BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038604
(315 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 164 AEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKG 222
A K+ P V + L SLEEIY G KKM+IS + GK+ R ++ILT+E+K GWK+G
Sbjct: 6 ARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEG 65
Query: 223 TKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXX 282
TKITFP++G+Q I AD++F++ +KPH +++RDG+D++ I+L EA
Sbjct: 66 TKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPT 125
Query: 283 XXXRNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
R + + D+++PG VP EG+P+ K P
Sbjct: 126 LDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTP 158
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 167 KKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKI 225
K+ P V + L SLEEIY G KKM+IS + GK+ R ++ILT+E+K GWK+GTKI
Sbjct: 2 KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 61
Query: 226 TFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXX 285
TFP++G+Q I AD++F++ +KPH +++RDG+D++ I+L EA
Sbjct: 62 TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 121
Query: 286 RNLMIPLTDIVKPGTEIVVPNEGMPISKEP 315
R + + D+++PG VP EG+P+ K P
Sbjct: 122 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTP 151
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 170 PAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKT-RTVEEILTVEIKPGWKKGTKITFP 228
P V + L SLEEIY G KKM+IS + GK+ R ++ILT+E+K GWK+GTKITFP
Sbjct: 3 PPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFP 62
Query: 229 EKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNL 288
++G+Q I AD++F++ +KPH +++RDG+D++ I+L EA R +
Sbjct: 63 KEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTI 122
Query: 289 MIPLTDIVKPGTEIVVPNEGMPISKEP 315
+ D+++PG VP EG+P+ K P
Sbjct: 123 PVVFKDVIRPGMRRKVPGEGLPLPKTP 149
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 80/141 (56%), Gaps = 2/141 (1%)
Query: 176 LPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQE- 234
L +LEE+Y G +KK++++R + K R E I+ VEIKPGWK GTK+T+ +G+QE
Sbjct: 10 LLVTLEELYLGKRKKIKVTRKRFIE-HKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQES 68
Query: 235 PGIIAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLMIPLTD 294
PG DL+ I+ K H + RD L+ I L+ A RNL IP+ +
Sbjct: 69 PGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQIPIKE 128
Query: 295 IVKPGTEIVVPNEGMPISKEP 315
IV P T +VPNEG PI +P
Sbjct: 129 IVNPKTRKIVPNEGXPIKNQP 149
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Query: 5 YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
YY IL V R+A+ DD+KKAY+R A+ WHPDKNP +K AE KFK+++EAY+VLSD KR
Sbjct: 4 YYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEF-AEKKFKEVAEAYEVLSDKHKR 62
Query: 65 QIYDLYGEEGL 75
+IYD YG EGL
Sbjct: 63 EIYDRYGREGL 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Query: 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
G DYY L + R A+++++K+AY+R A+ +HPDKN K AE KFK+I+EAYDVLSDP
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKN---KEPGAEEKFKEIAEAYDVLSDP 58
Query: 62 QKRQIYDLYGEEGLK 76
+KR+I+D YGEEGLK
Sbjct: 59 RKREIFDRYGEEGLK 73
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 54/68 (79%), Gaps = 1/68 (1%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY +L V R A+ + +KKAY++LA+ WHPDKNP +K EAE +FKQ++EAY+VLSD +K
Sbjct: 10 DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENK-EEAERRFKQVAEAYEVLSDAKK 68
Query: 64 RQIYDLYG 71
R IYD YG
Sbjct: 69 RDIYDRYG 76
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY IL V++ A E +++KAYKRLAM +HPD+N K EAEAKFK+I EAY+VL+D QK
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQK 61
Query: 64 RQIYDLYG 71
R YD YG
Sbjct: 62 RAAYDQYG 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY IL V++ A E +++KAYKRLAM +HPD+N K EAEAKFK+I EAY+VL+D QK
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQK 61
Query: 64 RQIYDLYG 71
R YD YG
Sbjct: 62 RAAYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY IL V++ A E +++KAYKRLAM +HPD+N K EAEAKFK+I EAY+VL+D QK
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK--EAEAKFKEIKEAYEVLTDSQK 61
Query: 64 RQIYDLYG 71
R YD YG
Sbjct: 62 RAAYDQYG 69
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
+YY +L V +A+ +D+KKAY++LA+ WHPDKNP +K EAE KFK +SEAY+VLSD +K
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKE-EAEKKFKLVSEAYEVLSDSKK 68
Query: 64 RQIYDLYG 71
R +YD G
Sbjct: 69 RSLYDRAG 76
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 3/69 (4%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY IL V+R A+++DLKKAY+RLA+ +HPDKN + TEA FK I AY VLS+P+K
Sbjct: 8 DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA---FKAIGTAYAVLSNPEK 64
Query: 64 RQIYDLYGE 72
R+ YD +G
Sbjct: 65 RKQYDQFGS 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 55/69 (79%), Gaps = 5/69 (7%)
Query: 5 YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
YY++L V NA +++LKKAY++LA+ +HPDKNP+ E E KFKQIS+AY+VLSD +KR
Sbjct: 8 YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN----EGE-KFKQISQAYEVLSDAKKR 62
Query: 65 QIYDLYGEE 73
++YD GE+
Sbjct: 63 ELYDKGGEQ 71
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 54/69 (78%), Gaps = 5/69 (7%)
Query: 5 YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
YY++L V +A++++LKKAY+++A+ +HPDKNP + +FKQIS+AY+VLSD +KR
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNP-----DGAEQFKQISQAYEVLSDEKKR 64
Query: 65 QIYDLYGEE 73
QIYD GEE
Sbjct: 65 QIYDQGGEE 73
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
V+ LP SLE+++ G KK +I R + ++ +++KPGWK GTKIT+ +
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQID----IQLKPGWKAGTKITYKNQ 57
Query: 231 GNQEPGI-IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLM 289
G+ P L F++ EK H ++RDG+DL+ ++ E+ R L
Sbjct: 58 GDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLP 117
Query: 290 IPLTDIVKPGTEIVVPNEGMPISKEP 315
+ V+P P +GMP K P
Sbjct: 118 LSRVQPVQPSQTSTYPGQGMPTPKNP 143
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 2/74 (2%)
Query: 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDP 61
G Y++L +++NA DD+KK+Y++LA+ +HPDKNP + EA KFK+I+ A+ +L+D
Sbjct: 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDA 73
Query: 62 QKRQIYDLYGEEGL 75
KR IYD YG GL
Sbjct: 74 TKRNIYDKYGSLGL 87
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 171 AVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEK 230
V+ LP SLE+++ G KK +I R + ++ +++KPGWK GTKIT+ +
Sbjct: 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQID----IQLKPGWKAGTKITYKNQ 57
Query: 231 GNQEPGI-IAADLIFIVDEKPHALYRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLM 289
G+ P L F++ EK H ++RDG+DL+ ++ E+ R L
Sbjct: 58 GDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLP 117
Query: 290 IPLTDIVKPGTEIVVPNEGMPISKEP 315
+ V+P P +GMP K P
Sbjct: 118 LSRVQPVQPSQTSTYPGQGMPTPKNP 143
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60
+ FD Y +L V+R A++ D+KKAYK+LA WHPDKN K AE +F QIS+AY++LS+
Sbjct: 15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKN---KDPGAEDRFIQISKAYEILSN 71
Query: 61 PQKRQIYDLYG 71
+KR YD YG
Sbjct: 72 EEKRTNYDHYG 82
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Query: 203 KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLV 262
K +IL V ++PG K G +I F + +Q P +I D++FIV E+PH ++RDG+DLV
Sbjct: 106 KVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLV 165
Query: 263 VGQEITLLEAXXXXXXXXXXXXXRNLMIPLT--DIVKPGTEIVVPNEGMPISK 313
EI LL A L + + +++ PG V+ +GMPI K
Sbjct: 166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPK 218
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 5 YYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64
YY+IL V ++A+E +KKA+ +LAM +HPDKN K +AEAKF++I+EAY+ LSD +R
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKN---KSPDAEAKFREIAEAYETLSDANRR 65
Query: 65 QIYDLYGEEGL 75
+ YD G
Sbjct: 66 KEYDTLGHSAF 76
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 51/71 (71%), Gaps = 5/71 (7%)
Query: 6 YNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQ 65
Y++L V+ +ANE +LKK Y++ A+ +HPDK T KFK+ISEA+++L+DPQKR+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKP-----TGDTEKFKEISEAFEILNDPQKRE 65
Query: 66 IYDLYGEEGLK 76
IYD YG E +
Sbjct: 66 IYDQYGLEAAR 76
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY IL V RNA++ ++KKAY +LA +HPD N + A+ KF Q++EAY+VLSD K
Sbjct: 8 DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPK--AKEKFSQLAEAYEVLSDEVK 65
Query: 64 RQIYDLYG 71
R+ YD YG
Sbjct: 66 RKQYDAYG 73
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
++Y++L V++ A+ ++++A+K+LA+ HPDKNP++ A F +I+ AY+VL D
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLKDEDL 79
Query: 64 RQIYDLYGEEGLK 76
R+ YD YGE+GL+
Sbjct: 80 RKKYDKYGEKGLE 92
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
++Y++L V++ A+ ++++A+K+LA+ HPDKNP++ A F +I+ AY+VL D
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDEDL 60
Query: 64 RQIYDLYGEEGLK 76
R+ YD YGE+GL+
Sbjct: 61 RKKYDKYGEKGLE 73
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 107/264 (40%), Gaps = 60/264 (22%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY IL V + +K AY+RLA +HPD + K +AEAKFK ++EA++VL D Q+
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVS---KENDAEAKFKDLAEAWEVLKDEQR 85
Query: 64 RQIYDLYGEEGLKXXXXXXXXXXXXXXRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFX 123
R YD + R + QRQ S ++ +D +DI+ +F
Sbjct: 86 RAEYDQLWQH-----------------RNDPGFGRQRQTHEQS--YSQQDFDDIFSSMFG 126
Query: 124 XXXXXXXXXXXXXXXXIRGYSHREGLFRNGNCSSTASGGAAEFKKAPAVENLLPCSLEEI 183
+ + R A G E + A +E L
Sbjct: 127 Q----------------QAHQRRR--------QHAARGHDLEIEVAVFLEETL------- 155
Query: 184 YKGAKKKMRISRN--VYDSVGKTRT-VEEILTVEIKPGWKKGTKITFPEKGN-QEPGIIA 239
A++ IS N VY+ G + + L V+I G G +I +G E G
Sbjct: 156 ---AEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPN 212
Query: 240 ADLIFIVDEKPHALYRRDGNDLVV 263
DL ++ PH L+ G++L +
Sbjct: 213 GDLWLVIHIAPHPLFDIVGHNLEI 236
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY I+ V + +K AY+RLA +HPD + K +AEA+FK+++EA++VLSD Q+
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVS---KEPDAEARFKEVAEAWEVLSDEQR 62
Query: 64 RQIYD 68
R YD
Sbjct: 63 RAEYD 67
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDK-NPSHKRTEAEAKFKQISEAYDVLSDPQ 62
DYY IL V RNA + ++ KAY++LA+ WHPD ++ +AE KF I+ A +VLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63 KRQIYD 68
R+ +D
Sbjct: 443 XRKKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDK-NPSHKRTEAEAKFKQISEAYDVLSDPQ 62
DYY IL V RNA + ++ KAY++LA+ WHPD ++ +AE KF I+ A +VLSDP+
Sbjct: 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPE 442
Query: 63 KRQIYD 68
R+ +D
Sbjct: 443 MRKKFD 448
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKN----PSHKRTEAEAKFKQISEAYDVLS 59
D+Y+IL + +AN DLK+ Y++L +++HPDK P+ E KF +I +A+ +L
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 60 DPQKRQIYDL 69
+ + ++ YDL
Sbjct: 77 NEETKKKYDL 86
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKN----PSHKRTEAEAKFKQISEAYDVLS 59
D+Y+IL + +AN DLK+ Y++L +++HPDK P+ E KF +I +A+ +L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 60 DPQKRQIYDL 69
+ + ++ YDL
Sbjct: 71 NEETKREYDL 80
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 6 YNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQ 65
Y++L V A + +K AY R ++HPD+N EA +F +IS+AY VL R+
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG--SAEAAERFTRISQAYVVLGSATLRR 77
Query: 66 IYD--LYGEEGLK 76
YD L +E L+
Sbjct: 78 KYDRGLLSDEDLR 90
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 6 YNILKVNRNA-NEDDLKKAYKRLAMIWHPD--KNPSHKRTEAEAKFKQISEAYDVLSDPQ 62
Y++L+VNR ++ L KAY+ LA HPD KN K AE +F+ I+ AY+ L D +
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLL-AEERFRVIATAYETLKDDE 76
Query: 63 KRQIYDLY 70
+ YD Y
Sbjct: 77 AKTNYDYY 84
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
C Menber 12
Length = 112
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQK 63
DYY +L + ++ + + +K A+ HPDK+P + + A F+++ +A ++L++ +
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPK--AVETFQKLQKAKEILTNEES 78
Query: 64 RQIYDLY 70
R YD +
Sbjct: 79 RARYDHW 85
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 35.4 bits (80), Expect = 0.047, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 4 DYYNILKVNRNANEDDLKKAYKRLAMIWHPDK 35
D +++L V A+ D++ KAY++LA++ HPDK
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDK 59
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 254 YRRDGNDLVVGQEITLLEAXXXXXXXXXXXXXRNLMIPLT--DIVKPGTEIVVPNEGMPI 311
++RDG+DLV EI LL A L + + +++ PG V+ +GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 312 SK 313
K
Sbjct: 62 PK 63
>pdb|1IUR|A Chain A, Dnaj Domain Of Human Kiaa0730 Protein
Length = 88
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 17 EDDLKKAYKRLAMIWHPDKNP 37
E + KK +RL + WHPDKNP
Sbjct: 30 ESERKKIIRRLYLKWHPDKNP 50
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1
J-Domain
Length = 106
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Query: 18 DDLKKAYKRLAMIWHPDK-----NPSHKRTEAEAKFKQISEAYD 56
+ ++K+Y+R +I HPDK ++++ AE F+ + EA+D
Sbjct: 55 NAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWD 98
>pdb|3ZVH|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
pdb|3ZVH|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
Length = 438
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 193 ISRNVYDSVGKTR--TVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKP 250
I++ + D+V KTR T+ E++ E PG + F + G+ + +I D P
Sbjct: 134 ITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLP 193
Query: 251 HAL 253
HAL
Sbjct: 194 HAL 196
>pdb|3ZVI|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
pdb|3ZVI|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
Length = 438
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 193 ISRNVYDSVGKTR--TVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKP 250
I++ + D+V KTR T+ E++ E PG + F + G+ + +I D P
Sbjct: 134 ITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLP 193
Query: 251 HAL 253
HAL
Sbjct: 194 HAL 196
>pdb|1KCZ|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex.
pdb|1KCZ|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex
Length = 413
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 193 ISRNVYDSVGKTR--TVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKP 250
I++ + D+V KTR T+ E++ E PG + F + G+ + +I D P
Sbjct: 134 ITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKMIIKEADVLP 193
Query: 251 HAL 253
HAL
Sbjct: 194 HAL 196
>pdb|1KD0|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Apo-Structure.
pdb|1KD0|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Apo-Structure
Length = 413
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 193 ISRNVYDSVGKTR--TVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKP 250
I++ + D+V KTR T E++ E PG + F + G+ + +I D P
Sbjct: 134 ITQAILDAVAKTRKVTXAEVIRDEYNPGAEINAVPVFAQSGDDRYDNVDKXIIKEADVLP 193
Query: 251 HAL 253
HAL
Sbjct: 194 HAL 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,801,718
Number of Sequences: 62578
Number of extensions: 315812
Number of successful extensions: 917
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 52
length of query: 315
length of database: 14,973,337
effective HSP length: 99
effective length of query: 216
effective length of database: 8,778,115
effective search space: 1896072840
effective search space used: 1896072840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (24.3 bits)