BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038605
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 201/484 (41%), Gaps = 58/484 (11%)
Query: 27 LADLEQMSLWENNLRGEIP-LEIGNLQNLEELDLRQNKLVGIVPAAIFNVXXXXXXXXXX 85
L L+ +SL EN GEIP G L LDL N G VP +
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 86 XXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFN-ASKLSILELVGNSFSG-FIPN 143
+++ L+ L L N F+G +P + N ++ L L+L N+FSG +PN
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 144 TFGNLRN-LERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNL 202
N +N L+ L LQ+N T P +LSNC L + LS N L G + +S+G+L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPP-----TLSNCSELVSLHLSFNYLSGTI-PSSLGSL 438
Query: 203 SHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDN 262
S ++ L N + G I +E+ + L T+ L N L G IP +N
Sbjct: 439 SKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 263 KLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELT-SIPLTFWN 321
+L G IP I RL+ L L+L N SG+IPA G+ +L L L +N +IP +
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 322 LKDILQ----------------------------------------------LNISSNYF 335
+ NI+S +
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 336 TGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLI 395
G N ++ +D S N SG IP EIG + L L LG+N + GSIPD GDL
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 396 XXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL 455
G IP ++ L+ L +++LS N L G IP G F F F N L
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 456 CGSP 459
CG P
Sbjct: 738 CGYP 741
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 165/368 (44%), Gaps = 37/368 (10%)
Query: 28 ADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVXXXXXXXXXXXX 87
+LE + + NN IP +G+ L+ LD+ NKL G AI
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI---STCTELKLLNIS 252
Query: 88 XXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNAS-KLSILELVGNSFSGFIPNTFG 146
I + L +L+ LSL N F G IP F+ A L+ L+L GN F G +P FG
Sbjct: 253 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Query: 147 -------------------------NLRNLERLNLQDNYLTSSTPELSFLSSLSN-CKSL 180
+R L+ L+L N + PE SL+N SL
Sbjct: 313 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-----SLTNLSASL 367
Query: 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKL 240
+ LS+N G + N ++L+ + N +G I +SN + L +++L N L
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 241 NGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLI 300
+G+IP + N LEG IP ++ + L L L N L+G IP+ N
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 301 ALRILSLGSNELT-SIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNF 359
L +SL +N LT IP L+++ L +S+N F+G +P E+G+ + LI +D + N F
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 360 SGVIPTEI 367
+G IP +
Sbjct: 548 NGTIPAAM 555
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 144/339 (42%), Gaps = 38/339 (11%)
Query: 18 GEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVXX 77
G IP G+L+ L + LW N L GEIP E+ ++ LE L L N L G +P+ + N
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT- 487
Query: 78 XXXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSF 137
NL +SL N G IP++I L+IL+L NSF
Sbjct: 488 ------------------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 138 SGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKT 197
SG IP G+ R+L L+L N + P F S ++ N + G R
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---------GKIAANFIAGK-RYV 573
Query: 198 SVGNLSHSLEIFLMYN-CNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXX 256
+ N E N G SE+++ L+ N+ G
Sbjct: 574 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 633
Query: 257 XXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS-I 315
N L G IP +I + L+ L LG N +SGSIP G+L L IL L SN+L I
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 316 PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDF 354
P L + ++++S+N +GP+P E+G + F
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKF 731
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 143/344 (41%), Gaps = 38/344 (11%)
Query: 99 RLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQD 158
R NLE L + NNF+ IP F+ + S L L++ GN SG L+ LN+
Sbjct: 195 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISG 218
N P L KSL ++L+ N G + FL C+
Sbjct: 254 NQFVGPIPPLPL-------KSLQYLSLAENKFTGEIPD------------FLSGACDT-- 292
Query: 219 GISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP-DDICRLDE 277
LT ++L GN G++P N G +P D + ++
Sbjct: 293 -----------LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 278 LYELELGGNKLSGSIPACFGNLIA-LRILSLGSNELTS--IPLTFWNLKDILQ-LNISSN 333
L L+L N+ SG +P NL A L L L SN + +P N K+ LQ L + +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 334 YFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGD 393
FTG +P + N L+ + S N SG IP+ +G L L L L N L G IP
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 394 LIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPR 437
+ G IP+ L + L ++LS N+L GEIP+
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 148/342 (43%), Gaps = 42/342 (12%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+ L++ GN +G + + L L++ N+FS IP G+ L+ L++ N L+
Sbjct: 177 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 233
Query: 163 SSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISE 222
F ++S C L L+ +S+N G + + SL+ + +G I +
Sbjct: 234 GD-----FSRAISTCTELKLLNISSNQFVGPIPPLPL----KSLQYLSLAENKFTGEIPD 284
Query: 223 EISNLTN-LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP-DDICRLDELYE 280
+S + LT ++L GN G++P N G +P D + ++ L
Sbjct: 285 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 281 LELGGNKLSGSIPACFGNLIA-LRILSLGSNELTS--IPLTFWNLKDILQ-LNISSNYFT 336
L+L N+ SG +P NL A L L L SN + +P N K+ LQ L + +N FT
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 337 GPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIX 396
G +P + N L+ + S N SG IP+ +G L L L L N L G IP
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE------ 458
Query: 397 XXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPRG 438
L + LE L L FN L GEIP G
Sbjct: 459 ------------------LMYVKTLETLILDFNDLTGEIPSG 482
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDN 159
+P L L+L N+ +G+IP + + L+IL+L N G IP L L ++L +N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 160 YLTSSTPELSFLSSLSNCKSLTLIALSNNPL 190
L+ PE+ + K L L PL
Sbjct: 712 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 145/484 (29%), Positives = 201/484 (41%), Gaps = 58/484 (11%)
Query: 27 LADLEQMSLWENNLRGEIP-LEIGNLQNLEELDLRQNKLVGIVPAAIFNVXXXXXXXXXX 85
L L+ +SL EN GEIP G L LDL N G VP +
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 86 XXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFN-ASKLSILELVGNSFSG-FIPN 143
+++ L+ L L N F+G +P + N ++ L L+L N+FSG +PN
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 144 TFGNLRN-LERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNL 202
N +N L+ L LQ+N T P +LSNC L + LS N L G + +S+G+L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPP-----TLSNCSELVSLHLSFNYLSGTI-PSSLGSL 441
Query: 203 SHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDN 262
S ++ L N + G I +E+ + L T+ L N L G IP +N
Sbjct: 442 SKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 263 KLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELT-SIPLTFWN 321
+L G IP I RL+ L L+L N SG+IPA G+ +L L L +N +IP +
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 322 LKDILQ----------------------------------------------LNISSNYF 335
+ NI+S +
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 336 TGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLI 395
G N ++ +D S N SG IP EIG + L L LG+N + GSIPD GDL
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 396 XXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL 455
G IP ++ L+ L +++LS N L G IP G F F F N L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740
Query: 456 CGSP 459
CG P
Sbjct: 741 CGYP 744
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/373 (29%), Positives = 166/373 (44%), Gaps = 37/373 (9%)
Query: 23 EFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVXXXXXXX 82
+ +LE + + NN IP +G+ L+ LD+ NKL G AI
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI---STCTELK 250
Query: 83 XXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNAS-KLSILELVGNSFSGFI 141
I + L +L+ LSL N F G IP F+ A L+ L+L GN F G +
Sbjct: 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310
Query: 142 PNTFG-------------------------NLRNLERLNLQDNYLTSSTPELSFLSSLSN 176
P FG +R L+ L+L N + PE SL+N
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-----SLTN 365
Query: 177 -CKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINL 235
SL + LS+N G + N ++L+ + N +G I +SN + L +++L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 236 GGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPAC 295
N L+G+IP + N LEG IP ++ + L L L N L+G IP+
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 296 FGNLIALRILSLGSNELT-SIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDF 354
N L +SL +N LT IP L+++ L +S+N F+G +P E+G+ + LI +D
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 355 SMNNFSGVIPTEI 367
+ N F+G IP +
Sbjct: 546 NTNLFNGTIPAAM 558
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/339 (29%), Positives = 144/339 (42%), Gaps = 38/339 (11%)
Query: 18 GEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVXX 77
G IP G+L+ L + LW N L GEIP E+ ++ LE L L N L G +P+ + N
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT- 490
Query: 78 XXXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSF 137
NL +SL N G IP++I L+IL+L NSF
Sbjct: 491 ------------------------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 138 SGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKT 197
SG IP G+ R+L L+L N + P F S ++ N + G R
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS---------GKIAANFIAGK-RYV 576
Query: 198 SVGNLSHSLEIFLMYN-CNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXX 256
+ N E N G SE+++ L+ N+ G
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 257 XXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS-I 315
N L G IP +I + L+ L LG N +SGSIP G+L L IL L SN+L I
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 316 PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDF 354
P L + ++++S+N +GP+P E+G + F
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKF 734
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 143/344 (41%), Gaps = 38/344 (11%)
Query: 99 RLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQD 158
R NLE L + NNF+ IP F+ + S L L++ GN SG L+ LN+
Sbjct: 198 RCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISG 218
N P L KSL ++L+ N G + FL C+
Sbjct: 257 NQFVGPIPPLPL-------KSLQYLSLAENKFTGEIPD------------FLSGACDT-- 295
Query: 219 GISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP-DDICRLDE 277
LT ++L GN G++P N G +P D + ++
Sbjct: 296 -----------LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 278 LYELELGGNKLSGSIPACFGNLIA-LRILSLGSNELTS--IPLTFWNLKDILQ-LNISSN 333
L L+L N+ SG +P NL A L L L SN + +P N K+ LQ L + +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 334 YFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGD 393
FTG +P + N L+ + S N SG IP+ +G L L L L N L G IP
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 394 LIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPR 437
+ G IP+ L + L ++LS N+L GEIP+
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Score = 91.7 bits (226), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 148/342 (43%), Gaps = 42/342 (12%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+ L++ GN +G + + L L++ N+FS IP G+ L+ L++ N L+
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236
Query: 163 SSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISE 222
F ++S C L L+ +S+N G + + SL+ + +G I +
Sbjct: 237 GD-----FSRAISTCTELKLLNISSNQFVGPIPPLPL----KSLQYLSLAENKFTGEIPD 287
Query: 223 EISNLTN-LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP-DDICRLDELYE 280
+S + LT ++L GN G++P N G +P D + ++ L
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 281 LELGGNKLSGSIPACFGNLIA-LRILSLGSNELTS--IPLTFWNLKDILQ-LNISSNYFT 336
L+L N+ SG +P NL A L L L SN + +P N K+ LQ L + +N FT
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 337 GPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIX 396
G +P + N L+ + S N SG IP+ +G L L L L N L G IP
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE------ 461
Query: 397 XXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPRG 438
L + LE L L FN L GEIP G
Sbjct: 462 ------------------LMYVKTLETLILDFNDLTGEIPSG 485
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%)
Query: 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDN 159
+P L L+L N+ +G+IP + + L+IL+L N G IP L L ++L +N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 160 YLTSSTPELSFLSSLSNCKSLTLIALSNNPL 190
L+ PE+ + K L L PL
Sbjct: 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 109/243 (44%), Gaps = 5/243 (2%)
Query: 220 ISEEISNLTNLTTINLGG-NKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDEL 278
I ++NL L + +GG N L G IP A + G+IPD + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 279 YELELGGNKLSGSIPACFGNLIALRILSLGSNELT-SIPLTFWNLKDIL-QLNISSNYFT 336
L+ N LSG++P +L L ++ N ++ +IP ++ + + + IS N T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 337 GPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIX 396
G +P NL L +D S N G G KN + + L N L + G
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 397 XXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC 456
G +P L +L +L LN+SFN L GEIP+GG+ F ++ N+ LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 457 GSP 459
GSP
Sbjct: 306 GSP 308
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 4/186 (2%)
Query: 206 LEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLE 265
L + + N+SG I + +S + L T++ N L+G++P + + N++
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 266 GSIPDDICRLDELY-ELELGGNKLSGSIPACFGNLIALRILSLGSNELT-SIPLTFWNLK 323
G+IPD +L+ + + N+L+G IP F NL L + L N L + F + K
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 324 DILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 383
+ +++++ N L ++G K L G+D N G +P + LK L L + +N L
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 384 RGSIPD 389
G IP
Sbjct: 281 CGEIPQ 286
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 102/266 (38%), Gaps = 56/266 (21%)
Query: 100 LPNLEELSLWG-NNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQD 158
LP L L + G NN G IP I ++L L + + SG IP+ ++ L L+
Sbjct: 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134
Query: 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISG 218
N L+ + P +SSL N +T DGN ISG
Sbjct: 135 NALSGTLPP--SISSLPNLVGIT--------FDGN---------------------RISG 163
Query: 219 GISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDEL 278
I + + + L T S+ I+ N+L G IP L+ L
Sbjct: 164 AIPDSYGSFSKLFT----------SMTISR-------------NRLTGKIPPTFANLN-L 199
Query: 279 YELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGP 338
++L N L G FG+ + + L N L K++ L++ +N G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 339 LPLEIGNLKVLIGIDFSMNNFSGVIP 364
LP + LK L ++ S NN G IP
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 95/246 (38%), Gaps = 48/246 (19%)
Query: 20 IPREFGNLADLEQMSLWE-NNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVXXX 78
IP NL L + + NNL G IP I L L L + + G +P +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL------ 121
Query: 79 XXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFS 138
++ L L N +GT+P I + L + GN S
Sbjct: 122 -------------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 139 GFIPNTFGNLRNL-ERLNLQDNYLTSSTPE------LSFLSSLSNC------------KS 179
G IP+++G+ L + + N LT P L+F+ N K+
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 180 LTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNK 239
I L+ N L +L K VG LS +L + N I G + + ++ L L ++N+ N
Sbjct: 223 TQKIHLAKNSLAFDLGK--VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 240 LNGSIP 245
L G IP
Sbjct: 280 LCGEIP 285
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 268 IPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDIL 326
IP D +LD L NKLS F L LR+L L N+L ++P F LK++
Sbjct: 35 IPADTKKLD------LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 327 QLNISSNYFTGPLPLEIGNLKV-LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRG 385
L ++ N LP+ + + V L + N + P L L YL LGYN L+
Sbjct: 89 TLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ- 146
Query: 386 SIPDSFGDLIXXXXXXXXXXXXXGAIP-ASLEKLSYLEDLNLSFNKLEGEIPRGG 439
S+P D + +P + +KL+ L+ L L N+L+ +P G
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 261 DNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP 316
DNKL+ +L L EL L N+L P F +L L LSLG NEL S+P
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 282 ELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGPLP 340
+L +K+ + + F + L L+L NE+ I FW L +L+LN+S N+
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 341 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGD 393
NL L +D S N+ + GL NL+ L L N+L+ S+PD D
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 10 DNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGN----LQNLEELDLRQNKLV 65
+ FL + G F LA+LE ++L + NL G + GN L +LE L LR N +
Sbjct: 89 NQFLQLETGA----FNGLANLEVLTLTQCNLDGAVL--SGNFFKPLTSLEMLVLRDNNIK 142
Query: 66 GIVPAAIF 73
I PA+ F
Sbjct: 143 KIQPASFF 150
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 262 NKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFW 320
N+++ D+ L ELEL N +S P F NL LR L L SN L IPL F
Sbjct: 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT 101
Query: 321 NLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 378
L ++ +L+IS N L +L L ++ N+ + GL +LE L L
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 120/312 (38%), Gaps = 70/312 (22%)
Query: 23 EFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVXXXXXXX 82
EF + LE++ L EN + P NL NL L LR N+L ++P +F
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVF--------- 100
Query: 83 XXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIP 142
L NL +L + N + + L LE+ N
Sbjct: 101 ---------------TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145
Query: 143 NTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLD----GNLRKTS 198
F L +LE+L L+ LTS E LS L L L L+ N + L +
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEA--LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 199 VGNLSH---------------SLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGS 243
V +SH +L + +CN++ + +L L +NL N
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN----- 258
Query: 244 IPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALR 303
PI+ +EGS+ ++ RL E++L G +L+ P F L LR
Sbjct: 259 -PIST---------------IEGSMLHELLRLQ---EIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 304 ILSLGSNELTSI 315
+L++ N+LT++
Sbjct: 300 VLNVSGNQLTTL 311
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 262 NKLEGSIPDDICRLDELYELELGGNKLSGSIPA-CFGNLIALRILSLGSNELTSIP-LTF 319
KLE + D + L ELY LG N+L G++P F +L L +L LG+N+LT +P F
Sbjct: 53 TKLEPGVFDSLINLKELY---LGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVF 108
Query: 320 WNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 378
L + +L + N T LP I L L + N + L +L + +L
Sbjct: 109 DRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 262 NKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFW 320
+K S+P I ++ L L N+++ P F +LI L+ L LGSN+L ++P+ F
Sbjct: 28 SKRHASVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD 85
Query: 321 NLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 380
+L + L++ +N T LP + + V + F N +P I L +L +L L
Sbjct: 86 SLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ 144
Query: 381 NRLRGSIP 388
N+L+ SIP
Sbjct: 145 NQLK-SIP 151
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 37/187 (19%)
Query: 286 NKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNYFTGPLPLEI- 343
+K S+PA G +IL L N++T + P F +L ++ +L + SN G LP+ +
Sbjct: 28 SKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVF 84
Query: 344 GNLKVLIGIDFSMNNFSGVIPTEI-GGLKNLEYLFLGYNRLRGSIPDSFGDLIXXXXXXX 402
+L L +D N + V+P+ + L +L+ LF+ N+L
Sbjct: 85 DSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT------------------ 125
Query: 403 XXXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFE---GNELLCGSP 459
+P +E+L++L L L N+L+ IP G+F S+ + GN C
Sbjct: 126 -------ELPRGIERLTHLTHLALDQNQLKS-IPH-GAFDRLSSLTHAYLFGNPWDCECR 176
Query: 460 NLQYYIN 466
++ Y N
Sbjct: 177 DIMYLRN 183
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 99 RLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQD 158
RLP+L +L L N G P AS + L+L N F L L+ LNL D
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLR 195
N ++ P S + SLT + L++NP + N
Sbjct: 112 NQISCVMP-----GSFEHLNSLTSLNLASNPFNCNCH 143
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 274 RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP-LTFWNLKDILQLNISS 332
RL L +LEL N+L+G P F ++ L LG N++ I F L + LN+
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 333 NYFTGPLPLEIGNLKVLIGIDFSMNNF 359
N + +P +L L ++ + N F
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 44/117 (37%)
Query: 344 GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIXXXXXXXX 403
G L L+ ++ N +G+ P G +++ L LG N+++ F L
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 404 XXXXXGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN 460
+P S E L+ L LNL+ N +S G CG+P+
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 145 FGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSH 204
FG L +L +L L+ N LT P ++ + + L N + K +G H
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEP-----NAFEGASHIQELQLGENKIKEISNKMFLG--LH 102
Query: 205 SLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIA 247
L+ +Y+ IS + +L +LT++NL N N + +A
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 83/219 (37%), Gaps = 26/219 (11%)
Query: 125 SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIA 184
L L LV N S F LR L++L + N+L P L SL +
Sbjct: 78 QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--------SSLVELR 129
Query: 185 LSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLT-------NLTTINLGG 237
+ +N +RK G S + NC GG E S L + +
Sbjct: 130 IHDN----RIRKVPKGVFSGLRNM----NCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 238 NKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFG 297
KL G I + NK++ +D+ R +LY L LG N++
Sbjct: 182 AKLTG---IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238
Query: 298 NLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFT 336
L LR L L +N+L+ +P +LK + + + +N T
Sbjct: 239 FLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT 277
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 270 DDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLN 329
DD L LY L L NK+S F L L+ L + N L IP + +++L
Sbjct: 72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS--SLVELR 129
Query: 330 ISSNYFTGPLPLEIGNLKVLIGIDFSMNNF--SGVIPTEIGGLKNLEYLFLGYNRLRG-- 385
I N L+ + I+ N SG P GLK L YL + +L G
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIP 188
Query: 386 -SIPDSFGDL 394
+P++ +L
Sbjct: 189 KDLPETLNEL 198
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 121/289 (41%), Gaps = 25/289 (8%)
Query: 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDN 159
L NLE L+L GN P + N KL+ L + N + + NL NL L L ++
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNED 120
Query: 160 YLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGG 219
++ +P L++L+ SL L A + NL S + L + +
Sbjct: 121 NISDISP----LANLTKXYSLNLGA------NHNLSDLSPLSNXTGLNYLTVTESKVKD- 169
Query: 220 ISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELY 279
I+NLT+L +++L N++ P+A N++ P + L
Sbjct: 170 -VTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV--NQITDITP--VANXTRLN 224
Query: 280 ELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPL 339
L++G NK++ P NL L L +G+N+++ I +L + LN+ SN +
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKXLNVGSNQISDIS 281
Query: 340 PLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIP 388
L NL L + + N IGGL NL LFL N + P
Sbjct: 282 VL--NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 268 IPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQ 327
I +I + D L L L GN L+ +PA NL LR+L L N LTS+P + +
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 328 LNISSNYFTGPLPLEIGNL 346
N T LP E GNL
Sbjct: 298 FYFFDNMVTT-LPWEFGNL 315
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 43 EIPLEIGNLQNLEELDLRQNKLVGIVPAAI 72
E+P EI NL NL LDL N+L + PA +
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTSL-PAEL 289
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Query: 96 ADVRLPNLEELSLWGNNFN---GTIPRFIFNASKLSILELVGNSFSGFIPNT-FGNLRNL 151
+++L NL L ++N G + +L +L++ P++ F NL L
Sbjct: 367 CNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLL 426
Query: 152 ERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLM 211
LNL L +S L L+ L + + L L N+ DG++ KT++ + SLEI ++
Sbjct: 427 RVLNLSHCLLDTSNQHL--LAGLQDLRHLNLQG--NSFQDGSISKTNLLQMVGSLEILIL 482
Query: 212 YNCNISGGISEEISNLTNLTTINLGGNKLNG 242
+CN+ + L N+ ++L N L G
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTG 513
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%)
Query: 260 EDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTF 319
++NK+ D L L+ L L NK+S P F L+ L L L N+L +P
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 320 WNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNF--SGVIPTEIGGLKNLEYLF 377
K + +L + N T L +I ++ N SG+ G+K L Y+
Sbjct: 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 378 LGYNRLRGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEG 433
+ + +IP + A ASL+ L+ L L LSFN +
Sbjct: 178 IADTNIT-TIPQGLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISA 230
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 7/176 (3%)
Query: 260 EDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTF 319
++NK+ D L L+ L L NK+S P F L+ L L L N+L +P
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Query: 320 WNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNF--SGVIPTEIGGLKNLEYLF 377
K + +L + N T L +I ++ N SG+ G+K L Y+
Sbjct: 120 P--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177
Query: 378 LGYNRLRGSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKLEG 433
+ + +IP + A ASL+ L+ L L LSFN +
Sbjct: 178 IADTNIT-TIPQGLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSISA 230
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 274 RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQ-LNISS 332
+ +L LE N+L G +PA FG+ I L L+L N++T IP F + ++ L+ +
Sbjct: 328 KXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386
Query: 333 NYFTG-PLPLEIGNLKVLIGIDFSMN--------NFSGVIPTEIGGL 370
N P + ++ V IDFS N NF + PT G+
Sbjct: 387 NKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 28/166 (16%)
Query: 16 QLGEIPR-EFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFN 74
QL +P F L +L+++ L EN L+ L NL L+L N+L + P +F+
Sbjct: 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL-PKGVFD 154
Query: 75 VXXXXXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNA-SKLSILELV 133
+L NL EL L N ++P +F+ ++L L L
Sbjct: 155 ------------------------KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLY 189
Query: 134 GNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKS 179
N F L +L+ + L DN + P + +LS N S
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 235
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 160 YLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNC--NIS 217
YL +L +S+L +LT + L+ N L L L++ E+ L+ N ++
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 218 GGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDIC-RLD 276
G+ ++ LTNLT +NL N+L S+P + +L
Sbjct: 126 DGVFDK---LTNLTYLNLAHNQLQ-------------------------SLPKGVFDKLT 157
Query: 277 ELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP 316
L EL+L N+L F L L+ L L N+L S+P
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 93/226 (41%), Gaps = 60/226 (26%)
Query: 95 IADVRLPNLE--ELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIP--NTFGNLRN 150
++V LP+LE +LS G +F G + F + L L+L SF+G I + F L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL---SFNGVITMSSNFLGLEQ 397
Query: 151 LERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFL 210
LE L+ Q + L + E S SL N LI L ++SH+ +
Sbjct: 398 LEHLDFQHSNLKQMS-EFSVFLSLRN-----LIYL---------------DISHT-HTRV 435
Query: 211 MYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPD 270
+N +G L++L + + GN E +PD
Sbjct: 436 AFNGIFNG--------LSSLEVLKMAGNSFQ-----------------------ENFLPD 464
Query: 271 DICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP 316
L L L+L +L P F +L +L++L++ SN+L S+P
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 25 GNLADLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGI 67
G+L L+++++ N ++ ++P NL NLE LDL NK+ I
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 86/221 (38%), Gaps = 57/221 (25%)
Query: 126 KLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS-STPELSFLSSLSNCKSLTLIA 184
L IL+L N F L +L L L DN LT+ T +LS L +
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRE------LW 113
Query: 185 LSNNPLDG----------NLRKTSVGNLSHSLEIFLMYNCNISGGISEE-ISNLTNLTTI 233
L NNP++ +LR+ +G L L Y ISE L NL +
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKR-----LEY-------ISEAAFEGLVNLRYL 161
Query: 234 NLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIP 293
NLG L IP+ + L L ELEL GN+L P
Sbjct: 162 NLGMCNLK-------------------------DIPN-LTALVRLEELELSGNRLDLIRP 195
Query: 294 ACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSN 333
F L +LR L L ++ +I F +LK + +LN+S N
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDN 159
L LEEL L GN + P + L L L+ + N F +L++LE LNL N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 160 YLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGN 193
L S +L + L + L++NP N
Sbjct: 237 NLMSLPHDL-----FTPLHRLERVHLNHNPWHCN 265
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 275 LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP---------LTFWNLKDI 325
L L LEL N+L+ F L LR L L +N + SIP L +L ++
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 326 LQLN-ISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR 384
+L IS F G + NL+ L + M N + + L LE L L NRL
Sbjct: 142 KRLEYISEAAFEG-----LVNLRYL---NLGMCNLKDI--PNLTALVRLEELELSGNRLD 191
Query: 385 GSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKL 431
P SF L + + L LE+LNLS N L
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 27/166 (16%)
Query: 151 LERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFL 210
++R+ ++ L TP S L L TLI S+N L N+ + + L H L+ F
Sbjct: 72 VDRVQMRRCMLPGHTPIASILDYLGIVSPTTLIFESDN-LGMNITRQHLDRL-HGLKRFR 129
Query: 211 MYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPD 270
++ + ++++ NL+ + L N ++ + D
Sbjct: 130 FTTRRLTHIPANLLTDMRNLSHLELRANI----------------------EEMPSHLFD 167
Query: 271 DICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP 316
D L+ L +E G NKL FG + L+ L+L SN+L S+P
Sbjct: 168 D---LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVP 210
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 130/334 (38%), Gaps = 40/334 (11%)
Query: 125 SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIA 184
+ +++L L N F L L++ N ++ PEL C+ L ++
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--------CQKLPMLK 81
Query: 185 ---LSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLN 241
L +N L L + ++ E+ LM N +I + NL T++L N L+
Sbjct: 82 VLNLQHNEL-SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS 139
Query: 242 GSIPIAXXXXXXXXXXXXEDNKLEGSIPD--DICRLDELYELELGGNKLSGSIPACF--- 296
+ +NK++ + DI L +LEL N++ P CF
Sbjct: 140 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 199
Query: 297 GNLIALRI--LSLGSNELTSIPLTFWN--LKDIL----QLNISSNYFTGPLPLEIGNLKV 348
G L L + + LG + + L N ++++ QL+ +SN T L L+ NL +
Sbjct: 200 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN--TTFLGLKWTNLTM 257
Query: 349 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIXXXXXXXXXXXXX 408
L D S NN + V L LEY FL YN ++ S L
Sbjct: 258 L---DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 314
Query: 409 GAIP-ASLEK--------LSYLEDLNLSFNKLEG 433
+I ASL K L LE LN+ N + G
Sbjct: 315 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 119/319 (37%), Gaps = 81/319 (25%)
Query: 121 IFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPEL------------ 168
IF S L LEL N F P F + L L L + L S E
Sbjct: 172 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 231
Query: 169 -----SFLSSLSNC-------KSLTLIALSNNPLDGNLRKTSVGNLSHS----LEIFLMY 212
S LS+ SN +LT++ LS N L+ VGN S + LE F +
Sbjct: 232 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN------VVGNDSFAWLPQLEYFFLE 285
Query: 213 NCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP--D 270
NI S + L N+ +NL + SI +A S+P D
Sbjct: 286 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-------------------SLPKID 326
Query: 271 DIC--RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI------------- 315
D L L L + N + G F LI L+ LSL SN TS+
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAH 385
Query: 316 -PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIP-TEIGGLKNL 373
PL NL I S+ F+ +G+L+VL D +N + E GL+N+
Sbjct: 386 SPLHILNLTKNKISKIESDAFSW-----LGHLEVL---DLGLNEIGQELTGQEWRGLENI 437
Query: 374 EYLFLGYNRLRGSIPDSFG 392
++L YN+ +SF
Sbjct: 438 FEIYLSYNKYLQLTRNSFA 456
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 130/334 (38%), Gaps = 40/334 (11%)
Query: 125 SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIA 184
+ +++L L N F L L++ N ++ PEL C+ L ++
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--------CQKLPMLK 76
Query: 185 ---LSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLN 241
L +N L L + ++ E+ LM N +I + NL T++L N L+
Sbjct: 77 VLNLQHNEL-SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS 134
Query: 242 GSIPIAXXXXXXXXXXXXEDNKLEGSIPD--DICRLDELYELELGGNKLSGSIPACF--- 296
+ +NK++ + DI L +LEL N++ P CF
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194
Query: 297 GNLIALRI--LSLGSNELTSIPLTFWN--LKDIL----QLNISSNYFTGPLPLEIGNLKV 348
G L L + + LG + + L N ++++ QL+ +SN T L L+ NL +
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN--TTFLGLKWTNLTM 252
Query: 349 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIXXXXXXXXXXXXX 408
L D S NN + V L LEY FL YN ++ S L
Sbjct: 253 L---DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309
Query: 409 GAIP-ASLEK--------LSYLEDLNLSFNKLEG 433
+I ASL K L LE LN+ N + G
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 119/319 (37%), Gaps = 81/319 (25%)
Query: 121 IFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPEL------------ 168
IF S L LEL N F P F + L L L + L S E
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226
Query: 169 -----SFLSSLSNC-------KSLTLIALSNNPLDGNLRKTSVGNLSHS----LEIFLMY 212
S LS+ SN +LT++ LS N L+ VGN S + LE F +
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN------VVGNDSFAWLPQLEYFFLE 280
Query: 213 NCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP--D 270
NI S + L N+ +NL + SI +A S+P D
Sbjct: 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-------------------SLPKID 321
Query: 271 DIC--RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI------------- 315
D L L L + N + G F LI L+ LSL SN TS+
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAH 380
Query: 316 -PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIP-TEIGGLKNL 373
PL NL I S+ F+ +G+L+VL D +N + E GL+N+
Sbjct: 381 SPLHILNLTKNKISKIESDAFSW-----LGHLEVL---DLGLNEIGQELTGQEWRGLENI 432
Query: 374 EYLFLGYNRLRGSIPDSFG 392
++L YN+ +SF
Sbjct: 433 FEIYLSYNKYLQLTRNSFA 451
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 130/334 (38%), Gaps = 40/334 (11%)
Query: 125 SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIA 184
+ +++L L N F L L++ N ++ PEL C+ L ++
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL--------CQKLPMLK 86
Query: 185 ---LSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLN 241
L +N L L + ++ E+ LM N +I + NL T++L N L+
Sbjct: 87 VLNLQHNEL-SQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLS 144
Query: 242 GSIPIAXXXXXXXXXXXXEDNKLEGSIPD--DICRLDELYELELGGNKLSGSIPACF--- 296
+ +NK++ + DI L +LEL N++ P CF
Sbjct: 145 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 204
Query: 297 GNLIALRI--LSLGSNELTSIPLTFWN--LKDIL----QLNISSNYFTGPLPLEIGNLKV 348
G L L + + LG + + L N ++++ QL+ +SN T L L+ NL +
Sbjct: 205 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN--TTFLGLKWTNLTM 262
Query: 349 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIXXXXXXXXXXXXX 408
L D S NN + V L LEY FL YN ++ S L
Sbjct: 263 L---DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 319
Query: 409 GAIP-ASLEK--------LSYLEDLNLSFNKLEG 433
+I ASL K L LE LN+ N + G
Sbjct: 320 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 353
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 119/319 (37%), Gaps = 81/319 (25%)
Query: 121 IFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPEL------------ 168
IF S L LEL N F P F + L L L + L S E
Sbjct: 177 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 236
Query: 169 -----SFLSSLSNC-------KSLTLIALSNNPLDGNLRKTSVGNLSHS----LEIFLMY 212
S LS+ SN +LT++ LS N L+ VGN S + LE F +
Sbjct: 237 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN------VVGNDSFAWLPQLEYFFLE 290
Query: 213 NCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP--D 270
NI S + L N+ +NL + SI +A S+P D
Sbjct: 291 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA-------------------SLPKID 331
Query: 271 DIC--RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI------------- 315
D L L L + N + G F LI L+ LSL SN TS+
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL-SNSFTSLRTLTNETFVSLAH 390
Query: 316 -PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIP-TEIGGLKNL 373
PL NL I S+ F+ +G+L+VL D +N + E GL+N+
Sbjct: 391 SPLHILNLTKNKISKIESDAFSW-----LGHLEVL---DLGLNEIGQELTGQEWRGLENI 442
Query: 374 EYLFLGYNRLRGSIPDSFG 392
++L YN+ +SF
Sbjct: 443 FEIYLSYNKYLQLTRNSFA 461
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 216 ISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDIC-R 274
+S G+ +LT L T+ L N+L S+P+ S+P + R
Sbjct: 74 LSAGV---FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 275 LDELYELELGGNKLSGSIPA-CFGNLIALRILSLGSNELTSIP 316
L +L EL L N+L SIPA F L L+ LSL +N+L S+P
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 77/204 (37%), Gaps = 55/204 (26%)
Query: 275 LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNY 334
L +L L L N+L F +L L L L +N+L S+PL ++
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD------------- 104
Query: 335 FTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394
L L+ L+LG N+L+ S+P D
Sbjct: 105 ----------------------------------HLTQLDKLYLGGNQLK-SLPSGVFDR 129
Query: 395 IXXXXXXXXXXXXXGAIPA-SLEKLSYLEDLNLSFNKLEGEIPRGG--SFGNFSAESFEG 451
+ +IPA + +KL+ L+ L+LS N+L+ +P G G + G
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 452 NELLCGSPNLQY---YINDSSHFV 472
N+ C + Y +I ++S+ V
Sbjct: 189 NQFDCSRCEILYLSQWIRENSNKV 212
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 16 QLGEIP-REFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFN 74
QL +P F +L L+++ L N L+ L L+EL L N+L I PA F+
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFD 152
Query: 75 VXXXXXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNA-SKLSILELV 133
+L NL+ LSL N ++P F+ KL + L
Sbjct: 153 ------------------------KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 134 GNSF 137
GN F
Sbjct: 188 GNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 216 ISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDIC-R 274
+S G+ +LT L T+ L N+L S+P+ S+P + R
Sbjct: 74 LSAGV---FDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129
Query: 275 LDELYELELGGNKLSGSIPA-CFGNLIALRILSLGSNELTSIP 316
L +L EL L N+L SIPA F L L+ LSL +N+L S+P
Sbjct: 130 LTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 76/204 (37%), Gaps = 55/204 (26%)
Query: 275 LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNY 334
L +L L L N+L F +L L L L +N+L S+PL ++
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD------------- 104
Query: 335 FTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394
L L+ L+LG N+L+ S+P D
Sbjct: 105 ----------------------------------HLTQLDKLYLGGNQLK-SLPSGVFDR 129
Query: 395 IXXXXXXXXXXXXXGAIPA-SLEKLSYLEDLNLSFNKLEGEIPRGG--SFGNFSAESFEG 451
+ +IPA + +KL+ L+ L+LS N+L+ +P G G + G
Sbjct: 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFG 188
Query: 452 NELLCGSPNLQY---YINDSSHFV 472
N+ C Y +I ++S+ V
Sbjct: 189 NQFDCSRCETLYLSQWIRENSNKV 212
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 16 QLGEIP-REFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFN 74
QL +P F +L L+++ L N L+ L L+EL L N+L I PA F+
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFD 152
Query: 75 VXXXXXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNA-SKLSILELV 133
+L NL+ LSL N ++P F+ KL + L
Sbjct: 153 ------------------------KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLF 187
Query: 134 GNSF 137
GN F
Sbjct: 188 GNQF 191
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 113 FNGTIPRFIFNA-SKLSILELVGNSFS-GFIPNTFGNLRNLERLNLQDNYLTSSTPELSF 170
FNG IFN S L +L++ GNSF F+P+ F LRNL L+L L +P
Sbjct: 461 FNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---- 511
Query: 171 LSSLSNCKSLTLIALSNN 188
++ ++ SL ++ +S+N
Sbjct: 512 -TAFNSLSSLQVLNMSHN 528
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 25 GNLADLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGI 67
G+L L+++++ N ++ ++P NL NLE LDL NK+ I
Sbjct: 145 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 86/221 (38%), Gaps = 57/221 (25%)
Query: 126 KLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS-STPELSFLSSLSNCKSLTLIA 184
L IL+L N F L +L L L DN LT+ T +LS L +
Sbjct: 60 HLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRE------LW 113
Query: 185 LSNNPLDG----------NLRKTSVGNLSHSLEIFLMYNCNISGGISEE-ISNLTNLTTI 233
L NNP++ +LR+ +G L L Y ISE L NL +
Sbjct: 114 LRNNPIESIPSYAFNRVPSLRRLDLGELKR-----LEY-------ISEAAFEGLVNLRYL 161
Query: 234 NLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIP 293
NLG L IP+ + L L ELEL GN+L P
Sbjct: 162 NLGMCNLK-------------------------DIPN-LTALVRLEELELSGNRLDLIRP 195
Query: 294 ACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSN 333
F L +LR L L ++ +I F +LK + +LN+S N
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDN 159
L LEEL L GN + P + L L L+ + N F +L++LE LNL N
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHN 236
Query: 160 YLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGN 193
L S +L + L + L++NP N
Sbjct: 237 NLMSLPHDL-----FTPLHRLERVHLNHNPWHCN 265
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 275 LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP---------LTFWNLKDI 325
L L LEL N+L+ F L LR L L +N + SIP L +L ++
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 326 LQLN-ISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR 384
+L IS F G + NL+ L + M N + + L LE L L NRL
Sbjct: 142 KRLEYISEAAFEG-----LVNLRYL---NLGMCNLKDI--PNLTALVRLEELELSGNRLD 191
Query: 385 GSIPDSFGDLIXXXXXXXXXXXXXGAIPASLEKLSYLEDLNLSFNKL 431
P SF L + + L LE+LNLS N L
Sbjct: 192 LIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 113 FNGTIPRFIFNA-SKLSILELVGNSFS-GFIPNTFGNLRNLERLNLQDNYLTSSTPELSF 170
FNG IFN S L +L++ GNSF F+P+ F LRNL L+L L +P
Sbjct: 437 FNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---- 487
Query: 171 LSSLSNCKSLTLIALSNN 188
++ ++ SL ++ +S+N
Sbjct: 488 -TAFNSLSSLQVLNMSHN 504
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 25 GNLADLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGI 67
G+L L+++++ N ++ ++P NL NLE LDL NK+ I
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 92/224 (41%), Gaps = 57/224 (25%)
Query: 126 KLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIAL 185
L IL+L N F L NL L L DN LT+ P +F+ LS K L L
Sbjct: 89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVY-LSKLKEL---WL 143
Query: 186 SNNPLDG----------NLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLT--NLTTI 233
NNP++ +LR+ +G L L Y IS G E +SNL NL
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKR-----LSY---ISEGAFEGLSNLRYLNLAMC 195
Query: 234 NLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIP 293
NL IP+ + L +L EL+L GN LS P
Sbjct: 196 NLR------------------------------EIPN-LTPLIKLDELDLSGNHLSAIRP 224
Query: 294 ACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFT 336
F L+ L+ L + +++ I F NL+ ++++N++ N T
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 209 FLMYNCNI-SGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXED--NKLE 265
FL + N+ + + + S L L T+ L N L +A + N L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 266 GSIPDDICRLDE-LYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKD 324
D C E + L L N L+GS+ C +++L L +N + SIP +L+
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIMSIPKDVTHLQA 474
Query: 325 ILQLNISSN 333
+ +LN++SN
Sbjct: 475 LQELNVASN 483
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 232 TINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGS 291
+NL N L GS+ +N++ SIP D+ L L EL + N+L
Sbjct: 432 VLNLSSNMLTGSV--FRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSV 488
Query: 292 IPACFGNLIALRILSLGSN 310
F L +L+ + L N
Sbjct: 489 PDGVFDRLTSLQYIWLHDN 507
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 323 KDILQLNISSNYFTGP----LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 378
+ IL LN+SSN TG LP ++ L + NN IP ++ L+ L+ L +
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDL-------HNNRIMSIPKDVTHLQALQELNV 480
Query: 379 GYNRLRGSIPDSFGD 393
N+L+ S+PD D
Sbjct: 481 ASNQLK-SVPDGVFD 494
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 113 FNGTIPRFIFNA-SKLSILELVGNSFS-GFIPNTFGNLRNLERLNLQDNYLTSSTPELSF 170
FNG IFN S L +L++ GNSF F+P+ F LRNL L+L L +P
Sbjct: 142 FNG-----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---- 192
Query: 171 LSSLSNCKSLTLIALSNN 188
++ ++ SL ++ +S+N
Sbjct: 193 -TAFNSLSSLQVLNMSHN 209
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 260 EDNKLEGSIPDDIC-RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP-L 317
E N L+ S+P+ + L L +L LGGNKL F L +L L+L +N+L S+P
Sbjct: 36 ETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94
Query: 318 TFWNLKDILQLNISSNYFTGPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL 376
F L + +L +++N LP + L L + N V L +L+Y+
Sbjct: 95 VFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
Query: 377 FLGYNRLRGSIP 388
+L N + P
Sbjct: 154 WLHDNPWDCTCP 165
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 227 LTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDIC-RLDELYELELGG 285
LT+LT + LGGNKL N+L+ S+P+ + +L +L EL L
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNT 109
Query: 286 NKLSGSIPACFGNLIALRILSLGSNELTSIP 316
N+L F L L+ L L N+L S+P
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 99 RLPNLEELSLWGNNFNGTIPRFIFNA-SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQ 157
+L L+EL+L N ++P +F+ ++L L L N F L +L+ + L
Sbjct: 98 KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 156
Query: 158 DNYLTSSTPELSFLSSLSN 176
DN + P + +LS N
Sbjct: 157 DNPWDCTCPGIRYLSEWIN 175
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 104 EELSLWGNNFNGTI--PRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYL 161
++ LW NN T P + L L N + F L L +L+L DN+L
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93
Query: 162 TSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLR 195
S P +F N KSLT I L NNP D R
Sbjct: 94 -KSIPRGAF----DNLKSLTHIYLYNNPWDCECR 122
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 280 ELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGP 338
L L N+++ P F +L+ L+ L SN+LT+IP F L + QL+++ N+
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 339 LPLEIGNLKVLIGI 352
NLK L I
Sbjct: 97 PRGAFDNLKSLTHI 110
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 263 KLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWN 321
KLE + D + L +LY NKL+ F L L L L N L SIP F N
Sbjct: 47 KLEPGVFDHLVNLQQLY---FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103
Query: 322 LKDILQLNISSNYF 335
LK + + + +N +
Sbjct: 104 LKSLTHIYLYNNPW 117
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 283 LGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNYFTGPL-P 340
L GN++S A F L IL L SN L I F L + QL++S N + P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 341 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394
L L + + P GL L+YL+L N L+ D+F DL
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 151
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 152 ERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLM 211
+R+ L N + S P SF + C++LT++ L +N L + + L+ ++ L
Sbjct: 34 QRIFLHGNRI-SHVPAASFRA----CRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLS 87
Query: 212 YNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDD 271
N + L L T++L L P +DN L+ ++PDD
Sbjct: 88 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDD 146
Query: 272 ICR-LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLN 329
R L L L L GN++S F L +L L L N + + P F +L ++ L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 330 ISSNYFTGPLPLE 342
+ +N + LP E
Sbjct: 207 LFANNLSA-LPTE 218
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Query: 283 LGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNYFTGPL-P 340
L GN++S A F L IL L SN L I F L + QL++S N + P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 341 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394
L L + + P GL L+YL+L N L+ D+F DL
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 152 ERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLM 211
+R+ L N + S P SF + C++LT++ L +N L + + L+ ++ L
Sbjct: 35 QRIFLHGNRI-SHVPAASFRA----CRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLS 88
Query: 212 YNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDD 271
N + L L T++L L P +DN L+ ++PDD
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDD 147
Query: 272 ICR-LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLN 329
R L L L L GN++S F L +L L L N + + P F +L ++ L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 330 ISSNYFTGPLPLE 342
+ +N + LP E
Sbjct: 208 LFANNLSA-LPTE 219
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 104 EELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS 163
+ L L+ N P ++L+ L+L N + F L L +L+L DN L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 99
Query: 164 STPELSFLSSLSNCKSLTLIALSNNPLD 191
S P +F N KSLT I L NNP D
Sbjct: 100 SIPRGAF----DNLKSLTHIWLLNNPWD 123
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 231 TTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSG 290
TT++ G L S+P DN++ P RL +L L+L N+L+
Sbjct: 20 TTVDCSGKSL-ASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTV 76
Query: 291 SIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQL 328
F L L LSL N+L SIP F NLK + +
Sbjct: 77 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 115
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 104 EELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS 163
+ L L+ N P ++L+ L+L N + F L L +L+L DN L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 91
Query: 164 STPELSFLSSLSNCKSLTLIALSNNPLD 191
S P +F N KSLT I L NNP D
Sbjct: 92 SIPRGAF----DNLKSLTHIWLLNNPWD 115
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 231 TTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSG 290
TT++ G L S+P DN++ P RL +L L+L N+L+
Sbjct: 12 TTVDCSGKSL-ASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 291 SIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQL 328
F L L LSL N+L SIP F NLK + +
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 109/278 (39%), Gaps = 21/278 (7%)
Query: 125 SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIA 184
S +++L L N P F L L+ N ++ PEL + L L ++
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL-----LKVLN 79
Query: 185 LSNNPLDGNLRKTSV--GNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNG 242
L +N L +T V NL+ E+ LM N +I S N NL ++L N L+
Sbjct: 80 LQHNELSQISDQTFVFCTNLT---ELDLMSN-SIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Query: 243 SIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRL--DELYELELGGNKLSGSIPACF---G 297
+ NK+ +++ L L +L+L N L P CF G
Sbjct: 136 TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIG 195
Query: 298 NLIALRILSLGSNELTSIPLTFWNLKD--ILQLNISSNYFTGPLPLEIGNLKV--LIGID 353
L AL + + N + L W L + I L++++N LK L +D
Sbjct: 196 KLFALLLNNAQLNPHLTEKLC-WELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLD 254
Query: 354 FSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSF 391
S NN V L +L YL L YN ++ P SF
Sbjct: 255 LSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 128/321 (39%), Gaps = 72/321 (22%)
Query: 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDN 159
LP L+ L+L N + + + L+ L+L+ NS N F N +NL +L+L N
Sbjct: 72 LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 160 YLTSS-------------------------TPELSFLSSLSNCKSLTLIALSNNPLDGNL 194
L+S+ + EL FL + SL + LS+NP L
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN----SSLRKLDLSSNP----L 183
Query: 195 RKTSVGNLSHSLEIF--LMYNCNISGGISE----EISNLTNLTTINLGGNKLNGSIPIAX 248
++ S G ++F L+ N ++ ++E E+SN T++ ++L N+L +
Sbjct: 184 KEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLAT----- 237
Query: 249 XXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLG 308
++ G + L +L+L N L F L +LR LSL
Sbjct: 238 -----------SESTFSG------LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLE 280
Query: 309 SNELTSI-PLTFWNLKDILQLNISSNYFTGPLPL---------EIGNLKVLIGIDFSMNN 358
N + + P +F+ L ++ L++ + + L LK L ++ NN
Sbjct: 281 YNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN 340
Query: 359 FSGVIPTEIGGLKNLEYLFLG 379
GL +L+YL L
Sbjct: 341 IPSTKSNTFTGLVSLKYLSLS 361
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Query: 148 LRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDG-------------NL 194
L NL L L+DN +T TP L N +T + LS NPL +L
Sbjct: 68 LNNLIGLELKDNQITDLTP-------LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDL 120
Query: 195 RKTSVGNLS-----HSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXX 249
T + +++ +L++ L + N IS ++ LTNL +++G N++N P+A
Sbjct: 121 TSTQITDVTPLAGLSNLQV-LYLDLNQITNISP-LAGLTNLQYLSIGNNQVNDLTPLA-- 176
Query: 250 XXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307
+DNK+ P + L L E+ L N++S P NL L I++L
Sbjct: 177 NLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNLFIVTL 230
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 305 LSLGSNELTSI-PLTFWNLKDILQLNISSNYFTGPLPLE----IGNLKVLIGIDFSMNNF 359
L L N++T + PL NL I +L +S N PL+ I L+ + +D +
Sbjct: 74 LELKDNQITDLTPL--KNLTKITELELSGN------PLKNVSAIAGLQSIKTLDLTSTQI 125
Query: 360 SGVIPTEIGGLKNLEYLFLGYNRLRGSIP 388
+ V P + GL NL+ L+L N++ P
Sbjct: 126 TDVTP--LAGLSNLQVLYLDLNQITNISP 152
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 104 EELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS 163
+ L L+ N P ++L+ L+L N + F L L +L+L DN L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-K 91
Query: 164 STPELSFLSSLSNCKSLTLIALSNNPLD 191
S P +F N +SLT I L NNP D
Sbjct: 92 SIPRGAF----DNLRSLTHIWLLNNPWD 115
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 231 TTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSG 290
TT++ G L S+P DN++ P RL +L L+L N+L+
Sbjct: 12 TTVDCSGKSL-ASVPTGIPTTTQVLYLY--DNRITKLEPGVFDRLTQLTRLDLDNNQLTV 68
Query: 291 SIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQL 328
F L L LSL N+L SIP F NL+ + +
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHI 107
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 261 DNKLEGSIPDDICR-----LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI 315
+N L+ + ++C L L L L N L+ P F +L ALR LSL SN LT
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV- 518
Query: 316 PLTFWNLKDILQ-LNISSNYFTGPLPLEIGNLKVLIGIDFSMNNF 359
L+ +L L+ L+IS N P P +L VL D + N F
Sbjct: 519 -LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVL---DITHNKF 559
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 113/270 (41%), Gaps = 62/270 (22%)
Query: 134 GNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNN----- 188
GN + P NL LERL++ N ++ ++S L+ L+N +SL IA +N
Sbjct: 163 GNQVTDLKP--LANLTTLERLDISSNKVS----DISVLAKLTNLESL--IATNNQISDIT 214
Query: 189 -----------PLDGNLRKTSVGNLSH--SLEIFLMYNCNISGGISEEISNLTNLTTINL 235
L+GN K +G L+ +L + N IS +S LT LT + L
Sbjct: 215 PLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKL 271
Query: 236 GGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP-----------------DDICRLDEL 278
G N+++ P+A +N+LE P DI + L
Sbjct: 272 GANQISNISPLA--GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 329
Query: 279 YELE---LGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNY 334
+L+ NK+S + NL + LS G N+++ + PL NL I QL ++
Sbjct: 330 TKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQA 385
Query: 335 FT-GPLPLEIGNLKVLIGIDFSMNNFSGVI 363
+T P+ N K + I ++ N +G +
Sbjct: 386 WTNAPV-----NYKANVSIPNTVKNVTGAL 410
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 216 ISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPD---DI 272
++ + E +LT L T+ L N+L IA + ++ S + D
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395
Query: 273 CRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISS 332
L L + N L+ +I C I ++L L SN++ SIP L+ + +LN++S
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCLPPRI--KVLDLHSNKIKSIPKQVVKLEALQELNVAS 453
Query: 333 N 333
N
Sbjct: 454 N 454
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 113/270 (41%), Gaps = 62/270 (22%)
Query: 134 GNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNN----- 188
GN + P NL LERL++ N ++ ++S L+ L+N +SL IA +N
Sbjct: 159 GNQVTDLKP--LANLTTLERLDISSNKVS----DISVLAKLTNLESL--IATNNQISDIT 210
Query: 189 -----------PLDGNLRKTSVGNLSH--SLEIFLMYNCNISGGISEEISNLTNLTTINL 235
L+GN K +G L+ +L + N IS +S LT LT + L
Sbjct: 211 PLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKL 267
Query: 236 GGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIP-----------------DDICRLDEL 278
G N+++ P+A +N+LE P DI + L
Sbjct: 268 GANQISNISPLA--GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL 325
Query: 279 YELE---LGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNY 334
+L+ NK+S + NL + LS G N+++ + PL NL I QL ++
Sbjct: 326 TKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQA 381
Query: 335 FT-GPLPLEIGNLKVLIGIDFSMNNFSGVI 363
+T P+ N K + I ++ N +G +
Sbjct: 382 WTNAPV-----NYKANVSIPNTVKNVTGAL 406
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 147/372 (39%), Gaps = 84/372 (22%)
Query: 16 QLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNV 75
Q+ +I NL +L ++L+ N + PL+ NL NL L+L N + I +
Sbjct: 96 QIADI-TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALS---- 148
Query: 76 XXXXXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGN 135
L +L++LS N P + N + L L++ N
Sbjct: 149 -----------------------GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 136 SFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLR 195
S + L NLE L +N ++ TP L L+N L+L +GN
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSL--------NGNQL 229
Query: 196 KTSVGNLSH--SLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXX 253
K +G L+ +L + N IS +S LT LT + LG N+++ P+A
Sbjct: 230 K-DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLA--GLTA 284
Query: 254 XXXXXXEDNKLEGSIP-----------------DDICRLDELYELE---LGGNKLSGSIP 293
+N+LE P DI + L +L+ NK+S
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV-- 342
Query: 294 ACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNYFT-GPLPLEIGNLKVLIG 351
+ NL + LS G N+++ + PL NL I QL ++ +T P+ N K +
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPV-----NYKANVS 395
Query: 352 IDFSMNNFSGVI 363
I ++ N +G +
Sbjct: 396 IPNTVKNVTGAL 407
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 28/159 (17%)
Query: 281 LELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLP 340
L LGGNKL + L L L L N+L S+P ++
Sbjct: 68 LALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFD------------------- 106
Query: 341 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIXXXXX 400
++ NLK L+ ++ + + + L NL YL+L +N+L+ S+P D +
Sbjct: 107 -KLTNLKELVLVENQLQSLPDGV---FDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTR 161
Query: 401 XXXXXXXXGAIPASL-EKLSYLEDLNLSFNKLEGEIPRG 438
++P + +KL+ L+ L+L+ N+L+ +P G
Sbjct: 162 LDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPDG 199
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 274 RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP 316
+L L L+L N+L F L L+ LSL N+L S+P
Sbjct: 155 KLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 10/194 (5%)
Query: 152 ERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLM 211
+R+ L N + S P SF S C++LT++ L +N L G + + L+ ++ L
Sbjct: 34 QRIFLHGNRI-SYVPAASFQS----CRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLS 87
Query: 212 YNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDD 271
N + L +L T++L L P +DN L+ ++PD+
Sbjct: 88 DNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDN 146
Query: 272 ICR-LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLN 329
R L L L L GN++ F L +L L L N + + P F +L ++ L
Sbjct: 147 TFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLY 206
Query: 330 ISSNYFTGPLPLEI 343
+ +N + LP E+
Sbjct: 207 LFANNLSM-LPAEV 219
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 283 LGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNYFTGPL-P 340
L GN++S A F + L IL L SN L I F L + QL++S N + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 341 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394
L L + + P GL L+YL+L N L+ ++F DL
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDL 151
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 111/270 (41%), Gaps = 62/270 (22%)
Query: 134 GNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNN----- 188
GN + P NL LERL++ N ++ ++S L+ L+N +SL IA +N
Sbjct: 164 GNQVTDLKP--LANLTTLERLDISSNKVS----DISVLAKLTNLESL--IATNNQISDIT 215
Query: 189 -----------PLDGNLRKTSVGNLSH--SLEIFLMYNCNISGGISEEISNLTNLTTINL 235
L+GN K +G L+ +L + N IS +S LT LT + L
Sbjct: 216 PLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKL 272
Query: 236 GGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIP-- 293
G N+++ P+A +N+LE P I L L L L N +S P
Sbjct: 273 GANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 328
Query: 294 ------------------ACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNY 334
+ NL + LS G N+++ + PL NL I QL ++
Sbjct: 329 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQA 386
Query: 335 FT-GPLPLEIGNLKVLIGIDFSMNNFSGVI 363
+T P+ N K + I ++ N +G +
Sbjct: 387 WTNAPV-----NYKANVSIPNTVKNVTGAL 411
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNT-FGNLRNLERLNLQD 158
L +L+ L+L N G + +L +L+L P + F NL L+ LNL
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISG 218
+L +S L L+ L + L L N+ DG + KT++ SLE+ ++ +C +
Sbjct: 432 CFLDTSNQHL--LAGLPVLRHLNLKG--NHFQDGTITKTNLLQTVGSLEVLILSSCGLLS 487
Query: 219 GISEEISNLTNLTTINLGGNKL 240
+ +L ++ ++L N L
Sbjct: 488 IDQQAFHSLGKMSHVDLSHNSL 509
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 111/270 (41%), Gaps = 62/270 (22%)
Query: 134 GNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNN----- 188
GN + P NL LERL++ N ++ ++S L+ L+N +SL IA +N
Sbjct: 159 GNQVTDLKP--LANLTTLERLDISSNKVS----DISVLAKLTNLESL--IATNNQISDIT 210
Query: 189 -----------PLDGNLRKTSVGNLSH--SLEIFLMYNCNISGGISEEISNLTNLTTINL 235
L+GN K +G L+ +L + N IS +S LT LT + L
Sbjct: 211 PLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKL 267
Query: 236 GGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIP-- 293
G N+++ P+A +N+LE P I L L L L N +S P
Sbjct: 268 GANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 323
Query: 294 ------------------ACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNY 334
+ NL + LS G N+++ + PL NL I QL ++
Sbjct: 324 SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQA 381
Query: 335 FT-GPLPLEIGNLKVLIGIDFSMNNFSGVI 363
+T P+ N K + I ++ N +G +
Sbjct: 382 WTNAPV-----NYKANVSIPNTVKNVTGAL 406
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 145/372 (38%), Gaps = 84/372 (22%)
Query: 16 QLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNV 75
Q+ +I NL +L ++L+ N + PL+ NL NL L+L N + I +
Sbjct: 96 QIADI-TPLANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALS---- 148
Query: 76 XXXXXXXXXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGN 135
L +L++LS N P + N + L L++ N
Sbjct: 149 -----------------------GLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN 183
Query: 136 SFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLR 195
S + L NLE L +N ++ TP L L+N L+L +GN
Sbjct: 184 KVSDI--SVLAKLTNLESLIATNNQISDITP----LGILTNLDELSL--------NGNQL 229
Query: 196 KTSVGNLSH--SLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXX 253
K +G L+ +L + N IS +S LT LT + LG N+++ P+A
Sbjct: 230 K-DIGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISPLA--GLTA 284
Query: 254 XXXXXXEDNKLEGSIPDDICRLDELYELELGGNKLSGSIP-------------------- 293
+N+LE P I L L L L N +S P
Sbjct: 285 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 342
Query: 294 ACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNYFT-GPLPLEIGNLKVLIG 351
+ NL + LS G N+++ + PL NL I QL ++ +T P+ N K +
Sbjct: 343 SSLANLTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQAWTNAPV-----NYKANVS 395
Query: 352 IDFSMNNFSGVI 363
I ++ N +G +
Sbjct: 396 IPNTVKNVTGAL 407
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%)
Query: 305 LSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIP 364
L L N+ T +P N K + +++S+N + N+ L+ + S N + P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 365 TEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394
GLK+L L L N + +F DL
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDL 125
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 102 NLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYL 161
++ EL L GN F +P+ + N L++++L N S +F N+ L L L N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 162 TSSTPELSFLSSLSNCKSLTLIALSNN 188
P + KSL L++L N
Sbjct: 91 RCIPPR-----TFDGLKSLRLLSLHGN 112
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 220 ISEEISNLTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELY 279
+ +E+SN +LT I+L N+++ + N+L P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 280 ELELGGNKLSGSIPACFGNLIALRILSLGSNEL 312
L L GN +S F +L AL L++G+N L
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 275 LDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSN 333
+ +L L L N+L P F L +LR+LSL N+++ +P F +L + L I +N
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 96/399 (24%), Positives = 155/399 (38%), Gaps = 92/399 (23%)
Query: 28 ADLEQMSLWENNLRGEIPLE-IGNLQNLEELDLRQNKLVGIVPAAIFNVXXXXXXXXXXX 86
DL+Q++ + + G ++ + L NL +++ N+L I P
Sbjct: 38 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP---------LKNLTKLV 88
Query: 87 XXXXXXXXIADVR----LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIP 142
IAD+ L NL L+L+ N P + N + L+ LEL N+ S
Sbjct: 89 DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-- 144
Query: 143 NTFGNLRNLERLNLQDNYLTSSTP------------------ELSFLSSLSNCKSLTLIA 184
+ L +L++LN N +T P ++S L+ L+N +SL IA
Sbjct: 145 SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL--IA 202
Query: 185 LSNN----------------PLDGNLRKTSVGNLSH--SLEIFLMYNCNISGGISEEISN 226
+N L+GN K +G L+ +L + N IS +S
Sbjct: 203 TNNQISDITPLGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISN--LAPLSG 259
Query: 227 LTNLTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICRLDELYELELGGN 286
LT LT + LG N+++ P+A +N+LE P I L L L L N
Sbjct: 260 LTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 315
Query: 287 KLSGSIP--------------------ACFGNLIALRILSLGSNELTSI-PLTFWNLKDI 325
+S P + NL + LS G N+++ + PL NL I
Sbjct: 316 NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLA--NLTRI 373
Query: 326 LQLNISSNYFT-GPLPLEIGNLKVLIGIDFSMNNFSGVI 363
QL ++ +T P+ N K + I ++ N +G +
Sbjct: 374 TQLGLNDQAWTNAPV-----NYKANVSIPNTVKNVTGAL 407
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N+LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+EL L GN P + KL L L N + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 163 S 163
+
Sbjct: 186 T 186
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N+LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+EL L GN P + KL L L N + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 163 S 163
+
Sbjct: 186 T 186
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 263 KLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWN 321
KLE + D L +L L L N+L+ F L L L+L N+L SIP+ F N
Sbjct: 54 KLEPGVFDS---LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDN 110
Query: 322 LKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE 374
LK + + + F P E + +L ++ + + S V P GG+ N++
Sbjct: 111 LKSLTHIYL----FNNPWDCECSD--ILYLKNWIVQHASIVNPLGNGGVDNVK 157
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 5/88 (5%)
Query: 104 EELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS 163
+ L L+ N P + ++L+ L L N + F L L L L N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-K 101
Query: 164 STPELSFLSSLSNCKSLTLIALSNNPLD 191
S P + N KSLT I L NNP D
Sbjct: 102 SIP----MGVFDNLKSLTHIYLFNNPWD 125
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N+LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+EL L GN P + KL L L N + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 163 S 163
+
Sbjct: 186 T 186
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N+LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNQLTELP 164
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+EL L GN P + KL L L N + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 163 S 163
+
Sbjct: 186 T 186
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 122 FNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS-STPELSFLSSLSNCKSL 180
F+ +L +L+L + +L +L L L N + S + S LSSL
Sbjct: 51 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK---- 106
Query: 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKL 240
L+AL N +L +G+L E+ + +N S + E SNLTNL ++L NK+
Sbjct: 107 -LVALETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 241 NG 242
Sbjct: 164 QS 165
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N+LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELP 164
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+EL L GN P + KL L L N + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 163 S 163
+
Sbjct: 186 T 186
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 59/156 (37%), Gaps = 30/156 (19%)
Query: 23 EFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVXXXXXXX 82
E L +L+ + L +R +P I NLQNL+ L +R + L + PA
Sbjct: 178 EHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHH--------- 227
Query: 83 XXXXXXXXXXXXIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIP 142
LP LEEL L G P + L L L S +P
Sbjct: 228 -----------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 143 NTFGNLRNLERLNLQDNYLTSSTPELSFLSSL-SNC 177
L LE+L+L+ S P S ++ L +NC
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANC 304
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 25 GNLADLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGI 67
G+L L+++++ N ++ ++P NL NLE LDL NK+ I
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 122 FNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS-STPELSFLSSLSNCKSL 180
F+ +L +L+L + +L +L L L N + S + S LSSL
Sbjct: 50 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK---- 105
Query: 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKL 240
L+A+ N +L +G+L E+ + +N S + E SNLTNL ++L NK+
Sbjct: 106 -LVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 241 NG 242
Sbjct: 163 QS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 25 GNLADLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGI 67
G+L L+++++ N ++ ++P NL NLE LDL NK+ I
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 122 FNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS-STPELSFLSSLSNCKSL 180
F+ +L +L+L + +L +L L L N + S + S LSSL
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK---- 104
Query: 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKL 240
L+A+ N +L +G+L E+ + +N S + E SNLTNL ++L NK+
Sbjct: 105 -LVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 241 NG 242
Sbjct: 162 QS 163
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYL 161
L+EL L GN P + KL L L N+ + L NL+ L LQ+N L
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 80 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 137
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N LT +P
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELP 165
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYL 161
L+EL L GN P + KL L L N+ + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 25 GNLADLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGI 67
G+L L+++++ N ++ ++P NL NLE LDL NK+ I
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 122 FNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS-STPELSFLSSLSNCKSL 180
F+ +L +L+L + +L +L L L N + S + S LSSL
Sbjct: 50 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK---- 105
Query: 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKL 240
L+A+ N +L +G+L E+ + +N S + E SNLTNL ++L NK+
Sbjct: 106 -LVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 241 NG 242
Sbjct: 163 QS 164
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYL 161
L+EL L GN P + KL L L N+ + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+EL L GN P + KL L L N+ + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 163 S 163
+
Sbjct: 186 T 186
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 25 GNLADLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGI 67
G+L L+++++ N ++ ++P NL NLE LDL NK+ I
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 122 FNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS-STPELSFLSSLSNCKSL 180
F+ +L +L+L + +L +L L L N + S + S LSSL
Sbjct: 51 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK---- 106
Query: 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKL 240
L+A+ N +L +G+L E+ + +N S + E SNLTNL ++L NK+
Sbjct: 107 -LVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 241 NG 242
Sbjct: 164 QS 165
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 10 DNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGN----LQNLEELDLRQNKLV 65
+ FL + G F LA+LE ++L + NL G + GN L +LE L LR N +
Sbjct: 89 NQFLQLETGA----FNGLANLEVLTLTQCNLDGAVL--SGNFFKPLTSLEMLVLRDNNIK 142
Query: 66 GIVPAAIF 73
I PA+ F
Sbjct: 143 KIQPASFF 150
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 230 LTTINLGGNKLNGSIPIAXXXXXXXXXXXXEDNKLEGSIPDDICR-LDELYELELGGNKL 288
L T++L N+L S+P+ N+L S+P R L EL EL L GN+L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNEL 136
Query: 289 SGSIPACFGNLIALRILSLGSNELTSIP 316
P L LSL +N LT +P
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELP 164
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
L+EL L GN P + KL L L N+ + L NL+ L LQ+N L
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185
Query: 163 S 163
+
Sbjct: 186 T 186
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 29/132 (21%)
Query: 123 NASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTL 182
N +K++ LEL GN + L++++ L+L +T TP L+ LSN + L L
Sbjct: 83 NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYL 136
Query: 183 I--ALSN-NPLDG--NLRKTSVGNLSHSLEIFLMYNCNISGGISE--EISNLTNLTTINL 235
++N +PL G NL+ S+GN +S+ ++NL+ LTT+
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGN----------------AQVSDLTPLANLSKLTTLKA 180
Query: 236 GGNKLNGSIPIA 247
NK++ P+A
Sbjct: 181 DDNKISDISPLA 192
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 260 EDNKLEGSIPDDIC-RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP 316
E NKL+ S+P + +L +L +L L N++ F L L IL L N+L S+P
Sbjct: 36 ESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 103 LEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162
LEEL + GN+F P S L L ++ + S N F L +L LNL N L+
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 163 SSTPELSFLSSLSNCKSLTLIALSNNPLDGN 193
S +L + + L + L +NP + +
Sbjct: 280 SLPHDL-----FTPLRYLVELHLHHNPWNCD 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.139 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,207,559
Number of Sequences: 62578
Number of extensions: 519452
Number of successful extensions: 1704
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 391
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)