Query 038605
Match_columns 485
No_of_seqs 277 out of 3605
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 12:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-47 5.1E-52 408.9 30.7 432 18-458 154-610 (968)
2 PLN00113 leucine-rich repeat r 100.0 4E-47 8.6E-52 407.2 31.3 436 18-464 132-593 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.4E-38 3.1E-43 292.6 8.9 413 10-458 36-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.3E-38 2.9E-43 292.8 5.3 384 9-428 56-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.4E-36 3E-41 267.7 -14.8 424 11-455 74-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 6.2E-33 1.4E-37 257.8 -2.9 372 49-460 4-380 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 6.7E-33 1.5E-37 257.6 -5.3 358 9-406 11-373 (1255)
8 KOG0618 Serine/threonine phosp 100.0 2.5E-32 5.5E-37 264.4 -4.9 268 178-455 219-489 (1081)
9 KOG0472 Leucine-rich repeat pr 100.0 2.7E-32 5.9E-37 240.7 -15.0 428 14-464 54-527 (565)
10 KOG0618 Serine/threonine phosp 99.9 7.2E-29 1.6E-33 240.6 -5.3 222 229-455 242-465 (1081)
11 KOG4237 Extracellular matrix p 99.9 3.7E-27 7.9E-32 208.1 -2.9 299 8-313 49-359 (498)
12 PLN03210 Resistant to P. syrin 99.9 3.4E-23 7.4E-28 222.9 26.8 338 22-382 552-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 4.2E-23 9.1E-28 222.2 26.3 340 44-406 550-904 (1153)
14 KOG4237 Extracellular matrix p 99.8 7.9E-23 1.7E-27 180.9 -4.8 277 200-477 63-383 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.2E-18 2.7E-23 174.7 18.1 178 229-434 283-460 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.1E-18 4.6E-23 173.1 17.1 262 29-365 202-463 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 5.1E-20 1.1E-24 173.1 -0.2 232 223-454 46-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 4.6E-17 1E-21 164.5 14.2 139 301-454 284-427 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 4.4E-19 9.5E-24 166.7 -0.8 282 129-431 2-319 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 3.2E-16 6.9E-21 158.5 13.8 247 125-408 178-428 (754)
21 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.3E-23 137.2 -5.5 177 276-456 33-213 (264)
22 KOG0617 Ras suppressor protein 99.5 1.7E-16 3.6E-21 125.0 -5.1 152 253-408 34-186 (264)
23 KOG1909 Ran GTPase-activating 99.3 6.4E-14 1.4E-18 123.2 -5.6 42 224-265 88-133 (382)
24 KOG1259 Nischarin, modulator o 99.3 2E-12 4.4E-17 111.4 2.5 124 324-453 285-410 (490)
25 KOG3207 Beta-tubulin folding c 99.2 1.4E-12 3.1E-17 118.0 0.5 211 123-337 119-340 (505)
26 KOG1909 Ran GTPase-activating 99.2 1.1E-12 2.4E-17 115.5 -0.9 131 323-453 157-309 (382)
27 KOG3207 Beta-tubulin folding c 99.2 1.6E-12 3.5E-17 117.7 -0.2 222 19-265 112-339 (505)
28 KOG4658 Apoptotic ATPase [Sign 99.2 1.8E-11 3.9E-16 126.4 6.9 153 26-185 521-675 (889)
29 KOG1259 Nischarin, modulator o 99.2 4.1E-12 8.8E-17 109.6 1.8 208 221-437 207-416 (490)
30 PLN03150 hypothetical protein; 99.2 4.3E-11 9.3E-16 121.0 8.2 114 348-461 419-534 (623)
31 COG4886 Leucine-rich repeat (L 99.2 3.9E-11 8.4E-16 116.0 6.5 174 228-408 116-290 (394)
32 PF14580 LRR_9: Leucine-rich r 99.1 5.1E-11 1.1E-15 98.5 4.8 106 301-408 20-126 (175)
33 PF14580 LRR_9: Leucine-rich r 99.1 9.1E-11 2E-15 97.0 5.7 128 25-157 16-148 (175)
34 KOG0532 Leucine-rich repeat (L 99.1 2.2E-12 4.7E-17 120.6 -5.5 194 228-430 75-271 (722)
35 KOG4658 Apoptotic ATPase [Sign 99.1 8.3E-11 1.8E-15 121.6 4.5 146 10-158 528-677 (889)
36 COG4886 Leucine-rich repeat (L 99.0 3.9E-10 8.5E-15 109.1 7.9 174 252-432 116-290 (394)
37 KOG0532 Leucine-rich repeat (L 99.0 9.3E-12 2E-16 116.5 -5.3 194 250-452 73-270 (722)
38 PF13855 LRR_8: Leucine rich r 98.9 1.4E-09 2.9E-14 73.9 4.3 61 28-88 1-61 (61)
39 PLN03150 hypothetical protein; 98.9 4.6E-09 9.9E-14 106.4 8.6 114 324-437 419-533 (623)
40 KOG0531 Protein phosphatase 1, 98.8 5.7E-10 1.2E-14 108.0 -0.4 219 224-454 91-317 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 3E-09 6.4E-14 72.2 3.1 59 372-430 2-60 (61)
42 KOG2120 SCF ubiquitin ligase, 98.8 1.2E-10 2.5E-15 100.6 -5.1 181 102-287 186-374 (419)
43 KOG0531 Protein phosphatase 1, 98.8 8.8E-10 1.9E-14 106.7 -1.5 217 226-454 70-289 (414)
44 KOG1859 Leucine-rich repeat pr 98.7 2.3E-10 5.1E-15 110.2 -6.8 128 324-458 165-295 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.7 3.6E-10 7.8E-15 97.7 -5.1 85 29-113 186-272 (419)
46 KOG2982 Uncharacterized conser 98.6 6.8E-09 1.5E-13 89.9 0.5 152 204-355 121-287 (418)
47 KOG4341 F-box protein containi 98.6 1E-09 2.2E-14 99.3 -6.0 280 28-310 138-436 (483)
48 COG5238 RNA1 Ran GTPase-activa 98.5 1E-08 2.2E-13 87.7 -1.6 42 224-265 210-255 (388)
49 KOG2982 Uncharacterized conser 98.5 2.9E-08 6.4E-13 86.1 0.1 105 206-311 47-157 (418)
50 KOG4341 F-box protein containi 98.5 3.7E-09 8E-14 95.8 -5.8 297 150-451 139-461 (483)
51 KOG1859 Leucine-rich repeat pr 98.4 1.8E-09 3.8E-14 104.3 -9.3 127 277-408 165-292 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.4 1.2E-08 2.7E-13 87.2 -4.2 139 223-361 87-256 (388)
53 KOG3665 ZYG-1-like serine/thre 98.1 1.1E-06 2.3E-11 89.2 2.1 59 75-135 147-205 (699)
54 KOG1644 U2-associated snRNP A' 98.1 5.3E-06 1.1E-10 68.3 5.5 104 53-159 43-150 (233)
55 PRK15386 type III secretion pr 98.0 2.9E-05 6.2E-10 72.7 9.4 77 224-312 48-124 (426)
56 KOG3665 ZYG-1-like serine/thre 98.0 6.5E-07 1.4E-11 90.7 -1.5 151 276-428 122-284 (699)
57 KOG4579 Leucine-rich repeat (L 98.0 2.8E-07 6.1E-12 70.7 -3.4 114 345-461 51-165 (177)
58 PF12799 LRR_4: Leucine Rich r 97.9 6.7E-06 1.5E-10 50.9 2.3 37 29-66 2-38 (44)
59 KOG1644 U2-associated snRNP A' 97.9 2.1E-05 4.5E-10 64.9 5.0 124 325-452 21-150 (233)
60 PF13306 LRR_5: Leucine rich r 97.8 7.5E-05 1.6E-09 59.5 7.3 106 47-158 7-112 (129)
61 PRK15386 type III secretion pr 97.8 6.9E-05 1.5E-09 70.3 7.6 136 273-429 49-187 (426)
62 PF12799 LRR_4: Leucine Rich r 97.7 3.2E-05 6.9E-10 47.9 3.1 36 301-336 2-37 (44)
63 KOG4579 Leucine-rich repeat (L 97.7 1.7E-06 3.6E-11 66.5 -3.3 90 226-317 51-140 (177)
64 PF13306 LRR_5: Leucine rich r 97.6 0.00026 5.5E-09 56.4 8.1 122 24-152 8-129 (129)
65 KOG2739 Leucine-rich acidic nu 97.5 4.9E-05 1.1E-09 65.5 2.2 68 20-89 35-104 (260)
66 KOG2123 Uncharacterized conser 97.5 3.9E-06 8.4E-11 72.5 -4.6 100 250-353 17-123 (388)
67 KOG1947 Leucine rich repeat pr 97.4 2.2E-05 4.7E-10 78.4 -1.8 61 251-311 242-306 (482)
68 KOG2123 Uncharacterized conser 97.3 8.7E-06 1.9E-10 70.4 -5.1 102 26-131 17-123 (388)
69 KOG1947 Leucine rich repeat pr 97.1 9E-05 1.9E-09 74.0 -1.1 34 302-335 403-439 (482)
70 KOG2739 Leucine-rich acidic nu 97.0 0.00034 7.4E-09 60.4 2.0 88 296-384 39-129 (260)
71 KOG3864 Uncharacterized conser 95.2 0.002 4.4E-08 53.5 -2.3 81 325-405 103-186 (221)
72 PF00560 LRR_1: Leucine Rich R 94.9 0.013 2.9E-07 29.9 1.0 19 30-49 2-20 (22)
73 KOG4308 LRR-containing protein 94.3 0.0002 4.4E-09 69.7 -12.2 107 230-336 89-217 (478)
74 KOG3864 Uncharacterized conser 93.9 0.0078 1.7E-07 50.2 -1.8 84 150-238 102-186 (221)
75 PF00560 LRR_1: Leucine Rich R 93.9 0.038 8.3E-07 28.1 1.4 21 53-74 1-21 (22)
76 PF13504 LRR_7: Leucine rich r 93.5 0.048 1E-06 25.7 1.2 12 302-313 3-14 (17)
77 KOG4308 LRR-containing protein 92.5 0.00095 2E-08 65.2 -10.9 210 29-240 88-330 (478)
78 KOG0473 Leucine-rich repeat pr 89.3 0.0085 1.9E-07 51.0 -6.5 87 343-432 38-124 (326)
79 smart00369 LRR_TYP Leucine-ric 88.4 0.33 7.1E-06 25.8 1.5 15 52-66 2-16 (26)
80 smart00370 LRR Leucine-rich re 88.4 0.33 7.1E-06 25.8 1.5 15 52-66 2-16 (26)
81 PF13516 LRR_6: Leucine Rich r 86.0 0.29 6.4E-06 25.4 0.4 10 103-112 4-13 (24)
82 TIGR00864 PCC polycystin catio 83.9 0.55 1.2E-05 54.6 1.7 35 425-460 1-37 (2740)
83 KOG0473 Leucine-rich repeat pr 83.8 0.032 6.8E-07 47.7 -6.0 86 72-161 38-123 (326)
84 KOG3763 mRNA export factor TAP 78.5 0.98 2.1E-05 44.0 1.1 81 368-448 215-307 (585)
85 smart00364 LRR_BAC Leucine-ric 74.9 2.3 4.9E-05 22.6 1.4 18 300-317 2-19 (26)
86 KOG3763 mRNA export factor TAP 74.8 1.3 2.9E-05 43.2 0.9 64 345-408 216-283 (585)
87 KOG4242 Predicted myosin-I-bin 70.6 43 0.00093 32.6 9.6 59 373-431 415-480 (553)
88 smart00365 LRR_SD22 Leucine-ri 70.2 3.9 8.5E-05 21.8 1.7 14 52-65 2-15 (26)
89 smart00368 LRR_RI Leucine rich 66.6 3.4 7.3E-05 22.4 1.0 11 78-88 4-14 (28)
90 KOG4242 Predicted myosin-I-bin 60.6 55 0.0012 31.9 8.3 18 52-69 165-182 (553)
91 smart00367 LRR_CC Leucine-rich 55.1 9 0.00019 20.1 1.4 16 394-409 1-17 (26)
92 smart00082 LRRCT Leucine rich 31.8 21 0.00045 22.3 0.6 9 452-460 1-9 (51)
93 PF05725 FNIP: FNIP Repeat; I 20.6 99 0.0021 18.7 2.1 7 396-402 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-47 Score=408.95 Aligned_cols=432 Identities=34% Similarity=0.551 Sum_probs=313.4
Q ss_pred cCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhh
Q 038605 18 GEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIAD 97 (485)
Q Consensus 18 ~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 97 (485)
+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..+.++++|++|++++|.+....+..+.
T Consensus 154 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 46788888888889998888888878888888888888888888888877888888888888888888887765555544
Q ss_pred hcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCC
Q 038605 98 VRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNC 177 (485)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 177 (485)
.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+... .+..+..+
T Consensus 234 -~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l 307 (968)
T PLN00113 234 -GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-----IPELVIQL 307 (968)
T ss_pred -cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-----CChhHcCC
Confidence 488888888888888777788888888888888888888777777777788888888888776654 33345566
Q ss_pred CCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCc-------------
Q 038605 178 KSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSI------------- 244 (485)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~------------- 244 (485)
++|+.|++++|.+.+..+ ..+..+ ++|+.|++.+|.+....+..+..+++|+.|++++|.+.+..
T Consensus 308 ~~L~~L~l~~n~~~~~~~-~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIP-VALTSL-PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred CCCcEEECCCCccCCcCC-hhHhcC-CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 667777776666554333 223333 45666666666655555555555555555555555554444
Q ss_pred -----------cccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCC
Q 038605 245 -----------PIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELT 313 (485)
Q Consensus 245 -----------~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 313 (485)
|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 444444555555555555555555555555566666666666555555555555666666666666655
Q ss_pred C-CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCcccc
Q 038605 314 S-IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFG 392 (485)
Q Consensus 314 ~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 392 (485)
. +|.. ...++|+.|++++|++.+..+..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..+.
T Consensus 466 ~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 466 GGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred eecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 4 3332 3446777777777777777777777788888888888888877888888888888888888888877888888
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCC
Q 038605 393 DLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 393 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
.+++|+.|++++|++.+.+|..+..+++|++|++++|++.+.+|..+.+..+...++.|||.+|+.
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~ 610 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCC
Confidence 888888888888888888888888888888888888888888888888888888888888888875
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-47 Score=407.18 Aligned_cols=436 Identities=36% Similarity=0.586 Sum_probs=360.3
Q ss_pred cCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhh
Q 038605 18 GEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIAD 97 (485)
Q Consensus 18 ~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 97 (485)
+.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+....+....
T Consensus 132 ~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 209 (968)
T PLN00113 132 GSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209 (968)
T ss_pred cccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc
Confidence 45564 4588999999999999988999999999999999999999888999999999999999999998876666555
Q ss_pred hcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCC
Q 038605 98 VRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNC 177 (485)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 177 (485)
.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+. .+..+..+
T Consensus 210 -~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l 283 (968)
T PLN00113 210 -QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-----IPPSIFSL 283 (968)
T ss_pred -CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-----CchhHhhc
Confidence 499999999999999988999999999999999999999988999999999999999999988765 44568889
Q ss_pred CCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeE
Q 038605 178 KSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYL 257 (485)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (485)
++|+.|++++|.+.+..+ ..+..+ ++|+.|++.+|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 284 ~~L~~L~Ls~n~l~~~~p-~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 361 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIP-ELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVL 361 (968)
T ss_pred cCcCEEECcCCeeccCCC-hhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEE
Confidence 999999999998876554 334444 789999999999998889999999999999999999998888888899999999
Q ss_pred eccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC-CCcccc----------------
Q 038605 258 GLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS-IPLTFW---------------- 320 (485)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~---------------- 320 (485)
++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++. +|..+.
T Consensus 362 ~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 441 (968)
T PLN00113 362 DLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ 441 (968)
T ss_pred ECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc
Confidence 999998877666666666666666666666555555555555555555555555543 333344
Q ss_pred --------CCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCcccc
Q 038605 321 --------NLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFG 392 (485)
Q Consensus 321 --------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 392 (485)
.+++|+.|++++|++.+..+..+ ..++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 520 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520 (968)
T ss_pred CccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHc
Confidence 44555555555555544433322 346677888888888877888888899999999999999988999999
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCCCCCcc
Q 038605 393 DLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLQYY 464 (485)
Q Consensus 393 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p~~~~~ 464 (485)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|.. ..++.|+.+++++|++.+..|....+
T Consensus 521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 9999999999999999999999999999999999999999999976 78899999999999977666765443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-38 Score=292.62 Aligned_cols=413 Identities=22% Similarity=0.244 Sum_probs=245.8
Q ss_pred cccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCC--CCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 10 DNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNL--QNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 10 ~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
+++..-.....|+.... .-+.|+.++..+.......+.+. +.-+.|++++|++.++.+..|.++++|+.+++..|.
T Consensus 36 vd~ga~~~~~cpa~c~c--~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~ 113 (873)
T KOG4194|consen 36 VDAGAGDLSECPATCPC--NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE 113 (873)
T ss_pred cccCCCccccCCCcCCC--CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch
Confidence 33333445566665533 45778888887764433344443 234569999999988888888899999999999998
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPE 167 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 167 (485)
++..+.... ...+|+.|++.+|.+.......+..++.|++|+++.|.++.+....|..-.++++|++++|.+++...
T Consensus 114 Lt~IP~f~~--~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~- 190 (873)
T KOG4194|consen 114 LTRIPRFGH--ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET- 190 (873)
T ss_pred hhhcccccc--cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc-
Confidence 875433332 26679999999998887777788888999999999998887766777777889999999998888743
Q ss_pred ccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCcccc
Q 038605 168 LSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIA 247 (485)
Q Consensus 168 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 247 (485)
..|..+.+|..|.++.|.++. ..+..|..+++|+.|++..|.+.-.....
T Consensus 191 ----~~F~~lnsL~tlkLsrNritt--------------------------Lp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 191 ----GHFDSLNSLLTLKLSRNRITT--------------------------LPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred ----ccccccchheeeecccCcccc--------------------------cCHHHhhhcchhhhhhccccceeeehhhh
Confidence 346666677777777776652 22333444555555555555544222334
Q ss_pred ccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCc
Q 038605 248 LGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDIL 326 (485)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~ 326 (485)
|+.+++|+.|.+..|.+.......|-.+.++++|+++.|++.....+.+.++++|+.|++++|.|..+.. .+..+++|+
T Consensus 241 FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 4555555555555555544444445555555555555555544444444555555555555555555322 223344555
Q ss_pred EEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccccc---CCccccCCCCCCEEeCC
Q 038605 327 QLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGS---IPDSFGDLISLKFLNLS 403 (485)
Q Consensus 327 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~ 403 (485)
+|+|+.|+++......|..+.+|++|+|+.|.++.....+|..+++|++||+++|.+... ....|.++++|+.|++.
T Consensus 321 ~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence 555555555544445555555555555555555544444455555555555555554321 12234445555555555
Q ss_pred CCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCC
Q 038605 404 NNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 404 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~ 458 (485)
+|++......+|.+++.|++|++.+|.|...-|.. ..+ .|++|.+..-.++|+|
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 55555444445555555555555555554333333 333 5555555555555655
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-38 Score=292.84 Aligned_cols=384 Identities=23% Similarity=0.248 Sum_probs=295.6
Q ss_pred ccccccccccCC-----ChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEc
Q 038605 9 SDNFLTFQLGEI-----PREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQL 83 (485)
Q Consensus 9 ~~~~~~~~~~~l-----p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L 83 (485)
..+|.++.++.+ +..+ ....+.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|
T Consensus 56 lldcs~~~lea~~~~~l~g~l--p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 56 LLDCSDRELEAIDKSRLKGFL--PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred eeecCccccccccccccCCcC--ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 356667777765 3333 346688999999999888888999999999999999998 56766666778999999
Q ss_pred cCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCcccc
Q 038605 84 QNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTS 163 (485)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 163 (485)
.+|.++......... ++.||.||++.|.++..-...+..-.++++|++++|.|+......|..+.+|..|.++.|+++.
T Consensus 133 ~~N~I~sv~se~L~~-l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 133 RHNLISSVTSEELSA-LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eccccccccHHHHHh-HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 999998766666654 9999999999999985545556666899999999999999988999999999999999999999
Q ss_pred CCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCC
Q 038605 164 STPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGS 243 (485)
Q Consensus 164 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 243 (485)
.+. ..|+.+++|+.|++..|.+.... .-.|.++++|+.|.+..|++...
T Consensus 212 Lp~-----r~Fk~L~~L~~LdLnrN~irive--------------------------~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 212 LPQ-----RSFKRLPKLESLDLNRNRIRIVE--------------------------GLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cCH-----HHhhhcchhhhhhccccceeeeh--------------------------hhhhcCchhhhhhhhhhcCcccc
Confidence 854 56888999999998888764211 12355667777777777777666
Q ss_pred ccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCC
Q 038605 244 IPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNL 322 (485)
Q Consensus 244 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~ 322 (485)
....|..+.++++|++..|+++...-.++.++..|+.|+++.|.|...-.+.+..+++|+.|++++|++++++. .+..+
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 66667777777777777777776666677777777777777777776666777777777777777777777654 45566
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCccccc---CcccccCCCCCCEEECCCCcccccCCccccCCCCCCE
Q 038605 323 KDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGV---IPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKF 399 (485)
Q Consensus 323 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 399 (485)
..|++|.|+.|.++.....+|..+.+|++|+|.+|.++.. ....|.++++|+.|++.||+++...-.+|.+++.|++
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 7777777777777766666777777778888877776543 2345677788888888888887555667788888888
Q ss_pred EeCCCCcccccCcccccCCCCCCceeCCC
Q 038605 400 LNLSNNNLFGAIPASLEKLSYLEDLNLSF 428 (485)
Q Consensus 400 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 428 (485)
|+|.+|.|...-+++|..+ .|++|-+..
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcc
Confidence 8888888877777777777 777776644
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=1.4e-36 Score=267.68 Aligned_cols=424 Identities=27% Similarity=0.436 Sum_probs=306.2
Q ss_pred ccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcccc
Q 038605 11 NFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLG 90 (485)
Q Consensus 11 ~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~ 90 (485)
+...+.+.++|++++++..+..++.+++++. .+|+.+..++.|+.+++++|.+. ..++.++.+-.|..++..+|.+..
T Consensus 74 ~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~s 151 (565)
T KOG0472|consen 74 NVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQISS 151 (565)
T ss_pred EeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccccccc
Confidence 3345667777777777777777777777776 77777777778888888777776 456667777777777777777775
Q ss_pred ccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccc
Q 038605 91 CLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSF 170 (485)
Q Consensus 91 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 170 (485)
..+... .+.+|..+++.+|.+. ..|....+++.|++++...|.+. ..|..++.+..|..|++..|.+...
T Consensus 152 lp~~~~--~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~l------ 221 (565)
T KOG0472|consen 152 LPEDMV--NLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFL------ 221 (565)
T ss_pred CchHHH--HHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccC------
Confidence 444444 3677777777777777 55555555777888877776665 5566678888888888888877654
Q ss_pred cccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccC
Q 038605 171 LSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGK 250 (485)
Q Consensus 171 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 250 (485)
..|.+|..|+.++++.|.+. ..+......+ +++.+|+++.+++. ..|..+..+.+|++||+++|.++ ..|..+++
T Consensus 222 -Pef~gcs~L~Elh~g~N~i~-~lpae~~~~L-~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 222 -PEFPGCSLLKELHVGENQIE-MLPAEHLKHL-NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred -CCCCccHHHHHHHhcccHHH-hhHHHHhccc-ccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 35778888888888777654 2222333334 67788888888776 45566777788888888888887 56666777
Q ss_pred CCCCCeEeccCccCCC-------------------------------------C-CC---cccCCCCCCCEEEccCCcCc
Q 038605 251 LQKLQYLGLEDNKLEG-------------------------------------S-IP---DDICRLDELYELELGGNKLS 289 (485)
Q Consensus 251 ~~~L~~L~l~~~~~~~-------------------------------------~-~~---~~l~~~~~L~~L~l~~~~~~ 289 (485)
+ +|+.|-+-+|.+.. . .+ .....+.+.+.|++++-.++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 7 77777777765310 0 00 01122345666777776666
Q ss_pred ccccccccCC--CCCcEEeCCCCcCCCCCccccCCCCCcE-EEccCCcCCCCCCccccCCCCCCeEEccCCcccccCccc
Q 038605 290 GSIPACFGNL--IALRILSLGSNELTSIPLTFWNLKDILQ-LNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTE 366 (485)
Q Consensus 290 ~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~L~~-L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 366 (485)
....+.|..- .-.+..+++.|++.++|..+..+..+.. +.+++|.+. -.+..+..+++|.-|++++|.+. .+|..
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchh
Confidence 4444444322 2367777888888877766555554433 344555444 56667888999999999999887 56777
Q ss_pred ccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCc
Q 038605 367 IGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSA 446 (485)
Q Consensus 367 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~ 446 (485)
+..+..|+.|+++.|++. ..|+.+..+..++.+-.++|++....+.++..+.+|.+||+.+|.+....|..+.+++|+.
T Consensus 454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRH 532 (565)
T ss_pred hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeE
Confidence 888888999999999998 8899888888999999999999977888899999999999999999855555599999999
Q ss_pred ccccCCCCc
Q 038605 447 ESFEGNELL 455 (485)
Q Consensus 447 l~l~~np~~ 455 (485)
|.+.|||+.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 999999976
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.2e-33 Score=257.80 Aligned_cols=372 Identities=25% Similarity=0.382 Sum_probs=289.0
Q ss_pred CCCCCCCEEeccCccce-ecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCC
Q 038605 49 GNLQNLEELDLRQNKLV-GIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKL 127 (485)
Q Consensus 49 ~~l~~L~~L~L~~~~i~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 127 (485)
+-+|-.+-.|+++|+++ +..|.....+..++.|.|....+.. .+.... .+.+|++|.+.+|++. .+-..+..++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~-vPeEL~-~lqkLEHLs~~HN~L~-~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ-VPEELS-RLQKLEHLSMAHNQLI-SVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh-ChHHHH-HHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence 34566778888888887 5577788888888888888877754 333333 4888888888888776 555667778888
Q ss_pred cEEEccCcccc-cccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccc
Q 038605 128 SILELVGNSFS-GFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSL 206 (485)
Q Consensus 128 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 206 (485)
+.+.++.|++. +-+|..+-++..|..|++++|++...+ ..+..-+++-.|++++|.+.
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP------~~LE~AKn~iVLNLS~N~Ie--------------- 139 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVP------TNLEYAKNSIVLNLSYNNIE--------------- 139 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhhhcc------hhhhhhcCcEEEEcccCccc---------------
Confidence 88888877654 235556677888888888888877643 34555556666666666543
Q ss_pred cEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCC
Q 038605 207 EIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGN 286 (485)
Q Consensus 207 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (485)
......+.++..|-.|++++|.+. .+|.....+..|+.|.+++|.+.......+..+++|+.|.+++.
T Consensus 140 -----------tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 140 -----------TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred -----------cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 333344566777778888888886 56666777888888899988877666666777888888888887
Q ss_pred cCc-ccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcc
Q 038605 287 KLS-GSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPT 365 (485)
Q Consensus 287 ~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 365 (485)
+-+ ..+|.++..+.+|..++++.|.+..+|.++.++++|+.|++++|.++. .......+.+|++|+++.|+++ .+|+
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~ 285 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPD 285 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchH
Confidence 543 356777888889999999999999999998899999999999999884 3345567888999999999988 6788
Q ss_pred cccCCCCCCEEECCCCcccc-cCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC-CCCCCC
Q 038605 366 EIGGLKNLEYLFLGYNRLRG-SIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGN 443 (485)
Q Consensus 366 ~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~ 443 (485)
++..+++|+.|.+.+|+++. -+|..++.+.+|+.+..++|.+. ..|+++..|..|+.|.++.|++. .+|. ++.++.
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~ 363 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPD 363 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCC
Confidence 89999999999999998763 46788999999999999988887 88999999999999999999987 5665 489999
Q ss_pred CCcccccCCCCccCCCC
Q 038605 444 FSAESFEGNELLCGSPN 460 (485)
Q Consensus 444 L~~l~l~~np~~c~~p~ 460 (485)
|+.|++..||.+.-+|.
T Consensus 364 l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 364 LKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cceeeccCCcCccCCCC
Confidence 99999999998877743
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.7e-33 Score=257.60 Aligned_cols=358 Identities=26% Similarity=0.407 Sum_probs=233.7
Q ss_pred ccccccc--cccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 9 SDNFLTF--QLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 9 ~~~~~~~--~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
++++.++ .-+.+|.....|++++.|.|.+.++. .+|+.++.+.+|++|++++|++.. ....+..++.||.+.++.|
T Consensus 11 GvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred cccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhcc
Confidence 4455543 23577888888888888888888887 778888888888888888888764 3445677888888888887
Q ss_pred ccccc-cchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCC
Q 038605 87 SLLGC-LSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSST 165 (485)
Q Consensus 87 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 165 (485)
.+... ++...+ ++..|..||+++|++. ..|..+...+++-.|++++|+|..+....|.++..|-.|++++|++...+
T Consensus 89 ~LKnsGiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP 166 (1255)
T KOG0444|consen 89 NLKNSGIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP 166 (1255)
T ss_pred ccccCCCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence 76532 334444 4788888888888877 77888888888888888888887666666778888888888888877654
Q ss_pred CCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCC-CCc
Q 038605 166 PELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLN-GSI 244 (485)
Q Consensus 166 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~ 244 (485)
+ ....+..|+.|.+++|++.- ..+ ..+..+.+|+.|++++..-+ ..+
T Consensus 167 P------Q~RRL~~LqtL~Ls~NPL~h----fQL----------------------rQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 167 P------QIRRLSMLQTLKLSNNPLNH----FQL----------------------RQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred H------HHHHHhhhhhhhcCCChhhH----HHH----------------------hcCccchhhhhhhcccccchhhcC
Confidence 3 45566667777777766431 011 11234566677777776544 345
Q ss_pred cccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCC
Q 038605 245 PIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKD 324 (485)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 324 (485)
|..+..+.+|..++++.|.+. ..|+.+..+++|+.|++++|.+++ .......-.+|++|+++.|+++.+|.++..+++
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~k 292 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTK 292 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHH
Confidence 666777777777777777776 667777777777777777777763 223334455677777777777777777777777
Q ss_pred CcEEEccCCcCCCC-CCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCC
Q 038605 325 ILQLNISSNYFTGP-LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLS 403 (485)
Q Consensus 325 L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 403 (485)
|+.|.+.+|+++-. +|..++.+.+|+.+..++|.+. ..|+.+..|.+|+.|.++.|++. .+|+++--++.|+.||++
T Consensus 293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred HHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeecc
Confidence 77777776665421 2333444444444444444443 33444444555555555554444 444444444555555555
Q ss_pred CCc
Q 038605 404 NNN 406 (485)
Q Consensus 404 ~~~ 406 (485)
.|+
T Consensus 371 eNp 373 (1255)
T KOG0444|consen 371 ENP 373 (1255)
T ss_pred CCc
Confidence 444
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.5e-32 Score=264.43 Aligned_cols=268 Identities=28% Similarity=0.349 Sum_probs=202.7
Q ss_pred CCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeE
Q 038605 178 KSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYL 257 (485)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 257 (485)
++|+.|+.+.|.+.. ......|.+++.++++.+.+.. +|.|+..+.+|+.+....|.+. ..+..+...++|+.|
T Consensus 219 ~~l~~L~a~~n~l~~----~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTT----LDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSL 292 (1081)
T ss_pred cchheeeeccCccee----eccccccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHH
Confidence 566666666666651 2333455778888888888774 4488888899999998888885 666677778888888
Q ss_pred eccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCC-CCcEEeCCCCcCCCCCcc-ccCCCCCcEEEccCCcC
Q 038605 258 GLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLI-ALRILSLGSNELTSIPLT-FWNLKDILQLNISSNYF 335 (485)
Q Consensus 258 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l 335 (485)
.+..|.+. ..|....++..|++|++..|.+.......+.... +|+.|+.+.+++...|.. -...+.|+.|.+.+|.+
T Consensus 293 ~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred Hhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 88888887 5565677788999999999888754443343333 377777777777776642 22356788888888888
Q ss_pred CCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccc
Q 038605 336 TGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASL 415 (485)
Q Consensus 336 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 415 (485)
++.....+.+...|+.|++++|++.......+.++..|++|++|||+++ .+|..+..++.|+.|...+|.+. ..| .+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 8877777888888999999998888655567788888889999999888 66778888888888888888887 666 67
Q ss_pred cCCCCCCceeCCCCcccccCCCCCCC-CCCCcccccCCCCc
Q 038605 416 EKLSYLEDLNLSFNKLEGEIPRGGSF-GNFSAESFEGNELL 455 (485)
Q Consensus 416 ~~l~~L~~L~l~~n~~~~~~p~~~~~-~~L~~l~l~~np~~ 455 (485)
..++.|+.+|++.|+++...-....+ ++|+.|+++||+|.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 78888888999888887544334334 88888999988863
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2.7e-32 Score=240.71 Aligned_cols=428 Identities=29% Similarity=0.401 Sum_probs=318.0
Q ss_pred cccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccc
Q 038605 14 TFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLS 93 (485)
Q Consensus 14 ~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 93 (485)
.+.+..+-..+.++..+.+|++.++.+. .+|.+++.+..++.++.++|++. .+|+.+.++.+|+.++.+.|.+....+
T Consensus 54 ~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~ 131 (565)
T KOG0472|consen 54 HNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPD 131 (565)
T ss_pred cCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCc
Confidence 4566677777778888888888888887 67777888888888888888877 577778888888888888888776555
Q ss_pred hhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCcccccc
Q 038605 94 SIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSS 173 (485)
Q Consensus 94 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 173 (485)
... .+-.|+.++..+|++. ..|.++.++.+|..+++.++.+....+..+. ++.|++++...|.+...+ ..
T Consensus 132 ~i~--~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP------~~ 201 (565)
T KOG0472|consen 132 SIG--RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLP------PE 201 (565)
T ss_pred hHH--HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCC------hh
Confidence 554 4778888888888887 7788888888888888888888866555555 889999999988887754 45
Q ss_pred ccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCC
Q 038605 174 LSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQK 253 (485)
Q Consensus 174 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 253 (485)
++.+.+|..|++..|.+.... .|..+ +.++.+.++.+.+..........++++..||+.+|.+. +.|..+..+.+
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP---ef~gc-s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP---EFPGC-SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hcchhhhHHHHhhhcccccCC---CCCcc-HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 788888999999888875322 33333 66888888888887655566668899999999999998 77888888899
Q ss_pred CCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccc-------------------------------------
Q 038605 254 LQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACF------------------------------------- 296 (485)
Q Consensus 254 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~------------------------------------- 296 (485)
|.+|++++|.++ ..|-.++++ .|+.|-+.+|++.....+.+
T Consensus 277 L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~ 354 (565)
T KOG0472|consen 277 LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSES 354 (565)
T ss_pred hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCc
Confidence 999999999998 667778888 89999999887642111000
Q ss_pred ----cCCCCCcEEeCCCCcCCCCCccccCCCC---CcEEEccCCcCCCCCCccccCCCCCC-eEEccCCcccccCccccc
Q 038605 297 ----GNLIALRILSLGSNELTSIPLTFWNLKD---ILQLNISSNYFTGPLPLEIGNLKVLI-GIDFSMNNFSGVIPTEIG 368 (485)
Q Consensus 297 ----~~~~~L~~L~l~~~~l~~~~~~~~~~~~---L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~ 368 (485)
....+.+.|++++-+++.+|...+...+ .+.++++.|++. ..|..+..+..+. .+.+++|.++ ..+..++
T Consensus 355 ~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~ 432 (565)
T KOG0472|consen 355 FPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS 432 (565)
T ss_pred ccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence 0112345555555555655553333222 555666666655 3333333333322 2444444444 4566788
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC-CCCCCCCCcc
Q 038605 369 GLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGNFSAE 447 (485)
Q Consensus 369 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~L~~l 447 (485)
.+++|..|++++|.+. .+|..++.+..|+.|+++.|++. .+|+.+.....++.+-.++|++...-|. ...+.+|..|
T Consensus 433 ~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tL 510 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTL 510 (565)
T ss_pred hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhccee
Confidence 8999999999999887 78888999999999999999998 8899988888899888888998655555 3899999999
Q ss_pred cccCCCCccCCCCCCcc
Q 038605 448 SFEGNELLCGSPNLQYY 464 (485)
Q Consensus 448 ~l~~np~~c~~p~~~~~ 464 (485)
++.+|.....+|...-+
T Consensus 511 DL~nNdlq~IPp~Lgnm 527 (565)
T KOG0472|consen 511 DLQNNDLQQIPPILGNM 527 (565)
T ss_pred ccCCCchhhCChhhccc
Confidence 99999866655655443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=7.2e-29 Score=240.63 Aligned_cols=222 Identities=29% Similarity=0.399 Sum_probs=142.6
Q ss_pred CCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCC
Q 038605 229 NLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLG 308 (485)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (485)
+|+.++++.+.+. ..|.|+..+.+|+.+...+|.++ ..|..+....+|+.|.+..|.+. ..+....+..+|++|++.
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 4444444444444 23344444444444444444443 33333444444444444444443 233333444455555555
Q ss_pred CCcCCCCCccccC-C-CCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccccc
Q 038605 309 SNELTSIPLTFWN-L-KDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGS 386 (485)
Q Consensus 309 ~~~l~~~~~~~~~-~-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 386 (485)
.|.+..+|..+.. . .+|+.+..+.+++.......-...+.|+.|.+.+|.+++.....+.++++|+.|++++|++...
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 5555544442211 1 1133344444444322211112345678899999999987777888999999999999999844
Q ss_pred CCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCc
Q 038605 387 IPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELL 455 (485)
Q Consensus 387 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~ 455 (485)
....+.++..|++|+|++|++. .+|..+..++.|++|...+|.+. .+|....++.|+.+|++-|..-
T Consensus 399 pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhh
Confidence 4456788999999999999998 78899999999999999999997 8888899999999999988633
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=3.7e-27 Score=208.06 Aligned_cols=299 Identities=25% Similarity=0.221 Sum_probs=218.9
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccC-C
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQN-N 86 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~-~ 86 (485)
..++|.+++++++|..+.. ....++|..|+|+...+.+|+.+++||+|||++|.|+.+.|++|.++++|..|-+-+ |
T Consensus 49 ~~VdCr~~GL~eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 5688999999999999954 788999999999988888999999999999999999999999999999988887766 8
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCC
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTP 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 166 (485)
+|+. .+...+..+.+|+.|.+.-|.+.-.....+..+++|..|.+.+|.+..+...+|..+..++.+.+..|.+.....
T Consensus 127 kI~~-l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 127 KITD-LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred chhh-hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 8875 555555569999999999998887778889999999999999999987777789999999999988877443311
Q ss_pred Ccc-------ccccccCCCCCCEEEccCCCCCCcCCccccccccccccEE---Ecccc-cCCcCcchhhhcCCCCCEEEc
Q 038605 167 ELS-------FLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIF---LMYNC-NISGGISEEISNLTNLTTINL 235 (485)
Q Consensus 167 ~~~-------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~-~~~~~~~~~l~~~~~L~~L~l 235 (485)
-.+ .+..++..+-..-..+.+..+..... ..+. ..++.+ ....+ .........+..+++|++|++
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a-~kf~---c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnl 281 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA-RKFL---CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNL 281 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccch-hhhh---hhHHhHHHhhccccCcCCcChHHHHhhcccceEecc
Confidence 100 01111122111111222221111100 0110 011111 11112 122223345778888888888
Q ss_pred CCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCC
Q 038605 236 GGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELT 313 (485)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 313 (485)
++|.++.+.+.+|....++++|.+..|++.......|.++..|+.|++.+|+|+...+..|....+|.+|++-.|++-
T Consensus 282 snN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 282 SNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 888888777888888888888888888887666677888888888888888888778888888888888888766543
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.4e-23 Score=222.86 Aligned_cols=338 Identities=22% Similarity=0.240 Sum_probs=196.5
Q ss_pred hhccCCCCCcEEEccCCcc------cccCCcCCCCCC-CCCEEeccCccceecCCccccCCCCCCEEEccCCccccccch
Q 038605 22 REFGNLADLEQMSLWENNL------RGEIPLEIGNLQ-NLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSS 94 (485)
Q Consensus 22 ~~l~~~~~L~~L~l~~~~~------~~~~~~~~~~l~-~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 94 (485)
.+|..|++|+.|.+..+.. ...+|..|..+| +|+.|.+.++.+. .+|..| ...+|+.|++.++.+......
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccccc
Confidence 3477888888888865532 224566666654 5888888887776 445555 467888888888877654333
Q ss_pred hhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccc
Q 038605 95 IADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSL 174 (485)
Q Consensus 95 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 174 (485)
. ..+++|+.|+++++.....+|. +..+++|++|++++|......|..+..+++|+.|++++|..... .+..+
T Consensus 630 ~--~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~-----Lp~~i 701 (1153)
T PLN03210 630 V--HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI-----LPTGI 701 (1153)
T ss_pred c--ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc-----cCCcC
Confidence 2 2478888888887654435553 66778888888888765556777778888888888887643222 12222
Q ss_pred cCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCC-------Ccccc
Q 038605 175 SNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNG-------SIPIA 247 (485)
Q Consensus 175 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~ 247 (485)
++++|+.|++++|......+ ..+.+++.|++.++.+.. +|..+ .+++|++|.+.++.... ..+..
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p-----~~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFP-----DISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccc-----cccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhh
Confidence 56778888887775432222 223566677776666542 33322 35566666665533210 01111
Q ss_pred ccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCc-CCCCCccccCCCCCc
Q 038605 248 LGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNE-LTSIPLTFWNLKDIL 326 (485)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~ 326 (485)
....++|+.|++++|.....+|..+.++++|+.|++++|...+..+... .+++|+.|++++|. +..+|.. ..+|+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~ 849 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNIS 849 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccC
Confidence 1223456666666665554556566666666666666654333333332 45566666666653 3334322 24566
Q ss_pred EEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 327 QLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 327 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
+|++++|.+. ..+..+..+++|+.|++++|.-...++..+..+++|+.+++++|.
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 6666666555 334455556666666666654333344445555666666666654
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=4.2e-23 Score=222.19 Aligned_cols=340 Identities=21% Similarity=0.201 Sum_probs=236.8
Q ss_pred CCcCCCCCCCCCEEeccCcc------ceecCCccccCCC-CCCEEEccCCccccccchhhhhcCCCccEEEccCcccccc
Q 038605 44 IPLEIGNLQNLEELDLRQNK------LVGIVPAAIFNVS-TLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGT 116 (485)
Q Consensus 44 ~~~~~~~l~~L~~L~L~~~~------i~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 116 (485)
.+.+|.++++|+.|.+..+. +....|..|..++ +|+.|++.++.+...+... .+.+|+.|++.++.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccc-c
Confidence 45568899999999996553 2334566677665 5999999998876544333 3789999999999887 6
Q ss_pred cchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCc
Q 038605 117 IPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRK 196 (485)
Q Consensus 117 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 196 (485)
++..+..+++|+.++++++......| .+..+++|+.|++++|..... .+..+..+++|+.|++++|......+.
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~-----lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVE-----LPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccc-----cchhhhccCCCCEEeCCCCCCcCccCC
Confidence 77778889999999998875444555 377889999999998865433 456688889999999998765444332
Q ss_pred cccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCC-------CCC
Q 038605 197 TSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEG-------SIP 269 (485)
Q Consensus 197 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~ 269 (485)
.. ..++|+.|.+.+|......+.. ..+|++|+++++.+. .+|..+ .+++|++|.+.++.... ..+
T Consensus 700 ~i---~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 700 GI---NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred cC---CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccch
Confidence 11 2367888888888655444432 357888888888875 445443 46777777777643221 111
Q ss_pred cccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCC-cCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCC
Q 038605 270 DDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSN-ELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKV 348 (485)
Q Consensus 270 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 348 (485)
......++|+.|++++|......+..+..+++|+.|++++| .+..+|... .+++|+.|++++|......+. ...+
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~n 847 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTN 847 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccc
Confidence 12233467888888888766667777778888888888876 455577654 677888888888765433332 2356
Q ss_pred CCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCc
Q 038605 349 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNN 406 (485)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 406 (485)
|++|++++|.+. .+|..+..+++|+.|++++|+-...++..+..+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 778888888776 456677778888888888875444566666777788888888775
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=7.9e-23 Score=180.87 Aligned_cols=277 Identities=23% Similarity=0.210 Sum_probs=209.8
Q ss_pred ccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccC-ccCCCCCCcccCCCCCC
Q 038605 200 GNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLED-NKLEGSIPDDICRLDEL 278 (485)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L 278 (485)
..+|+....+++..|++....+..|+.+++|++|+++.|.|..+.|..|+.++.+..|-+-+ |+|++.....|.++.++
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 45667778888888888888888888888888888888888878888888888877766655 88887766778888888
Q ss_pred CEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEccCCcCCC------------CCCccccC
Q 038605 279 YELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTG------------PLPLEIGN 345 (485)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~------------~~~~~~~~ 345 (485)
+.|.+.-|.+.....+.|..++++..|.+.+|.+..++. .+..+..++.+.+..|++.. ..+..+++
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 888888888877777788888888888888888888776 66777777887777665211 00011111
Q ss_pred C-------------------------CCCCeEEccCCcccccCc-ccccCCCCCCEEECCCCcccccCCccccCCCCCCE
Q 038605 346 L-------------------------KVLIGIDFSMNNFSGVIP-TEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKF 399 (485)
Q Consensus 346 ~-------------------------~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 399 (485)
. ..+..=-.+.+......| .+|..+++|++|++++|.+++.-+.+|.+...++.
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 1 111111122232332333 56899999999999999999888899999999999
Q ss_pred EeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCC---CCCCccccCCccccCCc
Q 038605 400 LNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGS---PNLQYYINDSSHFVDPK 475 (485)
Q Consensus 400 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~---p~~~~~~~~~~~~~~~~ 475 (485)
|.|..|++.......|.++..|+.|++.+|+|+..-|.. ....+|..+.+-+|||.|+| +...|+- +....+++.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr-~~~~~~~~~ 381 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR-KKSVVGNPR 381 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh-hCCCCCCCC
Confidence 999999998777788999999999999999999887765 88899999999999999999 4444443 333445544
Q ss_pred cc
Q 038605 476 IS 477 (485)
Q Consensus 476 ~~ 477 (485)
.-
T Consensus 382 Cq 383 (498)
T KOG4237|consen 382 CQ 383 (498)
T ss_pred CC
Confidence 43
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=1.2e-18 Score=174.74 Aligned_cols=178 Identities=31% Similarity=0.361 Sum_probs=85.6
Q ss_pred CCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCC
Q 038605 229 NLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLG 308 (485)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (485)
+|+.|++++|.+. .+|. ..++|++|++++|.+++ +|.. ..+|+.|++++|.+.. ++. ...+|+.|+++
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS 350 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVS 350 (788)
T ss_pred hcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc---cccccceEecC
Confidence 4445555555544 2222 12445555555555542 2211 1234555555555442 111 11345555555
Q ss_pred CCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCC
Q 038605 309 SNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIP 388 (485)
Q Consensus 309 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 388 (485)
+|+++.+|.. .++|+.|++++|.+.. .+. ...+|+.|++++|.+.. +|.. .++|+.|++++|++. .+|
T Consensus 351 ~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP 418 (788)
T PRK15387 351 DNQLASLPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLP 418 (788)
T ss_pred CCccCCCCCC---Ccccceehhhcccccc-Ccc---cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCC
Confidence 5555555532 2345555555555543 221 12345555666555553 2221 235566666666655 233
Q ss_pred ccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccccc
Q 038605 389 DSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 389 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 434 (485)
.. +.+|+.|++++|++. .+|..+..+++|+.|++++|++++.
T Consensus 419 ~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 419 ML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 22 234555666666665 4555555666666666666666544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=2.1e-18 Score=173.06 Aligned_cols=262 Identities=26% Similarity=0.361 Sum_probs=131.7
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEc
Q 038605 29 DLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSL 108 (485)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l 108 (485)
.-..|+++++.++ .+|..+. ++|+.|++++|.++. +|. ..++|++|++++|.++... . ..++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP-~----lp~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLP-V----LPPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCccc-C----cccccceeec
Confidence 3456777777776 4555443 367777777777664 332 2466777777777666432 1 1456667777
Q ss_pred cCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCC
Q 038605 109 WGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNN 188 (485)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 188 (485)
++|.+. .+|.. ..+|+.|++++|+++.. |. .+++|+.|++++|.+...+. . ..+|+.|++++|
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp~---l------p~~L~~L~Ls~N 332 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---L------PSELCKLWAYNN 332 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCCC---C------cccccccccccC
Confidence 766665 33332 24566666666666532 22 23556666666666654321 0 123445555555
Q ss_pred CCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCC
Q 038605 189 PLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSI 268 (485)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (485)
.+.. +..++. +|+.|++++|.+.+ +|.. ..+|+.|++++|.+.. +
T Consensus 333 ~L~~------LP~lp~------------------------~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L 377 (788)
T PRK15387 333 QLTS------LPTLPS------------------------GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L 377 (788)
T ss_pred cccc------cccccc------------------------ccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence 4431 111222 44455555554442 2211 2344445555555442 2
Q ss_pred CcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCC
Q 038605 269 PDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKV 348 (485)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 348 (485)
|.. ..+|+.|++++|.+.. .+. ..++|+.|++++|.++.+|.. ..+|+.|++++|+++ ..+..+..++.
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~-LP~---l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~ 446 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTS-LPV---LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSS 446 (788)
T ss_pred ccc---ccccceEEecCCcccC-CCC---cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccC
Confidence 221 1345555555555442 111 123455555555555555532 234555555555555 33444555555
Q ss_pred CCeEEccCCcccccCcc
Q 038605 349 LIGIDFSMNNFSGVIPT 365 (485)
Q Consensus 349 L~~L~l~~~~~~~~~~~ 365 (485)
|+.|++++|.+++..+.
T Consensus 447 L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCeEECCCCCCCchHHH
Confidence 55555555555544433
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=5.1e-20 Score=173.09 Aligned_cols=232 Identities=25% Similarity=0.244 Sum_probs=145.5
Q ss_pred hhhcCCCCCEEEcCCCcCCC------CccccccCCCCCCeEeccCccCCCCCCcccCCCC---CCCEEEccCCcCccc--
Q 038605 223 EISNLTNLTTINLGGNKLNG------SIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLD---ELYELELGGNKLSGS-- 291 (485)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~~~------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~-- 291 (485)
.+...+++++++++++.+.+ ..+..+..+++|++|++++|.+....+..+..+. +|++|++++|.+.+.
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 34455566666666665541 1123444566777777777766544444343333 377777777766532
Q ss_pred --ccccccCC-CCCcEEeCCCCcCCC-----CCccccCCCCCcEEEccCCcCCCCC----CccccCCCCCCeEEccCCcc
Q 038605 292 --IPACFGNL-IALRILSLGSNELTS-----IPLTFWNLKDILQLNISSNYFTGPL----PLEIGNLKVLIGIDFSMNNF 359 (485)
Q Consensus 292 --~~~~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~ 359 (485)
....+..+ ++|+.|++++|.++. ++..+..+++|+.|++++|.+.+.. ...+...+.|++|++++|.+
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 12234445 677788887777763 3334555667888888887776422 12234556888888888877
Q ss_pred ccc----CcccccCCCCCCEEECCCCcccccCCcccc-----CCCCCCEEeCCCCcccc----cCcccccCCCCCCceeC
Q 038605 360 SGV----IPTEIGGLKNLEYLFLGYNRLRGSIPDSFG-----DLISLKFLNLSNNNLFG----AIPASLEKLSYLEDLNL 426 (485)
Q Consensus 360 ~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l 426 (485)
.+. +...+..+++|++|++++|++.+.....+. ..+.|++|++++|.+++ .+...+..+++|+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 533 233456678899999998887753222222 23789999999998862 23345566788999999
Q ss_pred CCCccccc----CC-CCCCC-CCCCcccccCCCC
Q 038605 427 SFNKLEGE----IP-RGGSF-GNFSAESFEGNEL 454 (485)
Q Consensus 427 ~~n~~~~~----~p-~~~~~-~~L~~l~l~~np~ 454 (485)
++|++... +. ....+ +.|+.+++.+|||
T Consensus 286 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 286 RGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 99998732 22 22555 7888899998885
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=4.6e-17 Score=164.55 Aligned_cols=139 Identities=24% Similarity=0.352 Sum_probs=57.8
Q ss_pred CCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCC
Q 038605 301 ALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 380 (485)
Q Consensus 301 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 380 (485)
+|+.|++++|.++.+|..+. ++|+.|++++|.+... +..+ .++|+.|++++|.++. +|..+. ++|+.|++++
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~ 355 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSK 355 (754)
T ss_pred CCcEEECCCCccccCcccch--hhHHHHHhcCCccccC-Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCC
Confidence 44444444444444443221 2344444444444421 1111 1344444455544442 222221 3455555555
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-----CCCCCCCcccccCCCC
Q 038605 381 NRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-----GSFGNFSAESFEGNEL 454 (485)
Q Consensus 381 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-----~~~~~L~~l~l~~np~ 454 (485)
|+++ .+|..+ .++|+.|++++|.+. .+|..+. ..|+.|++++|++. .+|.. ...+.+..+++.+||+
T Consensus 356 N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 356 NQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence 5544 233322 234555555555544 2333322 23455555555544 33321 2234444555555553
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=4.4e-19 Score=166.72 Aligned_cols=282 Identities=22% Similarity=0.233 Sum_probs=182.7
Q ss_pred EEEccCcccc-cccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCcccccccccccc
Q 038605 129 ILELVGNSFS-GFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLE 207 (485)
Q Consensus 129 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 207 (485)
.|++..+.++ ......+..+.+|+.++++++.+...... .....+...++++.+++.++.+... . ..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~-~i~~~l~~~~~l~~l~l~~~~~~~~-~-~~~-------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK-ALASALRPQPSLKELCLSLNETGRI-P-RGL-------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHH-HHHHHHhhCCCceEEeccccccCCc-c-hHH--------
Confidence 3555555554 23334456667788888888876542111 1333455667777777776654310 0 000
Q ss_pred EEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCC---CCCeEeccCccCCCC----CCcccCCC-CCCC
Q 038605 208 IFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQ---KLQYLGLEDNKLEGS----IPDDICRL-DELY 279 (485)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~----~~~~l~~~-~~L~ 279 (485)
...+..+..+++|++|++++|.+....+..+..+. +|++|++++|.+.+. ....+..+ ++|+
T Consensus 71 ----------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 71 ----------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ----------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 12234556677888888888887644444444443 488888888877632 22344555 7888
Q ss_pred EEEccCCcCccc----ccccccCCCCCcEEeCCCCcCCC-----CCccccCCCCCcEEEccCCcCCCCCC----ccccCC
Q 038605 280 ELELGGNKLSGS----IPACFGNLIALRILSLGSNELTS-----IPLTFWNLKDILQLNISSNYFTGPLP----LEIGNL 346 (485)
Q Consensus 280 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~ 346 (485)
.|++++|.+... ....+..+++|++|++++|.++. ++..+..+++|++|++++|.+.+... ..+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 888888887632 23345667789999998888874 33344456789999999988764322 335567
Q ss_pred CCCCeEEccCCcccccCccccc-----CCCCCCEEECCCCcccc----cCCccccCCCCCCEEeCCCCccccc----Ccc
Q 038605 347 KVLIGIDFSMNNFSGVIPTEIG-----GLKNLEYLFLGYNRLRG----SIPDSFGDLISLKFLNLSNNNLFGA----IPA 413 (485)
Q Consensus 347 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~ 413 (485)
++|++|++++|.+.+.....+. ..+.|++|++++|.+++ .+...+..+++|+++++++|.+.+. ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 8899999999987753222221 24789999999998862 2234455668999999999998754 444
Q ss_pred cccCC-CCCCceeCCCCcc
Q 038605 414 SLEKL-SYLEDLNLSFNKL 431 (485)
Q Consensus 414 ~l~~l-~~L~~L~l~~n~~ 431 (485)
.+... +.|+++++.+|++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 44455 7899999988864
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=3.2e-16 Score=158.52 Aligned_cols=247 Identities=23% Similarity=0.370 Sum_probs=121.0
Q ss_pred CCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccc
Q 038605 125 SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSH 204 (485)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 204 (485)
.+...|+++++.++. +|..+ .++|+.|++++|.+...+.. + ..+|+.|++++|.+.. .+ ..++.
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~LtsLP~~------l--~~nL~~L~Ls~N~Lts-LP----~~l~~ 241 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKSLPEN------L--QGNIKTLYANSNQLTS-IP----ATLPD 241 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCcCChh------h--ccCCCEEECCCCcccc-CC----hhhhc
Confidence 456677777776663 33333 24677777777777654321 1 2467777777776542 11 12234
Q ss_pred cccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEcc
Q 038605 205 SLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELG 284 (485)
Q Consensus 205 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 284 (485)
.|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence 5666666666555 2333332 35666666666555 2333221 356666666665552 232221 345555555
Q ss_pred CCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCc
Q 038605 285 GNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIP 364 (485)
Q Consensus 285 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 364 (485)
+|.+.. .+..+ .++|+.|++++|.++.+|..+ .++|+.|++++|++.. .+..+ .+.|++|++++|.+.. +|
T Consensus 313 ~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~-LP 383 (754)
T PRK15370 313 SNSLTA-LPETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN-LP 383 (754)
T ss_pred CCcccc-CCccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC-CC
Confidence 555542 22211 245555555555555555433 1455555555555542 22222 1345555555555542 22
Q ss_pred ccccCCCCCCEEECCCCcccccCCccc----cCCCCCCEEeCCCCccc
Q 038605 365 TEIGGLKNLEYLFLGYNRLRGSIPDSF----GDLISLKFLNLSNNNLF 408 (485)
Q Consensus 365 ~~~~~l~~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~l~~~~~~ 408 (485)
..+. ..|+.|++++|++. .+|..+ ...+.+..|++.+|++.
T Consensus 384 ~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 2222 23555555555554 333222 22344555555555544
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.1e-18 Score=137.24 Aligned_cols=177 Identities=27% Similarity=0.459 Sum_probs=113.9
Q ss_pred CCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEcc
Q 038605 276 DELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFS 355 (485)
Q Consensus 276 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 355 (485)
..++.|.+++|+++ ..+..+..+.+|+.|++.+|++.++|..+..+++|+.|++.-|++. ..+..|+.++.|+.|++.
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 33444444444444 2333444444555555555555555555555555555555544444 344445555555555555
Q ss_pred CCcccc-cCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccccc
Q 038605 356 MNNFSG-VIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 356 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 434 (485)
.|.+.. .+|..|-.++.|+-|+++.|.+. .+|..++++.+|+.|.+++|.+. .+|..++.+..|++|.+.||+++-.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeec
Confidence 554432 34555666778888888888887 77888888999999999999887 7888888899999999999998743
Q ss_pred CCCC---CCCCCCCcccccCCCCcc
Q 038605 435 IPRG---GSFGNFSAESFEGNELLC 456 (485)
Q Consensus 435 ~p~~---~~~~~L~~l~l~~np~~c 456 (485)
-|.. ....+-+.+.+..|||+-
T Consensus 189 ppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 189 PPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred ChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 3433 455566678889999886
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.7e-16 Score=125.02 Aligned_cols=152 Identities=32% Similarity=0.526 Sum_probs=74.0
Q ss_pred CCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccC
Q 038605 253 KLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISS 332 (485)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~ 332 (485)
.++.|.+++|+++ ..|..+..+.+|+.|++++|++. ..+..++.++.|+.|++.-|++..+|..|+.+|.|+.|++..
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 3344444444444 22333444444444444444443 233344444444444444444444444555555555555544
Q ss_pred CcCCC-CCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCccc
Q 038605 333 NYFTG-PLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 333 ~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
|++.. ..+..|..+..|+.|.++.|.+. .+|..++++++|+-|.+..|.+. .+|..++.+..|+.|.+.+|++.
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 44432 23344444455555555555544 33444555555555555555554 45555555555555555555555
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=6.4e-14 Score=123.15 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=21.4
Q ss_pred hhcCCCCCEEEcCCCcCCCCcc----ccccCCCCCCeEeccCccCC
Q 038605 224 ISNLTNLTTINLGGNKLNGSIP----IALGKLQKLQYLGLEDNKLE 265 (485)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~ 265 (485)
+..+++|++|++|+|-+....+ ..+..+..|++|.+.+|.+.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 4445556666666655542222 22334555666666666554
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=2e-12 Score=111.43 Aligned_cols=124 Identities=26% Similarity=0.290 Sum_probs=61.9
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCC
Q 038605 324 DILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLS 403 (485)
Q Consensus 324 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 403 (485)
.|+++++++|.++ .+.++..-.|.++.|+++.|.+... +.++.+++|+.||+++|.+. ....+-..+.+++.|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 3444455554444 2223333344555555555554422 12455555555666555554 333333445555666666
Q ss_pred CCcccccCcccccCCCCCCceeCCCCcccc--cCCCCCCCCCCCcccccCCC
Q 038605 404 NNNLFGAIPASLEKLSYLEDLNLSFNKLEG--EIPRGGSFGNFSAESFEGNE 453 (485)
Q Consensus 404 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~~L~~l~l~~np 453 (485)
+|.+.+. .+++.+-+|..||+++|+|.+ ....++.+|.|+.+.+.+||
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 6655422 345555556666666666542 23334556666666666666
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.4e-12 Score=118.05 Aligned_cols=211 Identities=21% Similarity=0.206 Sum_probs=124.1
Q ss_pred cCCCCcEEEccCcccccccc-hhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCcccccc
Q 038605 123 NASKLSILELVGNSFSGFIP-NTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGN 201 (485)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 201 (485)
++.+|+.+.+.++.+..... .....+++++.|++++|-+..+.+ .......+++|+.|+++.|.+...... ....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFISS-NTTL 194 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH---HHHHHHhcccchhcccccccccCCccc-cchh
Confidence 34555555555554442211 234455666666666665554422 222334556666666666655433221 1112
Q ss_pred ccccccEEEcccccCCcCc-chhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCC-CcccCCCCCCC
Q 038605 202 LSHSLEIFLMYNCNISGGI-SEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSI-PDDICRLDELY 279 (485)
Q Consensus 202 ~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~ 279 (485)
..++++.|.++.|++.... ...+..+|+|+.|++++|............++.|++|+|++|.+.... ......+|.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 3367777788877766432 223456788888888888532233334455677888888888776432 13456778888
Q ss_pred EEEccCCcCccccccc------ccCCCCCcEEeCCCCcCCCCCc--cccCCCCCcEEEccCCcCCC
Q 038605 280 ELELGGNKLSGSIPAC------FGNLIALRILSLGSNELTSIPL--TFWNLKDILQLNISSNYFTG 337 (485)
Q Consensus 280 ~L~l~~~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~ 337 (485)
.|+++.+.+....... ...+++|+.|++..|++.+++. .+..+++|+.+.+..+.+..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 8888888776432111 2456788888888888877654 34556777777777777654
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-12 Score=115.51 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=56.7
Q ss_pred CCCcEEEccCCcCCCCCC----ccccCCCCCCeEEccCCccccc----CcccccCCCCCCEEECCCCcccc----cCCcc
Q 038605 323 KDILQLNISSNYFTGPLP----LEIGNLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLRG----SIPDS 390 (485)
Q Consensus 323 ~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~----~~~~~ 390 (485)
+.|+.+...+|++..... ..+...+.|+.+.+..|.|... ....+..+++|+.||+..|.++. .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 445555555554432211 1233444555555555544322 11234455555555555554442 12223
Q ss_pred ccCCCCCCEEeCCCCcccccCcccc-----cCCCCCCceeCCCCcccccCC-----CCCCCCCCCcccccCCC
Q 038605 391 FGDLISLKFLNLSNNNLFGAIPASL-----EKLSYLEDLNLSFNKLEGEIP-----RGGSFGNFSAESFEGNE 453 (485)
Q Consensus 391 ~~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~p-----~~~~~~~L~~l~l~~np 453 (485)
+..+++|+.|++++|.+.......+ ...|+|+.|.+.+|.|+..-- .....|.|.+|.+++|.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 3444455555555555433222211 124555555555555541100 01225555555555554
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.6e-12 Score=117.70 Aligned_cols=222 Identities=21% Similarity=0.241 Sum_probs=131.6
Q ss_pred CCChhccCCCCCcEEEccCCcccccCC--cCCCCCCCCCEEeccCccceecCC--ccccCCCCCCEEEccCCccccccch
Q 038605 19 EIPREFGNLADLEQMSLWENNLRGEIP--LEIGNLQNLEELDLRQNKLVGIVP--AAIFNVSTLKLLQLQNNSLLGCLSS 94 (485)
Q Consensus 19 ~lp~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~i~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~ 94 (485)
++.+--+++++||...|+++.+. ..+ .....|++++.|+|+.|-++.+.+ .....+|+|+.|+++.|++......
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s 190 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS 190 (505)
T ss_pred HHHHHhhhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence 44444567778888888887765 333 356678888888888876654422 2334678888888888877655555
Q ss_pred hhhhcCCCccEEEccCcccccc-cchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCcccccc
Q 038605 95 IADVRLPNLEELSLWGNNFNGT-IPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSS 173 (485)
Q Consensus 95 ~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 173 (485)
.....+++|+.|.++.|.++.. +...+..+|+|+.|.+..|............+..|+.|++++|.+...+. ...
T Consensus 191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~----~~~ 266 (505)
T KOG3207|consen 191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ----GYK 266 (505)
T ss_pred cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc----ccc
Confidence 5555577888888888877632 33344457788888887774322333334556777888888877766542 234
Q ss_pred ccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCC-ccccccCCC
Q 038605 174 LSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGS-IPIALGKLQ 252 (485)
Q Consensus 174 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~ 252 (485)
...++.|..|.++.+.+........ + ...-...+++|+.|++..|.+... ....+..++
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~--------~------------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDV--------E------------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE 326 (505)
T ss_pred cccccchhhhhccccCcchhcCCCc--------c------------chhhhcccccceeeecccCccccccccchhhccc
Confidence 5566777777776666543221000 0 000023356667777776666411 111233445
Q ss_pred CCCeEeccCccCC
Q 038605 253 KLQYLGLEDNKLE 265 (485)
Q Consensus 253 ~L~~L~l~~~~~~ 265 (485)
+|+.|.+..+.++
T Consensus 327 nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 327 NLKHLRITLNYLN 339 (505)
T ss_pred hhhhhhccccccc
Confidence 6666666665554
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=1.8e-11 Score=126.36 Aligned_cols=153 Identities=26% Similarity=0.298 Sum_probs=101.2
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCcc--ceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCc
Q 038605 26 NLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNK--LVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNL 103 (485)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~--i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 103 (485)
.....|...+-++.+. ..+.. ..++.|++|-+.+|. +.....+.|..++.|++|||++|.-....|..... +.+|
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHL 597 (889)
T ss_pred chhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhh
Confidence 3456677777777665 34433 234578888888875 44444455777888888888887655556666654 8888
Q ss_pred cEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEE
Q 038605 104 EELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLI 183 (485)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L 183 (485)
|+|+++++.+. .+|..+.+++.|.+|++..+......+.....+++|++|.+.......... ....+..+++|+.+
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~---~l~el~~Le~L~~l 673 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL---LLKELENLEHLENL 673 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh---hHHhhhcccchhhh
Confidence 88888888887 788888888888888888775544445656668888888887654222111 23344455555555
Q ss_pred Ec
Q 038605 184 AL 185 (485)
Q Consensus 184 ~l 185 (485)
..
T Consensus 674 s~ 675 (889)
T KOG4658|consen 674 SI 675 (889)
T ss_pred ee
Confidence 44
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=4.1e-12 Score=109.59 Aligned_cols=208 Identities=21% Similarity=0.152 Sum_probs=137.9
Q ss_pred chhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCc-CcccccccccCC
Q 038605 221 SEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNK-LSGSIPACFGNL 299 (485)
Q Consensus 221 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 299 (485)
+..+.-+.+|..+.++.|.-.. +......-+.|+.+.+.+..+... + .+.....+....-+.-. ..+.........
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 4445556778888888776442 222223346777887777654421 1 12111222211111111 111122233445
Q ss_pred CCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECC
Q 038605 300 IALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLG 379 (485)
Q Consensus 300 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 379 (485)
..|+++++++|.|+.+..+..-.|.++.|+++.|.+... ..+..+++|+.|++++|.++. ...+-..+-++++|.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 678899999999999888877889999999999988743 347788899999999998874 33445567788999999
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCccccc-CcccccCCCCCCceeCCCCcccccCCC
Q 038605 380 YNRLRGSIPDSFGDLISLKFLNLSNNNLFGA-IPASLEKLSYLEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 380 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~ 437 (485)
+|.+.+ ...+..+-+|..||+++|+|... ....++.+|+|++|.+.+|++. .+|+
T Consensus 361 ~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 361 QNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred hhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence 998853 24577788899999999988643 2356788999999999999986 3443
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=4.3e-11 Score=121.04 Aligned_cols=114 Identities=38% Similarity=0.635 Sum_probs=104.1
Q ss_pred CCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCC
Q 038605 348 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLS 427 (485)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 427 (485)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCC--CCCCCCCcccccCCCCccCCCCC
Q 038605 428 FNKLEGEIPRG--GSFGNFSAESFEGNELLCGSPNL 461 (485)
Q Consensus 428 ~n~~~~~~p~~--~~~~~L~~l~l~~np~~c~~p~~ 461 (485)
+|++.+.+|.. ..+.++..+++.+|+.+|++|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCC
Confidence 99999999975 34456778999999999998754
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=3.9e-11 Score=116.03 Aligned_cols=174 Identities=37% Similarity=0.557 Sum_probs=75.3
Q ss_pred CCCCEEEcCCCcCCCCccccccCCC-CCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEe
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQ-KLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILS 306 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (485)
+.++.+++.++.+. .++....... +|+.|+++++.+. ..+..+..+++|+.|++++|++.. .+......++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 44555555555554 2222233332 4555555555554 222334455555555555555442 222222444555555
Q ss_pred CCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccccc
Q 038605 307 LGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGS 386 (485)
Q Consensus 307 l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 386 (485)
+++|.+..+|........|+++.+++|... ..+..+..+..+..+.+.+|++.. .+..+..++.+++|++++|.+...
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc
Confidence 555555555543333333555555554322 122233334444444444444432 123334444445555554444422
Q ss_pred CCccccCCCCCCEEeCCCCccc
Q 038605 387 IPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 387 ~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
. . +....+++.|+++++.+.
T Consensus 271 ~-~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 271 S-S-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred c-c-ccccCccCEEeccCcccc
Confidence 1 1 444444455555444444
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=5.1e-11 Score=98.47 Aligned_cols=106 Identities=26% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCC
Q 038605 301 ALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 380 (485)
Q Consensus 301 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 380 (485)
++++|++.++.|+.+...-..+.+|+.|++++|.+... ..+..++.|++|++++|.++.........+++|++|++++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 34444444444444332111234444444444444422 1233444444444444444432111112344455555554
Q ss_pred Cccccc-CCccccCCCCCCEEeCCCCccc
Q 038605 381 NRLRGS-IPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 381 ~~l~~~-~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
|++.+. ....+..+++|+.|++.+|++.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 444321 1123334445555555555444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=9.1e-11 Score=97.01 Aligned_cols=128 Identities=30% Similarity=0.378 Sum_probs=42.9
Q ss_pred cCCCCCcEEEccCCcccccCCcCCC-CCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCc
Q 038605 25 GNLADLEQMSLWENNLRGEIPLEIG-NLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNL 103 (485)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 103 (485)
.+..++++|+|+++.|+ .+. .+. .+.+|+.|++++|.++.. +.+..++.|++|++++|.++..... ....+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~-l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEG-LDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHH-HHHH-TT-
T ss_pred ccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccc-hHHhCCcC
Confidence 34556788888888887 333 344 577888888888888754 3577788888888888888754332 22247888
Q ss_pred cEEEccCcccccc-cchhhhcCCCCcEEEccCccccccc---chhccCCCCCcEEEcc
Q 038605 104 EELSLWGNNFNGT-IPRFIFNASKLSILELVGNSFSGFI---PNTFGNLRNLERLNLQ 157 (485)
Q Consensus 104 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~ 157 (485)
+.|.+++|.+... .-..+..+++|++|++.+|.+.... ...+..+|+|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8888888877532 2244556777777777777665321 1124456666666543
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=2.2e-12 Score=120.60 Aligned_cols=194 Identities=29% Similarity=0.462 Sum_probs=148.8
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (485)
..-+..+++.|.+. ++|..+..+..|..+.+..|.+. .+|..++++..|++++++.|++. ..+..+..+ -|+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence 34455678888876 67777777888888888888877 67778888888888888888877 444444443 4788888
Q ss_pred CCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccC
Q 038605 308 GSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSI 387 (485)
Q Consensus 308 ~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 387 (485)
++|+++.+|..++..+.|..|+.+.|.+. ..+..+..+..|+.|++..|.+.. +|..+..+ .|..||++.|++. .+
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-ec
Confidence 89999988888888888888888888887 455567778888888888888774 55556654 4888999999888 77
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccc---cCCCCCCceeCCCCc
Q 038605 388 PDSFGDLISLKFLNLSNNNLFGAIPASL---EKLSYLEDLNLSFNK 430 (485)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n~ 430 (485)
|-+|..+.+|++|-|.+|++. .-|..+ +...-.++|+..-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888999999999999999886 444433 345567888888884
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=8.3e-11 Score=121.56 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=105.6
Q ss_pred cccccccccCCChhccCCCCCcEEEccCCc--ccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 10 DNFLTFQLGEIPREFGNLADLEQMSLWENN--LRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 10 ~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
...+++.+..++.... .+.|+.|-+.++. +.......|..+|.|++|||++|.--..+|+.++.+-+||+|+++++.
T Consensus 528 ~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~ 606 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG 606 (889)
T ss_pred EEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence 4445566666666653 4479999999986 554445558889999999999886555789999999999999999999
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcc--cccccchhccCCCCCcEEEccC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNS--FSGFIPNTFGNLRNLERLNLQD 158 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~ 158 (485)
+...+.... ++..|.+|++..+......+.....+.+|++|.+.... .+......+..+.+|+.+....
T Consensus 607 I~~LP~~l~--~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 607 ISHLPSGLG--NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccchHHH--HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 875444433 48999999999887655567777779999999997654 2222333345566666665543
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=3.9e-10 Score=109.05 Aligned_cols=174 Identities=36% Similarity=0.510 Sum_probs=76.3
Q ss_pred CCCCeEeccCccCCCCCCcccCCCC-CCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEc
Q 038605 252 QKLQYLGLEDNKLEGSIPDDICRLD-ELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNI 330 (485)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 330 (485)
+.++.|.+.++.++. ++....... +|+.|++++|.+.. .+..+..+++|+.|++++|++.+++......+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 444555555555442 222233332 45555555554441 222344445555555555555555443334445555555
Q ss_pred cCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 038605 331 SSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGA 410 (485)
Q Consensus 331 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 410 (485)
++|++... +........|+++.+++|.+. ..+..+..++++..+.+.++++. ..+..+..++.++.|++++|.+...
T Consensus 194 s~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 194 SGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc
Confidence 55554422 111122333455555555322 12233444444444444444443 2233444444455555555555422
Q ss_pred CcccccCCCCCCceeCCCCccc
Q 038605 411 IPASLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 411 ~~~~l~~l~~L~~L~l~~n~~~ 432 (485)
.. +....++++|+++++.+.
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cc--ccccCccCEEeccCcccc
Confidence 22 444455555555554444
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=9.3e-12 Score=116.46 Aligned_cols=194 Identities=31% Similarity=0.457 Sum_probs=159.5
Q ss_pred CCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEE
Q 038605 250 KLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLN 329 (485)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 329 (485)
.+..-...+++.|++. .+|..++.+-.|+.+.+..|.+. .++..+..+..|+.++++.|+++.+|..+..++ |+.|.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 3445567789999988 67888888889999999999887 677788899999999999999999988766655 89999
Q ss_pred ccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 038605 330 ISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFG 409 (485)
Q Consensus 330 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 409 (485)
+++|+++ ..+..++..+.|..|+.+.|.+. .+|..+.++.+|+.|++..|.+. .+|+.++.+ .|..||+++|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-
Confidence 9999998 56667778899999999999988 46777899999999999999998 667777755 4889999999999
Q ss_pred cCcccccCCCCCCceeCCCCcccccCCCC----CCCCCCCcccccCC
Q 038605 410 AIPASLEKLSYLEDLNLSFNKLEGEIPRG----GSFGNFSAESFEGN 452 (485)
Q Consensus 410 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~----~~~~~L~~l~l~~n 452 (485)
.+|..|..|..|++|-+.+|++. +-|.. +...-.+.|++.-+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 78999999999999999999996 44432 44444444555433
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1.4e-09 Score=73.92 Aligned_cols=61 Identities=43% Similarity=0.594 Sum_probs=51.4
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcc
Q 038605 28 ADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSL 88 (485)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 88 (485)
++|++|++++|.++...+..|.++++|++|++++|.++...+++|.++++|++|++++|.+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688888998888866667888889999999998888888888888888888888888864
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.88 E-value=4.6e-09 Score=106.45 Aligned_cols=114 Identities=37% Similarity=0.537 Sum_probs=101.5
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCC
Q 038605 324 DILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLS 403 (485)
Q Consensus 324 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 403 (485)
.++.|+|++|.+.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999998888899999999999999999998899889999999999999999998999999999999999999
Q ss_pred CCcccccCcccccCC-CCCCceeCCCCcccccCCC
Q 038605 404 NNNLFGAIPASLEKL-SYLEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 404 ~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~ 437 (485)
+|.+.+.+|..+... .++..+++.+|......|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999999999888653 4677899999887655553
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=5.7e-10 Score=108.02 Aligned_cols=219 Identities=27% Similarity=0.335 Sum_probs=145.5
Q ss_pred hhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCc
Q 038605 224 ISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALR 303 (485)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (485)
+..+.+|+.+++.+|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.+... ..+..+++|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 56667888888888887633 22266778888888888888754 3356666788888888887643 3455578888
Q ss_pred EEeCCCCcCCCCCcc-ccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCC--CCEEECCC
Q 038605 304 ILSLGSNELTSIPLT-FWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKN--LEYLFLGY 380 (485)
Q Consensus 304 ~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~ 380 (485)
.+++++|.+..+... ...+.+++.+++.+|.+.... .+..+..+..+++..|.+...- .+..+.. |+.+++++
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~ 241 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSG 241 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceecc--CcccchhHHHHHHhccc
Confidence 888888888887653 456778888888888775332 2333444444566777665321 1222333 78888888
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccccc---CC--CCCCCCCCCcccccCCCC
Q 038605 381 NRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGE---IP--RGGSFGNFSAESFEGNEL 454 (485)
Q Consensus 381 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~---~p--~~~~~~~L~~l~l~~np~ 454 (485)
+++. ..+..+..+..++.|+++++++... ..+...+.+..+...++++... .. .....+.++...+.+||.
T Consensus 242 n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 242 NRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred Cccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 8886 3335567778888888888877633 3455566677777777776522 11 136677777788888773
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3e-09 Score=72.22 Aligned_cols=59 Identities=46% Similarity=0.560 Sum_probs=31.4
Q ss_pred CCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCc
Q 038605 372 NLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNK 430 (485)
Q Consensus 372 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 430 (485)
+|++|++++|+++...+..|..+++|++|++++|.+....+..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554444455555555555555555554444555555555555555554
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.2e-10 Score=100.62 Aligned_cols=181 Identities=24% Similarity=0.209 Sum_probs=128.8
Q ss_pred CccEEEccCccccc-ccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCC
Q 038605 102 NLEELSLWGNNFNG-TIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSL 180 (485)
Q Consensus 102 ~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L 180 (485)
+|+++|++...++. .+...+..+.+|+.|.+.+..+.+.+...++.-.+|+.|+++++.-.+.. +...-+.+|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n---~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN---ALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh---HHHHHHHhhhhH
Confidence 58999999887753 34556678899999999999888877788888899999999887432211 122346789999
Q ss_pred CEEEccCCCCCCcCCccccccccccccEEEcccccCC---cCcchhhhcCCCCCEEEcCCCcCC-CCccccccCCCCCCe
Q 038605 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNIS---GGISEEISNLTNLTTINLGGNKLN-GSIPIALGKLQKLQY 256 (485)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~ 256 (485)
..|++++|....+.....+....+++..|+++++.-. ..+..-...+++|.+||++++... ......+..++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9999999987766655556666678888888877421 123334567888999999877543 233345667788888
Q ss_pred EeccCccCCCCCCc---ccCCCCCCCEEEccCCc
Q 038605 257 LGLEDNKLEGSIPD---DICRLDELYELELGGNK 287 (485)
Q Consensus 257 L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~ 287 (485)
|.++.|.. ..|. .+...|+|.+|++.++-
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88888863 2333 34566888888887763
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=8.8e-10 Score=106.73 Aligned_cols=217 Identities=29% Similarity=0.321 Sum_probs=155.0
Q ss_pred cCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEE
Q 038605 226 NLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
.+..++.+.+..+.+.. ....+..+.+++.|++.+|.+... ...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34556666677777653 233467788999999999998744 22267789999999999988754 345667779999
Q ss_pred eCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccc
Q 038605 306 SLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLP-LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR 384 (485)
Q Consensus 306 ~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 384 (485)
++++|.++.+.. +..+..|+.+++++|.+..... . ...+..++.+.+.+|.+... ..+..+..+..+++..|.+.
T Consensus 146 ~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 999999998774 3458889999999998875443 2 46788888899999988743 33444555666688888776
Q ss_pred ccCCccccCCCC--CCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCC
Q 038605 385 GSIPDSFGDLIS--LKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 454 (485)
Q Consensus 385 ~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~ 454 (485)
... .+..++. |+.+++++|++. ..+..+..+..+..+++.+|++. .+......+.+..+....|+.
T Consensus 222 ~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 222 KLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS-NLEGLERLPKLSELWLNDNKL 289 (414)
T ss_pred ecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc-ccccccccchHHHhccCcchh
Confidence 332 2333333 899999999987 34356778889999999999886 444445666666677776663
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.71 E-value=2.3e-10 Score=110.24 Aligned_cols=128 Identities=31% Similarity=0.409 Sum_probs=91.5
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCc-cccCCCCCCEEeC
Q 038605 324 DILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPD-SFGDLISLKFLNL 402 (485)
Q Consensus 324 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l 402 (485)
.|...+.+.|.+. ....++.-++.++.|+|++|++..+ +.+..|++|+.|||++|++. .+|. ...++. |+.|++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 3555556666655 3444566667777777888777654 35777888888999988887 3332 233444 899999
Q ss_pred CCCcccccCcccccCCCCCCceeCCCCcccc--cCCCCCCCCCCCcccccCCCCccCC
Q 038605 403 SNNNLFGAIPASLEKLSYLEDLNLSFNKLEG--EIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 403 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
++|.++.. .+++++.+|+.||+++|-+.+ .+.....+..|++|.+.|||..|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 99988733 467788899999999998874 3333477888999999999977765
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.6e-10 Score=97.68 Aligned_cols=85 Identities=19% Similarity=0.124 Sum_probs=44.8
Q ss_pred CCcEEEccCCcccc-cCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc-cccccchhhhhcCCCccEE
Q 038605 29 DLEQMSLWENNLRG-EIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS-LLGCLSSIADVRLPNLEEL 106 (485)
Q Consensus 29 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L 106 (485)
.|++|||++..|+. .+-..+.+|.+|+.|++.++++.+-....+++-.+|+.|+++++. ++.......+.+|..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35666666655552 122234455666666666665555444455555666666666543 3333334444445566666
Q ss_pred EccCccc
Q 038605 107 SLWGNNF 113 (485)
Q Consensus 107 ~l~~~~~ 113 (485)
++++|..
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 6665544
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=6.8e-09 Score=89.90 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=95.0
Q ss_pred ccccEEEcccccCCc-CcchhhhcCCCCCEEEcCCCcCCCC---ccccccCCCCCCeEeccCccCCC--CCCcccCCCCC
Q 038605 204 HSLEIFLMYNCNISG-GISEEISNLTNLTTINLGGNKLNGS---IPIALGKLQKLQYLGLEDNKLEG--SIPDDICRLDE 277 (485)
Q Consensus 204 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~ 277 (485)
.+++++.+.+..+.. .....+..+|.+++|+++.|.+... ....=...+.++.+....|.... .....-..+|+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 345555555544332 2234466788889999998855411 11111233466677776664321 11122235678
Q ss_pred CCEEEccCCcCcc-cccccccCCCCCcEEeCCCCcCCCCCc--cccCCCCCcEEEccCCcCCCCCCc------cccCCCC
Q 038605 278 LYELELGGNKLSG-SIPACFGNLIALRILSLGSNELTSIPL--TFWNLKDILQLNISSNYFTGPLPL------EIGNLKV 348 (485)
Q Consensus 278 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~------~~~~~~~ 348 (485)
+..+-+..|++.. .....+..+|.+..|+++.+++.++.. .+..+++|+.|.+.++++.+.... -+..+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 8888898887753 334457778888899999999998543 567889999999999988754322 2345666
Q ss_pred CCeEEcc
Q 038605 349 LIGIDFS 355 (485)
Q Consensus 349 L~~L~l~ 355 (485)
++.|+=+
T Consensus 281 v~vLNGs 287 (418)
T KOG2982|consen 281 VQVLNGS 287 (418)
T ss_pred eEEecCc
Confidence 7666544
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.59 E-value=1e-09 Score=99.33 Aligned_cols=280 Identities=18% Similarity=0.165 Sum_probs=156.8
Q ss_pred CCCcEEEccCCcccccCC-cC-CCCCCCCCEEeccCc-cceecCCccc-cCCCCCCEEEccCCc-cccccchhhhhcCCC
Q 038605 28 ADLEQMSLWENNLRGEIP-LE-IGNLQNLEELDLRQN-KLVGIVPAAI-FNVSTLKLLQLQNNS-LLGCLSSIADVRLPN 102 (485)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~-~~-~~~l~~L~~L~L~~~-~i~~~~~~~l-~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~ 102 (485)
..|+.|.++++.-.+.-+ .. ..++|++++|.+.++ ++++..-..+ +.++.|++|++..|. +++.........+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357788888876443211 12 246888888888887 4444322222 357888888888853 444444444556888
Q ss_pred ccEEEccCccc-cc-ccchhhhcCCCCcEEEccCcccccc--cchhccCCCCCcEEEccCCccccCCCCccccccccCCC
Q 038605 103 LEELSLWGNNF-NG-TIPRFIFNASKLSILELVGNSFSGF--IPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCK 178 (485)
Q Consensus 103 L~~L~l~~~~~-~~-~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~ 178 (485)
|+++++++|.- ++ -+......+..++.+...+|.-... +...=+.+..+..+++..|...+... ....-..+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~---~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED---LWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH---HHHHhhhhh
Confidence 88888888743 32 1233444566677776666532211 11111244556666665653322211 111223567
Q ss_pred CCCEEEccCCCCCCcCCccccccccccccEEEccccc-CCcCcchhh-hcCCCCCEEEcCCCcCCC--CccccccCCCCC
Q 038605 179 SLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCN-ISGGISEEI-SNLTNLTTINLGGNKLNG--SIPIALGKLQKL 254 (485)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L 254 (485)
.|+.+..+++...++.....++.-.++|+.+.+..|+ +++.-...+ .+++.|+.+++.++.... .+...-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 7788888777665555545555555778888877775 222222223 346777778777776531 122233456777
Q ss_pred CeEeccCccC-CCCC----CcccCCCCCCCEEEccCCcCc-ccccccccCCCCCcEEeCCCC
Q 038605 255 QYLGLEDNKL-EGSI----PDDICRLDELYELELGGNKLS-GSIPACFGNLIALRILSLGSN 310 (485)
Q Consensus 255 ~~L~l~~~~~-~~~~----~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~ 310 (485)
+.+.+++|.. ++.. ...-.++..+..+.+++++.. +.....+..+++|+.+++.++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 7777777743 2221 112244566667777776543 333344556666666666555
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.51 E-value=1e-08 Score=87.66 Aligned_cols=42 Identities=24% Similarity=0.181 Sum_probs=20.1
Q ss_pred hhcCCCCCEEEcCCCcCCCCc----cccccCCCCCCeEeccCccCC
Q 038605 224 ISNLTNLTTINLGGNKLNGSI----PIALGKLQKLQYLGLEDNKLE 265 (485)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~ 265 (485)
+..+.+|+.|++++|.++... ...+...+.|++|.+..|-+.
T Consensus 210 l~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 210 LFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 344556666666666554211 122223344555555555544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.9e-08 Score=86.06 Aligned_cols=105 Identities=25% Similarity=0.323 Sum_probs=50.9
Q ss_pred ccEEEcccccCCcCcc-hhh-hcCCCCCEEEcCCCcCCC--CccccccCCCCCCeEeccCccCCCCCCccc-CCCCCCCE
Q 038605 206 LEIFLMYNCNISGGIS-EEI-SNLTNLTTINLGGNKLNG--SIPIALGKLQKLQYLGLEDNKLEGSIPDDI-CRLDELYE 280 (485)
Q Consensus 206 L~~L~l~~~~~~~~~~-~~l-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~ 280 (485)
++.+.+.++.+...-. ..+ ..+..++++++.+|.++. ++...+.++|.|+.|+++.|.+... ...+ ....+|+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence 4445555554433211 111 234566666666666652 2334455666666666666665522 1222 24445666
Q ss_pred EEccCCcCcc-cccccccCCCCCcEEeCCCCc
Q 038605 281 LELGGNKLSG-SIPACFGNLIALRILSLGSNE 311 (485)
Q Consensus 281 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 311 (485)
|-+.+..+.= .....+..+|.++.|+++.|.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 6665554321 122233445555555555553
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.46 E-value=3.7e-09 Score=95.79 Aligned_cols=297 Identities=16% Similarity=0.089 Sum_probs=165.2
Q ss_pred CCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEccccc-CCcCcch-hhhcC
Q 038605 150 NLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCN-ISGGISE-EISNL 227 (485)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~-~l~~~ 227 (485)
.|+.|.+.|+.-....+ .-.....|+++.+|.+.++....+.....+++.++.++.+.+..|. +++..-. ....+
T Consensus 139 ~lk~LSlrG~r~v~~ss---lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSS---LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcch---hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 35556666554333221 1122345666666666666544444445555555666666666642 3322222 23456
Q ss_pred CCCCEEEcCCCcCCCC--ccccccCCCCCCeEeccCccCCCCCCccc----CCCCCCCEEEccCCcC-ccccc-ccccCC
Q 038605 228 TNLTTINLGGNKLNGS--IPIALGKLQKLQYLGLEDNKLEGSIPDDI----CRLDELYELELGGNKL-SGSIP-ACFGNL 299 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~-~~~~~-~~~~~~ 299 (485)
++|+++++++|.--.. +...+.++..++.+...+|.-.+ .+.+ ....-+..+++..|.. ++... ..-..+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 7777777777643211 11233445556666566653221 1111 2344455666656632 22211 112456
Q ss_pred CCCcEEeCCCCc-CCC--CCccccCCCCCcEEEccCCcC-CCCCCccc-cCCCCCCeEEccCCccccc--CcccccCCCC
Q 038605 300 IALRILSLGSNE-LTS--IPLTFWNLKDILQLNISSNYF-TGPLPLEI-GNLKVLIGIDFSMNNFSGV--IPTEIGGLKN 372 (485)
Q Consensus 300 ~~L~~L~l~~~~-l~~--~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~ 372 (485)
..|+.|..+++. +++ +.....+.++|+.+-+.+|+. +......+ .+++.|+.+++.++..... +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 778888887763 333 222334668888888888763 22211222 3678888888888764422 2333457889
Q ss_pred CCEEECCCCcc-ccc----CCccccCCCCCCEEeCCCCcc-cccCcccccCCCCCCceeCCCCcccccCCC---CCCCCC
Q 038605 373 LEYLFLGYNRL-RGS----IPDSFGDLISLKFLNLSNNNL-FGAIPASLEKLSYLEDLNLSFNKLEGEIPR---GGSFGN 443 (485)
Q Consensus 373 L~~L~l~~~~l-~~~----~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~---~~~~~~ 443 (485)
|+.+.+++|.. ++. ....-.....|+.+.+.+|+. ++...+.+..+++|+.+++-+|+-...-+- ...+|+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~ 453 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPN 453 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcc
Confidence 99999998864 322 123335577899999999964 455666777889999999988876433222 256666
Q ss_pred CCcccccC
Q 038605 444 FSAESFEG 451 (485)
Q Consensus 444 L~~l~l~~ 451 (485)
++...+.+
T Consensus 454 i~v~a~~a 461 (483)
T KOG4341|consen 454 IKVHAYFA 461 (483)
T ss_pred ceehhhcc
Confidence 66655543
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=1.8e-09 Score=104.35 Aligned_cols=127 Identities=27% Similarity=0.278 Sum_probs=82.0
Q ss_pred CCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccC
Q 038605 277 ELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSM 356 (485)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 356 (485)
.|...+.+.|.+. .....+.-++.++.|+++.|++++.. .+..++.|++|||+.|.+.........+|. |..|++.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4556666666665 44455666777777777777777765 556677777777777777655444444555 77777777
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccC-CccccCCCCCCEEeCCCCccc
Q 038605 357 NNFSGVIPTEIGGLKNLEYLFLGYNRLRGSI-PDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 357 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~ 408 (485)
|.+... ..+.++.+|+.||+++|-+.+-. ..-+..+..|+.|+|.+|++.
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 776643 24566777777777777665311 122445667777777777764
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=1.2e-08 Score=87.18 Aligned_cols=139 Identities=17% Similarity=0.208 Sum_probs=65.4
Q ss_pred hhhcCCCCCEEEcCCCcCCCCccc----cccCCCCCCeEeccCccCCCCCCcc-------------cCCCCCCCEEEccC
Q 038605 223 EISNLTNLTTINLGGNKLNGSIPI----ALGKLQKLQYLGLEDNKLEGSIPDD-------------ICRLDELYELELGG 285 (485)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~ 285 (485)
.+.+||+|+.+++++|.+....+. .+++.+.|++|.+++|.+......- ...-|.|+.+....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 345556666666666655543332 2334455666666666544221111 12235566666666
Q ss_pred CcCccccc----ccccCCCCCcEEeCCCCcCCC--C----CccccCCCCCcEEEccCCcCCCC----CCccccCCCCCCe
Q 038605 286 NKLSGSIP----ACFGNLIALRILSLGSNELTS--I----PLTFWNLKDILQLNISSNYFTGP----LPLEIGNLKVLIG 351 (485)
Q Consensus 286 ~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~--~----~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~ 351 (485)
|++..-.. ..+..-..|+.+.+..|.|.. + -..+..+.+|+.|++.+|-++.. ...++..|+.|++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 65542111 112222456666666655543 1 11233445566666666655421 1123344555555
Q ss_pred EEccCCcccc
Q 038605 352 IDFSMNNFSG 361 (485)
Q Consensus 352 L~l~~~~~~~ 361 (485)
|.+..|-++.
T Consensus 247 L~lnDClls~ 256 (388)
T COG5238 247 LRLNDCLLSN 256 (388)
T ss_pred ccccchhhcc
Confidence 5555555443
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.11 E-value=1.1e-06 Score=89.16 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCc
Q 038605 75 VSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGN 135 (485)
Q Consensus 75 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (485)
+|+|++|.+++-.+........+.++|+|..||+++++++.. .+++++++|++|.+.+-
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNL 205 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCC
Confidence 444444444443332222223333344444444444444322 33444444444444433
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=5.3e-06 Score=68.30 Aligned_cols=104 Identities=25% Similarity=0.302 Sum_probs=53.4
Q ss_pred CCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccc-cchhhhcCCCCcEEE
Q 038605 53 NLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGT-IPRFIFNASKLSILE 131 (485)
Q Consensus 53 ~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 131 (485)
....+||++|++... ..|.+++.|.+|.+.+|.++...+.... .+++|..|.+.+|.+... ....+..+|+|++|.
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455566666655432 3455556666666666666554443333 255666666666655321 122344556666666
Q ss_pred ccCccccccc---chhccCCCCCcEEEccCC
Q 038605 132 LVGNSFSGFI---PNTFGNLRNLERLNLQDN 159 (485)
Q Consensus 132 l~~~~~~~~~---~~~~~~l~~L~~L~l~~~ 159 (485)
+-+|.+.... -..+..+++|+.||+.+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6655544221 112445666666666543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=2.9e-05 Score=72.74 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=45.0
Q ss_pred hhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCc
Q 038605 224 ISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALR 303 (485)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (485)
+..+.+++.|++++|.+. .+| .-..+|++|.+++|.-....|..+ .++|+.|++++|...... .++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccc
Confidence 455678888888888665 344 123468888887765444555433 246777777776321112 13566
Q ss_pred EEeCCCCcC
Q 038605 304 ILSLGSNEL 312 (485)
Q Consensus 304 ~L~l~~~~l 312 (485)
.|.+..+..
T Consensus 116 ~L~L~~n~~ 124 (426)
T PRK15386 116 SLEIKGSAT 124 (426)
T ss_pred eEEeCCCCC
Confidence 666655443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=6.5e-07 Score=90.70 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=80.1
Q ss_pred CCCCEEEccCCcCc-cccccc-ccCCCCCcEEeCCCCcCCC--CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCe
Q 038605 276 DELYELELGGNKLS-GSIPAC-FGNLIALRILSLGSNELTS--IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIG 351 (485)
Q Consensus 276 ~~L~~L~l~~~~~~-~~~~~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 351 (485)
.+|++|++++.... ...+.. -.-+|+|++|.+++-.+.. +.....++|+|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666664321 122222 2345677777776655543 334445667777777777766543 45566666666
Q ss_pred EEccCCcccc-cCcccccCCCCCCEEECCCCcccc------cCCccccCCCCCCEEeCCCCcccccCcccc-cCCCCCCc
Q 038605 352 IDFSMNNFSG-VIPTEIGGLKNLEYLFLGYNRLRG------SIPDSFGDLISLKFLNLSNNNLFGAIPASL-EKLSYLED 423 (485)
Q Consensus 352 L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~ 423 (485)
|.+.+-.+.. .....+-++++|+.||+|...... ...+.-..+|.|+.||.++..+.....+.+ ..-|+|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 6666655442 111234457777777777654331 112222336677777777776654433222 33455555
Q ss_pred eeCCC
Q 038605 424 LNLSF 428 (485)
Q Consensus 424 L~l~~ 428 (485)
+.+-+
T Consensus 280 i~~~~ 284 (699)
T KOG3665|consen 280 IAALD 284 (699)
T ss_pred hhhhh
Confidence 54443
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=2.8e-07 Score=70.68 Aligned_cols=114 Identities=22% Similarity=0.171 Sum_probs=73.4
Q ss_pred CCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCce
Q 038605 345 NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDL 424 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 424 (485)
....|+..+|++|.+....+..-..++..+.|++++|.+. .+|+.+..++.|+.|+++.|++. ..|..+..+.+|..|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 3445566677777766444333445667788888888887 56666778888888888888877 666666667777777
Q ss_pred eCCCCcccccCCCCCCCCCCCc-ccccCCCCccCCCCC
Q 038605 425 NLSFNKLEGEIPRGGSFGNFSA-ESFEGNELLCGSPNL 461 (485)
Q Consensus 425 ~l~~n~~~~~~p~~~~~~~L~~-l~l~~np~~c~~p~~ 461 (485)
+..+|.+. .+|..-..+.+.. ..+..+||-=+|+..
T Consensus 129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 77777764 4554333333332 444666666555433
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=6.7e-06 Score=50.86 Aligned_cols=37 Identities=38% Similarity=0.683 Sum_probs=20.8
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCcccee
Q 038605 29 DLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVG 66 (485)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~ 66 (485)
+|++|++++|.++ .+|..+.++++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666 344445666666666666666553
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=2.1e-05 Score=64.91 Aligned_cols=124 Identities=23% Similarity=0.191 Sum_probs=82.4
Q ss_pred CcEEEccCCcCCCCCCcccc-CCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCC
Q 038605 325 ILQLNISSNYFTGPLPLEIG-NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLS 403 (485)
Q Consensus 325 L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 403 (485)
=+++++++.++.... .++ ...+...+++++|.+... ..|..++.|.+|.+++|+|+...|..-..++.|+.|.+.
T Consensus 21 e~e~~LR~lkip~ie--nlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIE--NLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccccchh--hccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 345566665543211 122 234667788888887632 357778888889998888886666555557788888888
Q ss_pred CCccccc-CcccccCCCCCCceeCCCCccccc----CCCCCCCCCCCcccccCC
Q 038605 404 NNNLFGA-IPASLEKLSYLEDLNLSFNKLEGE----IPRGGSFGNFSAESFEGN 452 (485)
Q Consensus 404 ~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~~~L~~l~l~~n 452 (485)
+|.+-.. ....+..+|.|++|.+-+|++... .-..-.+|+|+.||+.+=
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8876422 234567788888888888888622 222367788888888763
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.81 E-value=7.5e-05 Score=59.52 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=39.3
Q ss_pred CCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCC
Q 038605 47 EIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASK 126 (485)
Q Consensus 47 ~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 126 (485)
.|.++++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.. .....+..+++++.+.+.. .+.......+..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc-cceeeeecccccccccccc-ccccccccccccccc
Confidence 444555555555543 244444445555555555555443 222 2222233344555555543 222122334444555
Q ss_pred CcEEEccCcccccccchhccCCCCCcEEEccC
Q 038605 127 LSILELVGNSFSGFIPNTFGNLRNLERLNLQD 158 (485)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 158 (485)
|+.+.+..+ +.......|.+. +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 555555433 333333445554 555555543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.79 E-value=6.9e-05 Score=70.25 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=78.4
Q ss_pred CCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCC-cCCCCCccccCCCCCcEEEccCC-cCCCCCCccccCCCCCC
Q 038605 273 CRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSN-ELTSIPLTFWNLKDILQLNISSN-YFTGPLPLEIGNLKVLI 350 (485)
Q Consensus 273 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~ 350 (485)
..+.+++.|++++|.+... | .-.++|++|.+++| .++.+|..+ .++|++|++++| .+. ..+ .+|+
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccc
Confidence 3457788888888876633 3 12346888888875 455566543 357888888887 333 222 3567
Q ss_pred eEEccCCcccccCcccccCC-CCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCC
Q 038605 351 GIDFSMNNFSGVIPTEIGGL-KNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFN 429 (485)
Q Consensus 351 ~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 429 (485)
.|++..+.... +..+ ++|++|.+.+++........-.-+++|++|++++|... .+|..+. .+|+.|.++.+
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 77776554331 1222 35667776543311011000112367888888887755 3444433 57777877665
No 62
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.2e-05 Score=47.85 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=14.9
Q ss_pred CCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCC
Q 038605 301 ALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFT 336 (485)
Q Consensus 301 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~ 336 (485)
+|++|++++|+++++|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444444433444444444444444443
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.73 E-value=1.7e-06 Score=66.54 Aligned_cols=90 Identities=24% Similarity=0.309 Sum_probs=40.6
Q ss_pred cCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEE
Q 038605 226 NLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
....|+.+++++|.+....+.....++.++.+++.+|.+. ..|..+..++.|+.|+++.|.+. ..+..+..+.++-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 3344555555555554222222223344555555555554 33434555555555555555444 222333334444444
Q ss_pred eCCCCcCCCCCc
Q 038605 306 SLGSNELTSIPL 317 (485)
Q Consensus 306 ~l~~~~l~~~~~ 317 (485)
+..++.+..++.
T Consensus 129 ds~~na~~eid~ 140 (177)
T KOG4579|consen 129 DSPENARAEIDV 140 (177)
T ss_pred cCCCCccccCcH
Confidence 444444444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.65 E-value=0.00026 Score=56.40 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=67.8
Q ss_pred ccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCc
Q 038605 24 FGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNL 103 (485)
Q Consensus 24 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 103 (485)
|..+.+|+.+.+.. .+.......|.++++|+.+.+.++ +......+|.+++.++.+.+.+ .+.. .....+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccc-cccccccccccc
Confidence 78888999999885 566566778899989999999885 6666777888998899999976 3333 333444458899
Q ss_pred cEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCc
Q 038605 104 EELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLE 152 (485)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 152 (485)
+.+++..+ +.......+.+. +|+.+.+.. .+.......|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 99999765 443455667776 889988875 34445556677666653
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.51 E-value=4.9e-05 Score=65.51 Aligned_cols=68 Identities=22% Similarity=0.344 Sum_probs=30.9
Q ss_pred CChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCc--cceecCCccccCCCCCCEEEccCCccc
Q 038605 20 IPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQN--KLVGIVPAAIFNVSTLKLLQLQNNSLL 89 (485)
Q Consensus 20 lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~--~i~~~~~~~l~~l~~L~~L~L~~~~~~ 89 (485)
+......+..|+.|++.++.++. +. .|..+|+|+.|.++.| .+..-+.-....+++|+++++++|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33333444445555555554441 11 2444555555555555 333223323334455555555555544
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=3.9e-06 Score=72.52 Aligned_cols=100 Identities=23% Similarity=0.171 Sum_probs=77.9
Q ss_pred CCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc--cccCCCCCcE
Q 038605 250 KLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL--TFWNLKDILQ 327 (485)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~ 327 (485)
.+.+.++|+.++|.++++ .....++.|+.|.|+-|.|+.. ..+..|++|++|.+..|.|.++.. .+.++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356778889999988754 3356889999999999988743 567889999999999999988654 5678999999
Q ss_pred EEccCCcCCCCCCcc-----ccCCCCCCeEE
Q 038605 328 LNISSNYFTGPLPLE-----IGNLKVLIGID 353 (485)
Q Consensus 328 L~l~~~~l~~~~~~~-----~~~~~~L~~L~ 353 (485)
|+|..|+-.+..+.. +..+|+|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999998876654432 44677777765
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=2.2e-05 Score=78.43 Aligned_cols=61 Identities=21% Similarity=0.150 Sum_probs=27.1
Q ss_pred CCCCCeEeccCcc-CCCCCCcccC-CCCCCCEEEccCCc-Ccccccc-cccCCCCCcEEeCCCCc
Q 038605 251 LQKLQYLGLEDNK-LEGSIPDDIC-RLDELYELELGGNK-LSGSIPA-CFGNLIALRILSLGSNE 311 (485)
Q Consensus 251 ~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~ 311 (485)
+.+|+.|+++.+. +++.....+. .+++|+.|.+.+|. +++.... ....+++|++|+++.|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3555555555554 3333222222 14555555555554 3322211 22345555555555553
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=8.7e-06 Score=70.41 Aligned_cols=102 Identities=24% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccE
Q 038605 26 NLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEE 105 (485)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 105 (485)
.+.+.+.|++.+|+++++ . ....++.|++|.|+-|+|+.. ..+..|++|++|.|+.|.|.+.....-..++|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 355678888899988732 2 356789999999999988765 457788889999999888877666666667888888
Q ss_pred EEccCcccccccc-----hhhhcCCCCcEEE
Q 038605 106 LSLWGNNFNGTIP-----RFIFNASKLSILE 131 (485)
Q Consensus 106 L~l~~~~~~~~~~-----~~l~~l~~L~~L~ 131 (485)
|-+..|+-.+..+ ..+.-+|+|+.|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887776554332 2334466666664
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.08 E-value=9e-05 Score=73.98 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=18.1
Q ss_pred CcEEeCCCCcCCCCCc--ccc-CCCCCcEEEccCCcC
Q 038605 302 LRILSLGSNELTSIPL--TFW-NLKDILQLNISSNYF 335 (485)
Q Consensus 302 L~~L~l~~~~l~~~~~--~~~-~~~~L~~L~l~~~~l 335 (485)
++.|++..+....... ... .+..+..+++.++..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 6777777775444211 111 145566666666654
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.02 E-value=0.00034 Score=60.45 Aligned_cols=88 Identities=23% Similarity=0.244 Sum_probs=45.8
Q ss_pred ccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCC--cCCCCCCccccCCCCCCeEEccCCccccc-CcccccCCCC
Q 038605 296 FGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSN--YFTGPLPLEIGNLKVLIGIDFSMNNFSGV-IPTEIGGLKN 372 (485)
Q Consensus 296 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~ 372 (485)
...+..|+.+.+.+..++.+.. +..+++|+.|.++.| .+.+........+++|+++++++|++... -...+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3444566666666666555431 234566777777776 44333333333446666666666665421 1122334455
Q ss_pred CCEEECCCCccc
Q 038605 373 LEYLFLGYNRLR 384 (485)
Q Consensus 373 L~~L~l~~~~l~ 384 (485)
|..|++.+|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 556666665544
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.002 Score=53.53 Aligned_cols=81 Identities=14% Similarity=0.058 Sum_probs=41.9
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccC-ccccc-CCCCCCEEECCCCc-ccccCCccccCCCCCCEEe
Q 038605 325 ILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVI-PTEIG-GLKNLEYLFLGYNR-LRGSIPDSFGDLISLKFLN 401 (485)
Q Consensus 325 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~-~l~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~ 401 (485)
++.++-+++.+.......+..++.++.|.+.+|.-.+.+ .+.+. -.++|+.|+|++|+ |++....++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 455666666665555555556666666666666533221 11111 23556666666553 4444444455555555555
Q ss_pred CCCC
Q 038605 402 LSNN 405 (485)
Q Consensus 402 l~~~ 405 (485)
+.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 5544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.85 E-value=0.013 Score=29.85 Aligned_cols=19 Identities=42% Similarity=0.558 Sum_probs=9.4
Q ss_pred CcEEEccCCcccccCCcCCC
Q 038605 30 LEQMSLWENNLRGEIPLEIG 49 (485)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~ 49 (485)
|++|++++|.++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 3443343
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.27 E-value=0.0002 Score=69.71 Aligned_cols=107 Identities=25% Similarity=0.218 Sum_probs=57.9
Q ss_pred CCEEEcCCCcCCCC----ccccccCCCCCCeEeccCccCCCCCCc----ccCCC-CCCCEEEccCCcCcccc----cccc
Q 038605 230 LTTINLGGNKLNGS----IPIALGKLQKLQYLGLEDNKLEGSIPD----DICRL-DELYELELGGNKLSGSI----PACF 296 (485)
Q Consensus 230 L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~----~~~~ 296 (485)
+..+.+.+|.+... ....+...+.|+.|++++|.+.+.... .+... ..++.|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777776532 223445667777778877777643222 22222 45566666666655332 2334
Q ss_pred cCCCCCcEEeCCCCcCCC-----CCcccc----CCCCCcEEEccCCcCC
Q 038605 297 GNLIALRILSLGSNELTS-----IPLTFW----NLKDILQLNISSNYFT 336 (485)
Q Consensus 297 ~~~~~L~~L~l~~~~l~~-----~~~~~~----~~~~L~~L~l~~~~l~ 336 (485)
.....++.++++.|.+.. ++..+. ...+++.|++.+|.++
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 446667777777776543 122222 2445555666555554
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.0078 Score=50.15 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=53.5
Q ss_pred CCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccc-cCCcCcchhhhcCC
Q 038605 150 NLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNC-NISGGISEEISNLT 228 (485)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~ 228 (485)
.++.++.+++.+... -...+..+++++.+.+.++..-++.....++...++|+.|++++| ++++..-.++..++
T Consensus 102 ~IeaVDAsds~I~~e-----Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-----GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHH-----HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 356666666666554 234566667777777777765555544555556677777777766 35655556677777
Q ss_pred CCCEEEcCCC
Q 038605 229 NLTTINLGGN 238 (485)
Q Consensus 229 ~L~~L~l~~~ 238 (485)
+|+.|.+.+-
T Consensus 177 nLr~L~l~~l 186 (221)
T KOG3864|consen 177 NLRRLHLYDL 186 (221)
T ss_pred hhHHHHhcCc
Confidence 7777776553
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.89 E-value=0.038 Score=28.13 Aligned_cols=21 Identities=48% Similarity=0.700 Sum_probs=12.9
Q ss_pred CCCEEeccCccceecCCccccC
Q 038605 53 NLEELDLRQNKLVGIVPAAIFN 74 (485)
Q Consensus 53 ~L~~L~L~~~~i~~~~~~~l~~ 74 (485)
+|++|++++|.++. +|..|.+
T Consensus 1 ~L~~Ldls~n~l~~-ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS-IPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESE-EGTTTTT
T ss_pred CccEEECCCCcCEe-CChhhcC
Confidence 46777777777773 3433543
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.46 E-value=0.048 Score=25.72 Aligned_cols=12 Identities=58% Similarity=0.794 Sum_probs=3.9
Q ss_pred CcEEeCCCCcCC
Q 038605 302 LRILSLGSNELT 313 (485)
Q Consensus 302 L~~L~l~~~~l~ 313 (485)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.45 E-value=0.00095 Score=65.15 Aligned_cols=210 Identities=23% Similarity=0.220 Sum_probs=115.0
Q ss_pred CCcEEEccCCccccc----CCcCCCCCCCCCEEeccCccceecCCc----cccCC-CCCCEEEccCCccccccchhhhh-
Q 038605 29 DLEQMSLWENNLRGE----IPLEIGNLQNLEELDLRQNKLVGIVPA----AIFNV-STLKLLQLQNNSLLGCLSSIADV- 98 (485)
Q Consensus 29 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~~~~~----~l~~l-~~L~~L~L~~~~~~~~~~~~~~~- 98 (485)
.+.+|.+.+|.+... +...+...+.|..|++++|.+.+.... .+... ..+++|++..|.++.........
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 367777777776633 333455677788888888776643211 12222 45666777777666443322221
Q ss_pred --cCCCccEEEccCccccc----ccchhhh----cCCCCcEEEccCcccccc----cchhccCCCC-CcEEEccCCcccc
Q 038605 99 --RLPNLEELSLWGNNFNG----TIPRFIF----NASKLSILELVGNSFSGF----IPNTFGNLRN-LERLNLQDNYLTS 163 (485)
Q Consensus 99 --~l~~L~~L~l~~~~~~~----~~~~~l~----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~l~~~~~~~ 163 (485)
....++.++++.|.+.. ..+..+. ...++++|.+.+|.++.. ...++...+. +..+++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 15667777777776531 1222222 356778888877766532 2223444444 5667777776665
Q ss_pred CCCCccccccccCC-CCCCEEEccCCCCCCcCCc---cccccccccccEEEcccccCCcCcch----hhhcCCCCCEEEc
Q 038605 164 STPELSFLSSLSNC-KSLTLIALSNNPLDGNLRK---TSVGNLSHSLEIFLMYNCNISGGISE----EISNLTNLTTINL 235 (485)
Q Consensus 164 ~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l 235 (485)
.+... ....+... ..++.+++..|.+...... ..+..+ +.++.+.+.++.+...... .+.....+.++.+
T Consensus 248 ~g~~~-L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l 325 (478)
T KOG4308|consen 248 VGVEK-LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVL 325 (478)
T ss_pred HHHHH-HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhh-HHHHHhhcccCccccHHHHHHHHHhhhcccchhhhc
Confidence 42211 22344444 6778888888877654432 122223 4788888888776653322 2233345555555
Q ss_pred CCCcC
Q 038605 236 GGNKL 240 (485)
Q Consensus 236 ~~~~~ 240 (485)
.++..
T Consensus 326 ~~~~~ 330 (478)
T KOG4308|consen 326 GGTGK 330 (478)
T ss_pred cccCc
Confidence 54443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.33 E-value=0.0085 Score=51.01 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=58.2
Q ss_pred ccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCC
Q 038605 343 IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLE 422 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 422 (485)
+......+.|+++.|++... ..-|+-++.+..|+++.+.+. ..|+.+.+...++++++..|..+ ..|..+...+.++
T Consensus 38 i~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 34455566666666665422 223455667777777777776 66777777777777777777666 6677777777777
Q ss_pred ceeCCCCccc
Q 038605 423 DLNLSFNKLE 432 (485)
Q Consensus 423 ~L~l~~n~~~ 432 (485)
+++..++++.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777777764
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.37 E-value=0.33 Score=25.77 Aligned_cols=15 Identities=53% Similarity=0.745 Sum_probs=6.9
Q ss_pred CCCCEEeccCcccee
Q 038605 52 QNLEELDLRQNKLVG 66 (485)
Q Consensus 52 ~~L~~L~L~~~~i~~ 66 (485)
++|++|+|++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344444444444443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.37 E-value=0.33 Score=25.77 Aligned_cols=15 Identities=53% Similarity=0.745 Sum_probs=6.9
Q ss_pred CCCCEEeccCcccee
Q 038605 52 QNLEELDLRQNKLVG 66 (485)
Q Consensus 52 ~~L~~L~L~~~~i~~ 66 (485)
++|++|+|++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 344444444444443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.00 E-value=0.29 Score=25.37 Aligned_cols=10 Identities=50% Similarity=0.587 Sum_probs=3.0
Q ss_pred ccEEEccCcc
Q 038605 103 LEELSLWGNN 112 (485)
Q Consensus 103 L~~L~l~~~~ 112 (485)
|++|++++|.
T Consensus 4 L~~L~l~~n~ 13 (24)
T PF13516_consen 4 LETLDLSNNQ 13 (24)
T ss_dssp -SEEE-TSSB
T ss_pred CCEEEccCCc
Confidence 3333333333
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=83.86 E-value=0.55 Score=54.63 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=26.7
Q ss_pred eCCCCcccccCCCC--CCCCCCCcccccCCCCccCCCC
Q 038605 425 NLSFNKLEGEIPRG--GSFGNFSAESFEGNELLCGSPN 460 (485)
Q Consensus 425 ~l~~n~~~~~~p~~--~~~~~L~~l~l~~np~~c~~p~ 460 (485)
||++|+|. .+|.. ..+++|+.|+|++|||.|+|..
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCcccccccc
Confidence 46778876 55543 6678888899999999999943
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.83 E-value=0.032 Score=47.69 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=48.2
Q ss_pred ccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCC
Q 038605 72 IFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNL 151 (485)
Q Consensus 72 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 151 (485)
+......+.||++.|++........ .++.|..++++.+.+. ..|..+.+...++.++...|... ..|..++..+++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s--~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFS--ILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchH--HHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4445555666666665543222222 2556666666666655 55666666666666666555544 445556666666
Q ss_pred cEEEccCCcc
Q 038605 152 ERLNLQDNYL 161 (485)
Q Consensus 152 ~~L~l~~~~~ 161 (485)
++++.-++.+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 6666665543
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.53 E-value=0.98 Score=44.04 Aligned_cols=81 Identities=25% Similarity=0.100 Sum_probs=47.4
Q ss_pred cCCCCCCEEECCCCcccccC--CccccCCCCCCEEeCCCCcccccCcccccC--CCCCCceeCCCCcccccCCCC-----
Q 038605 368 GGLKNLEYLFLGYNRLRGSI--PDSFGDLISLKFLNLSNNNLFGAIPASLEK--LSYLEDLNLSFNKLEGEIPRG----- 438 (485)
Q Consensus 368 ~~l~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--l~~L~~L~l~~n~~~~~~p~~----- 438 (485)
.+.+.+..+++++|++.... -..-...|+|+.|+|++|...-.....+.+ ...|++|.+.||++......-
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 45677888888888875321 111233678888888888222111122322 345778888888876443321
Q ss_pred ---CCCCCCCccc
Q 038605 439 ---GSFGNFSAES 448 (485)
Q Consensus 439 ---~~~~~L~~l~ 448 (485)
..||+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 4677776654
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.93 E-value=2.3 Score=22.62 Aligned_cols=18 Identities=39% Similarity=0.599 Sum_probs=13.0
Q ss_pred CCCcEEeCCCCcCCCCCc
Q 038605 300 IALRILSLGSNELTSIPL 317 (485)
Q Consensus 300 ~~L~~L~l~~~~l~~~~~ 317 (485)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 467777777777777765
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.78 E-value=1.3 Score=43.15 Aligned_cols=64 Identities=20% Similarity=0.179 Sum_probs=37.8
Q ss_pred CCCCCCeEEccCCccccc--CcccccCCCCCCEEECCCCcccccCCccccC--CCCCCEEeCCCCccc
Q 038605 345 NLKVLIGIDFSMNNFSGV--IPTEIGGLKNLEYLFLGYNRLRGSIPDSFGD--LISLKFLNLSNNNLF 408 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~--~~~L~~L~l~~~~~~ 408 (485)
..+.+..+++++|++... +...-...|+|..|+|++|...-....++.+ ...|++|-+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 456677788888876532 1112234578888888888322111122222 345788888888874
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.63 E-value=43 Score=32.60 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=27.8
Q ss_pred CCEEECCCCcccccC---CccccCCCCCCEEeCCCCccccc----CcccccCCCCCCceeCCCCcc
Q 038605 373 LEYLFLGYNRLRGSI---PDSFGDLISLKFLNLSNNNLFGA----IPASLEKLSYLEDLNLSFNKL 431 (485)
Q Consensus 373 L~~L~l~~~~l~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~ 431 (485)
+.++.++.|+..... ......-..+..|++++|...+. +|.++.....++.+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 455555655554211 11223345566666666654322 334444444455555554443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.20 E-value=3.9 Score=21.77 Aligned_cols=14 Identities=71% Similarity=0.911 Sum_probs=7.7
Q ss_pred CCCCEEeccCccce
Q 038605 52 QNLEELDLRQNKLV 65 (485)
Q Consensus 52 ~~L~~L~L~~~~i~ 65 (485)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 35555555555554
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.56 E-value=3.4 Score=22.38 Aligned_cols=11 Identities=55% Similarity=0.748 Sum_probs=4.5
Q ss_pred CCEEEccCCcc
Q 038605 78 LKLLQLQNNSL 88 (485)
Q Consensus 78 L~~L~L~~~~~ 88 (485)
|++|+|++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 34444444433
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.56 E-value=55 Score=31.88 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=9.8
Q ss_pred CCCCEEeccCccceecCC
Q 038605 52 QNLEELDLRQNKLVGIVP 69 (485)
Q Consensus 52 ~~L~~L~L~~~~i~~~~~ 69 (485)
+.+++++++.|.+.+..+
T Consensus 165 pr~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVP 182 (553)
T ss_pred chhhhhccCCCcccccCC
Confidence 455666666665544433
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.14 E-value=9 Score=20.14 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=9.7
Q ss_pred CCCCCEEeCCCCc-ccc
Q 038605 394 LISLKFLNLSNNN-LFG 409 (485)
Q Consensus 394 ~~~L~~L~l~~~~-~~~ 409 (485)
+++|++|++++|. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 3567777777774 443
No 92
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=31.76 E-value=21 Score=22.33 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=7.6
Q ss_pred CCCccCCCC
Q 038605 452 NELLCGSPN 460 (485)
Q Consensus 452 np~~c~~p~ 460 (485)
|||.|+|..
T Consensus 1 NP~~CdC~l 9 (51)
T smart00082 1 NPFICDCEL 9 (51)
T ss_pred CCccCcCCc
Confidence 899999943
No 93
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=20.63 E-value=99 Score=18.71 Aligned_cols=7 Identities=57% Similarity=0.467 Sum_probs=3.2
Q ss_pred CCCEEeC
Q 038605 396 SLKFLNL 402 (485)
Q Consensus 396 ~L~~L~l 402 (485)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4444444
Done!