BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038599
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 188/361 (52%), Gaps = 42/361 (11%)
Query: 30 PLQSLAVAAVIFGLPAILIRSIASI--------KSLTFNINVLILMAVLIF---CAFS-- 76
P+Q LA V + +P +L+ +I++ L F LI AVL+ CAF
Sbjct: 316 PIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLI--AVLVVACPCAFGLA 373
Query: 77 ----------KAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVS 126
K A G+L+K D LE+ KV V DKTGT+T+G+ VTD + D
Sbjct: 374 TPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDER 433
Query: 127 LGTLLYWVSSIESKSSHPMAAALVDYARSLAIE-PVPENVEDFQNFPGEGIFGKIHGNVI 185
LL + E +S HP+A A+V A IE PE VE GEG+ + I
Sbjct: 434 --ELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVE---VIAGEGVVA----DGI 484
Query: 186 YIGNRRIGPRTGCSKDSIAEAKCTG----GKTRGYVYLGATPVGTFSLSDSCRSGALEAI 241
+GN+R+ G + + E KT V G ++SD+ + A A+
Sbjct: 485 LVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAV 544
Query: 242 KDLKSLGIKSFILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATAMV 301
++LK +GIK ++ GD+ +A +L+ D+V AE+LP K E V+ L+ A V
Sbjct: 545 QELKRMGIKVGMITGDNWRSAEAISRELN--LDLVIAEVLPHQKSEEVKKLQAKEVVAFV 602
Query: 302 GDGINDAPALAAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQN 361
GDGINDAPALA D+GI++G SGS +A+ESG ++L+ +D+R + AI+L+RK +K+ QN
Sbjct: 603 GDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQN 661
Query: 362 V 362
+
Sbjct: 662 I 662
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 188/361 (52%), Gaps = 42/361 (11%)
Query: 30 PLQSLAVAAVIFGLPAILIRSIASI--------KSLTFNINVLILMAVLIF---CAFS-- 76
P+Q LA V + +P +L+ +I++ L F LI AVL+ CAF
Sbjct: 238 PIQRLADKVVAYFIPTVLLVAISAFIYWYFIAHAPLLFAFTTLI--AVLVVACPCAFGLA 295
Query: 77 ----------KAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVS 126
K A G+L+K D LE+ KV V DKTGT+T+G+ VTD + D
Sbjct: 296 TPTALTVGMGKGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDER 355
Query: 127 LGTLLYWVSSIESKSSHPMAAALVDYARSLAIE-PVPENVEDFQNFPGEGIFGKIHGNVI 185
LL + E +S HP+A A+V A IE PE VE GEG+ + I
Sbjct: 356 --ELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVE---VIAGEGVVA----DGI 406
Query: 186 YIGNRRIGPRTGCSKDSIAEAKCTG----GKTRGYVYLGATPVGTFSLSDSCRSGALEAI 241
+GN+R+ G + + E KT V G ++SD+ + A A+
Sbjct: 407 LVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAV 466
Query: 242 KDLKSLGIKSFILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATAMV 301
++LK +GIK ++ GD+ +A +L+ D+V AE+LP K E V+ L+ A V
Sbjct: 467 QELKRMGIKVGMITGDNWRSAEAISRELN--LDLVIAEVLPHQKSEEVKKLQAKEVVAFV 524
Query: 302 GDGINDAPALAAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQN 361
GDGINDAPALA D+GI++G SGS +A+ESG ++L+ +D+R + AI+L+RK +K+ QN
Sbjct: 525 GDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQN 583
Query: 362 V 362
+
Sbjct: 584 I 584
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 155 bits (393), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/287 (37%), Positives = 158/287 (55%), Gaps = 17/287 (5%)
Query: 77 KAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLLYWVSS 136
K A G+L+K D LE+ KV V DKTGT+T+G+ VTD + D LL +
Sbjct: 12 KGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDER--ELLRLAAI 69
Query: 137 IESKSSHPMAAALVDYARSLAIE-PVPENVEDFQNFPGEGIFGKIHGNVIYIGNRRIGPR 195
E +S HP+A A+V A IE PE VE GEG+ + I +GN+R+
Sbjct: 70 AERRSEHPIAEAIVKKALEHGIELGEPEKVE---VIAGEGVVA----DGILVGNKRLMED 122
Query: 196 TGCSKDSIAEAKCTG----GKTRGYVYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKS 251
G + + E KT V G ++SD+ + A A+++LK +GIK
Sbjct: 123 FGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKV 182
Query: 252 FILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATAMVGDGINDAPAL 311
++ GD+ +A +L+ D+V AE+LP K E V+ L+ A VGDGINDAPAL
Sbjct: 183 GMITGDNWRSAEAISRELN--LDLVIAEVLPHQKSEEVKKLQAKEVVAFVGDGINDAPAL 240
Query: 312 AAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKL 358
A D+GI++G SGS +A+ESG ++L+ +D+R + AI+L+RK +K+
Sbjct: 241 AQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 149/262 (56%), Gaps = 7/262 (2%)
Query: 97 VKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLLYWVSSIESKSSHPMAAALVDYARSL 156
++ V DKTGT+T G F VTD + + S LL +S+E++S HP+AAA+V+ A
Sbjct: 13 LQAVIFDKTGTLTEGRFGVTDI--VGFNHSEDELLQIAASLEARSEHPIAAAIVEEAEKR 70
Query: 157 AIEPVPENVEDFQNFPGEGIFGKIHGNVIYIGNRRIGPRTGCSKDSIAEAKCTGGKTRGY 216
VE+F+ PG+G+ G ++G + + G D E GKT +
Sbjct: 71 GFGLT--EVEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIKTDESVEKLKQQGKTVVF 128
Query: 217 VYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHAAALYAQDQLDHAFDMV 276
+ G +L+D R + EAI LK++GIK +L GD+ A + ++L D
Sbjct: 129 ILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEEL--GLDDY 186
Query: 277 YAELLPQHKEELVELLKKDGATAMVGDGINDAPALAAVDIGISMGISGSALAMESGHVIL 336
+AE+LP K E V+ +++ TAMVGDG+NDAPALA D+GI++G +G+ +A+E+ ++L
Sbjct: 187 FAEVLPHEKAEKVKEVQQKYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVL 245
Query: 337 MSNDIRKIPKAIKLARKASTKL 358
+ ND R + ++L+RK +KL
Sbjct: 246 VRNDPRDVAAIVELSRKTYSKL 267
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 7/262 (2%)
Query: 97 VKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLLYWVSSIESKSSHPMAAALVDYARSL 156
++ V DKTGT+T G F VTD + + S LL +S+E++S HP+AAA+V+ A
Sbjct: 13 LQAVIFDKTGTLTEGRFGVTDI--VGFNHSEDELLQIAASLEARSEHPIAAAIVEEAEKR 70
Query: 157 AIEPVPENVEDFQNFPGEGIFGKIHGNVIYIGNRRIGPRTGCSKDSIAEAKCTGGKTRGY 216
VE+F+ PG+G+ G ++G + + G D E GKT +
Sbjct: 71 GFGLT--EVEEFRAIPGKGVEGIVNGRRYMVVSPGYIRELGIKTDESVEKLKQQGKTVVF 128
Query: 217 VYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHAAALYAQDQLDHAFDMV 276
+ G +L+D R + EAI LK++GIK +L GD+ A + ++L D
Sbjct: 129 ILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEEL--GLDDY 186
Query: 277 YAELLPQHKEELVELLKKDGATAMVGDGINDAPALAAVDIGISMGISGSALAMESGHVIL 336
+AE+LP K E V+ +++ TAMVGDG+NDAPALA D+GI++G +G+ +A+E+ ++L
Sbjct: 187 FAEVLPHEKAEKVKEVQQKYVTAMVGDGVNDAPALAQADVGIAIG-AGTDVAVETADIVL 245
Query: 337 MSNDIRKIPKAIKLARKASTKL 358
+ ND R + ++L+RK +K
Sbjct: 246 VRNDPRDVAAIVELSRKTYSKF 267
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 157/287 (54%), Gaps = 17/287 (5%)
Query: 77 KAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLLYWVSS 136
K A G+L+K D LE+ KV V DKTGT+T+G+ VTD + D LL +
Sbjct: 12 KGAELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDER--ELLRLAAI 69
Query: 137 IESKSSHPMAAALVDYARSLAIE-PVPENVEDFQNFPGEGIFGKIHGNVIYIGNRRIGPR 195
E +S P+A A+V A IE PE VE GEG+ + I +GN+R+
Sbjct: 70 AERRSEQPIAEAIVKKALEHGIELGEPEKVE---VIAGEGVVA----DGILVGNKRLMED 122
Query: 196 TGCSKDSIAEAKCTG----GKTRGYVYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKS 251
G + + E KT V G ++SD+ + A A+++LK +GIK
Sbjct: 123 FGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKV 182
Query: 252 FILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATAMVGDGINDAPAL 311
++ GD+ +A +L+ D+V AE+LP K E V+ L+ A VGDGINDAPAL
Sbjct: 183 GMITGDNWRSAEAISRELN--LDLVIAEVLPHQKSEEVKKLQAKEVVAFVGDGINDAPAL 240
Query: 312 AAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKL 358
A D+GI++G SGS +A+ESG ++L+ +D+R + AI+L+RK +K+
Sbjct: 241 AQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 149/277 (53%), Gaps = 17/277 (6%)
Query: 86 KGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLLYWVSSIESKSSHPM 145
K D LE+ KV V DKTGT+T+G+ VTD + D LL + E +S HP+
Sbjct: 1 KNADALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDER--ELLRLAAIAERRSEHPI 58
Query: 146 AAALVDYARSLAIE-PVPENVEDFQNFPGEGIFGKIHGNVIYIGNRRIGPRTGCSKDSIA 204
A A+V A IE PE VE GEG+ + I +GN+R+ G + +
Sbjct: 59 AEAIVKKALEHGIELGEPEKVE---VIAGEGVVA----DGILVGNKRLXEDFGVAVSNEV 111
Query: 205 EAKCTG----GKTRGYVYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHA 260
E KT V G ++SD+ + A A+++LK GIK + GD+
Sbjct: 112 ELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWR 171
Query: 261 AALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATAMVGDGINDAPALAAVDIGISM 320
+A +L+ D+V AE+LP K E V+ L+ A VGDGINDAPALA D+GI++
Sbjct: 172 SAEAISRELN--LDLVIAEVLPHQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAV 229
Query: 321 GISGSALAMESGHVILMSNDIRKIPKAIKLARKASTK 357
G SGS +A+ESG ++L+ +D+R + AI+L+RK +K
Sbjct: 230 G-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTXSK 265
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 154/296 (52%), Gaps = 11/296 (3%)
Query: 71 IFCAFSKAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTL 130
I K A +G+L+K + LE + KV + +DKTGT+T G +T + DD
Sbjct: 394 IMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLTEGHPKLTRI--VTDDFVEDNA 451
Query: 131 LYWVSSIESKSSHPMAAALVDYARSLAIEPVPENVEDFQNFPGEGIFGKIHGNVIYIGNR 190
L +++E +S HP+A A+V A+ + +VE F+ G+G+ G++ G+ + IGN
Sbjct: 452 LALAAALEHQSEHPLANAIVHAAKEKGLSL--GSVEAFEAPTGKGVVGQVDGHHVAIGNA 509
Query: 191 RIGPRTGCSKDSIAE-AKCTGGKTRGYVYLG--ATPVGTFSLSDSCRSGALEAIKDLKSL 247
R+ G + E A GK +++ V + D +S E I +L+
Sbjct: 510 RLMQEHGGDNAPLFEKADELRGKGASVMFMAVDGKTVALLVVEDPIKSSTPETILELQQS 569
Query: 248 GIKSFILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDG-ATAMVGDGIN 306
GI+ +L GDS A L V AE++P+ K +V LK G AM GDG+N
Sbjct: 570 GIEIVMLTGDSKRTAEAVAGTL--GIKKVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVN 627
Query: 307 DAPALAAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQNV 362
DAPALA DIGI+MG +G+ +A+ES V L+ D+R I KA +L+ + + QN+
Sbjct: 628 DAPALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNL 682
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 146/291 (50%), Gaps = 31/291 (10%)
Query: 72 FCAFSKAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLL 131
+ K G+++K + E + ++ + DKTGT+T G VT F I D +SL
Sbjct: 3 LSLYEKMLHKGMIIKNSNVYEKIKEIDTIIFDKTGTLTYGTPIVTQF--IGDSLSLA--- 57
Query: 132 YWVSSIESKSSHPMAAALVDYARSLAIEPVPENVEDFQNFPGEGIFGKIHGNVIYIGNRR 191
+ +S+E+ SSHP+A A+V YA+ ++ + V+DF+ G G+ GKI
Sbjct: 58 -YAASVEALSSHPIAKAIVKYAKEQGVKILE--VKDFKEISGIGVRGKIS---------- 104
Query: 192 IGPRTGCSKDSIAEAKCTGGKTRGYVYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKS 251
D I E K VY+ P+ +F++SD R + ++ LK+ G+K
Sbjct: 105 ---------DKIIEVKKAENNNDIAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKI 155
Query: 252 FILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATA-MVGDGINDAPA 310
IL+GD +L+ Y+ L P+ K ++E LK++G M+GDG+NDA A
Sbjct: 156 IILSGDKEDKVKELSKELN--IQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAA 213
Query: 311 LAAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQN 361
LA D+ ++MG +G ++ +IL+SNDI + IK ++ S + N
Sbjct: 214 LALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIPSN 263
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 146/291 (50%), Gaps = 31/291 (10%)
Query: 72 FCAFSKAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLL 131
+ K G+++K + E + ++ + +KTGT+T G VT F I D +SL
Sbjct: 3 LSLYEKMLHKGMIIKNSNVYEKIKEIDTIIFNKTGTLTYGTPIVTQF--IGDSLSLA--- 57
Query: 132 YWVSSIESKSSHPMAAALVDYARSLAIEPVPENVEDFQNFPGEGIFGKIHGNVIYIGNRR 191
+ +S+E+ SSHP+A A+V YA+ ++ + V+DF+ G G+ GKI
Sbjct: 58 -YAASVEALSSHPIAKAIVKYAKEQGVKILE--VKDFKEISGIGVRGKIS---------- 104
Query: 192 IGPRTGCSKDSIAEAKCTGGKTRGYVYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKS 251
D I E K VY+ P+ +F++SD R + ++ LK+ G+K
Sbjct: 105 ---------DKIIEVKKAENNNDIAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKI 155
Query: 252 FILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATA-MVGDGINDAPA 310
IL+GD +L+ Y+ L P+ K ++E LK++G M+GDG+NDA A
Sbjct: 156 IILSGDKEDKVKELSKELN--IQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAA 213
Query: 311 LAAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQN 361
LA D+ ++MG +G ++ +IL+SNDI + IK ++ S + N
Sbjct: 214 LALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIPSN 263
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 146/291 (50%), Gaps = 31/291 (10%)
Query: 72 FCAFSKAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLL 131
+ K G+++K + E + ++ + +KTGT+T G VT F I D +SL
Sbjct: 3 LSLYEKMLHKGMIIKNSNVYEKIKEIDTIIFEKTGTLTYGTPIVTQF--IGDSLSLA--- 57
Query: 132 YWVSSIESKSSHPMAAALVDYARSLAIEPVPENVEDFQNFPGEGIFGKIHGNVIYIGNRR 191
+ +S+E+ SSHP+A A+V YA+ ++ + V+DF+ G G+ GKI
Sbjct: 58 -YAASVEALSSHPIAKAIVKYAKEQGVKILE--VKDFKEISGIGVRGKIS---------- 104
Query: 192 IGPRTGCSKDSIAEAKCTGGKTRGYVYLGATPVGTFSLSDSCRSGALEAIKDLKSLGIKS 251
D I E K VY+ P+ +F++SD R + ++ LK+ G+K
Sbjct: 105 ---------DKIIEVKKAENNNDIAVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKI 155
Query: 252 FILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLKKDGATA-MVGDGINDAPA 310
IL+GD +L+ Y+ L P+ K ++E LK++G M+GDG+NDA A
Sbjct: 156 IILSGDKEDKVKELSKELN--IQEYYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAA 213
Query: 311 LAAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQN 361
LA D+ ++MG +G ++ +IL+SNDI + IK ++ S + N
Sbjct: 214 LALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIKNRKRLSNAIPSN 263
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query: 234 RSGALEAIKDLKSLGIKSFILAGDSHAAALYAQDQLDHAFDMVYAELLPQHKEELVELLK 293
+ A A+++LK GIK + GD+ +A +L+ D+V AE+LP K E V+ L+
Sbjct: 24 KESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELN--LDLVIAEVLPHQKSEEVKKLQ 81
Query: 294 KDGATAMVGDGINDAPALAAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIK 349
A VGDGINDAPALA D+GI++G SG ++L+ +D+R + AI+
Sbjct: 82 AKEVVAFVGDGINDAPALAQADLGIAVG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 222 TPVGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHAAAL----------YAQDQLDH 271
T VG + D R + +I+ + GI+ ++ GD+ A+ +D D
Sbjct: 591 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEDVADR 650
Query: 272 A-----FDMV--------------YAELLPQHKEELVELLKK-DGATAMVGDGINDAPAL 311
A FD + +A + P HK ++VE L+ D TAM GDG+NDAPAL
Sbjct: 651 AYTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQSFDEITAMTGDGVNDAPAL 710
Query: 312 AAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQ 360
+IGI+MG SG+A+A + ++L ++ I A++ R + Q
Sbjct: 711 KKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 758
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 267 DQLDHAFDMVYAELLPQHKEELVELLKKDGA-TAMVGDGINDAPALAAVDIGISMGISGS 325
D L + ++V+A PQ K +VE ++ GA A+ GDG+ND+PAL DIG++MGISGS
Sbjct: 685 DILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGS 744
Query: 326 ALAMESGHVILMSNDIRKIPKAIKLAR 352
++ ++ +IL+ ++ I ++ R
Sbjct: 745 DVSKQAADMILLDDNFASIVTGVEEGR 771
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 47 LIRSIASIKSLTFNINVLI------LMAVLIFC---AFSKAATTGLLVKGGDYLEILAKV 97
LI + ++++ F I +++ L+A + C + A LVK + +E L
Sbjct: 316 LILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGST 375
Query: 98 KMVALDKTGTVTRGEFTV 115
+ DKTGT+T+ TV
Sbjct: 376 STICSDKTGTLTQNRMTV 393
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 222 TPVGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHAAAL----------YAQDQLDH 271
T VG + D R + +I+ + GI+ ++ GD+ A+ ++ D
Sbjct: 592 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 651
Query: 272 A-----FDMV--------------YAELLPQHKEELVELLKK-DGATAMVGDGINDAPAL 311
A FD + +A + P HK ++VE L+ D TAM GDG+NDAPAL
Sbjct: 652 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPAL 711
Query: 312 AAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQ 360
+IGI+MG SG+A+A + ++L ++ I A++ R + Q
Sbjct: 712 KKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 222 TPVGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHAAAL----------YAQDQLDH 271
T VG + D R + +I+ + GI+ ++ GD+ A+ ++ D
Sbjct: 593 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 652
Query: 272 A-----FDMV--------------YAELLPQHKEELVELLKK-DGATAMVGDGINDAPAL 311
A FD + +A + P HK ++VE L+ D TAM GDG+NDAPAL
Sbjct: 653 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPAL 712
Query: 312 AAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQ 360
+IGI+MG SG+A+A + ++L ++ I A++ R + Q
Sbjct: 713 KKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 760
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 222 TPVGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHAAAL----------YAQDQLDH 271
T VG + D R + +I+ + GI+ ++ GD+ A+ ++ D
Sbjct: 592 TFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR 651
Query: 272 A-----FDMV--------------YAELLPQHKEELVELLKK-DGATAMVGDGINDAPAL 311
A FD + +A + P HK ++VE L+ D TAM GDG+NDAPAL
Sbjct: 652 AYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPAL 711
Query: 312 AAVDIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQ 360
+IGI+MG SG+A+A + ++L ++ I A++ R + Q
Sbjct: 712 KKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQ 759
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 130/324 (40%), Gaps = 67/324 (20%)
Query: 91 LEILAKVKMVALDKTGTVTRGEFTVTDFQSICDDVSLGTLLYWVSSIESKSSHPMAAALV 150
+E LA V+++ DKTGT+T+ + ++ D ++ V L+ S+ + A
Sbjct: 366 IESLAGVEILCSDKTGTLTKNKLSLHDPYTVAG-VDPEDLMLTACLAASRKKKGIDAIDK 424
Query: 151 DYARSLAIEPVPENV----EDFQNFPGEGIFGKIHGNVIYIGNRRIGPRTGCSK------ 200
+ +SL P ++V + Q P F + V+ + G R C K
Sbjct: 425 AFLKSLKYYPRAKSVLSKYKVLQFHP----FDPVSKKVVAVVESPQGERITCVKGAPLFV 480
Query: 201 --------------DSIAEAKCTGGKTRGYVYLGATP---------VGTFSLSDSCRSGA 237
D + K TRG+ LG +G D R
Sbjct: 481 LKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRGEGSWEILGIMPCMDPPRHDT 540
Query: 238 LEAIKDLKSLGIKSFILAGDSHAAALYAQDQL----------------------DHAFDM 275
+ + + K+LG+ +L GD+ A QL +D
Sbjct: 541 YKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDF 600
Query: 276 V-----YAELLPQHKEELVELLKKDGA-TAMVGDGINDAPALAAVDIGISMGISGSALAM 329
V +AE+ PQHK +VE+L++ G AM GDG+NDAP+L D GI++ S A A
Sbjct: 601 VEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDA-AR 659
Query: 330 ESGHVILMSNDIRKIPKAIKLARK 353
+ ++ ++ + I A+K +R+
Sbjct: 660 SAADIVFLAPGLGAIIDALKTSRQ 683
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 274 DMVYAELLPQHKEELVELLKKDGA-TAMVGDGINDAPALAAVDIGISMGISGSALAMESG 332
+MV+A PQ K +VE ++ GA A+ GDG+ND+PAL DIG++MGI+GS A +
Sbjct: 697 EMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAA 756
Query: 333 HVILMSNDIRKIPKAIKLAR 352
+IL+ ++ I ++ R
Sbjct: 757 DMILLDDNFASIVTGVEQGR 776
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 27 IYHPLQSLAVAAVIFGLPAILIR---SIASIKSLTFNINVLI------LMAVLIFC---A 74
I H + +A A++FG ++ ++++ F + +++ L+A + C
Sbjct: 298 IEHFVDIIAGLAILFGATFFIVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLT 357
Query: 75 FSKAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVT 116
+ A+ +VK + +E L ++ DKTGT+T+ TV+
Sbjct: 358 AKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVS 399
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 267 DQLDHAFDMVYAELLPQHKEELVELLKKDGA-TAMVGDGINDAPALAAVDIGISMGISGS 325
D L + ++V+A PQ K +VE ++ GA A+ GDG+ND+PA DIG++MGI+GS
Sbjct: 649 DILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGS 708
Query: 326 ALAMESGHVILMSNDIRKIPKAIKLAR 352
++ ++ +IL+ ++ I ++ R
Sbjct: 709 DVSKQAADMILLDDNFASIVTGVEEGR 735
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 267 DQLDHAFDMVYAELLPQHKEELVELLKKDGA-TAMVGDGINDAPALAAVDIGISMGISGS 325
D L + ++V+A PQ K +VE ++ GA A+ GDG+ND+PA DIG++MGI+GS
Sbjct: 655 DILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGS 714
Query: 326 ALAMESGHVILMSNDIRKIPKAIKLAR 352
++ ++ +IL+ ++ I ++ R
Sbjct: 715 DVSKQAADMILLDDNFASIVTGVEEGR 741
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 27 IYHPLQSLAVAAVIFGLPAI---LIRSIASIKSLTFNINVLI------LMAVLIFC---A 74
I H + + AV G+ LI ++++ F I +++ L+A + C
Sbjct: 263 IEHFIHIITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLT 322
Query: 75 FSKAATTGLLVKGGDYLEILAKVKMVALDKTGTVTRGEFTVTDFQS 120
+ A LVK + +E L + DKTGT+T+ TV S
Sbjct: 323 AKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWS 368
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 31/170 (18%)
Query: 224 VGTFSLSDSCRSGALEAIKDLKSLGIKSFILAGDSHAAALYAQDQLDHAFDMV------- 276
VG L D R + E I+ +LG+ ++ GD A +L +M
Sbjct: 480 VGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLG 539
Query: 277 ---------------------YAELLPQHKEELVE-LLKKDGATAMVGDGINDAPALAAV 314
+A + P+HK E+V+ L ++ M GDG+NDAPAL
Sbjct: 540 THKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKA 599
Query: 315 DIGISMGISGSALAMESGHVILMSNDIRKIPKAIKLARKASTKLIQNVTL 364
DIGI++ + A A + ++L + I A+ L +A + ++N T+
Sbjct: 600 DIGIAVADATDA-ARGASDIVLTEPGLSVIISAV-LTSRAIFQRMKNYTI 647
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 92 EILAKVKMVALDKTGTVTRGEFTVTDFQSICDDV 125
EI+ KV+ V D +FTV D Q I DD+
Sbjct: 38 EIMQKVRQVQADYMTATREVDFTVPDVQQILDDI 71
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 214 RGYVYLGATPVGTFSLSD-SCRSGALEAIKDLKSLGIKSFILAGDSHAAALYAQDQLDHA 272
RG++ G T +GT + RSG L+A K++ +GI + I+ G +L D+
Sbjct: 241 RGWLVEGGTNIGTARCKEFRERSGRLKACKNMIDMGIDALIVCGGD--GSLTGADRFRSE 298
Query: 273 FDMVYAELL 281
+ + ELL
Sbjct: 299 WPSLIEELL 307
>pdb|2VOY|J Chain J, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 118
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 10/83 (12%)
Query: 111 GEFTVTDFQSICDDVSLGTLLYWVSSIESKSSHPMAAALVDYARSLAIE-PVPENVEDFQ 169
G+ VTD + D LL + E +S HP+A A+V A IE PE VE
Sbjct: 1 GKPEVTDLVPLNGDER--ELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVE--- 55
Query: 170 NFPGEGIFGKIHGNVIYIGNRRI 192
GEG+ + I +GN+R+
Sbjct: 56 VIAGEGVV----ADGILVGNKRL 74
>pdb|4EZE|A Chain A, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
pdb|4EZE|B Chain B, Crystal Structure Of Had Family Hydrolase T0658 From
Salmonella Enterica Subsp. Enterica Serovar Typhi
(Target Efi-501419)
Length = 317
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 236 GALEAIKDLKSLGIKSFILAG--DSHAAALYAQDQLDHAF-------DMVYAE--LLP-- 282
G L + +K+ G K+ I++G D L A+ QLD+AF D V + LP
Sbjct: 183 GLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIM 242
Query: 283 ---QHKEELVELLKK-DGATAMV---GDGINDAPALAAVDIGIS 319
K+ LV+L + + AT + GDG ND P L GI+
Sbjct: 243 NAANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIA 286
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 236 GALEAIKDLKSLGIKSFILAGDSHAAALYAQDQLDH-------------AFDMVYAELLP 282
GALE + +KS G+ ++ G + L D+L+H AFD+ Y + P
Sbjct: 112 GALEVLTKIKSEGLTPXVVTGSGQTSLL---DRLNHNFPGIFQANLXVTAFDVKYGKPNP 168
Query: 283 QHKEELVELLKKDGATAMVGDGINDAPALAAVDIGISMGI 322
E + LKK G I +AP V G++ GI
Sbjct: 169 ---EPYLXALKKGGFKPNEALVIENAP--LGVQAGVAAGI 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,658,789
Number of Sequences: 62578
Number of extensions: 435861
Number of successful extensions: 1220
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 55
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)