Query 038601
Match_columns 199
No_of_seqs 200 out of 625
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 4.5E-18 1.5E-22 121.1 8.5 65 118-184 7-71 (72)
2 2elk_A SPCC24B10.08C protein; 99.7 1.7E-16 5.9E-21 109.2 6.6 50 118-168 7-57 (58)
3 2yum_A ZZZ3 protein, zinc fing 99.6 1.8E-16 6.1E-21 113.0 5.9 54 118-172 6-64 (75)
4 1x41_A Transcriptional adaptor 99.6 2.7E-16 9.2E-21 108.6 6.1 51 118-169 6-56 (60)
5 2yus_A SWI/SNF-related matrix- 99.6 3E-16 1E-20 115.0 4.7 52 116-169 14-65 (79)
6 1guu_A C-MYB, MYB proto-oncoge 99.6 1.7E-15 5.8E-20 101.0 6.7 49 119-168 2-50 (52)
7 1gvd_A MYB proto-oncogene prot 99.6 2.3E-15 8E-20 100.5 5.8 48 119-167 2-49 (52)
8 2d9a_A B-MYB, MYB-related prot 99.5 6.6E-15 2.2E-19 100.9 6.2 51 117-168 5-55 (60)
9 1w0t_A Telomeric repeat bindin 99.5 2.5E-14 8.5E-19 96.2 6.9 49 119-168 1-51 (53)
10 1ity_A TRF1; helix-turn-helix, 99.5 3.4E-14 1.1E-18 100.1 7.7 55 115-170 5-61 (69)
11 3sjm_A Telomeric repeat-bindin 99.5 4.6E-14 1.6E-18 99.4 7.1 50 117-167 8-59 (64)
12 2dim_A Cell division cycle 5-l 99.5 3.7E-14 1.3E-18 100.0 6.3 51 117-168 6-56 (70)
13 2din_A Cell division cycle 5-l 99.5 6.4E-14 2.2E-18 97.8 6.8 51 119-172 8-58 (66)
14 2eqr_A N-COR1, N-COR, nuclear 99.5 1.5E-13 5.1E-18 95.5 7.6 48 114-163 6-53 (61)
15 2cqr_A RSGI RUH-043, DNAJ homo 99.4 3.8E-13 1.3E-17 97.5 6.9 53 116-169 14-69 (73)
16 2iw5_B Protein corest, REST co 99.4 1.5E-13 5.2E-18 118.8 5.6 57 112-170 125-181 (235)
17 2ltp_A Nuclear receptor corepr 99.1 5E-14 1.7E-18 104.5 0.0 51 119-171 15-65 (89)
18 1gv2_A C-MYB, MYB proto-oncoge 99.3 1E-12 3.4E-17 98.0 5.8 48 119-167 3-50 (105)
19 2k9n_A MYB24; R2R3 domain, DNA 99.3 3.7E-12 1.3E-16 95.9 7.3 51 119-171 52-102 (107)
20 2xag_B REST corepressor 1; ami 99.3 1.3E-12 4.4E-17 122.5 5.8 56 114-171 374-429 (482)
21 3osg_A MYB21; transcription-DN 99.3 2.9E-12 1E-16 99.1 6.8 52 115-168 6-57 (126)
22 2k9n_A MYB24; R2R3 domain, DNA 99.3 2.2E-12 7.7E-17 97.1 5.9 47 121-168 2-48 (107)
23 2ckx_A NGTRF1, telomere bindin 99.3 8.9E-12 3E-16 92.3 7.9 51 121-171 1-54 (83)
24 3zqc_A MYB3; transcription-DNA 99.3 4.2E-12 1.4E-16 98.7 6.0 48 120-168 2-49 (131)
25 1h8a_C AMV V-MYB, MYB transfor 99.3 5.6E-12 1.9E-16 97.3 6.2 49 119-168 26-74 (128)
26 2yqk_A Arginine-glutamic acid 99.3 1.3E-11 4.4E-16 86.5 7.2 46 116-162 5-50 (63)
27 2aje_A Telomere repeat-binding 99.3 1.9E-11 6.6E-16 94.3 8.7 57 115-171 8-67 (105)
28 2cjj_A Radialis; plant develop 99.2 9.8E-12 3.3E-16 93.8 6.6 51 120-171 8-61 (93)
29 1gv2_A C-MYB, MYB proto-oncoge 99.2 8.3E-12 2.8E-16 93.0 6.0 48 118-167 54-101 (105)
30 2llk_A Cyclin-D-binding MYB-li 99.2 1.1E-11 3.9E-16 89.8 6.1 44 118-164 21-64 (73)
31 3osg_A MYB21; transcription-DN 99.2 1.7E-11 5.9E-16 94.8 7.5 53 118-172 60-112 (126)
32 1irz_A ARR10-B; helix-turn-hel 99.2 2.6E-11 9E-16 86.6 7.3 55 116-172 3-62 (64)
33 2roh_A RTBP1, telomere binding 99.2 2.2E-11 7.6E-16 96.2 7.5 57 115-171 26-85 (122)
34 2juh_A Telomere binding protei 99.2 3.2E-11 1.1E-15 95.2 6.7 57 115-171 12-71 (121)
35 3zqc_A MYB3; transcription-DNA 99.2 4.7E-11 1.6E-15 92.7 7.0 52 119-172 53-104 (131)
36 2crg_A Metastasis associated p 99.2 8.4E-11 2.9E-15 84.1 7.4 46 117-163 5-50 (70)
37 1h8a_C AMV V-MYB, MYB transfor 99.2 3E-11 1E-15 93.2 5.2 48 118-167 77-124 (128)
38 1h89_C C-MYB, MYB proto-oncoge 99.1 6.8E-11 2.3E-15 94.0 6.2 49 118-167 56-104 (159)
39 1wgx_A KIAA1903 protein; MYB D 99.1 5.1E-11 1.8E-15 86.8 4.5 46 120-166 8-56 (73)
40 2cqq_A RSGI RUH-037, DNAJ homo 99.1 2.5E-10 8.5E-15 82.4 6.5 48 119-168 7-57 (72)
41 1h89_C C-MYB, MYB proto-oncoge 99.0 1.9E-10 6.4E-15 91.5 4.6 48 117-166 107-154 (159)
42 1x58_A Hypothetical protein 49 98.9 2.4E-09 8.1E-14 76.2 6.2 48 118-166 6-55 (62)
43 4a69_C Nuclear receptor corepr 98.8 3.2E-09 1.1E-13 79.7 5.6 46 116-163 39-84 (94)
44 4eef_G F-HB80.4, designed hema 98.8 5.1E-10 1.8E-14 82.1 0.9 46 118-164 18-66 (74)
45 1ign_A Protein (RAP1); RAP1,ye 98.7 5E-09 1.7E-13 91.3 4.2 51 119-170 7-62 (246)
46 1fex_A TRF2-interacting telome 98.1 2.3E-06 7.8E-11 59.3 4.1 48 120-167 2-57 (59)
47 3hm5_A DNA methyltransferase 1 97.6 0.00017 5.9E-09 54.5 6.8 49 121-171 31-84 (93)
48 1ofc_X ISWI protein; nuclear p 97.6 6.2E-05 2.1E-09 67.1 4.8 50 119-168 211-274 (304)
49 1ofc_X ISWI protein; nuclear p 97.5 0.00014 4.8E-09 64.8 7.0 48 122-170 112-159 (304)
50 2xag_B REST corepressor 1; ami 97.5 1.7E-05 5.9E-10 74.5 0.0 42 120-163 189-230 (482)
51 1ug2_A 2610100B20RIK gene prod 97.3 0.00049 1.7E-08 52.5 6.7 46 120-166 33-80 (95)
52 2ebi_A DNA binding protein GT- 97.0 0.00067 2.3E-08 48.8 4.6 54 118-172 2-68 (86)
53 2lr8_A CAsp8-associated protei 95.9 0.00015 5.1E-09 52.6 0.0 45 120-166 14-60 (70)
54 4b4c_A Chromodomain-helicase-D 96.8 0.0016 5.3E-08 53.1 5.6 54 117-170 4-60 (211)
55 4b4c_A Chromodomain-helicase-D 96.5 0.0025 8.4E-08 51.9 4.9 51 120-171 134-197 (211)
56 4iej_A DNA methyltransferase 1 96.2 0.013 4.6E-07 44.3 6.9 51 121-172 31-85 (93)
57 2xb0_X Chromo domain-containin 95.9 0.0047 1.6E-07 54.1 3.6 28 121-148 169-196 (270)
58 2y9y_A Imitation switch protei 95.6 0.019 6.6E-07 52.5 6.3 48 122-170 125-173 (374)
59 1dsq_A Nucleic acid binding pr 95.0 0.013 4.3E-07 34.2 2.2 21 2-22 2-22 (26)
60 2hzd_A Transcriptional enhance 94.5 0.064 2.2E-06 39.8 5.3 49 118-167 4-72 (82)
61 2y9y_A Imitation switch protei 94.0 0.081 2.8E-06 48.5 6.1 50 119-168 227-290 (374)
62 1ign_A Protein (RAP1); RAP1,ye 93.7 0.11 3.6E-06 45.4 6.0 28 142-170 173-200 (246)
63 1nc8_A Nucleocapsid protein; H 91.4 0.081 2.8E-06 31.3 1.6 20 3-22 7-26 (29)
64 1a6b_B Momulv, zinc finger pro 90.5 0.14 4.7E-06 33.0 2.1 20 3-22 11-30 (40)
65 2a51_A Nucleocapsid protein; s 87.6 0.34 1.2E-05 30.0 2.4 16 4-19 2-17 (39)
66 2bl6_A Nucleocapsid protein P1 87.1 0.25 8.4E-06 30.3 1.5 17 4-20 2-18 (37)
67 1u6p_A GAG polyprotein; MLV, A 86.9 0.31 1E-05 33.4 2.0 20 3-22 24-43 (56)
68 2ihx_A Nucleocapsid (NC) prote 86.6 0.36 1.2E-05 32.7 2.2 19 4-22 32-50 (61)
69 2bl6_A Nucleocapsid protein P1 85.9 0.44 1.5E-05 29.2 2.2 17 4-20 21-37 (37)
70 2ihx_A Nucleocapsid (NC) prote 85.2 0.44 1.5E-05 32.3 2.1 22 1-22 3-24 (61)
71 1a1t_A Nucleocapsid protein; s 84.9 0.46 1.6E-05 31.2 2.1 19 3-21 13-31 (55)
72 2a51_A Nucleocapsid protein; s 84.2 0.52 1.8E-05 29.2 1.9 16 5-20 24-39 (39)
73 2xb0_X Chromo domain-containin 83.5 3.1 0.0001 36.3 7.2 45 120-164 3-50 (270)
74 2ec7_A GAG polyprotein (PR55GA 83.4 0.64 2.2E-05 30.2 2.2 19 3-21 7-25 (49)
75 2ec7_A GAG polyprotein (PR55GA 82.5 0.81 2.8E-05 29.7 2.4 20 3-22 28-47 (49)
76 1a1t_A Nucleocapsid protein; s 80.7 0.75 2.6E-05 30.2 1.8 20 3-22 34-53 (55)
77 1cl4_A Protein (GAG polyprotei 79.7 0.36 1.2E-05 32.3 0.0 21 2-22 1-21 (60)
78 1cl4_A Protein (GAG polyprotei 77.6 1.3 4.5E-05 29.5 2.3 20 3-22 31-50 (60)
79 3nyb_B Protein AIR2; polya RNA 76.1 2.8 9.5E-05 30.4 3.9 21 3-23 47-67 (83)
80 2cqf_A RNA-binding protein LIN 73.0 1.7 5.7E-05 29.6 1.9 19 3-21 30-48 (63)
81 2cqf_A RNA-binding protein LIN 72.8 2.1 7.2E-05 29.1 2.4 18 3-20 8-25 (63)
82 2li8_A Protein LIN-28 homolog 70.7 2 6.7E-05 30.5 1.9 17 4-20 48-64 (74)
83 2li8_A Protein LIN-28 homolog 68.7 2.7 9.3E-05 29.7 2.3 18 3-20 25-42 (74)
84 2lli_A Protein AIR2; RNA surve 68.0 2.8 9.4E-05 31.4 2.3 20 3-22 65-84 (124)
85 3ts2_A Protein LIN-28 homolog 66.7 2.6 8.8E-05 33.2 2.0 19 3-21 98-116 (148)
86 3nyb_B Protein AIR2; polya RNA 64.2 2.4 8.1E-05 30.8 1.2 19 3-21 6-24 (83)
87 2ysa_A Retinoblastoma-binding 59.9 4 0.00014 27.7 1.7 19 3-21 8-26 (55)
88 2li6_A SWI/SNF chromatin-remod 57.7 10 0.00034 28.4 3.8 31 140-171 70-100 (116)
89 2lli_A Protein AIR2; RNA surve 57.3 5.5 0.00019 29.7 2.2 19 3-21 5-23 (124)
90 2lm1_A Lysine-specific demethy 54.6 22 0.00076 25.8 5.2 31 141-172 66-100 (107)
91 2jrz_A Histone demethylase jar 52.6 17 0.00057 27.3 4.2 41 131-172 45-96 (117)
92 2eqy_A RBP2 like, jumonji, at 51.8 31 0.0011 26.0 5.7 35 140-175 63-101 (122)
93 2cxy_A BAF250B subunit, HBAF25 49.4 18 0.0006 27.4 4.0 32 141-173 73-108 (125)
94 1kkx_A Transcription regulator 46.4 14 0.00048 28.2 3.0 31 141-172 70-100 (123)
95 1c20_A DEAD ringer protein; DN 44.6 26 0.00088 26.5 4.2 34 141-175 74-112 (128)
96 2lc3_A E3 ubiquitin-protein li 43.7 69 0.0024 23.8 6.2 51 116-170 9-80 (88)
97 1ig6_A MRF-2, modulator recogn 39.7 14 0.00049 27.0 2.0 30 141-171 55-89 (107)
98 2rq5_A Protein jumonji; develo 38.1 28 0.00097 26.6 3.6 32 140-172 63-99 (121)
99 2jxj_A Histone demethylase jar 38.1 15 0.0005 26.3 1.8 30 141-171 58-91 (96)
100 2juh_A Telomere binding protei 37.1 17 0.00058 28.2 2.1 27 118-145 77-103 (121)
101 2kk0_A AT-rich interactive dom 36.7 33 0.0011 26.7 3.8 32 141-173 86-122 (145)
102 3o2i_A Uncharacterized protein 28.3 33 0.0011 26.5 2.5 26 120-145 48-74 (125)
103 4g0a_A Non-structural protein 27.7 24 0.00081 31.5 1.7 58 120-185 194-260 (317)
104 2gu0_A Nonstructural protein 2 24.5 24 0.00081 31.4 1.1 58 120-185 191-257 (312)
105 3e7l_A Transcriptional regulat 21.8 1.5E+02 0.005 19.1 4.5 27 125-153 18-44 (63)
106 3i4p_A Transcriptional regulat 21.5 82 0.0028 23.8 3.6 39 126-166 3-41 (162)
107 2roh_A RTBP1, telomere binding 21.5 49 0.0017 25.6 2.3 23 118-140 90-113 (122)
108 2e1c_A Putative HTH-type trans 21.4 1.4E+02 0.0047 23.0 4.9 40 125-166 26-65 (171)
109 2jz6_A 50S ribosomal protein L 21.3 34 0.0012 24.7 1.2 11 1-11 6-16 (77)
110 3b73_A PHIH1 repressor-like pr 20.5 1.9E+02 0.0065 21.4 5.3 67 120-190 7-74 (111)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.74 E-value=4.5e-18 Score=121.13 Aligned_cols=65 Identities=37% Similarity=0.551 Sum_probs=60.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhhccCCCCCCccc
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKNLYKRKRRPSLFD 184 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~~~K~krr~Sl~D 184 (199)
.+..+||+|||++|++++++||. +|..|| .+|++||+.||++||++||.+..+....+++++|++
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia-~~~~~Rt~~q~k~r~~~~l~~~~~~g~~~~~~si~s 71 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKIS-KLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQKT 71 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCSCCCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhcCCCCCcccccc
Confidence 45789999999999999999999 999999 599999999999999999999988788899999886
No 2
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.65 E-value=1.7e-16 Score=109.20 Aligned_cols=50 Identities=26% Similarity=0.551 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT-TRTPTQVASHAQKYFL 168 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrsHaQKYf~ 168 (199)
....+||+|||++|+++|++||.++|..|| .+|+ +||+.||+.||++||+
T Consensus 7 ~~~~~WT~eED~~L~~~v~~~G~~~W~~IA-~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 7 GFDENWGADEELLLIDACETLGLGNWADIA-DYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTTTTCHHHHH-HHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHHCCCCCHHHHHHHHHHHcc
Confidence 346689999999999999999988999999 5999 9999999999999986
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=113.05 Aligned_cols=54 Identities=33% Similarity=0.486 Sum_probs=49.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-----CChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGR-----GDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGk-----GdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
....+||+|||++|+++|++||. .+|..|| .+|++||+.||++||++||.++.+
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA-~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIA-DELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHH-HHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHH-HHhCCCCHHHHHHHHHHHHHHHHh
Confidence 44679999999999999999995 6999999 599999999999999999988753
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=2.7e-16 Score=108.56 Aligned_cols=51 Identities=27% Similarity=0.542 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR 169 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~r 169 (199)
..+.+||+|||++|++++++||.++|..|| .+|++||+.||+.||++|+..
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVA-NQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHH-HHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHH-HHhCCCCHHHHHHHHHHHccC
Confidence 456799999999999999999977999999 599999999999999999764
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.61 E-value=3e-16 Score=114.95 Aligned_cols=52 Identities=29% Similarity=0.487 Sum_probs=46.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLR 169 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~r 169 (199)
......+||+|||++||+||++|| ++|..|| ++|++||+.||+.||++|++.
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA-~~v~~RT~~qcr~r~~~~~i~ 65 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVS-EHVGSRTQDECILHFLRLPIE 65 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHH-HHHSSCCHHHHHHHHTTSCCC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHH-HHcCCCCHHHHHHHHHHhccc
Confidence 345578999999999999999999 6999999 599999999999999988553
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.60 E-value=1.7e-15 Score=101.05 Aligned_cols=49 Identities=31% Similarity=0.471 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
+.++||+|||.+|++++++||.++|..|| .+|++||+.||+.||++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIA-NYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHH-HTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHcCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999999999 59999999999999999863
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.58 E-value=2.3e-15 Score=100.52 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
++++||+|||++|++++++||.++|..|| .+|++||+.||+.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHH-HHcCCCCHHHHHHHHHHHc
Confidence 46799999999999999999998999999 5999999999999999885
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=6.6e-15 Score=100.92 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=46.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
..++.+||+|||++|++++++||.++|..|| .+|++||+.||+.||++|+.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHH-HHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHH-HHccCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999977999999 59999999999999998753
No 9
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.52 E-value=2.5e-14 Score=96.17 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC--CCCHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT--TRTPTQVASHAQKYFL 168 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~--TRT~~QVrsHaQKYf~ 168 (199)
+..+||+|||++|++++++||.++|..|| .+++ +||+.||+.+|.+|..
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHH-HHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHcCCCCCCHHHHHHHHHHHHc
Confidence 35799999999999999999988999999 5999 9999999999998853
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.51 E-value=3.4e-14 Score=100.12 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=49.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC--CCCHHHHHHHHHHHHHHh
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT--TRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~--TRT~~QVrsHaQKYf~rl 170 (199)
..+++..+||+|||++|++++++||.++|..|| .+++ +||+.||+.||.+|+...
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia-~~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKIL-LHYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHH-HHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHH-HHcCcCCCCHHHHHHHHHHHcCCC
Confidence 346778899999999999999999988999999 5999 999999999999987643
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.49 E-value=4.6e-14 Score=99.41 Aligned_cols=50 Identities=30% Similarity=0.457 Sum_probs=43.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC--CCCHHHHHHHHHHHH
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT--TRTPTQVASHAQKYF 167 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~--TRT~~QVrsHaQKYf 167 (199)
..++.+||+|||++|++++++||.++|..||+ +++ +||+.||+.+|.++.
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~-~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISK-NYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHH-HSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHh-hcCCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999999999995 765 999999999998874
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.7e-14 Score=99.96 Aligned_cols=51 Identities=18% Similarity=0.445 Sum_probs=46.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
..++.+||+|||++|++++++||.++|..|| .+|++||+.||+.||++|+.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIA-SLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHH-HHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHH-HHhcCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999977999999 59999999999999988854
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=6.4e-14 Score=97.77 Aligned_cols=51 Identities=24% Similarity=0.408 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
+..+||+|||++|++++++||. +|..||+ ++ +||+.||+.||++|+....+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhc
Confidence 3679999999999999999999 9999995 55 59999999999999887654
No 14
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=95.46 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=43.9
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 038601 114 TQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHA 163 (199)
Q Consensus 114 ~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHa 163 (199)
.++|+...+||+||+++|+++|.+||+ +|..|| .+|++||+.||+.||
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia-~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIA-SYLERKSVPDCVLYY 53 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHH-HHCTTSCHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 456788899999999999999999998 999999 699999999998754
No 15
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.41 E-value=3.8e-13 Score=97.54 Aligned_cols=53 Identities=17% Similarity=0.424 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhcCCCCHHHHHHHHHHHHHH
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGR---GDWRGISKNFVTTRTPTQVASHAQKYFLR 169 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGk---GdWk~IAr~~V~TRT~~QVrsHaQKYf~r 169 (199)
......+||.||+.+|++||++||. .+|..|| .+|++||+.||+.||+.+...
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA-~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA-RCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG-GGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHc
Confidence 3456789999999999999999994 3899999 599999999999999977543
No 16
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.41 E-value=1.5e-13 Score=118.83 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=50.7
Q ss_pred CCccCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 112 APTQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 112 ~~~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
.+...++...+||+||+++|++||++||+ ||..|| .+|+|||..||++||++|..++
T Consensus 125 ~pe~~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IA-k~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 125 LPEVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHH-HHHSSCCHHHHHHHHHHTTTTT
T ss_pred CCCCCCccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHh
Confidence 34556678889999999999999999998 999999 5999999999999999886553
No 17
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.06 E-value=5e-14 Score=104.49 Aligned_cols=51 Identities=33% Similarity=0.455 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
..++||+|||++|++++++||. +|..|| .+|++||+.||++||+.|+.++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA-~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIA-RMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 3679999999999999999999 999999 59999999999999999976653
No 18
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.34 E-value=1e-12 Score=98.02 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
+.++||+|||.+|++++++||.++|..|| .+|++||+.||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHH-TTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHh-hhhcCCCHHHHHHHHHhcc
Confidence 36799999999999999999998999999 5999999999999999875
No 19
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.31 E-value=3.7e-12 Score=95.89 Aligned_cols=51 Identities=20% Similarity=0.416 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
+.++||+|||.+|++++++||. +|..|| .+|++||+.||++||..+..+..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~r~~~ 102 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKIS-KFLKNRSDNNIRNRWMMIARHRA 102 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHH-HHHSSSCHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHH-HHCCCCCHHHHHHHHHHHHhhHH
Confidence 4689999999999999999998 999999 59999999999999998877654
No 20
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.31 E-value=1.3e-12 Score=122.52 Aligned_cols=56 Identities=27% Similarity=0.417 Sum_probs=49.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 114 TQDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 114 ~~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
....+...+||+||+++|++||++||+ ||..|| .+|+|||+.||++||++|+.++.
T Consensus 374 e~~~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA-~~VgTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 374 EVIQKCNARWTTEEQLLAVQAIRKYGR-DFQAIS-DVIGNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCCCCCSCCCHHHHHHHHHHHHHHTT-CHHHHH-HHHSSCCHHHHHHHHHHTTTTTT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHhCCCCHHHHHHHHHHHHHHhC
Confidence 344567899999999999999999999 999999 59999999999999998865443
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.31 E-value=2.9e-12 Score=99.12 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=47.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
....++++||+|||++|++++++||. +|..|| .+|++||+.||+.||++|+.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIA-ATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHH-HTCTTCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHhhhcc
Confidence 44567889999999999999999999 999999 59999999999999998864
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.30 E-value=2.2e-12 Score=97.10 Aligned_cols=47 Identities=32% Similarity=0.467 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
++||+|||.+|++++++||.++|..|| .+|++||+.||+.||.+|+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRIS-QLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHH-HHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHh-hhcCCCCHHHHHHHHHHHHc
Confidence 589999999999999999998999999 59999999999999988853
No 23
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=8.9e-12 Score=92.26 Aligned_cols=51 Identities=20% Similarity=0.375 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhh---hcCCCCHHHHHHHHHHHHHHhh
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKN---FVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~---~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
.+||+||++.|++++++||.|+|..|++. ++++||..||+.+|.+++....
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 48999999999999999999999999963 3789999999999999876544
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.27 E-value=4.2e-12 Score=98.67 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=44.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
.++||+|||++|++++++||.++|..|| .+|++||+.||+.||++|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGT-TSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHH-HHHCCCCHHHHHHHHhhccC
Confidence 4689999999999999999988999999 59999999999999998864
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.26 E-value=5.6e-12 Score=97.26 Aligned_cols=49 Identities=22% Similarity=0.415 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
+.++||+|||.+|++++++||.++|..|| .+|++||+.||+.||++|+.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIA-KHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHH-HHSSSCCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHH-HHhcCCcHHHHHHHHHHhcc
Confidence 46799999999999999999988999999 59999999999999988763
No 26
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=86.47 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=40.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHH
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASH 162 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsH 162 (199)
++....+||+||+++|++||.+||+ ||..|++++|++||+.||..+
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~f 50 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPNKETGELITF 50 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTTSCHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCcHHHHHHH
Confidence 3455679999999999999999999 999999547999999999863
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.25 E-value=1.9e-11 Score=94.26 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=49.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHhh
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF---VTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~---V~TRT~~QVrsHaQKYf~rl~ 171 (199)
..+++..+||+||++.|++|+++||.|+|..|++.+ +..||..||+.+|.+++..-.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 356788999999999999999999999999999633 289999999999999876543
No 28
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.25 E-value=9.8e-12 Score=93.84 Aligned_cols=51 Identities=27% Similarity=0.551 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 120 GVPWTEEEHRVFLMGLEKLGR---GDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGk---GdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
..+||+||+++|++||++||. .+|..|| .+|++||+.||+.||++++.+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA-~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVA-RAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHH-HHcCCCCHHHHHHHHHHHHHHHH
Confidence 468999999999999999984 3699999 59999999999999999876654
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.24 E-value=8.3e-12 Score=93.01 Aligned_cols=48 Identities=29% Similarity=0.587 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
.+.++||+|||.+|++++++||. +|..|| .+|++||+.||++||..+.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNSTM 101 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHH-TTCTTCCHHHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHH-HHcCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998 999999 5999999999999998664
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=89.83 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQ 164 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQ 164 (199)
.+.++||+|||++|++++++||. +|..||+ ++ +||+.||++||.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~-~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGA-AL-GRSASSVKDRCR 64 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH-HH-TSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH-Hh-CCCHHHHHHHHH
Confidence 34779999999999999999999 6999995 88 999999999986
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.23 E-value=1.7e-11 Score=94.79 Aligned_cols=53 Identities=23% Similarity=0.425 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
.+.++||+|||++|++++++||. +|..|| .+|++||+.||++||..+..++.-
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIA-KFFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHHHHHHTTC
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHhcCC
Confidence 34679999999999999999997 999999 599999999999999888777653
No 32
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.22 E-value=2.6e-11 Score=86.58 Aligned_cols=55 Identities=35% Similarity=0.517 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC---hhhhhhhhcC--CCCHHHHHHHHHHHHHHhhh
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGD---WRGISKNFVT--TRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGd---Wk~IAr~~V~--TRT~~QVrsHaQKYf~rl~~ 172 (199)
.++.+..||+|+|+.|++|++++|. + |+.|. ++|+ +.|..||+||.|||++++.+
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il-~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKIL-DLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHH-HHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4677899999999999999999994 5 78998 4766 67999999999999999865
No 33
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.22 E-value=2.2e-11 Score=96.19 Aligned_cols=57 Identities=23% Similarity=0.387 Sum_probs=49.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHhh
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF---VTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~---V~TRT~~QVrsHaQKYf~rl~ 171 (199)
..+++..+||+||++.|++|+++||.|+|..|++.+ +..||..||+.+|.+++..-.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 356778899999999999999999999999999643 389999999999999886543
No 34
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.18 E-value=3.2e-11 Score=95.17 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=50.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhh---cCCCCHHHHHHHHHHHHHHhh
Q 038601 115 QDRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNF---VTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 115 ~~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~---V~TRT~~QVrsHaQKYf~rl~ 171 (199)
..+++..+||+||++.|++++++||.|+|..|++.+ +..||..||+++|.++.....
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 356778899999999999999999999999999643 489999999999999887543
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.17 E-value=4.7e-11 Score=92.70 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=47.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
+.++||+|||.+|++++++||. +|..|| .+|++||+.||++||+.++.+...
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIA-KLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHT-TTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHH-HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3679999999999999999998 999999 599999999999999988876553
No 36
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=99.16 E-value=8.4e-11 Score=84.08 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=41.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHA 163 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHa 163 (199)
|+...+||+||+.+|++||.+||+ ||..|++++|++||+.||..++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSSSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCCCCHHHHHHHH
Confidence 456779999999999999999999 9999995479999999999755
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.15 E-value=3e-11 Score=93.20 Aligned_cols=48 Identities=31% Similarity=0.589 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
.+.++||+|||.+|++++++||. +|..|| .+|++||+.||++||..+.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia-~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHG-GGSTTCCHHHHHHHHHTTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHH-HHCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998 999999 5999999999999987553
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.12 E-value=6.8e-11 Score=94.03 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
.+.++||+|||.+|++++++||.++|..|| .+|++||+.||+.||++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia-~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIA-KHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHH-HTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHH-HHcCCCCHHHHHHHHHHHh
Confidence 346899999999999999999988999999 5999999999999998875
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.11 E-value=5.1e-11 Score=86.85 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGR---GDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGk---GdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
...||+||+++|++||..|++ ++|..|| ++|++||+.||+.||+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA-~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVA-AAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHH-HHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 357999999999999999987 4799999 699999999999988765
No 40
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.06 E-value=2.5e-10 Score=82.38 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhhcCCCCHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRG---DWRGISKNFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkG---dWk~IAr~~V~TRT~~QVrsHaQKYf~ 168 (199)
+...||+||+.+|..||.+|+.+ +|..|| .++ +||+.||+.||+++..
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA-~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIA-HEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHH-HHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHh-CCCHHHHHHHHHHHHH
Confidence 35689999999999999999854 699999 588 7999999999987743
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.02 E-value=1.9e-10 Score=91.47 Aligned_cols=48 Identities=29% Similarity=0.578 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
..+..+||+|||.+|++++++||. +|..|| .+|++||+.||++||..+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia-~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRLGN-RWAEIA-KLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHCS-CHHHHH-TTSTTCCHHHHHHHHHTT
T ss_pred cccccCCChHHHHHHHHHHHHHCC-CHHHHH-HHCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998 999999 599999999999998754
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.90 E-value=2.4e-09 Score=76.17 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhhhhh--hhcCCCCHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRGISK--NFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~IAr--~~V~TRT~~QVrsHaQKY 166 (199)
+.+.+||+||++.|++|+++||. .|..|+. .|+..||...+++.|...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHH
Confidence 45779999999999999999999 9999994 288899999999977543
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.84 E-value=3.2e-09 Score=79.75 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 038601 116 DRKKGVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHA 163 (199)
Q Consensus 116 ~rkk~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHa 163 (199)
.++....||+||+++|.+++.+||+ +|..|| ++|++||..||..++
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia-~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA-SFLERKTVAECVLYY 84 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH-HTCTTCCHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH-HHcCCCCHHHHHHHH
Confidence 3456788999999999999999999 999999 699999999998754
No 44
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.83 E-value=5.1e-10 Score=82.09 Aligned_cols=46 Identities=28% Similarity=0.632 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---ChhhhhhhhcCCCCHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRG---DWRGISKNFVTTRTPTQVASHAQ 164 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkG---dWk~IAr~~V~TRT~~QVrsHaQ 164 (199)
....+||.||+++|..||.+|+++ +|..|| ..|++||+.||+.|||
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA-~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVA-QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTG-GGSCSSCHHHHHGGGC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH-HHcCCCCHHHHHHHHH
Confidence 336689999999999999999976 899999 5999999999999886
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.74 E-value=5e-09 Score=91.29 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-----hhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGRGD-----WRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGkGd-----Wk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
+..+||+|||+++|+.+++||..+ |..|| .++++||+.|||+||..|+.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IA-k~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS-HYVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT-TTSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHH-HHcCCCCHHHHHHHHHHHHhhh
Confidence 466999999999999999998853 99999 5999999999999999998664
No 46
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.11 E-value=2.3e-06 Score=59.35 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhhhhcCCCCHHHHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKL--------GRGDWRGISKNFVTTRTPTQVASHAQKYF 167 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~ky--------GkGdWk~IAr~~V~TRT~~QVrsHaQKYf 167 (199)
+.+||+|||..+++-|.+| |..-|+.||+..++.+|-.++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 77799999954799999999999999875
No 47
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.58 E-value=0.00017 Score=54.54 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhc-----CCCCHHHHHHHHHHHHHHhh
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKNFV-----TTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V-----~TRT~~QVrsHaQKYf~rl~ 171 (199)
.+||.||...|++.+++||- .|..|+. .. +.||..++++++-..-.++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~D-Ry~~~~~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHD-RYDHQQFKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHH-HSCTTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-Ceeeehh-hhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999999999998 9999995 66 58999999998765555554
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.55 E-value=6.2e-05 Score=67.11 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hhcCCCCHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGR---GDWRGISK-----------NFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGk---GdWk~IAr-----------~~V~TRT~~QVrsHaQKYf~ 168 (199)
++..||+|||+.||-+|.+||. |+|..|-. -|+.+|||.++..|++--..
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 5668999999999999999999 99999952 38889999999999975443
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.54 E-value=0.00014 Score=64.82 Aligned_cols=48 Identities=29% Similarity=0.499 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 122 PWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 122 ~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
.||..|-..|+.|+.+||+.+|..|| ..|+++|+.+|+.|++-++.+.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~~~~IA-~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDDIDNIA-KDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHT-TSSTTCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhH
Confidence 59999999999999999999999999 5999999999999988777665
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.46 E-value=1.7e-05 Score=74.54 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHA 163 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHa 163 (199)
...||+||..+|.++|.+||+ +|..|+ .+|++||..||..||
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~-~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQ-QMLPDKSIASLVKFY 230 (482)
T ss_dssp --------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHH-HHcCCCCHHHHHHHh
Confidence 347999999999999999999 999999 599999999998754
No 51
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.34 E-value=0.00049 Score=52.47 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGR--GDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGk--GdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
-.-||.|||+..|.+.++-|. ..|..|| ..+++|++.||+.|+|..
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA-~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVIS-QQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHH-HHHSSCCHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHH-HHHccCCHHHHHHHHHHH
Confidence 568999999999999999874 4899999 599999999999999875
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.05 E-value=0.00067 Score=48.83 Aligned_cols=54 Identities=20% Similarity=0.398 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC---------CCChhhhhhhhcC----CCCHHHHHHHHHHHHHHhhh
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLG---------RGDWRGISKNFVT----TRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyG---------kGdWk~IAr~~V~----TRT~~QVrsHaQKYf~rl~~ 172 (199)
+....||++|-.+||++....- ...|..||. .|. .||+.||+..+.+-......
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~-~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS-KMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999999997532 127999995 654 79999999988776555543
No 53
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.94 E-value=0.00015 Score=52.65 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGR--GDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGk--GdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
-.-||.|||+.+|...++-|. ..|..||+ .+ +|||.||..++|..
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~-~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAA-KL-DKNPNQVSERFQQL 60 (70)
Confidence 467999999999999999884 48999995 66 89999999988765
No 54
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.83 E-value=0.0016 Score=53.06 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=42.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCChhhhhhh-hcCCCCHHHHHHHHHHHHHHh
Q 038601 117 RKKGVPWTEEEHRVFLMGLEKLG--RGDWRGISKN-FVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 117 rkk~~~WTeEEh~~FLegL~kyG--kGdWk~IAr~-~V~TRT~~QVrsHaQKYf~rl 170 (199)
+..-..||+.|-..|+.|+.+|| .++|..|+++ -+..||+.+|+.+++.+..+.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 45567899999999999999999 6799999852 256899999998887766553
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.55 E-value=0.0025 Score=51.89 Aligned_cols=51 Identities=22% Similarity=0.522 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhh-------------hcCCCCHHHHHHHHHHHHHHhh
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKN-------------FVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~-------------~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
...||+|||..||.||.+||.|+|..|-.+ +..+++..++..++. |++++-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~-~Ll~~l 197 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRAD-YLIKLL 197 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHH-HHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHH-HHHHHH
Confidence 456999999999999999999999999631 123466778888875 555543
No 56
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.22 E-value=0.013 Score=44.30 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhhhhc----CCCCHHHHHHHHHHHHHHhhh
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISKNFV----TTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V----~TRT~~QVrsHaQKYf~rl~~ 172 (199)
..||.||-..|++.+++|+- +|--|+..|- +.||..+++.|+-..-.++..
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~ 85 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN 85 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999998 9999996444 379999999988777666654
No 57
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.91 E-value=0.0047 Score=54.06 Aligned_cols=28 Identities=39% Similarity=0.806 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhhhhh
Q 038601 121 VPWTEEEHRVFLMGLEKLGRGDWRGISK 148 (199)
Q Consensus 121 ~~WTeEEh~~FLegL~kyGkGdWk~IAr 148 (199)
..|+.+||..||.||-+||.|.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4799999999999999999999999953
No 58
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.56 E-value=0.019 Score=52.55 Aligned_cols=48 Identities=23% Similarity=0.382 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHHHh
Q 038601 122 PWTEEEHRVFLMGLEKLGRGDWRGISKNFVT-TRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 122 ~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrsHaQKYf~rl 170 (199)
.||..|=..|+.|+.+||+.+-..|| ..|. ++|+.+|+.+++-|+.+.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA-~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIA-RELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHH-SSCCCSSSHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHH-HHHccCCCHHHHHHHHHHHHHhh
Confidence 59999999999999999999999999 5888 999999998887776654
No 59
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=95.03 E-value=0.013 Score=34.17 Aligned_cols=21 Identities=43% Similarity=0.922 Sum_probs=18.2
Q ss_pred CCcCCCCCCCCCCCccCCCCC
Q 038601 2 GRKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 2 ~R~CS~Cg~~GHNsRTC~~~~ 22 (199)
.++|-.||..||-+|.|+...
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC-
T ss_pred CCeeEeCCCCCcccccCCCcc
Confidence 468999999999999999854
No 60
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=94.46 E-value=0.064 Score=39.77 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---------------ChhhhhhhhcC-----CCCHHHHHHHHHHHH
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRG---------------DWRGISKNFVT-----TRTPTQVASHAQKYF 167 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkG---------------dWk~IAr~~V~-----TRT~~QVrsHaQKYf 167 (199)
+....|.++=|..|++||+.|-.- .=..|| .||. .||..||-+|-|-.-
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs-~yI~~~tGk~RtrKQVSShiQvlk 72 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIA-RYIKLRTGKTRTRKQVSSHIQVLA 72 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHH-HHHHHHHSCCCCSHHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHH-HHHHHHHcccCCccchhHHHHHHH
Confidence 346689999999999999988421 122344 2443 799999999998543
No 61
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=94.00 E-value=0.081 Score=48.46 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhhhhh-----------hhcCCCCHHHHHHHHHHHHH
Q 038601 119 KGVPWTEEEHRVFLMGLEKLGR---GDWRGISK-----------NFVTTRTPTQVASHAQKYFL 168 (199)
Q Consensus 119 k~~~WTeEEh~~FLegL~kyGk---GdWk~IAr-----------~~V~TRT~~QVrsHaQKYf~ 168 (199)
++..||+|||+.||-+|-+||- |.|..|-. =|+.+||+.++..|..--..
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~ 290 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQ 290 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHH
Confidence 4567999999999999999999 99999942 23779999999988864443
No 62
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.70 E-value=0.11 Score=45.40 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=25.1
Q ss_pred ChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 142 DWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 142 dWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
-|+.|| ++++.||...+|+++.|+..+.
T Consensus 173 ~fk~ia-~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFA-EEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH-HHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH-HHCCCCChhhHHHHHHHHHhhc
Confidence 699999 5999999999999999887654
No 63
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=91.44 E-value=0.081 Score=31.30 Aligned_cols=20 Identities=35% Similarity=0.946 Sum_probs=17.4
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
.+|-.||..||-+|.|+.-+
T Consensus 7 ~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSSS
T ss_pred CEEEECCccccCHhHCcccc
Confidence 46999999999999998743
No 64
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=90.46 E-value=0.14 Score=33.02 Aligned_cols=20 Identities=25% Similarity=0.750 Sum_probs=17.9
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
-+|=.||..||-+|+||...
T Consensus 11 ~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 11 DQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp SSCSSSCCTTCCTTSCSSSC
T ss_pred CeeeECCCCCcchhhCcCCc
Confidence 47999999999999999854
No 65
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=87.60 E-value=0.34 Score=29.99 Aligned_cols=16 Identities=44% Similarity=1.219 Sum_probs=9.7
Q ss_pred cCCCCCCCCCCCccCC
Q 038601 4 KCSHCGNTGHNSRTCS 19 (199)
Q Consensus 4 ~CS~Cg~~GHNsRTC~ 19 (199)
+|-.||..||-+|.|+
T Consensus 2 ~C~~Cg~~GH~a~~C~ 17 (39)
T 2a51_A 2 TCFNCGKPGHTARMCR 17 (39)
T ss_dssp BCTTTCCBSSCTTTCC
T ss_pred eeeccCCCCcccccCC
Confidence 4556666666666665
No 66
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=87.08 E-value=0.25 Score=30.33 Aligned_cols=17 Identities=41% Similarity=1.056 Sum_probs=12.1
Q ss_pred cCCCCCCCCCCCccCCC
Q 038601 4 KCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~ 20 (199)
+|--||..||-+|.|+.
T Consensus 2 ~C~~Cg~~GH~~~~C~~ 18 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA 18 (37)
T ss_dssp CBSSSCCSSCCTTTSSC
T ss_pred cccccCCCCcchhhCcC
Confidence 56777777777777765
No 67
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=86.91 E-value=0.31 Score=33.43 Aligned_cols=20 Identities=25% Similarity=0.750 Sum_probs=17.9
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
-+|-.||..||-+|.||...
T Consensus 24 ~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 24 DQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp TBCSSSCCBSSCGGGCTTCC
T ss_pred CcceeCCCCCcccccCcCCc
Confidence 36999999999999999864
No 68
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=86.61 E-value=0.36 Score=32.68 Aligned_cols=19 Identities=37% Similarity=1.029 Sum_probs=12.0
Q ss_pred cCCCCCCCCCCCccCCCCC
Q 038601 4 KCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~~~ 22 (199)
+|-.||..||-+|.|+...
T Consensus 32 ~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 32 RCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp BCTTTCCBSSCGGGCCCCC
T ss_pred eeCCCCCCCCCcCCCcCCC
Confidence 4666666666666666644
No 69
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=85.93 E-value=0.44 Score=29.16 Aligned_cols=17 Identities=41% Similarity=0.915 Sum_probs=15.2
Q ss_pred cCCCCCCCCCCCccCCC
Q 038601 4 KCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~ 20 (199)
.|-.||..||-+|.||+
T Consensus 21 ~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 21 VCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TCSSCCCTTGGGGTTCC
T ss_pred eEccCCCcCCccCcCcC
Confidence 57789999999999985
No 70
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=85.17 E-value=0.44 Score=32.25 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=19.2
Q ss_pred CCCcCCCCCCCCCCCccCCCCC
Q 038601 1 MGRKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 1 m~R~CS~Cg~~GHNsRTC~~~~ 22 (199)
|..+|-.||..||-+|.|+...
T Consensus 3 ~~~~C~~Cg~~GH~a~~C~~~~ 24 (61)
T 2ihx_A 3 ARGLCYTCGSPGHYQAQCPKKR 24 (61)
T ss_dssp CTTBCSSSCCBTCCGGGCTTTT
T ss_pred CCCcccccCCCCeehhhCcCCc
Confidence 4578999999999999999854
No 71
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=84.86 E-value=0.46 Score=31.21 Aligned_cols=19 Identities=37% Similarity=0.934 Sum_probs=13.2
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
.+|-.||..||-++.|+..
T Consensus 13 ~~C~~Cg~~GH~a~~C~~~ 31 (55)
T 1a1t_A 13 VKCFNCGKEGHIAKNCRAP 31 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSC
T ss_pred cceeeeCCCCcChhhcCCC
Confidence 4577777777777777654
No 72
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=84.18 E-value=0.52 Score=29.16 Aligned_cols=16 Identities=31% Similarity=0.887 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCccCCC
Q 038601 5 CSHCGNTGHNSRTCSS 20 (199)
Q Consensus 5 CS~Cg~~GHNsRTC~~ 20 (199)
|-.||..||-+|.||+
T Consensus 24 C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 24 CWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CTTTCCSSSCTTTSCC
T ss_pred cccCCCCCCccCcCcC
Confidence 6689999999999984
No 73
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.52 E-value=3.1 Score=36.28 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCChhhhhh-hhcCCCCHHHHHHHHH
Q 038601 120 GVPWTEEEHRVFLMGLEKLG--RGDWRGISK-NFVTTRTPTQVASHAQ 164 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyG--kGdWk~IAr-~~V~TRT~~QVrsHaQ 164 (199)
.++||+.|=+.|+.++.+|| ..+|..|++ .-+..+++..++.-++
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~ 50 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYD 50 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHH
Confidence 46799999999999999999 468999964 2456788887665444
No 74
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=83.37 E-value=0.64 Score=30.15 Aligned_cols=19 Identities=37% Similarity=1.001 Sum_probs=16.2
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
.+|-.||..||-++.|+..
T Consensus 7 ~~C~~Cg~~GH~a~~C~~~ 25 (49)
T 2ec7_A 7 IRCWNCGKEGHSARQCRAP 25 (49)
T ss_dssp CBCTTTCCBTCCTTTCCCS
T ss_pred CeeeecCCCCcChhhCcCC
Confidence 5788999999999999874
No 75
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=82.50 E-value=0.81 Score=29.67 Aligned_cols=20 Identities=35% Similarity=0.838 Sum_probs=17.3
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
..|-.||..||-+|.||...
T Consensus 28 ~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 28 QGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CSCSSSCCSSCCGGGCCSSC
T ss_pred CeeCcCCCcCCccCCCcCCC
Confidence 36899999999999999753
No 76
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=80.70 E-value=0.75 Score=30.18 Aligned_cols=20 Identities=30% Similarity=0.934 Sum_probs=17.5
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
..|-.||..||-+|.||...
T Consensus 34 ~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 34 KGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp CBCTTTCCBSSCGGGCSSSC
T ss_pred CEeCCCCCcCCccCCCcCcC
Confidence 46899999999999999753
No 77
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=79.71 E-value=0.36 Score=32.27 Aligned_cols=21 Identities=33% Similarity=0.901 Sum_probs=0.0
Q ss_pred CCcCCCCCCCCCCCccCCCCC
Q 038601 2 GRKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 2 ~R~CS~Cg~~GHNsRTC~~~~ 22 (199)
+++|-.||..||-+|.|+...
T Consensus 1 G~~Cf~Cg~~GH~a~~C~~~~ 21 (60)
T 1cl4_A 1 GGSCFKCGKKGHFAKNCHEHA 21 (60)
T ss_dssp ---------------------
T ss_pred CCccccCCCCCcCHhhCcCCC
Confidence 468999999999999998753
No 78
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=77.58 E-value=1.3 Score=29.47 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=18.2
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
..|-.||..||-+|.|+...
T Consensus 31 ~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 31 GLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CSCSSCSSCSSCSTTCCCTT
T ss_pred cceeECCCCCCccCcCCCcc
Confidence 67999999999999999864
No 79
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=76.12 E-value=2.8 Score=30.38 Aligned_cols=21 Identities=29% Similarity=0.711 Sum_probs=18.7
Q ss_pred CcCCCCCCCCCCCccCCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYDN 23 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~~ 23 (199)
..|-.||..||=+|.||..+.
T Consensus 47 ~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 47 IYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp CBCSSSSCBSSCGGGCSSCCS
T ss_pred CeecccCCCCcCcccCCcccc
Confidence 579999999999999998763
No 80
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.02 E-value=1.7 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.697 Sum_probs=11.9
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
.+|-.||..||-+|.||..
T Consensus 30 ~~C~~Cg~~GH~ar~Cp~~ 48 (63)
T 2cqf_A 30 KKCHFCQSISHMVASCPLK 48 (63)
T ss_dssp SCCTTTCCSSSCTTTCTGG
T ss_pred CccCCcCCcCCccCcCCCc
Confidence 3456666666666666653
No 81
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.81 E-value=2.1 Score=29.09 Aligned_cols=18 Identities=28% Similarity=0.942 Sum_probs=16.7
Q ss_pred CcCCCCCCCCCCCccCCC
Q 038601 3 RKCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~ 20 (199)
.+|-.||..||-+|.|+.
T Consensus 8 ~~C~~Cg~~GH~a~~C~~ 25 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKL 25 (63)
T ss_dssp CCCSSSCCSSSCTTTCCS
T ss_pred CcccccCCCCcChhhCCC
Confidence 579999999999999996
No 82
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=70.72 E-value=2 Score=30.47 Aligned_cols=17 Identities=29% Similarity=0.767 Sum_probs=9.4
Q ss_pred cCCCCCCCCCCCccCCC
Q 038601 4 KCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 4 ~CS~Cg~~GHNsRTC~~ 20 (199)
.|-.||..||-+|.||.
T Consensus 48 ~C~~Cg~~GH~ar~Cp~ 64 (74)
T 2li8_A 48 KCHFCQSISHMVASCPL 64 (74)
T ss_dssp CCTTTCCTTSCGGGCTT
T ss_pred ccCCcCCcCCccCcCcC
Confidence 45555555555555554
No 83
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=68.69 E-value=2.7 Score=29.72 Aligned_cols=18 Identities=28% Similarity=0.942 Sum_probs=16.6
Q ss_pred CcCCCCCCCCCCCccCCC
Q 038601 3 RKCSHCGNTGHNSRTCSS 20 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~ 20 (199)
.+|-.||..||-++.|+.
T Consensus 25 ~~C~~Cg~~GH~a~~C~~ 42 (74)
T 2li8_A 25 DRCYNCGGLDHHAKECKL 42 (74)
T ss_dssp SCCTTTCCSSSCTTTCSS
T ss_pred CcccccCCcCcCcccCCC
Confidence 479999999999999996
No 84
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=68.00 E-value=2.8 Score=31.42 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=16.2
Q ss_pred CcCCCCCCCCCCCccCCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSYD 22 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~~ 22 (199)
..|-.||..||.+|.||...
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~ 84 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIW 84 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCST
T ss_pred ccCCCCCcCCcchhhCCCcc
Confidence 46888999999999998753
No 85
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=66.70 E-value=2.6 Score=33.22 Aligned_cols=19 Identities=26% Similarity=0.838 Sum_probs=17.1
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
.+|-.||..||-+|.|+..
T Consensus 98 ~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 98 DRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp CCCTTTCCSSCCGGGCCSC
T ss_pred CcccEeCCccchhhhCCCC
Confidence 3699999999999999974
No 86
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=64.17 E-value=2.4 Score=30.77 Aligned_cols=19 Identities=26% Similarity=0.728 Sum_probs=16.6
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
..|-.|+..||-+|.||..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4799999999999999974
No 87
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.95 E-value=4 Score=27.68 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=17.1
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
..|=-||.-||-.+-||+.
T Consensus 8 ~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 8 YTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp CCCTTTCCTTSCGGGCSGG
T ss_pred CccccCCCcCcccccCCCC
Confidence 5799999999999999964
No 88
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=57.74 E-value=10 Score=28.44 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCChhhhhhhhcCCCCHHHHHHHHHHHHHHhh
Q 038601 140 RGDWRGISKNFVTTRTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 140 kGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~ 171 (199)
.+.|+.||+ .++--...+++.|+.+|+....
T Consensus 70 ~~~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE 100 (116)
T 2li6_A 70 TQQWSMVAQ-RLQISDYQQLESIYFRILLPYE 100 (116)
T ss_dssp TTCHHHHHH-HHTSCCTTHHHHHHHHHHSHHH
T ss_pred cCcHHHHHH-HhCCChHHHHHHHHHHHHHHHH
Confidence 458999995 7766558899999999976544
No 89
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=57.34 E-value=5.5 Score=29.74 Aligned_cols=19 Identities=32% Similarity=0.906 Sum_probs=12.9
Q ss_pred CcCCCCCCCCCCCccCCCC
Q 038601 3 RKCSHCGNTGHNSRTCSSY 21 (199)
Q Consensus 3 R~CS~Cg~~GHNsRTC~~~ 21 (199)
..|-.|+..||.+|.||..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~ 23 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHI 23 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSC
T ss_pred CcccCCCCCCcCcccCcCC
Confidence 4577777777777777653
No 90
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=54.62 E-value=22 Score=25.83 Aligned_cols=31 Identities=6% Similarity=0.203 Sum_probs=23.0
Q ss_pred CChhhhhhhhcCCCC----HHHHHHHHHHHHHHhhh
Q 038601 141 GDWRGISKNFVTTRT----PTQVASHAQKYFLRQKN 172 (199)
Q Consensus 141 GdWk~IAr~~V~TRT----~~QVrsHaQKYf~rl~~ 172 (199)
+.|+.||+ .++--. ..+++.|+.+|+.....
T Consensus 66 ~~W~~va~-~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 66 RKWAKVAN-RMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp TTHHHHHH-HTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 48999996 665422 56899999999776654
No 91
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.57 E-value=17 Score=27.31 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=27.6
Q ss_pred HHHHHHHhC-------CCChhhhhhhhcCCCC----HHHHHHHHHHHHHHhhh
Q 038601 131 FLMGLEKLG-------RGDWRGISKNFVTTRT----PTQVASHAQKYFLRQKN 172 (199)
Q Consensus 131 FLegL~kyG-------kGdWk~IAr~~V~TRT----~~QVrsHaQKYf~rl~~ 172 (199)
|-..+.+.| .+.|+.||+ .++--. ..+++.|+++|+.....
T Consensus 45 Ly~~V~~~GG~~~V~~~~~W~~Va~-~lg~~~~~~a~~~Lk~~Y~k~L~~yE~ 96 (117)
T 2jrz_A 45 LSKIVVEEGGYEAICKDRRWARVAQ-RLNYPPGKNIGSLLRSHYERIVYPYEM 96 (117)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHH-HTTCCTTCTHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHccCHHHhcccCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 344455555 348999995 665432 67899999999765543
No 92
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.77 E-value=31 Score=26.04 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=24.9
Q ss_pred CCChhhhhhhhcCCCC----HHHHHHHHHHHHHHhhhhcc
Q 038601 140 RGDWRGISKNFVTTRT----PTQVASHAQKYFLRQKNLYK 175 (199)
Q Consensus 140 kGdWk~IAr~~V~TRT----~~QVrsHaQKYf~rl~~~~K 175 (199)
.+.|+.||+ .++--. ..+++.|+++|+.......+
T Consensus 63 ~k~W~~V~~-~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~~ 101 (122)
T 2eqy_A 63 DRKWTKIAT-KMGFAPGKAVGSHIRGHYERILNPYNLFLS 101 (122)
T ss_dssp TTTHHHHHH-HTTCCSSSHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCcHHHHHH-HhCCCCCCcHHHHHHHHHHHHhHHHHHHHh
Confidence 458999995 665322 46899999999877665433
No 93
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.37 E-value=18 Score=27.41 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=23.6
Q ss_pred CChhhhhhhhcCCCC----HHHHHHHHHHHHHHhhhh
Q 038601 141 GDWRGISKNFVTTRT----PTQVASHAQKYFLRQKNL 173 (199)
Q Consensus 141 GdWk~IAr~~V~TRT----~~QVrsHaQKYf~rl~~~ 173 (199)
+.|+.||+ .++--+ ..+++.|+++|+......
T Consensus 73 ~~W~~Va~-~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 73 KKWRELAT-NLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp TCHHHHHH-HTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 49999995 665433 468999999997766543
No 94
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=46.45 E-value=14 Score=28.22 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=25.3
Q ss_pred CChhhhhhhhcCCCCHHHHHHHHHHHHHHhhh
Q 038601 141 GDWRGISKNFVTTRTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 141 GdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~ 172 (199)
+.|+.||+ -++--...+++.++.+|+.....
T Consensus 70 k~W~~Va~-~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 70 QQWSMVAQ-RLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHH-HHCCChHHHHHHHHHHHHHHHHH
Confidence 48999995 66655599999999999886654
No 95
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=44.57 E-value=26 Score=26.54 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.9
Q ss_pred CChhhhhhhhcCC-C----CHHHHHHHHHHHHHHhhhhcc
Q 038601 141 GDWRGISKNFVTT-R----TPTQVASHAQKYFLRQKNLYK 175 (199)
Q Consensus 141 GdWk~IAr~~V~T-R----T~~QVrsHaQKYf~rl~~~~K 175 (199)
+.|+.||+ .++- . ...+++.|+.+|+.......+
T Consensus 74 k~W~~Va~-~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 74 KLWQEIIK-GLHLPSSITSAAFTLRTQYMKYLYPYECEKK 112 (128)
T ss_dssp TTHHHHHH-HTCCCSSCCSHHHHHHHHHHHHTHHHHHHHH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 48999996 5552 2 267999999999887765443
No 96
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=43.72 E-value=69 Score=23.84 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=34.2
Q ss_pred CCCCCCCCCHHH-----------HHHHHHHHHHhC----------CCChhhhhhhhcCCCCHHHHHHHHHHHHHHh
Q 038601 116 DRKKGVPWTEEE-----------HRVFLMGLEKLG----------RGDWRGISKNFVTTRTPTQVASHAQKYFLRQ 170 (199)
Q Consensus 116 ~rkk~~~WTeEE-----------h~~FLegL~kyG----------kGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl 170 (199)
+.-+++.||.|+ -.-++.-|+.+| -|+=+.|++ |+.-.|...-|.++|-.-
T Consensus 9 ~~~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaK----tanK~qLiaAY~~lfE~~ 80 (88)
T 2lc3_A 9 ENGKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRK----NRNCSQLIAAYKDFCEHG 80 (88)
T ss_dssp CSCCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHH----HSCHHHHHHHHHHHHHHT
T ss_pred ccCccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHh----cCcHHHHHHHHHHHHhcc
Confidence 445688999999 344555666555 234455555 899999888777777543
No 97
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=39.65 E-value=14 Score=27.00 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=21.5
Q ss_pred CChhhhhhhhcCC-----CCHHHHHHHHHHHHHHhh
Q 038601 141 GDWRGISKNFVTT-----RTPTQVASHAQKYFLRQK 171 (199)
Q Consensus 141 GdWk~IAr~~V~T-----RT~~QVrsHaQKYf~rl~ 171 (199)
+.|+.||+ .++- -...+++.|+++|+....
T Consensus 55 ~~W~~Va~-~lg~~~~~~s~~~~Lk~~Y~k~L~~yE 89 (107)
T 1ig6_A 55 RQWKHIYD-ELGGNPGSTSAATCTRRHYERLILPYE 89 (107)
T ss_dssp TTHHHHHH-HHTCCTTCTTTTTTHHHHHHHHTTTTH
T ss_pred CcHHHHHH-HhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 49999996 5552 234689999999965443
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=38.11 E-value=28 Score=26.60 Aligned_cols=32 Identities=9% Similarity=0.294 Sum_probs=23.6
Q ss_pred CCChhhhhhhhcCC-----CCHHHHHHHHHHHHHHhhh
Q 038601 140 RGDWRGISKNFVTT-----RTPTQVASHAQKYFLRQKN 172 (199)
Q Consensus 140 kGdWk~IAr~~V~T-----RT~~QVrsHaQKYf~rl~~ 172 (199)
.+.|+.||+ -++- -...+++.|+.||+.....
T Consensus 63 ~k~W~~Va~-~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 63 LKKWNKLAD-MLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp TTCHHHHHH-HTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred cCcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 359999996 5542 2357899999999887654
No 99
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=38.06 E-value=15 Score=26.31 Aligned_cols=30 Identities=13% Similarity=0.258 Sum_probs=21.5
Q ss_pred CChhhhhhhhcCC-C---CHHHHHHHHHHHHHHhh
Q 038601 141 GDWRGISKNFVTT-R---TPTQVASHAQKYFLRQK 171 (199)
Q Consensus 141 GdWk~IAr~~V~T-R---T~~QVrsHaQKYf~rl~ 171 (199)
+.|+.||+ .++- . ...+++.|+++|+....
T Consensus 58 ~~W~~v~~-~lg~~~~~~~~~~Lk~~Y~k~L~~yE 91 (96)
T 2jxj_A 58 KKWSKVGS-RLGYLPGKGTGSLLKSHYERILYPYE 91 (96)
T ss_dssp TTHHHHHH-HHTCCSCSCHHHHHHHHHTTTTHHHH
T ss_pred CcHHHHHH-HhCCCCcCcHHHHHHHHHHHHHHHHH
Confidence 49999996 5552 1 25689999998876544
No 100
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=37.08 E-value=17 Score=28.16 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhh
Q 038601 118 KKGVPWTEEEHRVFLMGLEKLGRGDWRG 145 (199)
Q Consensus 118 kk~~~WTeEEh~~FLegL~kyGkGdWk~ 145 (199)
+++.+|++||..+++++-..+|. .|.+
T Consensus 77 krg~~~p~e~~~rv~~~h~~~gn-~~~~ 103 (121)
T 2juh_A 77 RRGEPVPQDLLDRVLAAHAYWSQ-QQGK 103 (121)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHH-HHCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHcc-chhc
Confidence 33569999999999999999997 5544
No 101
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.65 E-value=33 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=23.5
Q ss_pred CChhhhhhhhcCC-C----CHHHHHHHHHHHHHHhhhh
Q 038601 141 GDWRGISKNFVTT-R----TPTQVASHAQKYFLRQKNL 173 (199)
Q Consensus 141 GdWk~IAr~~V~T-R----T~~QVrsHaQKYf~rl~~~ 173 (199)
..|+.||+ -++- . ...+++.+|++|+......
T Consensus 86 ~~W~~Va~-~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 86 KLWREITK-GLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp TCHHHHHH-HTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred CcHHHHHH-HhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 49999996 5552 2 2678999999997766554
No 102
>3o2i_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Leptospirillum rubarum}
Probab=28.29 E-value=33 Score=26.53 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=21.4
Q ss_pred CCCCCHHHH-HHHHHHHHHhCCCChhh
Q 038601 120 GVPWTEEEH-RVFLMGLEKLGRGDWRG 145 (199)
Q Consensus 120 ~~~WTeEEh-~~FLegL~kyGkGdWk~ 145 (199)
...||+||= +++|+|++.-..-+|+.
T Consensus 48 ~~~~TE~EF~~LLLEA~~~sSsS~W~~ 74 (125)
T 3o2i_A 48 SEYWTEDEFYNLLLEAFQRSSASDWHL 74 (125)
T ss_dssp SSCCCHHHHHHHHHHHHTTSCSCCHHH
T ss_pred cccccHHHHHHHHHHHHHhccCCcHHH
Confidence 457999995 67889999888889984
No 103
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=27.70 E-value=24 Score=31.50 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHH---------HhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhhccCCCCCCcccc
Q 038601 120 GVPWTEEEHRVFLMGLE---------KLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKNLYKRKRRPSLFDV 185 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~---------kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~~~K~krr~Sl~Di 185 (199)
..|=.+.+-..|..-|+ -||+|.|+-+- -.||.+||...|...++..|..+-.+..++
T Consensus 194 ~~pi~d~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~fn~l 260 (317)
T 4g0a_A 194 DKPISDVHVKELVAELRWQYNKFAVITHGKGHYRIVK--------YSSVANHADRVYATFKSNVKTGVNNDFNLL 260 (317)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTEEEECCSSSSEEEEE--------GGGHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhccCCCcchhhc
Confidence 45667777777777776 34899999875 268999999999999988887766665554
No 104
>2gu0_A Nonstructural protein 2; NSP2, HIT motif, bristol, viral protein; 2.80A {Human rotavirus C}
Probab=24.51 E-value=24 Score=31.44 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHH---------HhCCCChhhhhhhhcCCCCHHHHHHHHHHHHHHhhhhccCCCCCCcccc
Q 038601 120 GVPWTEEEHRVFLMGLE---------KLGRGDWRGISKNFVTTRTPTQVASHAQKYFLRQKNLYKRKRRPSLFDV 185 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~---------kyGkGdWk~IAr~~V~TRT~~QVrsHaQKYf~rl~~~~K~krr~Sl~Di 185 (199)
..|=.+.-...|..-|+ -||+|.|+-+- -.||.+||...|...++..|.++-.+..++
T Consensus 191 ~~pi~D~~~kelvAelRwqyNkFAvItHGkgHyRvV~--------ys~v~nHAdRv~at~ks~~K~~~~~~f~~l 257 (312)
T 2gu0_A 191 KTDIPDRNQTAFAAYIRYNFNKFAAISHGKRHWRLVL--------HSQLMSHAERLDRKIKSDKKHGRQFSYDDG 257 (312)
T ss_dssp SSCCCHHHHHHHHHHHHHHSTTEEEECSSSSEEEEEE--------GGGHHHHHHHHHHHHHCCC-------CCCT
T ss_pred CCcCchHHHHHHHHHHHHhhcceEEEecCCccEEEEe--------hHHhhhhHHHHHHHHhhhhhcCCCcccccc
Confidence 44555555556665555 34899998875 268999999999999987777655454443
No 105
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.79 E-value=1.5e+02 Score=19.14 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhcCC
Q 038601 125 EEEHRVFLMGLEKLGRGDWRGISKNFVTT 153 (199)
Q Consensus 125 eEEh~~FLegL~kyGkGdWk~IAr~~V~T 153 (199)
+-|...+.++|++++. ++...|+ .++-
T Consensus 18 ~~E~~~i~~aL~~~~g-n~~~aA~-~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDY-DLKRTAE-EIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTT-CHHHHHH-HHTC
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHH-HHCc
Confidence 4577888999999985 9999995 6664
No 106
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.53 E-value=82 Score=23.82 Aligned_cols=39 Identities=21% Similarity=0.042 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 126 EEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 126 EEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
+-|.++|..|++-|+-.|..||+ .++ =++..|+.|.++.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~-~lg-~s~~tv~~rl~~L 41 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAK-KVG-LSTTPCWRRIQKM 41 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHH-HHT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHH-HHC-cCHHHHHHHHHHH
Confidence 56788999999999999999995 665 5788888877654
No 107
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=21.49 E-value=49 Score=25.58 Aligned_cols=23 Identities=9% Similarity=-0.088 Sum_probs=19.3
Q ss_pred CCCCCCCHHH-HHHHHHHHHHhCC
Q 038601 118 KKGVPWTEEE-HRVFLMGLEKLGR 140 (199)
Q Consensus 118 kk~~~WTeEE-h~~FLegL~kyGk 140 (199)
.+.+.|++|| +++++++-..||.
T Consensus 90 ~kr~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 90 QRRGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhh
Confidence 4557899999 7888999999986
No 108
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=21.38 E-value=1.4e+02 Score=23.01 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhCCCChhhhhhhhcCCCCHHHHHHHHHHH
Q 038601 125 EEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKY 166 (199)
Q Consensus 125 eEEh~~FLegL~kyGkGdWk~IAr~~V~TRT~~QVrsHaQKY 166 (199)
++-+.++|..|++.|+-.|..||+ .++ -++..|+.+.++.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~-~lg-lS~~tv~~rl~~L 65 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISK-ITG-LAESTIHERIRKL 65 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHH-HHT-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHH-HHC-cCHHHHHHHHHHH
Confidence 456778999999999889999995 776 4888887766544
No 109
>2jz6_A 50S ribosomal protein L28; structure, NESG, ribonucleoprotein, structural genomics, PSI-2, protein structure initiative; NMR {Thermotoga maritima MSB8} SCOP: d.325.1.1
Probab=21.30 E-value=34 Score=24.67 Aligned_cols=11 Identities=36% Similarity=1.192 Sum_probs=9.7
Q ss_pred CCCcCCCCCCC
Q 038601 1 MGRKCSHCGNT 11 (199)
Q Consensus 1 m~R~CS~Cg~~ 11 (199)
|+|+|--||.-
T Consensus 6 Msr~C~itGK~ 16 (77)
T 2jz6_A 6 MAKRCEVCGKA 16 (77)
T ss_dssp CCCCCTTTCCC
T ss_pred eeeeeeecCCc
Confidence 89999999964
No 110
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=20.53 E-value=1.9e+02 Score=21.36 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhhhhhhhcC-CCCHHHHHHHHHHHHHHhhhhccCCCCCCccccchhhH
Q 038601 120 GVPWTEEEHRVFLMGLEKLGRGDWRGISKNFVT-TRTPTQVASHAQKYFLRQKNLYKRKRRPSLFDVMPWAW 190 (199)
Q Consensus 120 ~~~WTeEEh~~FLegL~kyGkGdWk~IAr~~V~-TRT~~QVrsHaQKYf~rl~~~~K~krr~Sl~Di~~~~~ 190 (199)
...|-..-++.+|+.|++.|.-.-..||+ .+. .=|+..|+.|-++- ....-..+. .|. +..++....
T Consensus 7 ~~~~md~~d~~IL~~L~~~g~~s~~eLA~-~l~~giS~~aVs~rL~~L-e~~GLV~~~-~rg-~Y~LT~~G~ 74 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEGNGSPKELED-RDEIRISKSSVSRRLKKL-ADHDLLQPL-ANG-VYVITEEGE 74 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHSCBCHHHHHT-STTCCSCHHHHHHHHHHH-HHTTSEEEC-STT-CEEECHHHH
T ss_pred hhhhcCHHHHHHHHHHHHcCCCCHHHHHH-HHhcCCCHHHHHHHHHHH-HHCCCEEec-CCc-eEEECchHH
Confidence 45788888999999999999999999994 663 45777777655432 222112333 333 777776654
Done!