274 TFVSNGTKALD-T-SILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNT------VGVPSGGWVAIRFL 345 (392)
Q Consensus 274 ~~~~~g~~v~~-~-~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDt------v~v~~~~~~~ir~~ 345 (392)
+.++.|+.|.. + |......+.+|.||.... +. .|.|- -.|+||++.+.+|+
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~--~~-------------------~~~DGv~gvtq~pI~PG~s~~Y~f~ 114 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQK--GS-------------------PWADGAAGVTQCAINPGETFTYKFT 114 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCC--CC-------------------ccccCCCccccCCcCCCCeEEEEEE
Confidence 56788887622 2 223346799999998521 11 12332 35899999999999
Q ss_pred eCCceeeEEeecchhhhhcCcceEEEEec
Q 038598 346 ADNPGVWFMHCHFDVHLSWGLRMAWIVLD 374 (392)
Q Consensus 346 ~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~ 374 (392)
++.+|.|.||||...+...||.+.|.|++
T Consensus 115 ~~~~GT~wYHsH~~~q~~~Gl~G~liV~~ 143 (574)
T PLN02191 115 VEKPGTHFYHGHYGMQRSAGLYGSLIVDV 143 (574)
T ss_pred CCCCeEEEEeeCcHHHHhCCCEEEEEEcc
Confidence 99999999999999999999999999974
No 30
>PLN02792 oxidoreductase
Probab=97.75 E-value=0.0018 Score=66.32 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=59.6
Q ss_pred ceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEE---eCCccccceEEeEEEecCCC
Q 038598 25 EAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVE---ADAIYVKPFETNILVIAPGQ 101 (392)
Q Consensus 25 d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa---~DG~~v~P~~v~~l~l~pGe 101 (392)
..++|||+.. -|.++++.|.+.++++.|--.. .. +|.=|-+.+.. .||.+. + .-.|.||+
T Consensus 36 ~~~~vNGq~P---------GP~I~~~~GD~v~V~v~N~L~~-~t--tiHWHGl~q~~~~~~DGv~~----t-qcPI~PG~ 98 (536)
T PLN02792 36 RGILINGQFP---------GPEIRSLTNDNLVINVHNDLDE-PF--LLSWNGVHMRKNSYQDGVYG----T-TCPIPPGK 98 (536)
T ss_pred EEEEECCCCC---------CCcEEEECCCEEEEEEEeCCCC-Cc--CEeCCCcccCCCCccCCCCC----C-cCccCCCC
Confidence 4688999853 4899999999999999999763 33 44444454544 799643 1 24789999
Q ss_pred eEEEEEEcCCCCCCCceEEEEec
Q 038598 102 TTNVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 102 RydVlv~~~~~~~~g~y~i~~~~ 124 (392)
.|..-+++++.+ |.||-....
T Consensus 99 sftY~F~~~~q~--GT~WYHsH~ 119 (536)
T PLN02792 99 NYTYDFQVKDQV--GSYFYFPSL 119 (536)
T ss_pred cEEEEEEeCCCc--cceEEecCc
Confidence 888888885334 999999875
No 31
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.70 E-value=0.00018 Score=61.87 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=68.1
Q ss_pred eeecCCcEE--EEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCC-ce
Q 038598 274 TFVSNGTKA--LDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADN-PG 350 (392)
Q Consensus 274 ~~~~~g~~v--~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dn-pG 350 (392)
+.++.|+++ ..++......|.||+.||.|+||+.... ...|...|++.|.+|+.+.|.++++. +|
T Consensus 62 ~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~------------~v~p~~~~~l~l~~G~R~dvlv~~~~~~g 129 (159)
T PF00394_consen 62 IKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGV------------PVEPYKVDTLVLAPGQRYDVLVTADQPPG 129 (159)
T ss_dssp EEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTE------------EEEEEEESBEEE-TTEEEEEEEEECSCSS
T ss_pred EEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccc------------cccccccceEEeeCCeEEEEEEEeCCCCC
Confidence 568888876 2333334467999999999999998422 12378899999999999999999987 99
Q ss_pred eeEEee----cchhhhhcCcceEEEEe
Q 038598 351 VWFMHC----HFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 351 ~w~~HC----Hi~~H~~~Gm~~~~~v~ 373 (392)
.|.+++ +...+...|+...+.+.
T Consensus 130 ~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 130 NYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp EEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred eEEEEEecccCCCccCCCcEEEEEEEE
Confidence 999999 66677888888877654
No 32
>PLN02354 copper ion binding / oxidoreductase
Probab=97.69 E-value=0.002 Score=66.30 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=59.2
Q ss_pred ceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEE-EEEeCCccccceEEeEEEecCCCeE
Q 038598 25 EAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLT-VVEADAIYVKPFETNILVIAPGQTT 103 (392)
Q Consensus 25 d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~-VIa~DG~~v~P~~v~~l~l~pGeRy 103 (392)
..++|||+.. -|.++++.|.+.++++.|.-.. ...++..|-.+. --..||.+. ..-.|.||+.|
T Consensus 47 ~~~~iNGq~P---------GP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf 111 (552)
T PLN02354 47 QVILINGQFP---------GPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNF 111 (552)
T ss_pred EEEEECCCCc---------CCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcE
Confidence 4788888742 4899999999999999999753 333444443222 123788653 23478999999
Q ss_pred EEEEEcCCCCCCCceEEEEec
Q 038598 104 NVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 104 dVlv~~~~~~~~g~y~i~~~~ 124 (392)
..-+++.+.. |.||-....
T Consensus 112 ~Y~F~~~~q~--GT~WYHsH~ 130 (552)
T PLN02354 112 TYHFQPKDQI--GSYFYYPST 130 (552)
T ss_pred EEEEEeCCCC--cceEEecCc
Confidence 9888875334 999998764
No 33
>PRK10883 FtsI repressor; Provisional
Probab=97.69 E-value=0.007 Score=61.24 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCCceee-cCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeEEee
Q 038598 290 AESHPLHL-HGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWFMHC 356 (392)
Q Consensus 290 ~~~HP~Hl-HG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~~HC 356 (392)
....-++| +||.|+|++...|. +..|...|.+.|.||+.+.|.+++++.+.+.+++
T Consensus 239 ~~~~~l~l~d~~~~~vIa~DGg~-----------~~~P~~~~~l~l~pGeR~dvlVd~~~~~~~~l~~ 295 (471)
T PRK10883 239 ARRYQLQMSDGRPLHVIAGDQGF-----------LPAPVSVKQLSLAPGERREILVDMSNGDEVSITA 295 (471)
T ss_pred CceEEEEEcCCCeEEEEEeCCCc-----------ccCCcEeCeEEECCCCeEEEEEECCCCceEEEEC
Confidence 45677788 89999999996553 2356677899999999999999998878888886
No 34
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.56 E-value=0.00036 Score=59.04 Aligned_cols=35 Identities=14% Similarity=0.373 Sum_probs=31.7
Q ss_pred EEEEEEEeCCceeeEEeecchhhhhcCcceEEEEe
Q 038598 339 WVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 339 ~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~ 373 (392)
+..+.|+++.+|.+.||||+..|...||.+.|.|+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 46788998999999999999999999999999873
No 35
>PLN02991 oxidoreductase
Probab=97.52 E-value=0.0042 Score=63.62 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=59.6
Q ss_pred ceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEE-EEEeCCccccceEEeEEEecCCCeE
Q 038598 25 EAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLT-VVEADAIYVKPFETNILVIAPGQTT 103 (392)
Q Consensus 25 d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~-VIa~DG~~v~P~~v~~l~l~pGeRy 103 (392)
..++|||+.. -|.++++.|.+.++++.|.-.. ...|+..|-.+. =-..||.+. + .-.|.||+.+
T Consensus 48 ~~~~vNG~~P---------GP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sf 112 (543)
T PLN02991 48 QGILINGKFP---------GPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNY 112 (543)
T ss_pred EEEEEcCCCC---------CCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC----C-CCccCCCCcE
Confidence 4678888742 4899999999999999999753 344555554321 134799643 1 3578999998
Q ss_pred EEEEEcCCCCCCCceEEEEec
Q 038598 104 NVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 104 dVlv~~~~~~~~g~y~i~~~~ 124 (392)
..-+++.+.+ |.||-....
T Consensus 113 tY~F~~~~q~--GT~WYHsH~ 131 (543)
T PLN02991 113 TYALQVKDQI--GSFYYFPSL 131 (543)
T ss_pred EEEEEeCCCC--cceEEecCc
Confidence 8888885334 999999875
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=97.45 E-value=0.0092 Score=61.44 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=59.6
Q ss_pred ceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEE-EEEeCCccccceEEeEEEecCCCeE
Q 038598 25 EAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLT-VVEADAIYVKPFETNILVIAPGQTT 103 (392)
Q Consensus 25 d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~-VIa~DG~~v~P~~v~~l~l~pGeRy 103 (392)
..++|||+.. -|.++++.|.+.++++.|.-......|+..|-.+. --..||.+-. ..-.|.||+.+
T Consensus 28 ~~~~~NG~~P---------GP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf 94 (538)
T TIGR03390 28 YSVVVNGTSP---------GPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFF 94 (538)
T ss_pred EEEEECCcCC---------CCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcE
Confidence 4799999853 48999999999999999986543444555554321 2237888742 12347899988
Q ss_pred EEEEEcCC-CCCCCceEEEEec
Q 038598 104 NVLLKTNP-NPPNASFFMLARP 124 (392)
Q Consensus 104 dVlv~~~~-~~~~g~y~i~~~~ 124 (392)
..-+++.. .+ |.||-....
T Consensus 95 ~Y~f~~~~~q~--GT~WYHsH~ 114 (538)
T TIGR03390 95 DYEIKPEPGDA--GSYFYHSHV 114 (538)
T ss_pred EEEEEecCCCC--eeeEEecCC
Confidence 87777642 33 999998875
No 37
>PLN02168 copper ion binding / pectinesterase
Probab=97.37 E-value=0.00057 Score=70.01 Aligned_cols=82 Identities=13% Similarity=0.063 Sum_probs=60.9
Q ss_pred eeecCCcEEE-EcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccc-----eEEeCCCcEEEEEEEe-
Q 038598 274 TFVSNGTKAL-DTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERN-----TVGVPSGGWVAIRFLA- 346 (392)
Q Consensus 274 ~~~~~g~~v~-~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rD-----tv~v~~~~~~~ir~~~- 346 (392)
+.++.|+.+. ++.+.-....-+|+||.. +... .|.| ...|+||++.+.+|++
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~--~~~~-------------------~~~DGv~gtQcpI~PG~sftY~F~~~ 117 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQ--LRKN-------------------SWQDGVRGTNCPILPGTNWTYRFQVK 117 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCcc--CCCC-------------------CCcCCCCCCcCCCCCCCcEEEEEEeC
Confidence 5678888762 222222467889999964 2121 1222 2468999999999999
Q ss_pred CCceeeEEeecchhhhhcCcceEEEEecCC
Q 038598 347 DNPGVWFMHCHFDVHLSWGLRMAWIVLDGE 376 (392)
Q Consensus 347 dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 376 (392)
+.+|.+.||||...+...||.+.|.|++.+
T Consensus 118 ~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~ 147 (545)
T PLN02168 118 DQIGSYFYFPSLLLQKAAGGYGAIRIYNPE 147 (545)
T ss_pred CCCceEEEecChhhhhhCcceeEEEEcCCc
Confidence 589999999999999999999999997643
No 38
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.32 E-value=0.0008 Score=52.90 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=54.8
Q ss_pred eeecCCcEEEEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeE
Q 038598 274 TFVSNGTKALDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWF 353 (392)
Q Consensus 274 ~~~~~g~~v~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~ 353 (392)
+.++.|+.|...+ .+...|-+.++.-.+..-.. ........+.+.+.||++..+.|.. +|.|.
T Consensus 19 i~v~~G~~V~~~N-~~~~~H~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~ 81 (99)
T TIGR02656 19 ISIAAGDTVEWVN-NKGGPHNVVFDEDAVPAGVK--------------ELAKSLSHKDLLNSPGESYEVTFST--PGTYT 81 (99)
T ss_pred EEECCCCEEEEEE-CCCCCceEEECCCCCccchh--------------hhcccccccccccCCCCEEEEEeCC--CEEEE
Confidence 6788999885543 34466766665432211100 0011123467888999999887765 99999
Q ss_pred EeecchhhhhcCcceEEEEe
Q 038598 354 MHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 354 ~HCHi~~H~~~Gm~~~~~v~ 373 (392)
|||- -|..+||.+.|.|+
T Consensus 82 y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 82 FYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEcC--CccccCCEEEEEEC
Confidence 9998 89999999999873
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.27 E-value=0.0024 Score=66.03 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=61.6
Q ss_pred eeecCCcEEE-EcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEe-CCcee
Q 038598 274 TFVSNGTKAL-DTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLA-DNPGV 351 (392)
Q Consensus 274 ~~~~~g~~v~-~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~-dnpG~ 351 (392)
+.+..|+.|+ ++.+.-....-+|.||....--....|. | - .-..|+||+..+.+|++ +.+|.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv--------------~-~-TQcPI~PG~sftY~F~~~dq~GT 125 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGV--------------G-G-TNCAIPAGWNWTYQFQVKDQVGS 125 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCC--------------C-C-CcCCcCCCCcEEEEEEeCCCCce
Confidence 4577888762 3333334678899999643221111111 1 1 23478999999999999 68999
Q ss_pred eEEeecchhhhhcCcceEEEEecC
Q 038598 352 WFMHCHFDVHLSWGLRMAWIVLDG 375 (392)
Q Consensus 352 w~~HCHi~~H~~~Gm~~~~~v~~~ 375 (392)
+.||+|..++...||.+.|.|.+.
T Consensus 126 ~WYHsH~~~Q~~~Gl~GalII~~~ 149 (596)
T PLN00044 126 FFYAPSTALHRAAGGYGAITINNR 149 (596)
T ss_pred eEeeccchhhhhCcCeeEEEEcCc
Confidence 999999999999999999999754
No 40
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.60 E-value=0.01 Score=46.61 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=35.4
Q ss_pred ceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEe
Q 038598 330 NTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 330 Dtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~ 373 (392)
.+..+.+|+...+.|. .+|.|.|+|- - |...||-+.|.|+
T Consensus 60 ~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 60 SSPLLAPGETYSVTFT--KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEBSTTEEEEEEEE--SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred cceecCCCCEEEEEeC--CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 5777889999888877 9999999999 4 9999999999874
No 41
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.09 E-value=0.023 Score=46.83 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=42.7
Q ss_pred eeecCCcEEEE-cccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceee
Q 038598 274 TFVSNGTKALD-TSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVW 352 (392)
Q Consensus 274 ~~~~~g~~v~~-~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w 352 (392)
+.++.|+.|+. +.+.+...|.+-++++.+ ...|++|++..|+|.++-||.|
T Consensus 63 I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 63 LVVKKGTPVKVTVENKSPISEGFSIDAYGI----------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEECCCCEEEEEEEeCCCCccceEECCCCc----------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 67899998833 223344567666665411 3567889999999999999999
Q ss_pred EEeecch
Q 038598 353 FMHCHFD 359 (392)
Q Consensus 353 ~~HCHi~ 359 (392)
.|||-+-
T Consensus 115 ~y~C~~H 121 (135)
T TIGR03096 115 TIWCQLH 121 (135)
T ss_pred EEeCCCC
Confidence 9999853
No 42
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.86 E-value=0.029 Score=57.62 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=59.2
Q ss_pred eeecCCcEE-EEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeC-Ccee
Q 038598 274 TFVSNGTKA-LDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLAD-NPGV 351 (392)
Q Consensus 274 ~~~~~g~~v-~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~d-npG~ 351 (392)
+.+..|+.+ .++.+.-..+-.+|.||....=-....|. .=-.-.|+||+..+-+|+.+ ..|.
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG~----------------~~TqCPI~Pg~~~tY~F~v~~q~GT 124 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDGV----------------YITQCPIQPGENFTYRFTVKDQIGT 124 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccCC----------------ccccCCcCCCCeEEEEEEeCCccee
Confidence 456777765 23222223556678898743221111111 11133578999999999995 9999
Q ss_pred eEEeecchhhhhcCcceEEEEecC
Q 038598 352 WFMHCHFDVHLSWGLRMAWIVLDG 375 (392)
Q Consensus 352 w~~HCHi~~H~~~Gm~~~~~v~~~ 375 (392)
|.+|-|..+|.+.||.+.|.|.+.
T Consensus 125 ~~yh~h~~~~Ra~G~~G~liI~~~ 148 (563)
T KOG1263|consen 125 LWYHSHVSWQRATGVFGALIINPR 148 (563)
T ss_pred EEEeeccccccccCceeEEEEcCC
Confidence 999999999999999999999753
No 43
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.65 E-value=0.075 Score=53.62 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=65.4
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc---cceEEeEEEecCCCeEEEEEEcCCCCCCCceEE
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYV---KPFETNILVIAPGQTTNVLLKTNPNPPNASFFM 120 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v---~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i 120 (392)
...+.++.|+++||+|.|-+. -..-|++.|+.|.|++.| ... .+..-|++.+.+|+|..+.++++.. |.|.+
T Consensus 356 ~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~---g~~~~ 430 (451)
T COG2132 356 RVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLLVRFDADYP---GPWMF 430 (451)
T ss_pred cCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEEEEEeCCCC---CceEE
Confidence 467889999999999999998 678899999999999999 332 3456799999999999999888766 68888
Q ss_pred EEecc
Q 038598 121 LARPY 125 (392)
Q Consensus 121 ~~~~~ 125 (392)
.+...
T Consensus 431 HCH~l 435 (451)
T COG2132 431 HCHIL 435 (451)
T ss_pred eccch
Confidence 88764
No 44
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.16 E-value=0.038 Score=46.28 Aligned_cols=45 Identities=20% Similarity=0.233 Sum_probs=42.4
Q ss_pred cceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEe
Q 038598 329 RNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 329 rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~ 373 (392)
..++.+.||....+-..+.++|.+.|-|=|-+|.++||-+.|.|.
T Consensus 113 ~~~v~L~PG~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 113 PNTVTLAPGKSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred cceeEeCCCCcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 359999999999999999999999999999999999999999874
No 45
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.10 E-value=0.13 Score=43.57 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=52.4
Q ss_pred CCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCce--EEE-EEeCCccccceEEeEEEe--
Q 038598 23 VSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHT--LTV-VEADAIYVKPFETNILVI-- 97 (392)
Q Consensus 23 ~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~--m~V-Ia~DG~~v~P~~v~~l~l-- 97 (392)
..+.+.++|.. .|.|++++|.++++++.|....-...|.|..+. +.. -..||....+ ....+
T Consensus 40 ~~~~f~~~~~~----------~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~---~~~i~p~ 106 (148)
T TIGR03095 40 SMYSFEIHDLK----------NPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVA---GTGFLPP 106 (148)
T ss_pred CceeEEecCCC----------CCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccc---cCcccCC
Confidence 45566666654 388999999999999999976333444444331 111 1356643221 11112
Q ss_pred -cCCCe--EEEEEEcCCCCCCCceEEEEec
Q 038598 98 -APGQT--TNVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 98 -~pGeR--ydVlv~~~~~~~~g~y~i~~~~ 124 (392)
..|+. .++..++++. |.||..+..
T Consensus 107 ~~~g~~~~~~~tf~f~~a---GtywyhC~~ 133 (148)
T TIGR03095 107 PKSGKFGYTDFTYHFSTA---GTYWYLCTY 133 (148)
T ss_pred CCCCccceeEEEEECCCC---eEEEEEcCC
Confidence 23544 4788888754 999999763
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.09 E-value=0.085 Score=54.31 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=35.1
Q ss_pred EEeCCCcEEEEEEEeCCceeeEEeecchhhh-hcCcceEEEEec
Q 038598 332 VGVPSGGWVAIRFLADNPGVWFMHCHFDVHL-SWGLRMAWIVLD 374 (392)
Q Consensus 332 v~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~-~~Gm~~~~~v~~ 374 (392)
+.+.||.+..+.|+++.||.|.+||...-|. ..+|.+.+.|++
T Consensus 591 ~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 591 MEVAPQATASVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEcCCceEEEEEEcCCCEEEEEECCcccccCcccceEEEEEEe
Confidence 4567899999999999999999999985442 248888888863
No 47
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=94.79 E-value=0.051 Score=44.03 Aligned_cols=86 Identities=15% Similarity=0.166 Sum_probs=62.4
Q ss_pred CceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEE-EEeCCccccceEEeEEEecCCCe
Q 038598 24 SEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTV-VEADAIYVKPFETNILVIAPGQT 102 (392)
Q Consensus 24 ~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~V-Ia~DG~~v~P~~v~~l~l~pGeR 102 (392)
-..+++||... -|+|.++.|++.+++|.|.... ...|++.|-.+.- -..||.+-.+ .-.|.||+.
T Consensus 14 ~~~~~~ng~~p---------GPtI~v~~Gd~v~i~~~N~l~~-~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~ 79 (117)
T PF07732_consen 14 RKVWTYNGQFP---------GPTIRVREGDTVRITVTNNLDE-PTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGES 79 (117)
T ss_dssp EEEEEETTBSS---------EEEEEEETTEEEEEEEEEESSS-GBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEE
T ss_pred EEEEEECCCCC---------CCEEEEEcCCeeEEEEEecccc-ccccccceeeeeeeeecCCccccc----ceeEEeecc
Confidence 56788999852 4899999999999999999844 4456665532111 1267765322 134889999
Q ss_pred EEEEEEcCCCCCCCceEEEEecc
Q 038598 103 TNVLLKTNPNPPNASFFMLARPY 125 (392)
Q Consensus 103 ydVlv~~~~~~~~g~y~i~~~~~ 125 (392)
+..-+++++.+ |.||-.....
T Consensus 80 ~~Y~~~~~~~~--Gt~wYH~H~~ 100 (117)
T PF07732_consen 80 FTYEFTANQQA--GTYWYHSHVH 100 (117)
T ss_dssp EEEEEEESSCS--EEEEEEECST
T ss_pred eeeeEeeeccc--cceeEeeCCC
Confidence 99999999855 9999988754
No 48
>PRK02710 plastocyanin; Provisional
Probab=94.61 E-value=0.12 Score=42.01 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=48.2
Q ss_pred eeecCCcEEEEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeE
Q 038598 274 TFVSNGTKALDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWF 353 (392)
Q Consensus 274 ~~~~~g~~v~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~ 353 (392)
+.++.|+.|+.++ .+...|-+.+.+. +.+ ...-..+.+|+...+.|.. ||.+.
T Consensus 49 i~v~~Gd~V~~~N-~~~~~H~v~~~~~---------~~~---------------~~~~~~~~pg~t~~~tF~~--~G~y~ 101 (119)
T PRK02710 49 LTIKAGDTVKWVN-NKLAPHNAVFDGA---------KEL---------------SHKDLAFAPGESWEETFSE--AGTYT 101 (119)
T ss_pred EEEcCCCEEEEEE-CCCCCceEEecCC---------ccc---------------cccccccCCCCEEEEEecC--CEEEE
Confidence 5688898885543 2446777654321 100 0112457788888877765 99999
Q ss_pred EeecchhhhhcCcceEEEE
Q 038598 354 MHCHFDVHLSWGLRMAWIV 372 (392)
Q Consensus 354 ~HCHi~~H~~~Gm~~~~~v 372 (392)
|+|= -|...||-+.|.|
T Consensus 102 y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 102 YYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEcC--CCccCCcEEEEEE
Confidence 9997 8999999999987
No 49
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=94.28 E-value=0.28 Score=40.47 Aligned_cols=61 Identities=23% Similarity=0.215 Sum_probs=49.1
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
+..++|++|.+++|++.|.... ...+.++++. -...|.+||+..+-+.+++. |.|+..+.
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~~-~H~f~i~~~g----------------is~~I~pGet~TitF~adKp---G~Y~y~C~ 119 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSPI-SEGFSIDAYG----------------ISEVIKAGETKTISFKADKA---GAFTIWCQ 119 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCCC-ccceEECCCC----------------cceEECCCCeEEEEEECCCC---EEEEEeCC
Confidence 5689999999999999998874 4556665541 15678999999999999887 99999876
Q ss_pred c
Q 038598 124 P 124 (392)
Q Consensus 124 ~ 124 (392)
.
T Consensus 120 ~ 120 (135)
T TIGR03096 120 L 120 (135)
T ss_pred C
Confidence 5
No 50
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.14 E-value=0.1 Score=41.20 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEeCCCcEEEEEEEeCCceeeEEeecchh
Q 038598 332 VGVPSGGWVAIRFLADNPGVWFMHCHFDV 360 (392)
Q Consensus 332 v~v~~~~~~~ir~~~dnpG~w~~HCHi~~ 360 (392)
..+.+|+..++.|.++.||.|-|+|-+-.
T Consensus 68 ~~l~~g~~~~~~f~~~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 68 KVLPPGETATVTFTPLKPGEYEFYCTMHP 96 (104)
T ss_dssp EEE-TT-EEEEEEEE-S-EEEEEB-SSS-
T ss_pred EEECCCCEEEEEEcCCCCEEEEEEcCCCC
Confidence 77889999999999999999999999544
No 51
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=93.76 E-value=0.32 Score=38.34 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=41.8
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
+..+++++|+.++|.+.|.+... ..|.+++ .. -...|.+|+...+.+...+. |.|.+.+.
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~---------------~~-~~~~l~~g~~~~~~f~~~~~---G~y~~~C~ 93 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRP-HEFVIPD---------------LG-ISKVLPPGETATVTFTPLKP---GEYEFYCT 93 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGG---------------GT-EEEEE-TT-EEEEEEEE-S----EEEEEB-S
T ss_pred cCEEEEcCCCeEEEEEEECCCCc-EEEEECC---------------Cc-eEEEECCCCEEEEEEcCCCC---EEEEEEcC
Confidence 46899999999999999998774 5566655 11 22678899999999876665 89988876
Q ss_pred c
Q 038598 124 P 124 (392)
Q Consensus 124 ~ 124 (392)
.
T Consensus 94 ~ 94 (104)
T PF13473_consen 94 M 94 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 52
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=92.00 E-value=0.87 Score=36.68 Aligned_cols=36 Identities=25% Similarity=0.486 Sum_probs=30.0
Q ss_pred eCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEe
Q 038598 334 VPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 334 v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~ 373 (392)
..+|+...+.| +.||.+.|+|- .|...||-+.|.|+
T Consensus 80 ~~~G~t~s~Tf--~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 80 SEEGTTYEHTF--EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCCCEEEEEe--cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 35677777555 78999999998 99999999999873
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=88.26 E-value=0.51 Score=38.11 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEecCC
Q 038598 336 SGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLDGE 376 (392)
Q Consensus 336 ~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~~~ 376 (392)
+++...+ +++.+|.+.|+|- .|...||-+.+.|.++.
T Consensus 54 ~g~~~~~--tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 54 INEEYTV--TVTEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred CCCEEEE--EeCCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 4666554 4478999999998 99999999999997643
No 54
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=87.45 E-value=3.9 Score=35.93 Aligned_cols=78 Identities=13% Similarity=0.166 Sum_probs=51.1
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCe-EEEEEcCc---eEEEEEeCCcccc-----ceEEeEEEecCCCeEEEEEEcCCCCC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDE-LFFSIANH---TLTVVEADAIYVK-----PFETNILVIAPGQTTNVLLKTNPNPP 114 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~-~~l~id~h---~m~VIa~DG~~v~-----P~~v~~l~l~pGeRydVlv~~~~~~~ 114 (392)
..++-+.+|-++.++++|.+.... +.+-..+- ..-.|+.||.-+. +-....--|..||++..+..... +
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~-a- 162 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLP-A- 162 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCC-C-
Confidence 578999999999999999986533 22222221 2457788886541 11112235679999997764333 3
Q ss_pred CCceEEEEec
Q 038598 115 NASFFMLARP 124 (392)
Q Consensus 115 ~g~y~i~~~~ 124 (392)
|.||+.+..
T Consensus 163 -G~YwlvC~i 171 (196)
T PF06525_consen 163 -GYYWLVCGI 171 (196)
T ss_pred -ceEEEEccC
Confidence 999999764
No 55
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=86.55 E-value=1.7 Score=36.56 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=53.5
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEc--C----ceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCc
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIA--N----HTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNAS 117 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id--~----h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~ 117 (392)
...++++.|+++|+-+-|.+-.-. .+.++ + |.-..+.+| ..+=-..+.+.|.||+.-.+++++.++ |.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~h-ef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~~---g~ 135 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKH-EFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTGA---GK 135 (158)
T ss_pred CCcccccCCcEEeeeecCcccceE-EEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecCC---cc
Confidence 457899999999999999987643 34443 2 222233333 222224568999999999999999987 89
Q ss_pred eEEEEec
Q 038598 118 FFMLARP 124 (392)
Q Consensus 118 y~i~~~~ 124 (392)
|.+++..
T Consensus 136 ye~~C~i 142 (158)
T COG4454 136 YEFACNI 142 (158)
T ss_pred EEEEecC
Confidence 9999864
No 56
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=86.37 E-value=3.6 Score=30.84 Aligned_cols=71 Identities=17% Similarity=0.122 Sum_probs=43.2
Q ss_pred eeecCCcEEEEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeE
Q 038598 274 TFVSNGTKALDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWF 353 (392)
Q Consensus 274 ~~~~~g~~v~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~ 353 (392)
+.+..|+.|...+ .+...|-++++.-.+ +.. .+.. ..+.+|.... ++++.||.|.
T Consensus 13 i~v~~GdtVt~~N-~d~~~Hnv~~~~g~~-------~~~--------------~~~~-~~~~~g~~~~--~tf~~~G~y~ 67 (83)
T TIGR02657 13 LHVKVGDTVTWIN-REAMPHNVHFVAGVL-------GEA--------------ALKG-PMMKKEQAYS--LTFTEAGTYD 67 (83)
T ss_pred EEECCCCEEEEEE-CCCCCccEEecCCCC-------ccc--------------cccc-cccCCCCEEE--EECCCCEEEE
Confidence 5688899885544 334677776543110 100 0111 2245666666 5668899999
Q ss_pred EeecchhhhhcCcceEEEEe
Q 038598 354 MHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 354 ~HCHi~~H~~~Gm~~~~~v~ 373 (392)
|||=+ |. +|.+.+.|+
T Consensus 68 y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 68 YHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred EEcCC--CC--CCeEEEEEC
Confidence 99985 65 488888763
No 57
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=85.50 E-value=3.1 Score=32.37 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=39.9
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCc-cccc-eEEeEEEecCCCeEEEEEEcCCCCCCCceEEE
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAI-YVKP-FETNILVIAPGQTTNVLLKTNPNPPNASFFML 121 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~-~v~P-~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~ 121 (392)
+..+++++|.+++|. |.+.. ...+.++....- +|. ...+ ...+.+.+.||+.+++-++ . + |.|...
T Consensus 16 P~~i~v~~G~~V~~~--N~~~~-~H~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pG~t~~~tF~--~-~--G~y~y~ 83 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKGG-PHNVVFDEDAVP----AGVKELAKSLSHKDLLNSPGESYEVTFS--T-P--GTYTFY 83 (99)
T ss_pred CCEEEECCCCEEEEE--ECCCC-CceEEECCCCCc----cchhhhcccccccccccCCCCEEEEEeC--C-C--EEEEEE
Confidence 457999999987665 76532 233333321100 010 1111 1235688999999999555 3 3 899888
Q ss_pred Ee
Q 038598 122 AR 123 (392)
Q Consensus 122 ~~ 123 (392)
+.
T Consensus 84 C~ 85 (99)
T TIGR02656 84 CE 85 (99)
T ss_pred cC
Confidence 76
No 58
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=82.90 E-value=22 Score=28.40 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred ceEEEEEeCCccc--cceEEeEEEecCCCeEEEEEEcCCC
Q 038598 75 HTLTVVEADAIYV--KPFETNILVIAPGQTTNVLLKTNPN 112 (392)
Q Consensus 75 h~m~VIa~DG~~v--~P~~v~~l~l~pGeRydVlv~~~~~ 112 (392)
++++|-.+.+..- .+.....+.|.+|..|.+++.-...
T Consensus 45 ~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~~ 84 (122)
T PF14344_consen 45 YTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTAA 84 (122)
T ss_pred EEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCCC
Confidence 4455544444322 2344456666667777766665443
No 59
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=80.18 E-value=4 Score=33.19 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=51.9
Q ss_pred ccEEEEeCC-CEEEEEEEecCCCC----eEEEEEc-CceEEEEEe-------CCccccc----eEEeEEEecCCCeEEEE
Q 038598 44 TYKLKVKPG-KTYMLRLINTALND----ELFFSIA-NHTLTVVEA-------DAIYVKP----FETNILVIAPGQTTNVL 106 (392)
Q Consensus 44 ~~~~~v~~G-~~yRlRlINa~~~~----~~~l~id-~h~m~VIa~-------DG~~v~P----~~v~~l~l~pGeRydVl 106 (392)
...|+|+++ +...+.|-|.|..- ..++-|- ..++.-|+. |-.||.+ +.+.+=+|++||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 357999985 88999999998542 1222231 123443333 4456643 23456689999999999
Q ss_pred EEcCCCCCCCceEEEEe
Q 038598 107 LKTNPNPPNASFFMLAR 123 (392)
Q Consensus 107 v~~~~~~~~g~y~i~~~ 123 (392)
++++...+|++|...++
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99876434467877765
No 60
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=77.46 E-value=28 Score=26.11 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=36.4
Q ss_pred EEEEEEecCCCCeEEEEEcC-c--eEEEEEeCCcccc------c--eEEeEEEecCCCeEEEEEEcCCCCC-CCceEEEE
Q 038598 55 YMLRLINTALNDELFFSIAN-H--TLTVVEADAIYVK------P--FETNILVIAPGQTTNVLLKTNPNPP-NASFFMLA 122 (392)
Q Consensus 55 yRlRlINa~~~~~~~l~id~-h--~m~VIa~DG~~v~------P--~~v~~l~l~pGeRydVlv~~~~~~~-~g~y~i~~ 122 (392)
..|++.|.+.. .+.|.+.. . .+.|...+|..|- . .......|.|||...+-.+.+.... .|.|.+.|
T Consensus 4 ~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 45777777665 34455543 2 4666666776662 1 2346789999999998888876431 38898764
No 61
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=76.11 E-value=7.9 Score=34.41 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=32.0
Q ss_pred eCCCcEEEEEEEeCCceeeEEeecchhhh-hcCcceEEEEec
Q 038598 334 VPSGGWVAIRFLADNPGVWFMHCHFDVHL-SWGLRMAWIVLD 374 (392)
Q Consensus 334 v~~~~~~~ir~~~dnpG~w~~HCHi~~H~-~~Gm~~~~~v~~ 374 (392)
+.||....+.|+++.||.+...|--.-.. ...|...+.|.+
T Consensus 151 a~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 151 AIPGQYNALWFNADEPGVYYGYCAELCGAGHSLMLFKVVVVE 192 (201)
T ss_pred ecCCcEEEEEEEeCCCEEEEEEehhhCCcCccCCeEEEEEEC
Confidence 55789999999999999999999973322 367777777754
No 62
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=75.61 E-value=10 Score=26.91 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=30.5
Q ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEE
Q 038598 47 LKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNV 105 (392)
Q Consensus 47 ~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydV 105 (392)
|++.+|+..+||.-.+ ..|.+.+..++|.. +|. .+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 6788999999995433 33777777877765 552 34455666666543
No 63
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=74.64 E-value=15 Score=26.24 Aligned_cols=66 Identities=11% Similarity=0.275 Sum_probs=37.7
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
++.|++++|+++++.+-+.+. +..|+|...+|..+....... -..|..--+-+...+. |.|.|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~~---GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPAA---GTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESSS---EEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCCC---EEEEEEEE
Confidence 578999999998888765554 334777777765443211111 0012222222344333 88988875
No 64
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=74.37 E-value=23 Score=28.61 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=46.2
Q ss_pred eeecCCcEEEEcccCCCCCCceeecCCceEEEEeccCCCCCCCCCCCccCCCCCccceEEeCCCcEEEEEEEeCCceeeE
Q 038598 274 TFVSNGTKALDTSILGAESHPLHLHGYNVYVVGQGFGNFDPKNDPKKFNLIDPVERNTVGVPSGGWVAIRFLADNPGVWF 353 (392)
Q Consensus 274 ~~~~~g~~v~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~~p~~rDtv~v~~~~~~~ir~~~dnpG~w~ 353 (392)
+.++.|+.|.......+..|-|.+-+...++ .+.||....+.|+++.||.+-
T Consensus 48 l~lp~g~~v~~~ltS~DViHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~~~~~G~y~ 99 (120)
T PF00116_consen 48 LVLPAGQPVRFHLTSEDVIHSFWIPELGIKM----------------------------DAIPGRTNSVTFTPDKPGTYY 99 (120)
T ss_dssp EEEETTSEEEEEEEESSS-EEEEETTCTEEE----------------------------EEBTTCEEEEEEEESSSEEEE
T ss_pred ecccccceEeEEEEcCCccccccccccCccc----------------------------ccccccceeeeeeeccCCcEE
Confidence 6788898884332234577887776554333 346788999999999999999
Q ss_pred EeecchhhhhcC-cceEEE
Q 038598 354 MHCHFDVHLSWG-LRMAWI 371 (392)
Q Consensus 354 ~HCHi~~H~~~G-m~~~~~ 371 (392)
..|...=..... |...+.
T Consensus 100 ~~C~e~CG~gH~~M~~~v~ 118 (120)
T PF00116_consen 100 GQCAEYCGAGHSFMPGKVI 118 (120)
T ss_dssp EEE-SSSSTTGGG-EEEEE
T ss_pred EcCccccCcCcCCCeEEEE
Confidence 999876654433 333433
No 65
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.95 E-value=25 Score=35.17 Aligned_cols=77 Identities=14% Similarity=0.273 Sum_probs=54.4
Q ss_pred ccEEEEeCC--CEEEEEEEecCCC--CeEEEEEcCceEEEEEeCCccccceEEeEEEecCCC--eEEEEEEcCCCCCCCc
Q 038598 44 TYKLKVKPG--KTYMLRLINTALN--DELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQ--TTNVLLKTNPNPPNAS 117 (392)
Q Consensus 44 ~~~~~v~~G--~~yRlRlINa~~~--~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGe--RydVlv~~~~~~~~g~ 117 (392)
...+++++| +..|++|-|.|.. .-+.|.|++-.=+=|++|+.-+ +. |.||+ ++++-|+++.++..|+
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~s--L~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----PS--LEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----cc--cCCCCcceEEEEEEcCCCCCCCc
Confidence 467889999 5778999999954 4588888877667788877633 22 33454 5666777777665699
Q ss_pred eEEEEeccCC
Q 038598 118 FFMLARPYFT 127 (392)
Q Consensus 118 y~i~~~~~~~ 127 (392)
|.+..+.-.+
T Consensus 461 Y~i~i~~ksD 470 (513)
T COG1470 461 YRITITAKSD 470 (513)
T ss_pred EEEEEEEeec
Confidence 9988776443
No 66
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=68.77 E-value=36 Score=25.97 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=43.3
Q ss_pred EeCCCEEEEEEE--ecCCCCeEEEEEcCc--eEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEec
Q 038598 49 VKPGKTYMLRLI--NTALNDELFFSIANH--TLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 49 v~~G~~yRlRlI--Na~~~~~~~l~id~h--~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~ 124 (392)
-+||+++.||.+ +... . .-...++ .++|..-+|..+.-... ........++.-+.+++.+..|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 489999999998 6662 1 0112233 36666666766632222 244678888888999887666999999886
No 67
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=66.93 E-value=51 Score=26.87 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=44.2
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc-------cceEEeEEEecCCCeEEEEEEcCCCC
Q 038598 46 KLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYV-------KPFETNILVIAPGQTTNVLLKTNPNP 113 (392)
Q Consensus 46 ~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v-------~P~~v~~l~l~pGeRydVlv~~~~~~ 113 (392)
.|++...-.|+|++-.- ...+|.|||.. ||+.++..- .+.....+.|..|++|+|-|......
T Consensus 53 ~~~~~~~G~y~f~~~~~---d~~~l~idg~~--vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~ 122 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSD---DGARLWIDGKL--VIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRG 122 (145)
T ss_dssp EEEESSSEEEEEEEEES---SEEEEEETTEE--EEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECS
T ss_pred EEecccCceEEEEEEec---ccEEEEECCEE--EEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECC
Confidence 46676666899998833 35778898876 577776543 34566788999999999999986643
No 68
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=63.59 E-value=58 Score=26.38 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=39.5
Q ss_pred EEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc-cceEEeEEEecCCCeEEEEEEcCCCC
Q 038598 46 KLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYV-KPFETNILVIAPGQTTNVLLKTNPNP 113 (392)
Q Consensus 46 ~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v-~P~~v~~l~l~pGeRydVlv~~~~~~ 113 (392)
.|+++..-.|+|.+.. ....+|.|+|.. ||..++..- .+.....+.|..|++|.|-|+.....
T Consensus 51 ~i~~~~~G~y~f~~~~---~~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~ 114 (136)
T smart00758 51 YLKPPEDGEYTFSITS---DDGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAG 114 (136)
T ss_pred EEECCCCccEEEEEEc---CCcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCC
Confidence 3555555578998843 334678888753 555544322 22334468888888888888876543
No 69
>PRK02888 nitrous-oxide reductase; Validated
Probab=59.54 E-value=36 Score=35.66 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=23.5
Q ss_pred EEecCCCeEEEEEEcCCCCCCCceEEEEec
Q 038598 95 LVIAPGQTTNVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 95 l~l~pGeRydVlv~~~~~~~~g~y~i~~~~ 124 (392)
+.+.||+.-.|-+++++. |.||+.+.-
T Consensus 591 ~dv~PG~t~svtF~adkP---Gvy~~~Cte 617 (635)
T PRK02888 591 MEVAPQATASVTFTADKP---GVYWYYCTW 617 (635)
T ss_pred EEEcCCceEEEEEEcCCC---EEEEEECCc
Confidence 567799999999999887 999999874
No 70
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=59.35 E-value=73 Score=23.88 Aligned_cols=67 Identities=21% Similarity=0.295 Sum_probs=41.5
Q ss_pred EEeCCCEEE--EEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEE-EecCCCeEEEEEEcCCCCCCCceEEEEec
Q 038598 48 KVKPGKTYM--LRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNIL-VIAPGQTTNVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 48 ~v~~G~~yR--lRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l-~l~pGeRydVlv~~~~~~~~g~y~i~~~~ 124 (392)
.+.+|+..+ +.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+...... .|.|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~-~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPS-PGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS--CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCC-CCeEEEEEEE
Confidence 456677665 77899987754433332 34566555 33445 789999999888886642 2888888765
No 71
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=58.11 E-value=16 Score=29.99 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=30.5
Q ss_pred ceEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEe
Q 038598 330 NTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVL 373 (392)
Q Consensus 330 Dtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~ 373 (392)
+.+...++.+...-|. -||.+.|.|- .|..+||-+.+.|+
T Consensus 88 ~~~~~~~~~s~~~Tfe--~~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 88 GTLKAGINESFTHTFE--TPGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cccccCCCcceEEEec--ccceEEEEec--cCCCCCcEEEEEeC
Confidence 3444445566665554 4999999997 89999999999885
No 72
>PRK02710 plastocyanin; Provisional
Probab=56.74 E-value=48 Score=26.62 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=38.3
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
+..+++++|.+++| +|.+.. ..++.++ |. +......+.+.+|+.+++.++. + |.|...+.
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~----------~~--~~~~~~~~~~~pg~t~~~tF~~---~--G~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA-PHNAVFD----------GA--KELSHKDLAFAPGESWEETFSE---A--GTYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC-CceEEec----------CC--ccccccccccCCCCEEEEEecC---C--EEEEEEcC
Confidence 46799999998765 575432 2334333 21 1112234678999999977664 3 88888876
Q ss_pred c
Q 038598 124 P 124 (392)
Q Consensus 124 ~ 124 (392)
.
T Consensus 106 ~ 106 (119)
T PRK02710 106 P 106 (119)
T ss_pred C
Confidence 3
No 73
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=54.03 E-value=56 Score=25.13 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=41.5
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc--cc----eEEeEEEecCCCeEEEEEEcCCCCCCCc
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYV--KP----FETNILVIAPGQTTNVLLKTNPNPPNAS 117 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v--~P----~~v~~l~l~pGeRydVlv~~~~~~~~g~ 117 (392)
+..+++++|++++ ++|.... +|++++.+ |+... +. ..-....+.+|+.+++-++ + + |.
T Consensus 16 P~~i~V~~G~tV~--~~n~~~~--------~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~-~--G~ 79 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNNDSM--------PHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--K-P--GT 79 (99)
T ss_dssp SSEEEEETTEEEE--EEEESSS--------SBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--S-S--EE
T ss_pred CCEEEECCCCEEE--EEECCCC--------CceEEEec-ccccccccccccCccccceecCCCCEEEEEeC--C-C--eE
Confidence 4689999998765 5665221 35554444 43211 11 1116778999999999877 3 3 88
Q ss_pred eEEEEec
Q 038598 118 FFMLARP 124 (392)
Q Consensus 118 y~i~~~~ 124 (392)
|...+.+
T Consensus 80 y~y~C~P 86 (99)
T PF00127_consen 80 YEYYCTP 86 (99)
T ss_dssp EEEEETT
T ss_pred EEEEcCC
Confidence 9888864
No 74
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=53.28 E-value=1.2e+02 Score=24.44 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=42.9
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
...+.++.|+.+||+|-+.-.. .-|+|.+..+. +.+-||+.-.+-+++++. |.|++++.
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DVi--Hsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~~---G~y~~~C~ 103 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDVI--HSFWIPELGIK----------------MDAIPGRTNSVTFTPDKP---GTYYGQCA 103 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEESSS---EEEEEEE-
T ss_pred cceecccccceEeEEEEcCCcc--ccccccccCcc----------------cccccccceeeeeeeccC---CcEEEcCc
Confidence 3589999999999999885444 44556554432 345578888888888776 99999987
Q ss_pred c
Q 038598 124 P 124 (392)
Q Consensus 124 ~ 124 (392)
-
T Consensus 104 e 104 (120)
T PF00116_consen 104 E 104 (120)
T ss_dssp S
T ss_pred c
Confidence 4
No 75
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=52.03 E-value=26 Score=30.91 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=34.0
Q ss_pred eCCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEec
Q 038598 334 VPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLD 374 (392)
Q Consensus 334 v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~ 374 (392)
|.+|.....-+..-.||.+.|=|-+.-|...||-..|.|.+
T Consensus 147 I~~G~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 147 ISSGQSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred ccCCceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 34566666666666799999999999999999999998864
No 76
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=50.17 E-value=65 Score=25.60 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=28.1
Q ss_pred EEEEEEEecCCC-CeEEEEEcCce-EEEEEeCCccccceEEeEEEecCCCeEEEEEEcC
Q 038598 54 TYMLRLINTALN-DELFFSIANHT-LTVVEADAIYVKPFETNILVIAPGQTTNVLLKTN 110 (392)
Q Consensus 54 ~yRlRlINa~~~-~~~~l~id~h~-m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~ 110 (392)
.|+|+|+|-+.. ..+.|+++|.+ +.+. . ....+.|.+|+..++-+...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEEE
Confidence 788999999966 45888888742 3330 1 23567888888777665553
No 77
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=50.05 E-value=48 Score=30.51 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=31.2
Q ss_pred EeCCCcEEEEEEEeCCceeeEEeecchhhhhcCcc-eEEEEe
Q 038598 333 GVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLR-MAWIVL 373 (392)
Q Consensus 333 ~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~-~~~~v~ 373 (392)
.+.||-...+.++++.+|.+..+|+..--....+| ..+.|.
T Consensus 170 d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~vv 211 (247)
T COG1622 170 DAIPGMTTELWLTANKPGTYRGICAEYCGPGHSFMRFKVIVV 211 (247)
T ss_pred eecCCceEEEEEecCCCeEEEEEcHhhcCCCcccceEEEEEE
Confidence 34567888899999999999999998876655554 445454
No 78
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=50.04 E-value=29 Score=30.18 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=33.6
Q ss_pred CCCcEEEEEEEeCCceeeEEeecchhhhhcCcceEEEEec
Q 038598 335 PSGGWVAIRFLADNPGVWFMHCHFDVHLSWGLRMAWIVLD 374 (392)
Q Consensus 335 ~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm~~~~~v~~ 374 (392)
.+|....+-+..--||.+-+=|-+.-|...||-+.+.|-.
T Consensus 147 ~~Gqs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 147 SSGHSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred cccceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 3566666777778999999999999999999999998753
No 79
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=49.48 E-value=99 Score=22.45 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=30.2
Q ss_pred EeCCC--EEEEEEEecCCCC--eEEEEEcCceEEEEEeCCccc--cceEEeEEEecCCCeEE--EEEEcCCCCCCCceEE
Q 038598 49 VKPGK--TYMLRLINTALND--ELFFSIANHTLTVVEADAIYV--KPFETNILVIAPGQTTN--VLLKTNPNPPNASFFM 120 (392)
Q Consensus 49 v~~G~--~yRlRlINa~~~~--~~~l~id~h~m~VIa~DG~~v--~P~~v~~l~l~pGeRyd--Vlv~~~~~~~~g~y~i 120 (392)
+++|+ .+++.+-|.+... .+.|+++. =+|=.+ .|..+. .|.|||... +-|+.+.....|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 35665 4468888988553 24444432 233222 333333 788996555 4455555544489998
Q ss_pred EEec
Q 038598 121 LARP 124 (392)
Q Consensus 121 ~~~~ 124 (392)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 80
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=46.92 E-value=28 Score=23.12 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCCccceEE-eCCCcEEEEEEEeCCceeeEEeecchhhhhc
Q 038598 324 IDPVERNTVG-VPSGGWVAIRFLADNPGVWFMHCHFDVHLSW 364 (392)
Q Consensus 324 ~~p~~rDtv~-v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~ 364 (392)
..|+.+-+.. .+.|+...+.++......+=+||...-|...
T Consensus 4 ~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 4 SKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 4454444333 4568889999999999999999999999753
No 81
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=41.13 E-value=68 Score=24.52 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=23.5
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc--c-ceEE-eEEEecCCCeEEE
Q 038598 54 TYMLRLINTALNDELFFSIANHTLTVVEADAIYV--K-PFET-NILVIAPGQTTNV 105 (392)
Q Consensus 54 ~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v--~-P~~v-~~l~l~pGeRydV 105 (392)
.|++||-|.+... +.|-...+.|...||..- + +=.+ ..=+|.|||.|..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 5889999999883 223233445555554221 1 1011 1226888886654
No 82
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=37.64 E-value=39 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=20.4
Q ss_pred eCCCcEEEEEEEe-CCc---eeeEEeecc
Q 038598 334 VPSGGWVAIRFLA-DNP---GVWFMHCHF 358 (392)
Q Consensus 334 v~~~~~~~ir~~~-dnp---G~w~~HCHi 358 (392)
|+||.++.|.++. .|| |.|+|+|-.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 6789999999964 565 899999864
No 83
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=37.20 E-value=1.8e+02 Score=22.02 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=36.3
Q ss_pred EEeCCCEEE--EEEEecCCCC-eEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcC-CCCCCCceE
Q 038598 48 KVKPGKTYM--LRLINTALND-ELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTN-PNPPNASFF 119 (392)
Q Consensus 48 ~v~~G~~yR--lRlINa~~~~-~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~-~~~~~g~y~ 119 (392)
.+..|++|. +.|.|.|... .+++......-..+ -++| ..-.|+||+..++-|++. .... |.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~-----~v~~---~~g~l~PG~~~~~~V~~~~~~~~-g~~~ 81 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFF-----SVEP---PSGFLAPGESVELEVTFSPTKPL-GDYE 81 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCE-----EEEC---CCCEECCCCEEEEEEEEEeCCCC-ceEE
Confidence 355677775 9999999763 24444433100000 1122 233599999999999987 3322 5554
No 84
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=36.68 E-value=63 Score=29.40 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=31.0
Q ss_pred cEEEEeCCCEEEEEEEecCCC--CeEEEEEcCceEEEEEeCCcccc
Q 038598 45 YKLKVKPGKTYMLRLINTALN--DELFFSIANHTLTVVEADAIYVK 88 (392)
Q Consensus 45 ~~~~v~~G~~yRlRlINa~~~--~~~~l~id~h~m~VIa~DG~~v~ 88 (392)
..+=+++| +|.||+|.-+-. .-....|++ -++++|+|+.+-+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~N-GeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDN-GEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCC-ceEEEEcCCceeE
Confidence 34678897 999999987733 224455544 5899999999875
No 85
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=34.35 E-value=1.4e+02 Score=27.18 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=39.3
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNP 111 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~ 111 (392)
+|.++++||+.+.+|++..+. +-.|...++-+-++..+-++...+.|.|+...|.=+.+.-..
T Consensus 75 PPl~rl~pg~~q~vRii~~~~-----lp~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyRP~~ 137 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKSG-----SPLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQPAA 137 (230)
T ss_pred CCeEEECCCCceEEEEEECCC-----CCCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEeCCC
Confidence 578999999999999997753 122444455555555553322234567777777766665443
No 86
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=33.83 E-value=1.3e+02 Score=24.54 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=30.7
Q ss_pred EEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc--c-ceEE-eEEEecCCCeEEEE
Q 038598 54 TYMLRLINTALNDELFFSIANHTLTVVEADAIYV--K-PFET-NILVIAPGQTTNVL 106 (392)
Q Consensus 54 ~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v--~-P~~v-~~l~l~pGeRydVl 106 (392)
.|+.||-|-+... +.+-.....|...||..- + +=.+ ..=+|.|||.|..-
T Consensus 32 ~Y~ItI~N~~~~~---vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRVP---VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCCC---EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 6789999988653 444455677776766532 1 1112 23378999977653
No 87
>PF06775 Seipin: Putative adipose-regulatory protein (Seipin); InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=31.84 E-value=59 Score=28.76 Aligned_cols=51 Identities=18% Similarity=0.228 Sum_probs=29.1
Q ss_pred EEEecCCCeEEEEEEcCCCC-----CCCceEEEEeccCCCCCcCCCcceEEEEEec
Q 038598 94 ILVIAPGQTTNVLLKTNPNP-----PNASFFMLARPYFTGMGTFDNSTVAAILEYE 144 (392)
Q Consensus 94 ~l~l~pGeRydVlv~~~~~~-----~~g~y~i~~~~~~~~~~~~~~~~~~aiL~y~ 144 (392)
.-.|.+||.|||.|++.=+. .-|.|.+.++..+...........-++|+|.
T Consensus 50 ~~~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~l~~s~Rp~~l~y~ 105 (199)
T PF06775_consen 50 ARLLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKVLASSSRPAMLPYR 105 (199)
T ss_pred ccccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcEEEEEecceecccC
Confidence 45688999999998884211 1277887777543321111122344555554
No 88
>COG3241 Azurin [Energy production and conversion]
Probab=31.79 E-value=61 Score=26.21 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCccccce----EEeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 83 DAIYVKPF----ETNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 83 DG~~v~P~----~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
|-.||+|- .++.-+|+.|||-++-++..+-..|-.|..-++
T Consensus 91 d~dYvkpdD~RViAHTklIGgGE~~S~Tfd~~kL~~g~~Y~FfCt 135 (151)
T COG3241 91 DTDYVKPDDARVIAHTKLIGGGEETSLTFDPAKLADGVEYKFFCT 135 (151)
T ss_pred ccccCCCCCcceEEEeeeecCCccceEecCHHHhcCCceEEEEEe
Confidence 33567653 346779999999999999887655446766654
No 89
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=31.71 E-value=1.4e+02 Score=21.66 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=25.3
Q ss_pred cEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccc
Q 038598 45 YKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKP 89 (392)
Q Consensus 45 ~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P 89 (392)
..-.+++|+.+.| .....+.|.+.+-.-.-|..||..+.+
T Consensus 22 ~~~~l~~G~~~~~-----~~~~~~~i~iGna~~v~v~~nG~~~~~ 61 (77)
T PF13464_consen 22 FSGTLKAGETKTF-----EGKEPFRIRIGNAGAVEVTVNGKPVDL 61 (77)
T ss_pred eeeeeCCCcEEEE-----eCCCCEEEEEeCCCcEEEEECCEECCC
Confidence 4556677776666 344456677766666666777777654
No 90
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=31.36 E-value=1.7e+02 Score=29.50 Aligned_cols=51 Identities=18% Similarity=0.322 Sum_probs=33.7
Q ss_pred CEEEEEEEecCCC-CeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCC
Q 038598 53 KTYMLRLINTALN-DELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNP 111 (392)
Q Consensus 53 ~~yRlRlINa~~~-~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~ 111 (392)
-.|+++|+|.+.. ..+.|+++|.+-.-+.. +. +.+.+.+||..++.|....
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~------~~--~~i~v~~g~~~~~~v~v~~ 399 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEG------PG--APIHVKAGEKVKLPVFLRT 399 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEc------CC--ceEEECCCCEEEEEEEEEe
Confidence 3788999998855 56888887743211111 11 2789999999877666543
No 91
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=30.92 E-value=38 Score=23.45 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=29.1
Q ss_pred EEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcC
Q 038598 57 LRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTN 110 (392)
Q Consensus 57 lRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~ 110 (392)
.++.+.+....+.+.++++. .+.+. +.+.....+-|.+|++.-+.++..
T Consensus 12 ~~ie~~g~~~~v~~~~~~~~-~l~a~----it~~~~~~L~L~~G~~V~~~ik~~ 60 (64)
T PF03459_consen 12 ESIENLGSEVEVTLDLGGGE-TLTAR----ITPESAEELGLKPGDEVYASIKAS 60 (64)
T ss_dssp EEEEESSSEEEEEEEETTSE-EEEEE----EEHHHHHHCT-STT-EEEEEE-GG
T ss_pred EEEEECCCeEEEEEEECCCC-EEEEE----EcHHHHHHcCCCCCCEEEEEEehh
Confidence 44566666666667776665 22222 234445678899999999999874
No 92
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=30.87 E-value=3e+02 Score=22.52 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=34.0
Q ss_pred CCceEEEcCCcCCCCCCCCCCccEEEEeCCC----EEEEEEEecCCCCeEEEEEcCc-eEEEE
Q 038598 23 VSEAYTFNGLPGPTYNCSAKDTYKLKVKPGK----TYMLRLINTALNDELFFSIANH-TLTVV 80 (392)
Q Consensus 23 ~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~----~yRlRlINa~~~~~~~l~id~h-~m~VI 80 (392)
.++.+.++|.+ |.| .-.-..+||+ .+|+++.|--....+..++... ++.++
T Consensus 13 kG~~i~~~g~p---~~V----~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~~ 68 (129)
T PRK03999 13 EGSYVVIDGEP---CKI----VEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVP 68 (129)
T ss_pred CCCEEEECCEE---EEE----EEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceeee
Confidence 58889999975 111 0112367887 7899999998888877777543 34443
No 93
>COG5033 TFG3 Transcription initiation factor IIF, auxiliary subunit [Transcription]
Probab=30.36 E-value=33 Score=30.50 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.6
Q ss_pred CCceEEEEeccCCCCC
Q 038598 299 GYNVYVVGQGFGNFDP 314 (392)
Q Consensus 299 G~~F~Vl~~g~g~~~~ 314 (392)
-+.|+|..+|+|.|+-
T Consensus 74 ~pPFeI~EtGWGEF~i 89 (225)
T COG5033 74 SPPFEIKETGWGEFDI 89 (225)
T ss_pred CCCcEEEecccccceE
Confidence 4679999999999874
No 94
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.90 E-value=3.4e+02 Score=23.97 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCcEEEEEEEeCCceeeEEeecchhhh-hcCcceEEEEec
Q 038598 335 PSGGWVAIRFLADNPGVWFMHCHFDVHL-SWGLRMAWIVLD 374 (392)
Q Consensus 335 ~~~~~~~ir~~~dnpG~w~~HCHi~~H~-~~Gm~~~~~v~~ 374 (392)
-||....+.|.++.+|.+...|.-.--. ...|-..+.|.+
T Consensus 151 ~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~~ 191 (194)
T MTH00047 151 IPGRINHLFFCPDRHGVFVGYCSELCGVGHSYMPIVIEVVD 191 (194)
T ss_pred CCCceEEEEEEcCCCEEEEEEeehhhCcCcccCcEEEEEEc
Confidence 4788899999999999999999976654 345555555543
No 95
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=29.71 E-value=29 Score=28.66 Aligned_cols=37 Identities=38% Similarity=0.586 Sum_probs=26.8
Q ss_pred EeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccc
Q 038598 49 VKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYV 87 (392)
Q Consensus 49 v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v 87 (392)
...|.|+|||||.---+.- |-=..|.+||+++|.+.+
T Consensus 120 Y~~GaRVrlRl~DlELs~r--FLGs~~D~T~LEAdavLl 156 (173)
T KOG4078|consen 120 YQKGARVRLRLIDLELSER--FLGSKHDLTLLEADAVLL 156 (173)
T ss_pred hhcCceEEEEEcChhHhhh--hhcCCccceEEecceeee
Confidence 3568999999998653321 122468899999999877
No 96
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=28.95 E-value=2.9e+02 Score=23.69 Aligned_cols=38 Identities=16% Similarity=0.220 Sum_probs=27.4
Q ss_pred CCcEEEEEEEeCCceeeEEeecchhhhhcC-cceEEEEe
Q 038598 336 SGGWVAIRFLADNPGVWFMHCHFDVHLSWG-LRMAWIVL 373 (392)
Q Consensus 336 ~~~~~~ir~~~dnpG~w~~HCHi~~H~~~G-m~~~~~v~ 373 (392)
||....+.|.++.+|.+...|.-.--.... |-..+.|.
T Consensus 109 PGr~n~l~~~~~~~G~y~gqCsElCG~gHs~M~~~V~vv 147 (162)
T PTZ00047 109 PGRLHKINTFILREGVFYGQCSEMCGTLHGFMPIVVEAV 147 (162)
T ss_pred CCceEEEEEecCCCeEEEEEcchhcCcCccCceEEEEEe
Confidence 677778889999999999999976644434 44444443
No 97
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=28.39 E-value=87 Score=28.45 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.4
Q ss_pred ccEEEEeCCCEEEEEEEecCC
Q 038598 44 TYKLKVKPGKTYMLRLINTAL 64 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~ 64 (392)
+|.|+++||+++.+|++..+.
T Consensus 77 PPlfrl~p~~~q~lRIi~~~~ 97 (229)
T PRK15195 77 PPLFVSEPKSENTLRIIYAGP 97 (229)
T ss_pred CCeEEECCCCceEEEEEECCC
Confidence 578999999999999999864
No 98
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=28.33 E-value=2.7e+02 Score=24.58 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=22.0
Q ss_pred EEEecCCCeEEEEEEcCCCCCCCceEEEEec
Q 038598 94 ILVIAPGQTTNVLLKTNPNPPNASFFMLARP 124 (392)
Q Consensus 94 ~l~l~pGeRydVlv~~~~~~~~g~y~i~~~~ 124 (392)
.+..-||..-.+-+++++. |.|..++.-
T Consensus 148 k~da~PG~~~~~~~~~~~~---G~y~~~c~e 175 (201)
T TIGR02866 148 KIDAIPGQYNALWFNADEP---GVYYGYCAE 175 (201)
T ss_pred eEEecCCcEEEEEEEeCCC---EEEEEEehh
Confidence 3556689888888888776 899999874
No 99
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=28.28 E-value=54 Score=29.73 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=30.6
Q ss_pred ccceEEeCCCcEEEEEEEeCCceeeEEeecchhhhh-cCcceEEEEe
Q 038598 328 ERNTVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLS-WGLRMAWIVL 373 (392)
Q Consensus 328 ~rDtv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~-~Gm~~~~~v~ 373 (392)
.+|.+ ||....+.|+++.||.|...|--.--.. ..|...+.|.
T Consensus 170 K~Dai---PG~~n~~~~~~~~~G~y~g~CaE~CG~~Ha~M~~~V~v~ 213 (226)
T TIGR01433 170 QIYAM---AGMQTKLHLIANEPGVYDGISANYSGPGFSGMKFKAIAT 213 (226)
T ss_pred eeecC---CCceEEEEEEeCCCEEEEEEchhhcCcCccCCeEEEEEE
Confidence 44544 6888899999999999999997554432 4455555554
No 100
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=28.00 E-value=2.6e+02 Score=22.63 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=40.0
Q ss_pred CEEEEEEEecCCCCeEEEEEcCc-eEEEEEeCCcccc-c-----eEEeEEEecCCCeEEEEEEcCCC
Q 038598 53 KTYMLRLINTALNDELFFSIANH-TLTVVEADAIYVK-P-----FETNILVIAPGQTTNVLLKTNPN 112 (392)
Q Consensus 53 ~~yRlRlINa~~~~~~~l~id~h-~m~VIa~DG~~v~-P-----~~v~~l~l~pGeRydVlv~~~~~ 112 (392)
+.++|.|-|.|...+- |.+. .+.....||..+. + .....+.|.||+..-+.|.....
T Consensus 20 ~~~~l~~tN~s~~~C~---l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~~ 83 (131)
T PF14016_consen 20 RHATLTFTNTSDTPCT---LYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSNV 83 (131)
T ss_pred cEEEEEEEECCCCcEE---eccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEecC
Confidence 3557999999988553 2444 3556688888552 1 13457999999999999998764
No 101
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=26.19 E-value=2e+02 Score=25.96 Aligned_cols=63 Identities=10% Similarity=0.161 Sum_probs=37.2
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccce--EEeEEEecCCCeEEEEEEcC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPF--ETNILVIAPGQTTNVLLKTN 110 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~--~v~~l~l~pGeRydVlv~~~ 110 (392)
+|.++++||+++.+||+..+.. |--|.-.+.-+.+++.+=++. ..+.|.|+.-.|+=+.+.-.
T Consensus 72 PPl~rl~p~~~q~lRI~~~~~~----LP~DrEslf~lnv~~IP~~~~~~~~n~l~iair~rIKLFyRP~ 136 (226)
T PRK15295 72 PPLFRLDAGQKNSIRVIRSGAP----LPADRESMYWLNIKGIPSIDDNASANRVEISINTQIKLIYRPP 136 (226)
T ss_pred CCeEEECCCCceEEEEEECCCC----CCCCceEEEEEEEEEcCCCCCcCccceEEEEeeeeeeEEEchh
Confidence 5789999999999999998642 112233344444444332211 12356777777766666543
No 102
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=25.88 E-value=92 Score=28.77 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.8
Q ss_pred ccEEEEeCCCEEEEEEEecC
Q 038598 44 TYKLKVKPGKTYMLRLINTA 63 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~ 63 (392)
+|.|+++||+++.+||+..+
T Consensus 85 PPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 85 PPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred CCeEEecCCCceEEEEEEcC
Confidence 56799999999999999876
No 103
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=25.19 E-value=50 Score=20.87 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=13.8
Q ss_pred cEEEEeCCCEEEEEEEecC
Q 038598 45 YKLKVKPGKTYMLRLINTA 63 (392)
Q Consensus 45 ~~~~v~~G~~yRlRlINa~ 63 (392)
...-.-.|+.||||+-.++
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 3455667899999986554
No 104
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=24.91 E-value=1.6e+02 Score=26.99 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=35.3
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTN 110 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~ 110 (392)
+|.|+++||+.+.|||+..+.. .|--|..++.-+.+.+.+=++..-+.|.|+...|.=+.+.-.
T Consensus 84 PPlfrl~p~~~q~lRIi~~~~~---~LP~DRESlf~lnv~~IPp~~~~~n~L~iair~riKLFyRP~ 147 (236)
T PRK11385 84 PPLILLKPGTTGTLRLLRTESD---ILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPE 147 (236)
T ss_pred CCeEEECCCCceEEEEEECCCC---CCCCCceEEEEEEEEecCCCcCCCceEEEEEEeeEEEEEccc
Confidence 5789999999999999998631 111122222222222222111112356777777777666543
No 105
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=24.47 E-value=1.2e+02 Score=24.13 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=22.8
Q ss_pred ccEEEEeCCCEEEEEEEecCCC-----CeEEEEEcCc
Q 038598 44 TYKLKVKPGKTYMLRLINTALN-----DELFFSIANH 75 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~-----~~~~l~id~h 75 (392)
++.|.++||++..+||+..+.. ..++|.+...
T Consensus 55 Pp~~~L~pg~~q~vRv~~~~~~~~~~E~~yrl~~~~i 91 (122)
T PF00345_consen 55 PPIFRLEPGESQTVRVYRGSKLPIDRESLYRLSFREI 91 (122)
T ss_dssp SSEEEEETTEEEEEEEEECSGS-SSS-EEEEEEEEEE
T ss_pred CCceEeCCCCcEEEEEEecCCCCCCceEEEEEEEEEE
Confidence 4789999999999999885542 3355555443
No 106
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=24.47 E-value=3.7e+02 Score=23.54 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=47.8
Q ss_pred CccEEEEeCCCEEEEEEEecCCCCeEEEEE-cCce----EEEEEeCCcccc-ceEEeEE----EecCCCeEEEEEEcCCC
Q 038598 43 DTYKLKVKPGKTYMLRLINTALNDELFFSI-ANHT----LTVVEADAIYVK-PFETNIL----VIAPGQTTNVLLKTNPN 112 (392)
Q Consensus 43 ~~~~~~v~~G~~yRlRlINa~~~~~~~l~i-d~h~----m~VIa~DG~~v~-P~~v~~l----~l~pGeRydVlv~~~~~ 112 (392)
..+++-+.+|-++.+-|+|.... ..+|.| ..-+ --.++.||..+- +=....+ -|..||+-+.+.+..+.
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e~~-pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~~ 161 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYESL-PHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTSA 161 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCCCC-CccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCCC
Confidence 35889999999999999999844 333333 2211 224666664431 1111111 24678887777765543
Q ss_pred CCCCceEEEEec
Q 038598 113 PPNASFFMLARP 124 (392)
Q Consensus 113 ~~~g~y~i~~~~ 124 (392)
|.||+.+..
T Consensus 162 ---G~YwlvCgi 170 (195)
T TIGR03094 162 ---GKYWLVCGI 170 (195)
T ss_pred ---eeEEEEccc
Confidence 999999764
No 107
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=24.46 E-value=1.4e+02 Score=23.38 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=31.3
Q ss_pred eEEeCCCcEEEEEEEeCCceeeEEeecchhhhhcCc--ceEEEE
Q 038598 331 TVGVPSGGWVAIRFLADNPGVWFMHCHFDVHLSWGL--RMAWIV 372 (392)
Q Consensus 331 tv~v~~~~~~~ir~~~dnpG~w~~HCHi~~H~~~Gm--~~~~~v 372 (392)
...|.+|+.....|..+-.|.-+|.|++.+ .|+ ...|.|
T Consensus 28 ~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~---~~~~~~~~f~v 68 (110)
T PF05938_consen 28 WHVLKPGQSYSFSFRDNFFGTTLFWCHFRW---PGGKYHHSFDV 68 (110)
T ss_pred CEECCCCCEEEEEEecCcCCceeEEEEEEE---CCccEEEEEEE
Confidence 446888999999998888899999999988 454 555555
No 108
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=24.45 E-value=1.4e+02 Score=26.97 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=37.7
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccce---EEeEEEecCCCeEEEEEEcC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPF---ETNILVIAPGQTTNVLLKTN 110 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~---~v~~l~l~pGeRydVlv~~~ 110 (392)
+|.++++||+++.+||+..+.. |--|.-.+.-+.++..+=++. ..+.|.++...|+=+.+.-.
T Consensus 73 PPl~rl~p~~~q~lRIi~~~~~----lP~DrESlf~lnv~eIP~~~~~~~~~n~l~ia~r~~IKlFyRP~ 138 (228)
T PRK15208 73 PPLFKLDPTKNNVLRIVNITNT----LPQDRESVYWINVKAIPAKSEDAENKNVLQIAVRTRLKLFYRPA 138 (228)
T ss_pred CCeEEECCCCccEEEEEECCCC----CCCCeeEEEEEEEEEcCCCCCCccccceEEEEeeeeeeEEEchh
Confidence 5778999999999999987642 222333444444444442211 12356666666666666543
No 109
>PF06355 Aegerolysin: Aegerolysin; InterPro: IPR009413 This family consists of several bacterial and eukaryotic Aegerolysin-like proteins. Aegerolysin and ostreolysin are expressed during formation of primordia and fruiting bodies, and these haemolysins may play an important role in initial phase of fungal fruiting. The bacterial members of this family are expressed during sporulation []. Ostreolysin was found cytolytic to various erythrocytes and tumour cells []. It forms transmembrane pores 4 nm in diameter. Its activity is inhibited by total membrane lipids, and modulated by lysophosphatides.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0030582 fruiting body development
Probab=24.38 E-value=1.9e+02 Score=23.79 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=40.8
Q ss_pred CEEEEEEEecCCCCeE---EEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCC
Q 038598 53 KTYMLRLINTALNDEL---FFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNP 111 (392)
Q Consensus 53 ~~yRlRlINa~~~~~~---~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~ 111 (392)
+++-++|+|-.....+ +..++..+++--......+.+-.++.+.|.+|+.+.|----.+
T Consensus 2 qwv~i~I~n~~~~~~l~i~Na~L~~GKfy~~~~kd~eis~~~v~~~~i~~~~~~~i~scGr~ 63 (131)
T PF06355_consen 2 QWVSIHIVNNLGSGDLKIKNAQLSWGKFYRDGNKDDEISPDDVNGIVIPPGGSYSICSCGRE 63 (131)
T ss_pred cEEEEEEEeCCCCccEEEEccEeccCccccCCCcCCEeCccccCceEecCCCeEEEEEecCC
Confidence 5777899886554322 3355556676555555566777899999999999988776554
No 110
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=24.37 E-value=2.1e+02 Score=25.85 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=34.9
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccce--EEeEEEecCCCeEEEEEE
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPF--ETNILVIAPGQTTNVLLK 108 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~--~v~~l~l~pGeRydVlv~ 108 (392)
+|.|+++||++..+||+..+.. +--|..++.-+-++..+=.+. .-+.|.|+...|+=+...
T Consensus 76 PPl~rl~p~~~q~lRI~~~~~~----lP~DrEslf~lnv~eIP~~~~~~~~n~l~iavr~riKLfyR 138 (227)
T PRK15299 76 PPLFRLNGGQKNVLRIIRTGGN----LPEDRESLYWLDIKSIPSSNPDNKHNTLMLAVKAEFKLIYR 138 (227)
T ss_pred CCeEEECCCCccEEEEEECCCC----CCCcceEEEEEEeEecCCCCcccccceEEEEEeeeeeEEEc
Confidence 5779999999999999988642 222333444444444442111 112455555555555443
No 111
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.98 E-value=3.6e+02 Score=22.61 Aligned_cols=53 Identities=26% Similarity=0.418 Sum_probs=38.5
Q ss_pred CEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEE-------eEEEecCCCeE-EEEEEc
Q 038598 53 KTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFET-------NILVIAPGQTT-NVLLKT 109 (392)
Q Consensus 53 ~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v-------~~l~l~pGeRy-dVlv~~ 109 (392)
.+|-|=+=|.|... +.++....+|+ +||..+.|..+ +.+.|.|||=- ++.+.-
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~ 130 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNE 130 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEecc
Confidence 36778888888764 55688888887 89998876533 46779999866 555543
No 112
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=23.74 E-value=99 Score=28.39 Aligned_cols=64 Identities=13% Similarity=0.179 Sum_probs=36.4
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccce-----EEeEEEecCCCeEEEEEEcC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPF-----ETNILVIAPGQTTNVLLKTN 110 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~-----~v~~l~l~pGeRydVlv~~~ 110 (392)
+|.|+++||+...|||+..+.. .|--|.-++.-+-++..+-++. .-+.|.|+...|.=+.+.-.
T Consensus 81 PPl~rl~p~~~q~lRIi~~~~~---~lP~DrESlf~lnv~eIP~~~~~~~~~~~n~l~iair~~IKLFyRP~ 149 (246)
T PRK09926 81 PPVSRIDPKRGQTIKLMYTAST---ALPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKLFYRPD 149 (246)
T ss_pred CCeEEECCCCccEEEEEeCCCC---CCCCCceEEEEEEeeecCCCCccccccccceEEEeeeeeEEEEEcCc
Confidence 5678999999999999988751 1222333344444444432211 12246666666666655543
No 113
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=23.65 E-value=3.5e+02 Score=20.90 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=19.2
Q ss_pred CCceEEEcCCcCCCCCCCCCCccEEEEeCCCEEEEEEEecC
Q 038598 23 VSEAYTFNGLPGPTYNCSAKDTYKLKVKPGKTYMLRLINTA 63 (392)
Q Consensus 23 ~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~ 63 (392)
++..-.+||++ ...-.+-|+.|++.++--+
T Consensus 16 ~G~W~Sv~~~P-----------~v~I~r~g~~Y~vti~~~~ 45 (95)
T PF12992_consen 16 CGEWESVNGKP-----------DVTIYRNGGSYKVTITYRS 45 (95)
T ss_pred EEEeEccCCCC-----------CEEEEECCCeEEEEEEEEc
Confidence 45566677763 3444566788888876654
No 114
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=23.40 E-value=1.9e+02 Score=24.66 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=38.2
Q ss_pred EEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCcccc-----ceEEeEEEecCCCe
Q 038598 47 LKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVK-----PFETNILVIAPGQT 102 (392)
Q Consensus 47 ~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~-----P~~v~~l~l~pGeR 102 (392)
..+.+ ++.+|+++|+|....+.+.-++.....+...|.++- ++....+.+.+|.|
T Consensus 67 ~~~d~-~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~l~~gd~ 126 (193)
T PF07228_consen 67 AIIDP-ETGTLTYANAGHPPPLLLRPGGREIEQLESEGPPLGIFEDIDYQEQEIQLEPGDR 126 (193)
T ss_dssp EEEET-TTTEEEEEEESSSEEEEEETTCTEEEEETCSSBBCSSSCTTCEEEEEEE--TTEE
T ss_pred EEecc-cceEEEEeCCCCCCEEEEeccccceeecccCccceeeeccccccceEEEeccccE
Confidence 34455 355899999999988767666678888888888861 34566677777765
No 115
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.73 E-value=1.5e+02 Score=26.94 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=44.3
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEE---eEEEecCCCeEEEEEEcCC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFET---NILVIAPGQTTNVLLKTNP 111 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v---~~l~l~pGeRydVlv~~~~ 111 (392)
+|.|+++||+...+||+..+. .+=-|...+.-+-+++.+-++... +.+.|+.=.|+-+.+.-..
T Consensus 80 PPv~rl~p~~~q~vRi~~~~~----~lP~drEslf~lnv~eIPp~~~~~~~~n~lq~a~r~riKlf~RP~~ 146 (235)
T COG3121 80 PPVFRLEPGQEQQLRILYTGN----KLPADRESLFRLNVDEIPPKSKDDKGPNVLQLALRSRIKLFYRPAG 146 (235)
T ss_pred CCeEEECCCCccEEEEEecCC----CCCCCceeEEEEEeeecCCCCcccCCcceEEEEeeeeeeEEECccc
Confidence 678999999999999999996 233344555555666665433111 4577877788888777654
No 116
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=22.65 E-value=3.6e+02 Score=22.15 Aligned_cols=45 Identities=20% Similarity=0.118 Sum_probs=29.5
Q ss_pred CCCceEEEcCCcCCCCCCCCCCccEEEEeCCC---EEEEEEEecCCCCeEEEEEc
Q 038598 22 NVSEAYTFNGLPGPTYNCSAKDTYKLKVKPGK---TYMLRLINTALNDELFFSIA 73 (392)
Q Consensus 22 ~~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~---~yRlRlINa~~~~~~~l~id 73 (392)
..+..+.+||.+- . ....-.++||| .+|+++.|.-........+.
T Consensus 10 r~G~~i~~dg~~~---~----V~~~~~~KpGKg~a~vrvk~k~l~tG~~~e~~f~ 57 (131)
T COG0231 10 RKGLYIVIDGEPY---V----VVEISHVKPGKGGAFVRVKLKNLFTGKKVEKTFK 57 (131)
T ss_pred cCCCEEEECCeEE---E----EEEEEEccCCCCCcEEEEEEEEccCCCEEEEEEc
Confidence 3577888999751 1 01234677774 67888888877766666664
No 117
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=22.17 E-value=3.4e+02 Score=21.55 Aligned_cols=74 Identities=11% Similarity=0.034 Sum_probs=40.2
Q ss_pred EEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceE----EeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 48 KVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFE----TNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 48 ~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~----v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
.+..|+..++|+-=......-.+.+ .+.|...+|..|--.. ...+....++++.+.++++..-..|.|.|.+.
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~~---~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~ 106 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPVF---GFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVG 106 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEEE---EEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccEE---EEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEE
Confidence 4667777777765444333333333 5677777887662111 12344444999999998876322399999877
Q ss_pred c
Q 038598 124 P 124 (392)
Q Consensus 124 ~ 124 (392)
.
T Consensus 107 l 107 (142)
T PF14524_consen 107 L 107 (142)
T ss_dssp E
T ss_pred E
Confidence 5
No 118
>PRK15254 fimbrial chaperone protein StdC; Provisional
Probab=22.15 E-value=1.9e+02 Score=26.42 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=36.6
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNP 111 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~ 111 (392)
+|.|+++||++..|||+-.+.... .|--|..++.-+-+.+.+=++...+.|.|+...|.=+...-..
T Consensus 68 PPlfrl~p~~~~~lRI~~~~~~~~-~lP~DRESlf~lnv~~IP~~~~~~n~L~iair~~iKLFyRP~~ 134 (239)
T PRK15254 68 PPLQRIDAGQKSQVRITQVRGLTD-KLPQDRETLFWFNVRGVPPKPEDDNVLQLAMQSQLKLFYRPKA 134 (239)
T ss_pred CCeEEECCCCceEEEEEEcccCCC-CCCCCceEEEEEEEEEcCCCCCCCceEEEEEEeEEeEEEcccc
Confidence 578999999999999997621100 1122222222222222221221234677777777777776543
No 119
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.98 E-value=2.8e+02 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.330 Sum_probs=20.2
Q ss_pred ecCCCeEEEEEEcC-CCCCCCceEEEEeccCC
Q 038598 97 IAPGQTTNVLLKTN-PNPPNASFFMLARPYFT 127 (392)
Q Consensus 97 l~pGeRydVlv~~~-~~~~~g~y~i~~~~~~~ 127 (392)
|.||+.+.|.++-- .+..+|.|...+.+...
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p~ 130 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAFPP 130 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEECC
Confidence 67888888888443 33334778777776543
No 120
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=21.54 E-value=4.6e+02 Score=21.47 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=29.2
Q ss_pred CCceEEEcCCcCCCCCCCCCCccEEEEeCCC----EEEEEEEecCCCCeEEEEEc
Q 038598 23 VSEAYTFNGLPGPTYNCSAKDTYKLKVKPGK----TYMLRLINTALNDELFFSIA 73 (392)
Q Consensus 23 ~~d~~liNG~~~~~~~~~~~~~~~~~v~~G~----~yRlRlINa~~~~~~~l~id 73 (392)
.+..+.+||.+ |.+ ...-.++||+ .+|+++.|--....+.-.+.
T Consensus 14 kG~~i~~~g~p---~~V----~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~ 61 (130)
T TIGR00037 14 VGGYVVIDGRP---CKI----VDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSP 61 (130)
T ss_pred CCCEEEECCEE---EEE----EEEEecCCCCCCcEEEEEEEEECCCCCEEEEEEC
Confidence 47889999985 111 1123467886 47888888877777766654
No 121
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=20.98 E-value=1.4e+02 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=16.3
Q ss_pred eEEeEEEecCCCeEEEEEEcC
Q 038598 90 FETNILVIAPGQTTNVLLKTN 110 (392)
Q Consensus 90 ~~v~~l~l~pGeRydVlv~~~ 110 (392)
..+..+.|.+|+++-+.++..
T Consensus 42 ~~~~~l~l~~G~~v~~~ik~~ 62 (69)
T TIGR00638 42 ESVAELGLKPGKEVYAVIKAP 62 (69)
T ss_pred HHHhhCCCCCCCEEEEEEECc
Confidence 345677889999999998864
No 122
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=20.21 E-value=4.2e+02 Score=20.49 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=43.8
Q ss_pred cEEEEeCCCEEEEEEEecCCCCeEEEEEcCc-eEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCCCCCCCceEEEEe
Q 038598 45 YKLKVKPGKTYMLRLINTALNDELFFSIANH-TLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNPNPPNASFFMLAR 123 (392)
Q Consensus 45 ~~~~v~~G~~yRlRlINa~~~~~~~l~id~h-~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~~~~~g~y~i~~~ 123 (392)
-.|...-|.+.-|=++-.|- +.|+-+.. .|+||+-.-...-|=..+......||.++|-- . .+|-|++.
T Consensus 15 ~~~~~~dG~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~Vpa----n---ssF~v~v~ 84 (94)
T PF06865_consen 15 ITFEFADGSKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPA----N---SSFDVKVK 84 (94)
T ss_dssp EEEEETTSEEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-T----T---EEEEEEES
T ss_pred EEEEcCCCCcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECC----C---CeEEEEEC
Confidence 45677777788888887765 77888776 58997654333335556778888898887631 1 56777765
No 123
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=20.16 E-value=3.1e+02 Score=23.41 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=20.6
Q ss_pred EEEEEEecCCCCeEEEEEcCceEEEEEeCC
Q 038598 55 YMLRLINTALNDELFFSIANHTLTVVEADA 84 (392)
Q Consensus 55 yRlRlINa~~~~~~~l~id~h~m~VIa~DG 84 (392)
-+++++|+|..+.+.++-++.....+.-.+
T Consensus 99 ~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~ 128 (193)
T smart00331 99 GTLSYANAGHSPPYLLRADGGLVEDLDDLG 128 (193)
T ss_pred CEEEEEeCCCCceEEEECCCCeEEEcCCCC
Confidence 378999999998887765555555544333
No 124
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=20.09 E-value=2.2e+02 Score=26.01 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=36.0
Q ss_pred ccEEEEeCCCEEEEEEEecCCCCeEEEEEcCceEEEEEeCCccccceEEeEEEecCCCeEEEEEEcCC
Q 038598 44 TYKLKVKPGKTYMLRLINTALNDELFFSIANHTLTVVEADAIYVKPFETNILVIAPGQTTNVLLKTNP 111 (392)
Q Consensus 44 ~~~~~v~~G~~yRlRlINa~~~~~~~l~id~h~m~VIa~DG~~v~P~~v~~l~l~pGeRydVlv~~~~ 111 (392)
+|.|+++||+.+.|||+..+.. |--|..++.-+.+-..+=++...+.|.|+...|.=+...-..
T Consensus 80 PPlfrl~p~~~~~lRI~~~~~~----LP~DRESlf~lnv~~IPp~~~~~n~l~iair~riKlFYRP~~ 143 (234)
T PRK15192 80 PPLFMLSARQENSMRVVYTGAP----LPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEG 143 (234)
T ss_pred CCeEEECCCCceEEEEEECCCC----CCCcceEEEEEEEEecCCCCCCCcEEEEEEEeeeeEEEcccc
Confidence 5789999999999999988742 111222222222222211111234577777777777766443
Done!