BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038601
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
V WT EE +F GL K GR W ISK + +RT QV S+A++YF
Sbjct: 10 VKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 54
>pdb|1XG1|A Chain A, Solution Structure Of Myb-Domain Of Human Trf2
Length = 67
Score = 33.1 bits (74), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 105 YISDSLIAPTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF 150
++ DS T+ +K WT EE G++K G G+W ISKN+
Sbjct: 3 HMEDSTTNITKKQK----WTVEESEWVKAGVQKYGEGNWAAISKNY 44
>pdb|1VF9|A Chain A, Solution Structure Of Human Trf2
Length = 64
Score = 31.6 bits (70), Expect = 0.28, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 114 TQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF 150
T + K WT EE G++K G G+W ISKN+
Sbjct: 5 TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 41
>pdb|1VFC|A Chain A, Solution Structure Of The Dna Complex Of Human Trf2
Length = 63
Score = 31.6 bits (70), Expect = 0.29, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 114 TQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF 150
T + K WT EE G++K G G+W ISKN+
Sbjct: 4 TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 40
>pdb|3SJM|A Chain A, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
pdb|3SJM|B Chain B, Crystal Structure Analysis Of Trf2-Dbd-Dna Complex
Length = 64
Score = 31.6 bits (70), Expect = 0.33, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 114 TQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF 150
T + K WT EE G++K G G+W ISKN+
Sbjct: 5 TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY 41
>pdb|1W0U|A Chain A, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna.
pdb|1W0U|B Chain B, Htrf2 Dna-Binding Domain In Complex With Telomeric Dna
Length = 55
Score = 31.2 bits (69), Expect = 0.39, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNF 150
WT EE G++K G G+W ISKN+
Sbjct: 5 WTVEESEWVKAGVQKYGEGNWAAISKNY 32
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 31.2 bits (69), Expect = 0.40, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
WT +E L + G G+W+ ++ N + T+T + H KYF
Sbjct: 11 WTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYF 54
>pdb|2YUM|A Chain A, Solution Structure Of The Myb-Like Dna-Binding Domain Of
Human Zzz3 Protein
Length = 75
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 123 WTEEEHRVFLMGL-----EKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR 169
WT EE + L E++ W+ I+ + + RT QVAS QKYF++
Sbjct: 11 WTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIK 61
>pdb|3NOL|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Trigonal Form)
pdb|3NOM|A Chain A, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
pdb|3NOM|B Chain B, Crystal Structure Of Zymomonas Mobilis Glutaminyl Cyclase
(Monoclinic Form)
Length = 262
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 88 TGVTINIDQHSNKLS-----NGYISDSLIAPTQ-DRKKGVPWTEEEHRVFLMG 134
T + ID + K++ NG ++++ P+ D G+ W +E HR+F+ G
Sbjct: 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
WT EE +E+ G DW+ I+ N++ RT Q QK
Sbjct: 9 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVL 52
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQK 165
WT EE +E+ G DW+ I+ N++ RT Q QK
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 47
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 26.9 bits (58), Expect = 8.4, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQK 165
WT EE +E+ G DW+ I+ N++ RT Q QK
Sbjct: 6 WTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQK 47
>pdb|3TED|A Chain A, Crystal Structure Of The Chd1 Dna-Binding Domain In
Complex With A Dna Duplex
Length = 271
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGI 146
WT+EE L+G+ K G G W I
Sbjct: 172 WTKEEDEKLLIGVFKYGYGSWTQI 195
>pdb|2XB0|X Chain X, Dna-Binding Domain From Saccharomyces Cerevisiae
Chromatin- Remodelling Protein Chd1
Length = 270
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGI 146
WT+EE L+G+ K G G W I
Sbjct: 171 WTKEEDEKLLIGVFKYGYGSWTQI 194
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162
K WTEEE R+ ++LG W I+K + RT V +H
Sbjct: 78 KKTSWTEEEDRIIYQAHKRLG-NRWAEIAK-LLPGRTDNAVKNH 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,783,476
Number of Sequences: 62578
Number of extensions: 157977
Number of successful extensions: 364
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 25
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)