BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038601
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9H7|DIV_ANTMA Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA
PE=2 SV=1
Length = 307
Score = 117 bits (294), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 62/71 (87%)
Query: 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKNLY 174
Q+RKKGVPWTEEEH++FLMGL+K G+GDWR IS+NFV TRTPTQVASHAQKYF+RQ +
Sbjct: 126 QERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGG 185
Query: 175 KRKRRPSLFDV 185
K KRR S+ D+
Sbjct: 186 KDKRRASIHDI 196
>sp|Q2V9B0|MY1R1_SOLTU Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
Length = 297
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 25/158 (15%)
Query: 35 LAGGLRLFGVQLAISSNSSSSSSSQLLPLKKSLSTDSFPAIPSPSSSASSSSSTGVTINI 94
G + LFGV++ + P++KS+S + P+++ +++
Sbjct: 20 FGGEIMLFGVRVKVD------------PMRKSVSLNDLSQYEHPNANNNNNGGDN----- 62
Query: 95 DQHSNKLS--NGYISDSLIAPTQ-----DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGIS 147
S+K++ GY S Q +RK+GVPWTEEEH++FL+GL+K+G+GDWRGIS
Sbjct: 63 -NESSKVAQDEGYASADDAVQHQSNSGRERKRGVPWTEEEHKLFLLGLQKVGKGDWRGIS 121
Query: 148 KNFVTTRTPTQVASHAQKYFLRQKNLYKRKRRPSLFDV 185
+NFV TRTPTQVASHAQKYFLR+ NL +R+RR SLFD+
Sbjct: 122 RNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDI 159
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKNLYKRKR 178
WT+EEH FL G++ G+G W+ I++ FV TRTPTQ+ SHAQKY+LRQK K KR
Sbjct: 379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR 433
>sp|Q54HX6|MYBI_DICDI Myb-like protein I OS=Dictyostelium discoideum GN=mybI PE=3 SV=1
Length = 977
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 114 TQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR 169
++ +K+ WT EEH F+ L K G D + IS+ +V+TR PTQV +HAQKYFLR
Sbjct: 166 SEKKKQSRYWTPEEHSRFIEALSKYGHKDVKSISQ-YVSTRNPTQVRTHAQKYFLR 220
>sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum GN=mybH PE=3 SV=1
Length = 1217
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF--LRQKN 172
PW+ EEH +FL +EK GRG+W+ IS + +R Q+ +HA+ YF + Q+N
Sbjct: 229 NTPWSNEEHELFLKAIEKYGRGNWKLIS-TLIKSRNTLQIKNHARIYFDKISQQN 282
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR-QKN 172
WT+EE R+F+ KL D + I ++ V T+T QV SHAQK+ L+ +KN
Sbjct: 153 WTKEEERLFVEAY-KLYDKDNKKIQEH-VKTKTILQVRSHAQKFALKLEKN 201
>sp|Q6R0H0|ASG4_ARATH Transcription factor ASG4 OS=Arabidopsis thaliana GN=ASG4 PE=2 SV=1
Length = 287
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 58/121 (47%), Gaps = 19/121 (15%)
Query: 56 SSSQLLPLKKSLSTDSFPAIPSPSSSASSSSSTGVTINIDQHSNKLSNGYISD---SLIA 112
S + LP+K SL F +P T TI + SN+ + + D +
Sbjct: 7 SQAHCLPMKMSLP--GFNTLPH----------TATTIPVSIRSNR-TMSFFEDPTKKVRK 53
Query: 113 PTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR-QK 171
P K WTE+EH FL L R DW+ I K FV ++T Q+ SHAQKYFL+ QK
Sbjct: 54 PYTITKSRENWTEQEHDKFLEALHLFDR-DWKKI-KAFVGSKTVIQIRSHAQKYFLKVQK 111
Query: 172 N 172
N
Sbjct: 112 N 112
>sp|Q54IF9|MYBG_DICDI Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1
Length = 423
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR-QKN 172
WT+EEH+ FL L R DW+ I ++FV ++T Q+ SHAQKYF++ QKN
Sbjct: 44 WTDEEHQKFLEALTLFDR-DWKKI-ESFVGSKTVIQIRSHAQKYFIKVQKN 92
>sp|P92973|CCA1_ARATH Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1
Length = 608
Score = 47.0 bits (110), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
WTEEEH F+ L GR W+ I ++ V T+T Q+ SHAQK+F
Sbjct: 27 WTEEEHNRFIEALRLYGRA-WQKIEEH-VATKTAVQIRSHAQKFF 69
>sp|Q86HX9|MYBK_DICDI Myb-like protein K OS=Dictyostelium discoideum GN=mybK PE=3 SV=1
Length = 894
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171
WT EEH FL +++ G D+ I+K FV TR QV +H Y QK
Sbjct: 657 WTSEEHNKFLEAVQQFGIKDYHAIAK-FVQTRNHHQVRTHVNTYLKNQK 704
>sp|Q6R0H1|LHY_ARATH Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2
Length = 645
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR 169
WTE+EH FL L GR W+ I ++ + T+T Q+ SHAQK+F +
Sbjct: 27 WTEDEHERFLEALRLYGRA-WQRIEEH-IGTKTAVQIRSHAQKFFTK 71
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 112 APTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
+PT+ V WT EE +F GL K GR W ISK + +RT QV S+A++YF
Sbjct: 110 SPTKPASYSVKWTIEEKELFEQGLAKFGR-RWTKISK-LIGSRTVLQVKSYARQYF 163
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 112 APTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
+PT+ + WT EE +F GL K GR W I+K + +RT QV S+A++YF
Sbjct: 111 SPTKPGSYSLKWTSEEKELFEQGLVKYGR-RWTKIAK-LIGSRTVLQVKSYARQYF 164
>sp|Q5RGA4|MYSM1_DANRE Histone H2A deubiquitinase MYSM1 OS=Danio rerio GN=mysm1 PE=2 SV=2
Length = 822
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
W EEE +F GL + GR W I+K + TRT QV S+A++YF
Sbjct: 102 WAEEEKELFEKGLAQFGRR-WTKIAK-LIGTRTVLQVKSYAKQYF 144
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 112 APTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171
+P + V WT EE +F GL K GR W I+ + +RT QV S+A++YF +
Sbjct: 107 SPAKPASHSVKWTVEEKELFEQGLAKFGR-RWTKIA-TLLKSRTVLQVKSYARQYFKNKV 164
Query: 172 NLYKRKRRPS 181
K P+
Sbjct: 165 KWDVEKETPT 174
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 38.5 bits (88), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162
WT E ++ L +E+ G G+W ++ + +RTPT+V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPTEVMEH 109
>sp|A0JMR6|MYSM1_XENLA Histone H2A deubiquitinase MYSM1 OS=Xenopus laevis GN=mysm1 PE=2
SV=1
Length = 818
Score = 37.4 bits (85), Expect = 0.059, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 112 APTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167
+P + V WT+EE +F GL GR W I++ + +R+ QV ++A+ YF
Sbjct: 101 SPAKASSSPVKWTKEEKNLFEQGLATFGR-RWTSIAR-LIGSRSVLQVKNYARHYF 154
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2
SV=1
Length = 386
Score = 37.0 bits (84), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 117 RKKGVPWTEEEHRVFLMGLEKLGRGDW---RGISKNFVTTRTPTQVASHAQKYFLRQKNL 173
+K V WT E HR F+ +E+LG R + V + T VASH QKY +K+L
Sbjct: 146 KKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKHL 205
Query: 174 YKRK 177
R+
Sbjct: 206 LARE 209
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162
WT E ++ L +E+ G G+W ++ + +RTP +V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEH 109
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162
WT E ++ L +E+ G G+W ++ + +RTP +V H
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEH 109
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2
SV=2
Length = 420
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 117 RKKGVPWTEEEHRVFLMGLEKLGRGDW---RGISKNFVTTRTPTQVASHAQKYFLRQKNL 173
RK V WT E HR F+ +E+LG R + V T VASH QKY +K+L
Sbjct: 152 RKVKVDWTPELHRRFVEAVEQLGVDKAVPSRILELMGVHCLTRHNVASHLQKYRSHRKHL 211
Query: 174 YKRK 177
R+
Sbjct: 212 LARE 215
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica
GN=GLK2 PE=2 SV=1
Length = 539
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 117 RKKGVPWTEEEHRVFLMGLEKLGRGDW---RGISKNFVTTRTPTQVASHAQKYFLRQKNL 173
RK V WT E HR F+ +E+LG R + + T +ASH QKY +K+L
Sbjct: 214 RKVKVDWTPELHRRFVQAVEQLGIDKAVPSRILELMGIECLTRHNIASHLQKYRSHRKHL 273
Query: 174 YKRK 177
R+
Sbjct: 274 MARE 277
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 118 KKGVPWTEEEHRVFLMGLEKLGRGDW---RGISKNFVTTRTPTQVASHAQKYFLRQKNLY 174
+K V WT E H+ F+ +E+LG R + V T T VASH QK+ +KN+
Sbjct: 296 RKKVDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNIL 355
Query: 175 KR 176
+
Sbjct: 356 PK 357
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162
WT E + L +E+ G G+W ++ + +RTP +V H
Sbjct: 70 WTSREEQSLLDAIEQYGFGNWEDMAAHVGASRTPQEVMDH 109
>sp|P19558|GAG_BIV29 Gag polyprotein OS=Bovine immunodeficiency virus (strain R29)
GN=gag PE=1 SV=2
Length = 476
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 3 RKCSHCGNTGHNSRTCSSYDNNLKGGSCSTS 33
+KC HCG GH +R C S K G CS++
Sbjct: 421 QKCYHCGKPGHQARNCRS-----KNGKCSSA 446
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 18/84 (21%)
Query: 94 IDQHSNKLSNGYI------SDSLIA---------PTQDRKKGVPWTEEEHRVFLMGLEKL 138
+D+HS L NG I S +A PT+ RK V WTE+E L G +
Sbjct: 14 MDEHSVDLLNGSILAAENPSKREVAQDVPGFERKPTKVRKPRVKWTEKETNDLLRGCQIH 73
Query: 139 GRGDWRGI---SKNFVTTRTPTQV 159
G G+W+ I + T R+P +
Sbjct: 74 GVGNWKKILLDERFHFTNRSPNDL 97
>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4
PE=2 SV=2
Length = 257
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKN 149
KKG PWT EE +V + +++ G G+WR + K
Sbjct: 13 KKG-PWTPEEDKVLVAHIQRHGHGNWRALPKQ 43
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica
GN=GLK1 PE=2 SV=1
Length = 455
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 121 VPWTEEEHRVFLMGLEKLGRGDW---RGISKNFVTTRTPTQVASHAQKYFLRQKNLYKRK 177
V WT E HR F+ +E+LG R + + + T +ASH QKY +K++ R+
Sbjct: 183 VDWTPELHRRFVQAVEQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHMIARE 242
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF-----VTTRTPTQVASHAQKY--FLR 169
+KK + WT+ H +FL + +G + + K V T VASH QKY FLR
Sbjct: 221 KKKKIQWTDSLHDLFLQAIRHIGLD--KAVPKKILAFMSVPYLTRENVASHLQKYRIFLR 278
Query: 170 Q 170
+
Sbjct: 279 R 279
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 20/130 (15%)
Query: 25 LKGGSCSTSTLAGGLRLFGVQLAISSNSSSSSSSQLLPLKKSLSTDSFPAIPSPSSSASS 84
L+ S ST AG L S ++S+ S+ L + L + P +P
Sbjct: 364 LEEDSQSTEPSAG--------LNSSQEAASAPPSKPTVLNQPLPGEKNPKVPK----GKW 411
Query: 85 SSSTGVTINIDQHSNKLSNGYISDSLIAPTQDRKKGV----PWTEEEHRVFLMGLEKLGR 140
+SS GV ++ + + AP +D + WT EE G++K G
Sbjct: 412 NSSNGV----EEKETWVEEDELFQVQAAPDEDSTTNITKKQKWTVEESEWVKAGVQKYGE 467
Query: 141 GDWRGISKNF 150
G+W ISKN+
Sbjct: 468 GNWAAISKNY 477
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF-----VTTRTPTQVASHAQKYFLRQK 171
+K V W++E H+ F+ +++LG + + K + T VASH QKY L K
Sbjct: 193 KKPRVVWSQELHQKFVSAVQQLGLD--KAVPKKILDLMSIEGLTRENVASHLQKYRLYLK 250
Query: 172 NLYKRKRR---PSLFDVMPWAWFLLVLL 196
+ + +++ P F ++F + L
Sbjct: 251 KIDEGQQQNMTPDAFGTRDSSYFQMAQL 278
>sp|P06240|LCK_MOUSE Proto-oncogene tyrosine-protein kinase LCK OS=Mus musculus GN=Lck
PE=1 SV=4
Length = 509
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 93 NIDQHSNKLSNGYISDSLIAPTQDRKKGVPWTEEEHRV---FLMGLEKLGRGDWRGISKN 149
++ +H S+G + L P Q +K PW E+E V L +E+LG G + +
Sbjct: 204 DLVRHYTNASDG-LCTKLSRPCQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMG 262
Query: 150 FVTTRTPTQVASHAQ-----KYFLRQKNLYKRKRRPSL 182
+ T V S Q FL + NL K+ + P L
Sbjct: 263 YYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHPRL 300
>sp|Q01621|LCK_RAT Proto-oncogene tyrosine-protein kinase LCK OS=Rattus norvegicus
GN=Lck PE=2 SV=3
Length = 509
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 93 NIDQHSNKLSNGYISDSLIAPTQDRKKGVPWTEEEHRV---FLMGLEKLGRGDWRGISKN 149
++ +H S+G + L P Q +K PW E+E V L +E+LG G + +
Sbjct: 204 DLVRHYTNASDG-LCTKLSRPCQTQKPQKPWWEDEWEVPRETLKLVERLGAGQFGEVWMG 262
Query: 150 FVTTRTPTQVASHAQ-----KYFLRQKNLYKRKRRPSL 182
+ T V S Q FL + NL K+ + P L
Sbjct: 263 YYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHPRL 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,453,998
Number of Sequences: 539616
Number of extensions: 2713682
Number of successful extensions: 21007
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 212
Number of HSP's that attempted gapping in prelim test: 15493
Number of HSP's gapped (non-prelim): 3179
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)