Query 038601
Match_columns 199
No_of_seqs 200 out of 625
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 12:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01557 myb_SHAQKYF myb-like 99.7 5.3E-18 1.1E-22 119.2 6.1 53 118-170 1-57 (57)
2 PF00249 Myb_DNA-binding: Myb- 99.6 1.3E-15 2.8E-20 101.3 5.1 46 120-166 1-47 (48)
3 smart00717 SANT SANT SWI3, AD 99.3 2.4E-12 5.3E-17 81.4 5.9 46 121-167 2-47 (49)
4 cd00167 SANT 'SWI3, ADA2, N-Co 99.3 2.8E-12 6E-17 80.3 5.4 45 122-167 1-45 (45)
5 PF13921 Myb_DNA-bind_6: Myb-l 99.1 5E-11 1.1E-15 81.5 4.6 43 123-167 1-43 (60)
6 PLN03212 Transcription repress 99.0 5.6E-10 1.2E-14 98.6 5.7 50 118-168 23-73 (249)
7 KOG0457 Histone acetyltransfer 98.9 1.3E-09 2.7E-14 102.4 6.3 55 116-171 68-122 (438)
8 PLN03091 hypothetical protein; 98.9 2.4E-09 5.1E-14 101.1 5.3 53 116-169 10-63 (459)
9 PLN03212 Transcription repress 98.8 1.3E-08 2.8E-13 90.0 6.0 51 118-170 76-126 (249)
10 KOG0048 Transcription factor, 98.7 1.9E-08 4.2E-13 86.5 4.1 48 120-168 9-57 (238)
11 PLN03091 hypothetical protein; 98.7 5.4E-08 1.2E-12 92.0 7.3 50 119-170 66-115 (459)
12 KOG0048 Transcription factor, 98.5 1.8E-07 3.9E-12 80.6 6.8 59 103-171 53-111 (238)
13 COG5114 Histone acetyltransfer 98.4 4.7E-07 1E-11 83.7 5.1 58 111-169 54-111 (432)
14 COG5259 RSC8 RSC chromatin rem 98.2 1.1E-06 2.4E-11 83.9 4.5 44 119-164 278-321 (531)
15 KOG0049 Transcription factor, 98.2 3.1E-06 6.8E-11 83.9 6.6 73 116-193 356-428 (939)
16 KOG0724 Zuotin and related mol 98.1 1.5E-06 3.4E-11 77.1 2.5 78 113-190 157-239 (335)
17 KOG1279 Chromatin remodeling f 98.0 6.4E-06 1.4E-10 79.2 5.4 44 118-163 251-294 (506)
18 KOG0049 Transcription factor, 97.7 6.6E-05 1.4E-09 74.8 6.1 78 117-195 409-496 (939)
19 KOG4329 DNA-binding protein [G 97.4 0.00018 4E-09 67.6 4.9 51 117-171 274-324 (445)
20 PLN03162 golden-2 like transcr 97.1 0.0011 2.4E-08 62.8 6.7 58 115-173 232-293 (526)
21 KOG0050 mRNA splicing protein 96.9 0.00077 1.7E-08 65.7 3.4 50 118-168 5-54 (617)
22 PF13837 Myb_DNA-bind_4: Myb/S 96.6 0.0038 8.3E-08 44.9 4.7 52 121-173 2-70 (90)
23 COG5118 BDP1 Transcription ini 95.8 0.016 3.5E-07 55.2 5.4 45 115-161 360-404 (507)
24 KOG3841 TEF-1 and related tran 95.7 0.019 4.1E-07 54.5 5.5 57 118-175 74-150 (455)
25 KOG4468 Polycomb-group transcr 95.7 0.015 3.4E-07 57.8 5.1 51 120-171 88-147 (782)
26 KOG4167 Predicted DNA-binding 95.6 0.013 2.8E-07 59.4 4.3 42 120-163 619-660 (907)
27 COG5147 REB1 Myb superfamily p 95.6 0.0062 1.3E-07 59.1 2.0 56 115-171 15-70 (512)
28 PF00098 zf-CCHC: Zinc knuckle 95.5 0.011 2.3E-07 33.0 1.9 18 3-20 1-18 (18)
29 smart00426 TEA TEA domain. 95.4 0.017 3.6E-07 42.7 3.1 44 120-164 3-66 (68)
30 PF09111 SLIDE: SLIDE; InterP 95.3 0.04 8.6E-07 44.0 5.2 50 117-166 46-109 (118)
31 PF08914 Myb_DNA-bind_2: Rap1 95.1 0.024 5.1E-07 41.0 3.2 52 120-171 2-61 (65)
32 KOG0051 RNA polymerase I termi 95.1 0.025 5.5E-07 56.0 4.3 48 119-169 383-430 (607)
33 KOG0051 RNA polymerase I termi 94.8 0.037 8.1E-07 54.8 4.6 52 118-170 434-510 (607)
34 COG5147 REB1 Myb superfamily p 94.4 0.061 1.3E-06 52.4 5.0 53 118-172 70-122 (512)
35 PF14392 zf-CCHC_4: Zinc knuck 94.2 0.018 4E-07 38.8 0.7 19 1-19 30-48 (49)
36 PLN03142 Probable chromatin-re 94.1 0.079 1.7E-06 55.3 5.4 48 122-170 826-873 (1033)
37 PF13873 Myb_DNA-bind_5: Myb/S 94.0 0.16 3.5E-06 36.1 5.2 52 120-171 2-73 (78)
38 PF15288 zf-CCHC_6: Zinc knuck 93.9 0.03 6.4E-07 37.5 1.3 20 3-22 2-23 (40)
39 KOG3554 Histone deacetylase co 93.9 0.027 5.9E-07 55.0 1.5 45 117-162 282-326 (693)
40 KOG0724 Zuotin and related mol 93.8 0.012 2.6E-07 52.4 -1.0 50 121-172 54-103 (335)
41 KOG4282 Transcription factor G 93.6 1.2 2.7E-05 40.0 11.5 58 120-177 54-123 (345)
42 TIGR02894 DNA_bind_RsfA transc 92.6 0.3 6.4E-06 41.4 5.5 51 120-172 4-60 (161)
43 PF12776 Myb_DNA-bind_3: Myb/S 92.4 0.36 7.7E-06 35.1 5.2 46 122-167 1-62 (96)
44 PF01285 TEA: TEA/ATTS domain 90.2 0.23 5E-06 47.3 2.9 48 118-166 47-112 (431)
45 PLN03142 Probable chromatin-re 88.3 1.2 2.5E-05 46.9 6.5 51 118-168 924-985 (1033)
46 smart00343 ZnF_C2HC zinc finge 87.6 0.31 6.7E-06 28.6 1.1 17 4-20 1-17 (26)
47 KOG0050 mRNA splicing protein 87.1 0.62 1.3E-05 46.1 3.5 48 118-168 57-104 (617)
48 PRK13923 putative spore coat p 86.5 0.81 1.8E-05 39.0 3.5 51 119-170 4-59 (170)
49 KOG1194 Predicted DNA-binding 85.9 1.6 3.6E-05 42.6 5.7 42 119-162 186-227 (534)
50 PF04504 DUF573: Protein of un 81.0 4.4 9.6E-05 31.1 5.3 42 120-162 4-57 (98)
51 KOG2009 Transcription initiati 76.8 3.2 6.8E-05 41.5 4.1 50 116-170 405-454 (584)
52 PF06461 DUF1086: Domain of Un 74.9 9.3 0.0002 32.0 5.8 54 121-175 39-94 (145)
53 COG5082 AIR1 Arginine methyltr 74.5 1.8 4E-05 37.5 1.6 18 2-19 97-114 (190)
54 PF11035 SnAPC_2_like: Small n 73.5 19 0.00042 33.9 8.1 49 119-168 20-71 (344)
55 PF13325 MCRS_N: N-terminal re 71.9 4.9 0.00011 35.1 3.6 49 118-166 71-125 (199)
56 KOG1194 Predicted DNA-binding 71.6 8.7 0.00019 37.8 5.6 54 115-170 364-417 (534)
57 KOG0384 Chromodomain-helicase 70.4 2.6 5.7E-05 45.4 1.9 28 119-146 1132-1159(1373)
58 PF13248 zf-ribbon_3: zinc-rib 67.6 3.6 7.8E-05 24.4 1.4 20 1-20 1-21 (26)
59 PF08074 CHDCT2: CHDCT2 (NUC03 65.6 3.5 7.7E-05 35.4 1.5 29 119-147 2-30 (173)
60 PF09420 Nop16: Ribosome bioge 64.0 17 0.00037 29.9 5.2 48 118-166 112-162 (164)
61 KOG0385 Chromatin remodeling c 63.8 11 0.00024 39.4 4.8 50 121-172 796-845 (971)
62 PF14952 zf-tcix: Putative tre 59.6 5.8 0.00013 27.2 1.4 20 3-22 12-32 (44)
63 smart00595 MADF subfamily of S 53.1 24 0.00052 25.1 3.8 50 142-193 29-85 (89)
64 PF01388 ARID: ARID/BRIGHT DNA 52.5 27 0.0006 25.3 4.1 28 141-169 58-90 (92)
65 smart00501 BRIGHT BRIGHT, ARID 49.2 53 0.0012 24.1 5.2 30 141-171 54-88 (93)
66 PF10571 UPF0547: Uncharacteri 48.2 9.4 0.0002 23.1 0.9 10 2-11 14-23 (26)
67 PF13404 HTH_AsnC-type: AsnC-t 46.4 48 0.001 21.6 4.1 38 126-165 3-40 (42)
68 COG5082 AIR1 Arginine methyltr 46.0 11 0.00024 32.8 1.2 17 3-19 61-77 (190)
69 PF08281 Sigma70_r4_2: Sigma-7 43.4 80 0.0017 20.4 4.9 39 126-167 13-51 (54)
70 PTZ00368 universal minicircle 42.6 16 0.00036 29.0 1.7 20 3-22 78-97 (148)
71 PF11626 Rap1_C: TRF2-interact 41.1 12 0.00027 27.7 0.8 16 118-133 45-60 (87)
72 PRK11179 DNA-binding transcrip 40.7 49 0.0011 26.4 4.2 40 125-166 8-47 (153)
73 PTZ00368 universal minicircle 39.0 20 0.00043 28.5 1.7 20 3-22 53-72 (148)
74 PHA00442 host recBCD nuclease 38.7 31 0.00067 24.9 2.4 24 124-147 24-47 (59)
75 PF00191 Annexin: Annexin; In 38.1 33 0.00072 23.1 2.5 41 129-171 4-44 (66)
76 PF10561 UPF0565: Uncharacteri 37.6 31 0.00068 31.8 2.9 28 113-140 274-301 (303)
77 KOG2656 DNA methyltransferase 36.3 49 0.0011 32.2 4.1 51 120-171 130-185 (445)
78 smart00344 HTH_ASNC helix_turn 33.3 85 0.0018 23.0 4.2 40 125-166 2-41 (108)
79 PRK11169 leucine-responsive tr 33.3 69 0.0015 25.9 4.0 41 125-167 13-53 (164)
80 PF06397 Desulfoferrod_N: Desu 31.7 17 0.00037 23.7 0.2 8 4-11 8-15 (36)
81 PF13696 zf-CCHC_2: Zinc knuck 31.5 24 0.00052 22.6 0.8 19 3-21 9-27 (32)
82 TIGR02937 sigma70-ECF RNA poly 31.5 1.5E+02 0.0033 21.3 5.3 46 122-171 110-155 (158)
83 PF08792 A2L_zn_ribbon: A2L zi 31.3 22 0.00048 22.5 0.7 10 3-12 4-13 (33)
84 PF10545 MADF_DNA_bdg: Alcohol 30.6 54 0.0012 22.4 2.6 31 142-173 28-59 (85)
85 PF05634 APO_RNA-bind: APO RNA 29.3 32 0.00069 30.4 1.5 20 3-22 99-123 (204)
86 PF13917 zf-CCHC_3: Zinc knuck 28.6 36 0.00077 22.9 1.3 18 3-20 5-22 (42)
87 KOG4400 E3 ubiquitin ligase in 28.2 30 0.00066 30.1 1.2 18 4-21 145-162 (261)
88 PF02509 Rota_NS35: Rotavirus 26.0 41 0.00088 31.3 1.6 58 120-185 194-260 (316)
89 KOG0119 Splicing factor 1/bran 25.7 37 0.00081 33.8 1.4 19 3-21 286-304 (554)
90 PF06170 DUF983: Protein of un 25.0 32 0.0007 26.0 0.7 13 1-13 7-19 (86)
91 cd03151 CD81_like_LEL Tetraspa 24.2 48 0.001 23.8 1.4 16 4-21 42-64 (84)
92 CHL00112 rpl28 ribosomal prote 23.8 36 0.00078 24.6 0.7 11 1-11 1-11 (63)
93 PLN00111 accumulation of photo 22.9 46 0.001 32.0 1.4 21 3-23 121-146 (399)
94 KOG0819 Annexin [Intracellular 22.1 1.6E+02 0.0034 27.8 4.7 45 125-171 91-135 (321)
95 PF13719 zinc_ribbon_5: zinc-r 21.7 40 0.00087 21.4 0.6 8 4-11 27-34 (37)
96 cd08311 Death_p75NR Death doma 21.6 69 0.0015 23.6 1.9 24 125-152 2-26 (77)
97 PF12451 VPS11_C: Vacuolar pro 21.5 78 0.0017 21.5 2.0 27 124-152 17-43 (49)
98 PF03884 DUF329: Domain of unk 21.3 29 0.00062 24.8 -0.2 10 1-10 1-10 (57)
No 1
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.73 E-value=5.3e-18 Score=119.17 Aligned_cols=53 Identities=49% Similarity=0.717 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCh---hhhhhhhcCCC-CHHHHHHHHHHHHHHh
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDW---RGISKNFVTTR-TPTQVASHAQKYFLRQ 170 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdW---k~IAr~~V~TR-T~~QVrsHaQKYf~rl 170 (199)
|++..||+|||.+||+||+.||.|+| +.|++.++.++ |+.||++|+||||+++
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k~ 57 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 45789999999999999999999999 99996445578 9999999999999863
No 2
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.60 E-value=1.3e-15 Score=101.25 Aligned_cols=46 Identities=35% Similarity=0.617 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT-TRTPTQVASHAQKY 166 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrsHaQKY 166 (199)
+.+||+|||++|++||++||.++|+.|| .+|+ +||+.||++||++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia-~~~~~~Rt~~qc~~~~~~~ 47 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIA-KRMPGGRTAKQCRSRYQNL 47 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHH-HHHSSSSTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHH-HHcCCCCCHHHHHHHHHhh
Confidence 3589999999999999999996799999 5999 99999999999988
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=99.34 E-value=2.4e-12 Score=81.38 Aligned_cols=46 Identities=26% Similarity=0.503 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
.+||+||+.+|+.++++||..+|..|| .++++||+.||+.+|.+++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia-~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIA-KELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 589999999999999999966999999 5999999999999988764
No 4
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=99.33 E-value=2.8e-12 Score=80.27 Aligned_cols=45 Identities=33% Similarity=0.705 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 122 PWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 122 ~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
+||+||+.+|+.++.+||.++|..|| .++++||+.||+.||++++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia-~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIA-KELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHH-hHcCCCCHHHHHHHHHHhC
Confidence 59999999999999999966999999 5999999999999998763
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.15 E-value=5e-11 Score=81.51 Aligned_cols=43 Identities=33% Similarity=0.659 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 123 WTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 123 WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
||+||+.+|++++++||. +|+.|| .+|++||+.||+.||.+++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~~Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIA-EHLGNRTPKQCRNRWRNHL 43 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHH-HHSTTS-HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHH-HHHCcCCHHHHHHHHHHHC
Confidence 999999999999999997 999999 5898899999999988744
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.99 E-value=5.6e-10 Score=98.62 Aligned_cols=50 Identities=28% Similarity=0.471 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc-CCCCHHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFV-TTRTPTQVASHAQKYFL 168 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V-~TRT~~QVrsHaQKYf~ 168 (199)
.++.+||+|||++|++++++||..+|+.||+ .+ .+||+.|||.||.+|+.
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk-~~g~gRT~KQCReRW~N~L~ 73 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPK-RAGLLRCGKSCRLRWMNYLR 73 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHH-hhhcCCCcchHHHHHHHhhc
Confidence 4577999999999999999999989999995 67 59999999999999974
No 7
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.94 E-value=1.3e-09 Score=102.41 Aligned_cols=55 Identities=25% Similarity=0.465 Sum_probs=50.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
-+.-...||.+||.+||+|++.||-|||..|| ++|+|||..+|+.|+.|+|+...
T Consensus 68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA-~hIGtKtkeeck~hy~k~fv~s~ 122 (438)
T KOG0457|consen 68 FPILDPSWTADEEILLLEAAETYGFGNWQDIA-DHIGTKTKEECKEHYLKHFVNSP 122 (438)
T ss_pred CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHH-HHHcccchHHHHHHHHHHHhcCc
Confidence 34556789999999999999999999999999 69999999999999999999654
No 8
>PLN03091 hypothetical protein; Provisional
Probab=98.86 E-value=2.4e-09 Score=101.09 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=46.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHHH
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT-TRTPTQVASHAQKYFLR 169 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrsHaQKYf~r 169 (199)
.+.++++||+|||++|+++|++||.++|+.||+ .++ +||++|||.||.+|+.-
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk-~~g~gRT~KQCRERW~NyLdP 63 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPK-QAGLQRCGKSCRLRWINYLRP 63 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhh-hhccCcCcchHhHHHHhccCC
Confidence 345677899999999999999999999999995 665 89999999999988753
No 9
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.75 E-value=1.3e-08 Score=90.02 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
.+..+||+||++++++.+++||. .|..|| .+|++||..||++||..++.+.
T Consensus 76 I~kgpWT~EED~lLlel~~~~Gn-KWs~IA-k~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 76 VKRGGITSDEEDLILRLHRLLGN-RWSLIA-GRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred cccCCCChHHHHHHHHHHHhccc-cHHHHH-hhcCCCCHHHHHHHHHHHHhHH
Confidence 44789999999999999999998 899999 5999999999999998776554
No 10
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.66 E-value=1.9e-08 Score=86.53 Aligned_cols=48 Identities=19% Similarity=0.357 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT-TRTPTQVASHAQKYFL 168 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrsHaQKYf~ 168 (199)
++|||.|||.+|++.|++||.++|..||+ ..+ .|+.+|||-||-+|+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k-~~gl~R~GKSCRlRW~NyLr 57 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPK-LAGLRRCGKSCRLRWTNYLR 57 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhh-hcCCCccchHHHHHhhcccC
Confidence 58999999999999999999999999995 999 9999999999999964
No 11
>PLN03091 hypothetical protein; Provisional
Probab=98.66 E-value=5.4e-08 Score=92.03 Aligned_cols=50 Identities=16% Similarity=0.303 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
++++||+|||++||+.+++||. .|..|| .+|+.||..||++||...+.+.
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIA-k~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIA-AQLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHH-HhcCCCCHHHHHHHHHHHHHHH
Confidence 3679999999999999999998 999999 5999999999999998776654
No 12
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.54 E-value=1.8e-07 Score=80.56 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=50.0
Q ss_pred CcccCCCCCCCccCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 103 NGYISDSLIAPTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 103 ~GY~Sd~~~~~~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
-.|+.+++. ++.||+|||++++++..+||. .|..||+ ++++||...|++||.-...+..
T Consensus 53 ~NyLrP~ik--------rg~fT~eEe~~Ii~lH~~~GN-rWs~IA~-~LPGRTDNeIKN~Wnt~lkkkl 111 (238)
T KOG0048|consen 53 TNYLRPDLK--------RGNFSDEEEDLIIKLHALLGN-RWSLIAG-RLPGRTDNEVKNHWNTHLKKKL 111 (238)
T ss_pred hcccCCCcc--------CCCCCHHHHHHHHHHHHHHCc-HHHHHHh-hCCCcCHHHHHHHHHHHHHHHH
Confidence 356655544 789999999999999999999 8999994 9999999999999977765444
No 13
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=98.36 E-value=4.7e-07 Score=83.67 Aligned_cols=58 Identities=22% Similarity=0.497 Sum_probs=51.2
Q ss_pred CCCccCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 038601 111 IAPTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR 169 (199)
Q Consensus 111 ~~~~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~r 169 (199)
+.....+.-...|+.+|+.+|+++++.+|-|+|..|| +||+.|+..+|++|+.|||+.
T Consensus 54 ietnsypI~~e~WgadEEllli~~~~TlGlGNW~dIa-dyiGsr~kee~k~HylK~y~e 111 (432)
T COG5114 54 IETNSYPIGEEGWGADEELLLIECLDTLGLGNWEDIA-DYIGSRAKEEIKSHYLKMYDE 111 (432)
T ss_pred eeccCccccCCCcCchHHHHHHHHHHhcCCCcHHHHH-HHHhhhhhHHHHHHHHHHHhh
Confidence 3334445567789999999999999999999999999 699999999999999999983
No 14
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=98.22 E-value=1.1e-06 Score=83.89 Aligned_cols=44 Identities=30% Similarity=0.582 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQ 164 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQ 164 (199)
....||.+|..+||+||+.||. ||.+||+ +|+|||+.||--|+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~-HVgtKt~EqCIl~FL 321 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVAR-HVGTKTKEQCILHFL 321 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHH-HhCCCCHHHHHHHHH
Confidence 5568999999999999999999 9999995 999999999998654
No 15
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.18 E-value=3.1e-06 Score=83.86 Aligned_cols=73 Identities=18% Similarity=0.303 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhhccCCCCCCccccchhhHHHH
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKNLYKRKRRPSLFDVMPWAWFLL 193 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~~~K~krr~Sl~Di~~~~~~~~ 193 (199)
+..+.++||.+||.+|+.|+.+||..||-.|- ..|++|+..|||.+|.+.+ ..-.| +-|++|.|=+.-+-|+-
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R-~~vPnRSdsQcR~RY~nvL---~~s~K-~~rW~l~edeqL~~~V~ 428 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVR-QAVPNRSDSQCRERYTNVL---NRSAK-VERWTLVEDEQLLYAVK 428 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhCccchhhHH-HhcCCccHHHHHHHHHHHH---HHhhc-cCceeecchHHHHHHHH
Confidence 34668899999999999999999999999998 6999999999999765544 33333 67888877655554543
No 16
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.5e-06 Score=77.10 Aligned_cols=78 Identities=46% Similarity=0.607 Sum_probs=72.1
Q ss_pred CccCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHH-----HHHHHhhhhccCCCCCCccccch
Q 038601 113 PTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQ-----KYFLRQKNLYKRKRRPSLFDVMP 187 (199)
Q Consensus 113 ~~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQ-----KYf~rl~~~~K~krr~Sl~Di~~ 187 (199)
....++.+.+|++.++.+++.++.++|+++|..|+++++..|++.|+.+|+| +|+.+.....+.++|.+++|+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~s~a~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 236 (335)
T KOG0724|consen 157 AEELRRKGTPVTERERKLVLLALKKDGKIDWRKISQNVEKERTPEQVASHAQEKAFEKALARQKSGEEEKRRKSIEDITT 236 (335)
T ss_pred hhhhhhccchhHHHHHHHHHhhhcccccccceechhhhhhhhcchhhhhhhhhhhhHHHHHHHhhhccccccchhhhhhc
Confidence 3456788999999999999999999999999999999999999999999999 99999999999999999999976
Q ss_pred hhH
Q 038601 188 WAW 190 (199)
Q Consensus 188 ~~~ 190 (199)
..+
T Consensus 237 ~~~ 239 (335)
T KOG0724|consen 237 ASE 239 (335)
T ss_pred cch
Confidence 554
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=98.03 E-value=6.4e-06 Score=79.18 Aligned_cols=44 Identities=27% Similarity=0.515 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHA 163 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHa 163 (199)
..+..||++|..+||+||++||. ||.+|| .+|++||..||-.|.
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa-~hVg~ks~eqCI~kF 294 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVA-DHVGTKSQEQCILKF 294 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHH-hccCCCCHHHHHHHH
Confidence 44678999999999999999999 999999 699999999999864
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.69 E-value=6.6e-05 Score=74.75 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=59.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh----------hccCCCCCCccccc
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKN----------LYKRKRRPSLFDVM 186 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~----------~~K~krr~Sl~Di~ 186 (199)
+-|...||-.||++|+.+|++||.|.|-+|| .+++.||.+|.+++-..+...-.+ ..+.++|++=.|..
T Consensus 409 s~K~~rW~l~edeqL~~~V~~YG~g~WakcA-~~Lp~~t~~q~~rrR~R~~~~k~rl~~~~~~~v~~~~sg~rS~eede~ 487 (939)
T KOG0049|consen 409 SAKVERWTLVEDEQLLYAVKVYGKGNWAKCA-MLLPKKTSRQLRRRRLRLIAAKLRLAAGFCNAVDAMKSGRRSPEEDEL 487 (939)
T ss_pred hhccCceeecchHHHHHHHHHHccchHHHHH-HHccccchhHHHHHHHHHHHHHHHHhcCCccccccccccCCCcccccc
Confidence 4667889999999999999999999999999 599999998866554443322221 12456788888888
Q ss_pred hhhHHHHHH
Q 038601 187 PWAWFLLVL 195 (199)
Q Consensus 187 ~~~~~~~~~ 195 (199)
...++++.+
T Consensus 488 eq~dWv~a~ 496 (939)
T KOG0049|consen 488 EQEDWVEAE 496 (939)
T ss_pred chhhhHHhh
Confidence 777766543
No 19
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=97.42 E-value=0.00018 Score=67.58 Aligned_cols=51 Identities=39% Similarity=0.583 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
|.--..|++||.+.|-+||+.||+ |+..|-++-|+||+..+|-. -||++.+
T Consensus 274 rd~l~~wsEeEcr~FEegl~~yGK-DF~lIr~nkvrtRsvgElVe---yYYlWKk 324 (445)
T KOG4329|consen 274 RDDLSGWSEEECRNFEEGLELYGK-DFHLIRANKVRTRSVGELVE---YYYLWKK 324 (445)
T ss_pred ccccccCCHHHHHHHHHHHHHhcc-cHHHHHhcccccchHHHHHH---HHHHhhc
Confidence 444567999999999999999999 99999999999999999986 3555544
No 20
>PLN03162 golden-2 like transcription factor; Provisional
Probab=97.13 E-value=0.0011 Score=62.79 Aligned_cols=58 Identities=36% Similarity=0.476 Sum_probs=45.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCC--Chhhhhhhh--cCCCCHHHHHHHHHHHHHHhhhh
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRG--DWRGISKNF--VTTRTPTQVASHAQKYFLRQKNL 173 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkG--dWk~IAr~~--V~TRT~~QVrsHaQKYf~rl~~~ 173 (199)
..+|.+..||+|=|++|++||+++|.. -=+.|- ++ |..=|..+|+||.|||.+.++++
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~IL-elMnV~GLTRenVKSHLQKYRl~rk~l 293 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRIL-ELMGVQCLTRHNIASHLQKYRSHRRHL 293 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHH-HHcCCCCcCHHHHHHHHHHHHHhcccc
Confidence 456778999999999999999999931 223444 24 44678999999999999987743
No 21
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.88 E-value=0.00077 Score=65.66 Aligned_cols=50 Identities=22% Similarity=0.483 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
.+++.|+..||+.+-.++.+||+..|..|+ +.+.-+|+.||+.+|.+|..
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~-sll~~kt~rqC~~rw~e~ld 54 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIA-SLLNRKTARQCKARWEEWLD 54 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHH-HHHhhcchhHHHHHHHHHhC
Confidence 568899999999999999999999999999 69999999999999998864
No 22
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.64 E-value=0.0038 Score=44.86 Aligned_cols=52 Identities=23% Similarity=0.470 Sum_probs=35.5
Q ss_pred CCCCHHHHHHHHHHHHH------hC-----CC--ChhhhhhhhcC----CCCHHHHHHHHHHHHHHhhhh
Q 038601 121 VPWTEEEHRVFLMGLEK------LG-----RG--DWRGISKNFVT----TRTPTQVASHAQKYFLRQKNL 173 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~k------yG-----kG--dWk~IAr~~V~----TRT~~QVrsHaQKYf~rl~~~ 173 (199)
..||++|-..||+.+.. ++ ++ -|+.||. .+. .||+.||+..+..-..+....
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~-~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~ 70 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAE-ELAEHGYNRTPEQCRNKWKNLKKKYKKI 70 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHH-HHHHHC----HHHHHHHHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47999999999999887 22 11 5999995 554 699999999998765555543
No 23
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=95.79 E-value=0.016 Score=55.18 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=41.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHH
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVAS 161 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrs 161 (199)
..++.-.+||.+|-++|..||.++|. |+..|| +++++|...||+.
T Consensus 360 g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs-~lfP~R~RkqIKa 404 (507)
T COG5118 360 GKKKGALRWSKKEIEKFYKALSIWGT-DFSLIS-SLFPNRERKQIKA 404 (507)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHH-HhcCchhHHHHHH
Confidence 45677889999999999999999999 999999 6999999999997
No 24
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=95.71 E-value=0.019 Score=54.50 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHh-------------C--CCChhhhhhhhcC-----CCCHHHHHHHHHHHHHHhhhhcc
Q 038601 118 KKGVPWTEEEHRVFLMGLEKL-------------G--RGDWRGISKNFVT-----TRTPTQVASHAQKYFLRQKNLYK 175 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~ky-------------G--kGdWk~IAr~~V~-----TRT~~QVrsHaQKYf~rl~~~~K 175 (199)
..-+.|+++=|..|.|||..| | .|+=..||+ ||. |||.+||-+|-|-.-++..+..+
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIar-YIKlrtgktRTrKQVSSHIQVlarrk~reiq 150 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIAR-YIKLRTGKTRTRKQVSSHIQVLARRKLREIQ 150 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHH-HHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 446789999999999999988 2 456788996 986 79999999999977665555433
No 25
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=95.70 E-value=0.015 Score=57.82 Aligned_cols=51 Identities=24% Similarity=0.428 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhh---------hhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGIS---------KNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IA---------r~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
++.||-.|+.-|..||+++|+ |+..|- ..-+..+|.-|||.||-+-..++.
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 678999999999999999999 999992 234556889999987655555554
No 26
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=95.64 E-value=0.013 Score=59.42 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHA 163 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHa 163 (199)
...||..|-++|-.||-.|-+ |+..|+ ..|+++|..||..+|
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~K-DF~~v~-km~~~KtVaqCVeyY 660 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYSK-DFIFVQ-KMVKSKTVAQCVEYY 660 (907)
T ss_pred cccccHHHHHHHHHHHHHhcc-cHHHHH-HHhccccHHHHHHHH
Confidence 567999999999999999988 999999 599999999998744
No 27
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=95.62 E-value=0.0062 Score=59.11 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=48.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
+...+.+.|+..||..++.++++||..+|..||. .+..+|+.||+.||..|...+.
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas-~~~~~~~kq~~~rw~~~lnp~l 70 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVAS-LLISSTGKQSSNRWNNHLNPQL 70 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhcccccHHHHHH-Hhcccccccccchhhhhhchhc
Confidence 4456677999999999999999999999999995 6666999999999977766554
No 28
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=95.51 E-value=0.011 Score=33.04 Aligned_cols=18 Identities=50% Similarity=1.193 Sum_probs=16.7
Q ss_pred CcCCCCCCCCCCCccCCC
Q 038601 3 RKCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~ 20 (199)
|+|-.||..||-++-||.
T Consensus 1 ~~C~~C~~~GH~~~~Cp~ 18 (18)
T PF00098_consen 1 RKCFNCGEPGHIARDCPK 18 (18)
T ss_dssp SBCTTTSCSSSCGCTSSS
T ss_pred CcCcCCCCcCcccccCcc
Confidence 689999999999999984
No 29
>smart00426 TEA TEA domain.
Probab=95.39 E-value=0.017 Score=42.70 Aligned_cols=44 Identities=27% Similarity=0.339 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---------------ChhhhhhhhcC-----CCCHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRG---------------DWRGISKNFVT-----TRTPTQVASHAQ 164 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkG---------------dWk~IAr~~V~-----TRT~~QVrsHaQ 164 (199)
...|.++=|..|++||+.|-.- +=..|+ +||- .||++||.||-|
T Consensus 3 ~~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs-~YI~~~tGk~Rt~KQVsShIQ 66 (68)
T smart00426 3 EGVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQ 66 (68)
T ss_pred CCcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHH-HHHHHHhCCccchhhhcchhe
Confidence 3569999999999999988422 223455 3554 499999999977
No 30
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.27 E-value=0.04 Score=43.96 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hhcCCCCHHHHHHHHHHH
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGR---GDWRGISK-----------NFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGk---GdWk~IAr-----------~~V~TRT~~QVrsHaQKY 166 (199)
..++..||+|||+-+|..+.+||- |.|..|-+ =|+.+||+.++.-|+.--
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tL 109 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTL 109 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHH
Confidence 355778999999999999999999 99999964 245689999999888643
No 31
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=95.11 E-value=0.024 Score=40.98 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 120 GVPWTEEEHRVFLMGLEKL--------GRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~ky--------GkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
+.++|+|||..++.-|+.+ |..-|+.+++.++...|-.--|+||.|.+....
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~ 61 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP 61 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 4689999999999999766 333699999867668888888998887765543
No 32
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=95.08 E-value=0.025 Score=55.97 Aligned_cols=48 Identities=27% Similarity=0.439 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR 169 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~r 169 (199)
+++.||+||++.+...+.++|. +|..|++ .| +|.|.-|+.+|..|..-
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~-~l-gr~P~~crd~wr~~~~~ 430 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGK-AL-GRMPMDCRDRWRQYVKC 430 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHH-HH-ccCcHHHHHHHHHhhcc
Confidence 6789999999999999999998 9999994 55 58899999999987543
No 33
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=94.78 E-value=0.037 Score=54.81 Aligned_cols=52 Identities=19% Similarity=0.263 Sum_probs=42.1
Q ss_pred CCCCCCCHHHHHHHHHHHH-------HhC------------------CCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 118 KKGVPWTEEEHRVFLMGLE-------KLG------------------RGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~-------kyG------------------kGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
.++.+||.||+++||..++ +|- .=.|..|+ +.++||+..|||.+|++-..+-
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vs-e~~~TR~~~qCr~Kw~kl~~~~ 510 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVS-EMLGTRSRIQCRYKWYKLTTSP 510 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhh-HhhcCCCcchHHHHHHHHHhhH
Confidence 5678999999999999995 441 11799999 5999999999999887765443
No 34
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=94.41 E-value=0.061 Score=52.41 Aligned_cols=53 Identities=23% Similarity=0.368 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
.+...|++||+..++..-.++|. .|..|| .+|+.||..||..+|++-+.....
T Consensus 70 lk~~~~~~eed~~li~l~~~~~~-~wstia-~~~d~rt~~~~~ery~~~~~~~~s 122 (512)
T COG5147 70 LKKKNWSEEEDEQLIDLDKELGT-QWSTIA-DYKDRRTAQQCVERYVNTLEDLSS 122 (512)
T ss_pred cccccccHHHHHHHHHHHHhcCc-hhhhhc-cccCccchHHHHHHHHHHhhhhhc
Confidence 45778999999999999999999 899999 699999999999988877666554
No 35
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=94.16 E-value=0.018 Score=38.80 Aligned_cols=19 Identities=42% Similarity=1.114 Sum_probs=17.1
Q ss_pred CCCcCCCCCCCCCCCccCC
Q 038601 1 MGRKCSHCGNTGHNSRTCS 19 (199)
Q Consensus 1 m~R~CS~Cg~~GHNsRTC~ 19 (199)
+.+.|++||..||+.+.|+
T Consensus 30 lp~~C~~C~~~gH~~~~C~ 48 (49)
T PF14392_consen 30 LPRFCFHCGRIGHSDKECP 48 (49)
T ss_pred cChhhcCCCCcCcCHhHcC
Confidence 3578999999999999997
No 36
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=94.11 E-value=0.079 Score=55.28 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 122 PWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 122 ~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
.||..|=..|+.|.++||+.|...|| ..|.++|+.+|+.+++.|+.+.
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~-~~~~~k~~~ev~~y~~~f~~~~ 873 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIA-SEMEGKTEEEVERYAKVFWERY 873 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHH-HHhcCCCHHHHHHHHHHHHHhh
Confidence 49999999999999999999999999 5999999999998887776553
No 37
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.96 E-value=0.16 Score=36.07 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHh-----C-----------CCChhhhhhhh----cCCCCHHHHHHHHHHHHHHhh
Q 038601 120 GVPWTEEEHRVFLMGLEKL-----G-----------RGDWRGISKNF----VTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~ky-----G-----------kGdWk~IAr~~----V~TRT~~QVrsHaQKYf~rl~ 171 (199)
...||++|.+.|++.|++| + ..-|..|+..+ -+.||+.|++..|+++-....
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~K 73 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAK 73 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3469999999999999987 3 22799998532 126999999998887755443
No 38
>PF15288 zf-CCHC_6: Zinc knuckle
Probab=93.90 E-value=0.03 Score=37.54 Aligned_cols=20 Identities=40% Similarity=0.956 Sum_probs=17.9
Q ss_pred CcCCCCCCCCCCC--ccCCCCC
Q 038601 3 RKCSHCGNTGHNS--RTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNs--RTC~~~~ 22 (199)
+||..||.+||.. ++||-..
T Consensus 2 ~kC~~CG~~GH~~t~k~CP~~~ 23 (40)
T PF15288_consen 2 VKCKNCGAFGHMRTNKRCPMYC 23 (40)
T ss_pred ccccccccccccccCccCCCCC
Confidence 7999999999976 8999875
No 39
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=93.89 E-value=0.027 Score=54.97 Aligned_cols=45 Identities=27% Similarity=0.530 Sum_probs=40.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHH
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsH 162 (199)
|.....|+.-|-.+|.+||++||+ |+..|-++|++=++.+-+-.+
T Consensus 282 RDemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIvey 326 (693)
T KOG3554|consen 282 RDEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEY 326 (693)
T ss_pred hhhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHH
Confidence 567888999999999999999999 999999999999988877653
No 40
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.012 Score=52.43 Aligned_cols=50 Identities=14% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
..||++||..|.++|..| .-.|+.|= .+++.++..|.+.|+|+||..+..
T Consensus 54 ~~~t~~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~v~~~~~~~~~~p~~~~ 103 (335)
T KOG0724|consen 54 PRRTPDSWDKFAEALPLE-KRLEDKIE-EYIGLVFDVNIRESGQKPFPKYGK 103 (335)
T ss_pred cccchhhhhHHHhcCccc-cccchhHH-hhhhhHHHHhhhhccCCCccccCc
Confidence 349999999999999999 45999998 699999999999999999998875
No 41
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=93.63 E-value=1.2 Score=39.99 Aligned_cols=58 Identities=21% Similarity=0.388 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCC-----Chhhhhhhhc---CCCCHHHHHHHHHHHHHHhhhhccCC
Q 038601 120 GVPWTEEEHRVFLMGLEKL----GRG-----DWRGISKNFV---TTRTPTQVASHAQKYFLRQKNLYKRK 177 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~ky----GkG-----dWk~IAr~~V---~TRT~~QVrsHaQKYf~rl~~~~K~k 177 (199)
...|+.||=..||++..+. ..+ .|..||+++- --||+.||+..+.+...+.++.++.+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~ 123 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK 123 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 5789999999999988743 222 6999996333 24999999999988777776655443
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=92.56 E-value=0.3 Score=41.40 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHh---CC---CChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 120 GVPWTEEEHRVFLMGLEKL---GR---GDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~ky---Gk---GdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
.-.||+|||.+|-+.+.+| |. .-+..|++ - -+||+.-|.-||..|..++..
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~-~-L~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGR-A-LNRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHH-H-HcccHHHhcchHHHHHHHHHH
Confidence 4579999999999999988 32 14555552 2 279999999999999886653
No 43
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=92.41 E-value=0.36 Score=35.05 Aligned_cols=46 Identities=26% Similarity=0.407 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------ChhhhhhhhcC----CCCHHHHHHHHHHHH
Q 038601 122 PWTEEEHRVFLMGLEKL---GRG---------DWRGISKNFVT----TRTPTQVASHAQKYF 167 (199)
Q Consensus 122 ~WTeEEh~~FLegL~ky---GkG---------dWk~IAr~~V~----TRT~~QVrsHaQKYf 167 (199)
.||+++++.||+.|.+. |.. .|+.|++.|-. ..|..||++|+...-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk 62 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLK 62 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 49999999999999755 221 58888753332 478899999986543
No 44
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=90.22 E-value=0.23 Score=47.31 Aligned_cols=48 Identities=29% Similarity=0.366 Sum_probs=32.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-------------CChhhhhhhhcC-----CCCHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGR-------------GDWRGISKNFVT-----TRTPTQVASHAQKY 166 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGk-------------GdWk~IAr~~V~-----TRT~~QVrsHaQKY 166 (199)
+....|+++=|..|++||+.|-. |+=+.|| .||. .||.+||.+|.|-.
T Consensus 47 ~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~-~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 47 DGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELIS-DYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHH-HHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHH-HHHHHHhCcccchhHHHHHHHHH
Confidence 44678999999999999998832 2345677 4775 59999999999966
No 45
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=88.30 E-value=1.2 Score=46.93 Aligned_cols=51 Identities=33% Similarity=0.590 Sum_probs=42.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhh-----------hhcCCCCHHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISK-----------NFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr-----------~~V~TRT~~QVrsHaQKYf~ 168 (199)
.++..||+|||+.+|-.+.+||-++|..|-. -|+.+||+.++..|+.--..
T Consensus 924 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 924 NKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred CCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999999943 35668999999988865443
No 46
>smart00343 ZnF_C2HC zinc finger.
Probab=87.55 E-value=0.31 Score=28.55 Aligned_cols=17 Identities=47% Similarity=1.183 Sum_probs=15.7
Q ss_pred cCCCCCCCCCCCccCCC
Q 038601 4 KCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~ 20 (199)
+|..||..||.++.|+.
T Consensus 1 ~C~~CG~~GH~~~~C~~ 17 (26)
T smart00343 1 KCYNCGKEGHIARDCPK 17 (26)
T ss_pred CCccCCCCCcchhhCCc
Confidence 59999999999999984
No 47
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=87.07 E-value=0.62 Score=46.08 Aligned_cols=48 Identities=23% Similarity=0.333 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
.+.+-|+.|||+++|.+.+.+-. -|.-|| .. -.||..||-.|+++-.-
T Consensus 57 i~~tews~eederlLhlakl~p~-qwrtIa-~i-~gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 57 IKKTEWSREEDERLLHLAKLEPT-QWRTIA-DI-MGRTSQQCLERYNNLLD 104 (617)
T ss_pred HhhhhhhhhHHHHHHHHHHhcCC-ccchHH-HH-hhhhHHHHHHHHHHHHH
Confidence 45788999999999999999988 999999 34 46999999999876543
No 48
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=86.54 E-value=0.81 Score=39.01 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhc-----CCCCHHHHHHHHHHHHHHh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFV-----TTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V-----~TRT~~QVrsHaQKYf~rl 170 (199)
+...||+|||.++-+-+..|++..=.+++ .|- -.||+.+|..+|..+..++
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~-afe~~g~~L~rt~aac~fRwNs~vrk~ 59 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLK-AFEEVGDALKRTAAACGFRWNSVVRKQ 59 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHhhhHHHHHhHHHHHHHHH
Confidence 35579999999999999999765545554 232 2699999999997776644
No 49
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=85.94 E-value=1.6 Score=42.62 Aligned_cols=42 Identities=19% Similarity=0.350 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsH 162 (199)
....||.||-.+|-++.+.||+ ++.+|- ..++.|+...+.-+
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK-~F~kIr-q~LP~rsLaSlvqy 227 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGK-DFHKIR-QALPHRSLASLVQY 227 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcc-cHHHHH-HHccCccHHHHHHH
Confidence 3457999999999999999999 999998 59999998877643
No 50
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=81.00 E-value=4.4 Score=31.05 Aligned_cols=42 Identities=29% Similarity=0.521 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHHh----CCC---ChhhhhhhhcCCC-----CHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKL----GRG---DWRGISKNFVTTR-----TPTQVASH 162 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~ky----GkG---dWk~IAr~~V~TR-----T~~QVrsH 162 (199)
...||+|+|..+|+||..| |.. ||.... ++|... |..|+..-
T Consensus 4 qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~-~~vk~~l~~~~s~~Ql~~K 57 (98)
T PF04504_consen 4 QRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFY-DFVKGSLSFDVSKNQLYDK 57 (98)
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHH-HHHHHHccCCCCHHHHHHH
Confidence 3569999999999999988 632 777766 465543 66776543
No 51
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=76.80 E-value=3.2 Score=41.46 Aligned_cols=50 Identities=24% Similarity=0.423 Sum_probs=43.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
......+||.+|=++|-.++...|. +...|+ +..+.|+..||+. ||-++-
T Consensus 405 k~~~~~~w~~se~e~fyka~~~~gs-~~slis-~l~p~R~rk~iK~---K~~~eE 454 (584)
T KOG2009|consen 405 KKLETDKWDASETELFYKALSERGS-DFSLIS-NLFPLRDRKQIKA---KFKKEE 454 (584)
T ss_pred CccccCcccchhhHHhhhHHhhhcc-cccccc-cccccccHHHHHH---HHhhhh
Confidence 3456789999999999999999999 999999 6999999999985 665544
No 52
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=74.85 E-value=9.3 Score=32.02 Aligned_cols=54 Identities=11% Similarity=0.297 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--ChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhhcc
Q 038601 121 VPWTEEEHRVFLMGLEKLGRG--DWRGISKNFVTTRTPTQVASHAQKYFLRQKNLYK 175 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkG--dWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~~~K 175 (199)
--++..+...||.+|-.||-+ +|+-+.+ -+..+|..+++.++-=|+.++.-...
T Consensus 39 lGFn~rQR~~Fln~vMR~G~~~f~~~w~~~-~Lr~Ks~~ei~aY~~LFm~HL~E~~~ 94 (145)
T PF06461_consen 39 LGFNPRQRKAFLNAVMRYGMGAFDWKWFVP-RLRGKSEKEIRAYGSLFMRHLCEPGT 94 (145)
T ss_pred eccCHHHHHHHHHHHHHHCcCcccchHHhh-hhccccHHHHHHHHHHHHHHhcCCCc
Confidence 348889999999999999987 8999884 89999999999999988888885443
No 53
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=74.51 E-value=1.8 Score=37.54 Aligned_cols=18 Identities=56% Similarity=1.211 Sum_probs=15.7
Q ss_pred CCcCCCCCCCCCCCccCC
Q 038601 2 GRKCSHCGNTGHNSRTCS 19 (199)
Q Consensus 2 ~R~CS~Cg~~GHNsRTC~ 19 (199)
.-+|.+||-+||=+|-|+
T Consensus 97 ~~~C~~Cg~~GH~~~dC~ 114 (190)
T COG5082 97 PKKCYNCGETGHLSRDCN 114 (190)
T ss_pred ccccccccccCccccccC
Confidence 358999999999999994
No 54
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=73.46 E-value=19 Score=33.87 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh-CC--CChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKL-GR--GDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~ky-Gk--GdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
....||..|.+.+|.+|+-. |. =|-..|++ .+.+|+..||++.-|+.-.
T Consensus 20 gp~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~-~l~~Rs~aEI~~fl~~LK~ 71 (344)
T PF11035_consen 20 GPAAWSAREKRQLLRLLQARRGQPEPDAAELAK-ELPGRSEAEIRDFLQQLKG 71 (344)
T ss_pred CcccCcHHHHHHHHHHHHHhcCCCCcCHHHHHh-hccCcCHHHHHHHHHHHHH
Confidence 35789999999999999966 32 15557784 8999999999987665533
No 55
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=71.92 E-value=4.9 Score=35.05 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC--CCChhhhhh----hhcCCCCHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLG--RGDWRGISK----NFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyG--kGdWk~IAr----~~V~TRT~~QVrsHaQKY 166 (199)
..+.+||.+|+++|........ ...|.+|=. -|-.+||+.+...||+--
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm 125 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM 125 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence 4578999999999988654432 235555521 477789999999999953
No 56
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=71.57 E-value=8.7 Score=37.79 Aligned_cols=54 Identities=6% Similarity=-0.082 Sum_probs=46.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
...+-...||.+|..+++++|++||. +..-|+ ..|+..+..|+.+-...|-+++
T Consensus 364 s~c~~n~~~~T~~~la~v~~I~~~~~-~~~pl~-wrik~t~cmee~e~l~~~~Rr~ 417 (534)
T KOG1194|consen 364 STCRMNRCFDTPAALALIDNIKRKHH-MCVPLV-WRVKQTKCMEENEILNEEARRQ 417 (534)
T ss_pred hhhhhccccCcHHHHHHHHHHHHhcc-Ccchhh-hHhcCcchhhHHHHHHHHHHHH
Confidence 33455689999999999999999999 999999 6999999999998777776554
No 57
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=70.36 E-value=2.6 Score=45.43 Aligned_cols=28 Identities=32% Similarity=0.757 Sum_probs=26.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGI 146 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~I 146 (199)
...-|..|||..||.||-+||.|.|..|
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~I 1159 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAI 1159 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHh
Confidence 5778999999999999999999999998
No 58
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=67.59 E-value=3.6 Score=24.39 Aligned_cols=20 Identities=25% Similarity=0.748 Sum_probs=15.2
Q ss_pred CCCcCCCCCCC-CCCCccCCC
Q 038601 1 MGRKCSHCGNT-GHNSRTCSS 20 (199)
Q Consensus 1 m~R~CS~Cg~~-GHNsRTC~~ 20 (199)
|.+.|.+||.. --..+-|+.
T Consensus 1 m~~~Cp~Cg~~~~~~~~fC~~ 21 (26)
T PF13248_consen 1 MEMFCPNCGAEIDPDAKFCPN 21 (26)
T ss_pred CcCCCcccCCcCCcccccChh
Confidence 88999999984 345667775
No 59
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.55 E-value=3.5 Score=35.38 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGIS 147 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IA 147 (199)
....|-.+-|..||.|+-+||.++|..|.
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~ 30 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQ 30 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHh
Confidence 34579999999999999999999999996
No 60
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=64.03 E-value=17 Score=29.88 Aligned_cols=48 Identities=27% Similarity=0.386 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCC---CCHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTT---RTPTQVASHAQKY 166 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~T---RT~~QVrsHaQKY 166 (199)
+...+=|++|.......|++||. |++.+|++.=-+ .|+.|++....+|
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 56777899999999999999998 999999732212 7999999877766
No 61
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=63.76 E-value=11 Score=39.40 Aligned_cols=50 Identities=30% Similarity=0.511 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
..||+.+=..|+.|-++||+.|-..||+ -|-. |+..|..++.-+|-++..
T Consensus 796 t~w~k~df~~fi~a~eKygr~di~~ia~-~~e~-~~eev~~y~rvfwer~~e 845 (971)
T KOG0385|consen 796 TNWTKRDFNQFIKANEKYGRDDIENIAA-EVEG-TPEEVGEYARVFWERLEE 845 (971)
T ss_pred cchhhhhHHHHHHHhhccCcchhhhhHH-hhcC-CHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999995 6666 999999988877776653
No 62
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=59.57 E-value=5.8 Score=27.21 Aligned_cols=20 Identities=35% Similarity=0.913 Sum_probs=15.7
Q ss_pred CcCCCCC-CCCCCCccCCCCC
Q 038601 3 RKCSHCG-NTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg-~~GHNsRTC~~~~ 22 (199)
|||.+|| .||+-+--|.+..
T Consensus 12 rkCp~CGt~NG~R~~~CKN~~ 32 (44)
T PF14952_consen 12 RKCPKCGTYNGTRGLSCKNKS 32 (44)
T ss_pred ccCCcCcCccCcccccccCCc
Confidence 8999999 4788776787743
No 63
>smart00595 MADF subfamily of SANT domain.
Probab=53.05 E-value=24 Score=25.14 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=29.8
Q ss_pred ChhhhhhhhcCCCCHHHHHHHHHHHH---HHh-hhhccCCCC---CCccccchhhHHHH
Q 038601 142 DWRGISKNFVTTRTPTQVASHAQKYF---LRQ-KNLYKRKRR---PSLFDVMPWAWFLL 193 (199)
Q Consensus 142 dWk~IAr~~V~TRT~~QVrsHaQKYf---~rl-~~~~K~krr---~Sl~Di~~~~~~~~ 193 (199)
.|..|| .-++. |+.+|+.+|..-- .+. .+....+.. .+....-.+|.|+-
T Consensus 29 aW~~Ia-~~l~~-~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~~~w~~~~~m~FL~ 85 (89)
T smart00595 29 AWEEIA-EELGL-SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKKSKWEYFDRLSFLR 85 (89)
T ss_pred HHHHHH-HHHCc-CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCchhhHhhhhHH
Confidence 799999 47777 9999998886542 222 222211211 34455556666664
No 64
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=52.51 E-value=27 Score=25.27 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=20.6
Q ss_pred CChhhhhhhhcCC---CC--HHHHHHHHHHHHHH
Q 038601 141 GDWRGISKNFVTT---RT--PTQVASHAQKYFLR 169 (199)
Q Consensus 141 GdWk~IAr~~V~T---RT--~~QVrsHaQKYf~r 169 (199)
++|..||+ .++- -+ ..+++.++.+|+..
T Consensus 58 ~~W~~va~-~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 58 KKWREVAR-KLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp TTHHHHHH-HTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred chHHHHHH-HhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 48999996 5543 22 47899999999764
No 65
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=49.23 E-value=53 Score=24.11 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=22.3
Q ss_pred CChhhhhhhhcCCC-----CHHHHHHHHHHHHHHhh
Q 038601 141 GDWRGISKNFVTTR-----TPTQVASHAQKYFLRQK 171 (199)
Q Consensus 141 GdWk~IAr~~V~TR-----T~~QVrsHaQKYf~rl~ 171 (199)
..|..||+ .++-. ...+++.++++|.....
T Consensus 54 ~~W~~Va~-~lg~~~~~~~~~~~lk~~Y~k~L~~yE 88 (93)
T smart00501 54 KKWKEIAR-ELGIPDTSTSAASSLRKHYERYLLPFE 88 (93)
T ss_pred CCHHHHHH-HhCCCcccchHHHHHHHHHHHHhHHHH
Confidence 58999996 65532 36788999999977654
No 66
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=48.24 E-value=9.4 Score=23.08 Aligned_cols=10 Identities=40% Similarity=1.149 Sum_probs=7.9
Q ss_pred CCcCCCCCCC
Q 038601 2 GRKCSHCGNT 11 (199)
Q Consensus 2 ~R~CS~Cg~~ 11 (199)
++.|.|||+.
T Consensus 14 ~~~Cp~CG~~ 23 (26)
T PF10571_consen 14 AKFCPHCGYD 23 (26)
T ss_pred cCcCCCCCCC
Confidence 4789999973
No 67
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=46.43 E-value=48 Score=21.63 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHH
Q 038601 126 EEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQK 165 (199)
Q Consensus 126 EEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQK 165 (199)
+-|.++|..|+.-|+-.|..||+ .++ =|+..|..+.++
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~-~lg-lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAE-ELG-LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHH-HHT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHH-HHC-cCHHHHHHHHHH
Confidence 56889999999999999999994 665 477777777665
No 68
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=45.98 E-value=11 Score=32.85 Aligned_cols=17 Identities=41% Similarity=1.030 Sum_probs=16.2
Q ss_pred CcCCCCCCCCCCCccCC
Q 038601 3 RKCSHCGNTGHNSRTCS 19 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~ 19 (199)
++|--||++||-.|-||
T Consensus 61 ~~C~nCg~~GH~~~DCP 77 (190)
T COG5082 61 PVCFNCGQNGHLRRDCP 77 (190)
T ss_pred cccchhcccCcccccCC
Confidence 68999999999999999
No 69
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=43.37 E-value=80 Score=20.42 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 126 EEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 126 EEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
++++..+...-..|. .|++||+ .+ ..|+..|+.+.++=.
T Consensus 13 ~~~r~i~~l~~~~g~-s~~eIa~-~l-~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 13 ERQREIFLLRYFQGM-SYAEIAE-IL-GISESTVKRRLRRAR 51 (54)
T ss_dssp HHHHHHHHHHHTS----HHHHHH-HC-TS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CHHHHHH-HH-CcCHHHHHHHHHHHH
Confidence 344444455555566 9999994 55 589999988766533
No 70
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=42.62 E-value=16 Score=28.97 Aligned_cols=20 Identities=50% Similarity=1.069 Sum_probs=15.4
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
+.|..|+..||.++.|+...
T Consensus 78 ~~C~~Cg~~GH~~~~C~~~~ 97 (148)
T PTZ00368 78 RSCYNCGQTGHISRECPNRA 97 (148)
T ss_pred cccCcCCCCCcccccCCCcc
Confidence 46888888888888888743
No 71
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=41.07 E-value=12 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=9.3
Q ss_pred CCCCCCCHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLM 133 (199)
Q Consensus 118 kk~~~WTeEEh~~FLe 133 (199)
...+.||+|+|+.|+.
T Consensus 45 n~~GiWT~eDD~~L~~ 60 (87)
T PF11626_consen 45 NMPGIWTPEDDEMLRS 60 (87)
T ss_dssp T-TT---HHHHHHHTS
T ss_pred CCCCCcCHHHHHHHHc
Confidence 4467899999999843
No 72
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=40.72 E-value=49 Score=26.37 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 125 EEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 125 eEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
++.|.++|..|++=|+-.|..||+ -+ +-++..|+.+.++-
T Consensus 8 D~~D~~Il~~Lq~d~R~s~~eiA~-~l-glS~~tV~~Ri~rL 47 (153)
T PRK11179 8 DNLDRGILEALMENARTPYAELAK-QF-GVSPGTIHVRVEKM 47 (153)
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHH-HH-CcCHHHHHHHHHHH
Confidence 467999999999999999999995 55 46888888887765
No 73
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=39.01 E-value=20 Score=28.48 Aligned_cols=20 Identities=50% Similarity=1.042 Sum_probs=14.6
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
+.|..|+..||-++.||...
T Consensus 53 ~~C~~Cg~~GH~~~~Cp~~~ 72 (148)
T PTZ00368 53 RSCYNCGKTGHLSRECPEAP 72 (148)
T ss_pred cccCCCCCcCcCcccCCCcc
Confidence 45777888888888887643
No 74
>PHA00442 host recBCD nuclease inhibitor
Probab=38.69 E-value=31 Score=24.93 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHhCCCChhhhh
Q 038601 124 TEEEHRVFLMGLEKLGRGDWRGIS 147 (199)
Q Consensus 124 TeEEh~~FLegL~kyGkGdWk~IA 147 (199)
+-|-+..||++|+-.|--+|.++.
T Consensus 24 sLek~~~~L~~Lea~GVDNW~Gy~ 47 (59)
T PHA00442 24 SLEKDNEFLKALRACGVDNWDGYM 47 (59)
T ss_pred HHHHhhHHHHHHHHcCCcchhhHH
Confidence 446678899999999999999997
No 75
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=38.13 E-value=33 Score=23.07 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=31.4
Q ss_pred HHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 129 RVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 129 ~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
+++-+|++..|..++.-|. .+.+|++.|.+.=.+.|.....
T Consensus 4 ~~l~~a~~~~g~de~~li~--Il~~rs~~ql~~i~~~Y~~~~g 44 (66)
T PF00191_consen 4 ELLHAALKGWGTDEDVLIE--ILCTRSPAQLRAIKQAYKKKYG 44 (66)
T ss_dssp HHHHHHHSSSSSTHHHHHH--HHHHSTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCCCCChhHhhh--HHhhhcccccceeehhhhhhhH
Confidence 4788889888874555443 8889999999988888866554
No 76
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=37.60 E-value=31 Score=31.84 Aligned_cols=28 Identities=36% Similarity=0.568 Sum_probs=25.0
Q ss_pred CccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 038601 113 PTQDRKKGVPWTEEEHRVFLMGLEKLGR 140 (199)
Q Consensus 113 ~~~~rkk~~~WTeEEh~~FLegL~kyGk 140 (199)
|.|-.....||=..|+..|++-|+++|.
T Consensus 274 PyQv~D~~RpwI~~E~~~F~~~L~~~~~ 301 (303)
T PF10561_consen 274 PYQVSDPMRPWIGKEEKKFVKLLKKLGA 301 (303)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHhCC
Confidence 5566788899999999999999999985
No 77
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=36.32 E-value=49 Score=32.16 Aligned_cols=51 Identities=12% Similarity=0.172 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhh----cCC-CCHHHHHHHHHHHHHHhh
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNF----VTT-RTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~----V~T-RT~~QVrsHaQKYf~rl~ 171 (199)
...||.||-+-|.+..++|.- +|=-||..| .++ ||....+.++-..-.++.
T Consensus 130 dn~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~ 185 (445)
T KOG2656|consen 130 DNSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLL 185 (445)
T ss_pred cccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHH
Confidence 356999999999999999987 888888543 454 999999997654444443
No 78
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=33.32 E-value=85 Score=22.95 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 125 EEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 125 eEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
++.|.++|..|++.|.-.|..||+ .+ +-++..|+.+.++.
T Consensus 2 d~~D~~il~~L~~~~~~~~~~la~-~l-~~s~~tv~~~l~~L 41 (108)
T smart00344 2 DEIDRKILEELQKDARISLAELAK-KV-GLSPSTVHNRVKRL 41 (108)
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHH-HH-CcCHHHHHHHHHHH
Confidence 367899999999999889999995 55 56777787766654
No 79
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=33.30 E-value=69 Score=25.89 Aligned_cols=41 Identities=27% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 125 EEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 125 eEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
+|-|.++|.+|++=|+-.|..||+ -++ =++..|+.|.++--
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~-~lg-lS~~tv~~Ri~rL~ 53 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSK-RVG-LSPTPCLERVRRLE 53 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHH-HHC-cCHHHHHHHHHHHH
Confidence 677999999999999999999995 554 57777877777653
No 80
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=31.75 E-value=17 Score=23.72 Aligned_cols=8 Identities=75% Similarity=1.755 Sum_probs=3.9
Q ss_pred cCCCCCCC
Q 038601 4 KCSHCGNT 11 (199)
Q Consensus 4 ~CS~Cg~~ 11 (199)
||.+|||.
T Consensus 8 kC~~CGni 15 (36)
T PF06397_consen 8 KCEHCGNI 15 (36)
T ss_dssp E-TTT--E
T ss_pred EccCCCCE
Confidence 78899874
No 81
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=31.49 E-value=24 Score=22.62 Aligned_cols=19 Identities=32% Similarity=0.842 Sum_probs=17.0
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
..|--|+..||--+.||..
T Consensus 9 Y~C~~C~~~GH~i~dCP~~ 27 (32)
T PF13696_consen 9 YVCHRCGQKGHWIQDCPTN 27 (32)
T ss_pred CEeecCCCCCccHhHCCCC
Confidence 4699999999999999983
No 82
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=31.48 E-value=1.5e+02 Score=21.31 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 122 PWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 122 ~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
..++.|...|..- -..|. .+..||+ .++. |+..|+.+.++-..++.
T Consensus 110 ~L~~~~~~ii~~~-~~~g~-s~~eIA~-~l~~-s~~~v~~~~~~~~~kl~ 155 (158)
T TIGR02937 110 KLPEREREVLVLR-YLEGL-SYKEIAE-ILGI-SVGTVKRRLKRARKKLR 155 (158)
T ss_pred hCCHHHHHHHhhH-HhcCC-CHHHHHH-HHCC-CHHHHHHHHHHHHHHHH
Confidence 3455665555332 22355 9999994 7776 77778777766655554
No 83
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=31.29 E-value=22 Score=22.50 Aligned_cols=10 Identities=60% Similarity=1.524 Sum_probs=8.2
Q ss_pred CcCCCCCCCC
Q 038601 3 RKCSHCGNTG 12 (199)
Q Consensus 3 R~CS~Cg~~G 12 (199)
++|+.|+++|
T Consensus 4 ~~C~~C~~~~ 13 (33)
T PF08792_consen 4 KKCSKCGGNG 13 (33)
T ss_pred eEcCCCCCCe
Confidence 6789998876
No 84
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=30.65 E-value=54 Score=22.42 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=21.9
Q ss_pred ChhhhhhhhcCC-CCHHHHHHHHHHHHHHhhhh
Q 038601 142 DWRGISKNFVTT-RTPTQVASHAQKYFLRQKNL 173 (199)
Q Consensus 142 dWk~IAr~~V~T-RT~~QVrsHaQKYf~rl~~~ 173 (199)
-|..||. .++. -++.+|+.+|+.......+.
T Consensus 28 aw~~Ia~-~l~~~~~~~~~~~~w~~Lr~~y~~~ 59 (85)
T PF10545_consen 28 AWQEIAR-ELGKEFSVDDCKKRWKNLRDRYRRE 59 (85)
T ss_pred HHHHHHH-HHccchhHHHHHHHHHHHHHHHHHH
Confidence 7999995 6663 57888999888765544443
No 85
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=29.31 E-value=32 Score=30.37 Aligned_cols=20 Identities=40% Similarity=1.097 Sum_probs=16.6
Q ss_pred CcCCCC-----CCCCCCCccCCCCC
Q 038601 3 RKCSHC-----GNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~C-----g~~GHNsRTC~~~~ 22 (199)
..|.+| |.-||.-|||....
T Consensus 99 ~~C~~C~EVHVG~~GH~irtC~g~k 123 (204)
T PF05634_consen 99 KACGYCPEVHVGPVGHKIRTCGGFK 123 (204)
T ss_pred eecCCCCCeEECCCcccccccCCCC
Confidence 468888 67899999998764
No 86
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=28.62 E-value=36 Score=22.86 Aligned_cols=18 Identities=33% Similarity=0.986 Sum_probs=16.8
Q ss_pred CcCCCCCCCCCCCccCCC
Q 038601 3 RKCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~ 20 (199)
..|-.|+..||=..-|++
T Consensus 5 ~~CqkC~~~GH~tyeC~~ 22 (42)
T PF13917_consen 5 VRCQKCGQKGHWTYECPN 22 (42)
T ss_pred CcCcccCCCCcchhhCCC
Confidence 679999999999999995
No 87
>KOG4400 consensus E3 ubiquitin ligase interacting with arginine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.19 E-value=30 Score=30.08 Aligned_cols=18 Identities=44% Similarity=0.999 Sum_probs=15.9
Q ss_pred cCCCCCCCCCCCccCCCC
Q 038601 4 KCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~~ 21 (199)
+|-.||+.||=++-|+..
T Consensus 145 ~Cy~Cg~~GH~s~~C~~~ 162 (261)
T KOG4400|consen 145 KCYSCGEQGHISDDCPEN 162 (261)
T ss_pred ccCCCCcCCcchhhCCCC
Confidence 599999999999999953
No 88
>PF02509 Rota_NS35: Rotavirus non-structural protein 35; InterPro: IPR003668 Rotavirus non-structural protein 2 (NSP2) is a basic protein which possesses RNA-binding activity and is essential for genome replication []. It may also be important for viral RNA packaging.; GO: 0003723 RNA binding, 0019079 viral genome replication; PDB: 2GU0_B 2R8F_A 2R7P_A 2R7C_A 1L9V_A 2R7J_A.
Probab=26.03 E-value=41 Score=31.27 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHH---------HhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhhccCCCCCCcccc
Q 038601 120 GVPWTEEEHRVFLMGLE---------KLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKNLYKRKRRPSLFDV 185 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~---------kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~~~K~krr~Sl~Di 185 (199)
..|=.+.+.+.|..-|+ -+|+|.|+-+- -.||.+||...|...++.+|.++-.+..++
T Consensus 194 ~~pi~d~~~kelvAelrwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~f~~l 260 (316)
T PF02509_consen 194 DTPISDSNVKELVAELRWQYNKFAVITHGKGHYRVVK--------YSSVANHADRVYATFKSNKKTGSQFSFNLL 260 (316)
T ss_dssp SS---HHHHHHHHHHHHHHTTTEEEEESSSSCEEEEE--------GGGHHHHHHHHHHHHCTTCCTT-------T
T ss_pred CCCCchHHHHHHHHHHHHhhcceEEEeccCceEEEEe--------hHHhhhhHHHHHHHHhcccccCCccccccc
Confidence 45666677677777666 34899999876 268999999999999988887665554443
No 89
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=25.73 E-value=37 Score=33.82 Aligned_cols=19 Identities=37% Similarity=0.749 Sum_probs=17.1
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
+.|-+||-.||+++-|+..
T Consensus 286 n~c~~cg~~gH~~~dc~~~ 304 (554)
T KOG0119|consen 286 NVCKICGPLGHISIDCKVN 304 (554)
T ss_pred ccccccCCcccccccCCCc
Confidence 4899999999999999875
No 90
>PF06170 DUF983: Protein of unknown function (DUF983); InterPro: IPR009325 This family consists of several bacterial proteins of unknown function.
Probab=24.95 E-value=32 Score=26.01 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=9.2
Q ss_pred CCCcCCCCCCCCC
Q 038601 1 MGRKCSHCGNTGH 13 (199)
Q Consensus 1 m~R~CS~Cg~~GH 13 (199)
|.-+|++||..=+
T Consensus 7 ~~~~C~~CG~d~~ 19 (86)
T PF06170_consen 7 VAPRCPHCGLDYS 19 (86)
T ss_pred CCCcccccCCccc
Confidence 4568999987543
No 91
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=24.18 E-value=48 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.756 Sum_probs=12.4
Q ss_pred cCCCCCCCCCCCc-------cCCCC
Q 038601 4 KCSHCGNTGHNSR-------TCSSY 21 (199)
Q Consensus 4 ~CS~Cg~~GHNsR-------TC~~~ 21 (199)
+| ||.+|.... |||+.
T Consensus 42 ~C--CG~~~~~d~~~~~~~~~C~~~ 64 (84)
T cd03151 42 DC--CGKGNLTALLSLLSTDLCPKK 64 (84)
T ss_pred CC--CCCCCCcchHHHHHhCCCCCc
Confidence 67 999998764 88763
No 92
>CHL00112 rpl28 ribosomal protein L28; Provisional
Probab=23.85 E-value=36 Score=24.57 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.6
Q ss_pred CCCcCCCCCCC
Q 038601 1 MGRKCSHCGNT 11 (199)
Q Consensus 1 m~R~CS~Cg~~ 11 (199)
|+|+|--||.-
T Consensus 1 Msr~C~i~GK~ 11 (63)
T CHL00112 1 MSKKCQLTGKK 11 (63)
T ss_pred CCCeeccCCCc
Confidence 89999999964
No 93
>PLN00111 accumulation of photosystem one; Provisional
Probab=22.94 E-value=46 Score=32.05 Aligned_cols=21 Identities=38% Similarity=0.876 Sum_probs=16.9
Q ss_pred CcCCCC-----CCCCCCCccCCCCCC
Q 038601 3 RKCSHC-----GNTGHNSRTCSSYDN 23 (199)
Q Consensus 3 R~CS~C-----g~~GHNsRTC~~~~~ 23 (199)
..|.+| |+-||.-|||.....
T Consensus 121 ~~C~~C~EVHVG~~GH~irtC~g~k~ 146 (399)
T PLN00111 121 HACKFCSEVHVGKVGHLIRTCRGPGS 146 (399)
T ss_pred eecCcCCceeECCCCccccccCCccc
Confidence 468888 679999999987653
No 94
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=1.6e+02 Score=27.75 Aligned_cols=45 Identities=22% Similarity=0.218 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 125 EEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 125 eEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
+-+-..+-.+++..|...|-.|- .+-|||+.|++.--|-|.....
T Consensus 91 ~~DA~~l~~amkg~gtde~vlIE--IlcTRT~~el~~i~~aY~~~y~ 135 (321)
T KOG0819|consen 91 EYDAKELKKAMKGLGTDEKVLIE--ILCTRTNEELRAIRQAYQELYK 135 (321)
T ss_pred HhHHHHHHHHHhccCcchhhhee--eeccCCHHHHHHHHHHHHHHHc
Confidence 34556777888899986776663 8889999999988888877665
No 95
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.71 E-value=40 Score=21.41 Aligned_cols=8 Identities=38% Similarity=1.435 Sum_probs=5.9
Q ss_pred cCCCCCCC
Q 038601 4 KCSHCGNT 11 (199)
Q Consensus 4 ~CS~Cg~~ 11 (199)
||++|+|.
T Consensus 27 rC~~C~~~ 34 (37)
T PF13719_consen 27 RCPKCGHV 34 (37)
T ss_pred ECCCCCcE
Confidence 68888763
No 96
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=21.63 E-value=69 Score=23.62 Aligned_cols=24 Identities=38% Similarity=0.715 Sum_probs=16.9
Q ss_pred HHHHHHHHH-HHHHhCCCChhhhhhhhcC
Q 038601 125 EEEHRVFLM-GLEKLGRGDWRGISKNFVT 152 (199)
Q Consensus 125 eEEh~~FLe-gL~kyGkGdWk~IAr~~V~ 152 (199)
.||=+++|. + ..|+ ||+..|+ .++
T Consensus 2 ~~~v~~ll~~~--nlG~-dW~~LA~-~LG 26 (77)
T cd08311 2 QEEVEKLLESG--RPGR-DWRSLAG-ELG 26 (77)
T ss_pred hHHHHHHHhCC--CCcc-CHHHHHH-HcC
Confidence 466666664 3 5677 9999995 666
No 97
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=21.48 E-value=78 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHhCCCChhhhhhhhcC
Q 038601 124 TEEEHRVFLMGLEKLGRGDWRGISKNFVT 152 (199)
Q Consensus 124 TeEEh~~FLegL~kyGkGdWk~IAr~~V~ 152 (199)
..+.|++|...|+.-.- .++-|| +|++
T Consensus 17 ~~~~~d~F~~~L~~s~D-~F~vIa-eyfG 43 (49)
T PF12451_consen 17 SADQHDLFFKQLEESED-RFSVIA-EYFG 43 (49)
T ss_pred HhhcHHHHHHHHHhCCC-CchhHH-HHHc
Confidence 35679999999976655 889999 5876
No 98
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=21.30 E-value=29 Score=24.76 Aligned_cols=10 Identities=50% Similarity=1.099 Sum_probs=3.9
Q ss_pred CCCcCCCCCC
Q 038601 1 MGRKCSHCGN 10 (199)
Q Consensus 1 m~R~CS~Cg~ 10 (199)
|+.+|..||.
T Consensus 1 m~v~CP~C~k 10 (57)
T PF03884_consen 1 MTVKCPICGK 10 (57)
T ss_dssp -EEE-TTT--
T ss_pred CcccCCCCCC
Confidence 5666666654
Done!