BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038600
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/661 (63%), Positives = 507/661 (76%), Gaps = 27/661 (4%)
Query: 1 MQWIKALLTAALLHYIHKDFHEAAARMTLIDCFLFLIVHSIDKLGIWPRLPVFVGLFYLG 60
M+ I +L+++ LL +IHKDFHE ARM+L+D FL LIVH +DK+ W +LPVF+GL YL
Sbjct: 13 MKVITSLISSILLKFIHKDFHEIYARMSLLDRFLLLIVHGVDKMVPWHKLPVFLGLTYLE 72
Query: 61 IRQHLHQEYNLFNVGISPVGVRFNPADYPYRRADGKYNDPFNYTRNKFNSTFNIGKTQXX 120
+R+HLHQ+YNL NVG +P G+RF+PA+YPYR ADGK+NDPFN NS F +
Sbjct: 73 VRRHLHQQYNLLNVGQTPTGIRFDPANYPYRTADGKFNDPFNEGVGSQNSFFG----RNC 128
Query: 121 XXXXAGNVLMKPDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVE 180
+ L +PDPMVVATKLL R+ + DTGKQFNMIAASWIQFMIHDW+DHLEDT+Q+E
Sbjct: 129 PPVDQKSKLRRPDPMVVATKLLGRKKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTHQIE 188
Query: 181 LIAPNEVADKCPLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVR 240
L+AP EVA KCPLSSF+F KTKEVPTGF+E+KTG+ N RTPWWD S +YGS L +VR
Sbjct: 189 LVAPKEVASKCPLSSFRFLKTKEVPTGFFEIKTGSQNIRTPWWDSSVIYGSNSKTLDRVR 248
Query: 241 TFKDGKLKISED-GLLLHDQDGIAVTGDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPH 299
T+KDGKLKISE+ GLLLHD+DG+A++GD+RNSWAGVS L+ALFIKEHN+VC+A+K+E+
Sbjct: 249 TYKDGKLKISEETGLLLHDEDGLAISGDIRNSWAGVSALQALFIKEHNAVCDALKDEDDD 308
Query: 300 LSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVG 359
L DE+LYR+ RLVTSAV+AK+HTIDWTV+LLKTDTL AGM ANWYGLLGKKFKD+FGH G
Sbjct: 309 LEDEDLYRYARLVTSAVVAKIHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAG 368
Query: 360 GAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEK 419
+ILGG VGMK+P+ HGVPYSLTE+F VYRMHSLLPDQLH+ D+ PG NKS L ++
Sbjct: 369 SSILGGVVGMKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQE 428
Query: 420 VDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEGKERPDP 479
+ M +LIG KGE T+S IGFT+ MVSMGHQA GAL L NYP WLR+ V D G+ RPD
Sbjct: 429 ISMRDLIGRKGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDH 488
Query: 480 VDLAALEVYRDRERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDL 539
VDLAALE+YRDRER RYN+ RR++ +IPI+KWEDLT+D+EAI+ L +V+ DVE+LDL
Sbjct: 489 VDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDL 548
Query: 540 LVGLMAEKKIKGXXXXXXXXXXXXHRSPIFSHLFKNTQFLIFVAELHSKL---YYFALVY 596
LVGLMAEKKIKG T F IF+ +L +F +
Sbjct: 549 LVGLMAEKKIKGFA-------------------ISETAFYIFLIMATRRLEADRFFTSDF 589
Query: 597 FRLQTTKKGLEWVKKTESLKDVLDRHYPEITKKWMNSASAFSVWDSPRKAYNPIPLYLRV 656
TKKGLEWV TESLKDV+DRHYP++T KWMNS SAFSVWDSP NPIPLYLR+
Sbjct: 590 NETIYTKKGLEWVNTTESLKDVIDRHYPDMTDKWMNSESAFSVWDSPPLTKNPIPLYLRI 649
Query: 657 P 657
P
Sbjct: 650 P 650
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 98/437 (22%), Positives = 158/437 (36%), Gaps = 118/437 (27%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD V K+L RR + + NM+ A + Q H
Sbjct: 141 PDSKEVLEKVLLRREFIPDPQGSNMMFAFFAQHFTH------------------------ 176
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRT--PWWDGSALYGSTMARLQKVRTFKDGKLKI 249
+FFKT + K G TR D + +YG T+ R K+R FKDGKLK
Sbjct: 177 -----QFFKT--------DHKRGPGFTRGLGHGVDLNHIYGETLDRQHKLRLFKDGKLKY 223
Query: 250 SEDGLLLH------------------DQDGIAVTGDVRNSWAGVSLLEALFIKEHNSVCE 291
G ++ + AV +V G+ + ++++EHN VC+
Sbjct: 224 QVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVGQEVFGLVPGLMMYATIWLREHNRVCD 283
Query: 292 AIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKF 351
+K+E+P DE+L++ RL+ K+ D+ L +G H F
Sbjct: 284 ILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHL-------SGYHFKLKFDPELLF 336
Query: 352 KDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPN 411
F + + EF +Y H LLPD ++ D
Sbjct: 337 NQQFQYQN--------------------RIASEFNTLYHWHPLLPDTFNIED-------- 368
Query: 412 KSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDM 471
++ L L E G T+ + S Q G +
Sbjct: 369 ------QEYSFKQF--LYNNSILLEHGLTQFVESFTRQIAGRVA---------------- 404
Query: 472 EGKERPDPVD-LAALEVYRDRERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVH 530
G+ P V +A + + RE K+ N+ R+ L P + +E+LT +KE L ++
Sbjct: 405 GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKRFSLKPYTSFEELTGEKEMAAELKALY 464
Query: 531 GDDVEKLDLLVGLMAEK 547
D++ ++L L+ EK
Sbjct: 465 -SDIDVMELYPALLVEK 480
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 198 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 257
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 258 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 317
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 318 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 350
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 351 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 394
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 395 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 438
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 439 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 203 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 262
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 263 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 322
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 323 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 355
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 356 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 399
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 400 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 443
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 444 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 485
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 198 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 257
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 258 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 317
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 318 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 350
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 351 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 394
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 395 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 438
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 439 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 202 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 261
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 262 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 321
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 322 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 354
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 355 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 398
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 399 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 442
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 443 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 484
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 203 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 262
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 263 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 322
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 323 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 355
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 356 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 399
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 400 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 443
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 444 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 485
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 204 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 263
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 264 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 323
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 324 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 356
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 357 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 400
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 401 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 444
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 445 FSLKPYTSFEELTGEKEMAAELKALYS-DIDVMELYPALLVEK 486
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 202 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 261
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 262 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 321
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 322 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 354
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 355 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 398
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 399 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 442
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 443 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 484
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 215 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 274
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 275 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 334
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 335 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 367
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 368 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 411
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 412 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 455
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 456 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 497
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 131/343 (38%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 221 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 280
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EHN VC+ +K+E+P DE+L++ RL+ K+ D+
Sbjct: 281 QEVFGLVPGLMMYATIWLREHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDY 340
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 341 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 373
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 374 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 417
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 418 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 461
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 462 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 503
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 96/441 (21%), Positives = 166/441 (37%), Gaps = 126/441 (28%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 172 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 207
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 208 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 256
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 257 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 316
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ L+G+ K
Sbjct: 317 KAEHPTWGDEQLFQTARLI---------------------------------LIGETIKI 343
Query: 354 TFGHVGGAILGGFVGMK-RPE-IHGVPYS----LTEEFVDVYRMHSLLPDQLHLRDLTVP 407
+ G F+ +K PE + G + + EF +Y H L+PD +
Sbjct: 344 VIEEYAQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHFHPLMPDSFRV------ 397
Query: 408 PGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHV 467
GP + + L+ E + F+RQ G G R + +H+
Sbjct: 398 -GPQDYSYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHI 444
Query: 468 VQDMEGKERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQAL 526
+ A++V ++ R + +N+ R+ + P + +++LT +KE L
Sbjct: 445 LH-------------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAEL 491
Query: 527 GEVHGDDVEKLDLLVGLMAEK 547
E++G D++ L+ GL+ EK
Sbjct: 492 EELYG-DIDALEFYPGLLLEK 511
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 141 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 176
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 177 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 225
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 226 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 285
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 286 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 342
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 343 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 371
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 372 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 415
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 416 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 465
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 466 DIDALEFYPGLLLEK 480
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 140 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 175
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 176 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 224
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 225 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 284
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 285 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 341
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 342 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 370
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 371 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 414
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 415 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 464
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 465 DIDALEFYPGLLLEK 479
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 140 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 175
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 176 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 224
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 225 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 284
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 285 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 341
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 342 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 370
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 371 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 414
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 415 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 464
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 465 DIDALEFYPGLLLEK 479
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 141 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 176
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 177 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 225
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 226 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 285
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 286 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 342
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 343 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 371
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 372 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 415
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 416 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 465
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 466 DIDALEFYPGLLLEK 480
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 141 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 176
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 177 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 225
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 226 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 285
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 286 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 342
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 343 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 371
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 372 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 415
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 416 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 465
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 466 DIDALEFYPGLLLEK 480
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 148 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 183
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 184 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 232
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 233 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 292
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 293 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 349
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 350 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 378
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 379 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 422
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 423 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 472
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 473 DIDALEFYPGLLLEK 487
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 152 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 187
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 188 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 236
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 237 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 296
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 297 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 353
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 354 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 382
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 383 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 426
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 427 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 476
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 477 DIDALEFYPGLLLEK 491
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 172 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 207
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 208 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 256
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 257 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 316
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 317 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 373
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 374 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 402
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 403 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 446
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 447 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 496
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 497 DIDALEFYPGLLLEK 511
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 95/435 (21%), Positives = 163/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 148 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 183
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 184 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 232
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EHN VC+ +
Sbjct: 233 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLL 292
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ RL+ K+ I+ V+ L L L G +F+
Sbjct: 293 KAEHPTWGDEQLFQTARLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 349
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 350 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 378
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 379 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 422
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 423 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 472
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 473 DIDALEFYPGLLLEK 487
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 130/343 (37%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 198 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 257
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EH VC+ +K+E+P DE+L++ +L+ K+ D+
Sbjct: 258 QEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDY 317
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 318 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 350
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 351 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 394
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 395 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 438
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 439 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 130/343 (37%), Gaps = 79/343 (23%)
Query: 224 DGSALYGSTMARLQKVRTFKDGKLKISEDGLLLH------------------DQDGIAVT 265
D + +YG T+ R K+R FKDGKLK G ++ + AV
Sbjct: 198 DLNHIYGETLDRQHKLRLFKDGKLKYQVIGGEVYPPTVKDTQVEMIYPPHIPENLQFAVG 257
Query: 266 GDVRNSWAGVSLLEALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
+V G+ + ++++EH VC+ +K+E+P DE+L++ +L+ K+ D+
Sbjct: 258 QEVFGLVPGLMMYATIWLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDY 317
Query: 326 TVELLKTDTLDAGMHANWYGLLGKKFKDTFGHVGGAILGGFVGMKRPEIHGVPYSLTEEF 385
L +G H F F + + EF
Sbjct: 318 VQHL-------SGYHFKLKFDPELLFNQQFQYQN--------------------RIASEF 350
Query: 386 VDVYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVDMANLIGLKGERTLSEIGFTRQMVS 445
+Y H LLPD ++ D ++ L L E G T+ + S
Sbjct: 351 NTLYHWHPLLPDTFNIED--------------QEYSFKQF--LYNNSILLEHGLTQFVES 394
Query: 446 MGHQACGALVLWNYPRWLRNHVVQDMEGKERPDPVD-LAALEVYRDRERKFARYNQLRRA 504
Q G + G+ P V +A + + RE K+ N+ R+
Sbjct: 395 FTRQIAGRVA----------------GGRNVPIAVQAVAKASIDQSREMKYQSLNEYRKR 438
Query: 505 LLLIPISKWEDLTDDKEAIQALGEVHGDDVEKLDLLVGLMAEK 547
L P + +E+LT +KE L ++ D++ ++L L+ EK
Sbjct: 439 FSLKPYTSFEELTGEKEMAAELKALY-SDIDVMELYPALLVEK 480
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 93/435 (21%), Positives = 162/435 (37%), Gaps = 114/435 (26%)
Query: 132 PDPMVVATKLLARRNYKDTGKQFNMIAASWIQFMIHDWVDHLEDTNQVELIAPNEVADKC 191
PD ++ + L RR + + N++ A + Q H
Sbjct: 140 PDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTH------------------------ 175
Query: 192 PLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLK--- 248
+FFKT +M G D +YG + R ++R FKDGKLK
Sbjct: 176 -----QFFKTSG------KMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQM 224
Query: 249 ---------ISEDGLLLHDQDGI------AVTGDVRNSWAGVSLLEALFIKEHNSVCEAI 293
+ E +L+H GI AV +V G+ L ++++EH VC+ +
Sbjct: 225 LNGEVYPPSVEEAPVLMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHQRVCDLL 284
Query: 294 KEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTDTLDAGMHANWYGLLGKKFKD 353
K E+P DE+L++ +L+ K+ I+ V+ L L L G +F+
Sbjct: 285 KAEHPTWGDEQLFQTAKLILIGETIKI-VIEEYVQQLSGYFLQLKFDPEL--LFGAQFQY 341
Query: 354 TFGHVGGAILGGFVGMKRPEIHGVPYSLTEEFVDVYRMHSLLPDQLHLRDLTVPPGPNKS 413
+ EF +Y H L+PD + GP
Sbjct: 342 R------------------------NRIAMEFNQLYHWHPLMPDSFRV-------GPQDY 370
Query: 414 PRLAEKVDMANLIGLKGERTLSEIGFTRQMVSMGHQACGALVLWNYPRWLRNHVVQDMEG 473
+ + L+ E + F+RQ G G R + +H++
Sbjct: 371 SYEQFLFNTSMLVDYGVEALVD--AFSRQ--PAGRIGGG--------RNIDHHILH---- 414
Query: 474 KERPDPVDLAALEVYRD-RERKFARYNQLRRALLLIPISKWEDLTDDKEAIQALGEVHGD 532
A++V ++ R + +N+ R+ + P + +++LT +KE L E++G
Sbjct: 415 ---------VAVDVIKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYG- 464
Query: 533 DVEKLDLLVGLMAEK 547
D++ L+ GL+ EK
Sbjct: 465 DIDALEFYPGLLLEK 479
>pdb|3F9P|C Chain C, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3F9P|D Chain D, Crystal Structure Of Myeloperoxidase From Human Leukocytes
pdb|3ZS0|C Chain C, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS0|D Chain D, Human Myeloperoxidase Inactivated By Tx2
pdb|3ZS1|C Chain C, Human Myeloperoxidase Inactivated By Tx5
pdb|3ZS1|D Chain D, Human Myeloperoxidase Inactivated By Tx5
Length = 467
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 182 IAPNEVADKCPLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRT 241
I PN+ K FF++ G IN T + D S +YGS + +R
Sbjct: 18 IPPNDPRIKNQADCIPFFRSXPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRN 77
Query: 242 FKD--GKLKISE-----------------DGLLLHDQDG---IAVTGDVRNS-WAGVSLL 278
+ G L +++ D LL ++ + GD R+S ++ +
Sbjct: 78 MSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSM 137
Query: 279 EALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
L ++EHN + +K NP E LY+ R + A++ + D+
Sbjct: 138 HTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDY 184
>pdb|1CXP|C Chain C, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1CXP|D Chain D, Cryogenic Crystal Structure Of Human Myeloperoxidase
Isoform C
pdb|1D2V|C Chain C, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D2V|D Chain D, Crystal Structure Of Bromide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D7W|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D7W|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Complexed With Cyanide And Bromide At Ph 4.0
pdb|1D5L|C Chain C, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1D5L|D Chain D, Crystal Structure Of Cyanide-Bound Human Myeloperoxidase
Isoform C At Ph 5.5
pdb|1DNU|C Chain C, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNU|D Chain D, Structural Analyses Of Human Myeloperoxidase-Thiocyanate
Complex
pdb|1DNW|C Chain C, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|1DNW|D Chain D, Human Myeloperoxidase-Cyanide-Thiocyanate Complex
pdb|4DL1|C Chain C, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|D Chain D, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|G Chain G, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|H Chain H, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|K Chain K, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|L Chain L, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|O Chain O, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
pdb|4DL1|P Chain P, Crystal Structure Of Human Myeloperoxidase With Covalent
Thioxanthine Analog
Length = 466
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 182 IAPNEVADKCPLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRT 241
I PN+ K FF++ G IN T + D S +YGS + +R
Sbjct: 18 IPPNDPRIKNQADCIPFFRSXPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRN 77
Query: 242 FKD--GKLKISE-----------------DGLLLHDQDG---IAVTGDVRNS-WAGVSLL 278
+ G L +++ D LL ++ + GD R+S ++ +
Sbjct: 78 MSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSM 137
Query: 279 EALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
L ++EHN + +K NP E LY+ R + A++ + D+
Sbjct: 138 HTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDY 184
>pdb|1MYP|C Chain C, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MYP|D Chain D, X-Ray Crystal Structure Of Canine Myeloperoxidase At 3
Angstroms Resolution
pdb|1MHL|C Chain C, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
pdb|1MHL|D Chain D, Crystal Structure Of Human Myeloperoxidase Isoform C
Crystallized In Space Group P2(1) At Ph 5.5 And 20 Deg C
Length = 466
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 182 IAPNEVADKCPLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSALYGSTMARLQKVRT 241
I PN+ K FF++ G IN T + D S +YGS + +R
Sbjct: 18 IPPNDPRIKNQADCIPFFRSCPACPGSNITIRNQINALTSFVDASMVYGSEEPLARNLRN 77
Query: 242 FKD--GKLKISE-----------------DGLLLHDQDG---IAVTGDVRNS-WAGVSLL 278
+ G L +++ D LL ++ + GD R+S ++ +
Sbjct: 78 MSNQLGLLAVNQRFQDNGRALLPFDNLHDDPCLLTNRSARIPCFLAGDTRSSEMPELTSM 137
Query: 279 EALFIKEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDW 325
L ++EHN + +K NP E LY+ R + A++ + D+
Sbjct: 138 HTLLLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQIITYRDY 184
>pdb|2IKC|A Chain A, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
pdb|2IKC|B Chain B, Crystal Structure Of Sheep Lactoperoxidase At 3.25 A
Resolution Reveals The Binding Sites For Formate
Length = 595
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 198 FFKTKEV-PTGFYE-MKTGTINTRTPWWDGSALYGSTMARLQKVRTFKD--GKLKISEDG 253
FF+ V PT Y+ + IN+ T + D S +YGS + ++R G + ++++
Sbjct: 160 FFRAGFVCPTPPYQSLARDQINSVTSFLDASLVYGSEPSLASRLRNLSSPLGLMAVNQEA 219
Query: 254 ------------LLLHDQDGIAVTGDVRNSWAG---------VSLLEALFIKEHNSVCEA 292
+ + I T V AG ++ + L ++EHN +
Sbjct: 220 WDHGLAYPPFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARE 279
Query: 293 IKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
+K NPH E+LY+ R + A I + D+ +L ++
Sbjct: 280 LKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|3R5Q|A Chain A, Crystal Structure Of Sheep Lactoperoxidase In Complex With
Tetrahydrofuran At 2.7 A Resolution
Length = 595
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 25/161 (15%)
Query: 198 FFKTKEV-PTGFYE-MKTGTINTRTPWWDGSALYGSTMARLQKVRTFKD--GKLKISEDG 253
FF+ V PT Y+ + IN+ T + D S +YGS ++R G + ++++
Sbjct: 160 FFRAGFVCPTPPYQSLARDQINSVTSFLDASLVYGSEPXLASRLRNLSSPLGLMAVNQEA 219
Query: 254 ------------LLLHDQDGIAVTGDVRNSWAG---------VSLLEALFIKEHNSVCEA 292
+ + I T V AG ++ + L ++EHN +
Sbjct: 220 WDHGLAYPPFNNMKPSPCEFINTTARVPCFQAGDSRASEQILLATVHTLLLREHNRLARE 279
Query: 293 IKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
+K NPH E+LY+ R + A I + D+ +L ++
Sbjct: 280 LKRLNPHWDGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|2E9E|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2E9E|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Nitrate At 3.25 A Resolution
pdb|2OJV|A Chain A, Crystal Structure Of A Ternary Complex Of Goat
Lactoperoxidase With Cyanide And Iodide Ions At 2.4 A
Resolution
pdb|2EFB|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EFB|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Phosphate At 2.94 A Resolution
pdb|2EHA|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
pdb|2EHA|B Chain B, Crystal Structure Of Goat Lactoperoxidase Complexed With
Formate Anion At 3.3 A Resolution
Length = 595
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 37/167 (22%)
Query: 198 FFKTKEV-PTGFYE-MKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLKISEDGLL 255
FF+ V PT Y+ + IN T + D S +YGS + ++R S GL+
Sbjct: 160 FFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPSLASRLRNLS------SPLGLM 213
Query: 256 LHDQDG--------------------IAVTGDVRNSWAG---------VSLLEALFIKEH 286
+Q+ I T V AG ++ + L ++EH
Sbjct: 214 AVNQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREH 273
Query: 287 NSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
N + +K NPH E LY+ R + A I + D+ +L ++
Sbjct: 274 NRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|2R5L|A Chain A, Crystal Structure Of Lactoperoxidase At 2.4a Resolution
pdb|3N8F|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3N8F|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Thiocyanate At 3.2 A Resolution
pdb|3NIU|A Chain A, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NIU|B Chain B, Crystal Structure Of The Complex Of Dimeric Goat
Lactoperoxidase With Diethylene Glycol At 2.9 A
Resolution
pdb|3NAK|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3NAK|B Chain B, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Hypothiocyanite At 3.3 A Resolution
pdb|3QF1|A Chain A, Crystal Structure Of The Complex Of Caprine
Lactoperoxidase With Diethylenediamine At 2.6a
Resolution
pdb|3RKE|A Chain A, Crystal Structure Of Goat Lactoperoxidase Complexed With A
Tightly Bound Inhibitor, 4-Aminophenyl-4h-Imidazole-1-Yl
Methanone At 2.3 A Resolution
pdb|3R55|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Pyrazinamide At 2.1 A Resolution
pdb|3SXV|A Chain A, Crystal Structure Of The Complex Of Goat Lactoperoxidase
With Amitrole At 2.1 A Resolution
Length = 595
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 37/167 (22%)
Query: 198 FFKTKEV-PTGFYE-MKTGTINTRTPWWDGSALYGSTMARLQKVRTFKDGKLKISEDGLL 255
FF+ V PT Y+ + IN T + D S +YGS ++R S GL+
Sbjct: 160 FFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPXLASRLRNLS------SPLGLM 213
Query: 256 LHDQDG--------------------IAVTGDVRNSWAG---------VSLLEALFIKEH 286
+Q+ I T V AG ++ + L ++EH
Sbjct: 214 AVNQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREH 273
Query: 287 NSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
N + +K NPH E LY+ R + A I + D+ +L ++
Sbjct: 274 NRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 284 KEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
+EHN + +K+ NPH + E+LY+ R + A I + D+ +L ++
Sbjct: 271 REHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 284 KEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
+EHN + +K+ NPH + E+LY+ R + A I + D+ +L ++
Sbjct: 259 REHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 308
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 284 KEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
+EHN + +K+ NPH + E+LY+ R + A I + D+ +L ++
Sbjct: 259 REHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 308
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple
Halide Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Its Catalyzed Product Hypothiocyanate Ion At 2.3a
Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion
Channel Reveals A Preferential Queue Of The Inorganic
Substrates Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex
With Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 284 KEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
+EHN + +K+ NPH + E+LY+ R + A I + D+ +L ++
Sbjct: 271 REHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide
Ions At 2.9a Resolution
Length = 595
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 284 KEHNSVCEAIKEENPHLSDEELYRFGRLVTSAVIAKVHTIDWTVELLKTD 333
+EHN + +K+ NPH + E+LY+ R + A I + D+ +L ++
Sbjct: 271 REHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSE 320
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 330 LKTDTLDAGMHANWYGLLGKKFKDTFGHVGG-AILGGFVGMKRPEIHGVPYS-LTEEFVD 387
++TD G+ NW L GK D G +I G +R ++ V S + ++ +
Sbjct: 66 VRTDAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARR--VYAVEASAIWQQARE 123
Query: 388 VYRMHSLLPDQLHLRDLTVPPGPNKSPRLAEKVD 421
V R + L D++H V PGP ++ L E+VD
Sbjct: 124 VVRFNG-LEDRVH-----VLPGPVETVELPEQVD 151
>pdb|3GDB|A Chain A, Crystal Structure Of Spr0440 Glycoside Hydrolase Domain,
Endo-D From Streptococcus Pneumoniae R6
Length = 937
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 168 DWVDHLEDTNQVELIAPNEVADKCPLSSFKFFKTKEVPTGFYEMKTGTINTRTPWWDGSA 227
DW ++DT+ + +A N V + S F E G M GTI + + W +
Sbjct: 784 DWGMTVKDTSLPKPLAENIVPGATVIDST--FPKTEGGEGIEGMLNGTITSLSDKWSSAQ 841
Query: 228 LYGSTMARLQKVRT 241
L GS RL K RT
Sbjct: 842 LSGSVDIRLTKSRT 855
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 106 NKFNSTFNIGKTQXXXXXXAGNVLMKPDPMVVATKLLARRNYKDTGKQFNMIAASWIQ 163
N+F+S ++G Q NV+ P V A+K++ N GKQFN + ++
Sbjct: 385 NEFDSDVDVGDLQMVKFIWYNNVINPTLPRVGASKIIVETN---VGKQFNFCSPETVR 439
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 106 NKFNSTFNIGKTQXXXXXXAGNVLMKPDPMVVATKLLARRNYKDTGKQFNMIAASWIQ 163
N+F+S ++G Q NV+ P V A+K++ N GKQFN + ++
Sbjct: 368 NEFDSDVDVGDLQMVKFIWYNNVINPTLPRVGASKIIVETN---VGKQFNFCSPETVR 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,385,819
Number of Sequences: 62578
Number of extensions: 870482
Number of successful extensions: 1857
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1728
Number of HSP's gapped (non-prelim): 103
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)