Query 038604
Match_columns 315
No_of_seqs 257 out of 2497
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 22:10:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lz8_A Putative chaperone DNAJ 100.0 6.8E-61 2.3E-65 445.9 18.5 255 3-312 28-284 (329)
2 2q2g_A HSP40 protein, heat sho 100.0 1.1E-38 3.7E-43 273.1 19.9 145 169-314 3-148 (180)
3 3agx_A DNAJ homolog subfamily 100.0 1E-38 3.5E-43 273.3 18.7 144 169-313 2-147 (181)
4 1c3g_A Heat shock protein 40; 100.0 4.8E-37 1.6E-41 260.6 18.6 140 170-313 1-141 (170)
5 1nlt_A Protein YDJ1, mitochond 100.0 8.8E-37 3E-41 273.8 18.5 149 166-314 8-219 (248)
6 1hdj_A Human HSP40, HDJ-1; mol 99.9 6E-24 2E-28 156.7 7.5 74 1-77 1-74 (77)
7 1bq0_A DNAJ, HSP40; chaperone, 99.9 4.4E-24 1.5E-28 166.2 5.2 75 1-77 1-75 (103)
8 2ctr_A DNAJ homolog subfamily 99.9 1.7E-22 5.8E-27 152.7 6.7 74 2-78 6-79 (88)
9 2ej7_A HCG3 gene; HCG3 protein 99.9 1.7E-22 5.7E-27 150.7 6.4 73 2-75 8-80 (82)
10 2dn9_A DNAJ homolog subfamily 99.9 2.3E-22 7.9E-27 148.9 6.0 71 2-74 6-76 (79)
11 2ctp_A DNAJ homolog subfamily 99.9 3.9E-22 1.3E-26 147.3 6.1 70 2-74 6-75 (78)
12 2cug_A Mkiaa0962 protein; DNAJ 99.9 3.6E-22 1.2E-26 150.9 5.9 70 2-74 16-85 (88)
13 2lgw_A DNAJ homolog subfamily 99.9 4.4E-22 1.5E-26 153.5 5.6 75 2-77 1-75 (99)
14 2dmx_A DNAJ homolog subfamily 99.9 6.4E-22 2.2E-26 150.8 6.5 75 2-77 8-82 (92)
15 2o37_A Protein SIS1; HSP40, J- 99.8 3.9E-22 1.3E-26 151.9 5.1 72 2-78 7-78 (92)
16 2och_A Hypothetical protein DN 99.8 1.1E-21 3.7E-26 143.0 5.7 67 2-73 7-73 (73)
17 2ctw_A DNAJ homolog subfamily 99.8 2.1E-21 7.2E-26 152.4 6.0 73 2-76 16-88 (109)
18 2ctq_A DNAJ homolog subfamily 99.8 1.5E-21 5.2E-26 154.0 4.9 73 2-76 19-91 (112)
19 2yua_A Williams-beuren syndrom 99.8 3.6E-21 1.2E-25 148.5 6.3 67 2-70 16-82 (99)
20 1wjz_A 1700030A21RIK protein; 99.8 1.3E-20 4.3E-25 144.1 4.3 71 2-72 15-89 (94)
21 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 3.3E-20 1.1E-24 145.7 3.5 72 2-73 14-87 (109)
22 3apq_A DNAJ homolog subfamily 99.8 1.5E-19 5.2E-24 157.4 5.6 73 3-77 2-74 (210)
23 2ys8_A RAB-related GTP-binding 99.8 2.9E-19 9.8E-24 135.4 4.6 62 2-66 26-87 (90)
24 2l6l_A DNAJ homolog subfamily 99.7 9.9E-19 3.4E-23 145.7 6.6 71 2-72 9-83 (155)
25 1faf_A Large T antigen; J doma 99.7 9.4E-19 3.2E-23 129.2 3.3 65 3-74 11-77 (79)
26 1gh6_A Large T antigen; tumor 99.7 1.7E-19 6E-24 142.1 -0.9 64 3-72 8-73 (114)
27 3i38_A Putative chaperone DNAJ 99.7 5.4E-18 1.8E-22 132.7 7.5 62 249-311 2-63 (109)
28 1iur_A KIAA0730 protein; DNAJ 99.7 1.4E-18 4.8E-23 130.7 2.5 62 3-65 16-77 (88)
29 2pf4_E Small T antigen; PP2A, 99.7 4.3E-19 1.5E-23 149.2 -0.6 64 3-72 11-76 (174)
30 3hho_A CO-chaperone protein HS 99.7 1E-17 3.5E-22 142.0 5.1 70 2-71 3-77 (174)
31 1fpo_A HSC20, chaperone protei 99.7 9.3E-18 3.2E-22 141.8 4.1 70 3-72 1-75 (171)
32 1xao_A YDJ1, mitochondrial pro 99.7 4.4E-17 1.5E-21 130.0 7.1 62 253-314 1-64 (121)
33 1n4c_A Auxilin; four helix bun 99.7 1.8E-17 6.2E-22 140.2 3.8 65 3-67 117-182 (182)
34 3bvo_A CO-chaperone protein HS 99.7 3E-17 1E-21 142.6 5.2 68 2-69 42-114 (207)
35 2qwo_B Putative tyrosine-prote 99.6 2.9E-17 1E-21 123.9 2.6 58 3-60 33-91 (92)
36 3ag7_A Putative uncharacterize 99.6 4.3E-17 1.5E-21 126.8 2.6 60 2-62 40-104 (106)
37 2guz_A Mitochondrial import in 99.6 6.7E-17 2.3E-21 116.8 2.8 56 3-64 14-70 (71)
38 3apo_A DNAJ homolog subfamily 99.6 6E-17 2.1E-21 166.6 -0.1 75 2-78 20-94 (780)
39 3uo3_A J-type CO-chaperone JAC 99.6 1.9E-16 6.5E-21 134.8 2.1 65 2-71 10-81 (181)
40 3i38_A Putative chaperone DNAJ 99.3 8.6E-13 2.9E-17 103.0 5.1 81 166-260 8-88 (109)
41 1xao_A YDJ1, mitochondrial pro 99.3 5E-12 1.7E-16 100.6 5.8 84 166-261 3-91 (121)
42 2y4t_A DNAJ homolog subfamily 99.0 1.6E-10 5.6E-15 108.8 5.3 67 3-69 382-449 (450)
43 3agx_A DNAJ homolog subfamily 99.0 3.8E-10 1.3E-14 96.0 5.9 81 166-258 89-171 (181)
44 1c3g_A Heat shock protein 40; 99.0 3.3E-10 1.1E-14 95.3 5.1 80 166-257 83-164 (170)
45 1nlt_A Protein YDJ1, mitochond 99.0 9E-10 3.1E-14 98.2 7.7 84 166-261 158-246 (248)
46 2q2g_A HSP40 protein, heat sho 99.0 5.6E-10 1.9E-14 94.8 6.0 80 166-257 89-170 (180)
47 2guz_B Mitochondrial import in 98.9 5.3E-10 1.8E-14 78.6 4.3 50 5-60 6-58 (65)
48 3lz8_A Putative chaperone DNAJ 98.8 2E-09 6.9E-14 99.7 5.1 81 166-260 228-308 (329)
49 2ctt_A DNAJ homolog subfamily 91.5 0.011 3.8E-07 44.8 -2.8 29 170-198 2-30 (104)
50 2cqn_A Formin-binding protein 47.7 35 0.0012 23.9 5.0 57 16-73 7-64 (77)
51 2b7e_A PRE-mRNA processing pro 44.0 33 0.0011 22.8 4.1 49 18-71 3-56 (59)
52 1uzc_A Hypothetical protein FL 42.7 45 0.0015 22.9 4.9 53 14-71 11-66 (71)
53 1hry_A Human SRY; DNA, DNA-bin 30.0 73 0.0025 21.5 4.4 42 21-69 16-57 (76)
54 4a3n_A Transcription factor SO 29.7 69 0.0023 21.1 4.2 42 21-69 14-55 (71)
55 1wz6_A HMG-box transcription f 29.3 74 0.0025 21.9 4.4 42 21-69 19-60 (82)
56 1ckt_A High mobility group 1 p 28.9 1.2E+02 0.0041 20.0 5.3 42 23-69 15-56 (71)
57 1i11_A Transcription factor SO 28.2 92 0.0032 21.3 4.8 41 22-69 17-57 (81)
58 2crj_A SWI/SNF-related matrix- 27.8 1.2E+02 0.0039 21.4 5.3 42 21-69 19-60 (92)
59 1cf7_A Protein (transcription 26.6 73 0.0025 22.1 3.8 45 13-70 8-52 (76)
60 3zxf_A Galectin-7; sugar bindi 24.5 1E+02 0.0035 23.7 4.9 42 211-252 8-59 (138)
61 3f27_D Transcription factor SO 24.4 1.1E+02 0.0037 20.9 4.6 42 21-69 18-59 (83)
62 1hme_A High mobility group pro 24.3 1.4E+02 0.0049 20.0 5.1 42 21-69 18-59 (77)
63 2eqz_A High mobility group pro 23.3 1.2E+02 0.0041 21.0 4.6 43 22-69 28-70 (86)
64 1wgf_A Upstream binding factor 22.9 97 0.0033 21.8 4.1 43 21-70 32-74 (90)
65 2cs1_A PMS1 protein homolog 1; 22.9 1.1E+02 0.0036 21.7 4.3 42 21-69 19-60 (92)
66 2d7l_A WD repeat and HMG-box D 22.5 1E+02 0.0034 21.5 4.0 43 21-69 17-59 (81)
67 1sif_A Ubiquitin; hydrophobic 22.2 64 0.0022 22.5 3.0 23 272-294 6-28 (88)
68 3nm9_A HMG-D, high mobility gr 22.1 1.5E+02 0.0053 19.6 4.9 38 21-68 15-52 (73)
69 4aj5_K Spindle and kinetochore 21.0 79 0.0027 24.1 3.3 46 15-60 19-64 (123)
70 2e6o_A HMG box-containing prot 20.1 1.2E+02 0.0042 21.1 4.1 42 21-69 29-70 (87)
No 1
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=100.00 E-value=6.8e-61 Score=445.85 Aligned_cols=255 Identities=26% Similarity=0.442 Sum_probs=135.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCCCCCC
Q 038604 3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGTVPT 82 (315)
Q Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~ 82 (315)
.|||+||||+++|+.+|||+|||+||++||||++++ +++.++|++|++||++|+||.+|+.||+|+......+
T Consensus 28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~---- 100 (329)
T 3lz8_A 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE---NDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPG---- 100 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC---hHHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCC----
Confidence 699999999999999999999999999999999976 5788999999999999999999999999855421111
Q ss_pred CCCCCCCCCCCCccccCCCCCCCCCCCCCCChHHHHHHhhCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCC
Q 038604 83 SSTSTSASRAGQHYYHQRQHPNPSFRFNPRDAEDIYEELFGSESNNNSGGQRGNNHNIRGYSHREGLFRNGNCSSTASGG 162 (315)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 162 (315)
+.+ ++..+. .+ |...++.|+|++|||+. +.+ + +
T Consensus 101 -~~~------~~~~~~------~~--f~~~~f~diF~~~Fg~~------g~~----~----------------------~ 133 (329)
T 3lz8_A 101 -FGR------QRQTHE------QS--YSQQDFDDIFSSMFGQQ------AHQ----R----------------------R 133 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccc------cccccc------CC--cCCCchhhhhHhhhcCc------CCC----C----------------------C
Confidence 000 000000 01 11125679999999841 000 0 0
Q ss_pred CcccccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeE-EEEEEEEeCCCCCCCCEEEecCCCCCC-CCCCCC
Q 038604 163 AAEFKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTV-EEILTVEIKPGWKKGTKITFPEKGNQE-PGIIAA 240 (315)
Q Consensus 163 ~~~~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~-~~~~~V~Ip~G~~~G~~i~~~g~G~~~-~g~~~G 240 (315)
....+++.|+.+.|.|||+|+|.|+++.|.+.+.+|++.|+++.+ .++++|+|||||++|++|+|+|+|++. .++.+|
T Consensus 134 ~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~~gg~~G 213 (329)
T 3lz8_A 134 RQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGTPGENGGPNG 213 (329)
T ss_dssp ---CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEEEEEEEEEEECTTCCTTCEEEESSCSCCC---CCCC
T ss_pred CCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEecceEEEEeCCCCCCCCCEEEEcccccCCCCCCCCC
Confidence 011357889999999999999999999999999999998865443 678999999999999999999999996 467899
Q ss_pred cEEEEEEecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCC
Q 038604 241 DLIFIVDEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPIS 312 (315)
Q Consensus 241 DL~v~i~v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~ 312 (315)
||||+|+|++|+.|+|+|+||+++++|+|+|||||++++|+||||+ +.|+||+++++|+++||+|+|||..
T Consensus 214 DL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~-v~l~ip~gt~~g~~~rl~G~GmP~~ 284 (329)
T 3lz8_A 214 DLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQAGQRLRIKGKGLVSK 284 (329)
T ss_dssp CEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCTTCEEEETTCSCBCS
T ss_pred cEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCC-EEEEECCCCCCCCEEEEcCCCCCCC
Confidence 9999999999999999999999999999999999999999999998 7999999999999999999999964
No 2
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-38 Score=273.13 Aligned_cols=145 Identities=45% Similarity=0.765 Sum_probs=137.6
Q ss_pred CCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCC-CCCCCCCcEEEEEE
Q 038604 169 APAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVD 247 (315)
Q Consensus 169 ~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~~g~~~GDL~v~i~ 247 (315)
+.|+.+.|.|||+|+|+|+++++.+.+.+.|++| ++.+.++++|.||+||++|++|+|+|+|++ .+++.+|||||+|+
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g-~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~ 81 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHK-VRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQ 81 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTE-EEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEE
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCc-eEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEE
Confidence 6799999999999999999999999999888776 778899999999999999999999999999 68899999999999
Q ss_pred ecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCCC
Q 038604 248 EKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISKE 314 (315)
Q Consensus 248 v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~~ 314 (315)
+++|+.|+|+|+||+++++|||+||+||+++.|+||||+.+.|++|+++++|++++|+|+|||..+.
T Consensus 82 ~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~ 148 (180)
T 2q2g_A 82 TKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQ 148 (180)
T ss_dssp ECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSS
T ss_pred EEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCC
Confidence 9999999999999999999999999999999999999988999999999999999999999997643
No 3
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=100.00 E-value=1e-38 Score=273.34 Aligned_cols=144 Identities=46% Similarity=0.843 Sum_probs=132.0
Q ss_pred CCceEEEEeeehhhHhcCceeEEEEeeeE--EcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEE
Q 038604 169 APAVENLLPCSLEEIYKGAKKKMRISRNV--YDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIV 246 (315)
Q Consensus 169 ~~di~~~l~vsl~e~~~G~~k~i~~~r~~--~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i 246 (315)
++|+.+.|.|||+|+|+|+++++.+.+.+ |+|.| ++.+.++++|+||+||++|++|+|+|+|++.+++.+|||||+|
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~~c~~c~G~g-~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~g~~GDl~v~i 80 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKS-IRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVL 80 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEEEEECTTSSC-EEEEEEEEEEEECTTCCTTCEEEETTCSCCCSSSCCCCEEEEE
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEecccCCCCCce-EEEEeEEEEEEECCCccCCcEEEEeeccccCCCCCcccEEEEE
Confidence 35889999999999999999999998654 44555 7788999999999999999999999999998888999999999
Q ss_pred EecCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604 247 DEKPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK 313 (315)
Q Consensus 247 ~v~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~ 313 (315)
++++|+.|+|+|+||+++++|||+||+||+++.|+||||+++.|++|+++++|++++|+|+|||..+
T Consensus 81 ~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~ 147 (181)
T 3agx_A 81 KDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPK 147 (181)
T ss_dssp EECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSS
T ss_pred EEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCC
Confidence 9999999999999999999999999999999999999998899999999999999999999999764
No 4
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=100.00 E-value=4.8e-37 Score=260.55 Aligned_cols=140 Identities=34% Similarity=0.634 Sum_probs=131.1
Q ss_pred CceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCC-CCCCCCCcEEEEEEe
Q 038604 170 PAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQ-EPGIIAADLIFIVDE 248 (315)
Q Consensus 170 ~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~-~~g~~~GDL~v~i~v 248 (315)
+|+.+.|.|||+|+|+||++++.+.+.. +.|.+ +.++++|+||+||++|++|+|+|+|++ .+++.+|||||+|++
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~~--~~G~~--~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v 76 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKG--PHGAS--EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQE 76 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEE--TTTEE--EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEE
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEec--CCCcE--EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEE
Confidence 3789999999999999999999998873 45743 889999999999999999999999995 588899999999999
Q ss_pred cCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCCCC
Q 038604 249 KPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPISK 313 (315)
Q Consensus 249 ~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~~~ 313 (315)
++|+.|+|+|+||+++++|||+||+||+++.|+||||+++.|++|+++++|+++||+|+|||..+
T Consensus 77 ~~h~~F~R~G~DL~~~~~Isl~eAllG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~ 141 (170)
T 1c3g_A 77 KSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 141 (170)
T ss_dssp CCCSSEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSS
T ss_pred ccCCccEEeCCcEeEEEEcCHHHHhCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCC
Confidence 99999999999999999999999999999999999998899999999999999999999999754
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=100.00 E-value=8.8e-37 Score=273.77 Aligned_cols=149 Identities=35% Similarity=0.664 Sum_probs=135.2
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEc----CCC---------------------------------------
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYD----SVG--------------------------------------- 202 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~----g~G--------------------------------------- 202 (315)
++++.|+.+.|.|||+|+|+|++++|.+.+.+.| |+|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~ 87 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCH 87 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCS
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCC
Confidence 4578999999999999999999999999875431 111
Q ss_pred ------------------cEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEEEEecCCCCeeecCCCeEEE
Q 038604 203 ------------------KTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFIVDEKPHALYRRDGNDLVVG 264 (315)
Q Consensus 203 ------------------~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~i~v~~h~~f~R~g~dL~~~ 264 (315)
.++.+.++++|+|||||++|++|+|+|+|++.+++.+|||||+|++++|+.|+|+|+||+++
T Consensus 88 G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~DL~~~ 167 (248)
T 1nlt_A 88 GTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYE 167 (248)
T ss_dssp SSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETTEEEEE
T ss_pred CcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCCEEEEE
Confidence 14567799999999999999999999999998888999999999999999999999999999
Q ss_pred EeeCHHHHHcCCeEEEecCCCcEEEEecCCC--cCCCcEEEEcCCCcCCCCC
Q 038604 265 QEITLLEALTGKTLDLTTLDGRNLMIPLTDI--VKPGTEIVVPNEGMPISKE 314 (315)
Q Consensus 265 ~~Isl~eal~G~~~~i~tldG~~~~i~i~~~--~~~g~~~~i~g~G~P~~~~ 314 (315)
++|||+|||||++++|+||||+.+.|+||++ +++|++++|+|+|||..+.
T Consensus 168 ~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~ 219 (248)
T 1nlt_A 168 AEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY 219 (248)
T ss_dssp EEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSS
T ss_pred EEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCC
Confidence 9999999999999999999998899999977 9999999999999998654
No 6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.90 E-value=6e-24 Score=156.69 Aligned_cols=74 Identities=59% Similarity=1.034 Sum_probs=70.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604 1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS 77 (315)
Q Consensus 1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 77 (315)
|+.|||+||||+++|+.++||+|||+|+++||||+++. +.+.+.|++|++||++|+||.+|+.||++|.+++.+
T Consensus 1 m~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 74 (77)
T 1hdj_A 1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE---PGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKG 74 (77)
T ss_dssp CCCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC---TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCCS
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccccc
Confidence 89999999999999999999999999999999999986 568899999999999999999999999999987753
No 7
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.89 E-value=4.4e-24 Score=166.17 Aligned_cols=75 Identities=55% Similarity=0.914 Sum_probs=69.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604 1 MGFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS 77 (315)
Q Consensus 1 m~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 77 (315)
|..|||+||||+++|+.++||+|||+|+++||||+++. .+++.++|++|++||++|+||.+|+.||++|++++..
T Consensus 1 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 75 (103)
T 1bq0_A 1 AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQG--DKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQ 75 (103)
T ss_dssp CCCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTT--TCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCS
T ss_pred CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcc
Confidence 78999999999999999999999999999999999975 2568899999999999999999999999999988764
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-22 Score=152.69 Aligned_cols=74 Identities=50% Similarity=0.851 Sum_probs=69.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCC
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSG 78 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~ 78 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. +++.++|++|++||++|+||.+|+.||.+|+.++..+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 6 SGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp CCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 4799999999999999999999999999999999986 7789999999999999999999999999999887643
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.7e-22 Score=150.70 Aligned_cols=73 Identities=55% Similarity=0.987 Sum_probs=67.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGL 75 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~ 75 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||++|+||.+|+.||++|+.++
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 8 MVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE-NKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp SCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCST-THHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 4699999999999999999999999999999999986 345788999999999999999999999999998654
No 10
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=2.3e-22 Score=148.85 Aligned_cols=71 Identities=51% Similarity=0.805 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG 74 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 74 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. .+++.++|++|++||++|+||.+|+.||++|..+
T Consensus 6 ~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 6 SGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKD--DPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp CSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSS--CTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 5799999999999999999999999999999999975 2568899999999999999999999999998754
No 11
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=3.9e-22 Score=147.29 Aligned_cols=70 Identities=53% Similarity=0.878 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG 74 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 74 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.+.|++|++||++|+||.+|+.||++|..+
T Consensus 6 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 6 SGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 4689999999999999999999999999999999976 678899999999999999999999999998764
No 12
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=3.6e-22 Score=150.85 Aligned_cols=70 Identities=53% Similarity=0.879 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG 74 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 74 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+||.+|+.||++|+..
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 85 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD---PGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP 85 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS---TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence 5799999999999999999999999999999999986 568899999999999999999999999998753
No 13
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-22 Score=153.48 Aligned_cols=75 Identities=59% Similarity=1.000 Sum_probs=66.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS 77 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 77 (315)
+.|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||++|+||.+|+.||++|.+++.+
T Consensus 1 M~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~ 75 (99)
T 2lgw_A 1 MASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPD-NKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTG 75 (99)
T ss_dssp CCCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCS-CCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC----
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCc-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 3799999999999999999999999999999999986 34678899999999999999999999999999887753
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=6.4e-22 Score=150.75 Aligned_cols=75 Identities=51% Similarity=0.906 Sum_probs=68.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS 77 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 77 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. ..+.+.++|++|++||++|+||.+|+.||++|..++..
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~ 82 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPD-NKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRA 82 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSS-CSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCC
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-cHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccC
Confidence 3689999999999999999999999999999999986 33678899999999999999999999999999887654
No 15
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.9e-22 Score=151.91 Aligned_cols=72 Identities=50% Similarity=0.881 Sum_probs=66.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCC
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSG 78 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~ 78 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. ..++|++|++||++|+||.+|+.||++|.+++..+
T Consensus 7 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~ 78 (92)
T 2o37_A 7 ETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTG-----DTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG 78 (92)
T ss_dssp CCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTC-----CHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----hHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence 5789999999999999999999999999999999975 24699999999999999999999999999887653
No 16
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.84 E-value=1.1e-21 Score=143.04 Aligned_cols=67 Identities=55% Similarity=0.957 Sum_probs=61.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEE 73 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 73 (315)
..|||+||||+++|+.++||+|||+|+++||||++++ +.+.|++|++||++|+||.+|+.||++|++
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~-----~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 73 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD-----GAEQFKQISQAYEVLSDEKKRQIYDQGGEE 73 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT-----CHHHHHHHHHHHHHHTSHHHHHHHHHTC--
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC-----HHHHHHHHHHHHHHHCCHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999975 257899999999999999999999999863
No 17
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=2.1e-21 Score=152.42 Aligned_cols=73 Identities=49% Similarity=0.881 Sum_probs=67.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccC
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLK 76 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 76 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. .+++.++|++|++||++|+||.+|+.||++|..++.
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 16 GESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPD--NPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp SCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTT--CHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 5799999999999999999999999999999999985 367899999999999999999999999999987653
No 18
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-21 Score=154.01 Aligned_cols=73 Identities=25% Similarity=0.508 Sum_probs=67.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccC
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLK 76 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 76 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. .+++.++|++|++||++|+||.+|+.||++|..++.
T Consensus 19 ~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 19 TEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE--NPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp CCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTT--CSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--cHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 4799999999999999999999999999999999985 256899999999999999999999999999987653
No 19
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-21 Score=148.55 Aligned_cols=67 Identities=36% Similarity=0.604 Sum_probs=62.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLY 70 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~ 70 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. .+++.++|++|++||++|+|+.+|+.||++
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~--~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSG--SAEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSS--CSHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 5789999999999999999999999999999999975 267889999999999999999999999984
No 20
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.80 E-value=1.3e-20 Score=144.13 Aligned_cols=71 Identities=34% Similarity=0.654 Sum_probs=64.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc----chhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH----KRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE 72 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~----~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 72 (315)
..|||+||||+++|+.++||+|||+|+++||||+++.. ..+.+.++|++|++||++|+||.+|+.||.+..
T Consensus 15 ~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~ 89 (94)
T 1wjz_A 15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS 89 (94)
T ss_dssp CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 46999999999999999999999999999999998631 235788999999999999999999999998654
No 21
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.79 E-value=3.3e-20 Score=145.71 Aligned_cols=72 Identities=35% Similarity=0.614 Sum_probs=65.8
Q ss_pred CCCcccccCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-cchhHHHHHHHHHHHHHHhcCChhhhhhhcccccc
Q 038604 2 GFDYYNILKVNRNA-NEDDLKKAYKRLAMIWHPDKNPS-HKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEE 73 (315)
Q Consensus 2 ~~~~y~iLgv~~~a-s~~eIk~ayr~la~~~hPd~~~~-~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~ 73 (315)
..|||+||||+++| +.++||+|||+|+++||||+++. ...+.+.++|++|++||++|+||.+|+.||+++..
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~ 87 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH 87 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence 47999999999999 99999999999999999999974 33567899999999999999999999999998763
No 22
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.77 E-value=1.5e-19 Score=157.42 Aligned_cols=73 Identities=41% Similarity=0.818 Sum_probs=67.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCC
Q 038604 3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKS 77 (315)
Q Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~ 77 (315)
.|||+||||+++|+.++||+|||+|+++||||+++. .+++.++|++|++||++|+||.+|+.||++|+.++..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~--~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~ 74 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLED 74 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTT--CTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccc
Confidence 699999999999999999999999999999999975 2578899999999999999999999999999887653
No 23
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.9e-19 Score=135.39 Aligned_cols=62 Identities=32% Similarity=0.500 Sum_probs=57.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhh
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQI 66 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~ 66 (315)
..|||+||||+++|+.++||+|||+|+++||||+++. +.+.++|++|++||++|+|+.+|+.
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA---PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC---TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCcccccC
Confidence 4799999999999999999999999999999999976 5688999999999999999998874
No 24
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.75 E-value=9.9e-19 Score=145.73 Aligned_cols=71 Identities=34% Similarity=0.624 Sum_probs=63.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc----hhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK----RTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE 72 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~----~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 72 (315)
..|||+||||+++|+.++||+|||+|++++|||+++... +..+.++|++|++||++|+||.+|+.||..+.
T Consensus 9 ~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 9 KKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 468999999999999999999999999999999997532 23578999999999999999999999998764
No 25
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.73 E-value=9.4e-19 Score=129.20 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=58.1
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccc
Q 038604 3 FDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEG 74 (315)
Q Consensus 3 ~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 74 (315)
.++|+||||+++ |+.++||+|||+|+++||||++++ .++|++|++||++|+|+.+|.. +.||..+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~------~~~f~~i~~AYe~L~~~~~r~~-~~~g~~~ 77 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEVYNLR-MNLGGTG 77 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHHHHHT-TCCSSCC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHHhhHHHHHH-HhcCCcc
Confidence 368999999999 999999999999999999999865 4789999999999999999987 4566654
No 26
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.73 E-value=1.7e-19 Score=142.08 Aligned_cols=64 Identities=27% Similarity=0.419 Sum_probs=60.0
Q ss_pred CCcccccCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604 3 FDYYNILKVNRNANE--DDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE 72 (315)
Q Consensus 3 ~~~y~iLgv~~~as~--~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 72 (315)
.+||+||||+++|+. ++||+|||+||+++|||++++ .++|++|++||++|+||.+|+.||.+|.
T Consensus 8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 579999999999999 999999999999999999976 3689999999999999999999999875
No 27
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.73 E-value=5.4e-18 Score=132.74 Aligned_cols=62 Identities=18% Similarity=0.347 Sum_probs=58.8
Q ss_pred cCCCCeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCCcCCCcEEEEcCCCcCC
Q 038604 249 KPHALYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDIVKPGTEIVVPNEGMPI 311 (315)
Q Consensus 249 ~~h~~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~~~~g~~~~i~g~G~P~ 311 (315)
++|+.|+|+|+||+++++|||+||++|+++.|+||||+ +.|+||+++++|+++||+|+|||.
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~-~~v~ip~g~~~G~~~rl~G~G~p~ 63 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKES-ILLTVPPGSQAGQRLRIKGKGLVS 63 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSC-EEEEECTTCCTTCEEEETTCSCBC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCC-EEEeeCCCcCcCeEEEECCccCCC
Confidence 68999999999999999999999999999999999995 999999999999999999999997
No 28
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.71 E-value=1.4e-18 Score=130.66 Aligned_cols=62 Identities=26% Similarity=0.432 Sum_probs=56.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhh
Q 038604 3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQ 65 (315)
Q Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 65 (315)
.++|+||||+++|+.+|||+|||+|+++||||++++ +.+.+.++|++|++||++|+|...|.
T Consensus 16 ~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~-~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSS-CHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-chHHHHHHHHHHHHHHHHHHhhcccc
Confidence 478999999999999999999999999999999987 33568999999999999999987774
No 29
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.71 E-value=4.3e-19 Score=149.22 Aligned_cols=64 Identities=27% Similarity=0.409 Sum_probs=57.4
Q ss_pred CCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604 3 FDYYNILKVNRNAN--EDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE 72 (315)
Q Consensus 3 ~~~y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 72 (315)
.|||+||||+++|+ .++||+|||+||+++|||++++ +++|++|++||++|+||.+|+.||++|.
T Consensus 11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 47999999999998 6999999999999999999976 3689999999999999999999999996
No 30
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.69 E-value=1e-17 Score=141.98 Aligned_cols=70 Identities=24% Similarity=0.409 Sum_probs=61.9
Q ss_pred CCCcccccCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCcch---hHHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 038604 2 GFDYYNILKVNRNAN--EDDLKKAYKRLAMIWHPDKNPSHKR---TEAEAKFKQISEAYDVLSDPQKRQIYDLYG 71 (315)
Q Consensus 2 ~~~~y~iLgv~~~as--~~eIk~ayr~la~~~hPd~~~~~~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 71 (315)
..|||+||||+++++ .++||+|||+|+++||||+++.... ..+.++|+.|++||++|+||.+|+.||...
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 77 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLSL 77 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHc
Confidence 479999999999998 9999999999999999999976332 237789999999999999999999999843
No 31
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.69 E-value=9.3e-18 Score=141.79 Aligned_cols=70 Identities=24% Similarity=0.389 Sum_probs=62.3
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhccccc
Q 038604 3 FDYYNILKVNRNA--NEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDLYGE 72 (315)
Q Consensus 3 ~~~y~iLgv~~~a--s~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 72 (315)
+|||+||||++++ +.++||+|||+|+++||||+++... +..+.++|+.|++||++|+||.+|+.||....
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~ 75 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH 75 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhc
Confidence 4899999999999 9999999999999999999997632 23467899999999999999999999998643
No 32
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.4e-17 Score=130.00 Aligned_cols=62 Identities=37% Similarity=0.636 Sum_probs=56.2
Q ss_pred CeeecCCCeEEEEeeCHHHHHcCCeEEEecCCCcEEEEecCCC--cCCCcEEEEcCCCcCCCCC
Q 038604 253 LYRRDGNDLVVGQEITLLEALTGKTLDLTTLDGRNLMIPLTDI--VKPGTEIVVPNEGMPISKE 314 (315)
Q Consensus 253 ~f~R~g~dL~~~~~Isl~eal~G~~~~i~tldG~~~~i~i~~~--~~~g~~~~i~g~G~P~~~~ 314 (315)
.|+|+|+||+++++|||++||||+++.|+||||+++.|+||++ +++|+++||+|+|||..+.
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~ 64 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKY 64 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC----
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCC
Confidence 4999999999999999999999999999999998899999977 9999999999999997643
No 33
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.67 E-value=1.8e-17 Score=140.19 Aligned_cols=65 Identities=17% Similarity=0.399 Sum_probs=58.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcch-hHHHHHHHHHHHHHHhcCChhhhhhh
Q 038604 3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKR-TEAEAKFKQISEAYDVLSDPQKRQIY 67 (315)
Q Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~y 67 (315)
.|||+||||+++|+.++||+|||+|+++||||+++.... ..+.++|++|++||++|+|+.+|+.|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 589999999999999999999999999999999975221 23889999999999999999999987
No 34
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.67 E-value=3e-17 Score=142.57 Aligned_cols=68 Identities=26% Similarity=0.504 Sum_probs=60.6
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 2 GFDYYNILKVNRN--ANEDDLKKAYKRLAMIWHPDKNPSHK---RTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 2 ~~~~y~iLgv~~~--as~~eIk~ayr~la~~~hPd~~~~~~---~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
..|||+||||+++ ++.++||+|||+|+++||||+++... +..+.++|++|++||++|+||.+|+.||.
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~ 114 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLL 114 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4699999999986 79999999999999999999997532 23467899999999999999999999996
No 35
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.65 E-value=2.9e-17 Score=123.93 Aligned_cols=58 Identities=16% Similarity=0.338 Sum_probs=51.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHHHHHHhcCC
Q 038604 3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSD 60 (315)
Q Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~~~f~~i~~Ay~~L~d 60 (315)
.++|++|||++.||.+|||+|||+||++||||++++.. ...+.++|++|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999999999999998632 12588899999999999964
No 36
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.64 E-value=4.3e-17 Score=126.81 Aligned_cols=60 Identities=25% Similarity=0.439 Sum_probs=52.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----chhHHHHHHHHHHHHHHhcCChh
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSH-----KRTEAEAKFKQISEAYDVLSDPQ 62 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~-----~~~~~~~~f~~i~~Ay~~L~d~~ 62 (315)
+.|||+||+++. ||.++||+|||+||++||||+++.. .+..|.++|++|++||++|+|+.
T Consensus 40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 469999999996 9999999999999999999998631 12257899999999999999975
No 37
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.7e-17 Score=116.81 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=50.8
Q ss_pred CCcccccCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhh
Q 038604 3 FDYYNILKVNR-NANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKR 64 (315)
Q Consensus 3 ~~~y~iLgv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r 64 (315)
.++|+||||++ +|+.++||+|||+|+++||||++.+ .++|++|++||++|+++..|
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~------~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS------PFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC------HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHhhhhhc
Confidence 37899999999 7999999999999999999999755 45899999999999988665
No 38
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.60 E-value=6e-17 Score=166.65 Aligned_cols=75 Identities=40% Similarity=0.799 Sum_probs=40.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccccccccCCC
Q 038604 2 GFDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSG 78 (315)
Q Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~ 78 (315)
+.|||+||||+++|+.++||+|||+||++||||+++. .+++.++|++|++||++|+||.+|+.||++|++++...
T Consensus 20 ~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~--~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 20 DQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPN--NPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp ---CHHHHTCCTTCCHHHHHHHHCC-------------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 5799999999999999999999999999999999975 26788999999999999999999999999999887643
No 39
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.59 E-value=1.9e-16 Score=134.77 Aligned_cols=65 Identities=26% Similarity=0.500 Sum_probs=58.6
Q ss_pred CCCccccc------CCCC-CCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 038604 2 GFDYYNIL------KVNR-NANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYG 71 (315)
Q Consensus 2 ~~~~y~iL------gv~~-~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 71 (315)
..|||+|| |+.+ +|+.++||+|||+|+++||||+++. +.++|++|++||++|+||.+|+.||...
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 46999999 4665 8999999999999999999999975 4578999999999999999999999854
No 40
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=8.6e-13 Score=103.05 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=69.3
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI 245 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~ 245 (315)
.+.+.|+++.++|||.||+.|++++|... +| .++|+||+|+++|++++|+|+|++..+ .+|||||+
T Consensus 8 ~R~G~DL~~~~~Isl~eAl~G~~i~v~tl------dG-------~~~v~ip~g~~~G~~~rl~G~G~p~~~-~~GDL~v~ 73 (109)
T 3i38_A 8 DIVGHNLEIVLPLAPWEAALGAKVTVPTL------KE-------SILLTVPPGSQAGQRLRIKGKGLVSKT-HTGDLFAV 73 (109)
T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEECCS------SS-------CEEEEECTTCCTTCEEEETTCSCBCSS-CBCCEEEE
T ss_pred EEECCEEEEEEEcCHHHHhCCCEEEEEcC------CC-------CEEEeeCCCcCcCeEEEECCccCCCCC-CCcCEEEE
Confidence 46788999999999999999998887764 56 579999999999999999999998744 78999999
Q ss_pred EEecCCCCeeecCCC
Q 038604 246 VDEKPHALYRRDGND 260 (315)
Q Consensus 246 i~v~~h~~f~R~g~d 260 (315)
|+|.-+.....+..+
T Consensus 74 ~~V~~P~~Ls~~q~~ 88 (109)
T 3i38_A 74 IKIVMPTKPDEKARE 88 (109)
T ss_dssp EEECCCSSCCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 999988766554433
No 41
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=99.26 E-value=5e-12 Score=100.60 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=68.1
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCC--CCCCCEEEecCCCCCCCCC-CCCcE
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPG--WKKGTKITFPEKGNQEPGI-IAADL 242 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~g~-~~GDL 242 (315)
.|++.||++.++|||.+|+.|+++.|... +| +.++|+||+| +++|++++|+|+|++..+. .+|||
T Consensus 3 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL 70 (121)
T 1xao_A 3 KRDGDDLVYEAEIDLLTAIAGGEFALEHV------SG------DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNL 70 (121)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT------TS------CEEEEEECTTSCCCTTCEEEETTCSCC------CCCE
T ss_pred eEECCeEEEEEEcCHHHHhCCCEEEEecC------CC------CEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCE
Confidence 35788999999999999999998888754 67 3689999999 9999999999999985433 68999
Q ss_pred EEEEEecCCCC--eeecCCCe
Q 038604 243 IFIVDEKPHAL--YRRDGNDL 261 (315)
Q Consensus 243 ~v~i~v~~h~~--f~R~g~dL 261 (315)
||++.|.-+.. ++.+..++
T Consensus 71 ~V~~~V~~P~~~~ls~~q~~~ 91 (121)
T 1xao_A 71 IIKFTIKFPENHFTSEENLKK 91 (121)
T ss_dssp EEEEEEECCCTTCSCHHHHHH
T ss_pred EEEEEEECCCCCCCCHHHHHH
Confidence 99999998876 55554433
No 42
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.02 E-value=1.6e-10 Score=108.75 Aligned_cols=67 Identities=46% Similarity=0.814 Sum_probs=56.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-hhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 3 FDYYNILKVNRNANEDDLKKAYKRLAMIWHPDKNPSHK-RTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 3 ~~~y~iLgv~~~as~~eIk~ayr~la~~~hPd~~~~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.++|.+||+.++++.++|+++|+++++++|||+.+... +..+.++|++|++||++|+|+++|..||.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 48999999999999999999999999999999997621 35688999999999999999999999996
No 43
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=98.99 E-value=3.8e-10 Score=95.97 Aligned_cols=81 Identities=19% Similarity=0.139 Sum_probs=68.8
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC--CCCCcEE
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG--IIAADLI 243 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g--~~~GDL~ 243 (315)
.+.+.||+++++|||.||+.|++++|... +| +.++|.||+|+++|++++|+|+|.+..+ +.+||||
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~ 156 (181)
T 3agx_A 89 KRDGSDVIYPARISLREALCGCTVNVPTL------DG------RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLI 156 (181)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT------TS------CEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEE
T ss_pred eeeCCcEEEEEEcCHHHHhCCCEEEeECC------CC------CEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEE
Confidence 46789999999999999999998888765 67 3688999999999999999999998542 4579999
Q ss_pred EEEEecCCCCeeecC
Q 038604 244 FIVDEKPHALYRRDG 258 (315)
Q Consensus 244 v~i~v~~h~~f~R~g 258 (315)
|+++|.-+..++.+.
T Consensus 157 V~~~V~~P~~ls~~q 171 (181)
T 3agx_A 157 IEFEVIFPERIPQTS 171 (181)
T ss_dssp EEEEEECCSCCCHHH
T ss_pred EEEEEECCCCCCHHH
Confidence 999999887655433
No 44
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A
Probab=98.98 E-value=3.3e-10 Score=95.34 Aligned_cols=80 Identities=18% Similarity=0.179 Sum_probs=68.1
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC--CCCCcEE
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG--IIAADLI 243 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g--~~~GDL~ 243 (315)
.+.+.||+++++|||.||+.|++++|... +| +.++|.||+|+++|++++|+|+|.+..+ +.+||||
T Consensus 83 ~R~G~DL~~~~~Isl~eAllG~~~~v~tl------dG------~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~ 150 (170)
T 1c3g_A 83 KRDGDDLIYTLPLSFKESLLGFSKTIQTI------DG------RTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLI 150 (170)
T ss_dssp EEETTEEEEEECCBHHHHHHCEEEEEECS------SS------CEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEE
T ss_pred EEeCCcEeEEEEcCHHHHhCCCeEEeeCC------CC------CEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEE
Confidence 46789999999999999999999888765 67 3688999999999999999999998532 3579999
Q ss_pred EEEEecCCCCeeec
Q 038604 244 FIVDEKPHALYRRD 257 (315)
Q Consensus 244 v~i~v~~h~~f~R~ 257 (315)
|+++|.-+..++.+
T Consensus 151 V~~~V~~P~~Ls~~ 164 (170)
T 1c3g_A 151 VKYKVDYPISLNDA 164 (170)
T ss_dssp EEECCBCCSSCCTT
T ss_pred EEEEEECCCCCCHH
Confidence 99999988765543
No 45
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=98.97 E-value=9e-10 Score=98.23 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=66.2
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCC--CCCCCEEEecCCCCCCCCC-CCCcE
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPG--WKKGTKITFPEKGNQEPGI-IAADL 242 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G--~~~G~~i~~~g~G~~~~g~-~~GDL 242 (315)
.|.+.||+++++|||.||+.|.+++|... +| +.++|+||+| +++|++++|+|+|.+.... ..|||
T Consensus 158 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL 225 (248)
T 1nlt_A 158 KRDGDDLVYEAEIDLLTAIAGGEFALEHV------SG------DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNL 225 (248)
T ss_dssp EEETTEEEEEEEEEHHHHHHCBCCEEECS------SS------CEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCE
T ss_pred eeeCCEEEEEEEeCHHHHhcCCEEEEeCC------CC------CEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCE
Confidence 46789999999999999999999988765 67 3689999999 9999999999999985332 57999
Q ss_pred EEEEEecCCCC--eeecCCCe
Q 038604 243 IFIVDEKPHAL--YRRDGNDL 261 (315)
Q Consensus 243 ~v~i~v~~h~~--f~R~g~dL 261 (315)
||+|.|.-+.. ++.+...|
T Consensus 226 ~V~~~V~~P~~~~Ls~~q~~~ 246 (248)
T 1nlt_A 226 IIKFTIKDPENHFTSEENLKK 246 (248)
T ss_dssp EEEEEEECCC-----------
T ss_pred EEEEEEECCCCCCCCHHHHHh
Confidence 99999998876 66555544
No 46
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II}
Probab=98.97 E-value=5.6e-10 Score=94.83 Aligned_cols=80 Identities=15% Similarity=0.034 Sum_probs=68.2
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCC--CCCCcEE
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPG--IIAADLI 243 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g--~~~GDL~ 243 (315)
.+.+.||+++++|||.||+.|++++|... +| +.++|.||+|+++|++++|+|+|.+..+ +.+||||
T Consensus 89 ~R~G~DL~~~~~Isl~eAllG~~i~v~tl------dG------~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~ 156 (180)
T 2q2g_A 89 TRDDCHLIMKVTIPLVRALTGFTCPVTTL------DN------RNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLI 156 (180)
T ss_dssp EEETTEEEEEEEEEHHHHHHCEEEEEECT------TC------CEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEE
T ss_pred EEcCCEEEEEEEcCHHHHhCCCEEEeeCC------CC------CEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEE
Confidence 46789999999999999999998888765 67 3688999999999999999999998532 4579999
Q ss_pred EEEEecCCCCeeec
Q 038604 244 FIVDEKPHALYRRD 257 (315)
Q Consensus 244 v~i~v~~h~~f~R~ 257 (315)
|+++|.-+..++.+
T Consensus 157 V~~~V~~P~~Ls~~ 170 (180)
T 2q2g_A 157 LEFDICFPKSLTPE 170 (180)
T ss_dssp EEEEEECCSCCCHH
T ss_pred EEEEEECCCCCCHH
Confidence 99999988765543
No 47
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.95 E-value=5.3e-10 Score=78.57 Aligned_cols=50 Identities=18% Similarity=0.164 Sum_probs=45.0
Q ss_pred cccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 038604 5 YYNILKVNRN---ANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60 (315)
Q Consensus 5 ~y~iLgv~~~---as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d 60 (315)
=|.||||++. ++.++|+++||+|+..+|||+..+ .....+|++|++.|..
T Consensus 6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS------~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS------FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC------HHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHHH
Confidence 3789999999 999999999999999999999876 5678889999999864
No 48
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.83 E-value=2e-09 Score=99.68 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=68.9
Q ss_pred cccCCceEEEEeeehhhHhcCceeEEEEeeeEEcCCCcEEeEEEEEEEEeCCCCCCCCEEEecCCCCCCCCCCCCcEEEE
Q 038604 166 FKKAPAVENLLPCSLEEIYKGAKKKMRISRNVYDSVGKTRTVEEILTVEIKPGWKKGTKITFPEKGNQEPGIIAADLIFI 245 (315)
Q Consensus 166 ~~~~~di~~~l~vsl~e~~~G~~k~i~~~r~~~~g~G~~~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~g~~~GDL~v~ 245 (315)
.+.+.||.++++|+|.||+.|++++|... +| .++|+||+|+++|++++|+|+|.+.. ..+|||||+
T Consensus 228 ~R~G~DL~~~~~Isl~eAllG~~v~VptL------dG-------~v~l~ip~gt~~g~~~rl~G~GmP~~-~~rGDL~v~ 293 (329)
T 3lz8_A 228 DIVGHNLEIVLPLAPWEAALGAKVTVPTL------KE-------SILLTVPPGSQAGQRLRIKGKGLVSK-THTGDLFAV 293 (329)
T ss_dssp EEETTEEEEEEEECHHHHHHCEEEEECCS------SS-------CEEEEECTTCCTTCEEEETTCSCBCS-SCBCCEEEE
T ss_pred EEcCCcEEEEEECCHHHHcCCCeEEEECC------CC-------CEEEEECCCCCCCCEEEEcCCCCCCC-CCCCCEEEE
Confidence 46789999999999999999998888765 67 36899999999999999999999855 468999999
Q ss_pred EEecCCCCeeecCCC
Q 038604 246 VDEKPHALYRRDGND 260 (315)
Q Consensus 246 i~v~~h~~f~R~g~d 260 (315)
|.|.-++....+...
T Consensus 294 ~~V~~P~~l~~~q~~ 308 (329)
T 3lz8_A 294 IKIVMPTKPDEKARE 308 (329)
T ss_dssp EEECCCSSCCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 999988766544433
No 49
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.50 E-value=0.011 Score=44.82 Aligned_cols=29 Identities=10% Similarity=0.116 Sum_probs=25.0
Q ss_pred CceEEEEeeehhhHhcCceeEEEEeeeEE
Q 038604 170 PAVENLLPCSLEEIYKGAKKKMRISRNVY 198 (315)
Q Consensus 170 ~di~~~l~vsl~e~~~G~~k~i~~~r~~~ 198 (315)
.++.+.|.|||+|||+|++++|.+.+.+.
T Consensus 2 ~~~~~~l~vslee~~~G~~~~i~~~~~~~ 30 (104)
T 2ctt_A 2 SSGSSGMELTFNQAAKGVNKEFTVNIMDT 30 (104)
T ss_dssp CCCCCCCCCCCSSCCSSSCTTCCSSCCEE
T ss_pred CceEEEEEEEHHHHcCCCEEEEEeeeeeE
Confidence 46778899999999999999998877665
No 50
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=47.68 E-value=35 Score=23.89 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCC-hhhhhhhcccccc
Q 038604 16 NEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD-PQKRQIYDLYGEE 73 (315)
Q Consensus 16 s~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d-~~~r~~yD~~G~~ 73 (315)
-...++.+|+.+.+...|.......=.++..+|..- .+|..+.+ ..++.+|+.|-..
T Consensus 7 r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~-~~fkav~~E~eR~~lFeeYi~~ 64 (77)
T 2cqn_A 7 GMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKE-PAFEDITLESERKRIFKDFMHV 64 (77)
T ss_dssp SHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTS-HHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccC-HHHHhcCCHHHHHHHHHHHHHH
Confidence 456788999999988888777653434455555544 48999977 5788888887643
No 51
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=43.97 E-value=33 Score=22.79 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHH---HHHHHhcCC-h-hhhhhhcccc
Q 038604 18 DDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQI---SEAYDVLSD-P-QKRQIYDLYG 71 (315)
Q Consensus 18 ~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i---~~Ay~~L~d-~-~~r~~yD~~G 71 (315)
+|..+||.+|.+...-|..=+ -++..+.| ..-|.+|.| | .+++.|+.|-
T Consensus 3 eEae~aF~~lL~~~~V~s~ws-----weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~ 56 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS-----FSRIISELGTRDPRYWMVDDDPLWKKEMFEKYL 56 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC-----HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc-----HHHHHHHhccCCCccccccCCHHHHHHHHHHHH
Confidence 577899999999876555432 34556666 348999997 5 5778888763
No 52
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=42.74 E-value=45 Score=22.93 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHH--HHHHhcCC-hhhhhhhcccc
Q 038604 14 NANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQIS--EAYDVLSD-PQKRQIYDLYG 71 (315)
Q Consensus 14 ~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~--~Ay~~L~d-~~~r~~yD~~G 71 (315)
.+|.+|.+++|++|...++-+-... =.+....|. .-|.+|.+ ..+++.|+.|-
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~t-----We~~~~~i~~DpRY~al~~~~eRk~~F~ey~ 66 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNAS-----WEQAMKMIINDPRYSALAKLSEKKQAFNAYK 66 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCC-----HHHHHHHHHTSGGGGGCSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCC-----HHHHHHHHccCccccccCCHHHHHHHHHHHH
Confidence 5789999999999999886433322 122223333 26888876 46777777664
No 53
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=30.00 E-value=73 Score=21.45 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.... +..+.|.+.|..|++.++....+.
T Consensus 16 ~~~~r~~~~~~~p~~~~~-------eisk~lg~~Wk~ls~~eK~~y~~~ 57 (76)
T 1hry_A 16 SRDQRRKMALENPRMRNS-------EISKQLGYQWKMLTEAEKWPFFQE 57 (76)
T ss_dssp HHHHHHHHHHHCSCCSSS-------HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCHH-------HHHHHHHhHHHhCCHHHHHHHHHH
Confidence 345666677778987643 456789999999997766554443
No 54
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=29.65 E-value=69 Score=21.14 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 14 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~~y~~~ 55 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-------NAELSKMLGKSWKALTLAEKRPFVEE 55 (71)
T ss_dssp HHHHHHHHHTTCTTSC-------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456666777788765 24677889999999997766654443
No 55
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=29.35 E-value=74 Score=21.86 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.... +..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~~~-------eisk~lg~~Wk~ls~~eK~~y~~~ 60 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLDNR-------GATKILADWWAVLDPKEKQKYTDM 60 (82)
T ss_dssp HHHHHHHHHHHCSSSCTT-------HHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHH-------HHHHHHHHHHhhCCHHHHHHHHHH
Confidence 345667777788986543 567789999999997766555544
No 56
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=28.95 E-value=1.2e+02 Score=19.95 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 23 AYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 23 ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
..|...+.-||+...+ ..+..+.|.+.|..|++.++....+.
T Consensus 15 ~~r~~~~~~~p~~~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~~ 56 (71)
T 1ckt_A 15 TCREEHKKKHPDASVN-----FSEFSKKCSERWKTMSAKEKGKFEDM 56 (71)
T ss_dssp HHHHHHHHHCTTCCCC-----HHHHHHHHHHHHHTCCTTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCCc-----HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 4455566778886532 24677889999999998876655443
No 57
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=28.24 E-value=92 Score=21.28 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 22 KAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 22 ~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
+.+|...+.-||+.. ..+..+.|.+.|..|++.++...++.
T Consensus 17 ~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~y~~~ 57 (81)
T 1i11_A 17 KDERRKILQAFPDMH-------NSNISKILGSRWKAMTNLEKQPYYEE 57 (81)
T ss_dssp HHHHHHHHTTCSSCC-------HHHHHHHHHHHHTTSCSGGGHHHHHH
T ss_pred HHHHHHHHHHCCCCC-------HHHHHHHHHhhhhhCCHHHHHHHHHH
Confidence 445666666677654 34677889999999998877665554
No 58
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=27.84 E-value=1.2e+02 Score=21.45 Aligned_cols=42 Identities=17% Similarity=0.185 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~Y~~~ 60 (92)
T 2crj_A 19 LNERREQIRTRHPDLP-------FPEITKMLGAEWSKLQPAEKQRYLDE 60 (92)
T ss_dssp HHHHHHHHHHHCTTCC-------HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456666777788765 34677889999999998877665554
No 59
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=26.59 E-value=73 Score=22.13 Aligned_cols=45 Identities=27% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604 13 RNANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLY 70 (315)
Q Consensus 13 ~~as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~ 70 (315)
.+.|...+.+.|-++... +|+..- .+++|-+.|.-.++|+.||-.
T Consensus 8 ~~~SL~~lt~kFi~l~~~-~~~~~i------------~l~~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 8 HEKSLGLLTTKFVSLLQE-AKDGVL------------DLKLAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp TTTCHHHHHHHHHHHHHH-SSTTEE------------EHHHHHHHTTTCCTHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHh-CCCCcC------------cHHHHHHHhCCccceehhhHH
Confidence 466888899999888765 343321 267777777655799999963
No 60
>3zxf_A Galectin-7; sugar binding protein; 1.38A {Homo sapiens} SCOP: b.29.1.3 PDB: 1bkz_A 2gal_A* 3gal_A* 4gal_A* 5gal_A* 3zxe_A*
Probab=24.46 E-value=1e+02 Score=23.66 Aligned_cols=42 Identities=10% Similarity=0.106 Sum_probs=28.2
Q ss_pred EEEEeCCCCCCCCEEEecCCCCCCCC----------CCCCcEEEEEEecCCC
Q 038604 211 LTVEIKPGWKKGTKITFPEKGNQEPG----------IIAADLIFIVDEKPHA 252 (315)
Q Consensus 211 ~~V~Ip~G~~~G~~i~~~g~G~~~~g----------~~~GDL~v~i~v~~h~ 252 (315)
++-.||.|+..|+.|++.|.=..... ....|+.++++...+.
T Consensus 8 ~~~~i~~gl~~G~~i~I~G~v~~~a~rF~Inl~~g~~~~~dialHfnpRf~~ 59 (138)
T 3zxf_A 8 HKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRLDT 59 (138)
T ss_dssp EEEECTTCCCSSEEEEEEEEECTTCCBEEEEEESSSSTTCCEEEEEEEETTT
T ss_pred EEeecCCCCCCCCEEEEEEEECCCCCEEEEEeeeCCCCCCCEEEEEEEEcCC
Confidence 56678999999999999986433211 1235777777776543
No 61
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=24.38 E-value=1.1e+02 Score=20.94 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-------NAELSKMLGKSWKALTLAEKRPFVEE 59 (83)
T ss_dssp HHHHHHHHHHHCSSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4556777777888765 24677889999999997766655443
No 62
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=24.28 E-value=1.4e+02 Score=19.95 Aligned_cols=42 Identities=14% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 18 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~~eK~~y~~~ 59 (77)
T 1hme_A 18 CSEYRPKIKGEHPGLS-------IGDVAKKLGEMWNNTAADDKQPYEKK 59 (77)
T ss_dssp HHHHHHHHHHHCTTCC-------HHHHHHHHHHHHHHSCGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445566666788754 35677889999999997766554443
No 63
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.30 E-value=1.2e+02 Score=21.03 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 22 KAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 22 ~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
+..|...+.-||+...+ ..+..+.|.+.|..|++.++....+.
T Consensus 28 ~~~r~~~k~~~p~~~~~-----~~eisk~lg~~Wk~ls~~eK~~y~~~ 70 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVN-----FAEFSKKCSERWKTMSGKEKSKFDEM 70 (86)
T ss_dssp HHHHHHHHHHCTTSCCC-----HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCc-----HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44556666778886532 24677889999999997776655443
No 64
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.88 E-value=97 Score=21.78 Aligned_cols=43 Identities=12% Similarity=0.122 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhccc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDLY 70 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~ 70 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+..
T Consensus 32 ~~~~r~~~k~~~P~~~-------~~eisk~lg~~Wk~ls~eeK~~Y~~~A 74 (90)
T 1wgf_A 32 SEEKRRQLQEERPELS-------ESELTRLLARMWNDLSEKKKAKYKARE 74 (90)
T ss_dssp HHHTHHHHHHHCTTSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455666777788754 346778899999999987766655553
No 65
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.85 E-value=1.1e+02 Score=21.65 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+..|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 19 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~eeK~~y~~~ 60 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-------LEDATLQIEELWKTLSEEEKLKYEEK 60 (92)
T ss_dssp HHHHHHHHHHHCCSSC-------HHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455666677788764 24677889999999997776655544
No 66
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.49 E-value=1e+02 Score=21.47 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.. + ..+..+.+.+.|..|++.++....+.
T Consensus 17 ~~e~R~~ik~~~P~~~-~-----~~eisK~lge~Wk~ls~eeK~~y~~~ 59 (81)
T 2d7l_A 17 LEENRSNILSDNPDFS-D-----EADIIKEGMIRFRVLSTEERKVWANK 59 (81)
T ss_dssp HHHHHHHHHHHCTTCC-S-----HHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCc-h-----hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556777788899875 1 24677889999999998877665554
No 67
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=22.19 E-value=64 Score=22.52 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=16.7
Q ss_pred HHcCCeEEEecCCCcEEEEecCC
Q 038604 272 ALTGKTLDLTTLDGRNLMIPLTD 294 (315)
Q Consensus 272 al~G~~~~i~tldG~~~~i~i~~ 294 (315)
.|.|..+.|.+++|+++.|.+++
T Consensus 6 ~~~~~~i~v~~~~G~~~~l~v~~ 28 (88)
T 1sif_A 6 HLQGLQLFIKTLTGKTFTVEMEP 28 (88)
T ss_dssp ----CEEEEEETTSCEEEEECCT
T ss_pred cccceEEEEEeCCCCEEEEEECC
Confidence 36799999999999988888753
No 68
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=22.07 E-value=1.5e+02 Score=19.62 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYD 68 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD 68 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++ |..|.
T Consensus 15 ~~~~r~~~~~~~p~~~-------~~eisk~lg~~Wk~ls~---K~~y~ 52 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-------VTEVAKRGGELWRAMKD---KSEWE 52 (73)
T ss_dssp HHHHHHHHHHHSSSCC-------HHHHHHHHHHHHHHCSC---CHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHHcCCc---hHHHH
Confidence 3455666777888765 24677889999999987 65554
No 69
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.02 E-value=79 Score=24.14 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCC
Q 038604 15 ANEDDLKKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSD 60 (315)
Q Consensus 15 as~~eIk~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d 60 (315)
++.+.|...-..-.++.|||....+|.....+..+.|.+-|.+|..
T Consensus 19 sDLdyiq~RLe~Ef~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~ 64 (123)
T 4aj5_K 19 SDLDYIQYRLEYEIKTNHPDSASEKNPVTLLKELSVIKSRYQTLYA 64 (123)
T ss_dssp HHHHHHHHHHHHHHHHCC-----CCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCccccccChHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666788999987555545677778888888887763
No 70
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=20.06 E-value=1.2e+02 Score=21.06 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCCcchhHHHHHHHHHHHHHHhcCChhhhhhhcc
Q 038604 21 KKAYKRLAMIWHPDKNPSHKRTEAEAKFKQISEAYDVLSDPQKRQIYDL 69 (315)
Q Consensus 21 k~ayr~la~~~hPd~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~ 69 (315)
.+.+|...+.-||+.. ..+..+.|.+.|..|++.++....+.
T Consensus 29 ~~~~r~~~~~~~P~~~-------~~eisk~lg~~Wk~ls~eeK~~y~~~ 70 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGKD-------NRAISVILGDRWKKMKNEERRMYTLE 70 (87)
T ss_dssp HHHTHHHHHHHCTTSC-------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-------HHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 3455666777788754 24667789999999997766554443
Done!