Query 038605
Match_columns 485
No_of_seqs 277 out of 3605
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 22:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-53 6.1E-58 443.9 36.0 449 24-483 219-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-49 3.7E-54 415.4 33.5 428 25-463 197-725 (768)
3 3t6q_A CD180 antigen; protein- 100.0 6.4E-49 2.2E-53 400.8 38.0 446 8-460 15-565 (606)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-47 4.7E-52 391.0 36.1 443 8-460 14-563 (606)
5 2z63_A TOLL-like receptor 4, v 100.0 2.3E-47 7.7E-52 386.9 34.4 441 9-463 11-539 (570)
6 3t6q_A CD180 antigen; protein- 100.0 1.8E-46 6.1E-51 382.8 40.1 413 31-454 15-512 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-46 5.6E-51 388.1 39.1 445 14-464 82-631 (680)
8 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-46 2E-50 391.2 33.6 450 4-461 2-566 (844)
9 1ziw_A TOLL-like receptor 3; i 100.0 6.8E-44 2.3E-48 368.6 38.5 440 7-453 6-547 (680)
10 2z81_A CD282 antigen, TOLL-lik 100.0 1E-44 3.5E-49 365.6 25.7 440 4-462 4-517 (549)
11 4eco_A Uncharacterized protein 100.0 5.8E-44 2E-48 363.9 29.0 348 68-431 198-599 (636)
12 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-44 1.2E-48 358.9 25.0 430 9-460 4-486 (520)
13 2z63_A TOLL-like receptor 4, v 100.0 6.3E-43 2.1E-47 354.3 31.8 438 10-459 33-560 (570)
14 3vq2_A TLR4, TOLL-like recepto 100.0 3E-42 1E-46 351.6 34.4 414 30-455 13-534 (606)
15 4ecn_A Leucine-rich repeat pro 100.0 1.1E-42 3.7E-47 360.2 29.3 348 68-432 440-840 (876)
16 4g8a_A TOLL-like receptor 4; l 100.0 8.1E-42 2.8E-46 350.8 34.9 444 8-459 34-584 (635)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.2E-42 2.1E-46 345.4 27.8 431 7-461 33-516 (562)
18 4eco_A Uncharacterized protein 100.0 5.2E-42 1.8E-46 349.5 27.4 414 28-457 81-602 (636)
19 2z81_A CD282 antigen, TOLL-lik 100.0 6.5E-41 2.2E-45 337.8 27.6 416 10-437 31-515 (549)
20 4ecn_A Leucine-rich repeat pro 100.0 1.3E-40 4.4E-45 344.7 28.8 371 44-431 440-863 (876)
21 3v47_A TOLL-like receptor 5B a 100.0 4.6E-40 1.6E-44 323.7 30.7 384 8-464 13-417 (455)
22 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-40 1.5E-44 346.5 31.9 417 31-458 7-541 (844)
23 3v47_A TOLL-like receptor 5B a 100.0 1.6E-39 5.4E-44 319.9 29.1 367 10-438 35-414 (455)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-39 4.1E-44 326.1 22.0 409 8-436 24-485 (520)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.1E-37 2.1E-41 309.0 26.4 416 8-437 55-515 (562)
26 1o6v_A Internalin A; bacterial 100.0 8.6E-36 2.9E-40 293.4 33.7 346 26-433 44-389 (466)
27 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-35 7.3E-40 303.1 33.3 421 10-436 57-584 (635)
28 1o6v_A Internalin A; bacterial 100.0 3.4E-35 1.2E-39 289.1 31.9 346 50-456 44-389 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 8.5E-36 2.9E-40 290.7 26.3 382 12-456 18-430 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 3.9E-35 1.3E-39 290.1 28.7 318 8-359 14-332 (477)
31 2id5_A Lingo-1, leucine rich r 100.0 3.2E-35 1.1E-39 290.7 26.1 319 55-408 14-333 (477)
32 3o6n_A APL1; leucine-rich repe 100.0 1.2E-33 4E-38 272.0 26.6 312 75-458 44-355 (390)
33 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-33 4.2E-38 275.7 26.6 350 21-438 35-393 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 3.3E-33 1.1E-37 268.8 27.0 311 26-409 43-353 (390)
35 1jl5_A Outer protein YOPM; leu 100.0 2.1E-33 7.1E-38 273.9 24.7 358 16-436 46-433 (454)
36 4fmz_A Internalin; leucine ric 100.0 2E-32 6.9E-37 259.2 29.6 307 72-432 40-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 2.8E-32 9.7E-37 258.2 29.6 305 50-408 42-346 (347)
38 1ogq_A PGIP-2, polygalacturona 100.0 2.4E-33 8.1E-38 260.7 19.5 256 204-461 50-310 (313)
39 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-32 7.2E-37 267.0 27.1 353 39-458 29-389 (457)
40 3oja_B Anopheles plasmodium-re 100.0 2E-32 6.8E-37 277.5 27.2 312 75-458 50-361 (597)
41 3oja_B Anopheles plasmodium-re 100.0 3.2E-32 1.1E-36 276.0 27.3 309 26-383 49-357 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 2E-35 6.8E-40 291.2 -2.9 358 28-408 3-411 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-30 3.7E-35 245.5 25.1 266 14-343 13-284 (332)
44 1xku_A Decorin; proteoglycan, 100.0 8.1E-30 2.8E-34 239.4 29.0 296 29-405 32-329 (330)
45 1xku_A Decorin; proteoglycan, 100.0 4.8E-29 1.7E-33 234.1 28.2 249 7-296 33-283 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 6E-29 2E-33 233.6 26.0 287 77-430 34-331 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-32 3.7E-37 271.6 -4.6 379 52-455 3-440 (461)
48 3ogk_B Coronatine-insensitive 100.0 5.5E-32 1.9E-36 275.2 -2.9 425 20-452 65-548 (592)
49 1ogq_A PGIP-2, polygalacturona 100.0 8E-29 2.7E-33 230.2 17.0 226 204-432 76-304 (313)
50 3zyi_A Leucine-rich repeat-con 100.0 1.3E-27 4.6E-32 234.1 23.2 230 228-459 75-307 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 1.5E-27 5.1E-32 232.9 23.2 230 228-459 64-296 (440)
52 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.7E-32 222.4 19.8 232 228-460 28-266 (306)
53 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.6E-33 233.2 12.0 259 204-463 52-322 (353)
54 1ozn_A Reticulon 4 receptor; N 100.0 6.3E-27 2.1E-31 214.9 21.0 207 252-458 32-241 (285)
55 3ogk_B Coronatine-insensitive 99.9 1.1E-29 3.9E-34 258.1 1.9 399 25-429 109-548 (592)
56 2z66_A Variable lymphocyte rec 99.9 2.6E-27 9E-32 219.8 16.3 256 204-460 28-292 (306)
57 1ozn_A Reticulon 4 receptor; N 99.9 7.4E-27 2.5E-31 214.4 18.5 234 227-460 31-266 (285)
58 3zyi_A Leucine-rich repeat-con 99.9 4.8E-26 1.7E-30 223.0 24.1 244 8-287 57-301 (452)
59 2z80_A TOLL-like receptor 2, v 99.9 8E-27 2.7E-31 221.0 17.7 275 8-338 34-316 (353)
60 4fcg_A Uncharacterized protein 99.9 1.7E-26 5.7E-31 215.8 19.4 224 204-431 81-313 (328)
61 3zyj_A Leucine-rich repeat-con 99.9 2.6E-25 8.9E-30 217.0 25.0 246 151-407 45-291 (440)
62 4fcg_A Uncharacterized protein 99.9 6.2E-26 2.1E-30 211.9 18.0 223 226-453 79-312 (328)
63 2p1m_B Transport inhibitor res 99.9 1.3E-28 4.6E-33 250.4 -2.0 401 23-432 61-519 (594)
64 2z62_A TOLL-like receptor 4, v 99.9 4.3E-25 1.5E-29 201.6 19.7 228 233-464 12-246 (276)
65 2o6q_A Variable lymphocyte rec 99.9 1.5E-24 5E-29 197.2 22.6 185 277-461 38-224 (270)
66 3o53_A Protein LRIM1, AGAP0063 99.9 3.7E-26 1.3E-30 212.8 11.9 236 203-452 33-272 (317)
67 1p9a_G Platelet glycoprotein I 99.9 1.3E-24 4.3E-29 199.2 21.1 203 250-458 8-211 (290)
68 2p1m_B Transport inhibitor res 99.9 4.8E-28 1.6E-32 246.3 -2.3 416 31-454 46-518 (594)
69 3oja_A Leucine-rich immune mol 99.9 2.4E-25 8.4E-30 219.1 12.7 245 204-462 34-289 (487)
70 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-23 1.2E-27 207.7 28.3 260 28-362 40-299 (622)
71 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-23 1.6E-27 206.9 28.9 165 228-416 141-305 (622)
72 3oja_A Leucine-rich immune mol 99.9 4E-25 1.4E-29 217.5 13.4 221 226-458 32-253 (487)
73 1wwl_A Monocyte differentiatio 99.9 4.8E-26 1.6E-30 211.5 6.3 200 250-454 93-308 (312)
74 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-26 2.1E-30 211.3 5.0 238 100-405 33-272 (317)
75 1wwl_A Monocyte differentiatio 99.9 1.1E-25 3.7E-30 209.2 5.4 222 206-433 65-310 (312)
76 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.6E-27 184.2 23.8 205 229-436 17-222 (270)
77 1p9a_G Platelet glycoprotein I 99.9 7.1E-23 2.4E-27 187.6 21.0 203 224-432 6-208 (290)
78 2z62_A TOLL-like receptor 4, v 99.9 3.1E-23 1.1E-27 189.3 18.6 210 228-438 28-243 (276)
79 3rfs_A Internalin B, repeat mo 99.9 6.2E-23 2.1E-27 186.6 19.1 204 224-438 37-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 2.1E-22 7.3E-27 183.1 18.8 213 229-453 20-233 (272)
81 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.5E-26 180.4 17.9 194 225-433 38-231 (308)
82 2xwt_C Thyrotropin receptor; s 99.9 9.1E-22 3.1E-26 175.4 14.0 196 253-453 32-237 (239)
83 4glp_A Monocyte differentiatio 99.9 1.1E-21 3.8E-26 182.0 14.9 201 228-454 91-306 (310)
84 3m19_A Variable lymphocyte rec 99.9 5.8E-21 2E-25 171.4 18.3 179 253-434 15-194 (251)
85 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.5E-26 173.3 13.8 198 228-430 31-237 (239)
86 2ast_B S-phase kinase-associat 99.9 2.9E-22 1E-26 188.5 8.8 220 228-453 70-304 (336)
87 3m19_A Variable lymphocyte rec 99.9 1.2E-20 4E-25 169.4 17.7 180 228-410 14-194 (251)
88 1h6u_A Internalin H; cell adhe 99.9 6.5E-21 2.2E-25 176.3 16.3 195 248-456 37-231 (308)
89 4glp_A Monocyte differentiatio 99.9 3.7E-21 1.3E-25 178.4 14.2 176 278-457 93-286 (310)
90 3goz_A Leucine-rich repeat-con 99.9 8.2E-22 2.8E-26 187.0 9.3 131 33-163 3-152 (362)
91 2ca6_A RAN GTPase-activating p 99.9 1.7E-22 5.7E-27 193.8 4.3 100 14-114 18-135 (386)
92 3goz_A Leucine-rich repeat-con 99.8 3E-22 1E-26 190.0 4.6 250 183-434 3-299 (362)
93 2ast_B S-phase kinase-associat 99.8 7.5E-22 2.6E-26 185.7 7.3 224 53-310 48-282 (336)
94 2ca6_A RAN GTPase-activating p 99.8 1.7E-22 5.9E-27 193.6 1.7 230 223-452 55-340 (386)
95 2v9t_B SLIT homolog 2 protein 99.8 8.3E-20 2.8E-24 160.0 15.6 155 303-459 14-169 (220)
96 3e6j_A Variable lymphocyte rec 99.8 2.2E-19 7.6E-24 158.4 15.6 159 301-462 20-179 (229)
97 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-19 8.9E-24 156.9 15.3 155 303-459 14-170 (220)
98 4ay9_X Follicle-stimulating ho 99.8 2.4E-19 8.1E-24 169.2 15.8 226 228-458 30-261 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.4E-18 4.8E-23 151.2 16.0 155 277-438 29-184 (208)
100 2o6s_A Variable lymphocyte rec 99.8 2.9E-18 1E-22 149.1 16.9 166 279-453 10-176 (208)
101 2xot_A Amphoterin-induced prot 99.8 4.9E-19 1.7E-23 167.7 12.5 157 302-459 41-206 (361)
102 4ay9_X Follicle-stimulating ho 99.8 7.8E-18 2.7E-22 158.8 19.1 244 4-286 7-256 (350)
103 1h6t_A Internalin B; cell adhe 99.8 3E-18 1E-22 157.0 15.5 171 225-408 43-213 (291)
104 2v9t_B SLIT homolog 2 protein 99.8 3.8E-18 1.3E-22 149.4 15.4 154 8-164 14-167 (220)
105 3cvr_A Invasion plasmid antige 99.8 8.9E-18 3E-22 166.5 18.8 182 229-437 60-248 (571)
106 1h6t_A Internalin B; cell adhe 99.8 3.5E-18 1.2E-22 156.5 14.3 186 233-433 29-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 2.8E-18 9.5E-23 150.3 11.4 132 303-434 35-168 (220)
108 3e6j_A Variable lymphocyte rec 99.8 1.4E-17 4.9E-22 146.8 15.9 154 7-164 21-174 (229)
109 1m9s_A Internalin B; cell inva 99.8 2.5E-17 8.7E-22 165.1 19.0 171 225-408 40-210 (605)
110 2xot_A Amphoterin-induced prot 99.7 9.8E-18 3.3E-22 158.7 13.7 179 8-194 21-205 (361)
111 1m9s_A Internalin B; cell inva 99.7 2.5E-17 8.4E-22 165.2 16.6 168 204-384 43-210 (605)
112 4ezg_A Putative uncharacterize 99.7 1E-17 3.4E-22 144.3 11.8 132 296-432 62-194 (197)
113 4ezg_A Putative uncharacterize 99.7 8.6E-18 2.9E-22 144.7 11.3 151 297-453 41-192 (197)
114 3cvr_A Invasion plasmid antige 99.7 5.4E-17 1.8E-21 160.9 18.1 168 228-419 80-254 (571)
115 1w8a_A SLIT protein; signaling 99.7 3.8E-17 1.3E-21 139.8 11.1 130 303-434 11-141 (192)
116 1xeu_A Internalin C; cellular 99.7 3.2E-17 1.1E-21 147.7 10.7 170 251-434 18-187 (263)
117 1xeu_A Internalin C; cellular 99.7 3.9E-17 1.3E-21 147.1 10.8 170 227-410 18-187 (263)
118 3sb4_A Hypothetical leucine ri 99.7 3.9E-17 1.3E-21 152.6 8.3 290 27-353 24-327 (329)
119 2wfh_A SLIT homolog 2 protein 99.7 9.6E-16 3.3E-20 131.0 13.5 129 303-458 13-142 (193)
120 1w8a_A SLIT protein; signaling 99.7 1.1E-15 3.6E-20 130.8 13.5 173 279-458 11-186 (192)
121 4fs7_A Uncharacterized protein 99.6 2.1E-14 7.4E-19 137.5 22.2 335 40-424 59-393 (394)
122 2ell_A Acidic leucine-rich nuc 99.6 8.1E-16 2.8E-20 128.7 10.7 135 299-436 23-163 (168)
123 1dce_A Protein (RAB geranylger 99.6 2.3E-18 7.9E-23 171.7 -6.6 194 249-448 346-566 (567)
124 2ell_A Acidic leucine-rich nuc 99.6 2.7E-15 9.2E-20 125.5 12.8 137 26-165 22-163 (168)
125 3sb4_A Hypothetical leucine ri 99.6 1.4E-15 4.8E-20 142.0 11.8 259 177-447 24-326 (329)
126 2o6r_A Variable lymphocyte rec 99.6 2.9E-15 9.8E-20 126.5 11.3 129 302-432 9-137 (177)
127 1dce_A Protein (RAB geranylger 99.6 4.8E-18 1.6E-22 169.4 -7.4 197 225-426 346-567 (567)
128 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.3E-20 123.8 9.1 127 299-427 16-148 (149)
129 2je0_A Acidic leucine-rich nuc 99.6 4.2E-15 1.4E-19 121.6 11.2 128 27-157 16-148 (149)
130 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 122.9 13.8 135 325-462 9-144 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 1.7E-14 5.7E-19 123.3 14.7 127 279-408 13-139 (193)
132 4fs7_A Uncharacterized protein 99.6 1.3E-13 4.6E-18 131.9 22.4 319 63-429 58-376 (394)
133 4fdw_A Leucine rich hypothetic 99.6 3.2E-13 1.1E-17 128.8 21.9 263 27-334 112-381 (401)
134 1a9n_A U2A', U2A'; complex (nu 99.6 8.8E-15 3E-19 123.3 9.2 133 296-432 15-153 (176)
135 4fdw_A Leucine rich hypothetic 99.6 5.4E-13 1.8E-17 127.1 22.1 200 224-431 176-382 (401)
136 4b8c_D Glucose-repressible alc 99.5 1.7E-15 6E-20 155.7 4.8 219 228-458 173-406 (727)
137 4b8c_D Glucose-repressible alc 99.5 2.9E-15 1E-19 154.1 4.4 153 220-381 216-369 (727)
138 1a9n_A U2A', U2A'; complex (nu 99.5 5.9E-14 2E-18 118.2 11.0 135 23-163 14-154 (176)
139 4gt6_A Cell surface protein; l 99.5 5.3E-12 1.8E-16 120.8 24.1 132 269-407 258-390 (394)
140 3g39_A Variable lymphocyte rec 99.5 9.6E-14 3.3E-18 115.9 9.9 109 350-461 12-121 (170)
141 4gt6_A Cell surface protein; l 99.5 1.5E-11 5.2E-16 117.6 24.8 335 41-431 52-390 (394)
142 2r9u_A Variable lymphocyte rec 99.5 2.7E-13 9.2E-18 113.6 10.1 109 350-461 15-124 (174)
143 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6.1E-20 130.2 -7.8 63 272-336 44-106 (198)
144 1ds9_A Outer arm dynein; leuci 99.4 1.3E-15 4.5E-20 131.1 -9.1 111 295-409 43-154 (198)
145 3g39_A Variable lymphocyte rec 99.4 4.2E-12 1.4E-16 105.9 12.3 106 301-408 10-115 (170)
146 2r9u_A Variable lymphocyte rec 99.4 9.3E-12 3.2E-16 104.1 13.0 104 303-408 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 1E-13 3.4E-18 130.9 -1.4 159 252-410 72-254 (372)
148 4h09_A Hypothetical leucine ri 99.3 1.6E-09 5.4E-14 103.1 25.6 146 247-397 212-358 (379)
149 3un9_A NLR family member X1; l 99.2 1.1E-12 3.6E-17 123.9 -0.6 111 52-162 72-196 (372)
150 2ifg_A High affinity nerve gro 99.2 4.6E-11 1.6E-15 112.3 10.5 104 327-433 12-117 (347)
151 4h09_A Hypothetical leucine ri 99.2 4.6E-09 1.6E-13 99.9 24.5 163 251-419 193-356 (379)
152 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.6E-15 109.9 11.2 102 305-408 13-116 (347)
153 2ra8_A Uncharacterized protein 99.0 2.7E-10 9.1E-15 106.5 5.0 84 346-430 251-341 (362)
154 2ra8_A Uncharacterized protein 98.9 5E-10 1.7E-14 104.7 4.0 135 296-432 168-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 1.8E-08 6.3E-13 84.9 1.8 117 295-431 31-163 (185)
156 3e4g_A ATP synthase subunit S, 98.5 1.9E-08 6.6E-13 82.4 0.7 84 323-406 61-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 6.8E-08 2.3E-12 81.4 3.3 16 74-89 63-78 (185)
158 3e4g_A ATP synthase subunit S, 98.5 1E-07 3.5E-12 78.1 4.2 85 51-135 60-149 (176)
159 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.8E-11 76.1 4.4 83 49-132 167-258 (267)
160 3rw6_A Nuclear RNA export fact 98.1 5.4E-06 1.9E-10 73.3 6.6 108 48-157 137-259 (267)
161 3rfe_A Platelet glycoprotein I 97.8 1.8E-05 6E-10 61.9 4.4 58 399-459 12-72 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 3.1E-05 1E-09 64.7 1.7 40 297-336 38-83 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 5.3E-05 1.8E-09 63.2 2.0 86 345-430 68-168 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.00086 2.9E-08 52.1 5.2 53 9-63 12-66 (130)
165 2lz0_A Uncharacterized protein 81.9 1.7 5.9E-05 31.4 4.3 48 38-86 6-53 (100)
166 2lz0_A Uncharacterized protein 75.3 6.5 0.00022 28.3 5.7 39 365-404 14-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-53 Score=443.88 Aligned_cols=449 Identities=32% Similarity=0.501 Sum_probs=321.1
Q ss_pred ccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCc
Q 038605 24 FGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNL 103 (485)
Q Consensus 24 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 103 (485)
++++++|++|++++|.+++.+|..+.++++|++|++++|.+++..|.. .+++|++|++++|.+.+..+......+++|
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 666666666666666666555555666666666666666655444433 556666666666665544444444334677
Q ss_pred cEEEccCcccccccchhhhcCCCCcEEEccCcccccccchh-ccCCCCCcEEEccCCccccCCCCccccccccC------
Q 038605 104 EELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNT-FGNLRNLERLNLQDNYLTSSTPELSFLSSLSN------ 176 (485)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~------ 176 (485)
++|++++|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+.. +..+..
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~~L~ 371 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL-----PESLTNLSASLL 371 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC-----CTTHHHHTTTCS
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc-----cHHHHhhhcCCc
Confidence 77777777776666777777777777777777766555543 667777777777777665331 122222
Q ss_pred ---------------------CCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEc
Q 038605 177 ---------------------CKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINL 235 (485)
Q Consensus 177 ---------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 235 (485)
+++|+.|++++|.+.+..+ ..+..+ ++|+.|++++|.+....+..+..+++|++|++
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC-GGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC-HHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 3345555555544433222 223333 56777777777776666777777777777777
Q ss_pred CCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC-
Q 038605 236 GGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS- 314 (485)
Q Consensus 236 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~- 314 (485)
++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 7777777777777777888888888888877777788888888888888888877777778888888888888888874
Q ss_pred CCccccCCCCCcEEEccCCcCCCCCCcc----------------------------------------------------
Q 038605 315 IPLTFWNLKDILQLNISSNYFTGPLPLE---------------------------------------------------- 342 (485)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~---------------------------------------------------- 342 (485)
+|..+..+++|+.|++++|++.+..+..
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 7777888888888888888776544432
Q ss_pred ------------------ccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCC
Q 038605 343 ------------------IGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSN 404 (485)
Q Consensus 343 ------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 404 (485)
+..++.|+.|++++|.+++.+|..++.++.|+.|++++|.+++.+|..++.+++|+.|++++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 22346788999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCCCCCCccccCCccccCCccccccCcc
Q 038605 405 NNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPNLQYYINDSSHFVDPKISTERKTT 483 (485)
Q Consensus 405 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~ 483 (485)
|++++.+|..+..+++|++|++++|+++|.+|..+.+..+...++.|||.+||.|.. -+.......|+++++.+..+
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CCCSCC--------------
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc--CCCCCccCCCCCCCCccccC
Confidence 999999999999999999999999999999999999999999999999999998754 45566667888888776543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-49 Score=415.38 Aligned_cols=428 Identities=35% Similarity=0.560 Sum_probs=363.5
Q ss_pred cCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCcc
Q 038605 25 GNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLE 104 (485)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 104 (485)
..+++|++|++++|.+++.+|. +.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCC
Confidence 6778888888888888766665 888888888888888888777788888888888888888887655544 488899
Q ss_pred EEEccCcccccccchhhhcC-CCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccc-cccCCCCCCE
Q 038605 105 ELSLWGNNFNGTIPRFIFNA-SKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLS-SLSNCKSLTL 182 (485)
Q Consensus 105 ~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~~~~L~~ 182 (485)
+|++++|.+.+.+|..+... ++|++|++++|.+.+..|..|+.+++|++|++++|.+.+. .+. .+..+++|+.
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----ip~~~l~~l~~L~~ 347 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-----LPMDTLLKMRGLKV 347 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-----CCHHHHTTCTTCCE
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-----CCHHHHhcCCCCCE
Confidence 99999998887888877765 9999999999999988899999999999999999988743 222 3788999999
Q ss_pred EEccCCCCCCcCCccccccc--------------------------cccccEEEcccccCCcCcchhhhcCCCCCEEEcC
Q 038605 183 IALSNNPLDGNLRKTSVGNL--------------------------SHSLEIFLMYNCNISGGISEEISNLTNLTTINLG 236 (485)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 236 (485)
|++++|.+.+..+. .+..+ .++++.|++.+|.+....+..+..+++|++|+++
T Consensus 348 L~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 348 LDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EeCcCCccCccccH-HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 99999987644331 12222 2456777777777766777788888999999999
Q ss_pred CCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC-C
Q 038605 237 GNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS-I 315 (485)
Q Consensus 237 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~ 315 (485)
+|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++. +
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 999888888888899999999999999998889899999999999999999988888889999999999999999985 8
Q ss_pred CccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCccc-----------------------------
Q 038605 316 PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTE----------------------------- 366 (485)
Q Consensus 316 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------------------- 366 (485)
|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.+|..
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 888889999999999999999888889999999999999999887655543
Q ss_pred -----------------------------------------ccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCC
Q 038605 367 -----------------------------------------IGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNN 405 (485)
Q Consensus 367 -----------------------------------------~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 405 (485)
+..+++|+.|++++|++++.+|..++.+++|+.|++++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 334578999999999999999999999999999999999
Q ss_pred cccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCC-CCCCc
Q 038605 406 NLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGS-PNLQY 463 (485)
Q Consensus 406 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~-p~~~~ 463 (485)
.+++.+|..++.+++|+.|++++|++++.+|.. ..++.|+.|++++|+ +.|. |....
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~-l~g~iP~~~~ 725 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN-LSGPIPEMGQ 725 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE-EEEECCSSSS
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc-ccccCCCchh
Confidence 999999999999999999999999999999976 889999999999998 5665 66543
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.4e-49 Score=400.84 Aligned_cols=446 Identities=22% Similarity=0.224 Sum_probs=307.8
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
..++|.+..++++|..+.. ++++|++++|.+++..|..|.++++|++|++++|.+++..|.+|.++++|++|++++|.
T Consensus 15 ~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 3466666677777765533 45555555555554445555555555555555555555555555555555555555555
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhc------------------------CCCCcEEEccCcccccccch
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFN------------------------ASKLSILELVGNSFSGFIPN 143 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------------------------l~~L~~L~l~~~~~~~~~~~ 143 (485)
+....+..+. .+++|++|++++|.+.+..+..+.. +++|++|++++|.+.+..+.
T Consensus 93 l~~~~~~~~~-~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 93 LIFMAETALS-GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CSEECTTTTS-SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred ccccChhhhc-ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 5433332222 2444555555444444332333444 45555555555555544445
Q ss_pred hccCCCCCc--EEEccCCccccCCCCcc----------------------------------------------------
Q 038605 144 TFGNLRNLE--RLNLQDNYLTSSTPELS---------------------------------------------------- 169 (485)
Q Consensus 144 ~~~~l~~L~--~L~l~~~~~~~~~~~~~---------------------------------------------------- 169 (485)
.++.+++|+ .|++++|.+....+...
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 555555555 55555555443322110
Q ss_pred ------------------ccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCC
Q 038605 170 ------------------FLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLT 231 (485)
Q Consensus 170 ------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 231 (485)
....+..+++|+.|++++|.+.. .+ ..+..+ ++|+.|++.+|.+....+..+..+++|+
T Consensus 252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp-~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LP-SGLVGL-STLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-CC-SSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-CC-hhhccc-ccCCEEECccCCcCcCchhhhhccCcCC
Confidence 00114556667777777766652 22 223333 5677777777777766666677777777
Q ss_pred EEEcCCCcCCCCcc-ccccCCCCCCeEeccCccCCCCC--CcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCC
Q 038605 232 TINLGGNKLNGSIP-IALGKLQKLQYLGLEDNKLEGSI--PDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLG 308 (485)
Q Consensus 232 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (485)
+|++++|.+.+..+ ..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 408 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence 77777777664443 34677788888888888877554 5677888888888888888877777788888999999999
Q ss_pred CCcCCCC-C-ccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCccccc---CcccccCCCCCCEEECCCCcc
Q 038605 309 SNELTSI-P-LTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGV---IPTEIGGLKNLEYLFLGYNRL 383 (485)
Q Consensus 309 ~~~l~~~-~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~l 383 (485)
+|.+... + ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+
T Consensus 409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence 9988764 2 3477889999999999999888788888999999999999998762 235688899999999999999
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCCC
Q 038605 384 RGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPN 460 (485)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p~ 460 (485)
++..+..+..+++|++|++++|++.+..+..+..+++| +|++++|++++..|.. ..+++|+.+++++|||.|+|+.
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 98888899999999999999999998899999999999 9999999999766654 7789999999999999999964
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-47 Score=391.00 Aligned_cols=443 Identities=22% Similarity=0.224 Sum_probs=333.2
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
..++|.+..++.+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 458888899999998875 789999999999987777788999999999999999988888889999999999999998
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCccccc-ccchhccCCCCCcEEEccCCccccCCC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSG-FIPNTFGNLRNLERLNLQDNYLTSSTP 166 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~ 166 (485)
+....+..+. .+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..++++++|++|++++|.+....+
T Consensus 92 l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 92 IQSFSPGSFS-GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCCTTSST-TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred ccccChhhcC-CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 8876555544 48999999999998876666778888999999999988875 457788889999999998888776533
Q ss_pred Cc-cc---------------------cccccCCCCCCEEEccCCCCCCcC------------------------------
Q 038605 167 EL-SF---------------------LSSLSNCKSLTLIALSNNPLDGNL------------------------------ 194 (485)
Q Consensus 167 ~~-~~---------------------~~~l~~~~~L~~L~l~~~~~~~~~------------------------------ 194 (485)
.. .. +.......+|+.+++++|.+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 21 00 000111124555555555332000
Q ss_pred ------------------------C--ccccccccccccEEEcccccCCcCcchhhh---------------------cC
Q 038605 195 ------------------------R--KTSVGNLSHSLEIFLMYNCNISGGISEEIS---------------------NL 227 (485)
Q Consensus 195 ------------------------~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---------------------~~ 227 (485)
. ...+. ..++++.+++.++.+.. ++ .+. .+
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp~~~l 327 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH-CLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFPTLDL 327 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCG-GGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCCCCCC
T ss_pred ChHHhhhhhhccHhheeccccccccccccccc-cCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCcccccCCC
Confidence 0 00001 11344555555444432 12 334 44
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCC--CCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEE
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGS--IPDDICRLDELYELELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
++|++|++++|...+ ...+..+++|++|++++|.+++. .+..+..+++|++|++++|.+.. .+..+..+++|+.|
T Consensus 328 ~~L~~L~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404 (606)
T ss_dssp SSCCEEEEESCSSCE--ECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred CccceeeccCCcCcc--chhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence 555555555553321 11344566777777777766544 25666777888888888887664 34677888889999
Q ss_pred eCCCCcCCCCC--ccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccc-cCcccccCCCCCCEEECCCCc
Q 038605 306 SLGSNELTSIP--LTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSG-VIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 306 ~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 382 (485)
++++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|+
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc
Confidence 99998888754 367788999999999999988788888899999999999999987 367889999999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCC-CCCcccccCCCCccCCCC
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFG-NFSAESFEGNELLCGSPN 460 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~-~L~~l~l~~np~~c~~p~ 460 (485)
+++..+..+..+++|++|++++|++.+..|..+..+++|++|++++|+++ .+|.. ..++ +|+.+++++|||.|+|+.
T Consensus 485 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 99888889999999999999999999888999999999999999999998 56654 5665 699999999999999975
No 5
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-47 Score=386.86 Aligned_cols=441 Identities=23% Similarity=0.252 Sum_probs=343.7
Q ss_pred ccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcc
Q 038605 9 SDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSL 88 (485)
Q Consensus 9 ~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 88 (485)
.++|.+..++++|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEEeCCCCccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 47888889999998774 5899999999999988888899999999999999999988888999999999999999998
Q ss_pred ccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccc-cchhccCCCCCcEEEccCCccccCCCC
Q 038605 89 LGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGF-IPNTFGNLRNLERLNLQDNYLTSSTPE 167 (485)
Q Consensus 89 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~ 167 (485)
....+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+. .|..|+++++|++|++++|.+....
T Consensus 89 ~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~-- 165 (570)
T 2z63_A 89 QSLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-- 165 (570)
T ss_dssp CEECTTTTT-TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC--
T ss_pred CccCHhhhc-CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec--
Confidence 876555444 599999999999998855555688999999999999988863 5788999999999999999887653
Q ss_pred ccccccccCCCCC----CEEEccCCCCCCcCCccccccccccccEEEcccc-----------------------------
Q 038605 168 LSFLSSLSNCKSL----TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNC----------------------------- 214 (485)
Q Consensus 168 ~~~~~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------------- 214 (485)
+..+..+++| +.+++++|.+....+ ..+.. ..++.+++.++
T Consensus 166 ---~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 166 ---CTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp ---GGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTT--CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ---HHHccchhccchhhhhcccCCCCceecCH-HHhcc--CcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 2345555555 677777776543222 11111 12333333222
Q ss_pred -----------------------------cCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccC---------------
Q 038605 215 -----------------------------NISGGISEEISNLTNLTTINLGGNKLNGSIPIALGK--------------- 250 (485)
Q Consensus 215 -----------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~--------------- 250 (485)
.+....+..+..+++|++|+++++.+. ..+..+..
T Consensus 240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~ 318 (570)
T 2z63_A 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQ 318 (570)
T ss_dssp CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSS
T ss_pred chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccc
Confidence 112222333444555555555555554 23333433
Q ss_pred -----CCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccc--cccccCCCCCcEEeCCCCcCCCCCccccCCC
Q 038605 251 -----LQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSI--PACFGNLIALRILSLGSNELTSIPLTFWNLK 323 (485)
Q Consensus 251 -----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 323 (485)
+++|++|++++|.+....+. ..+++|+.|++++|.+.... +..+..+++|+.|++++|.+..++..+..++
T Consensus 319 l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~ 396 (570)
T 2z63_A 319 FPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396 (570)
T ss_dssp CCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCT
T ss_pred cCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccC
Confidence 44455555555544433222 56788999999998877543 5667889999999999999998877788899
Q ss_pred CCcEEEccCCcCCCCCC-ccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccc-ccCCccccCCCCCCEEe
Q 038605 324 DILQLNISSNYFTGPLP-LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR-GSIPDSFGDLISLKFLN 401 (485)
Q Consensus 324 ~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~ 401 (485)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +..|..+..+++|+.|+
T Consensus 397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~ 476 (570)
T 2z63_A 397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476 (570)
T ss_dssp TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence 99999999999887654 46789999999999999999888889999999999999999997 46788999999999999
Q ss_pred CCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCCCCCc
Q 038605 402 LSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLQY 463 (485)
Q Consensus 402 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p~~~~ 463 (485)
+++|++.+..|..+..+++|++|++++|++++..|.. ..+++|+.+++++||+.|+||...+
T Consensus 477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 9999999888999999999999999999998766653 8899999999999999999987644
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-46 Score=382.80 Aligned_cols=413 Identities=22% Similarity=0.214 Sum_probs=303.3
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccC
Q 038605 31 EQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWG 110 (485)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (485)
+.++.++..++ .+|..+.. ++++|++++|.+++..+..|.++++|++|++++|.+....+..+. .+++|++|++++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ-SQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT-TCTTCCEEECTT
T ss_pred ceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc-CccccCeeeCCC
Confidence 57788888887 66766643 799999999999999899999999999999999999876565554 599999999999
Q ss_pred cccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCC
Q 038605 111 NNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPL 190 (485)
Q Consensus 111 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 190 (485)
|.+.+..|..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+..... ..+..+++|+.|++++|.+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-----PKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-----CTTCCCTTCCEEECCSSCC
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-----ccccCCcccCEEEcccCcc
Confidence 99987888899999999999999999998777889999999999999999887532 1223355666666665554
Q ss_pred CCcCCccccccc--------------------------------------------------------------------
Q 038605 191 DGNLRKTSVGNL-------------------------------------------------------------------- 202 (485)
Q Consensus 191 ~~~~~~~~~~~~-------------------------------------------------------------------- 202 (485)
....+ ..+..+
T Consensus 166 ~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 166 HYLSK-EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp CEECH-HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred cccCh-hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 32111 001111
Q ss_pred --------cccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCC
Q 038605 203 --------SHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICR 274 (485)
Q Consensus 203 --------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 274 (485)
...++.+++.++.+....+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 014566666666666655666777788888888888877 56667777888888888888877666667777
Q ss_pred CCCCCEEEccCCcCcccc-cccccCCCCCcEEeCCCCcCCCC---CccccCCCCCcEEEccCCcCCCCCCccccCCCCCC
Q 038605 275 LDELYELELGGNKLSGSI-PACFGNLIALRILSLGSNELTSI---PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLI 350 (485)
Q Consensus 275 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 350 (485)
+++|++|++++|.+.... ...+..+++|+.|++++|.++.+ +..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 778888888877765333 33467777788888877777764 45566777777788777777766666677777777
Q ss_pred eEEccCCcccccCc-ccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCccccc---CcccccCCCCCCceeC
Q 038605 351 GIDFSMNNFSGVIP-TEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGA---IPASLEKLSYLEDLNL 426 (485)
Q Consensus 351 ~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~~l~~L~~L~l 426 (485)
+|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|++.+. .+..+..+++|++|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 77777777765543 3366777777777777777766666677777777777777776642 2245667777777777
Q ss_pred CCCcccccCCCC-CCCCCCCcccccCCCC
Q 038605 427 SFNKLEGEIPRG-GSFGNFSAESFEGNEL 454 (485)
Q Consensus 427 ~~n~~~~~~p~~-~~~~~L~~l~l~~np~ 454 (485)
++|++.+..|.. ..+++|+.|++++|..
T Consensus 484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCccChhhhccccCCCEEECCCCcc
Confidence 777777665543 6677777777777763
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-46 Score=388.11 Aligned_cols=445 Identities=23% Similarity=0.259 Sum_probs=276.3
Q ss_pred cccccCCChh-ccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcccccc
Q 038605 14 TFQLGEIPRE-FGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCL 92 (485)
Q Consensus 14 ~~~~~~lp~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~ 92 (485)
++.+..+|.. |..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+....
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 3444455542 555555555555555555444445555555555555555555555555555555666666555554433
Q ss_pred chhhh-hcCCCccEEEccCcccccccchhhhcC---------------------------CCCcEEEccCcccccccchh
Q 038605 93 SSIAD-VRLPNLEELSLWGNNFNGTIPRFIFNA---------------------------SKLSILELVGNSFSGFIPNT 144 (485)
Q Consensus 93 ~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~ 144 (485)
+.... ..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 32211 123555555555555443333222211 22333333333333333333
Q ss_pred ccCCCC--CcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCC---------------------------
Q 038605 145 FGNLRN--LERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLR--------------------------- 195 (485)
Q Consensus 145 ~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--------------------------- 195 (485)
+..++. |+.|++++|.+.... +..+..+++|+.|++++|.+.+..+
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 316 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVG-----NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEEC-----TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred hhccCcCCCCEEECCCCCcCccC-----cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence 333322 555555555444332 1223444444444444443322111
Q ss_pred -----ccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCc----------------------------CCC
Q 038605 196 -----KTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNK----------------------------LNG 242 (485)
Q Consensus 196 -----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~----------------------------~~~ 242 (485)
...+..+ ++|+.|++.+|.+....+..+..+++|++|++++|. +.+
T Consensus 317 lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~ 395 (680)
T 1ziw_A 317 LPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395 (680)
T ss_dssp CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred ccccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence 0012222 566777777776666555556666666666665543 333
Q ss_pred CccccccCCCCCCeEeccCccCCCCCC-cccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCC---CCCcc
Q 038605 243 SIPIALGKLQKLQYLGLEDNKLEGSIP-DDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELT---SIPLT 318 (485)
Q Consensus 243 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~ 318 (485)
..+..+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+....+..+..+++|+.|++++|.+. .+|..
T Consensus 396 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence 334445556666666666666654333 45666666666666666666555566667777777777777664 35677
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCc--------ccccCCCCCCEEECCCCcccccCCcc
Q 038605 319 FWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIP--------TEIGGLKNLEYLFLGYNRLRGSIPDS 390 (485)
Q Consensus 319 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~l~~L~~L~l~~~~l~~~~~~~ 390 (485)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+... ..+.++++|++|++++|++....+..
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 555 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 8888999999999999988777788899999999999998876422 23788899999999999998555567
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-C-CCCCCCcccccCCCCccCCCCCCcc
Q 038605 391 FGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-G-SFGNFSAESFEGNELLCGSPNLQYY 464 (485)
Q Consensus 391 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~-~~~~L~~l~l~~np~~c~~p~~~~~ 464 (485)
|..+++|+.|++++|+++...+..+..+++|++|++++|++++..|.. . .+++|+.+++++|||.|+|+...|+
T Consensus 556 ~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~ 631 (680)
T 1ziw_A 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSE
T ss_pred cccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHH
Confidence 899999999999999999766677889999999999999998655543 3 6899999999999999999864444
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-46 Score=391.24 Aligned_cols=450 Identities=22% Similarity=0.230 Sum_probs=321.1
Q ss_pred ccc-ccccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCcc-ceecCCccccCCCCCCEE
Q 038605 4 CFR-RTSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNK-LVGIVPAAIFNVSTLKLL 81 (485)
Q Consensus 4 ~~~-~~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~~~~~~l~~l~~L~~L 81 (485)
|.. ...++|....++.+|. + .+++++|+|++|.+++..+..|.++++|++|++++|. +..+.+.+|.++++|++|
T Consensus 2 C~~~~~~~dcs~~~L~~vP~-l--p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 2 CSFDGRIAFYRFCNLTQVPQ-V--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp CBTTTEEEEESCCCSSCCCS-S--CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred ceEeceEEEccCCCCCCCCC-C--CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 433 3468888888999998 4 5789999999999987778888899999999998884 444457788889999999
Q ss_pred EccCCccccccchhhhhcCCCccEEEccCcccccccchh--hhcCCCCcEEEccCcccccccc-hhccCCCCCcEEEccC
Q 038605 82 QLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRF--IFNASKLSILELVGNSFSGFIP-NTFGNLRNLERLNLQD 158 (485)
Q Consensus 82 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 158 (485)
+|++|.+....+..+. .+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+ ..|+++++|++|++++
T Consensus 79 ~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQ-GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp ECTTCCCCEECTTSSC-SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred ECCCCcCcccCHhHcc-CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 9998888766555554 4888999999888887655544 7788888999998888876544 5688888888888888
Q ss_pred CccccCCCCcc---------------------ccccccCCC------CCCEEEccCCCCCCcCCccc-------------
Q 038605 159 NYLTSSTPELS---------------------FLSSLSNCK------SLTLIALSNNPLDGNLRKTS------------- 198 (485)
Q Consensus 159 ~~~~~~~~~~~---------------------~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~------------- 198 (485)
|.+....+..- .+..+..+. +|+.|++++|.+........
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 87765432210 011122222 27777777775543222111
Q ss_pred ----------------------ccc-ccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCC
Q 038605 199 ----------------------VGN-LSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQ 255 (485)
Q Consensus 199 ----------------------~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 255 (485)
+.. .+++++.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 001 125678888888877766667777788888888888888766666777788888
Q ss_pred eEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc------------------
Q 038605 256 YLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL------------------ 317 (485)
Q Consensus 256 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~------------------ 317 (485)
+|++++|.+++..+..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++.++.
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 88888888877777778888888888888887776666667777777777777777665432
Q ss_pred -----------------------cccCCCCCcEEEccCCcCCCCCCc-cccCCCCCCeEEccCCcccc-----cCccccc
Q 038605 318 -----------------------TFWNLKDILQLNISSNYFTGPLPL-EIGNLKVLIGIDFSMNNFSG-----VIPTEIG 368 (485)
Q Consensus 318 -----------------------~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~ 368 (485)
.+..+++|+.|++++|++.+.... .+..+++|++|++++|.+.. ..+..|.
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 011345555555555555533221 23345666666666666542 2234567
Q ss_pred CCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCccc
Q 038605 369 GLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAES 448 (485)
Q Consensus 369 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~ 448 (485)
++++|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+. ++|+.|++++|++++..|. .+++|+.++
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~ 553 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLD 553 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEE
Confidence 778888888888888877777788888888888888888765555554 7888888888888877664 467999999
Q ss_pred ccCCCCccCCCCC
Q 038605 449 FEGNELLCGSPNL 461 (485)
Q Consensus 449 l~~np~~c~~p~~ 461 (485)
+++|||.|+|+..
T Consensus 554 l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 554 ITHNKFICECELS 566 (844)
T ss_dssp EEEECCCCSSSCC
T ss_pred ecCCCcccccccH
Confidence 9999999999653
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.8e-44 Score=368.57 Aligned_cols=440 Identities=25% Similarity=0.281 Sum_probs=273.7
Q ss_pred ccccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 7 RTSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
...++|.+..++++|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 3458888899999998875 79999999999999777777999999999999999999888888999999999999999
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCC
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTP 166 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 166 (485)
.+.......+ ..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+
T Consensus 84 ~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 84 ELSQLSDKTF-AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCCTTTT-TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred ccCccChhhh-ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 8876544333 358999999999999886666788899999999999999888878888889999999999988776532
Q ss_pred CccccccccCCCCCCEEEccCCCCCCcCCccccccc--------------------------cccccEEEcccccCCcCc
Q 038605 167 ELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNL--------------------------SHSLEIFLMYNCNISGGI 220 (485)
Q Consensus 167 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~--------------------------~~~L~~L~l~~~~~~~~~ 220 (485)
.. -.+..+++|+.|++++|.+.+..+ ..+..+ .+.++.|+++++.+....
T Consensus 163 ~~---~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~ 238 (680)
T 1ziw_A 163 EE---LDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238 (680)
T ss_dssp HH---HGGGTTCEESEEECTTCCCCCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC
T ss_pred HH---hhccccccccEEECCCCcccccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC
Confidence 10 012245677777777776654322 111110 033445555555444444
Q ss_pred chhhhcCCC--CCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCc----------------------------
Q 038605 221 SEEISNLTN--LTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPD---------------------------- 270 (485)
Q Consensus 221 ~~~l~~~~~--L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---------------------------- 270 (485)
+..+..++. |++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 239 ~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp 318 (680)
T 1ziw_A 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318 (680)
T ss_dssp TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CC
T ss_pred hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccc
Confidence 444444322 55555555555444444444455555555555544433333
Q ss_pred -----ccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC--CCc-ccc--CCCCCcEEEccCCcCCCCCC
Q 038605 271 -----DICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS--IPL-TFW--NLKDILQLNISSNYFTGPLP 340 (485)
Q Consensus 271 -----~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~-~~~--~~~~L~~L~l~~~~l~~~~~ 340 (485)
.+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.. ++. .+. ..++|+.|++++|++.+..+
T Consensus 319 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~ 398 (680)
T 1ziw_A 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT
T ss_pred ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh
Confidence 34455666666666666655555556666666666665553211 111 000 01233444444444443334
Q ss_pred ccccCCCCCCeEEccCCcccccCc-ccccCCCCCCEEECCCCcccc--------------------------cCCccccC
Q 038605 341 LEIGNLKVLIGIDFSMNNFSGVIP-TEIGGLKNLEYLFLGYNRLRG--------------------------SIPDSFGD 393 (485)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~--------------------------~~~~~~~~ 393 (485)
..+..+++|++|++++|.+.+.++ ..+.++++|++|++++|++.. ..|..+..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 444455555555555555543322 344444455555554444433 34455566
Q ss_pred CCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccccc----CC-----CCCCCCCCCcccccCCC
Q 038605 394 LISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGE----IP-----RGGSFGNFSAESFEGNE 453 (485)
Q Consensus 394 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~----~p-----~~~~~~~L~~l~l~~np 453 (485)
+++|+.|++++|.+.+..+..+..+++|++|++++|++.+. +| ....+++|+.|++++|.
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 66666666666666655555566666666666666666532 11 12556666677777665
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1e-44 Score=365.56 Aligned_cols=440 Identities=22% Similarity=0.257 Sum_probs=327.1
Q ss_pred cccccccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEc
Q 038605 4 CFRRTSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQL 83 (485)
Q Consensus 4 ~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L 83 (485)
|......++..+.++++|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..+.+|.++++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3333334555678999999874 79999999999999888889999999999999999999888899999999999999
Q ss_pred cCCccccccchhhhhcCCCccEEEccCccccc-ccchhhhcCCCCcEEEccCcc-cccccchhccCCCCCcEEEccCCcc
Q 038605 84 QNNSLLGCLSSIADVRLPNLEELSLWGNNFNG-TIPRFIFNASKLSILELVGNS-FSGFIPNTFGNLRNLERLNLQDNYL 161 (485)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 161 (485)
++|.+.+..+..+. .+++|++|++++|.+.+ ..+..+.++++|++|++++|. +....+..+.++++|++|++++|.+
T Consensus 82 s~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 82 SDNHLSSLSSSWFG-PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTSCCCSCCHHHHT-TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCccCccCHHHhc-cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999876655444 59999999999999875 356778899999999999997 4544446789999999999999988
Q ss_pred ccCCCCccccccccCC------------------------CCCCEEEccCCCCCCcC-CccccccccccccEEEcccccC
Q 038605 162 TSSTPELSFLSSLSNC------------------------KSLTLIALSNNPLDGNL-RKTSVGNLSHSLEIFLMYNCNI 216 (485)
Q Consensus 162 ~~~~~~~~~~~~l~~~------------------------~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 216 (485)
....+ ..+..+ ++|+.|++++|.+.+.. ....+....+.++.|++.++.+
T Consensus 161 ~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 161 RNYQS-----QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp CEECT-----TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred cccCh-----hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 76522 234444 45555555555544321 0011122224455555555544
Q ss_pred CcCcc----hhhhcCCCCCEEEcCCCcCCCCc-----------------------------------cccccCCCCCCeE
Q 038605 217 SGGIS----EEISNLTNLTTINLGGNKLNGSI-----------------------------------PIALGKLQKLQYL 257 (485)
Q Consensus 217 ~~~~~----~~l~~~~~L~~L~l~~~~~~~~~-----------------------------------~~~l~~~~~L~~L 257 (485)
....+ ..+..+++|+.+++++|.+.+.. +..+....+|++|
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 33222 12244556666666666543210 0001123567778
Q ss_pred eccCccCCCCCCccc-CCCCCCCEEEccCCcCccccc---ccccCCCCCcEEeCCCCcCCCCCc---cccCCCCCcEEEc
Q 038605 258 GLEDNKLEGSIPDDI-CRLDELYELELGGNKLSGSIP---ACFGNLIALRILSLGSNELTSIPL---TFWNLKDILQLNI 330 (485)
Q Consensus 258 ~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~L~~L~l 330 (485)
++++|.+. ..|..+ ..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.++.++. .+..+++|++|++
T Consensus 316 ~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 316 TVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp EEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred EeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 88887776 455544 578899999999998876543 336788999999999999988653 4678899999999
Q ss_pred cCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 038605 331 SSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGA 410 (485)
Q Consensus 331 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 410 (485)
++|++. ..+..+..+++|++|++++|.+... +..+ .++|++|++++|++++. +..+++|++|++++|++. .
T Consensus 395 s~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ 465 (549)
T 2z81_A 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-T 465 (549)
T ss_dssp TTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-S
T ss_pred CCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-c
Confidence 999888 4566777889999999999998743 3322 26899999999998743 357899999999999998 5
Q ss_pred CcccccCCCCCCceeCCCCcccccCCC-CCCCCCCCcccccCCCCccCCCCCC
Q 038605 411 IPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGSPNLQ 462 (485)
Q Consensus 411 ~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~L~~l~l~~np~~c~~p~~~ 462 (485)
+|. ...+++|++|++++|++++..|. ...+++|+.+++++|||.|+||...
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 517 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 517 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHH
T ss_pred CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHH
Confidence 665 46799999999999999977776 4889999999999999999998543
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-44 Score=363.93 Aligned_cols=348 Identities=20% Similarity=0.277 Sum_probs=160.7
Q ss_pred CCccccCCCCCCEEEccCCccccc-----------------cchhhh-hcCCCccEEEccCcccccccchhhhcCCCCcE
Q 038605 68 VPAAIFNVSTLKLLQLQNNSLLGC-----------------LSSIAD-VRLPNLEELSLWGNNFNGTIPRFIFNASKLSI 129 (485)
Q Consensus 68 ~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (485)
+|..+.++++|++|++++|.+.+. .+.... .++++|++|++++|.+.+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 444555555555555555555541 222221 13555555555555555555555555555555
Q ss_pred EEccCcc-ccc-ccchhccCC------CCCcEEEccCCccccCCCCccccc--cccCCCCCCEEEccCCCCCCcCCcccc
Q 038605 130 LELVGNS-FSG-FIPNTFGNL------RNLERLNLQDNYLTSSTPELSFLS--SLSNCKSLTLIALSNNPLDGNLRKTSV 199 (485)
Q Consensus 130 L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~ 199 (485)
|++++|. +++ ..|..+..+ ++|++|++++|.+.. .+. .+..+++|+.|++++|.+.+..+ .+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~------ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~ 349 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT------FPVETSLQKMKKLGMLECLYNQLEGKLP--AF 349 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS------CCCHHHHTTCTTCCEEECCSCCCEEECC--CC
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc------cCchhhhccCCCCCEEeCcCCcCccchh--hh
Confidence 5555554 554 444444443 555555555555542 222 34555555555555555543333 22
Q ss_pred ccccccccEEEcccccCCcCcchhhhcCCC-CCEEEcCCCcCCCCccccccCCC--CCCeEeccCccCCCCCCcccC---
Q 038605 200 GNLSHSLEIFLMYNCNISGGISEEISNLTN-LTTINLGGNKLNGSIPIALGKLQ--KLQYLGLEDNKLEGSIPDDIC--- 273 (485)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~--- 273 (485)
..+ ++|+.|++++|.+. .++..+..+++ |++|++++|.+. .+|..+.... +|++|++++|.+++..|..+.
T Consensus 350 ~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 350 GSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred CCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 222 44555555555444 33444444444 555555555544 3333333322 455555555555444444444
Q ss_pred ----CCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccC--------CCCCcEEEccCCcCCCCCCc
Q 038605 274 ----RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWN--------LKDILQLNISSNYFTGPLPL 341 (485)
Q Consensus 274 ----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--------~~~L~~L~l~~~~l~~~~~~ 341 (485)
.+++|++|++++|.+.......+..+++|+.|++++|.++.+|..... +++|++|++++|++. ..+.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccCh
Confidence 444455555555544433222333444555555555554444432211 114444444444444 2333
Q ss_pred ccc--CCCCCCeEEccCCcccccCcccccCCCCCCEEECC------CCcccccCCccccCCCCCCEEeCCCCcccccCcc
Q 038605 342 EIG--NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLG------YNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPA 413 (485)
Q Consensus 342 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~------~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 413 (485)
.+. .+++|++|++++|.+.+ +|..+..+++|++|+++ +|++.+..|..+..+++|++|++++|++. .+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCH
Confidence 332 44444444444444443 34444444444444442 23333344444444444444444444442 3333
Q ss_pred cccCCCCCCceeCCCCcc
Q 038605 414 SLEKLSYLEDLNLSFNKL 431 (485)
Q Consensus 414 ~l~~l~~L~~L~l~~n~~ 431 (485)
.+. ++|++|++++|++
T Consensus 584 ~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCC--TTCCEEECCSCTT
T ss_pred hHh--CcCCEEECcCCCC
Confidence 322 4444444444444
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-44 Score=358.86 Aligned_cols=430 Identities=19% Similarity=0.201 Sum_probs=326.3
Q ss_pred ccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcc
Q 038605 9 SDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSL 88 (485)
Q Consensus 9 ~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 88 (485)
..++.++.++.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|++++..|..|.++++|++|++++|.+
T Consensus 4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred eEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 35677788999998886 8999999999999977778899999999999999999988899999999999999999999
Q ss_pred ccccchhhhhcCCCccEEEccCccccc-ccchhhhcCCCCcEEEccCcccccccchhccCCCCC--cEEEccCCcc--cc
Q 038605 89 LGCLSSIADVRLPNLEELSLWGNNFNG-TIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNL--ERLNLQDNYL--TS 163 (485)
Q Consensus 89 ~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~ 163 (485)
...... .+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+ ..+..+++| +.|++++|.+ ..
T Consensus 82 ~~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 VKISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CEEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred eecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 854433 49999999999999986 467899999999999999999875 356777888 9999999988 33
Q ss_pred CCCCccccccccCCC-CCCEEEccCCCCCCcCCccccccc-----------------------------cccccEEEccc
Q 038605 164 STPELSFLSSLSNCK-SLTLIALSNNPLDGNLRKTSVGNL-----------------------------SHSLEIFLMYN 213 (485)
Q Consensus 164 ~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-----------------------------~~~L~~L~l~~ 213 (485)
.. +..+..+. ....+++++|.+.+......+..+ .++++.|++.+
T Consensus 155 ~~-----~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 155 ED-----PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp CC-----TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred cc-----cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 31 12222222 111233344433332222222222 14455555555
Q ss_pred ccCCcCcchhh---hcCCCCCEEEcCCCcCCCCccccc-----cCCCCCCeEeccCccCCCCCC-cccCCC---CCCCEE
Q 038605 214 CNISGGISEEI---SNLTNLTTINLGGNKLNGSIPIAL-----GKLQKLQYLGLEDNKLEGSIP-DDICRL---DELYEL 281 (485)
Q Consensus 214 ~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~---~~L~~L 281 (485)
+.+.......+ ...++|++|++++|.+.+..|..+ ..+++|+.+++++|.+ ..| ..+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 44432211111 113467777777776665566555 6666677777777666 223 333222 567888
Q ss_pred EccCCcCcccccccccCCCCCcEEeCCCCcCCC-CCccccCCCCCcEEEccCCcCCC--CCCccccCCCCCCeEEccCCc
Q 038605 282 ELGGNKLSGSIPACFGNLIALRILSLGSNELTS-IPLTFWNLKDILQLNISSNYFTG--PLPLEIGNLKVLIGIDFSMNN 358 (485)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~ 358 (485)
++++|.+.... .+..+++|++|++++|.++. +|..+..+++|++|++++|++.+ ..+..+..+++|++|++++|.
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 88888765332 12678999999999999998 77788899999999999999986 334568899999999999999
Q ss_pred ccccCcc-cccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC
Q 038605 359 FSGVIPT-EIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 359 ~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 437 (485)
+.+.+|. .+..+++|++|++++|++++..+..+. ++|+.|++++|++. .+|..+..+++|++|++++|++. .+|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 9974554 588899999999999999877666554 79999999999999 78888889999999999999998 5665
Q ss_pred --CCCCCCCCcccccCCCCccCCCC
Q 038605 438 --GGSFGNFSAESFEGNELLCGSPN 460 (485)
Q Consensus 438 --~~~~~~L~~l~l~~np~~c~~p~ 460 (485)
...+++|+.+++++||+.|+|+.
T Consensus 462 ~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHhccCCcccEEECcCCCCcccCCc
Confidence 47899999999999999999954
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-43 Score=354.27 Aligned_cols=438 Identities=20% Similarity=0.244 Sum_probs=350.2
Q ss_pred cccccccccCCCh-hccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcc
Q 038605 10 DNFLTFQLGEIPR-EFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSL 88 (485)
Q Consensus 10 ~~~~~~~~~~lp~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 88 (485)
.+..++.++.+++ .|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 4455566776665 599999999999999999988888899999999999999999988889999999999999999998
Q ss_pred ccccchhhhhcCCCccEEEccCccccc-ccchhhhcCCCCcEEEccCcccccccchhccCCCCC----cEEEccCCcccc
Q 038605 89 LGCLSSIADVRLPNLEELSLWGNNFNG-TIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNL----ERLNLQDNYLTS 163 (485)
Q Consensus 89 ~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~ 163 (485)
....... ...+++|++|++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+++| +.+++++|.+..
T Consensus 113 ~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 113 ASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred ccCCCcc-ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 7654433 3469999999999999875 468999999999999999999988777777777777 788888887665
Q ss_pred CCCCcc--------------------------------------------------------------------------
Q 038605 164 STPELS-------------------------------------------------------------------------- 169 (485)
Q Consensus 164 ~~~~~~-------------------------------------------------------------------------- 169 (485)
..+...
T Consensus 192 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 271 (570)
T 2z63_A 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271 (570)
T ss_dssp ECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEE
T ss_pred cCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhh
Confidence 432210
Q ss_pred --ccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCcccc
Q 038605 170 --FLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIA 247 (485)
Q Consensus 170 --~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 247 (485)
.+..+..+++|+.++++++.+.. .+ ..+... +++.|++.+|.+. .++. ..+++|++|++++|.+....+.
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~~l~~-l~-~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSVTIER-VK-DFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESCEECS-CC-BCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhchhhhcCcCcccEEEecCccchh-hh-hhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence 01223445666667666666542 21 122222 6777777777666 3332 4567888888888877644433
Q ss_pred ccCCCCCCeEeccCccCCCCC--CcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCC--ccccCCC
Q 038605 248 LGKLQKLQYLGLEDNKLEGSI--PDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP--LTFWNLK 323 (485)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~ 323 (485)
..+++|++|++++|.++... +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+...+ ..+..++
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 67899999999999988543 56788999999999999998855444 899999999999999998854 3678899
Q ss_pred CCcEEEccCCcCCCCCCccccCCCCCCeEEccCCccc-ccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeC
Q 038605 324 DILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFS-GVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNL 402 (485)
Q Consensus 324 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 402 (485)
+|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 9999999999999888888999999999999999987 467888999999999999999999888999999999999999
Q ss_pred CCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCC-CCCCc--ccccCCCCccCCC
Q 038605 403 SNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSF-GNFSA--ESFEGNELLCGSP 459 (485)
Q Consensus 403 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~-~~L~~--l~l~~np~~c~~p 459 (485)
++|++.+..+..+..+++|++|++++|++.+..|....+ ..++. -.+.+.+ .|..|
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 999999888888999999999999999999888865333 22221 3445555 66554
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-42 Score=351.57 Aligned_cols=414 Identities=22% Similarity=0.215 Sum_probs=331.6
Q ss_pred CcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEcc
Q 038605 30 LEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLW 109 (485)
Q Consensus 30 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (485)
-++++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....+..+. .+++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~-~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH-GLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh-chhhcCEeECC
Confidence 467899999998 6666554 7999999999999998888999999999999999999876555544 59999999999
Q ss_pred CcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCC
Q 038605 110 GNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNP 189 (485)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 189 (485)
+|.+.+..|..+.++++|++|++++|.+.+..+..++++++|++|++++|.+.... .+..+.++++|++|++++|.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC----CCGGGGTCTTCCEEECCSSC
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee----chHhHhhcCCCCEEEccCCc
Confidence 99999777999999999999999999999877788999999999999999987642 35678899999999999998
Q ss_pred CCCcCCc--ccccccc-----------------------ccccEEEcccccCCc--------------------------
Q 038605 190 LDGNLRK--TSVGNLS-----------------------HSLEIFLMYNCNISG-------------------------- 218 (485)
Q Consensus 190 ~~~~~~~--~~~~~~~-----------------------~~L~~L~l~~~~~~~-------------------------- 218 (485)
+.+.... ..+..+. .+++.|++++|.+..
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 7653321 1111111 146666666654320
Q ss_pred --------------------------------CcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCC
Q 038605 219 --------------------------------GISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEG 266 (485)
Q Consensus 219 --------------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 266 (485)
..+. +..+++|+.|+++++.+. ..+ .+..+++|++|++++|.+.
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~- 320 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK- 320 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-
Confidence 1111 445677888888887775 344 6667777777777777763
Q ss_pred CCCc--------------------ccCCCCCCCEEEccCCcCccc--ccccccCCCCCcEEeCCCCcCCCCCccccCCCC
Q 038605 267 SIPD--------------------DICRLDELYELELGGNKLSGS--IPACFGNLIALRILSLGSNELTSIPLTFWNLKD 324 (485)
Q Consensus 267 ~~~~--------------------~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 324 (485)
..|. .+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.+|..+..+++
T Consensus 321 ~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400 (606)
T ss_dssp SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTT
T ss_pred ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCC
Confidence 3342 234456666666666665543 255677788888888888888888878888999
Q ss_pred CcEEEccCCcCCCCCC-ccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccc-cCCccccCCCCCCEEeC
Q 038605 325 ILQLNISSNYFTGPLP-LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRG-SIPDSFGDLISLKFLNL 402 (485)
Q Consensus 325 L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l 402 (485)
|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 480 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEEC
Confidence 9999999999887666 578889999999999999998888889999999999999999986 47888999999999999
Q ss_pred CCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCc
Q 038605 403 SNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELL 455 (485)
Q Consensus 403 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~ 455 (485)
++|.+.+..+..+..+++|++|++++|++.+..|.. ..+++|+.|++++|...
T Consensus 481 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 999999888889999999999999999999877754 88999999999999854
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-42 Score=360.19 Aligned_cols=348 Identities=20% Similarity=0.239 Sum_probs=199.5
Q ss_pred CCccccCCCCCCEEEccCCccccc-----------------cchhh-hhcCCCccEEEccCcccccccchhhhcCCCCcE
Q 038605 68 VPAAIFNVSTLKLLQLQNNSLLGC-----------------LSSIA-DVRLPNLEELSLWGNNFNGTIPRFIFNASKLSI 129 (485)
Q Consensus 68 ~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (485)
+|..+.++++|++|+|++|.+.+. ++... +..+++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 455666666677777766666651 22222 224666666666666666666666666666666
Q ss_pred EEccCcc-ccc-ccchhccCC-------CCCcEEEccCCccccCCCCccccc--cccCCCCCCEEEccCCCCCCcCCccc
Q 038605 130 LELVGNS-FSG-FIPNTFGNL-------RNLERLNLQDNYLTSSTPELSFLS--SLSNCKSLTLIALSNNPLDGNLRKTS 198 (485)
Q Consensus 130 L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~ 198 (485)
|++++|. +++ ..|..+..+ ++|+.|++++|.+.. .+. .+..+++|+.|++++|.+. ..+ .
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~ 590 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE------FPASASLQKMVKLGLLDCVHNKVR-HLE--A 590 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB------CCCHHHHTTCTTCCEEECTTSCCC-BCC--C
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc------cCChhhhhcCCCCCEEECCCCCcc-cch--h
Confidence 6666665 555 445444433 366666666666653 223 4566666666666666655 222 3
Q ss_pred cccccccccEEEcccccCCcCcchhhhcCCC-CCEEEcCCCcCCCCccccccCCC--CCCeEeccCccCCCCCCcc---c
Q 038605 199 VGNLSHSLEIFLMYNCNISGGISEEISNLTN-LTTINLGGNKLNGSIPIALGKLQ--KLQYLGLEDNKLEGSIPDD---I 272 (485)
Q Consensus 199 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~---l 272 (485)
+..+ ++|+.|++++|.+. .++..+..+++ |++|++++|.+. .+|..+...+ +|+.|++++|.+.+..|.. +
T Consensus 591 ~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 3333 55666666666665 55555666666 666666666665 4454444443 2666666666665433321 1
Q ss_pred C--CCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCC--------CCCcEEEccCCcCCCCCCcc
Q 038605 273 C--RLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNL--------KDILQLNISSNYFTGPLPLE 342 (485)
Q Consensus 273 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~--------~~L~~L~l~~~~l~~~~~~~ 342 (485)
. ..++|+.|++++|.+.......+..+++|+.|++++|.++.+|...... ++|+.|++++|++. ..+..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 1 2335666666666665333333345666666666666666655533221 25666666666665 34444
Q ss_pred cc--CCCCCCeEEccCCcccccCcccccCCCCCCEEECCC------CcccccCCccccCCCCCCEEeCCCCcccccCccc
Q 038605 343 IG--NLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY------NRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPAS 414 (485)
Q Consensus 343 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 414 (485)
+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++ |.+.+..|..+..+++|+.|++++|++ +.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 44 56666666666666664 455555666666666654 445555566666666666666666666 355554
Q ss_pred ccCCCCCCceeCCCCccc
Q 038605 415 LEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 415 l~~l~~L~~L~l~~n~~~ 432 (485)
+. ++|+.|++++|++.
T Consensus 825 l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNI 840 (876)
T ss_dssp CC--SSSCEEECCSCTTC
T ss_pred hc--CCCCEEECCCCCCC
Confidence 43 46666666666664
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8.1e-42 Score=350.82 Aligned_cols=444 Identities=23% Similarity=0.251 Sum_probs=327.9
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
..++|.+..+.++|+.+. +++++|+|++|.|++..+..|.++++|++|+|++|.++++.+.+|.++++|++|+|++|.
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 357888899999999885 489999999999997778899999999999999999998888999999999999999999
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccc-cchhccCCCCCcEEEccCCccccCCC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGF-IPNTFGNLRNLERLNLQDNYLTSSTP 166 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~ 166 (485)
+....+..+ ..+++|++|++++|.+++..+..+.++++|++|++++|.+... .+..+..+++|++|++++|.+....+
T Consensus 112 l~~l~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQSLALGAF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCEECGGGG-TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCHHHh-cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 986555444 4599999999999999866666789999999999999998754 56778899999999999998876532
Q ss_pred CccccccccCC------------------------CCCCEEEccCCCCC-------------------------Cc--C-
Q 038605 167 ELSFLSSLSNC------------------------KSLTLIALSNNPLD-------------------------GN--L- 194 (485)
Q Consensus 167 ~~~~~~~l~~~------------------------~~L~~L~l~~~~~~-------------------------~~--~- 194 (485)
.. ...+... ..+..+.+.++... .. .
T Consensus 191 ~~--l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 191 TD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp GG--GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred cc--ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc
Confidence 21 0001110 01111222211100 00 0
Q ss_pred --Cc--------------------------cccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccc
Q 038605 195 --RK--------------------------TSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPI 246 (485)
Q Consensus 195 --~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 246 (485)
.. .........++.+.+..+.+.... .+.....++.|++.++.+......
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~ 346 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL 346 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc
Confidence 00 000011134556666655443322 234455667777666655432211
Q ss_pred -------------------cccCCCCCCeEeccCccCCC--CCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEE
Q 038605 247 -------------------ALGKLQKLQYLGLEDNKLEG--SIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 247 -------------------~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
....+++|+.+++++|.+.. ..+..+....+|+.+++..+.... ....+..+++|+.+
T Consensus 347 ~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHL 425 (635)
T ss_dssp BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEE
T ss_pred cchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccch
Confidence 12234556666666555432 223334455566666666665442 33456677888888
Q ss_pred eCCCCcCCCCC--ccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCccc-ccCcccccCCCCCCEEECCCCc
Q 038605 306 SLGSNELTSIP--LTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFS-GVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 306 ~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
++..+...... ..+..+++++.++++.|.+....+..+..++.+++|++++|... ...|..|..+++|++|++++|+
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence 88877665532 35667889999999999998888888889999999999999754 4567889999999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCC-CCCCcccccCCCCccCCC
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSF-GNFSAESFEGNELLCGSP 459 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~L~~l~l~~np~~c~~p 459 (485)
+++..|..|..+++|++|+|++|++.+..+..+..+++|++|++++|++++..|.. ..+ ++|+.|++++|||.|+|.
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99888999999999999999999999888889999999999999999999887765 444 789999999999999994
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.2e-42 Score=345.40 Aligned_cols=431 Identities=19% Similarity=0.219 Sum_probs=320.5
Q ss_pred ccccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 7 RTSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
...+++.++.++.+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3468888899999999874 89999999999999777789999999999999999999988999999999999999999
Q ss_pred ccccccchhhhhcCCCccEEEccCccccc-ccchhhhcCCCCcEEEccCcccccccchhccCCCCC--cEEEccCCcc--
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNG-TIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNL--ERLNLQDNYL-- 161 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~-- 161 (485)
.+...... .+++|++|++++|.+.+ ..|..+.++++|++|++++|.+... .+..+++| +.|++++|.+
T Consensus 111 ~l~~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 111 RLQNISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp CCCEECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred cCCccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 99854443 49999999999999985 3468899999999999999998753 35555566 9999999988
Q ss_pred ccCCCCccccccccCCC--CCCEEEccCCCCCCcCCccccccccccccEEEcccccCC----cCcchhhhcCC-------
Q 038605 162 TSSTPELSFLSSLSNCK--SLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNIS----GGISEEISNLT------- 228 (485)
Q Consensus 162 ~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~------- 228 (485)
....+ ..+..+. .+ .+++++|.+........+..+ ++++.+++.++... ......+..++
T Consensus 184 ~~~~~-----~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 184 KGGET-----ESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNAL-GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp CSSSC-----CEEEECCEEEE-EEEECSSSCCCCCCEEEESSE-EEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred cccCc-----ccccccCcceE-EEEecCccchhhhhhhccccc-ceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 44422 2333322 22 345566655544443333333 55666666655310 01111223333
Q ss_pred --------------------CCCEEEcCCCcCCCCccccc-----cCCCCCCeEeccCccCCCCCC-cccC---CCCCCC
Q 038605 229 --------------------NLTTINLGGNKLNGSIPIAL-----GKLQKLQYLGLEDNKLEGSIP-DDIC---RLDELY 279 (485)
Q Consensus 229 --------------------~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~---~~~~L~ 279 (485)
+|++|++++|.+.+..|..+ ..++.|+.+++..+.+ ..| ..+. ...+|+
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCS
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcce
Confidence 55555665555554444433 2223333333333332 111 1111 125688
Q ss_pred EEEccCCcCcccccccccCCCCCcEEeCCCCcCCC-CCccccCCCCCcEEEccCCcCCCCC--CccccCCCCCCeEEccC
Q 038605 280 ELELGGNKLSGSIPACFGNLIALRILSLGSNELTS-IPLTFWNLKDILQLNISSNYFTGPL--PLEIGNLKVLIGIDFSM 356 (485)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~ 356 (485)
.|++++|.+.... ....+++|+.|++++|.++. +|..+..+++|++|++++|++.+.. +..+..+++|++|++++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 8888888775322 12678999999999999998 6778889999999999999998643 34578999999999999
Q ss_pred CcccccCc-ccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccC
Q 038605 357 NNFSGVIP-TEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEI 435 (485)
Q Consensus 357 ~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 435 (485)
|.+.+.++ ..+..+++|++|++++|++++..+..+. ++|+.|++++|++. .+|..+..+++|++|++++|+++ .+
T Consensus 413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l 488 (562)
T 3a79_B 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SV 488 (562)
T ss_dssp SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CC
T ss_pred CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CC
Confidence 99987444 4688899999999999999866655544 79999999999998 67777779999999999999998 56
Q ss_pred CC--CCCCCCCCcccccCCCCccCCCCC
Q 038605 436 PR--GGSFGNFSAESFEGNELLCGSPNL 461 (485)
Q Consensus 436 p~--~~~~~~L~~l~l~~np~~c~~p~~ 461 (485)
|. ...+++|+.+++++|||.|+||..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred CHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 65 588999999999999999999643
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-42 Score=349.54 Aligned_cols=414 Identities=18% Similarity=0.238 Sum_probs=342.4
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceec---------------------------------CCccc--
Q 038605 28 ADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGI---------------------------------VPAAI-- 72 (485)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~---------------------------------~~~~l-- 72 (485)
.+++.|+|+++.+.+.+|..++++++|++|+|++|.+... .+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5789999999999999999999999999999999965200 00000
Q ss_pred -----------------cCCCCCCEEEcc--CCccccccchhhhhcCCCccEEEccCcccccc-----------------
Q 038605 73 -----------------FNVSTLKLLQLQ--NNSLLGCLSSIADVRLPNLEELSLWGNNFNGT----------------- 116 (485)
Q Consensus 73 -----------------~~l~~L~~L~L~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------- 116 (485)
.....++.+.+. +|.+++ ++..+. ++++|++|++++|.+++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhccc
Confidence 011122222232 456666 555444 599999999999999864
Q ss_pred cchhhh--cCCCCcEEEccCcccccccchhccCCCCCcEEEccCCc-ccc-CCCCccccccccC------CCCCCEEEcc
Q 038605 117 IPRFIF--NASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNY-LTS-STPELSFLSSLSN------CKSLTLIALS 186 (485)
Q Consensus 117 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~~~l~~------~~~L~~L~l~ 186 (485)
+|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|. +.+ . .+..+.. +++|+.|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-----lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ-----LKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-----HHHHHHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc-----chHHHHhhhccccCCCCCEEECC
Confidence 899988 99999999999999999999999999999999999998 764 2 3334444 4999999999
Q ss_pred CCCCCCcCCc-cccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCC-CCeEeccCccC
Q 038605 187 NNPLDGNLRK-TSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQK-LQYLGLEDNKL 264 (485)
Q Consensus 187 ~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~ 264 (485)
+|.+. ..+. ..+..+ ++|+.|++++|.+...++ .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.+
T Consensus 314 ~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 314 YNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp SSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC
T ss_pred CCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC
Confidence 99988 4442 255555 789999999999986677 7889999999999999998 77778889999 99999999999
Q ss_pred CCCCCcccCCCC--CCCEEEccCCcCccccccccc-------CCCCCcEEeCCCCcCCCCCccc-cCCCCCcEEEccCCc
Q 038605 265 EGSIPDDICRLD--ELYELELGGNKLSGSIPACFG-------NLIALRILSLGSNELTSIPLTF-WNLKDILQLNISSNY 334 (485)
Q Consensus 265 ~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~ 334 (485)
+ .+|..+...+ +|+.|++++|.+.+..+..+. .+++|+.|++++|.++.+|..+ ..+++|++|++++|.
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 9 6777776654 899999999999887777777 7889999999999999988754 458999999999999
Q ss_pred CCCCCCccccCCC-------CCCeEEccCCcccccCccccc--CCCCCCEEECCCCcccccCCccccCCCCCCEEeC---
Q 038605 335 FTGPLPLEIGNLK-------VLIGIDFSMNNFSGVIPTEIG--GLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNL--- 402 (485)
Q Consensus 335 l~~~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l--- 402 (485)
+.......+.... +|++|++++|.+. .+|..+. .+++|++|++++|++++ +|..+..+++|+.|++
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N 546 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ 546 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSC
T ss_pred CCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCC
Confidence 9854444444333 9999999999999 5677776 89999999999999996 8888999999999999
Q ss_pred ---CCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccC
Q 038605 403 ---SNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCG 457 (485)
Q Consensus 403 ---~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~ 457 (485)
++|.+.+.+|..+..+++|++|++++|++ +.+|.. ..++|+.|++++||+.|-
T Consensus 547 ~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred cccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 45778888999999999999999999999 688876 338999999999998873
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.5e-41 Score=337.77 Aligned_cols=416 Identities=20% Similarity=0.191 Sum_probs=316.1
Q ss_pred cccccccccCC-ChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcc
Q 038605 10 DNFLTFQLGEI-PREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSL 88 (485)
Q Consensus 10 ~~~~~~~~~~l-p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 88 (485)
.+..++.++.+ |..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+
T Consensus 31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 110 (549)
T 2z81_A 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110 (549)
T ss_dssp EECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred EECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence 44455566666 46699999999999999999988888999999999999999999987777799999999999999998
Q ss_pred ccccchhhhhcCCCccEEEccCcccccccc-hhhhcCCCCcEEEccCcccccccchhccC--------------------
Q 038605 89 LGCLSSIADVRLPNLEELSLWGNNFNGTIP-RFIFNASKLSILELVGNSFSGFIPNTFGN-------------------- 147 (485)
Q Consensus 89 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------- 147 (485)
........+..+++|++|++++|...+.++ ..+..+++|++|++++|.+.+..+..+..
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 190 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI 190 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHH
T ss_pred cccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchh
Confidence 754322233458999999999987443444 57888899999999988888766665554
Q ss_pred ----CCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccc--ccccc------------------
Q 038605 148 ----LRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTS--VGNLS------------------ 203 (485)
Q Consensus 148 ----l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~------------------ 203 (485)
+++|++|++++|.+.+.... .......+++|+.++++++.+.+...... .....
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~ 268 (549)
T 2z81_A 191 FADILSSVRYLELRDTNLARFQFS--PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268 (549)
T ss_dssp HHHSTTTBSEEEEESCBCTTCCCC--CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC
T ss_pred hHhhcccccEEEccCCcccccccc--ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc
Confidence 45666666666666553211 01123456788888888876543211100 00111
Q ss_pred ------------ccccEEEcccccCCcC-----cchhhhcCCCCCEEEcCCCcCCCCccccc-cCCCCCCeEeccCccCC
Q 038605 204 ------------HSLEIFLMYNCNISGG-----ISEEISNLTNLTTINLGGNKLNGSIPIAL-GKLQKLQYLGLEDNKLE 265 (485)
Q Consensus 204 ------------~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~ 265 (485)
++++.+.+.++.+... .+......++|++|++++|.+. ..|..+ ..+++|++|++++|.++
T Consensus 269 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCC
T ss_pred ccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccc
Confidence 3344444444433221 1122344578999999999987 555544 57999999999999998
Q ss_pred CCCC---cccCCCCCCCEEEccCCcCccccc--ccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCC
Q 038605 266 GSIP---DDICRLDELYELELGGNKLSGSIP--ACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLP 340 (485)
Q Consensus 266 ~~~~---~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 340 (485)
+..+ ..+..+++|++|++++|.+.+... ..+..+++|+.|++++|.++.+|..+..+++|++|++++|++.....
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~ 427 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKT 427 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCT
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccc
Confidence 6543 346789999999999999975432 45888999999999999999999988899999999999999875332
Q ss_pred ccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCC
Q 038605 341 LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSY 420 (485)
Q Consensus 341 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 420 (485)
.+ .++|++|++++|.+++. ...+++|++|++++|+++ .+|. ...+++|++|++++|++.+..+..+..+++
T Consensus 428 -~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 428 -CI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp -TS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred -hh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 22 26899999999999864 357899999999999998 5665 567899999999999999888888999999
Q ss_pred CCceeCCCCcccccCCC
Q 038605 421 LEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 421 L~~L~l~~n~~~~~~p~ 437 (485)
|+.|++++|++.+..|.
T Consensus 499 L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 499 LQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCEEECCSSCBCCCHHH
T ss_pred cCEEEecCCCccCCCcc
Confidence 99999999999877763
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-40 Score=344.69 Aligned_cols=371 Identities=17% Similarity=0.194 Sum_probs=303.6
Q ss_pred CCcCCCCCCCCCEEeccCcccee-----------------cCCcccc--CCCCCCEEEccCCccccccchhhhhcCCCcc
Q 038605 44 IPLEIGNLQNLEELDLRQNKLVG-----------------IVPAAIF--NVSTLKLLQLQNNSLLGCLSSIADVRLPNLE 104 (485)
Q Consensus 44 ~~~~~~~l~~L~~L~L~~~~i~~-----------------~~~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 104 (485)
+|..|.++++|++|+|++|.+++ .+|..+. ++++|++|++++|.+.+..+..+. .+++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCC
Confidence 67789999999999999999997 3788877 999999999999998877776555 499999
Q ss_pred EEEccCcc-ccc-ccchhhhcCC-------CCcEEEccCcccccccch--hccCCCCCcEEEccCCccccCCCCcccccc
Q 038605 105 ELSLWGNN-FNG-TIPRFIFNAS-------KLSILELVGNSFSGFIPN--TFGNLRNLERLNLQDNYLTSSTPELSFLSS 173 (485)
Q Consensus 105 ~L~l~~~~-~~~-~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 173 (485)
+|++++|. +++ .+|..+..++ +|++|++++|.+. .+|. .+.++++|+.|++++|.+..+ + .
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l------p-~ 590 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL------E-A 590 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC------C-C
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc------h-h
Confidence 99999998 887 6787776655 9999999999999 6777 899999999999999998843 3 6
Q ss_pred ccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCC--CCCEEEcCCCcCCCCcccc---c
Q 038605 174 LSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLT--NLTTINLGGNKLNGSIPIA---L 248 (485)
Q Consensus 174 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~---l 248 (485)
+..+++|+.|++++|.+. ..+ ..+..++.+|+.|++++|.+. .+|..+.... +|+.|++++|.+.+..+.. +
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp-~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIP-EDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCC-TTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCCCcceEEECcCCccc-cch-HHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 889999999999999987 443 345566334999999999988 6676666654 4999999999998655432 2
Q ss_pred c--CCCCCCeEeccCccCCCCCCcc-cCCCCCCCEEEccCCcCcccccccccC-------CCCCcEEeCCCCcCCCCCcc
Q 038605 249 G--KLQKLQYLGLEDNKLEGSIPDD-ICRLDELYELELGGNKLSGSIPACFGN-------LIALRILSLGSNELTSIPLT 318 (485)
Q Consensus 249 ~--~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~l~~~~~~ 318 (485)
. ..++|+.|++++|.++. +|.. +..+++|+.|++++|.+.......+.. +++|+.|++++|.++.+|..
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~ 746 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746 (876)
T ss_dssp TTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred ccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence 2 34589999999999994 4544 458899999999999988443333332 34999999999999999988
Q ss_pred cc--CCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccC------CcccccCcccccCCCCCCEEECCCCcccccCCcc
Q 038605 319 FW--NLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSM------NNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDS 390 (485)
Q Consensus 319 ~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 390 (485)
+. .+++|+.|++++|++.+ .+..+..+++|+.|++++ |.+.+.+|..+..+++|+.|++++|++. .+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC-ccCHh
Confidence 87 89999999999999997 677888999999999976 7778888999999999999999999994 77777
Q ss_pred ccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcc
Q 038605 391 FGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKL 431 (485)
Q Consensus 391 ~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 431 (485)
+. ++|+.|+|++|++....+..+.....+..+.+.+|+.
T Consensus 825 l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred hc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 65 6999999999998766555554333444444444443
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.6e-40 Score=323.69 Aligned_cols=384 Identities=21% Similarity=0.216 Sum_probs=259.6
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccce-ecCCccccCCCCCCEEEccCC
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLV-GIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~-~~~~~~l~~l~~L~~L~L~~~ 86 (485)
..+.|.+..++.+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+. ...+..|.++++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 347777788888887 4 367888888888888777777888888888888888765 344566777777777777777
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchh--hhcCCCCcEEEccCcccccccchh-ccCCCCCcEEEccCCcccc
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRF--IFNASKLSILELVGNSFSGFIPNT-FGNLRNLERLNLQDNYLTS 163 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~ 163 (485)
.+....+..+. .+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+.. +..+++|++|++++|.+..
T Consensus 90 ~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 76544333333 3566666666666554332222 444455555555555444433332 3444444444444443332
Q ss_pred CCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhc--CCCCCEEEcCCCcCC
Q 038605 164 STPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISN--LTNLTTINLGGNKLN 241 (485)
Q Consensus 164 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~ 241 (485)
. .. ..+.. ..+|+.++++++.+.
T Consensus 169 ~-----------------------------~~--------------------------~~l~~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 169 I-----------------------------CE--------------------------EDLLNFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp C-----------------------------CT--------------------------TTSGGGTTCEEEEEECTTCBCT
T ss_pred c-----------------------------Ch--------------------------hhhhccccccccccccccCccc
Confidence 2 11 11111 157888899988887
Q ss_pred CCcccc--------ccCCCCCCeEeccCccCCCCCCcccCC---CCCCCEEEccCCcCcccccccccCCCCCcEEeCCCC
Q 038605 242 GSIPIA--------LGKLQKLQYLGLEDNKLEGSIPDDICR---LDELYELELGGNKLSGSIPACFGNLIALRILSLGSN 310 (485)
Q Consensus 242 ~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 310 (485)
+..+.. +..+++|++|++++|.+++..+..+.. .++|+.|++++|...+... ..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~ 259 (455)
T 3v47_A 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHT 259 (455)
T ss_dssp TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCC
T ss_pred ccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chh
Confidence 543322 224466777777777766544443322 2667777777665432210 011
Q ss_pred cCCC---CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccC
Q 038605 311 ELTS---IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSI 387 (485)
Q Consensus 311 ~l~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 387 (485)
.+.. ........++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC
Confidence 1111 1111113468999999999998877888888999999999999998888888999999999999999998777
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCCCCCcc
Q 038605 388 PDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLQYY 464 (485)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p~~~~~ 464 (485)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+.. ..+++|+.|++++||+.|+||...|+
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 888899999999999999998888888999999999999999998544433 78899999999999999999876554
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=346.46 Aligned_cols=417 Identities=24% Similarity=0.219 Sum_probs=302.9
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccC
Q 038605 31 EQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWG 110 (485)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (485)
+..+.++++++ .+|. -.++|++|+|++|.+++..+..|.++++|++|++++|.....+....+.++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46778888888 5564 4579999999999999999999999999999999999665555444455699999999999
Q ss_pred cccccccchhhhcCCCCcEEEccCcccccccchh--ccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCC
Q 038605 111 NNFNGTIPRFIFNASKLSILELVGNSFSGFIPNT--FGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNN 188 (485)
Q Consensus 111 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 188 (485)
|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+..... ...+.++++|+.|++++|
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~----~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL----HPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC----CGGGGTCSSCCEEEEESS
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc----chhHhhCCCCCEEECCCC
Confidence 9999788999999999999999999998755554 8899999999999999877632 246889999999999999
Q ss_pred CCCCcCCcccccccc-cc------------------------------ccEEEcccccCCcCcchhhh------------
Q 038605 189 PLDGNLRKTSVGNLS-HS------------------------------LEIFLMYNCNISGGISEEIS------------ 225 (485)
Q Consensus 189 ~~~~~~~~~~~~~~~-~~------------------------------L~~L~l~~~~~~~~~~~~l~------------ 225 (485)
.+...... .+..+. ++ ++.|++++|.+....+..+.
T Consensus 159 ~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 87654331 111110 12 66666666644332221111
Q ss_pred ------------------------c--CCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCC
Q 038605 226 ------------------------N--LTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELY 279 (485)
Q Consensus 226 ------------------------~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (485)
. .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.++++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 1 25677777777777766666777788888888888888777777788888888
Q ss_pred EEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEccCCcCCCCCC------------------
Q 038605 280 ELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGPLP------------------ 340 (485)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~------------------ 340 (485)
+|++++|.+.+..+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.+...
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 88888888876667778888888888888888877654 46677888888888877653210
Q ss_pred ----------------------ccccCCCCCCeEEccCCcccccCcc-cccCCCCCCEEECCCCccc-----ccCCcccc
Q 038605 341 ----------------------LEIGNLKVLIGIDFSMNNFSGVIPT-EIGGLKNLEYLFLGYNRLR-----GSIPDSFG 392 (485)
Q Consensus 341 ----------------------~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-----~~~~~~~~ 392 (485)
..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+. +..+..|.
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 0011344555555555555432221 2334555666666666554 22234567
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCC
Q 038605 393 DLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 393 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
.+++|+.|++++|.+.+..+..+..+++|++|++++|++++ +|.....++|+.|++++|.. .+.
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~~L~~L~Ls~N~l-~~~ 541 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPANLEILDISRNQL-LAP 541 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCCSCCCEEEEEEECC-CCC
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhhccccEEECCCCcC-CCC
Confidence 78888888888888887777788888999999999998874 44444448899999999974 444
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-39 Score=319.89 Aligned_cols=367 Identities=19% Similarity=0.195 Sum_probs=249.0
Q ss_pred cccccccccCC-ChhccCCCCCcEEEccCCccccc-CCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 10 DNFLTFQLGEI-PREFGNLADLEQMSLWENNLRGE-IPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 10 ~~~~~~~~~~l-p~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
.+..++.++.+ |..|.++++|++|++++|.+.+. .+..|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC
Confidence 44555666666 66799999999999999998744 46689999999999999999998889999999999999999999
Q ss_pred cccccch-hhhhcCCCccEEEccCcccccccchh-hhcCCCCcEEEccCcccccccchhccCC--CCCcEEEccCCcccc
Q 038605 88 LLGCLSS-IADVRLPNLEELSLWGNNFNGTIPRF-IFNASKLSILELVGNSFSGFIPNTFGNL--RNLERLNLQDNYLTS 163 (485)
Q Consensus 88 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~ 163 (485)
+.+..+. ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|+++++.+..
T Consensus 115 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccc
Confidence 8753322 22445999999999999998776765 8899999999999999998877777765 678888888887776
Q ss_pred CCCCccc---cccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhc---CCCCCEEEcCC
Q 038605 164 STPELSF---LSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISN---LTNLTTINLGG 237 (485)
Q Consensus 164 ~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~L~~L~l~~ 237 (485)
....... ...+..++ +|+.|++++|.+....+..+.. .++|+.|++++
T Consensus 195 ~~~~~~~~~~~~~~~~~~--------------------------~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNT--------------------------SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CSTTCTTHHHHCCTTTTC--------------------------EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cchhhccccccccccccc--------------------------eeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 5332100 00011122 3333333333333323322222 24555555555
Q ss_pred CcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC-CC
Q 038605 238 NKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS-IP 316 (485)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~ 316 (485)
+...+... ..+.+.......+.. ...++|+.|++++|.+.. .+
T Consensus 249 ~~~~~~~~--------------~~~~~~~~~~~~~~~----------------------~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 249 SYNMGSSF--------------GHTNFKDPDNFTFKG----------------------LEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp CTTTSCCT--------------TCCSSCCCCTTTTGG----------------------GTTSCCCEEECCSSCCCEECT
T ss_pred cccccccc--------------chhhhccCccccccc----------------------ccccCceEEEecCccccccch
Confidence 54331100 000111000001110 122455566666655555 34
Q ss_pred ccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCC
Q 038605 317 LTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLIS 396 (485)
Q Consensus 317 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~ 396 (485)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 44555666666666666666555556666777777777777776666677777888888888888887666777888888
Q ss_pred CCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC
Q 038605 397 LKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG 438 (485)
Q Consensus 397 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 438 (485)
|++|++++|++.+..+..+..+++|++|++++|++.+.+|..
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 888888888887665566777888888888888888777754
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=326.12 Aligned_cols=409 Identities=21% Similarity=0.218 Sum_probs=321.8
Q ss_pred cccccccccccCCC-hhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 8 TSDNFLTFQLGEIP-REFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 8 ~~~~~~~~~~~~lp-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
...+..++.+..++ ..|.++++|++|++++|.+++..|..|.++++|++|++++|.++.... . .+++|++|++++|
T Consensus 24 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 24 TILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-H--PTVNLKHLDLSFN 100 (520)
T ss_dssp SEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-C--CCCCCSEEECCSS
T ss_pred cEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-c--ccCCccEEeccCC
Confidence 34555567777777 569999999999999999998888899999999999999999986543 3 8999999999999
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCC--cEEEccCccc--ccccchhccC---------------
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKL--SILELVGNSF--SGFIPNTFGN--------------- 147 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~~~--------------- 147 (485)
.+........+..+++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..+..+..
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 177 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence 99864332233459999999999999874 456677888 9999999988 5555555554
Q ss_pred -----------CCCCcEEEccCCc-------cccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccc-cccccccE
Q 038605 148 -----------LRNLERLNLQDNY-------LTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVG-NLSHSLEI 208 (485)
Q Consensus 148 -----------l~~L~~L~l~~~~-------~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~ 208 (485)
+++|+.+++++|. +.+ .+..+..+++|+.++++++.+.+........ ...++++.
T Consensus 178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~------~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS------ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH------HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred hhhhhhhhhhcccceeeccccccccccccceeec------chhhhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 4455555555543 111 1224666777888887776654322111110 01248999
Q ss_pred EEcccccCCcCcchhh-----hcCCCCCEEEcCCCcCCCCcc-ccccCC---CCCCeEeccCccCCCCCCcccCCCCCCC
Q 038605 209 FLMYNCNISGGISEEI-----SNLTNLTTINLGGNKLNGSIP-IALGKL---QKLQYLGLEDNKLEGSIPDDICRLDELY 279 (485)
Q Consensus 209 L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (485)
|++++|.+...++..+ ..+++|+.++++++.+ ..| ..+..+ .+|+.|++++|.+.... .+..+++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 9999999887777777 8899999999999988 344 344333 67999999999987442 136889999
Q ss_pred EEEccCCcCcccccccccCCCCCcEEeCCCCcCCC---CCccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCeEEcc
Q 038605 280 ELELGGNKLSGSIPACFGNLIALRILSLGSNELTS---IPLTFWNLKDILQLNISSNYFTGPLP-LEIGNLKVLIGIDFS 355 (485)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~ 355 (485)
+|++++|.+.+..+..+..+++|+.|++++|.++. +|..+..+++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECC
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECc
Confidence 99999999998788889999999999999999996 44568899999999999999987344 347888999999999
Q ss_pred CCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcc-cccCCCCCCceeCCCCccccc
Q 038605 356 MNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPA-SLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 356 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~ 434 (485)
+|.+.+..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|++.. +|. .+..+++|++|++++|++.+.
T Consensus 408 ~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 408 SNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp SSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 9999876665543 79999999999998 778878899999999999999994 555 488999999999999999865
Q ss_pred CC
Q 038605 435 IP 436 (485)
Q Consensus 435 ~p 436 (485)
.+
T Consensus 484 c~ 485 (520)
T 2z7x_B 484 CP 485 (520)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.1e-37 Score=308.97 Aligned_cols=416 Identities=21% Similarity=0.203 Sum_probs=307.3
Q ss_pred cccccccccccCCCh-hccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 8 TSDNFLTFQLGEIPR-EFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
...+..++.+..+|+ .|.++++|++|++++|.+++..|..|.++++|++|++++|.++.. |.. .+++|++|++++|
T Consensus 55 ~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~--~l~~L~~L~Ls~N 131 (562)
T 3a79_B 55 KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC--PMASLRHLDLSFN 131 (562)
T ss_dssp CEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC--CCTTCSEEECCSS
T ss_pred CEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc--ccccCCEEECCCC
Confidence 345556677888874 699999999999999999988899999999999999999999865 444 8999999999999
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCC--cEEEccCccc--ccccchhccCCCC-CcEEEccCCcc
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKL--SILELVGNSF--SGFIPNTFGNLRN-LERLNLQDNYL 161 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~~~l~~-L~~L~l~~~~~ 161 (485)
.+........+..+++|++|++++|.+... .+..+++| ++|++++|.+ .+..+..+..+.. .-.+++++|.+
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 998754333344699999999999998743 34555666 9999999988 6666666655431 11334444443
Q ss_pred ccCCCCc------------------------cccccccCCCCCCEEEccCCCCCCcCCcccc-ccccccccEEEcccccC
Q 038605 162 TSSTPEL------------------------SFLSSLSNCKSLTLIALSNNPLDGNLRKTSV-GNLSHSLEIFLMYNCNI 216 (485)
Q Consensus 162 ~~~~~~~------------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 216 (485)
....... ..+..+..+++|+.+++..+.+.+....... ....++++.|++.+|.+
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 3321100 0112233444444444444433221110000 01114899999999988
Q ss_pred CcCcchhh-----hcCCCCCEEEcCCCcCCCCcc-cccc---CCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCc
Q 038605 217 SGGISEEI-----SNLTNLTTINLGGNKLNGSIP-IALG---KLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNK 287 (485)
Q Consensus 217 ~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~l~---~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (485)
...+|..+ ..++.|+.+++..+.+ ..| ..+. ...+|++|++++|.+..... ...+++|++|++++|.
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNV 364 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSC
T ss_pred eccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCc
Confidence 86676665 5556666666666655 223 2222 23679999999998864321 2688999999999999
Q ss_pred CcccccccccCCCCCcEEeCCCCcCCCCC---ccccCCCCCcEEEccCCcCCC-CCCccccCCCCCCeEEccCCcccccC
Q 038605 288 LSGSIPACFGNLIALRILSLGSNELTSIP---LTFWNLKDILQLNISSNYFTG-PLPLEIGNLKVLIGIDFSMNNFSGVI 363 (485)
Q Consensus 288 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 363 (485)
+.+..+..+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+.+ .....+..+++|++|++++|.+++..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 99878888999999999999999999865 457889999999999999987 44445788999999999999998765
Q ss_pred cccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCccc-ccCCCCCCceeCCCCcccccCCC
Q 038605 364 PTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPAS-LEKLSYLEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 364 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p~ 437 (485)
+..+. ++|++|++++|+++ .+|..+..+++|++|++++|++. .+|.. +..+++|++|++++|++.+..|.
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 54443 69999999999998 67777779999999999999999 45554 89999999999999999876553
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.6e-36 Score=293.43 Aligned_cols=346 Identities=26% Similarity=0.433 Sum_probs=241.6
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccE
Q 038605 26 NLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEE 105 (485)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 105 (485)
.+++++.|+++++.+. .++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.+....+ ...+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCE
Confidence 3678999999999887 455 47888999999999998886544 8889999999999998876544 345899999
Q ss_pred EEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEc
Q 038605 106 LSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIAL 185 (485)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 185 (485)
|++++|.+.+. +. +..+++|++|++++|.+.+. ..+..+++|+.|++++ .+... ..+..+++|+.|++
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~-------~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL-------KPLANLTTLERLDI 184 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC-------GGGTTCTTCCEEEC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc-------hhhccCCCCCEEEC
Confidence 99999988744 33 78899999999999888754 3488889999999863 33222 23777888888888
Q ss_pred cCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCC
Q 038605 186 SNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLE 265 (485)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (485)
++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 185 ~~n~l~~~----------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 185 SSNKVSDI----------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp CSSCCCCC----------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred cCCcCCCC----------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 88776431 124455666666666666654333 455666666666666665
Q ss_pred CCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccC
Q 038605 266 GSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGN 345 (485)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 345 (485)
+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|++.+..+ +..
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcC
Confidence 32 345666677777777776654332 5666777777777777766654 5566777777777777664332 566
Q ss_pred CCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCcee
Q 038605 346 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLN 425 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 425 (485)
+++|++|++++|.+.+..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++.+..| +..+++|++|+
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 381 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEe
Confidence 6777777777777665433 56677777777777776643 356677777777777777765554 66777777777
Q ss_pred CCCCcccc
Q 038605 426 LSFNKLEG 433 (485)
Q Consensus 426 l~~n~~~~ 433 (485)
+++|++++
T Consensus 382 l~~n~~~~ 389 (466)
T 1o6v_A 382 LNDQAWTN 389 (466)
T ss_dssp CCCEEEEC
T ss_pred ccCCcccC
Confidence 77777764
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-35 Score=303.05 Aligned_cols=421 Identities=19% Similarity=0.200 Sum_probs=318.4
Q ss_pred cccccccccCCCh-hccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCcc
Q 038605 10 DNFLTFQLGEIPR-EFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSL 88 (485)
Q Consensus 10 ~~~~~~~~~~lp~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~ 88 (485)
.+...+.++.+|+ +|.++++|++|+|++|.+++..+.+|.++++|++|+|++|+++...+.+|.++++|++|++++|.+
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 3444677888886 599999999999999999987888899999999999999999988888999999999999999999
Q ss_pred ccccchhhhhcCCCccEEEccCccccc-ccchhhhcCCCCcEEEccCcccccccchhccCCCCC----cEEEccCCcccc
Q 038605 89 LGCLSSIADVRLPNLEELSLWGNNFNG-TIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNL----ERLNLQDNYLTS 163 (485)
Q Consensus 89 ~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~ 163 (485)
....... +..+++|++|++++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+.++ ..++++.+.+..
T Consensus 137 ~~l~~~~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 137 ASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp CCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCChhh-hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 8654443 3459999999999999865 467888999999999999999887766665543332 244444444332
Q ss_pred CCCCc---------------------------------------------------------------------------
Q 038605 164 STPEL--------------------------------------------------------------------------- 168 (485)
Q Consensus 164 ~~~~~--------------------------------------------------------------------------- 168 (485)
..+..
T Consensus 216 i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 216 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp ECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred cCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence 21110
Q ss_pred -cccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCc-------------------chhhhcCC
Q 038605 169 -SFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGI-------------------SEEISNLT 228 (485)
Q Consensus 169 -~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------------------~~~l~~~~ 228 (485)
.....+....+++.+.+.++.+.... .+ .....++.|++.++.+.... ......++
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~-~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERVK---DF-SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEECG---GG-GSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cchhhhhhhhccccccccccccccccc---cc-ccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 00001112223333333333221110 01 11134555555554332211 11234578
Q ss_pred CCCEEEcCCCcCCC--CccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccc-cccccCCCCCcEE
Q 038605 229 NLTTINLGGNKLNG--SIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSI-PACFGNLIALRIL 305 (485)
Q Consensus 229 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L 305 (485)
+|+.+++++|.+.. ..+..+....+|+++++..+.... .+..+..+++|+.++++.+...... ...+..+++++.+
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccc
Confidence 99999999998752 234455678899999999988763 4556788999999999988765443 3467889999999
Q ss_pred eCCCCcCCCC-CccccCCCCCcEEEccCCcCC-CCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcc
Q 038605 306 SLGSNELTSI-PLTFWNLKDILQLNISSNYFT-GPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 383 (485)
Q Consensus 306 ~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 383 (485)
+++.|.+..+ +..+..++.++.|++++|... ...+..+..+++|++|++++|++.+..+.+|.++++|++|++++|++
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 9999999884 456778899999999999754 34567788999999999999999998899999999999999999999
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCcccccCC-CCCCceeCCCCcccccCC
Q 038605 384 RGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKL-SYLEDLNLSFNKLEGEIP 436 (485)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p 436 (485)
++..+..|..+++|++|++++|++.+..|..+..+ ++|++|++++|++.....
T Consensus 531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 98888889999999999999999998889999888 689999999999975443
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.4e-35 Score=289.14 Aligned_cols=346 Identities=25% Similarity=0.394 Sum_probs=284.9
Q ss_pred CCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcE
Q 038605 50 NLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSI 129 (485)
Q Consensus 50 ~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (485)
.+++++.|+++++.+... + .+..+++|++|++++|.+....+ ...+++|++|++++|.+.+..+ +..+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 467889999998888753 3 47788999999999998876544 3458899999999988874433 888899999
Q ss_pred EEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEE
Q 038605 130 LELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIF 209 (485)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 209 (485)
|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.++++++ ..
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~~~-~~------------------ 168 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-------SALSGLTSLQQLSFGNQ-VT------------------ 168 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-------GGGTTCTTCSEEEEEES-CC------------------
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-------hhhccCCcccEeecCCc-cc------------------
Confidence 9998888876533 78888899999988877654 23667777777776421 11
Q ss_pred EcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCc
Q 038605 210 LMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLS 289 (485)
Q Consensus 210 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (485)
.. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 169 ---------~~-~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 169 ---------DL-KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp ---------CC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ---------Cc-hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 11 1267789999999999998743 347889999999999999986544 778999999999999987
Q ss_pred ccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccC
Q 038605 290 GSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGG 369 (485)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 369 (485)
+. ..+..+++|+.|++++|.+..++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence 54 468889999999999999999775 7889999999999999986543 7889999999999999986543 788
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccc
Q 038605 370 LKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESF 449 (485)
Q Consensus 370 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l 449 (485)
+++|++|++++|++.+..+ +..+++|+.|++++|++.+. ..+..+++|++|++++|++.+..| ...+++|+.|++
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 382 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL 382 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence 9999999999999986544 78899999999999999864 578899999999999999997777 888999999999
Q ss_pred cCCCCcc
Q 038605 450 EGNELLC 456 (485)
Q Consensus 450 ~~np~~c 456 (485)
++|++..
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 9999665
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=8.5e-36 Score=290.72 Aligned_cols=382 Identities=24% Similarity=0.298 Sum_probs=193.9
Q ss_pred cccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCC-------------CEEeccCccceecCCccccCCCCC
Q 038605 12 FLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNL-------------EELDLRQNKLVGIVPAAIFNVSTL 78 (485)
Q Consensus 12 ~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~i~~~~~~~l~~l~~L 78 (485)
..++.++++|+.++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++. |. -.++|
T Consensus 18 l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L 93 (454)
T 1jl5_A 18 RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHL 93 (454)
T ss_dssp ----------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTC
T ss_pred cccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCC
Confidence 3344556777777777777777777777766667666666653 6666766666542 22 13566
Q ss_pred CEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccC
Q 038605 79 KLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQD 158 (485)
Q Consensus 79 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 158 (485)
++|++++|.+.+. +. .+++|++|++++|.+.+ ++.. .++|++|++++|.+.+ .| .++++++|++|++++
T Consensus 94 ~~L~l~~n~l~~l-p~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 94 ESLVASCNSLTEL-PE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp SEEECCSSCCSSC-CC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CEEEccCCcCCcc-cc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 6777776666542 21 14566777776666652 2221 2566777777666664 33 466667777777776
Q ss_pred CccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCC
Q 038605 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGN 238 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 238 (485)
|.+...+.. ..+|+.|++++|.+.+. + .+..+ ++|+.|++.+|.+.. ++.. .++|++|++++|
T Consensus 163 N~l~~lp~~---------~~~L~~L~L~~n~l~~l-~--~~~~l-~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 163 NSLKKLPDL---------PPSLEFIAAGNNQLEEL-P--ELQNL-PFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN 225 (454)
T ss_dssp SCCSCCCCC---------CTTCCEEECCSSCCSSC-C--CCTTC-TTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred CcCcccCCC---------cccccEEECcCCcCCcC-c--cccCC-CCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence 666543221 13666777766666542 1 23333 566666666666553 2211 246666666666
Q ss_pred cCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCcc
Q 038605 239 KLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLT 318 (485)
Q Consensus 239 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 318 (485)
.+. .++ .+..+++|++|++++|.+++ .|. .+++|+.|++++|.+.+. +. .+++|+.|++++|.++.++..
T Consensus 226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 226 ILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp CCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCC
T ss_pred cCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcccCc
Confidence 665 344 25666666677776666653 232 235666666766666532 21 135666777766666665432
Q ss_pred ccCCCCCcEEEccCCcCCCCCCccccCC-CCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCC
Q 038605 319 FWNLKDILQLNISSNYFTGPLPLEIGNL-KVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISL 397 (485)
Q Consensus 319 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L 397 (485)
.++|++|++++|.+.+. ..+ ++|++|++++|.+.+ +|.. +++|++|++++|.++ .+|. .+++|
T Consensus 296 ---~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L 359 (454)
T 1jl5_A 296 ---PPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNL 359 (454)
T ss_dssp ---CTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTC
T ss_pred ---CCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhc
Confidence 25666777776666532 122 467777777776664 3322 466777777777766 3443 35677
Q ss_pred CEEeCCCCcccc--cCcccccCC-------------CCCCceeCCCCcccc--cCCCCCCCCCCCcccccCCCCcc
Q 038605 398 KFLNLSNNNLFG--AIPASLEKL-------------SYLEDLNLSFNKLEG--EIPRGGSFGNFSAESFEGNELLC 456 (485)
Q Consensus 398 ~~L~l~~~~~~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~~p~~~~~~~L~~l~l~~np~~c 456 (485)
++|++++|++.+ .+|..+..+ ++|++|++++|++++ .+| ++++.+++.+|.+.|
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERVVD 430 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred cEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----hhHhheeCcCcccCC
Confidence 777777777765 455555555 667777777777664 333 445666666665433
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-35 Score=290.10 Aligned_cols=318 Identities=20% Similarity=0.198 Sum_probs=202.5
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
..++|.+..++.+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..+.+|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 368888899999999874 689999999999998888899999999999999999998889999999999999999999
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPE 167 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 167 (485)
+.......+ ..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+...+
T Consensus 92 l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 168 (477)
T 2id5_A 92 LKLIPLGVF-TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-- 168 (477)
T ss_dssp CCSCCTTSS-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC--
T ss_pred CCccCcccc-cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC--
Confidence 876544433 34888999999988888677777888888888888888887777777777888888888877666542
Q ss_pred ccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCcccc
Q 038605 168 LSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIA 247 (485)
Q Consensus 168 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 247 (485)
...+..+++|+.|++++|.+.. ..+..+..+++|++|++++|...+..+..
T Consensus 169 ---~~~l~~l~~L~~L~l~~n~i~~--------------------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 169 ---TEALSHLHGLIVLRLRHLNINA--------------------------IRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp ---HHHHTTCTTCCEEEEESCCCCE--------------------------ECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred ---hhHhcccCCCcEEeCCCCcCcE--------------------------eChhhcccCcccceeeCCCCccccccCcc
Confidence 2234455555555555544321 11122344555666666655544333333
Q ss_pred ccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCC-CccccCCCCCc
Q 038605 248 LGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDIL 326 (485)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~ 326 (485)
.....+|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.+ +..+..+++|+
T Consensus 220 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred cccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 33334555555555555433223444455555555555544443333444444444444444444442 22333444444
Q ss_pred EEEccCCcCCCCCCccccCCCCCCeEEccCCcc
Q 038605 327 QLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNF 359 (485)
Q Consensus 327 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 359 (485)
.|++++|.+++.....+..+++|++|++++|.+
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 444444444433333333344444444444433
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=290.75 Aligned_cols=319 Identities=23% Similarity=0.212 Sum_probs=189.5
Q ss_pred CEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccC
Q 038605 55 EELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVG 134 (485)
Q Consensus 55 ~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (485)
+.++.+++.++. .|..+ .+++++|++++|.+....+..+. .+++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 456666666653 33332 24666777777766654433333 366666666666666655566666666666666666
Q ss_pred cccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccc
Q 038605 135 NSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNC 214 (485)
Q Consensus 135 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 214 (485)
|.+....+..|.++++|++|++++|.+.... +..+..+++|+.|++++|.+.
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-----~~~~~~l~~L~~L~l~~n~l~----------------------- 141 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILL-----DYMFQDLYNLKSLEVGDNDLV----------------------- 141 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-----TTTTTTCTTCCEEEECCTTCC-----------------------
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCC-----hhHccccccCCEEECCCCccc-----------------------
Confidence 6666555455566666666666666655442 223445555555555554432
Q ss_pred cCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccc
Q 038605 215 NISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPA 294 (485)
Q Consensus 215 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 294 (485)
...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.
T Consensus 142 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 142 ---YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp ---EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ---eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 22233355566777777777766655445566667777777777766665555666667777777776655544444
Q ss_pred cccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCC
Q 038605 295 CFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNL 373 (485)
Q Consensus 295 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 373 (485)
......+|+.|++++|.++.++. .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 44444466666666666666553 45556666666666666665555555666666666666666665555566666666
Q ss_pred CEEECCCCcccccCCccccCCCCCCEEeCCCCccc
Q 038605 374 EYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 374 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
++|++++|.++...+..|..+++|+.|++++|++.
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66666666665444445556666666666666654
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-33 Score=271.97 Aligned_cols=312 Identities=21% Similarity=0.251 Sum_probs=173.2
Q ss_pred CCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEE
Q 038605 75 VSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERL 154 (485)
Q Consensus 75 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 154 (485)
++++++|+++++.+.......+ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHh-cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4555555555555543332222 235555555555555544444445555555555555555554444445555555555
Q ss_pred EccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEE
Q 038605 155 NLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTIN 234 (485)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (485)
++++|.+...+. ..+..+++|++|+
T Consensus 123 ~L~~n~l~~l~~-------------------------------------------------------~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 123 VLERNDLSSLPR-------------------------------------------------------GIFHNTPKLTTLS 147 (390)
T ss_dssp ECCSSCCCCCCT-------------------------------------------------------TTTTTCTTCCEEE
T ss_pred ECCCCccCcCCH-------------------------------------------------------HHhcCCCCCcEEE
Confidence 555554443311 1123344455555
Q ss_pred cCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC
Q 038605 235 LGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS 314 (485)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 314 (485)
+++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.. +...++|+.|++++|.+..
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCE
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeee
Confidence 555544443344444555555555555555432 13344555555555554432 1233456666666666665
Q ss_pred CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCC
Q 038605 315 IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394 (485)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 394 (485)
++.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+..+..+
T Consensus 220 ~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l 294 (390)
T 3o6n_A 220 VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 294 (390)
T ss_dssp EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCC
T ss_pred cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCC
Confidence 5432 235666666666666543 355666677777777776666656666667777777777776663 34445566
Q ss_pred CCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCC
Q 038605 395 ISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 395 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
++|++|++++|++. .+|..+..+++|++|++++|++.. +| ...+++|+.|++++|||.|+|
T Consensus 295 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC-CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC-chhhccCCEEEcCCCCccchh
Confidence 67777777777666 445556666777777777777653 33 456667777777777777766
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-33 Score=275.74 Aligned_cols=350 Identities=17% Similarity=0.166 Sum_probs=245.5
Q ss_pred ChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcC
Q 038605 21 PREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRL 100 (485)
Q Consensus 21 p~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l 100 (485)
+..++++++|++|+++++.+++ +| .+..+++|++|++++|.+++. + +..+++|++|++++|.+.+.. ...+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~----~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD----VTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC----CTTC
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee----cCCC
Confidence 3457788999999999999985 45 688999999999999998874 3 888999999999999988642 3458
Q ss_pred CCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCC
Q 038605 101 PNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSL 180 (485)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L 180 (485)
++|++|++++|.+.+ ++ +..+++|++|++++|.+++. .++.+++|++|++++|...+. . .+..+++|
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~-----~--~~~~l~~L 172 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITK-----L--DVTPQTQL 172 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCC-----C--CCTTCTTC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccc-----c--ccccCCcC
Confidence 999999999998874 44 78899999999999998864 278889999999999854332 1 36678899
Q ss_pred CEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEecc
Q 038605 181 TLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLE 260 (485)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 260 (485)
+.|++++|.+.+. + +..+ +.|+.|++.+|.+... .+..+++|++|++++|.+.+ +| +..+++|++|+++
T Consensus 173 ~~L~ls~n~l~~l-~---l~~l-~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 173 TTLDCSFNKITEL-D---VSQN-KLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp CEEECCSSCCCCC-C---CTTC-TTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred CEEECCCCcccee-c---cccC-CCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 9999999887652 1 3333 6677777777776654 25667777777777777765 33 6677777777777
Q ss_pred CccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC-CCccccCCCCCcEEEccCCcCCCCC
Q 038605 261 DNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS-IPLTFWNLKDILQLNISSNYFTGPL 339 (485)
Q Consensus 261 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~~~ 339 (485)
+|.+++.. +..+++|+.|+++++. |+.|++++|.+.. +| ...+++|+.|++++|...+..
T Consensus 242 ~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 242 VNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred CCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 77777543 3345555555554442 2333333333222 22 234455555555555433221
Q ss_pred Cc--------cccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccC
Q 038605 340 PL--------EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAI 411 (485)
Q Consensus 340 ~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 411 (485)
+. .+..+++|++|++++|.+++. .+..+++|+.|++++|++++ ++.|+.|++++|.+.+.
T Consensus 303 ~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 303 DCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE- 370 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-
T ss_pred ccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-
Confidence 11 133446778888888887763 26777888888888887763 24556667777777643
Q ss_pred cccccCCCCCCceeCCCCcccccCCCC
Q 038605 412 PASLEKLSYLEDLNLSFNKLEGEIPRG 438 (485)
Q Consensus 412 ~~~l~~l~~L~~L~l~~n~~~~~~p~~ 438 (485)
..+..|+.+++++|+++|.+|..
T Consensus 371 ----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 371 ----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ----ceeeecCccccccCcEEEEcChh
Confidence 34566888899999999999864
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-33 Score=268.83 Aligned_cols=311 Identities=22% Similarity=0.219 Sum_probs=193.4
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccE
Q 038605 26 NLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEE 105 (485)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 105 (485)
.++++++|+++++.+....+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+....+..+. .+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc-CCCCCCE
Confidence 357788888888877754444567788888888888888777777777888888888888877665444333 4777778
Q ss_pred EEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEc
Q 038605 106 LSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIAL 185 (485)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 185 (485)
|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.+++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~l~~L~~L~l 193 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------DLSLIPSLFHANV 193 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--------CGGGCTTCSEEEC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--------ccccccccceeec
Confidence 88777777633333456777777777777777766666677777777777777766553 2344556666666
Q ss_pred cCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCC
Q 038605 186 SNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLE 265 (485)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (485)
++|.+.. +...++|++|++++|.+... +. ...++|+.|++++|.++
T Consensus 194 ~~n~l~~-------------------------------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 194 SYNLLST-------------------------------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLT 239 (390)
T ss_dssp CSSCCSE-------------------------------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCC
T ss_pred ccccccc-------------------------------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCc
Confidence 6554321 11224566666666665422 21 12356666666666665
Q ss_pred CCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccC
Q 038605 266 GSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGN 345 (485)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 345 (485)
+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.++..+..+++|++|++++|++.
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~--------- 308 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--------- 308 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC---------
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce---------
Confidence 32 3455666666666666666555555566666666666666666555544444455555555554443
Q ss_pred CCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 038605 346 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFG 409 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 409 (485)
.++..+..+++|++|++++|+++.. + +..+++|+.|++++|++..
T Consensus 309 ----------------~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 309 ----------------HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp ----------------CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ----------------ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 2233344556666666666666532 2 5556677777777777653
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-33 Score=273.89 Aligned_cols=358 Identities=29% Similarity=0.332 Sum_probs=258.3
Q ss_pred cccCCChhccCCCCC-------------cEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEE
Q 038605 16 QLGEIPREFGNLADL-------------EQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQ 82 (485)
Q Consensus 16 ~~~~lp~~l~~~~~L-------------~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~ 82 (485)
..+.+|..++++++| ++|+++++.+++ +|.. .++|++|++++|.+++ .|.. +++|++|+
T Consensus 46 ~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~ 117 (454)
T 1jl5_A 46 WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLL 117 (454)
T ss_dssp HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEE
Confidence 345889999888764 999999999984 4542 3799999999999986 4543 48999999
Q ss_pred ccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccc
Q 038605 83 LQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLT 162 (485)
Q Consensus 83 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 162 (485)
+++|.+.+... ..++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ .|.. ..+|++|++++|.+.
T Consensus 118 l~~n~l~~l~~-----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~ 186 (454)
T 1jl5_A 118 VDNNNLKALSD-----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE 186 (454)
T ss_dssp CCSSCCSCCCS-----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CCCCccCcccC-----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC
Confidence 99998875321 13799999999999984 67 59999999999999999885 3332 369999999999988
Q ss_pred cCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCC
Q 038605 163 SSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNG 242 (485)
Q Consensus 163 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 242 (485)
..+ .+..+++|+.|++++|.+.+. ...+++++.|++++|.+. .++. +..+++|++|++++|.+.+
T Consensus 187 ~l~-------~~~~l~~L~~L~l~~N~l~~l------~~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 187 ELP-------ELQNLPFLTAIYADNNSLKKL------PDLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp SCC-------CCTTCTTCCEEECCSSCCSSC------CCCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred cCc-------cccCCCCCCEEECCCCcCCcC------CCCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 642 478999999999999988642 223468999999999888 5553 8899999999999999974
Q ss_pred CccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCC
Q 038605 243 SIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNL 322 (485)
Q Consensus 243 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 322 (485)
.+. .+++|++|++++|.+++ .|.. +++|+.|++++|.+.+.. . ..++|+.|++++|.++.++.. .
T Consensus 252 -l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~---~~~~L~~L~l~~N~l~~i~~~---~ 316 (454)
T 1jl5_A 252 -LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E---LPPNLYYLNASSNEIRSLCDL---P 316 (454)
T ss_dssp -CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C---CCTTCCEEECCSSCCSEECCC---C
T ss_pred -ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C---cCCcCCEEECcCCcCCcccCC---c
Confidence 343 34899999999999985 4432 478999999999987532 1 137999999999999986632 2
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccc--cCCccccCC------
Q 038605 323 KDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRG--SIPDSFGDL------ 394 (485)
Q Consensus 323 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~------ 394 (485)
++|++|++++|++.+. +. .+++|++|++++|.+.. +|. .+++|++|++++|++.+ ..|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~l-p~---~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIEL-PA---LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCccccc-cc---cCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 5899999999999863 32 25899999999999984 454 47899999999999987 677777776
Q ss_pred -------CCCCEEeCCCCcccc--cCcccccCCCCCCceeCCCCcccccCC
Q 038605 395 -------ISLKFLNLSNNNLFG--AIPASLEKLSYLEDLNLSFNKLEGEIP 436 (485)
Q Consensus 395 -------~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~p 436 (485)
++|+.|++++|++.+ .+| ++++.|.+.+|.+.+.+|
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYE 433 (454)
T ss_dssp ---------------------------------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccc
Confidence 889999999999985 333 457788899998876655
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2e-32 Score=259.22 Aligned_cols=307 Identities=24% Similarity=0.351 Sum_probs=189.9
Q ss_pred ccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCC
Q 038605 72 IFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNL 151 (485)
Q Consensus 72 l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 151 (485)
+..+++|++|+++++.+.... . ...+++|++|++++|.+.+ ++. +..+++|++|++++|.+... ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~-~--~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ-G--IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT-T--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCccccch-h--hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 446777888888887776432 2 2247788888888877763 333 77777888888877777653 357777777
Q ss_pred cEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCC
Q 038605 152 ERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLT 231 (485)
Q Consensus 152 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 231 (485)
++|++++|.+...+ .+..+++|+.+++++|..... . ..+..+++|+
T Consensus 113 ~~L~l~~n~i~~~~-------~~~~l~~L~~L~l~~n~~~~~--------------------------~-~~~~~l~~L~ 158 (347)
T 4fmz_A 113 RELYLNEDNISDIS-------PLANLTKMYSLNLGANHNLSD--------------------------L-SPLSNMTGLN 158 (347)
T ss_dssp SEEECTTSCCCCCG-------GGTTCTTCCEEECTTCTTCCC--------------------------C-GGGTTCTTCC
T ss_pred CEEECcCCcccCch-------hhccCCceeEEECCCCCCccc--------------------------c-cchhhCCCCc
Confidence 77777777766541 255666666666666643211 1 1245566777
Q ss_pred EEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCc
Q 038605 232 TINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNE 311 (485)
Q Consensus 232 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 311 (485)
+|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|+.|++++|.
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 77777776653322 5566677777777776653322 5666677777777766654322 5666677777777776
Q ss_pred CCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccc
Q 038605 312 LTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSF 391 (485)
Q Consensus 312 l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 391 (485)
++.++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..+..+
T Consensus 233 l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 233 ITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred cCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 666654 55666667777766666542 3455566666666666665542 345556666666666666665555556
Q ss_pred cCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccc
Q 038605 392 GDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 392 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 432 (485)
..+++|++|++++|++.+..+ +..+++|++|++++|+++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 666666666666666654433 555666666666666653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-32 Score=258.21 Aligned_cols=305 Identities=27% Similarity=0.391 Sum_probs=178.1
Q ss_pred CCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcE
Q 038605 50 NLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSI 129 (485)
Q Consensus 50 ~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (485)
.+++|++|+++++.+.+. ..+..+++|++|++++|.+..... +..+++|++|++++|.+.. + ..+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 444555555555544432 124445555555555554443222 2235555555555555442 2 23555555666
Q ss_pred EEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEE
Q 038605 130 LELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIF 209 (485)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 209 (485)
|++++|.+.+..+ +..+++|+.|++++|..... +..+..+++|+.++++++.+....
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~------~~~~~~l~~L~~L~l~~~~~~~~~--------------- 171 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSD------LSPLSNMTGLNYLTVTESKVKDVT--------------- 171 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC------CGGGTTCTTCCEEECCSSCCCCCG---------------
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccc------ccchhhCCCCcEEEecCCCcCCch---------------
Confidence 6665555553322 55566666666666533322 122555556666666555443111
Q ss_pred EcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCc
Q 038605 210 LMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLS 289 (485)
Q Consensus 210 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 289 (485)
.+..+++|++|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+.
T Consensus 172 -------------~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 172 -------------PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp -------------GGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred -------------hhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence 03445566666666665553222 5556666666666666654322 556666666666666665
Q ss_pred ccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccC
Q 038605 290 GSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGG 369 (485)
Q Consensus 290 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 369 (485)
...+ +..+++|++|++++|.++.++ .+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..
T Consensus 235 ~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 235 DLSP--LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred CCcc--hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 4332 666677777777777776664 456677777777777777653 35677788888888888887777777888
Q ss_pred CCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCccc
Q 038605 370 LKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 370 l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
+++|++|++++|++++..+ +..+++|++|++++|.++
T Consensus 310 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888888875444 777888888888888765
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.4e-33 Score=260.74 Aligned_cols=256 Identities=32% Similarity=0.549 Sum_probs=236.4
Q ss_pred ccccEEEcccccCCc--CcchhhhcCCCCCEEEcCC-CcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCE
Q 038605 204 HSLEIFLMYNCNISG--GISEEISNLTNLTTINLGG-NKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYE 280 (485)
Q Consensus 204 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 280 (485)
.+++.|++.++.+.. .++..+..+++|++|++++ +.+.+..|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 567888888888877 6788899999999999995 8888888989999999999999999999888999999999999
Q ss_pred EEccCCcCcccccccccCCCCCcEEeCCCCcCC-CCCccccCCC-CCcEEEccCCcCCCCCCccccCCCCCCeEEccCCc
Q 038605 281 LELGGNKLSGSIPACFGNLIALRILSLGSNELT-SIPLTFWNLK-DILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNN 358 (485)
Q Consensus 281 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 358 (485)
|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+.+..+..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999888889999999999999999998 5888888888 999999999999988888888887 9999999999
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC
Q 038605 359 FSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG 438 (485)
Q Consensus 359 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 438 (485)
+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988899999999999999999999855554 888999999999999999899999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCccCCCCC
Q 038605 439 GSFGNFSAESFEGNELLCGSPNL 461 (485)
Q Consensus 439 ~~~~~L~~l~l~~np~~c~~p~~ 461 (485)
..+++|+.+++.+||++|+.|..
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSS
T ss_pred ccccccChHHhcCCCCccCCCCC
Confidence 99999999999999999997654
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-32 Score=267.00 Aligned_cols=353 Identities=20% Similarity=0.189 Sum_probs=248.3
Q ss_pred cccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccc
Q 038605 39 NLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIP 118 (485)
Q Consensus 39 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 118 (485)
......+..+.++++|++|++++|.+++. | .+..+++|++|++++|.+.+.. ...+++|++|++++|.+.+. +
T Consensus 29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC-C
T ss_pred CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCcee-e
Confidence 33334455678899999999999999865 4 6889999999999999988642 34589999999999998853 3
Q ss_pred hhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccc
Q 038605 119 RFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTS 198 (485)
Q Consensus 119 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 198 (485)
+..+++|++|++++|.+.+. + ++.+++|++|++++|.+... .+..+++|+.|++++|...+...
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l--------~l~~l~~L~~L~l~~n~~~~~~~--- 165 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI--------DVSHNTQLTELDCHLNKKITKLD--- 165 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC--------CCTTCTTCCEEECTTCSCCCCCC---
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee--------ccccCCcCCEEECCCCCcccccc---
Confidence 78899999999999998864 2 88899999999999988764 26678899999999886543331
Q ss_pred cccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCC
Q 038605 199 VGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDEL 278 (485)
Q Consensus 199 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 278 (485)
+..+ ++|+.|++++|.+... + +..+++|++|++++|.+.+. .+..+++|++|++++|.+++ .| +..+++|
T Consensus 166 ~~~l-~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L 235 (457)
T 3bz5_A 166 VTPQ-TQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL 235 (457)
T ss_dssp CTTC-TTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred cccC-CcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence 2222 5566666666665542 2 45556666666666666533 25555666666666666654 23 5556666
Q ss_pred CEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCc
Q 038605 279 YELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNN 358 (485)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 358 (485)
+.|++++|.+.+.. +..+++|+.|+++++ +|+.+++++|...+..+ +..+++|+.|++++|.
T Consensus 236 ~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 236 TYFDCSVNPLTELD---VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp SEEECCSSCCSCCC---CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred CEEEeeCCcCCCcC---HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 66666666655432 344555666655443 34555566666554432 4578999999999997
Q ss_pred ccccCcc--------cccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCc
Q 038605 359 FSGVIPT--------EIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNK 430 (485)
Q Consensus 359 ~~~~~~~--------~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 430 (485)
..+.+|. .+.++++|++|++++|++++. .+..+++|+.|++++|++.+ ++.|..|++++|.
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~ 366 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNN 366 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTS
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCc
Confidence 6544332 255677888999999988853 37888889999999988874 3567778888888
Q ss_pred ccccCCCCCCCCCCCcccccCCCCccCC
Q 038605 431 LEGEIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 431 ~~~~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
+.+. ..+..|+.++++.|. +.|.
T Consensus 367 l~g~----~~~~~l~~l~l~~N~-l~g~ 389 (457)
T 3bz5_A 367 FEAE----GQTITMPKETLTNNS-LTIA 389 (457)
T ss_dssp EEEE----EEEEECCCBCCBTTB-EEEE
T ss_pred EEec----ceeeecCccccccCc-EEEE
Confidence 8765 356677888888886 4544
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-32 Score=277.46 Aligned_cols=312 Identities=21% Similarity=0.248 Sum_probs=153.2
Q ss_pred CCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEE
Q 038605 75 VSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERL 154 (485)
Q Consensus 75 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 154 (485)
+.+++.++++++.+.......+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHH-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHc-cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 45566666666665543333322 36666666666666654444556666666666666666665555555566666666
Q ss_pred EccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEE
Q 038605 155 NLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTIN 234 (485)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 234 (485)
++++|.+...++ ..|..+++|+.|++++|.+. ...+..+..+++|++|+
T Consensus 129 ~L~~n~l~~l~~-----~~~~~l~~L~~L~Ls~N~l~--------------------------~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 129 VLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLE--------------------------RIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp ECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC--------------------------BCCTTTTTTCTTCCEEE
T ss_pred EeeCCCCCCCCH-----HHhccCCCCCEEEeeCCcCC--------------------------CCChhhhhcCCcCcEEE
Confidence 666665554322 12334444444444444332 12223344455555555
Q ss_pred cCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC
Q 038605 235 LGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS 314 (485)
Q Consensus 235 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 314 (485)
+++|.+.+. .+..+++|+.|++++|.+.+ +...++|+.|++++| .+..
T Consensus 178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n------------------------~l~~ 225 (597)
T 3oja_B 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN------------------------SINV 225 (597)
T ss_dssp CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSS------------------------CCCE
T ss_pred CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCC------------------------cccc
Confidence 555555432 12334455555555544432 122334445555544 4444
Q ss_pred CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCC
Q 038605 315 IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDL 394 (485)
Q Consensus 315 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 394 (485)
++..+ .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++ ++..+..+
T Consensus 226 ~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l 300 (597)
T 3oja_B 226 VRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPI 300 (597)
T ss_dssp EECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCC
T ss_pred ccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccC
Confidence 33221 23455555555554432 334445555555555555554444455555555555555555542 23333445
Q ss_pred CCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCC
Q 038605 395 ISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 395 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
++|+.|++++|.+. .+|..+..+++|++|++++|++.+. | ...++.|+.|++++|||.|.|
T Consensus 301 ~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence 55555555555554 3444444455555555555555422 1 344455555555555555544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-32 Score=275.97 Aligned_cols=309 Identities=20% Similarity=0.202 Sum_probs=189.8
Q ss_pred CCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccE
Q 038605 26 NLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEE 105 (485)
Q Consensus 26 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 105 (485)
.+.+++.++++++.+....+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+....+..+. .+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ-NVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc-CCCCCCE
Confidence 356778888888887755555567788888888888888777777788888888888888887765544433 4788888
Q ss_pred EEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEc
Q 038605 106 LSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIAL 185 (485)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 185 (485)
|++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+... .+..+++|+.+++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~l~~L~~L~l 199 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------DLSLIPSLFHANV 199 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--------CGGGCTTCSEEEC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--------Chhhhhhhhhhhc
Confidence 88888877744444457778888888888877777777777778888888887777654 2345566777777
Q ss_pred cCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCC
Q 038605 186 SNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLE 265 (485)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 265 (485)
++|.+.. +...++|+.|++++|.+... +.. ..++|+.|++++|.++
T Consensus 200 ~~n~l~~-------------------------------l~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 200 SYNLLST-------------------------------LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT 245 (597)
T ss_dssp CSSCCSE-------------------------------EECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEECCSSCCC
T ss_pred ccCcccc-------------------------------ccCCchhheeeccCCccccc-ccc--cCCCCCEEECCCCCCC
Confidence 6665432 11223455556655555422 111 1245666666666655
Q ss_pred CCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccC
Q 038605 266 GSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGN 345 (485)
Q Consensus 266 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 345 (485)
+ +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. ..+..+..
T Consensus 246 ~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~ 322 (597)
T 3oja_B 246 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322 (597)
T ss_dssp C--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHH
T ss_pred C--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCccccc
Confidence 3 24455666666666666666555555566666666666666666655554445555555555555554 22333344
Q ss_pred CCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcc
Q 038605 346 LKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 383 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 383 (485)
+++|++|++++|.+.+.. +..+++|+.|++++|++
T Consensus 323 l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCE
T ss_pred CCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCC
Confidence 444444444444443221 33344444444444443
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2e-35 Score=291.18 Aligned_cols=358 Identities=20% Similarity=0.154 Sum_probs=183.6
Q ss_pred CCCcEEEccCCcccccCCc-CCCCCCCCCEEeccCccceec----CCccccCCCCCCEEEccCCccccccchhhhhcCC-
Q 038605 28 ADLEQMSLWENNLRGEIPL-EIGNLQNLEELDLRQNKLVGI----VPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLP- 101 (485)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~i~~~----~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~- 101 (485)
++|++|+++++.++..... .+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+.........++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4567788887777643332 256777888888888777642 3455667777888888777776544433433344
Q ss_pred ---CccEEEccCccccc----ccchhhhcCCCCcEEEccCcccccccchhcc-----CCCCCcEEEccCCccccCCCCcc
Q 038605 102 ---NLEELSLWGNNFNG----TIPRFIFNASKLSILELVGNSFSGFIPNTFG-----NLRNLERLNLQDNYLTSSTPELS 169 (485)
Q Consensus 102 ---~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~~ 169 (485)
+|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+.......
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~- 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP- 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH-
Confidence 57777777777663 3456666777777777777766544333222 2345666666666555431100
Q ss_pred ccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhh-hcCCCCCEEEcCCCcCCCC----c
Q 038605 170 FLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEI-SNLTNLTTINLGGNKLNGS----I 244 (485)
Q Consensus 170 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~----~ 244 (485)
.+..+..+++|+.|++++|.+..... . .+...+ ...++|++|++++|.+.+. +
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~----~------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGV----R------------------VLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHH----H------------------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHH----H------------------HHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 12234444555555555554321100 0 001111 1245667777777766532 2
Q ss_pred cccccCCCCCCeEeccCccCCCCC-----CcccCCCCCCCEEEccCCcCccc----ccccccCCCCCcEEeCCCCcCCCC
Q 038605 245 PIALGKLQKLQYLGLEDNKLEGSI-----PDDICRLDELYELELGGNKLSGS----IPACFGNLIALRILSLGSNELTSI 315 (485)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~ 315 (485)
+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+... .+..+..+++|++|++++|.+++.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 344455666666666666654321 11122355666666666655532 233344455666666666655431
Q ss_pred -----Cccc-cCCCCCcEEEccCCcCCCCC----CccccCCCCCCeEEccCCcccccCcccccC-----CCCCCEEECCC
Q 038605 316 -----PLTF-WNLKDILQLNISSNYFTGPL----PLEIGNLKVLIGIDFSMNNFSGVIPTEIGG-----LKNLEYLFLGY 380 (485)
Q Consensus 316 -----~~~~-~~~~~L~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~ 380 (485)
...+ ...++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 1111 11235555555555554331 122333445555555555444332222211 34455555555
Q ss_pred Ccccc----cCCccccCCCCCCEEeCCCCccc
Q 038605 381 NRLRG----SIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 381 ~~l~~----~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
|.+++ .++..+..+++|++|++++|++.
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 54443 23333444444555555544443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.1e-30 Score=245.49 Aligned_cols=266 Identities=25% Similarity=0.327 Sum_probs=163.4
Q ss_pred cccccCCChhccCC------CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 14 TFQLGEIPREFGNL------ADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 14 ~~~~~~lp~~l~~~------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
...++++|..+... .++++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 13 ~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 89 (332)
T 2ft3_A 13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89 (332)
T ss_dssp ------------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc
Confidence 34567777765443 36888888888887 5565443 688888888888887777788888888888888888
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPE 167 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 167 (485)
+....+..+. .+++|++|++++|.+. .+|..+. ++|++|++++|.+....+..|..+++|+.|++++|.+...+.
T Consensus 90 l~~~~~~~~~-~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 164 (332)
T 2ft3_A 90 ISKIHEKAFS-PLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF- 164 (332)
T ss_dssp CCEECGGGST-TCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-
T ss_pred cCccCHhHhh-CcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-
Confidence 7765444443 4777888888777776 4444333 567777777766665555556666666666666665543110
Q ss_pred ccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCcccc
Q 038605 168 LSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIA 247 (485)
Q Consensus 168 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 247 (485)
.+.. +..+ +|++|++++|.+.+ .+..
T Consensus 165 --~~~~--------------------------------------------------~~~l-~L~~L~l~~n~l~~-l~~~ 190 (332)
T 2ft3_A 165 --EPGA--------------------------------------------------FDGL-KLNYLRISEAKLTG-IPKD 190 (332)
T ss_dssp --CTTS--------------------------------------------------SCSC-CCSCCBCCSSBCSS-CCSS
T ss_pred --Cccc--------------------------------------------------ccCC-ccCEEECcCCCCCc-cCcc
Confidence 0111 2222 45555555555542 2222
Q ss_pred ccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcE
Q 038605 248 LGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQ 327 (485)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 327 (485)
+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++
T Consensus 191 ~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~ 268 (332)
T 2ft3_A 191 L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268 (332)
T ss_dssp S--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCE
T ss_pred c--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCE
Confidence 2 15666667777766665556666677777777777766655555666777777777777777777766666777777
Q ss_pred EEccCCcCCCCCCccc
Q 038605 328 LNISSNYFTGPLPLEI 343 (485)
Q Consensus 328 L~l~~~~l~~~~~~~~ 343 (485)
|++++|++++.....+
T Consensus 269 L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 269 VYLHTNNITKVGVNDF 284 (332)
T ss_dssp EECCSSCCCBCCTTSS
T ss_pred EECCCCCCCccChhHc
Confidence 7777777665444333
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.1e-30 Score=239.38 Aligned_cols=296 Identities=22% Similarity=0.222 Sum_probs=179.8
Q ss_pred CCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEc
Q 038605 29 DLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSL 108 (485)
Q Consensus 29 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l 108 (485)
++++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....+..+. .+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA-PLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc-CCCCCCEEEC
Confidence 6777777777776 4554443 5677777777777766666677777777777777776654444333 3667777777
Q ss_pred cCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCC
Q 038605 109 WGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNN 188 (485)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 188 (485)
++|.+. .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+...+
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------- 161 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG----------------------- 161 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-----------------------
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC-----------------------
Confidence 777665 3443332 56666666666666555555666666666666655543210
Q ss_pred CCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCC
Q 038605 189 PLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSI 268 (485)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 268 (485)
..+..+..+++|++|++++|.+.. .+..+ .++|++|++++|.+++..
T Consensus 162 ------------------------------~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 162 ------------------------------IENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVD 208 (330)
T ss_dssp ------------------------------BCTTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEEC
T ss_pred ------------------------------cChhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccC
Confidence 011224445566666666666552 23222 256777777777777666
Q ss_pred CcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCC
Q 038605 269 PDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKV 348 (485)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 348 (485)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++|++++|++++.....|....
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~- 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG- 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS-
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcc-
Confidence 6677777777777777777776555567777888888888888887777777778888888888877755444432210
Q ss_pred CCeEEccCCcccccCcccccCCCCCCEEECCCCcccc--cCCccccCCCCCCEEeCCCC
Q 038605 349 LIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRG--SIPDSFGDLISLKFLNLSNN 405 (485)
Q Consensus 349 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~ 405 (485)
.....+.++.|++++|++.. ..+..|..+.+++.+++++|
T Consensus 288 -----------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 288 -----------------YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -----------------CCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -----------------cccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 00112445555555555432 33344555555555555554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.8e-29 Score=234.08 Aligned_cols=249 Identities=22% Similarity=0.270 Sum_probs=184.7
Q ss_pred ccccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 7 RTSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
...++|.+..+..+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 4457788889999998874 69999999999999777778999999999999999999888999999999999999999
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCccccc--ccchhccCCCCCcEEEccCCccccC
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSG--FIPNTFGNLRNLERLNLQDNYLTSS 164 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 164 (485)
.+..... .. .++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+...
T Consensus 111 ~l~~l~~-~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 111 QLKELPE-KM---PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp CCSBCCS-SC---CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred cCCccCh-hh---cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 9875333 22 4799999999999987777789999999999999998864 5667788899999999998887654
Q ss_pred CCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCc
Q 038605 165 TPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSI 244 (485)
Q Consensus 165 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 244 (485)
+.. + .++|+.|++++|.+ ....+..+..+++|++|++++|.+.+..
T Consensus 187 ~~~------~--~~~L~~L~l~~n~l--------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 187 PQG------L--PPSLTELHLDGNKI--------------------------TKVDAASLKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CSS------C--CTTCSEEECTTSCC--------------------------CEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred Ccc------c--cccCCEEECCCCcC--------------------------CccCHHHhcCCCCCCEEECCCCcCceeC
Confidence 321 1 14444444444433 3233344556666667777666666544
Q ss_pred cccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccc
Q 038605 245 PIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACF 296 (485)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 296 (485)
+..+..+++|++|++++|.++ ..|..+..+++|++|++++|.+.+.....|
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 445566666666666666665 445556666666666666666654433333
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6e-29 Score=233.58 Aligned_cols=287 Identities=25% Similarity=0.309 Sum_probs=139.2
Q ss_pred CCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEc
Q 038605 77 TLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNL 156 (485)
Q Consensus 77 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 156 (485)
+++.++++++.+.... ... .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip-~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-KEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCC-SCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccC-CCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666655322 221 346666666666665444555666666666666666666555555666666666666
Q ss_pred cCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcC
Q 038605 157 QDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLG 236 (485)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 236 (485)
++|.+...+.. +. ++|+.|++++|. +....+..+..+++|++|+++
T Consensus 110 ~~n~l~~l~~~------~~--~~L~~L~l~~n~--------------------------i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 110 SKNHLVEIPPN------LP--SSLVELRIHDNR--------------------------IRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CSSCCCSCCSS------CC--TTCCEEECCSSC--------------------------CCCCCSGGGSSCSSCCEEECC
T ss_pred CCCcCCccCcc------cc--ccCCEEECCCCc--------------------------cCccCHhHhCCCccCCEEECC
Confidence 66555433211 00 233333333322 222222234444555555555
Q ss_pred CCcCCC--CccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC
Q 038605 237 GNKLNG--SIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS 314 (485)
Q Consensus 237 ~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 314 (485)
+|.+.. ..+..+..+ +|++|++++|.+++ .|..+ .++|+.|++++|.++.
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~--------------------------~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL--------------------------PETLNELHLDHNKIQA 207 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS--------------------------CSSCSCCBCCSSCCCC
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc--------------------------cCCCCEEECCCCcCCc
Confidence 554431 222333333 44444444444432 12111 1344444444444444
Q ss_pred CC-ccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccC
Q 038605 315 IP-LTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGD 393 (485)
Q Consensus 315 ~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 393 (485)
++ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|+++...+..|..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence 33 23444445555555555554444444555555555555555555 34444555566666666666655444444433
Q ss_pred ------CCCCCEEeCCCCccc--ccCcccccCCCCCCceeCCCCc
Q 038605 394 ------LISLKFLNLSNNNLF--GAIPASLEKLSYLEDLNLSFNK 430 (485)
Q Consensus 394 ------~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~ 430 (485)
.+.|+.|++++|++. ...+..+..+++|+.+++++|+
T Consensus 287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 245666666666554 3455556666666666666553
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-32 Score=271.63 Aligned_cols=379 Identities=18% Similarity=0.166 Sum_probs=259.2
Q ss_pred CCCCEEeccCccceecCCcc-ccCCCCCCEEEccCCccccccc---hhhhhcCCCccEEEccCcccccccchhhh-cCC-
Q 038605 52 QNLEELDLRQNKLVGIVPAA-IFNVSTLKLLQLQNNSLLGCLS---SIADVRLPNLEELSLWGNNFNGTIPRFIF-NAS- 125 (485)
Q Consensus 52 ~~L~~L~L~~~~i~~~~~~~-l~~l~~L~~L~L~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~- 125 (485)
++|++|+++++.+++..... +..+++|++|++++|.+..... ......+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46777888877776543332 5667778888888777653211 11222367777777777776543333332 344
Q ss_pred ---CCcEEEccCccccc----ccchhccCCCCCcEEEccCCccccCCCCcccccc-ccCCCCCCEEEccCCCCCCcCCcc
Q 038605 126 ---KLSILELVGNSFSG----FIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSS-LSNCKSLTLIALSNNPLDGNLRKT 197 (485)
Q Consensus 126 ---~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~ 197 (485)
+|++|++++|.++. ..+..+..+++|++|++++|.+....... +... ....++|+.|++++|.+.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 57777777776663 33556666777777777777654321100 0011 1123345555555544332110
Q ss_pred ccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCcccccc-----CCCCCCeEeccCccCCCC----C
Q 038605 198 SVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALG-----KLQKLQYLGLEDNKLEGS----I 268 (485)
Q Consensus 198 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~----~ 268 (485)
..++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. .
T Consensus 160 --------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 219 (461)
T 1z7x_W 160 --------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219 (461)
T ss_dssp --------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred --------------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence 02345567789999999999998644333332 366999999999999864 3
Q ss_pred CcccCCCCCCCEEEccCCcCccccc-----ccccCCCCCcEEeCCCCcCCC-----CCccccCCCCCcEEEccCCcCCCC
Q 038605 269 PDDICRLDELYELELGGNKLSGSIP-----ACFGNLIALRILSLGSNELTS-----IPLTFWNLKDILQLNISSNYFTGP 338 (485)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~ 338 (485)
+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.++. ++..+..+++|++|++++|.+.+.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 5667788999999999998875432 223468999999999999988 666777789999999999998754
Q ss_pred CCcccc-----CCCCCCeEEccCCccccc----CcccccCCCCCCEEECCCCcccccCCccccC-----CCCCCEEeCCC
Q 038605 339 LPLEIG-----NLKVLIGIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLRGSIPDSFGD-----LISLKFLNLSN 404 (485)
Q Consensus 339 ~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~ 404 (485)
....+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 333333 236999999999998865 4556778899999999999988654444432 67999999999
Q ss_pred Ccccc----cCcccccCCCCCCceeCCCCccccc--------CCCCCCCCCCCcccccCCCCc
Q 038605 405 NNLFG----AIPASLEKLSYLEDLNLSFNKLEGE--------IPRGGSFGNFSAESFEGNELL 455 (485)
Q Consensus 405 ~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~--------~p~~~~~~~L~~l~l~~np~~ 455 (485)
|.+.+ .++..+..+++|++|++++|++... +| .....|+.|.+.++.+-
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~--~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR--QPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT--STTCCCCEEECTTCCCC
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc--cCCcchhheeecccccC
Confidence 99986 6788888899999999999998743 33 23456777777776643
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.5e-32 Score=275.18 Aligned_cols=425 Identities=13% Similarity=0.064 Sum_probs=296.4
Q ss_pred CChhccCCCCCcEEEccCCccc---ccCCcCCC------------CCCCCCEEeccCccceecCCccccC-CCC-CCEEE
Q 038605 20 IPREFGNLADLEQMSLWENNLR---GEIPLEIG------------NLQNLEELDLRQNKLVGIVPAAIFN-VST-LKLLQ 82 (485)
Q Consensus 20 lp~~l~~~~~L~~L~l~~~~~~---~~~~~~~~------------~l~~L~~L~L~~~~i~~~~~~~l~~-l~~-L~~L~ 82 (485)
.+..+.++++|++|+++++... +..|..++ .+++|++|+|++|.+++..+..+.. ++. |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 3445788999999999886532 22333333 6899999999999887665555555 444 99999
Q ss_pred ccCCcc-ccccchhhhhcCCCccEEEccCcccccc----cchhhhcCCCCcEEEccCcccc----cccchhccCCCCCcE
Q 038605 83 LQNNSL-LGCLSSIADVRLPNLEELSLWGNNFNGT----IPRFIFNASKLSILELVGNSFS----GFIPNTFGNLRNLER 153 (485)
Q Consensus 83 L~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~ 153 (485)
+++|.. ...........+++|++|++++|.+.+. ++.....+++|++|+++++.+. ...+..+.++++|+.
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 999872 2222222333589999999999987655 4445678899999999999886 344555678899999
Q ss_pred EEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCc--CCccccccccccccEEEcccccCCcCcchhhhcCCCCC
Q 038605 154 LNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGN--LRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLT 231 (485)
Q Consensus 154 L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 231 (485)
|++++|.+... +..+..+++|+.+.++....... .....+.. +++++.+.+..+. ...++..+..+++|+
T Consensus 225 L~L~~~~~~~l------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~-~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 225 VKVGDFEILEL------VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF-PRKLCRLGLSYMG-PNEMPILFPFAAQIR 296 (592)
T ss_dssp EECSSCBGGGG------HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC-CTTCCEEEETTCC-TTTGGGGGGGGGGCC
T ss_pred EeccCccHHHH------HHHHhhhhHHHhhcccccccccchHHHHHHhhc-cccccccCccccc-hhHHHHHHhhcCCCc
Confidence 99999887653 35677889999999986432211 11122233 3789999988753 335666778889999
Q ss_pred EEEcCCCcCCCCcc-ccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccC-----------CcCcccccc-cccC
Q 038605 232 TINLGGNKLNGSIP-IALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGG-----------NKLSGSIPA-CFGN 298 (485)
Q Consensus 232 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~-~~~~ 298 (485)
+|++++|.+.+... ..+..+++|++|+++++......+..+..+++|++|++++ +.++..... ....
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 99999998753322 3467899999999994322222233345678999999994 344433222 2456
Q ss_pred CCCCcEEeCCCCcCCC-CCcccc-CCCCCcEEEcc----CCcCCCCC-----CccccCCCCCCeEEccCCc--ccccCcc
Q 038605 299 LIALRILSLGSNELTS-IPLTFW-NLKDILQLNIS----SNYFTGPL-----PLEIGNLKVLIGIDFSMNN--FSGVIPT 365 (485)
Q Consensus 299 ~~~L~~L~l~~~~l~~-~~~~~~-~~~~L~~L~l~----~~~l~~~~-----~~~~~~~~~L~~L~l~~~~--~~~~~~~ 365 (485)
+++|+.|+++.+.++. .+..+. .+++|+.|+++ .+.+++.. ...+..+++|++|+++.|. +++..+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 8999999998888876 222333 37899999996 55666432 1225678999999997654 5544433
Q ss_pred cc-cCCCCCCEEECCCCccccc-CCccccCCCCCCEEeCCCCccccc-CcccccCCCCCCceeCCCCcccccCCC--CCC
Q 038605 366 EI-GGLKNLEYLFLGYNRLRGS-IPDSFGDLISLKFLNLSNNNLFGA-IPASLEKLSYLEDLNLSFNKLEGEIPR--GGS 440 (485)
Q Consensus 366 ~~-~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~--~~~ 440 (485)
.+ ..+++|++|++++|++++. .+..+..+++|++|++++|.+++. ++.....+++|++|++++|+++..-.. ...
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~ 536 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMA 536 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHh
Confidence 33 3589999999999998753 344457789999999999998754 344456789999999999998643111 145
Q ss_pred CCCCCcccccCC
Q 038605 441 FGNFSAESFEGN 452 (485)
Q Consensus 441 ~~~L~~l~l~~n 452 (485)
+|.+....+..+
T Consensus 537 ~p~l~~~~~~~~ 548 (592)
T 3ogk_B 537 RPYWNIELIPSR 548 (592)
T ss_dssp CTTEEEEEECCC
T ss_pred CCCcEEEEecCc
Confidence 666666555543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=8e-29 Score=230.19 Aligned_cols=226 Identities=30% Similarity=0.454 Sum_probs=193.1
Q ss_pred ccccEEEccc-ccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEE
Q 038605 204 HSLEIFLMYN-CNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELE 282 (485)
Q Consensus 204 ~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (485)
++|+.|++++ +.+....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 4444444442 444445666788889999999999988877888888899999999999999888888899999999999
Q ss_pred ccCCcCcccccccccCCC-CCcEEeCCCCcCCC-CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCccc
Q 038605 283 LGGNKLSGSIPACFGNLI-ALRILSLGSNELTS-IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFS 360 (485)
Q Consensus 283 l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (485)
+++|.+.+..+..+..++ +|+.|++++|.++. +|..+..+. |++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 999998877788888887 89999999999884 777777776 999999999998888888899999999999999998
Q ss_pred ccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccc
Q 038605 361 GVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 361 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 432 (485)
+..+. +..+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|.. ..+++|+.+++++|+..
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 66554 788899999999999999889999999999999999999999888876 78999999999999954
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.3e-27 Score=234.06 Aligned_cols=230 Identities=24% Similarity=0.229 Sum_probs=184.8
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (485)
+++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57788888888887666677778888888888888887777777888888888888888887666666778888888888
Q ss_pred CCCcCCCCCc-cccCCCCCcEEEccCCc-CCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccc
Q 038605 308 GSNELTSIPL-TFWNLKDILQLNISSNY-FTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRG 385 (485)
Q Consensus 308 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 385 (485)
++|.++.++. .+..+++|++|++++|+ +.......+..+++|++|++++|.+.+. + .+..+++|++|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 8888887655 56778888888888744 4434444677888888888888888753 3 47788899999999999987
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCC
Q 038605 386 SIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSP 459 (485)
Q Consensus 386 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p 459 (485)
..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+.. ..+++|+.|++++|||.|+|.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 77888899999999999999998888888888999999999999987444443 678899999999999999994
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=232.86 Aligned_cols=230 Identities=23% Similarity=0.247 Sum_probs=185.6
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (485)
++++.|++++|.+....+..+..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57788888888877666667778888888888888887766677888888888888888887666667788888888888
Q ss_pred CCCcCCCCCc-cccCCCCCcEEEccCCc-CCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccc
Q 038605 308 GSNELTSIPL-TFWNLKDILQLNISSNY-FTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRG 385 (485)
Q Consensus 308 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~ 385 (485)
++|.++.++. .+..+++|++|++++|+ +.......+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 8888887654 56778888888888754 443444567788888888888888874 33 47788899999999999988
Q ss_pred cCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCC
Q 038605 386 SIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSP 459 (485)
Q Consensus 386 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p 459 (485)
..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|++++..+.. ..+++|+.|++++|||.|+|.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 77888999999999999999998888888889999999999999998544443 778999999999999999994
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-27 Score=222.45 Aligned_cols=232 Identities=24% Similarity=0.308 Sum_probs=193.1
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCC--CCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEE
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGS--IPDDICRLDELYELELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
+++++|++++|.+....+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.. .+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEE
Confidence 5788888888888754445577888888888888887633 24556678889999999988773 45567888999999
Q ss_pred eCCCCcCCCCCc--cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccc-cCcccccCCCCCCEEECCCCc
Q 038605 306 SLGSNELTSIPL--TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSG-VIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 306 ~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~ 382 (485)
++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 999998888764 67788999999999999887777778889999999999999876 567788899999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCC-CCCCcccccCCCCccCCCC
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSF-GNFSAESFEGNELLCGSPN 460 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~-~~L~~l~l~~np~~c~~p~ 460 (485)
+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|.. ..+ ++|+.|++++||+.|+|+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 98777888999999999999999998777778888999999999999998877754 555 5899999999999999843
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=233.23 Aligned_cols=259 Identities=20% Similarity=0.218 Sum_probs=204.3
Q ss_pred ccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEc
Q 038605 204 HSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELEL 283 (485)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (485)
++++.|+++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 45666666666666555556788889999999999888666677888899999999999888655555888899999999
Q ss_pred cCCcCccccc-ccccCCCCCcEEeCCCC-cCCCC-CccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCccc
Q 038605 284 GGNKLSGSIP-ACFGNLIALRILSLGSN-ELTSI-PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFS 360 (485)
Q Consensus 284 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 360 (485)
++|.+..... ..+..+++|+.|++++| .+..+ +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9998875544 46788899999999988 46665 446778889999999999988777788888899999999999886
Q ss_pred ccCcccccCCCCCCEEECCCCcccccCCccc---cCCCCCCEEeCCCCcccc----cCcccccCCCCCCceeCCCCcccc
Q 038605 361 GVIPTEIGGLKNLEYLFLGYNRLRGSIPDSF---GDLISLKFLNLSNNNLFG----AIPASLEKLSYLEDLNLSFNKLEG 433 (485)
Q Consensus 361 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~ 433 (485)
......+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~- 290 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-
Confidence 5444445568899999999999886544333 236678888888888764 36677889999999999999998
Q ss_pred cCCCC--CCCCCCCcccccCCCCccCCCCCCc
Q 038605 434 EIPRG--GSFGNFSAESFEGNELLCGSPNLQY 463 (485)
Q Consensus 434 ~~p~~--~~~~~L~~l~l~~np~~c~~p~~~~ 463 (485)
.+|.. ..+++|+.+++++||+.|+||...|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~ 322 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 322 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCCCcHH
Confidence 66653 7899999999999999999975443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=6.3e-27 Score=214.90 Aligned_cols=207 Identities=24% Similarity=0.230 Sum_probs=109.1
Q ss_pred CCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCc-CCCC-CccccCCCCCcEEE
Q 038605 252 QKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNE-LTSI-PLTFWNLKDILQLN 329 (485)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~-~~~~~~~~~L~~L~ 329 (485)
+++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +..+ +..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455555555555554444445555555555555555544444445555555555555554 4443 33444555555555
Q ss_pred ccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 038605 330 ISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFG 409 (485)
Q Consensus 330 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 409 (485)
+++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555554444445555555555555555554444445555555555555555554444445555555555555555555
Q ss_pred cCcccccCCCCCCceeCCCCcccccCCC-CCCCCCCCcccccCCCCccCC
Q 038605 410 AIPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 410 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~L~~l~l~~np~~c~~ 458 (485)
..+..+..+++|++|++++|++.+..+. ...+++|+.+++++||+.|+|
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 5555555555555555555555532222 245555555555555555555
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.1e-29 Score=258.12 Aligned_cols=399 Identities=13% Similarity=0.048 Sum_probs=285.3
Q ss_pred cCCCCCcEEEccCCcccccCCcCCCC-CCC-CCEEeccCcc-ceec-CCccccCCCCCCEEEccCCccccccch---hhh
Q 038605 25 GNLADLEQMSLWENNLRGEIPLEIGN-LQN-LEELDLRQNK-LVGI-VPAAIFNVSTLKLLQLQNNSLLGCLSS---IAD 97 (485)
Q Consensus 25 ~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~L~~~~-i~~~-~~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~ 97 (485)
..+++|++|+|+++.+++..+..+.. ++. |++|++++|. ++.. .+....++++|++|++++|.+.+.... ...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 37899999999999887655555554 445 9999999986 3221 222335799999999999987654322 233
Q ss_pred hcCCCccEEEccCcccc----cccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCcccccc
Q 038605 98 VRLPNLEELSLWGNNFN----GTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSS 173 (485)
Q Consensus 98 ~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 173 (485)
..+++|++|+++++.+. ..++..+.++++|++|++++|.+.+ .+..+..+++|++|++++........ .....
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~ 265 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMP--EKYMN 265 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCT--TSSSC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchH--HHHHH
Confidence 45999999999999886 3455666789999999999998875 56778899999999998643221111 13456
Q ss_pred ccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcc-hhhhcCCCCCEEEcCCCcCCCCccccccCCC
Q 038605 174 LSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGIS-EEISNLTNLTTINLGGNKLNGSIPIALGKLQ 252 (485)
Q Consensus 174 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 252 (485)
+..+++|+.+.++++... .. ..+....++|+.|++++|.+..... ..+..+++|++|+++++......+.....++
T Consensus 266 l~~~~~L~~L~l~~~~~~--~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN--EM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp CCCCTTCCEEEETTCCTT--TG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred hhccccccccCccccchh--HH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 788899999999875322 11 2222334799999999998654433 4468899999999984322222334446789
Q ss_pred CCCeEeccC-----------ccCCCCCC-cccCCCCCCCEEEccCCcCcccccccccC-CCCCcEEeCC----CCcCCCC
Q 038605 253 KLQYLGLED-----------NKLEGSIP-DDICRLDELYELELGGNKLSGSIPACFGN-LIALRILSLG----SNELTSI 315 (485)
Q Consensus 253 ~L~~L~l~~-----------~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~l~~~ 315 (485)
+|++|++++ +.+++... .....+++|++|+++.+.+++.....+.. +++|+.|+++ .+.++..
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 999999994 34443212 22345899999999888887665555554 8999999996 5567764
Q ss_pred C------ccccCCCCCcEEEccCCc--CCCCCCcccc-CCCCCCeEEccCCccccc-CcccccCCCCCCEEECCCCcccc
Q 038605 316 P------LTFWNLKDILQLNISSNY--FTGPLPLEIG-NLKVLIGIDFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRLRG 385 (485)
Q Consensus 316 ~------~~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~ 385 (485)
| ..+..+++|++|+++.|. +++.....+. .+++|++|++++|.+++. ++..+..+++|++|++++|++++
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 3 235568999999998654 5443333333 589999999999998763 34456789999999999999875
Q ss_pred cC-CccccCCCCCCEEeCCCCcccccCcccc-cCCCCCCceeCCCC
Q 038605 386 SI-PDSFGDLISLKFLNLSNNNLFGAIPASL-EKLSYLEDLNLSFN 429 (485)
Q Consensus 386 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n 429 (485)
.. +..+..+++|++|++++|++++.....+ ..+|.+....+..+
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 43 3334568999999999999986644444 35677766666554
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.6e-27 Score=219.82 Aligned_cols=256 Identities=21% Similarity=0.217 Sum_probs=155.4
Q ss_pred ccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCC--ccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEE
Q 038605 204 HSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGS--IPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYEL 281 (485)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 281 (485)
++++.|+++++.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3444444444444433333355666666666666665422 1334445666666666666665 344446666666666
Q ss_pred EccCCcCccccc-ccccCCCCCcEEeCCCCcCCC-CCccccCCCCCcEEEccCCcCCC-CCCccccCCCCCCeEEccCCc
Q 038605 282 ELGGNKLSGSIP-ACFGNLIALRILSLGSNELTS-IPLTFWNLKDILQLNISSNYFTG-PLPLEIGNLKVLIGIDFSMNN 358 (485)
Q Consensus 282 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~~~ 358 (485)
++++|.+.+... ..+..+++|+.|++++|.+.. .+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 666666654433 355666667777777666665 33345566677777777776654 344556667777777777777
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCC-CCCceeCCCCcccccCCC
Q 038605 359 FSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLS-YLEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 359 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~ 437 (485)
+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..++ +|++|++++|++.+..+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 7666666677777777777777777655555667777777777777777766666676664 777777777777644332
Q ss_pred C---CCCCCCCcccccCCCCccCCCC
Q 038605 438 G---GSFGNFSAESFEGNELLCGSPN 460 (485)
Q Consensus 438 ~---~~~~~L~~l~l~~np~~c~~p~ 460 (485)
. .-+...+.+.+..+...|..|.
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred HHHHHHHHhhhhhhccccccccCCch
Confidence 1 2223334455555555665443
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.4e-27 Score=214.40 Aligned_cols=234 Identities=25% Similarity=0.244 Sum_probs=173.3
Q ss_pred CCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCc-CcccccccccCCCCCcEE
Q 038605 227 LTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNK-LSGSIPACFGNLIALRIL 305 (485)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L 305 (485)
.++|++|+++++.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3577777777777775555567777777777777777776667777777778888887776 655556667777788888
Q ss_pred eCCCCcCCCC-CccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccc
Q 038605 306 SLGSNELTSI-PLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR 384 (485)
Q Consensus 306 ~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 384 (485)
++++|.++.+ +..+..+++|++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 8888877775 445667778888888888777666666777788888888888877666666777888888888888887
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCCCC
Q 038605 385 GSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGSPN 460 (485)
Q Consensus 385 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~p~ 460 (485)
+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++....+....+..++.+....+.+.|.-|.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESG
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCch
Confidence 7777778888888888888888886666667888888888888888876555444455566666777776676554
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.8e-26 Score=222.99 Aligned_cols=244 Identities=23% Similarity=0.195 Sum_probs=135.6
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
..+.|.+..+..+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 346666777777777663 577777777777776667777777777777777777777766777777777777777777
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCc-ccccccchhccCCCCCcEEEccCCccccCCC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGN-SFSGFIPNTFGNLRNLERLNLQDNYLTSSTP 166 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 166 (485)
+.......+ ..+++|++|++++|.+....+..+..+++|++|+++++ .+....+..|..+++|+.|++++|.+...+
T Consensus 135 l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 135 LTVIPSGAF-EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CSBCCTTTS-SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred CCccChhhh-cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 664433333 23666777777666666444445566666666666653 333333334555555555555555544321
Q ss_pred CccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccc
Q 038605 167 ELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPI 246 (485)
Q Consensus 167 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 246 (485)
.+..+++|+.|++++|.+ ....+..+..+++|++|++++|.+.+..+.
T Consensus 213 ------~~~~l~~L~~L~Ls~N~l--------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 260 (452)
T 3zyi_A 213 ------NLTPLVGLEELEMSGNHF--------------------------PEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260 (452)
T ss_dssp ------CCTTCTTCCEEECTTSCC--------------------------SEECGGGGTTCTTCCEEECTTSCCCEECTT
T ss_pred ------cccccccccEEECcCCcC--------------------------cccCcccccCccCCCEEEeCCCcCceECHH
Confidence 122333333333333322 222233344444555555555554444444
Q ss_pred cccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCc
Q 038605 247 ALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNK 287 (485)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 287 (485)
.+..+++|++|++++|.++...+..+..+++|+.|++++|+
T Consensus 261 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred HhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 44444455555555554444333444444444444444444
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=8e-27 Score=221.04 Aligned_cols=275 Identities=19% Similarity=0.184 Sum_probs=172.0
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
...++.++.++++|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 334555667777877664 478888888888776555577788888888888887777777777778888888888877
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccch--hhhcCCCCcEEEccCc-ccccccchhccCCCCCcEEEccCCccccC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPR--FIFNASKLSILELVGN-SFSGFIPNTFGNLRNLERLNLQDNYLTSS 164 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 164 (485)
+....... +..+++|++|++++|.+. .++. .+..+++|++|++++| .+....+..+..+++|++|++++|.+...
T Consensus 112 l~~~~~~~-~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 112 LSNLSSSW-FKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CSSCCHHH-HTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCcCCHhH-hCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 76533332 334777777777777776 3333 5667777777777776 35555555666777777777777766554
Q ss_pred CCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCc
Q 038605 165 TPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSI 244 (485)
Q Consensus 165 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 244 (485)
.+..+..+++|+.|++++|.+. ......+..+++|++|++++|.+.+..
T Consensus 190 -----~~~~l~~l~~L~~L~l~~n~l~--------------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 190 -----EPKSLKSIQNVSHLILHMKQHI--------------------------LLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp -----CTTTTTTCSEEEEEEEECSCST--------------------------THHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred -----CHHHHhccccCCeecCCCCccc--------------------------cchhhhhhhcccccEEECCCCcccccc
Confidence 1233444555555555444432 111122334556666666666554322
Q ss_pred cccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcc----cccccccCCCCCcEEeCCCCcCCCCCccc-
Q 038605 245 PIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSG----SIPACFGNLIALRILSLGSNELTSIPLTF- 319 (485)
Q Consensus 245 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~- 319 (485)
+..+. .......++.++++++.+.+ ..+..+..+++|+.|++++|.++.+|..+
T Consensus 239 ~~~l~---------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 239 FSELS---------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp CC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccccc---------------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 21111 01123445566666665543 23445667788888888888888777653
Q ss_pred cCCCCCcEEEccCCcCCCC
Q 038605 320 WNLKDILQLNISSNYFTGP 338 (485)
Q Consensus 320 ~~~~~L~~L~l~~~~l~~~ 338 (485)
..+++|++|++++|++.+.
T Consensus 298 ~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCTTCCEEECCSSCBCCC
T ss_pred hcCCCCCEEEeeCCCccCc
Confidence 6778888888888877653
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.7e-26 Score=215.82 Aligned_cols=224 Identities=20% Similarity=0.252 Sum_probs=153.3
Q ss_pred ccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEc
Q 038605 204 HSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELEL 283 (485)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (485)
+.++.|++.++.+. .++..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34455555555544 34444556667777777777766 55666666777777777777766 55666667777777777
Q ss_pred cCCcCccccccccc---------CCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEc
Q 038605 284 GGNKLSGSIPACFG---------NLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDF 354 (485)
Q Consensus 284 ~~~~~~~~~~~~~~---------~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 354 (485)
++|.+.+..+..+. .+++|+.|++++|.++.+|..+..+++|++|++++|.+.+ .+..+..+++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 77655545444433 3777777777777777777777777777777777777774 3345667777777777
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcc
Q 038605 355 SMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKL 431 (485)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 431 (485)
++|.+.+.+|..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+.+|..+..+++|+.+++..+.+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777767777777777777777777777667777777777777777777777777777777777777777766554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=2.6e-25 Score=217.02 Aligned_cols=246 Identities=24% Similarity=0.229 Sum_probs=126.0
Q ss_pred CcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCC
Q 038605 151 LERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNL 230 (485)
Q Consensus 151 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 230 (485)
.+.++.++..+..++.. + .++++.|++++|.+..... ..+..+ ++|+.|++++|.+....+..+.++++|
T Consensus 45 ~~~v~c~~~~l~~iP~~------~--~~~l~~L~L~~n~i~~~~~-~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG------I--STNTRLLNLHENQIQIIKV-NSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCSC------C--CTTCSEEECCSCCCCEECT-TTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCEEEeCCCCcCcCCCC------C--CCCCcEEEccCCcCCeeCH-HHhhCC-CCCCEEECCCCcCCccChhhccCCccC
Confidence 45666666655554332 1 1456666666666543222 223333 455555555555554444455555555
Q ss_pred CEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCc-CcccccccccCCCCCcEEeCCC
Q 038605 231 TTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNK-LSGSIPACFGNLIALRILSLGS 309 (485)
Q Consensus 231 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~ 309 (485)
++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|. +.......|..+++|+.|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 555555555554333445555555555555555554444445555555555555532 2222223445555555555555
Q ss_pred CcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCc
Q 038605 310 NELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPD 389 (485)
Q Consensus 310 ~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 389 (485)
|.++.+|. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++|+++...+.
T Consensus 195 n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 195 CNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp SCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred CcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 55555542 34455555555555555544444555555555555555555544444555555555555555555544444
Q ss_pred cccCCCCCCEEeCCCCcc
Q 038605 390 SFGDLISLKFLNLSNNNL 407 (485)
Q Consensus 390 ~~~~~~~L~~L~l~~~~~ 407 (485)
.+..+++|+.|++++|++
T Consensus 274 ~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTSSCTTCCEEECCSSCE
T ss_pred HhccccCCCEEEcCCCCc
Confidence 445555555555555554
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.2e-26 Score=211.93 Aligned_cols=223 Identities=23% Similarity=0.259 Sum_probs=201.1
Q ss_pred cCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEE
Q 038605 226 NLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
..++++.|+++++.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. ..+..+..+++|+.|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3579999999999998 67777888999999999999999 78888999999999999999998 667789999999999
Q ss_pred eCCCCcCC-CCCccccC---------CCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCE
Q 038605 306 SLGSNELT-SIPLTFWN---------LKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEY 375 (485)
Q Consensus 306 ~l~~~~l~-~~~~~~~~---------~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 375 (485)
++++|.+. .+|..+.. +++|++|++++|.+. ..+..+..+++|++|++++|.+.+ ++..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 99997554 47766543 899999999999998 667789999999999999999985 5667899999999
Q ss_pred EECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCC
Q 038605 376 LFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNE 453 (485)
Q Consensus 376 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np 453 (485)
|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|.. ..+++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999999899999999999999999999999899999999999999999999999999976 888889988888764
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.3e-28 Score=250.38 Aligned_cols=401 Identities=15% Similarity=0.092 Sum_probs=226.2
Q ss_pred hccCCCCCcEEEccCCcccccC---Cc------------CCCCCCCCCEEeccCccceecCCcccc-CCCCCCEEEccCC
Q 038605 23 EFGNLADLEQMSLWENNLRGEI---PL------------EIGNLQNLEELDLRQNKLVGIVPAAIF-NVSTLKLLQLQNN 86 (485)
Q Consensus 23 ~l~~~~~L~~L~l~~~~~~~~~---~~------------~~~~l~~L~~L~L~~~~i~~~~~~~l~-~l~~L~~L~L~~~ 86 (485)
.+.++++|++|+++++...... |. .+..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3677889999999987533211 11 123578899999999888766555554 6889999999988
Q ss_pred -ccccccchhhhhcCCCccEEEccCcccccccchhhh----cCCCCcEEEccCcc--ccc-ccchhccCCCCCcEEEccC
Q 038605 87 -SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIF----NASKLSILELVGNS--FSG-FIPNTFGNLRNLERLNLQD 158 (485)
Q Consensus 87 -~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~ 158 (485)
.+...........+++|++|++++|.+.+..+..+. .+++|++|+++++. +.. .....+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 444332333333589999999999887654433333 56789999998875 321 1222234578899999988
Q ss_pred CccccCCCCccccccccCCCCCCEEEccCCCCCCcC-----CccccccccccccEEE-cccccCCcCcchhhhcCCCCCE
Q 038605 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNL-----RKTSVGNLSHSLEIFL-MYNCNISGGISEEISNLTNLTT 232 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~~~~L~~ 232 (485)
|..... .+..+..+++|+.+.++.+...-.. ....+..+ ++|+.+. +.... ...++..+..+++|++
T Consensus 221 ~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~-~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~ 293 (594)
T 2p1m_B 221 AVPLEK-----LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC-KELRCLSGFWDAV-PAYLPAVYSVCSRLTT 293 (594)
T ss_dssp TSCHHH-----HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC-TTCCEEECCBTCC-GGGGGGGHHHHTTCCE
T ss_pred CCcHHH-----HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC-CCcccccCCcccc-hhhHHHHHHhhCCCCE
Confidence 732221 3345667778888887655321000 00012222 4455552 22211 1123333445667777
Q ss_pred EEcCCCcCCCCc-cccccCCCCCCeEeccCccCCCCCC-cccCCCCCCCEEEccC---------CcCcccccccc-cCCC
Q 038605 233 INLGGNKLNGSI-PIALGKLQKLQYLGLEDNKLEGSIP-DDICRLDELYELELGG---------NKLSGSIPACF-GNLI 300 (485)
Q Consensus 233 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~---------~~~~~~~~~~~-~~~~ 300 (485)
|++++|.+.+.. ...+..+++|++|++++| +++... .....+++|+.|++++ +.+++.....+ ..++
T Consensus 294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 777777654221 222446677777777766 321111 1122466677777733 23332222222 2366
Q ss_pred CCcEEeCCCCcCCCC--CccccCCCCCcEEEcc--C----CcCCCCCC-----ccccCCCCCCeEEccCCcccccCcccc
Q 038605 301 ALRILSLGSNELTSI--PLTFWNLKDILQLNIS--S----NYFTGPLP-----LEIGNLKVLIGIDFSMNNFSGVIPTEI 367 (485)
Q Consensus 301 ~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~--~----~~l~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~ 367 (485)
+|+.|.+..+.++.. ......+++|+.|+++ + +.+++... ..+..+++|++|++++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 777776666666541 1112245677777776 2 33332111 1144566777777766 4444333333
Q ss_pred cC-CCCCCEEECCCCcccccCCccc-cCCCCCCEEeCCCCcccccCcc-cccCCCCCCceeCCCCccc
Q 038605 368 GG-LKNLEYLFLGYNRLRGSIPDSF-GDLISLKFLNLSNNNLFGAIPA-SLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 368 ~~-l~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~ 432 (485)
.. +++|++|++++|.+++.....+ ..+++|+.|++++|.+++.... ....+++|++|++++|+++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 33 6677777777777654433333 4467777777777776543332 3344677777777777763
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.3e-25 Score=201.63 Aligned_cols=228 Identities=22% Similarity=0.231 Sum_probs=173.1
Q ss_pred EEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcC
Q 038605 233 INLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNEL 312 (485)
Q Consensus 233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 312 (485)
++..+..+. .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSS--CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCC--CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 444444444 334333 24678888888887766666777788888888888877766666777788888888888888
Q ss_pred CCCC-ccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCccccc-CcccccCCCCCCEEECCCCcccccCCcc
Q 038605 313 TSIP-LTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGV-IPTEIGGLKNLEYLFLGYNRLRGSIPDS 390 (485)
Q Consensus 313 ~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 390 (485)
+.++ ..+..+++|++|++++|.+.+.....+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 7754 4567788888888888888776666678888888888888888763 4778888999999999999988766667
Q ss_pred ccCCCCCC----EEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCCCCCcc
Q 038605 391 FGDLISLK----FLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLQYY 464 (485)
Q Consensus 391 ~~~~~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p~~~~~ 464 (485)
+..+++|+ .|++++|.+.+..+..+ ...+|++|++++|++.+..+.. ..+++|+.+++++||+.|+||...|.
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred hhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHH
Confidence 77777777 89999999985555444 4458999999999987554443 77999999999999999999876543
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.5e-24 Score=197.21 Aligned_cols=185 Identities=29% Similarity=0.369 Sum_probs=116.3
Q ss_pred CCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCcc-ccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEcc
Q 038605 277 ELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLT-FWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFS 355 (485)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 355 (485)
+++.|++++|.+....+..|..+++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 344444444444433333444444555555555554444432 2345555555555555554444445556666666666
Q ss_pred CCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccC
Q 038605 356 MNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEI 435 (485)
Q Consensus 356 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 435 (485)
+|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP 197 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence 66666555556677777777777777777555555777778888888888777666666777788888888888776433
Q ss_pred CC-CCCCCCCCcccccCCCCccCCCCC
Q 038605 436 PR-GGSFGNFSAESFEGNELLCGSPNL 461 (485)
Q Consensus 436 p~-~~~~~~L~~l~l~~np~~c~~p~~ 461 (485)
+. ...+++|+.|++++|||.|+|+..
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~c~c~~~ 224 (270)
T 2o6q_A 198 EGAFDSLEKLKMLQLQENPWDCTCNGI 224 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred HHHhccccCCCEEEecCCCeeCCCccH
Confidence 33 366788888888888888888643
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.7e-26 Score=212.85 Aligned_cols=236 Identities=18% Similarity=0.149 Sum_probs=178.4
Q ss_pred cccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEE
Q 038605 203 SHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELE 282 (485)
Q Consensus 203 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 282 (485)
.++++.|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ...++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEE
Confidence 3678888888888887777788888888888888888864433 77888888888888887633 2337888888
Q ss_pred ccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccc-cCCCCCCeEEccCCccc
Q 038605 283 LGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEI-GNLKVLIGIDFSMNNFS 360 (485)
Q Consensus 283 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~ 360 (485)
+++|.+.+..+ ..+++|+.|++++|.++.++. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.
T Consensus 106 l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 88888775443 235778888888888888644 56677888888888888876655555 36788888888888887
Q ss_pred ccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccc-ccCCCC-
Q 038605 361 GVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLE-GEIPRG- 438 (485)
Q Consensus 361 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~- 438 (485)
+.. ....+++|++|++++|.+++ .+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++. +.+|..
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 DVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred ccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 542 23347888888888888874 4445788888888888888887 46777788888888888888887 444443
Q ss_pred CCCCCCCcccccCC
Q 038605 439 GSFGNFSAESFEGN 452 (485)
Q Consensus 439 ~~~~~L~~l~l~~n 452 (485)
..++.|+.+++.++
T Consensus 259 ~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 259 SKNQRVQTVAKQTV 272 (317)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred hccccceEEECCCc
Confidence 67777888888733
No 67
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.3e-24 Score=199.21 Aligned_cols=203 Identities=28% Similarity=0.310 Sum_probs=114.4
Q ss_pred CCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEE
Q 038605 250 KLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLN 329 (485)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 329 (485)
.++++++++++++.++ .+|..+. ++++.|++++|.+....+..+..+++|+.|++++|.++.++.. ..+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 3344444444444444 2222221 3444444444444443344444445555555555554444332 3445555555
Q ss_pred ccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 038605 330 ISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFG 409 (485)
Q Consensus 330 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 409 (485)
+++|.+. ..+..+..+++|++|++++|.+....+..|..+++|++|++++|++....+..|..+++|+.|++++|++..
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 5555554 233344455555666666666555445556666677777777777665555556667777777777777764
Q ss_pred cCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCC
Q 038605 410 AIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 410 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~ 458 (485)
..+..+..+++|++|++++|++. .+|.. ...+.|+.+++.+|||.|+|
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 44445566777777777777776 44433 55667777788888888877
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.8e-28 Score=246.29 Aligned_cols=416 Identities=12% Similarity=0.086 Sum_probs=278.7
Q ss_pred cEEEccCCcccccCCcCCCCCCCCCEEeccCcc-ceec--CC------------ccccCCCCCCEEEccCCccccccchh
Q 038605 31 EQMSLWENNLRGEIPLEIGNLQNLEELDLRQNK-LVGI--VP------------AAIFNVSTLKLLQLQNNSLLGCLSSI 95 (485)
Q Consensus 31 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~~--~~------------~~l~~l~~L~~L~L~~~~~~~~~~~~ 95 (485)
+.++++.+... .....+..+++|++|+++++. +.+. .+ .....+++|++|++++|.+.+.....
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 45666555432 223345678899999999874 2211 11 11346889999999999887655555
Q ss_pred hhhcCCCccEEEccCc-ccccc-cchhhhcCCCCcEEEccCcccccccchhc----cCCCCCcEEEccCCccccCCCCcc
Q 038605 96 ADVRLPNLEELSLWGN-NFNGT-IPRFIFNASKLSILELVGNSFSGFIPNTF----GNLRNLERLNLQDNYLTSSTPELS 169 (485)
Q Consensus 96 ~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~ 169 (485)
....+++|++|++++| .+... ++.....+++|++|++++|.+++..+..+ ..+++|+.|+++++. ...... .
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~-~ 202 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFS-A 202 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHH-H
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHH-H
Confidence 5545899999999998 44432 44555579999999999998775544333 367799999999886 111100 0
Q ss_pred ccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCC------cCcchhhhcCCCCCEE-EcCCCcCCC
Q 038605 170 FLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNIS------GGISEEISNLTNLTTI-NLGGNKLNG 242 (485)
Q Consensus 170 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L-~l~~~~~~~ 242 (485)
+...+..+++|+.|++++|..... ....+..+ ++|+.|.+..+... ..++..+.++++|+.+ .+.+... .
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~ 279 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEK-LATLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-A 279 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-G
T ss_pred HHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-h
Confidence 112234579999999998843222 11222233 67899987665321 1233467888999988 3443322 2
Q ss_pred CccccccCCCCCCeEeccCccCCCCCC-cccCCCCCCCEEEccCCcCcccccc-cccCCCCCcEEeCCC---------Cc
Q 038605 243 SIPIALGKLQKLQYLGLEDNKLEGSIP-DDICRLDELYELELGGNKLSGSIPA-CFGNLIALRILSLGS---------NE 311 (485)
Q Consensus 243 ~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~---------~~ 311 (485)
..+..+..+++|++|++++|.+++... ..+..+++|+.|++++| +...... ....+++|++|++.+ +.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 344444567999999999998664322 23568899999999998 4322222 234589999999944 34
Q ss_pred CCC--CCccccCCCCCcEEEccCCcCCCCCCcccc-CCCCCCeEEcc--C----Cccccc-----CcccccCCCCCCEEE
Q 038605 312 LTS--IPLTFWNLKDILQLNISSNYFTGPLPLEIG-NLKVLIGIDFS--M----NNFSGV-----IPTEIGGLKNLEYLF 377 (485)
Q Consensus 312 l~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~l~~L~~L~ 377 (485)
++. +......+++|++|.+..+.+++.....+. .+++|++|+++ + +.++.. ++..+..+++|++|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 443 222223478999999888888765444444 58999999999 3 345421 122366789999999
Q ss_pred CCCCcccccCCccccC-CCCCCEEeCCCCcccccCcccc-cCCCCCCceeCCCCcccccCC--CCCCCCCCCcccccCCC
Q 038605 378 LGYNRLRGSIPDSFGD-LISLKFLNLSNNNLFGAIPASL-EKLSYLEDLNLSFNKLEGEIP--RGGSFGNFSAESFEGNE 453 (485)
Q Consensus 378 l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p--~~~~~~~L~~l~l~~np 453 (485)
+++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|+++...+ ....+++|+.|++++|+
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 988 666555555555 8899999999999976655555 678999999999999954322 22568999999999998
Q ss_pred C
Q 038605 454 L 454 (485)
Q Consensus 454 ~ 454 (485)
.
T Consensus 518 ~ 518 (594)
T 2p1m_B 518 V 518 (594)
T ss_dssp C
T ss_pred C
Confidence 5
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-25 Score=219.08 Aligned_cols=245 Identities=20% Similarity=0.193 Sum_probs=196.5
Q ss_pred ccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEc
Q 038605 204 HSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELEL 283 (485)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (485)
++++.|++++|.+....+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence 466666666666666666778888999999999998875444 788899999999999887432 3388999999
Q ss_pred cCCcCcccccccccCCCCCcEEeCCCCcCCCC-CccccCCCCCcEEEccCCcCCCCCCcccc-CCCCCCeEEccCCcccc
Q 038605 284 GGNKLSGSIPACFGNLIALRILSLGSNELTSI-PLTFWNLKDILQLNISSNYFTGPLPLEIG-NLKVLIGIDFSMNNFSG 361 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~~L~~L~l~~~~~~~ 361 (485)
++|.+.+..+. .+++|+.|++++|.++.+ |..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|.+.+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99988765443 467899999999999985 45677889999999999999877666665 78999999999999886
Q ss_pred cCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccc-ccCCCC-C
Q 038605 362 VIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLE-GEIPRG-G 439 (485)
Q Consensus 362 ~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~-~ 439 (485)
.. ....+++|++|++++|.+++ .+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++. +.+|.. .
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 52 24468999999999999985 4445888999999999999998 46777888999999999999997 455543 6
Q ss_pred CCCCCCccccc-------CCCCccCCCCCC
Q 038605 440 SFGNFSAESFE-------GNELLCGSPNLQ 462 (485)
Q Consensus 440 ~~~~L~~l~l~-------~np~~c~~p~~~ 462 (485)
.++.|+.+++. ++|+.|.|+...
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~~~~~ 289 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSSTTCE
T ss_pred hCCCCcEEeccccccccCCCcccccCCccc
Confidence 78888888886 899999886543
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.6e-23 Score=207.70 Aligned_cols=260 Identities=26% Similarity=0.336 Sum_probs=139.4
Q ss_pred CCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEE
Q 038605 28 ADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELS 107 (485)
Q Consensus 28 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 107 (485)
.++++|+++++.++ .+|..+. ++|++|++++|.++.+ |. .+++|++|++++|.+..... .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV-----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCCCC-----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcCCC-----CCCCCCEEE
Confidence 35788888888887 6666554 7888888888888743 33 56788888888887764332 367788888
Q ss_pred ccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccC
Q 038605 108 LWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSN 187 (485)
Q Consensus 108 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 187 (485)
+++|.++ .+|. .+++|++|++++|.++.. +. .+++|++|++++|.+...+. ...+|+.|++++
T Consensus 108 Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~---------~~~~L~~L~L~~ 170 (622)
T 3g06_A 108 IFSNPLT-HLPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA---------LPSELCKLWAYN 170 (622)
T ss_dssp ECSCCCC-CCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCS
T ss_pred CcCCcCC-CCCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcCC---------ccCCCCEEECCC
Confidence 8777776 3333 456677777777766642 22 23666666666665554321 123444455444
Q ss_pred CCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCC
Q 038605 188 NPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGS 267 (485)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 267 (485)
|.+.. ++ ..+++|+.|++++|.+.+ ++. .+++|+.|++++|.++.
T Consensus 171 N~l~~---------------------------l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 215 (622)
T 3g06_A 171 NQLTS---------------------------LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS- 215 (622)
T ss_dssp SCCSC---------------------------CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-
T ss_pred CCCCC---------------------------Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-
Confidence 44331 11 123455555555555542 221 12455555555555542
Q ss_pred CCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCC
Q 038605 268 IPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLK 347 (485)
Q Consensus 268 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 347 (485)
++. .+++|+.|++++|.+... + ..+++|+.|++++|.++.+|. .+++|+.|++++|.+. ..+..+..++
T Consensus 216 l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 216 LPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp CCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred cCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 221 124455555555544421 1 233445555555555544443 2344444444444444 2233344444
Q ss_pred CCCeEEccCCccccc
Q 038605 348 VLIGIDFSMNNFSGV 362 (485)
Q Consensus 348 ~L~~L~l~~~~~~~~ 362 (485)
+|+.|++++|.+.+.
T Consensus 285 ~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 285 SETTVNLEGNPLSER 299 (622)
T ss_dssp TTCEEECCSCCCCHH
T ss_pred ccCEEEecCCCCCCc
Confidence 444444444444433
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=4.6e-23 Score=206.91 Aligned_cols=165 Identities=26% Similarity=0.248 Sum_probs=86.5
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (485)
++|++|++++|.+.+ ++. .+.+|+.|++++|.++. ++ ..+++|+.|++++|.+.+. +. .+++|+.|++
T Consensus 141 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L 208 (622)
T 3g06_A 141 PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWA 208 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEEC
Confidence 566666666666552 221 23556666666666653 23 3345666666666665532 11 2355666666
Q ss_pred CCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccC
Q 038605 308 GSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSI 387 (485)
Q Consensus 308 ~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 387 (485)
++|.++.+|.. +++|+.|++++|.+++.. ..+++|++|++++|.+.. +|. .+++|+.|++++|.++ .+
T Consensus 209 ~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~l 276 (622)
T 3g06_A 209 YNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RL 276 (622)
T ss_dssp CSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SC
T ss_pred cCCcccccCCC---CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cC
Confidence 66666655532 355666666666555322 233555555555555552 222 3445555555555555 44
Q ss_pred CccccCCCCCCEEeCCCCcccccCccccc
Q 038605 388 PDSFGDLISLKFLNLSNNNLFGAIPASLE 416 (485)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 416 (485)
|..+..+++|+.|++++|++.+..+..+.
T Consensus 277 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 277 PESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 44555555555555555555544444433
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4e-25 Score=217.53 Aligned_cols=221 Identities=22% Similarity=0.224 Sum_probs=192.7
Q ss_pred cCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEE
Q 038605 226 NLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 226 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+.. ..++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34589999999999998778889999999999999999986544 899999999999999887432 34899999
Q ss_pred eCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCccccc-CCCCCCEEECCCCccc
Q 038605 306 SLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG-GLKNLEYLFLGYNRLR 384 (485)
Q Consensus 306 ~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~ 384 (485)
++++|.++.++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.++
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 9999999997653 568999999999999988888889999999999999999987777775 7999999999999998
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCC
Q 038605 385 GSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 385 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
+.. .+..+++|+.|++++|.+.+. |..+..+++|+.|++++|.+.+..+....+++|+.+++++|++.|++
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 183 DVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred ccc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 653 344689999999999999964 45588999999999999999864334588899999999999999887
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.8e-26 Score=211.55 Aligned_cols=200 Identities=24% Similarity=0.254 Sum_probs=123.3
Q ss_pred CCCCCCeEeccCccCCCCCCccc--CCCCCCCEEEccCCcCcccccccccCC-----CCCcEEeCCCCcCCCCC-ccccC
Q 038605 250 KLQKLQYLGLEDNKLEGSIPDDI--CRLDELYELELGGNKLSGSIPACFGNL-----IALRILSLGSNELTSIP-LTFWN 321 (485)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~-~~~~~ 321 (485)
.+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+..++ ..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45566666666666665555544 5566666666666666544 4444443 66666666666666644 45556
Q ss_pred CCCCcEEEccCCcCCCC--CCcc--ccCCCCCCeEEccCCcccc---cCcccccCCCCCCEEECCCCcccccCC-ccccC
Q 038605 322 LKDILQLNISSNYFTGP--LPLE--IGNLKVLIGIDFSMNNFSG---VIPTEIGGLKNLEYLFLGYNRLRGSIP-DSFGD 393 (485)
Q Consensus 322 ~~~L~~L~l~~~~l~~~--~~~~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~ 393 (485)
+++|++|++++|++.+. .+.. +..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 66666666666665432 1112 2556677777777776652 112334566777777777777765443 34555
Q ss_pred CCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCC
Q 038605 394 LISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNEL 454 (485)
Q Consensus 394 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~ 454 (485)
+++|++|++++|.+. .+|..+. ++|++|++++|++++. |....+++|+.|++++|++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTT
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCC
Confidence 677777777777776 5555554 6777777777777644 6667777777777777774
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.2e-26 Score=211.30 Aligned_cols=238 Identities=21% Similarity=0.159 Sum_probs=112.1
Q ss_pred CCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCC
Q 038605 100 LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKS 179 (485)
Q Consensus 100 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~ 179 (485)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ...++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l----------~~~~~ 100 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL----------LVGPS 100 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE----------EECTT
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc----------cCCCC
Confidence 4556666666666654444555566666666666665554332 55555666666665554432 11234
Q ss_pred CCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEec
Q 038605 180 LTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGL 259 (485)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 259 (485)
|+.|++++|.+ .+..+ ..+++|++|++
T Consensus 101 L~~L~l~~n~l--------------------------------------------------~~~~~---~~~~~L~~L~l 127 (317)
T 3o53_A 101 IETLHAANNNI--------------------------------------------------SRVSC---SRGQGKKNIYL 127 (317)
T ss_dssp CCEEECCSSCC--------------------------------------------------SEEEE---CCCSSCEEEEC
T ss_pred cCEEECCCCcc--------------------------------------------------CCcCc---cccCCCCEEEC
Confidence 44444444433 22111 11233444444
Q ss_pred cCccCCCCCCcccCCCCCCCEEEccCCcCcccccccc-cCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCC
Q 038605 260 EDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACF-GNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGP 338 (485)
Q Consensus 260 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~ 338 (485)
++|.+++..+..+..+++|++|++++|.+....+..+ ..+++|+.|++++|.++.++.. ..+++|++|++++|++.+.
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcc
Confidence 4444443333333444444444444444443332222 2344444444444444444322 1244555555555554432
Q ss_pred CCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccc-ccCCccccCCCCCCEEeCCCC
Q 038605 339 LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR-GSIPDSFGDLISLKFLNLSNN 405 (485)
Q Consensus 339 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~ 405 (485)
.+ .+..+++|++|++++|.+.. +|..+..+++|+.|++++|++. +..+..+..++.|+.|++.++
T Consensus 207 ~~-~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 207 GP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hh-hhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 22 24444555555555555542 3344555555555555555554 344444555555555555533
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.1e-25 Score=209.16 Aligned_cols=222 Identities=18% Similarity=0.220 Sum_probs=172.1
Q ss_pred ccEEEcccccCCc-Ccchhhh-------cCCCCCEEEcCCCcCCCCccccc--cCCCCCCeEeccCccCCCCCCcccCCC
Q 038605 206 LEIFLMYNCNISG-GISEEIS-------NLTNLTTINLGGNKLNGSIPIAL--GKLQKLQYLGLEDNKLEGSIPDDICRL 275 (485)
Q Consensus 206 L~~L~l~~~~~~~-~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~~ 275 (485)
++.|+++++.+.. ..+..+. .+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 5555555555422 2333333 67889999999998887777665 7888999999999998866 6666655
Q ss_pred -----CCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCC---CCccc--cCCCCCcEEEccCCcCCCCC---Ccc
Q 038605 276 -----DELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTS---IPLTF--WNLKDILQLNISSNYFTGPL---PLE 342 (485)
Q Consensus 276 -----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~--~~~~~L~~L~l~~~~l~~~~---~~~ 342 (485)
++|++|++++|.+.+..+..+..+++|++|++++|.+.. ++..+ ..+++|++|++++|++.+.. ...
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 889999999999887777888889999999999998765 23333 67889999999999887321 123
Q ss_pred ccCCCCCCeEEccCCcccccCc-ccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCC
Q 038605 343 IGNLKVLIGIDFSMNNFSGVIP-TEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYL 421 (485)
Q Consensus 343 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 421 (485)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++.+. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 4577899999999999887653 45667899999999999998 6676665 8999999999999855 55 8889999
Q ss_pred CceeCCCCcccc
Q 038605 422 EDLNLSFNKLEG 433 (485)
Q Consensus 422 ~~L~l~~n~~~~ 433 (485)
++|++++|++++
T Consensus 299 ~~L~L~~N~l~~ 310 (312)
T 1wwl_A 299 GNLSLKGNPFLD 310 (312)
T ss_dssp EEEECTTCTTTC
T ss_pred CEEeccCCCCCC
Confidence 999999999874
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.4e-22 Score=184.22 Aligned_cols=205 Identities=26% Similarity=0.323 Sum_probs=151.9
Q ss_pred CCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCC
Q 038605 229 NLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLG 308 (485)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (485)
..+.++++++.+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+.......|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4667777777776 3443332 567788888887776666677777888888888887776555566777888888888
Q ss_pred CCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccC
Q 038605 309 SNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSI 387 (485)
Q Consensus 309 ~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 387 (485)
+|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 888777664 4566778888888888877766666777888888888888877666666777888888888888887666
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCC
Q 038605 388 PDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIP 436 (485)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 436 (485)
+..|..+++|++|++++|++.+..+..+..+++|+.|++++|++....+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6667778888888888888876655667778888888888888765443
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.1e-23 Score=187.59 Aligned_cols=203 Identities=24% Similarity=0.217 Sum_probs=160.9
Q ss_pred hhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCc
Q 038605 224 ISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALR 303 (485)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (485)
+.+++++++++++++.+. .+|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+..... ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 456678888888888877 444433 2678888888888887777778888888888888888775433 26778888
Q ss_pred EEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcc
Q 038605 304 ILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRL 383 (485)
Q Consensus 304 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 383 (485)
.|++++|.++.+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 88888888888888777888888888888888877767788888888888888888877667778888888888888888
Q ss_pred cccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccc
Q 038605 384 RGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 432 (485)
+...+..|..+++|++|++++|++. .+|..+...++|+.|++++|++.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 8555566778888888888888888 66777777788888888888875
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=3.1e-23 Score=189.25 Aligned_cols=210 Identities=25% Similarity=0.269 Sum_probs=157.3
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (485)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46777777777776555556777777888888887777666667777788888888888777666667777888888888
Q ss_pred CCCcCCCCCc-cccCCCCCcEEEccCCcCCCC-CCccccCCCCCCeEEccCCcccccCcccccCCCCCC----EEECCCC
Q 038605 308 GSNELTSIPL-TFWNLKDILQLNISSNYFTGP-LPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE----YLFLGYN 381 (485)
Q Consensus 308 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~ 381 (485)
++|.+..++. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 8888777654 566778888888888887753 366777888888888888888776666666555555 8889999
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC
Q 038605 382 RLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG 438 (485)
Q Consensus 382 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 438 (485)
.+....+..+. ..+|+.|++++|.+.+..+..+..+++|++|++++|++.+..|..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 88855554444 347999999999888666666788899999999999988666543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=6.2e-23 Score=186.59 Aligned_cols=204 Identities=25% Similarity=0.303 Sum_probs=164.8
Q ss_pred hhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCc
Q 038605 224 ISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALR 303 (485)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (485)
+..+++|+.|+++++.+.. . ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4567788888888888762 2 3467788888888888888753 4678888888888888888876666678888888
Q ss_pred EEeCCCCcCCCCCcc-ccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 304 ILSLGSNELTSIPLT-FWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 304 ~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
+|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 888888888886653 6778888999998888887766667888889999999998887766777888899999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG 438 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 438 (485)
+.+..+..+..+++|+.|++++|++.+ .+++|+.+++..|.+.+.+|..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred CCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCc
Confidence 887777778888999999999988763 4567888889999998888854
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.1e-22 Score=183.06 Aligned_cols=213 Identities=23% Similarity=0.272 Sum_probs=172.5
Q ss_pred CCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCC
Q 038605 229 NLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLG 308 (485)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (485)
.+..+.+.++.+.+. .....+++|+.|++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344455666655422 3456778999999999988743 3578899999999999988753 478889999999999
Q ss_pred CCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccC
Q 038605 309 SNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSI 387 (485)
Q Consensus 309 ~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~ 387 (485)
+|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 999998765 4678899999999999998777777888999999999999988777777888999999999999998766
Q ss_pred CccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCC
Q 038605 388 PDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNE 453 (485)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np 453 (485)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..| .|+.+++.+|.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~ 233 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINK 233 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHHH
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHHh
Confidence 7778889999999999999987777778889999999999998875544 56777766664
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.6e-21 Score=180.39 Aligned_cols=194 Identities=25% Similarity=0.345 Sum_probs=130.4
Q ss_pred hcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcE
Q 038605 225 SNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRI 304 (485)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (485)
..+++|++|+++++.+.. .+ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 445667777777776653 23 45667777777777777764333 66777777777777776543 35666777777
Q ss_pred EeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccc
Q 038605 305 LSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR 384 (485)
Q Consensus 305 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 384 (485)
|++++|.++.++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 7777777777654 5667777777777777764432 6677777777777777764322 667777777777777776
Q ss_pred ccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccc
Q 038605 385 GSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEG 433 (485)
Q Consensus 385 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 433 (485)
+..+ +..+++|++|++++|++.+.. .+..+++|++|++++|++++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 3322 667777777777777776443 36677777777777777753
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.1e-22 Score=175.40 Aligned_cols=196 Identities=16% Similarity=0.101 Sum_probs=115.7
Q ss_pred CCCeEeccCccCCCCCCcccCCCCCCCEEEccCCc-CcccccccccCCCCCcEEeCCC-CcCCCCCc-cccCCCCCcEEE
Q 038605 253 KLQYLGLEDNKLEGSIPDDICRLDELYELELGGNK-LSGSIPACFGNLIALRILSLGS-NELTSIPL-TFWNLKDILQLN 329 (485)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~ 329 (485)
++++|++++|.+++..+..+.++++|++|++++|. +....+..|..+++|++|++++ |.++.++. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555555554444455555566666666654 4444444555556666666665 55555442 344556666666
Q ss_pred ccCCcCCCCCCccccCCCCCC---eEEccCC-cccccCcccccCCCCCC-EEECCCCcccccCCccccCCCCCCEEeCCC
Q 038605 330 ISSNYFTGPLPLEIGNLKVLI---GIDFSMN-NFSGVIPTEIGGLKNLE-YLFLGYNRLRGSIPDSFGDLISLKFLNLSN 404 (485)
Q Consensus 330 l~~~~l~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 404 (485)
+++|++.+. +. +..+++|+ +|++++| .+....+..|.++++|+ +|++++|+++...+..+.. ++|++|++++
T Consensus 112 l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 666655542 22 45555555 6666666 66655555566677777 7777777766333333444 6677777777
Q ss_pred Cc-ccccCcccccCC-CCCCceeCCCCcccccCCCCCCCCCCCcccccCCC
Q 038605 405 NN-LFGAIPASLEKL-SYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNE 453 (485)
Q Consensus 405 ~~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np 453 (485)
|+ +....+..+..+ ++|++|++++|++. .+|.. .+++|+.|++.+++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCcc
Confidence 74 665555566666 77777777777775 44443 66777777776654
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=182.01 Aligned_cols=201 Identities=19% Similarity=0.158 Sum_probs=98.3
Q ss_pred CCCCEEEcCCCcCCCCccccc--cCCCCCCeEeccCccCCCCCC----cccCCCCCCCEEEccCCcCcccccccccCCCC
Q 038605 228 TNLTTINLGGNKLNGSIPIAL--GKLQKLQYLGLEDNKLEGSIP----DDICRLDELYELELGGNKLSGSIPACFGNLIA 301 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 301 (485)
++|++|++++|.+.+..+..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555554444444 455555555555555553322 12233445555555555554444444444455
Q ss_pred CcEEeCCCCcCCC---CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccC--cc-cccCCCCCCE
Q 038605 302 LRILSLGSNELTS---IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVI--PT-EIGGLKNLEY 375 (485)
Q Consensus 302 L~~L~l~~~~l~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~-~~~~l~~L~~ 375 (485)
|++|++++|++.. ++. ...+..+++|++|++++|.++... +. .+..+++|++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~----------------------~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMA----------------------ALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp CCEEECCSCTTCHHHHHHT----------------------TSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSS
T ss_pred CCEEECCCCCCccchhhhH----------------------HHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCE
Confidence 5555555544332 111 111234445555555555543211 01 1344555566
Q ss_pred EECCCCcccccCCccccCC---CCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCC
Q 038605 376 LFLGYNRLRGSIPDSFGDL---ISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGN 452 (485)
Q Consensus 376 L~l~~~~l~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~n 452 (485)
|++++|.+.+..|..+..+ ++|++|++++|++. .+|..+. ++|++|++++|++++ +|....+++|+.|++++|
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNLTLDGN 304 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCEECSST
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEEECcCC
Confidence 6666665554444444443 46666666666655 3444442 566666666666653 244455566666666666
Q ss_pred CC
Q 038605 453 EL 454 (485)
Q Consensus 453 p~ 454 (485)
++
T Consensus 305 ~l 306 (310)
T 4glp_A 305 PF 306 (310)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=5.8e-21 Score=171.43 Aligned_cols=179 Identities=22% Similarity=0.284 Sum_probs=125.4
Q ss_pred CCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEcc
Q 038605 253 KLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNIS 331 (485)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~ 331 (485)
..++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777777776 4454443 577888888887776666667777788888888877777544 45667777777777
Q ss_pred CCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccC
Q 038605 332 SNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAI 411 (485)
Q Consensus 332 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 411 (485)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777666666667777777777777777655555667777777777777776555556777777777777777777555
Q ss_pred cccccCCCCCCceeCCCCccccc
Q 038605 412 PASLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 412 ~~~l~~l~~L~~L~l~~n~~~~~ 434 (485)
+..+..+++|++|++++|++...
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 55666777777777777777644
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.9e-21 Score=173.34 Aligned_cols=198 Identities=19% Similarity=0.237 Sum_probs=173.0
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCcc-CCCCCCcccCCCCCCCEEEccC-CcCcccccccccCCCCCcEE
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNK-LEGSIPDDICRLDELYELELGG-NKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 305 (485)
+++++|++++|.+.+..+..+..+++|++|++++|. ++...+..|.++++|++|++++ |.+....+..|..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999987666688999999999999997 8877777899999999999998 89987777789999999999
Q ss_pred eCCCCcCCCCCccccCCCCCc---EEEccCC-cCCCCCCccccCCCCCC-eEEccCCcccccCcccccCCCCCCEEECCC
Q 038605 306 SLGSNELTSIPLTFWNLKDIL---QLNISSN-YFTGPLPLEIGNLKVLI-GIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 380 (485)
Q Consensus 306 ~l~~~~l~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 380 (485)
++++|.++.+|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|.+....+..+.. ++|++|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999999999987 77888888 9999999 88877777789999999 9999999998655555666 8999999999
Q ss_pred Cc-ccccCCccccCC-CCCCEEeCCCCcccccCcccccCCCCCCceeCCCCc
Q 038605 381 NR-LRGSIPDSFGDL-ISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNK 430 (485)
Q Consensus 381 ~~-l~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 430 (485)
|+ ++...+..|..+ ++|+.|++++|++.. +|.. .+++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 95 987777889999 999999999999984 4443 67899999998874
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=2.9e-22 Score=188.48 Aligned_cols=220 Identities=17% Similarity=0.184 Sum_probs=128.7
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCC-CCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEe
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGS-IPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILS 306 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (485)
++++.++++++.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5666666666666544333 34566666666666665533 444556666666666666666555555566666667777
Q ss_pred CCCC-cCCC--CCccccCCCCCcEEEccCC-cCCCC-CCccccCCC-CCCeEEccCC--ccc-ccCcccccCCCCCCEEE
Q 038605 307 LGSN-ELTS--IPLTFWNLKDILQLNISSN-YFTGP-LPLEIGNLK-VLIGIDFSMN--NFS-GVIPTEIGGLKNLEYLF 377 (485)
Q Consensus 307 l~~~-~l~~--~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~~~~~~-~L~~L~l~~~--~~~-~~~~~~~~~l~~L~~L~ 377 (485)
+++| .++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++| .++ ..++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 4553 4444555666777777666 55532 233455666 6777777776 333 23344555666777777
Q ss_pred CCCCc-ccccCCccccCCCCCCEEeCCCCc-ccccCcccccCCCCCCceeCCCCcccccCCCC--CCC-CCCCcccccCC
Q 038605 378 LGYNR-LRGSIPDSFGDLISLKFLNLSNNN-LFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG--GSF-GNFSAESFEGN 452 (485)
Q Consensus 378 l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--~~~-~~L~~l~l~~n 452 (485)
+++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| ++.. ..+ ..++.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS 303 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc
Confidence 77776 554555566666777777777763 33222234566677777777766 2222 122 33566666666
Q ss_pred C
Q 038605 453 E 453 (485)
Q Consensus 453 p 453 (485)
.
T Consensus 304 ~ 304 (336)
T 2ast_B 304 H 304 (336)
T ss_dssp C
T ss_pred c
Confidence 5
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.2e-20 Score=169.42 Aligned_cols=180 Identities=23% Similarity=0.299 Sum_probs=152.8
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (485)
...++++++++.+. .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45678999998887 4554443 68999999999998888888899999999999999998777777888999999999
Q ss_pred CCCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccccc
Q 038605 308 GSNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGS 386 (485)
Q Consensus 308 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 386 (485)
++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++...
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9999998764 567889999999999999877777788899999999999999877666788899999999999999877
Q ss_pred CCccccCCCCCCEEeCCCCccccc
Q 038605 387 IPDSFGDLISLKFLNLSNNNLFGA 410 (485)
Q Consensus 387 ~~~~~~~~~~L~~L~l~~~~~~~~ 410 (485)
.+..+..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 777888899999999999988743
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.5e-21 Score=176.35 Aligned_cols=195 Identities=22% Similarity=0.328 Sum_probs=169.0
Q ss_pred ccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcE
Q 038605 248 LGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQ 327 (485)
Q Consensus 248 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 327 (485)
...+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++ .+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 45678999999999999853 4 68899999999999999986544 899999999999999999986 5788999999
Q ss_pred EEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcc
Q 038605 328 LNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNL 407 (485)
Q Consensus 328 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 407 (485)
|++++|.+.+.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCcc
Confidence 999999998643 48899999999999999986533 88899999999999999853 33 88999999999999999
Q ss_pred cccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCcc
Q 038605 408 FGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLC 456 (485)
Q Consensus 408 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c 456 (485)
.+..+ +..+++|++|++++|++.+.. ....+++|+.|++++|++.+
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeec
Confidence 85433 889999999999999998544 57889999999999999644
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.7e-21 Score=178.44 Aligned_cols=176 Identities=23% Similarity=0.237 Sum_probs=121.1
Q ss_pred CCEEEccCCcCcccccccc--cCCCCCcEEeCCCCcCCCC-C----ccccCCCCCcEEEccCCcCCCCCCccccCCCCCC
Q 038605 278 LYELELGGNKLSGSIPACF--GNLIALRILSLGSNELTSI-P----LTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLI 350 (485)
Q Consensus 278 L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~l~~~-~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~ 350 (485)
|++|++++|.+.+..+..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444443333333 4444455555555544431 1 1223566777777777777666666777778888
Q ss_pred eEEccCCccccc----CcccccCCCCCCEEECCCCcccccCCc----cccCCCCCCEEeCCCCcccccCcccccCC---C
Q 038605 351 GIDFSMNNFSGV----IPTEIGGLKNLEYLFLGYNRLRGSIPD----SFGDLISLKFLNLSNNNLFGAIPASLEKL---S 419 (485)
Q Consensus 351 ~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~l~~l---~ 419 (485)
+|++++|.+.+. ....+..+++|++|++++|+++. .+. .+..+++|++|++++|.+.+..|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 888888876532 12334688999999999999973 222 24678999999999999998778777766 7
Q ss_pred CCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccC
Q 038605 420 YLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCG 457 (485)
Q Consensus 420 ~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~ 457 (485)
+|++|++++|++. .+|..- +++|+.|++++|. +.+
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~-~~~L~~L~Ls~N~-l~~ 286 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGL-PAKLRVLDLSSNR-LNR 286 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCC-CSCCSCEECCSCC-CCS
T ss_pred cCCEEECCCCCCC-chhhhh-cCCCCEEECCCCc-CCC
Confidence 9999999999998 677643 4899999999998 444
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=8.2e-22 Score=187.02 Aligned_cols=131 Identities=24% Similarity=0.167 Sum_probs=63.7
Q ss_pred EEccCCcccccCCcCCCCCCCCCEEeccCccceecCC----ccccCCC-CCCEEEccCCccccccchhhhhc----CCCc
Q 038605 33 MSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVP----AAIFNVS-TLKLLQLQNNSLLGCLSSIADVR----LPNL 103 (485)
Q Consensus 33 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~----~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~----l~~L 103 (485)
++++++.+++.+|..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+.......+... +++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455555554444444444445666666555554433 4445555 55666665555554333222210 1555
Q ss_pred cEEEccCcccccccchhh----hcC-CCCcEEEccCcccccccchhcc----C-CCCCcEEEccCCcccc
Q 038605 104 EELSLWGNNFNGTIPRFI----FNA-SKLSILELVGNSFSGFIPNTFG----N-LRNLERLNLQDNYLTS 163 (485)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~~~ 163 (485)
++|++++|.+.+..+..+ ..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 555655555554333322 222 5555555555555544333322 2 2355555555555543
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.7e-22 Score=193.78 Aligned_cols=100 Identities=18% Similarity=0.209 Sum_probs=57.0
Q ss_pred cccccCCChhccCCCCCcEEEccCCccccc----CCcCCCCCCCCCEEeccCccc---eecCCccc-------cCCCCCC
Q 038605 14 TFQLGEIPREFGNLADLEQMSLWENNLRGE----IPLEIGNLQNLEELDLRQNKL---VGIVPAAI-------FNVSTLK 79 (485)
Q Consensus 14 ~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~i---~~~~~~~l-------~~l~~L~ 79 (485)
...+..++..+..+++|++|++++|.+... ++..+.++++|++|+|++|.+ ++..|..+ ..+++|+
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 345666777777777777777777776643 333466677777777776533 22223222 4566666
Q ss_pred EEEccCCccccc----cchhhhhcCCCccEEEccCcccc
Q 038605 80 LLQLQNNSLLGC----LSSIADVRLPNLEELSLWGNNFN 114 (485)
Q Consensus 80 ~L~L~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~ 114 (485)
+|++++|.+... .+..+ ..+++|++|++++|.+.
T Consensus 98 ~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 98 TVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp EEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCH
T ss_pred EEECCCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCC
Confidence 666666665542 11122 23556666666666554
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=3e-22 Score=190.04 Aligned_cols=250 Identities=18% Similarity=0.197 Sum_probs=167.3
Q ss_pred EEccCCCCCCcCCccccccccccccEEEcccccCCcCcc----hhhhcCC-CCCEEEcCCCcCCCCccccccCC-----C
Q 038605 183 IALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGIS----EEISNLT-NLTTINLGGNKLNGSIPIALGKL-----Q 252 (485)
Q Consensus 183 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~ 252 (485)
+.++.+.+.+..+ .+...+++++.|++++|.+....+ ..+..++ +|++|++++|.+.+..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVE--EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHH--HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHH--HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4566666654332 334455668888888888776665 6677777 78888888888876555445443 7
Q ss_pred CCCeEeccCccCCCCCCcc----cCCC-CCCCEEEccCCcCcccccccc----cC-CCCCcEEeCCCCcCCC-----CCc
Q 038605 253 KLQYLGLEDNKLEGSIPDD----ICRL-DELYELELGGNKLSGSIPACF----GN-LIALRILSLGSNELTS-----IPL 317 (485)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~l~~-----~~~ 317 (485)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+.......+ .. +++|++|++++|.+++ ++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 8888888888887655543 3334 788888888888775544433 33 3588888888888774 333
Q ss_pred cccCCC-CCcEEEccCCcCCCCCCccc----cCC-CCCCeEEccCCccccc----CcccccC-CCCCCEEECCCCccccc
Q 038605 318 TFWNLK-DILQLNISSNYFTGPLPLEI----GNL-KVLIGIDFSMNNFSGV----IPTEIGG-LKNLEYLFLGYNRLRGS 386 (485)
Q Consensus 318 ~~~~~~-~L~~L~l~~~~l~~~~~~~~----~~~-~~L~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~l~~~~l~~~ 386 (485)
.+...+ +|++|++++|++++..+..+ ..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.+.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 344454 78888888888876554433 344 4888888888887753 2334444 45888888888887754
Q ss_pred CC----ccccCCCCCCEEeCCCCccccc-------CcccccCCCCCCceeCCCCccccc
Q 038605 387 IP----DSFGDLISLKFLNLSNNNLFGA-------IPASLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 387 ~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~l~~l~~L~~L~l~~n~~~~~ 434 (485)
.+ ..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 3346677888888888874322 233556677788888888887644
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=7.5e-22 Score=185.69 Aligned_cols=224 Identities=21% Similarity=0.241 Sum_probs=114.5
Q ss_pred CCCEEeccCccceecCCccccCC--CCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccc-cchhhhcCCCCcE
Q 038605 53 NLEELDLRQNKLVGIVPAAIFNV--STLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGT-IPRFIFNASKLSI 129 (485)
Q Consensus 53 ~L~~L~L~~~~i~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~ 129 (485)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+... .+++|++|++++|.+.+. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCC--CCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhc--cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3566666666544 2334444 566666666666655444322 366666666666665543 5555666667777
Q ss_pred EEccCcccccccchhccCCCCCcEEEccCC-ccccCCCCccccccccCCCCCCEEEccCC-CCCCcCCcccccccccccc
Q 038605 130 LELVGNSFSGFIPNTFGNLRNLERLNLQDN-YLTSSTPELSFLSSLSNCKSLTLIALSNN-PLDGNLRKTSVGNLSHSLE 207 (485)
Q Consensus 130 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~ 207 (485)
|++++|.+++..+..++.+++|++|++++| .+.... .+..+..+++|+.|++++| .+.+..
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~l~~~~------------- 185 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKH------------- 185 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHH-------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCCCCCEEcCCCCCCcChHH-------------
Confidence 777666666555566666666777777666 333210 2223445566666666665 443211
Q ss_pred EEEcccccCCcCcchhhhcCC-CCCEEEcCCCc--CC-CCccccccCCCCCCeEeccCcc-CCCCCCcccCCCCCCCEEE
Q 038605 208 IFLMYNCNISGGISEEISNLT-NLTTINLGGNK--LN-GSIPIALGKLQKLQYLGLEDNK-LEGSIPDDICRLDELYELE 282 (485)
Q Consensus 208 ~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~ 282 (485)
++..+..++ +|++|++++|. +. +..+..+..+++|++|++++|. +++..+..+..+++|++|+
T Consensus 186 ------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 186 ------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp ------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred ------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 122233444 44555554442 22 1222333344455555555554 3333344444555555555
Q ss_pred ccCCc-CcccccccccCCCCCcEEeCCCC
Q 038605 283 LGGNK-LSGSIPACFGNLIALRILSLGSN 310 (485)
Q Consensus 283 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 310 (485)
+++|. +.......+..+++|+.|++++|
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 55552 22111223444555555555555
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.7e-22 Score=193.64 Aligned_cols=230 Identities=23% Similarity=0.229 Sum_probs=160.9
Q ss_pred hhhcCCCCCEEEcCCCcCC---CCccccc-------cCCCCCCeEeccCccCCCC----CCcccCCCCCCCEEEccCCcC
Q 038605 223 EISNLTNLTTINLGGNKLN---GSIPIAL-------GKLQKLQYLGLEDNKLEGS----IPDDICRLDELYELELGGNKL 288 (485)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~~---~~~~~~l-------~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~ 288 (485)
.+..+++|++|++++|.+. +..|..+ ..+++|++|++++|.++.. ++..+..+++|++|++++|.+
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 3556778888888776443 2223333 5678888888888887752 455667778888888888877
Q ss_pred cccccccc----cCC---------CCCcEEeCCCCcCCC--CC---ccccCCCCCcEEEccCCcCCCC-----CCccccC
Q 038605 289 SGSIPACF----GNL---------IALRILSLGSNELTS--IP---LTFWNLKDILQLNISSNYFTGP-----LPLEIGN 345 (485)
Q Consensus 289 ~~~~~~~~----~~~---------~~L~~L~l~~~~l~~--~~---~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~ 345 (485)
....+..+ ..+ ++|++|++++|.++. ++ ..+..+++|++|++++|++... .+..+..
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~ 214 (386)
T 2ca6_A 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence 54333323 333 788888888888873 33 3455678888888888887632 2225677
Q ss_pred CCCCCeEEccCCccc----ccCcccccCCCCCCEEECCCCccccc----CCcccc--CCCCCCEEeCCCCcccc----cC
Q 038605 346 LKVLIGIDFSMNNFS----GVIPTEIGGLKNLEYLFLGYNRLRGS----IPDSFG--DLISLKFLNLSNNNLFG----AI 411 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~--~~~~L~~L~l~~~~~~~----~~ 411 (485)
+++|++|++++|.++ ..++..+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+.+ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 888999999998885 45666778888999999999988754 345553 38889999999999886 36
Q ss_pred cccc-cCCCCCCceeCCCCcccccCCCC----CCCCCCCcccccCC
Q 038605 412 PASL-EKLSYLEDLNLSFNKLEGEIPRG----GSFGNFSAESFEGN 452 (485)
Q Consensus 412 ~~~l-~~l~~L~~L~l~~n~~~~~~p~~----~~~~~L~~l~l~~n 452 (485)
+..+ ..+++|++|++++|++.+..+.. ..++.++.++++.+
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 6666 55899999999999987655311 44555555555544
No 95
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=8.3e-20 Score=160.03 Aligned_cols=155 Identities=25% Similarity=0.287 Sum_probs=134.3
Q ss_pred cEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 303 RILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
+.++.+++.++.+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+....+..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 577888888888887543 688999999999887777788889999999999999988888889999999999999999
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC-CCCCCCCCcccccCCCCccCCC
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGSP 459 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~L~~l~l~~np~~c~~p 459 (485)
++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+. ...+++|+.+++++|||.|+|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9866666688899999999999999988888899999999999999999866554 4778999999999999999994
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=2.2e-19 Score=158.41 Aligned_cols=159 Identities=22% Similarity=0.231 Sum_probs=134.6
Q ss_pred CCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCC
Q 038605 301 ALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 380 (485)
Q Consensus 301 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 380 (485)
+.+.++.+++.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45678888888888887543 8899999999999887778888899999999999998876667788899999999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC-CCCCCCCCcccccCCCCccCCC
Q 038605 381 NRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGSP 459 (485)
Q Consensus 381 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~L~~l~l~~np~~c~~p 459 (485)
|+++...+..|..+++|++|++++|.+. .+|..+..+++|++|++++|++.+..+. ...+++|+.+++.+|||.|+|+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 9998666677888999999999999998 6788888999999999999999754443 3788999999999999999997
Q ss_pred CCC
Q 038605 460 NLQ 462 (485)
Q Consensus 460 ~~~ 462 (485)
...
T Consensus 177 ~~~ 179 (229)
T 3e6j_A 177 DIM 179 (229)
T ss_dssp GGH
T ss_pred hhH
Confidence 443
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=156.87 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=103.4
Q ss_pred cEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCC-ccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCC
Q 038605 303 RILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLP-LEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 381 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 381 (485)
+.++++++.++.+|..+ .+.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45666666666666543 2345667777776665432 34566677777777777776665556777777777777777
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCC
Q 038605 382 RLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSP 459 (485)
Q Consensus 382 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p 459 (485)
.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..|.. ..+++|+.|++++|||.|+|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 776555556677777777777777777666666777777777777777776555543 667777777777777777774
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.4e-19 Score=169.15 Aligned_cols=226 Identities=18% Similarity=0.141 Sum_probs=164.1
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCC-CcccCCCCCCCE-EEccCCcCcccccccccCCCCCcEE
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSI-PDDICRLDELYE-LELGGNKLSGSIPACFGNLIALRIL 305 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~-L~l~~~~~~~~~~~~~~~~~~L~~L 305 (485)
+++++|++++|.++...+..|..+++|++|++++|.+.+.+ +.+|.+++++.. +.+++|.+....+..|..+++|+.|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 57888888888887555556788888888888888875543 346777777665 4555677776667778888888888
Q ss_pred eCCCCcCCCCCc-cccCCCCCcEEEccC-CcCCCCCCccccCCC-CCCeEEccCCcccccCcccccCCCCCCEEECCC-C
Q 038605 306 SLGSNELTSIPL-TFWNLKDILQLNISS-NYFTGPLPLEIGNLK-VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY-N 381 (485)
Q Consensus 306 ~l~~~~l~~~~~-~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~ 381 (485)
++++|.+..++. .+....++..+++.+ +.+.......+..+. .++.|++++|.+....+.++. .++|++|++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCC
Confidence 888888888664 344566777787755 455544445555553 678899999988865555444 46789999975 4
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCCCccCC
Q 038605 382 RLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 382 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
.+....++.|..+++|+.|++++|+++. +|. ..+.+|+.|.+.++...+.+|....+++|+.+++. +|+.|.|
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~-~~~~c~~ 261 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT-YPSHCCA 261 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS-CHHHHHH
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCC-CCccccc
Confidence 5664444678889999999999999884 443 23567777877777777788988889999999886 5567755
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.4e-18 Score=151.18 Aligned_cols=155 Identities=25% Similarity=0.277 Sum_probs=87.3
Q ss_pred CCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEcc
Q 038605 277 ELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFS 355 (485)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 355 (485)
++++|++++|.+....+..+..+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444433333334444444444444444444333 23344555555555555554444444555666666666
Q ss_pred CCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccC
Q 038605 356 MNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEI 435 (485)
Q Consensus 356 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 435 (485)
+|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.. .+++|++|++..|++++.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 666655444556666777777777777765545556667777777777776542 4456777777777777777
Q ss_pred CCC
Q 038605 436 PRG 438 (485)
Q Consensus 436 p~~ 438 (485)
|..
T Consensus 182 p~~ 184 (208)
T 2o6s_A 182 RNS 184 (208)
T ss_dssp BCT
T ss_pred ecc
Confidence 753
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.9e-18 Score=149.13 Aligned_cols=166 Identities=22% Similarity=0.183 Sum_probs=103.1
Q ss_pred CEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCC
Q 038605 279 YELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMN 357 (485)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 357 (485)
+.++.+++.+... +.. ..++|+.|++++|.++.++. .+..+++|++|++++|++.+.....+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4555555555432 222 23467777777777766554 3456677777777777766555555666677777777777
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC
Q 038605 358 NFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 358 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 437 (485)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 76655555566667777777777776655555566667777777777766655555566667777777777766533
Q ss_pred CCCCCCCCcccccCCC
Q 038605 438 GGSFGNFSAESFEGNE 453 (485)
Q Consensus 438 ~~~~~~L~~l~l~~np 453 (485)
++.|+.+++.+|.
T Consensus 164 ---~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 164 ---CPGIRYLSEWINK 176 (208)
T ss_dssp ---TTTTHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHh
Confidence 3455666665554
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=4.9e-19 Score=167.65 Aligned_cols=157 Identities=24% Similarity=0.225 Sum_probs=88.8
Q ss_pred CcEEeCCCCcCCCCCcc-cc-CCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECC
Q 038605 302 LRILSLGSNELTSIPLT-FW-NLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLG 379 (485)
Q Consensus 302 L~~L~l~~~~l~~~~~~-~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 379 (485)
++.|++++|.++.++.. +. .+++|++|++++|++.+..+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444444444443322 22 44555555555555554444445555556666666665555444556666666666666
Q ss_pred CCcccccCCccccCCCCCCEEeCCCCcccccCcccc---cCCCCCCceeCCCCcccccCCCC--CCCCC--CCcccccCC
Q 038605 380 YNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASL---EKLSYLEDLNLSFNKLEGEIPRG--GSFGN--FSAESFEGN 452 (485)
Q Consensus 380 ~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~p~~--~~~~~--L~~l~l~~n 452 (485)
+|++....+..|..+++|++|+|++|.+....+..+ ..+++|+.|++++|++. .+|.. ..++. ++.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence 666665555666666666666666666664333333 45667777777777765 33321 33333 366788888
Q ss_pred CCccCCC
Q 038605 453 ELLCGSP 459 (485)
Q Consensus 453 p~~c~~p 459 (485)
||.|+|.
T Consensus 200 ~~~C~C~ 206 (361)
T 2xot_A 200 PLECDCK 206 (361)
T ss_dssp CEECCHH
T ss_pred CccCCcC
Confidence 8888873
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=7.8e-18 Score=158.77 Aligned_cols=244 Identities=16% Similarity=0.153 Sum_probs=168.6
Q ss_pred cccc-cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCcccee-cCCccccCCCCCCE-
Q 038605 4 CFRR-TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVG-IVPAAIFNVSTLKL- 80 (485)
Q Consensus 4 ~~~~-~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~~~~l~~l~~L~~- 80 (485)
|.+. ..+.|.++.++++|..+ .+++++|+|++|.++...+.+|.++++|++|+|++|.+.+ +.+.+|.+++++++
T Consensus 7 C~C~~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~ 84 (350)
T 4ay9_X 7 CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI 84 (350)
T ss_dssp SEEETTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred cEeeCCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence 4442 45888889999999988 4689999999999996666789999999999999998754 44567888988775
Q ss_pred EEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccC-cccccccchhccCCC-CCcEEEccC
Q 038605 81 LQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVG-NSFSGFIPNTFGNLR-NLERLNLQD 158 (485)
Q Consensus 81 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~-~L~~L~l~~ 158 (485)
+.+.+|.+....+..+ ..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 85 l~~~~N~l~~l~~~~f-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 85 RIEKANNLLYINPEAF-QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEETTCCEECTTSB-CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hcccCCcccccCchhh-hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 5556677776544443 3588888888888888755555555666777777755 355555555565553 577777777
Q ss_pred CccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEccc-ccCCcCcchhhhcCCCCCEEEcCC
Q 038605 159 NYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYN-CNISGGISEEISNLTNLTTINLGG 237 (485)
Q Consensus 159 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~ 237 (485)
|.+..++.. ..... +++.+.+.+ +.+....+..+..+++|++|++++
T Consensus 164 N~i~~i~~~------~f~~~--------------------------~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 164 NGIQEIHNS------AFNGT--------------------------QLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp SCCCEECTT------SSTTE--------------------------EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred ccccCCChh------hcccc--------------------------chhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 777654321 11222 344444443 223333334567889999999999
Q ss_pred CcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCC
Q 038605 238 NKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGN 286 (485)
Q Consensus 238 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 286 (485)
|.++...+. .+.+|+.|.+.++......| .+..+++|+.+++.++
T Consensus 212 N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 212 TRIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp SCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CCcCccChh---hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 998844333 35677777776665444556 4788999999998764
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3e-18 Score=156.98 Aligned_cols=171 Identities=24% Similarity=0.358 Sum_probs=88.5
Q ss_pred hcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcE
Q 038605 225 SNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRI 304 (485)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (485)
..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 3455666666666666522 2 35556666666666666654322 55666666666666655432 23555556666
Q ss_pred EeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccc
Q 038605 305 LSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR 384 (485)
Q Consensus 305 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 384 (485)
|++++|.++.++ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 666665555543 344455555555555555433 344445555555555555443322 444555555555555544
Q ss_pred ccCCccccCCCCCCEEeCCCCccc
Q 038605 385 GSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 385 ~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
+ ++ .+..+++|+.|++++|++.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 2 11 2444455555555555444
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.8e-18 Score=149.40 Aligned_cols=154 Identities=22% Similarity=0.277 Sum_probs=124.9
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCc
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS 87 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~ 87 (485)
..++|.++.++++|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 457888889999998875 689999999999997777789999999999999999998888899999999999999998
Q ss_pred cccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccC
Q 038605 88 LLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSS 164 (485)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 164 (485)
+....... +..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+...
T Consensus 92 l~~l~~~~-f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSL-FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhH-ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 87544433 33588888888888888766677777888888888888888777666677777777777777766543
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=8.9e-18 Score=166.54 Aligned_cols=182 Identities=24% Similarity=0.285 Sum_probs=123.2
Q ss_pred CCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCC
Q 038605 229 NLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLG 308 (485)
Q Consensus 229 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 308 (485)
+++.|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+.+ ++. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777764 44433 367777777777777 344 345777777777777765 333 433 77777777
Q ss_pred CCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCC
Q 038605 309 SNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIP 388 (485)
Q Consensus 309 ~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~ 388 (485)
+|.++.+|. .+++|+.|++++|.+++. +. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 777777765 567777777777777653 22 45677778888877775 444 44 77888888888777 455
Q ss_pred ccccCCCCC-------CEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC
Q 038605 389 DSFGDLISL-------KFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR 437 (485)
Q Consensus 389 ~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 437 (485)
. +.. +| +.|++++|.+. .+|..+..+++|+.|++++|++++.+|.
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 4 443 56 78888888777 5666666678888888888887765553
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.5e-18 Score=156.54 Aligned_cols=186 Identities=23% Similarity=0.313 Sum_probs=139.7
Q ss_pred EEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcC
Q 038605 233 INLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNEL 312 (485)
Q Consensus 233 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 312 (485)
+.+....+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 29 ~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 29 DNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred HHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence 34455544422 2244677888888888888744 347778888888888888875443 77888888888888888
Q ss_pred CCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCcccc
Q 038605 313 TSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFG 392 (485)
Q Consensus 313 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 392 (485)
+.++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+..+ +.
T Consensus 103 ~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 103 KDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 88764 67788888888888888754 4677888888888888888754 567788888888888888875433 77
Q ss_pred CCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccc
Q 038605 393 DLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEG 433 (485)
Q Consensus 393 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 433 (485)
.+++|++|++++|.+.+ ++ .+..+++|+.|++++|++..
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 88888888888888874 33 47788888888888888763
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=150.31 Aligned_cols=132 Identities=27% Similarity=0.320 Sum_probs=70.2
Q ss_pred cEEeCCCCcCCCCCc--cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCC
Q 038605 303 RILSLGSNELTSIPL--TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 380 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 380 (485)
+.|++++|.++.++. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 444444444444311 233444455555555544444444445555555555555555544444555556666666666
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccccc
Q 038605 381 NRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 381 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 434 (485)
|++++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|++...
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 665555555555566666666666666555555555666666666666665543
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.4e-17 Score=146.80 Aligned_cols=154 Identities=25% Similarity=0.286 Sum_probs=122.5
Q ss_pred ccccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 7 RTSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 7 ~~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
...++|.+..++++|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++...+..|..+++|++|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3458888888999998774 78999999999998777888889999999999999988777777888999999999999
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccC
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSS 164 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 164 (485)
.+.......+. .+++|++|++++|.+. .+|..+..+++|++|++++|.+....+..|..+++|+.|++++|.+...
T Consensus 99 ~l~~l~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 99 QLTVLPSAVFD-RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCCCTTTTT-TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cCCccChhHhC-cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 88765444333 4888888888888887 6677777888888888888887766666677777777777777766543
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.5e-17 Score=165.15 Aligned_cols=171 Identities=24% Similarity=0.357 Sum_probs=86.0
Q ss_pred hcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcE
Q 038605 225 SNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRI 304 (485)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 304 (485)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+... ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 344555556666555542 22 34555555566665555553322 55555555555555555432 23455555555
Q ss_pred EeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccc
Q 038605 305 LSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLR 384 (485)
Q Consensus 305 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 384 (485)
|++++|.+..++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|++.
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 555555555543 244455555555555555433 344455555555555555543322 444555555555555554
Q ss_pred ccCCccccCCCCCCEEeCCCCccc
Q 038605 385 GSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 385 ~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
+. ..+..+++|+.|+|++|++.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEE
T ss_pred CC--hHHccCCCCCEEEccCCcCc
Confidence 22 23444555555555555544
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=9.8e-18 Score=158.72 Aligned_cols=179 Identities=26% Similarity=0.236 Sum_probs=146.1
Q ss_pred cccccccccccCCChhccCCCCCcEEEccCCcccccCCcCCC-CCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 8 TSDNFLTFQLGEIPREFGNLADLEQMSLWENNLRGEIPLEIG-NLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 8 ~~~~~~~~~~~~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
..++|.++.++.+|..+. ..+++|+|++|.+++..+..|. ++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 457888889999998874 4789999999999977777787 8999999999999999888888999999999999999
Q ss_pred ccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhc---cCCCCCcEEEccCCcccc
Q 038605 87 SLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTF---GNLRNLERLNLQDNYLTS 163 (485)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~ 163 (485)
.+.......+. .+++|++|++++|.+....+..+..+++|++|++++|.+....+..| ..+++|+.|++++|.+..
T Consensus 99 ~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFS-DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCcCCHHHhC-CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 98865544443 58999999999999987778889999999999999999987665555 568999999999998887
Q ss_pred CCCCccccccccCCCC--CCEEEccCCCCCCcC
Q 038605 164 STPELSFLSSLSNCKS--LTLIALSNNPLDGNL 194 (485)
Q Consensus 164 ~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~ 194 (485)
.+ ...+..++. ++.+++++|++..+.
T Consensus 178 l~-----~~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 178 LP-----LTDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp CC-----HHHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cC-----HHHhhhccHhhcceEEecCCCccCCc
Confidence 63 234555555 477888888876544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.5e-17 Score=165.24 Aligned_cols=168 Identities=30% Similarity=0.406 Sum_probs=76.6
Q ss_pred ccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEc
Q 038605 204 HSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELEL 283 (485)
Q Consensus 204 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 283 (485)
+.|+.|++.++.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence 3444444444444322 1 24444555555555554443222 44445555555555544421 13444455555555
Q ss_pred cCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccC
Q 038605 284 GGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVI 363 (485)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 363 (485)
++|.+... ..+..+++|+.|++++|.++.+ ..+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+.
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l- 190 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 190 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-
Confidence 55544421 2344445555555555554444 233444555555555554443322 44445555555555544432
Q ss_pred cccccCCCCCCEEECCCCccc
Q 038605 364 PTEIGGLKNLEYLFLGYNRLR 384 (485)
Q Consensus 364 ~~~~~~l~~L~~L~l~~~~l~ 384 (485)
..+..+++|+.|++++|++.
T Consensus 191 -~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 -RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GGGTTCTTCSEEECCSEEEE
T ss_pred -hHHccCCCCCEEEccCCcCc
Confidence 23444455555555555444
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1e-17 Score=144.27 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=67.5
Q ss_pred ccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCE
Q 038605 296 FGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEY 375 (485)
Q Consensus 296 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 375 (485)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 333444444444444333332 3334455555555555554434444555555555555555555444555555666666
Q ss_pred EECCCCc-ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccc
Q 038605 376 LFLGYNR-LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 376 L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 432 (485)
|++++|. +. ..+ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|++.
T Consensus 141 L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 141 IDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred EEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 6666665 43 222 45556666666666666653 22 4555666666666666553
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=8.6e-18 Score=144.68 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=134.2
Q ss_pred cCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEE
Q 038605 297 GNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL 376 (485)
Q Consensus 297 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 376 (485)
..+++|+.|++++|.+++++ .+..+++|++|++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56788999999999999988 68889999999999997653 3478899999999999999998778889999999999
Q ss_pred ECCCCcccccCCccccCCCCCCEEeCCCCc-ccccCcccccCCCCCCceeCCCCcccccCCCCCCCCCCCcccccCCC
Q 038605 377 FLGYNRLRGSIPDSFGDLISLKFLNLSNNN-LFGAIPASLEKLSYLEDLNLSFNKLEGEIPRGGSFGNFSAESFEGNE 453 (485)
Q Consensus 377 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~L~~l~l~~np 453 (485)
++++|.+++..+..+..+++|++|++++|. +. .++ .+..+++|++|++++|++. .++....+++|+.|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCTTGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChHHhccCCCCCEEEeeCcc
Confidence 999999997778889999999999999998 65 455 6889999999999999997 46677899999999999998
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.74 E-value=5.4e-17 Score=160.93 Aligned_cols=168 Identities=26% Similarity=0.354 Sum_probs=119.1
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSL 307 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 307 (485)
++|++|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+.+ .+. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 56777777777776 344 345777777777777775 444 443 77777777777765 333 5677888888
Q ss_pred CCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCC-------CEEECCC
Q 038605 308 GSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNL-------EYLFLGY 380 (485)
Q Consensus 308 ~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------~~L~l~~ 380 (485)
++|.++.+|. .+++|++|++++|.+++ .+. +. ++|+.|++++|.++ .+|. +.. +| +.|++++
T Consensus 148 s~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 148 DNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE 216 (571)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred CCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence 8888777775 45778888888887775 333 43 77888888888777 3444 443 56 9999999
Q ss_pred CcccccCCccccCCCCCCEEeCCCCcccccCcccccCCC
Q 038605 381 NRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLS 419 (485)
Q Consensus 381 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 419 (485)
|.++ .+|..+..+++|+.|++++|++.+..|..+..++
T Consensus 217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 9998 6777777799999999999999887777766543
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.8e-17 Score=139.82 Aligned_cols=130 Identities=25% Similarity=0.349 Sum_probs=65.0
Q ss_pred cEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCc-cccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCC
Q 038605 303 RILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPL-EIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 381 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 381 (485)
+.++++++.++.+|..+. .++++|++++|.+.+..+. .+..+++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 444555555554444322 2455555555555433332 2445555555555555555444445555555555555555
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccccc
Q 038605 382 RLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 382 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 434 (485)
++++..+..|..+++|++|++++|++.+..|..+..+++|++|++++|++.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 55544444455555555555555555544455555555555555555555433
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=3.2e-17 Score=147.70 Aligned_cols=170 Identities=19% Similarity=0.239 Sum_probs=141.8
Q ss_pred CCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEc
Q 038605 251 LQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNI 330 (485)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 330 (485)
+.++..++++++.+++.. .+..+++|+.|++++|.+... + .+..+++|+.|++++|.++.++. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence 445667788888887543 577889999999999988743 3 68889999999999999999887 888999999999
Q ss_pred cCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 038605 331 SSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGA 410 (485)
Q Consensus 331 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~ 410 (485)
++|++.+... +.. ++|++|++++|.+.+. ..+..+++|++|++++|++++. ..+..+++|++|++++|++.+.
T Consensus 93 ~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 9999986433 223 8999999999998863 3588899999999999999854 3688899999999999999865
Q ss_pred CcccccCCCCCCceeCCCCccccc
Q 038605 411 IPASLEKLSYLEDLNLSFNKLEGE 434 (485)
Q Consensus 411 ~~~~l~~l~~L~~L~l~~n~~~~~ 434 (485)
..+..+++|+.|++++|++...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6788899999999999998744
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.9e-17 Score=147.11 Aligned_cols=170 Identities=21% Similarity=0.268 Sum_probs=145.8
Q ss_pred CCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEe
Q 038605 227 LTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILS 306 (485)
Q Consensus 227 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 306 (485)
+.+++.++++++.+.+. + .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 45667778888888733 3 57788999999999999984 34 68899999999999999986544 88999999999
Q ss_pred CCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccccc
Q 038605 307 LGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGS 386 (485)
Q Consensus 307 l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 386 (485)
+++|.++.++.... ++|+.|++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|++.+.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch
Confidence 99999999876443 9999999999999864 4688999999999999999864 3688899999999999999855
Q ss_pred CCccccCCCCCCEEeCCCCccccc
Q 038605 387 IPDSFGDLISLKFLNLSNNNLFGA 410 (485)
Q Consensus 387 ~~~~~~~~~~L~~L~l~~~~~~~~ 410 (485)
..+..+++|+.|++++|++...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 6789999999999999999754
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=3.9e-17 Score=152.59 Aligned_cols=290 Identities=14% Similarity=0.083 Sum_probs=141.6
Q ss_pred CCCCcEEEccCCcccccCCcCCCC-CCCCCEEeccCccce--ecCCccccCCCCCCEEEccCCccccccchhhhhc----
Q 038605 27 LADLEQMSLWENNLRGEIPLEIGN-LQNLEELDLRQNKLV--GIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVR---- 99 (485)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~L~~~~i~--~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~---- 99 (485)
+.+++.|.++++ +.......+.. +++|++|+|++|++. ......+ +.++.+.+..+. ++...+..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~----I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF----VPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE----ECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccc----cCHHHhcccccc
Confidence 456777777764 22111112222 677777777777766 2222222 223444444442 22333444
Q ss_pred ----CCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCcccccccc
Q 038605 100 ----LPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLS 175 (485)
Q Consensus 100 ----l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~ 175 (485)
+++|+.++++. .++...+.+|.++++|++++++++.+..+.+.+|..+.++..+.............+ ....|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i-~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW-EHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT-TTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc-cccccc
Confidence 66677777766 555445556666677777777666666566666666555555544432110000000 011233
Q ss_pred CCCCCC-EEEccCCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCC
Q 038605 176 NCKSLT-LIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKL 254 (485)
Q Consensus 176 ~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 254 (485)
.+..|+ .+.+..... .. ......-....+++.+.+.+.-...........+++|
T Consensus 174 ~~~~L~~~i~~~~~~~---l~----------------------~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L 228 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGK---LE----------------------DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228 (329)
T ss_dssp ESCCCEEEEEECTTCC---HH----------------------HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred cccccceeEEecCCCc---HH----------------------HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence 344443 222221110 00 0000000112344444444332110000111124566
Q ss_pred CeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCc-EEeCCCCcCCCCC-ccccCCCCCcEEEccC
Q 038605 255 QYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALR-ILSLGSNELTSIP-LTFWNLKDILQLNISS 332 (485)
Q Consensus 255 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~ 332 (485)
+.+++++|.++.....+|.++++|+.+++.++ +.......|..|++|+ .+.+.+ .++.++ .+|..+++|+.+++.+
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECS
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCC
Confidence 66666666665555555666666666666665 4444555566666666 666666 555543 3555666666666666
Q ss_pred CcCCCCCCccccCCCCCCeEE
Q 038605 333 NYFTGPLPLEIGNLKVLIGID 353 (485)
Q Consensus 333 ~~l~~~~~~~~~~~~~L~~L~ 353 (485)
+.+......+|..+++|++++
T Consensus 307 n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 307 DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SCCCEECTTTTCTTCCCCEEE
T ss_pred CccCccchhhhcCCcchhhhc
Confidence 666655555666666666654
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=9.6e-16 Score=130.99 Aligned_cols=129 Identities=25% Similarity=0.343 Sum_probs=71.7
Q ss_pred cEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 303 RILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
+.++++++.++.+|..+ .++|++|++++|.+. .+|..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-------------------------~ip~~~~~l~~L~~L~Ls~N~ 65 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-------------------------LVPKELSNYKHLTLIDLSNNR 65 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-------------------------SCCGGGGGCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-------------------------hhHHHhhcccCCCEEECCCCc
Confidence 45666666666666433 245555555555554 223344455555555555555
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC-CCCCCCCCcccccCCCCccCC
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~L~~l~l~~np~~c~~ 458 (485)
++...+..|..+++|++|++++|.+....+..+..+++|++|++++|++....+. ...+++|+.+++++|||.|+|
T Consensus 66 i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 66 ISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 5544444555555555555555555544445555556666666666665532222 245666666667777777777
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.1e-15 Score=130.81 Aligned_cols=173 Identities=23% Similarity=0.290 Sum_probs=113.5
Q ss_pred CEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc--cccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccC
Q 038605 279 YELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL--TFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSM 356 (485)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 356 (485)
+.++++++.+.. ++..+. .+++.|++++|.++.++. .+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 456666666542 233222 267777777777776654 266777777777777777776677777788888888888
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcc-cccCCCCCCceeCCCCcccccC
Q 038605 357 NNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPA-SLEKLSYLEDLNLSFNKLEGEI 435 (485)
Q Consensus 357 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~n~~~~~~ 435 (485)
|.+.+..+..|.++++|++|++++|++++..+..+..+++|++|++++|++....+. ++. ..++...+.++......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCC
Confidence 888877777788888888888888888877788888888899999999888743221 111 11222233333333233
Q ss_pred CCCCCCCCCCcccccCCCCccCC
Q 038605 436 PRGGSFGNFSAESFEGNELLCGS 458 (485)
Q Consensus 436 p~~~~~~~L~~l~l~~np~~c~~ 458 (485)
| ..+......++..+.+.|..
T Consensus 166 P--~~l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 166 P--SKVRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp S--TTTTTSBGGGSCTTTCCCCC
T ss_pred C--hHHcCCChhhCcHhhcCcCC
Confidence 3 33444555666777666754
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=2.1e-14 Score=137.49 Aligned_cols=335 Identities=14% Similarity=0.089 Sum_probs=172.0
Q ss_pred ccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccch
Q 038605 40 LRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPR 119 (485)
Q Consensus 40 ~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 119 (485)
++.+...+|.++.+|+.+.|..+ ++.+...+|.+|.+|+.+++.++ +.. +....+..+.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~-I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKM-IGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCE-ECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceE-ccchhhcccccchhhcccCc-eeeecce
Confidence 44455556777777777777643 66566667777777777777654 332 33334444666666655543 2223334
Q ss_pred hhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCcccc
Q 038605 120 FIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSV 199 (485)
Q Consensus 120 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 199 (485)
.+..+..++...... .......+|.++++|+.+.+..+. ...+. ..|.++.+|+.+.+..+-
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~-----~~F~~c~~L~~i~l~~~~---------- 196 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHN-----GLFSGCGKLKSIKLPRNL---------- 196 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECT-----TTTTTCTTCCBCCCCTTC----------
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceecc-----ccccCCCCceEEEcCCCc----------
Confidence 444443322222211 122333456666666666665432 22211 235555666655543321
Q ss_pred ccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCC
Q 038605 200 GNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELY 279 (485)
Q Consensus 200 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 279 (485)
.......+.++..|+.+.+..+... .........+|+.+.+.... +......+..+..++
T Consensus 197 -----------------~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 197 -----------------KIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLE 256 (394)
T ss_dssp -----------------CEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCC
T ss_pred -----------------eEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccce
Confidence 0011122444555555555443221 11222334556666665432 223334556666666
Q ss_pred EEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcc
Q 038605 280 ELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNF 359 (485)
Q Consensus 280 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 359 (485)
.+.+..+... .....|..+..++.+......+.. ..+..+.+|+.+.+.++ +......+|..|.+|+.+++..+ +
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v 331 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V 331 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c
Confidence 6666655332 344456666666666655433222 13445666666666543 33344455666666776666543 3
Q ss_pred cccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCce
Q 038605 360 SGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDL 424 (485)
Q Consensus 360 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 424 (485)
......+|.+|++|+.+++..+ ++.....+|.+|.+|+.+++..+ +. ....++..+++|+.+
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 3344456667777777777654 54455566777777777766543 22 223455566655543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=8.1e-16 Score=128.69 Aligned_cols=135 Identities=21% Similarity=0.146 Sum_probs=94.0
Q ss_pred CCCCcEEeCCCCcCC--CCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEE
Q 038605 299 LIALRILSLGSNELT--SIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL 376 (485)
Q Consensus 299 ~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 376 (485)
.++|+.|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777776 5666666677777777777776644 556667777777777777776566666667778888
Q ss_pred ECCCCcccccC-CccccCCCCCCEEeCCCCcccccCc---ccccCCCCCCceeCCCCcccccCC
Q 038605 377 FLGYNRLRGSI-PDSFGDLISLKFLNLSNNNLFGAIP---ASLEKLSYLEDLNLSFNKLEGEIP 436 (485)
Q Consensus 377 ~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~n~~~~~~p 436 (485)
++++|.+++.. +..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+. .+|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence 88888776432 2567777888888888887774443 36777788888888888775 344
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.3e-18 Score=171.67 Aligned_cols=194 Identities=21% Similarity=0.166 Sum_probs=131.1
Q ss_pred cCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCc-------------CcccccccccCCCCCcEEe-CCCCcCCC
Q 038605 249 GKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNK-------------LSGSIPACFGNLIALRILS-LGSNELTS 314 (485)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~l~~ 314 (485)
...++|+.|++++|.+. .+|..+..+++|+.|++++|. ..+..+..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34556666666666655 445555566666666655443 2333444555666666666 44443322
Q ss_pred CCc------ccc--CCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCccccc
Q 038605 315 IPL------TFW--NLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGS 386 (485)
Q Consensus 315 ~~~------~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 386 (485)
++. .+. ....|+.|++++|.+++. +. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 211 000 113588888888888763 33 778888888888888888 567788888888888888888884
Q ss_pred CCccccCCCCCCEEeCCCCcccccC-cccccCCCCCCceeCCCCcccccCCCC----CCCCCCCccc
Q 038605 387 IPDSFGDLISLKFLNLSNNNLFGAI-PASLEKLSYLEDLNLSFNKLEGEIPRG----GSFGNFSAES 448 (485)
Q Consensus 387 ~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~----~~~~~L~~l~ 448 (485)
+| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|++.+..|.. ..+++|+.|+
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 55 7888888888888888888665 888888888888888888888666544 2367777664
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=2.7e-15 Score=125.49 Aligned_cols=137 Identities=25% Similarity=0.309 Sum_probs=109.1
Q ss_pred CCCCCcEEEccCCccc-ccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCcc
Q 038605 26 NLADLEQMSLWENNLR-GEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLE 104 (485)
Q Consensus 26 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 104 (485)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....+.... .+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-KLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH-HCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh-hCCCCC
Confidence 3478999999999987 56777788899999999999988865 7788899999999999988865555443 488999
Q ss_pred EEEccCcccccc-cchhhhcCCCCcEEEccCcccccccc---hhccCCCCCcEEEccCCccccCC
Q 038605 105 ELSLWGNNFNGT-IPRFIFNASKLSILELVGNSFSGFIP---NTFGNLRNLERLNLQDNYLTSST 165 (485)
Q Consensus 105 ~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~ 165 (485)
+|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.....+
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999988743 22677888888888888888876554 46778888888888888776553
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=1.4e-15 Score=142.05 Aligned_cols=259 Identities=16% Similarity=0.087 Sum_probs=145.5
Q ss_pred CCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCC--cCcchhhhcCCCCCEEEcCCCcCCCCccccccC----
Q 038605 177 CKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNIS--GGISEEISNLTNLTTINLGGNKLNGSIPIALGK---- 250 (485)
Q Consensus 177 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---- 250 (485)
+.+++.|.++++-... ....+....++|+.|+++++.+. ..... .++.+..+....+.+ ....|..
T Consensus 24 ~~~l~~L~l~g~i~~~--~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAE--DFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECHH--HHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hCceeEEEEeccccHH--HHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhcccccc
Confidence 4567788877642111 11122222367888888887766 11111 112233344444432 2234555
Q ss_pred ----CCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCc----CCCCC-ccccC
Q 038605 251 ----LQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNE----LTSIP-LTFWN 321 (485)
Q Consensus 251 ----~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----l~~~~-~~~~~ 321 (485)
+++|+.|.+.+ .++.....+|.++++|+.+++++|.+.......|..+.++..+...... ...+. ..+..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77888888877 6666666777888888888888877766666677777766666655421 11111 11222
Q ss_pred CCCCc--------------------------EEEccCCcCCCCCCccc-cCCCCCCeEEccCCcccccCcccccCCCCCC
Q 038605 322 LKDIL--------------------------QLNISSNYFTGPLPLEI-GNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE 374 (485)
Q Consensus 322 ~~~L~--------------------------~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 374 (485)
+..|+ .+.+.+.-.. .....+ ..+++|+++++++|.+......+|.++++|+
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 33333 2222111000 000001 1267777777777777766666777777777
Q ss_pred EEECCCCcccccCCccccCCCCCC-EEeCCCCcccccCcccccCCCCCCceeCCCCcccccCCC-CCCCCCCCcc
Q 038605 375 YLFLGYNRLRGSIPDSFGDLISLK-FLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPR-GGSFGNFSAE 447 (485)
Q Consensus 375 ~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~~~L~~l 447 (485)
+|++.++ ++.....+|..+++|+ .+++.+ .+....+.+|..+++|+.|++.+|.+...-+. ....++|+.+
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 7777776 6556666777777777 777776 56555566777777777777777777532221 2455555544
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=2.9e-15 Score=126.49 Aligned_cols=129 Identities=23% Similarity=0.259 Sum_probs=63.8
Q ss_pred CcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCC
Q 038605 302 LRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYN 381 (485)
Q Consensus 302 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 381 (485)
.+.++++++.++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 456666666666666432 245666666666665444444445555555555555554433334444555555555555
Q ss_pred cccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCccc
Q 038605 382 RLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 382 ~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 432 (485)
.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 544333333444444444444444444333333344444444444444443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4.8e-18 Score=169.40 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=141.8
Q ss_pred hcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCcc-------------CCCCCCcccCCCCCCCEEE-ccCCcCcc
Q 038605 225 SNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNK-------------LEGSIPDDICRLDELYELE-LGGNKLSG 290 (485)
Q Consensus 225 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~l~~~~~L~~L~-l~~~~~~~ 290 (485)
..+++|+.|++++|.+. .+|..+..+++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 34566666667666665 456666666666666665543 3334455566666777776 44443221
Q ss_pred ccc-----cccc--CCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccC
Q 038605 291 SIP-----ACFG--NLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVI 363 (485)
Q Consensus 291 ~~~-----~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 363 (485)
... ..+. ....|+.|++++|.++.+|. +..+++|+.|++++|.+. ..+..+..+++|++|++++|.+++ +
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 100 0011 11358899999999999886 888999999999999998 667788899999999999999986 5
Q ss_pred cccccCCCCCCEEECCCCcccccC-CccccCCCCCCEEeCCCCcccccCcc---cccCCCCCCceeC
Q 038605 364 PTEIGGLKNLEYLFLGYNRLRGSI-PDSFGDLISLKFLNLSNNNLFGAIPA---SLEKLSYLEDLNL 426 (485)
Q Consensus 364 ~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l 426 (485)
| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++.+..+. .+..+++|+.|++
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5 7889999999999999998665 88899999999999999999865442 2344888888864
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.8e-15 Score=123.77 Aligned_cols=127 Identities=19% Similarity=0.130 Sum_probs=84.3
Q ss_pred CCCCcEEeCCCCcCC--CCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEE
Q 038605 299 LIALRILSLGSNELT--SIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYL 376 (485)
Q Consensus 299 ~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 376 (485)
.++|+.|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.++..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356667777777666 4666666667777777777766644 456666777777777777765556666667777777
Q ss_pred ECCCCccccc-CCccccCCCCCCEEeCCCCcccccCc---ccccCCCCCCceeCC
Q 038605 377 FLGYNRLRGS-IPDSFGDLISLKFLNLSNNNLFGAIP---ASLEKLSYLEDLNLS 427 (485)
Q Consensus 377 ~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 427 (485)
++++|++++. .+..+..+++|++|++++|++.+..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777642 23556677777777777777765444 356667777777765
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=4.2e-15 Score=121.58 Aligned_cols=128 Identities=25% Similarity=0.317 Sum_probs=100.0
Q ss_pred CCCCcEEEccCCccc-ccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccE
Q 038605 27 LADLEQMSLWENNLR-GEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEE 105 (485)
Q Consensus 27 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 105 (485)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....+.... .+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCCE
Confidence 467899999999887 57777888899999999999988865 6788888899999998888765444443 4888888
Q ss_pred EEccCcccccc-cchhhhcCCCCcEEEccCcccccccc---hhccCCCCCcEEEcc
Q 038605 106 LSLWGNNFNGT-IPRFIFNASKLSILELVGNSFSGFIP---NTFGNLRNLERLNLQ 157 (485)
Q Consensus 106 L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~ 157 (485)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888888742 33677788888888888888876654 467778888888765
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.1e-14 Score=122.95 Aligned_cols=135 Identities=19% Similarity=0.204 Sum_probs=95.6
Q ss_pred CcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCC
Q 038605 325 ILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSN 404 (485)
Q Consensus 325 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 404 (485)
.+.++++++.+.... .. ..+++++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-TT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-CC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466777777766433 22 235778888888887766556677778888888888887755555677788888888888
Q ss_pred CcccccCcccccCCCCCCceeCCCCcccccCCCC-CCCCCCCcccccCCCCccCCCCCC
Q 038605 405 NNLFGAIPASLEKLSYLEDLNLSFNKLEGEIPRG-GSFGNFSAESFEGNELLCGSPNLQ 462 (485)
Q Consensus 405 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~~~L~~l~l~~np~~c~~p~~~ 462 (485)
|.+.+..+..+..+++|++|++++|.+.+..+.. ..+++|+.+++++||+.|+||...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 144 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHH
Confidence 8887666666777788888888888876433333 567788888888888888776443
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.7e-14 Score=123.27 Aligned_cols=127 Identities=24% Similarity=0.323 Sum_probs=105.4
Q ss_pred CEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCc
Q 038605 279 YELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNN 358 (485)
Q Consensus 279 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 358 (485)
+.++++++.+.. .+..+ .++|+.|++++|.++.+|..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 678999998874 34433 368999999999999999888899999999999999988777778888888888888888
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCccc
Q 038605 359 FSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 359 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
+....+..|..+++|++|++++|.++...+..|..+++|+.|++++|++.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88777777888888888888888888555556777888888888888775
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=1.3e-13 Score=131.95 Aligned_cols=319 Identities=13% Similarity=0.049 Sum_probs=216.0
Q ss_pred cceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhhhcCCCCcEEEccCcccccccc
Q 038605 63 KLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIP 142 (485)
Q Consensus 63 ~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 142 (485)
.++.+...+|.++.+|+.+.+..+ ++. +....+..|.+|+.+++..+ ++......+.++.+|+.+.+..+ +.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VRE-IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccC-cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 466677788999999999999754 443 44455556899999998765 44355667778888888777544 333445
Q ss_pred hhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCccccccccccccEEEcccccCCcCcch
Q 038605 143 NTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISE 222 (485)
Q Consensus 143 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 222 (485)
.+|.....++........ ..+ ...|..|++|+.+.+..+... ....
T Consensus 134 ~aF~~~~~~~~~~~~~~~--~i~-----~~aF~~c~~L~~i~l~~~~~~---------------------------I~~~ 179 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVT--VIG-----DEAFATCESLEYVSLPDSMET---------------------------LHNG 179 (394)
T ss_dssp TTTTTCCCSEEECCTTCC--EEC-----TTTTTTCTTCCEEECCTTCCE---------------------------ECTT
T ss_pred eeeecccccccccCcccc--ccc-----hhhhcccCCCcEEecCCccce---------------------------eccc
Confidence 566665443333222221 111 134677777777776533210 1123
Q ss_pred hhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCC
Q 038605 223 EISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIAL 302 (485)
Q Consensus 223 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (485)
.+.++.+|+.+.+..+ +.......+..+..|+.+.+..+... .........+|+.+.+.+.. .......+..+..+
T Consensus 180 ~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l 255 (394)
T 4fs7_A 180 LFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDL 255 (394)
T ss_dssp TTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSC
T ss_pred cccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccc
Confidence 4667788888888765 33344556778888888888765432 12233445788888887653 33455678889999
Q ss_pred cEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 303 RILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
+.+.+..+...--...+..+..++.+......+. ...+..+.+|+.+.+..+ +......+|.++++|+.++|..+
T Consensus 256 ~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~- 330 (394)
T 4fs7_A 256 ESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL- 330 (394)
T ss_dssp CEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred eeEEcCCCcceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-
Confidence 9999987654434456777888888887765432 346778899999998765 44455678999999999999754
Q ss_pred ccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCC
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFN 429 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 429 (485)
++.....+|.++.+|+.+++..+ +......+|..+++|+.+.+..+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 66566788999999999999876 65566778999999999988654
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=3.2e-13 Score=128.76 Aligned_cols=263 Identities=14% Similarity=0.156 Sum_probs=152.9
Q ss_pred CCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCCCccEE
Q 038605 27 LADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEEL 106 (485)
Q Consensus 27 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 106 (485)
+..++.+.+.. .++......|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.+ .+.. +....+..|++|+.+
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~-I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQ-LKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCE-ECSSTTTTCTTCCEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccE-ehHHHhhCcccCCee
Confidence 35566666654 3444555566664 6777777665 555666666664 577777765 3433 333334457777777
Q ss_pred EccCcccccccchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEcc
Q 038605 107 SLWGNNFNGTIPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALS 186 (485)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 186 (485)
++..+.+.......|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ +..++. ..|.+ .+|+.+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~-----~aF~~-~~L~~i~lp 256 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ-----EAFRE-SGITTVKLP 256 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECT-----TTTTT-CCCSEEEEE
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccc-----ccccc-CCccEEEeC
Confidence 7777666633333333 567777777643 55556666777777777777653 333322 23433 455555553
Q ss_pred CCCCCCcCCccccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCC-----CCccccccCCCCCCeEeccC
Q 038605 187 NNPLDGNLRKTSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLN-----GSIPIALGKLQKLQYLGLED 261 (485)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~ 261 (485)
.+ + .......+.++++|+.+.+.++.+. ......|..+++|+.+.+.+
T Consensus 257 ~~-i--------------------------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 257 NG-V--------------------------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp TT-C--------------------------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CC-c--------------------------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 21 1 1111233555666666666655443 23344566777777777764
Q ss_pred ccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCC-CCcEEEccCCc
Q 038605 262 NKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLK-DILQLNISSNY 334 (485)
Q Consensus 262 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~-~L~~L~l~~~~ 334 (485)
.++.....+|.++++|+.+.+.++ +.......|..+ +|+.+.+.++....++. .+..++ +++.+.+..+.
T Consensus 310 -~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 310 -SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 355455566777777777777554 444555667777 77777777776666443 344443 56777776654
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=8.8e-15 Score=123.30 Aligned_cols=133 Identities=20% Similarity=0.157 Sum_probs=79.9
Q ss_pred ccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCE
Q 038605 296 FGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEY 375 (485)
Q Consensus 296 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 375 (485)
+..+++|+.|++++|.++.++......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4455666666666666666543322233666666666666543 35556666666666666666544444466666777
Q ss_pred EECCCCcccccCCc--cccCCCCCCEEeCCCCcccccCccc----ccCCCCCCceeCCCCccc
Q 038605 376 LFLGYNRLRGSIPD--SFGDLISLKFLNLSNNNLFGAIPAS----LEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 376 L~l~~~~l~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~n~~~ 432 (485)
|++++|.+. .++. .+..+++|++|++++|++. ..+.. +..+++|++|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777665 3333 5666666777777777665 33432 566677777777666654
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=5.4e-13 Score=127.14 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=97.5
Q ss_pred hhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCc
Q 038605 224 ISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALR 303 (485)
Q Consensus 224 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 303 (485)
+.++++|+.+++.++.+.......|. ..+|+.+.+..+ ++.....+|.++++|+.+++.++ +.......|.. .+|+
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred hhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 34444444444444444322222222 344444444422 33333344445555555555443 22233333443 3455
Q ss_pred EEeCCCCcCCCCC-ccccCCCCCcEEEccCCcCC-----CCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEE
Q 038605 304 ILSLGSNELTSIP-LTFWNLKDILQLNISSNYFT-----GPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLF 377 (485)
Q Consensus 304 ~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 377 (485)
.+.+. +.++.++ .+|..+++|+.+++.++.+. .....+|..|++|+.+.+.+ .+......+|.+|++|+.+.
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEE
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEE
Confidence 55552 2233332 24444555555555444332 23334555666666666663 34444445666666666666
Q ss_pred CCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCC-CCCceeCCCCcc
Q 038605 378 LGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLS-YLEDLNLSFNKL 431 (485)
Q Consensus 378 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~~ 431 (485)
|..+ ++.....+|..+ +|+.+++.+|.........+..++ .++.|++..+.+
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6443 444555566666 666666666665544444555553 566666655544
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.7e-15 Score=155.72 Aligned_cols=219 Identities=22% Similarity=0.204 Sum_probs=104.9
Q ss_pred CCCCEEEcCCCcCCCCccccccCCCCCCeE-----eccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCC
Q 038605 228 TNLTTINLGGNKLNGSIPIALGKLQKLQYL-----GLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIAL 302 (485)
Q Consensus 228 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L-----~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 302 (485)
+.++.|++.++.+... +..+.....|..+ ++..+.+. ..+..+..++.|+.|+|++|.+. .++..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 5677788887777632 2222222222222 22233333 44666777888888888888877 444555578888
Q ss_pred cEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 303 RILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
+.|+|++|.++.+|..+..+++|++|+|++|.+. ..+..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 8888888888888877788888888888888887 55667778888888888888876 556668888888888888888
Q ss_pred ccccCCccccCCC-CCCEEeCCCCcccccCcccccCCCCCCceeCCCC----cccccCCCC-----CCCCCCCcccccCC
Q 038605 383 LRGSIPDSFGDLI-SLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFN----KLEGEIPRG-----GSFGNFSAESFEGN 452 (485)
Q Consensus 383 l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n----~~~~~~p~~-----~~~~~L~~l~l~~n 452 (485)
+.+..|..+.... .+..+++++|.+.+.+|. .|+.|+++.| ...+.+|.. ..+..+....+.+|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~N 401 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYN 401 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecc
Confidence 8766666554432 122366777777765554 4556667666 222333332 33445556677777
Q ss_pred CCccCC
Q 038605 453 ELLCGS 458 (485)
Q Consensus 453 p~~c~~ 458 (485)
- +|++
T Consensus 402 i-l~~~ 406 (727)
T 4b8c_D 402 T-LCQH 406 (727)
T ss_dssp C-CCGG
T ss_pred c-cccc
Confidence 5 5543
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=2.9e-15 Score=154.06 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=106.3
Q ss_pred cchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCC
Q 038605 220 ISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNL 299 (485)
Q Consensus 220 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 299 (485)
.+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .++..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3555777888888999888887 55555667888889999988888 67778888888999999998888 557778888
Q ss_pred CCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCC-CCCeEEccCCcccccCcccccCCCCCCEEEC
Q 038605 300 IALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLK-VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFL 378 (485)
Q Consensus 300 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 378 (485)
++|+.|++++|.++.+|..+..+++|+.|+|++|++.+..+..+.... ....+++++|.+.+.+|. .|+.|++
T Consensus 293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 889999999888888888888888899999998888876655543321 112356677776655443 3455555
Q ss_pred CCC
Q 038605 379 GYN 381 (485)
Q Consensus 379 ~~~ 381 (485)
+.|
T Consensus 367 ~~n 369 (727)
T 4b8c_D 367 NTD 369 (727)
T ss_dssp ---
T ss_pred ecc
Confidence 555
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=5.9e-14 Score=118.16 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=104.4
Q ss_pred hccCCCCCcEEEccCCcccccCCcCCCCC-CCCCEEeccCccceecCCccccCCCCCCEEEccCCccccccchhhhhcCC
Q 038605 23 EFGNLADLEQMSLWENNLRGEIPLEIGNL-QNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLP 101 (485)
Q Consensus 23 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 101 (485)
.+.++.+|++|++++|.++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+....+..+ ..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD-QALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH-HHCT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh-hcCC
Confidence 4667889999999999998 4554 4444 4999999999999876 678889999999999999886544433 3589
Q ss_pred CccEEEccCcccccccch--hhhcCCCCcEEEccCcccccccch---hccCCCCCcEEEccCCcccc
Q 038605 102 NLEELSLWGNNFNGTIPR--FIFNASKLSILELVGNSFSGFIPN---TFGNLRNLERLNLQDNYLTS 163 (485)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~ 163 (485)
+|++|++++|.+. .++. .+..+++|++|++++|.+...... .+..+++|+.|+++++....
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999999886 4554 677888899999988888744222 37778888888888776543
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=5.3e-12 Score=120.81 Aligned_cols=132 Identities=14% Similarity=0.137 Sum_probs=74.0
Q ss_pred CcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCCcEEEccCCcCCCCCCccccCCC
Q 038605 269 PDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDILQLNISSNYFTGPLPLEIGNLK 347 (485)
Q Consensus 269 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 347 (485)
..+|.++..|+.+.+.+.... .....|..+++|+.+.+. +.++.++. .|..+.+|+.+.+..+ ++.....+|..|.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345566666666666554322 344556666677777664 33444433 4556677777777553 4434455677777
Q ss_pred CCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcc
Q 038605 348 VLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNL 407 (485)
Q Consensus 348 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~ 407 (485)
+|+.+.+..+ +......+|.+|++|+.+++.++.... .++..+.+|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7777777544 444445677888888888887765431 3456667777777765543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=9.6e-14 Score=115.93 Aligned_cols=109 Identities=24% Similarity=0.303 Sum_probs=67.5
Q ss_pred CeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCC
Q 038605 350 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFN 429 (485)
Q Consensus 350 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 429 (485)
++++++++.+.. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455566655553 33322 256666666666666555666666667777777777666555555566677777777777
Q ss_pred cccccCCC-CCCCCCCCcccccCCCCccCCCCC
Q 038605 430 KLEGEIPR-GGSFGNFSAESFEGNELLCGSPNL 461 (485)
Q Consensus 430 ~~~~~~p~-~~~~~~L~~l~l~~np~~c~~p~~ 461 (485)
++.+..+. ...+++|+.|++++|||.|+|+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 76644443 356677777777777777777543
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=1.5e-11 Score=117.63 Aligned_cols=335 Identities=14% Similarity=0.136 Sum_probs=169.8
Q ss_pred cccCCcCCCCCC-CCCEEeccCccceecCCccccCCCCCCEEEccCCc---cccccchhhhhcCCCccEEEccCcccccc
Q 038605 41 RGEIPLEIGNLQ-NLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS---LLGCLSSIADVRLPNLEELSLWGNNFNGT 116 (485)
Q Consensus 41 ~~~~~~~~~~l~-~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 116 (485)
+.+...+|.++. .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+. +.. +....+..+.+|+.+.+..+ ++..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~-Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKK-IGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCE-ECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeE-echhhchhcccceeeccCCc-ccee
Confidence 334445566653 4677777653 555666667777777777665542 222 22333334555555555433 2223
Q ss_pred cchhhhcCCCCcEEEccCcccccccchhccCCCCCcEEEccCCccccCCCCccccccccCCCCCCEEEccCCCCCCcCCc
Q 038605 117 IPRFIFNASKLSILELVGNSFSGFIPNTFGNLRNLERLNLQDNYLTSSTPELSFLSSLSNCKSLTLIALSNNPLDGNLRK 196 (485)
Q Consensus 117 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 196 (485)
....+..+.+|+.+.+... +......+|..+..|+.+.+..+ +...+. ..|. ...|+.+.+....
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~-----~aF~-~~~l~~i~ip~~~------- 193 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEE-----RAFT-GTALTQIHIPAKV------- 193 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTTT-TCCCSEEEECTTC-------
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecc-----cccc-ccceeEEEECCcc-------
Confidence 3344455555555555432 22233344555555555555432 111111 0121 1233333332111
Q ss_pred cccccccccccEEEcccccCCcCcchhhhcCCCCCEEEcCCCcCCCCccccccCCCCCCeEeccCccCCCCCCcccCCCC
Q 038605 197 TSVGNLSHSLEIFLMYNCNISGGISEEISNLTNLTTINLGGNKLNGSIPIALGKLQKLQYLGLEDNKLEGSIPDDICRLD 276 (485)
Q Consensus 197 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 276 (485)
.......+..+.+++.+..............+......... ...+....
T Consensus 194 --------------------~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 242 (394)
T 4gt6_A 194 --------------------TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYA-----------LIRYPSQR 242 (394)
T ss_dssp --------------------CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEE-----------EEECCTTC
T ss_pred --------------------cccccchhhhccccceecccccccccccceeeccccccccc-----------cccccccc
Confidence 01112234445555555544433221110001000000000 00111223
Q ss_pred CCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccC
Q 038605 277 ELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSM 356 (485)
Q Consensus 277 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 356 (485)
.+..+.+.+. +.......|..|.+|+.+.+.+....--...+..+++|+.+.+.. .+......+|..|.+|+.+++..
T Consensus 243 ~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 243 EDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT
T ss_pred ccceEEcCCc-ceEcccceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC
Confidence 3444444332 222445678888999999987654433344667788899888864 34445556788888888888876
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCCcc
Q 038605 357 NNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFNKL 431 (485)
Q Consensus 357 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 431 (485)
+ +......+|.+|++|+++.|..+ ++.....+|.+|.+|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 4 44445567888888888888654 554556778888888888888875431 3566677888887766554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.7e-13 Score=113.58 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=68.0
Q ss_pred CeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccccCcccccCCCCCCceeCCCC
Q 038605 350 IGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFGAIPASLEKLSYLEDLNLSFN 429 (485)
Q Consensus 350 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 429 (485)
+.++++++.+.. +|..+. ++|++|++++|.+.+..+..|..+++|++|+|++|++.+..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455666665542 333232 56667777777666555666666777777777777766544444566777777777777
Q ss_pred cccccCCC-CCCCCCCCcccccCCCCccCCCCC
Q 038605 430 KLEGEIPR-GGSFGNFSAESFEGNELLCGSPNL 461 (485)
Q Consensus 430 ~~~~~~p~-~~~~~~L~~l~l~~np~~c~~p~~ 461 (485)
++.+..+. ...+++|+.|++++|||.|.|+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 77643333 356677777777777777777543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=1.8e-15 Score=130.23 Aligned_cols=63 Identities=29% Similarity=0.300 Sum_probs=25.9
Q ss_pred cCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCC
Q 038605 272 ICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFT 336 (485)
Q Consensus 272 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~ 336 (485)
+..+++|++|++++|.+.+ .+ .+..+++|+.|++++|.++.+|..+..+++|++|++++|++.
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC
Confidence 3334444444444444332 11 333444444444444444444433333344444444444443
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.38 E-value=1.3e-15 Score=131.05 Aligned_cols=111 Identities=22% Similarity=0.292 Sum_probs=59.6
Q ss_pred cccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCC
Q 038605 295 CFGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLE 374 (485)
Q Consensus 295 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 374 (485)
.+..+++|+.|++++|.++.+| .+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.+. + .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCC
Confidence 5556666666666666666665 5555666666666666655 2333344445555555555555532 2 344455555
Q ss_pred EEECCCCcccccCC-ccccCCCCCCEEeCCCCcccc
Q 038605 375 YLFLGYNRLRGSIP-DSFGDLISLKFLNLSNNNLFG 409 (485)
Q Consensus 375 ~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~~~~ 409 (485)
+|++++|++.+..+ ..+..+++|++|++++|++.+
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 55555555542111 234455555555555555543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=4.2e-12 Score=105.89 Aligned_cols=106 Identities=23% Similarity=0.212 Sum_probs=70.4
Q ss_pred CCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCC
Q 038605 301 ALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGY 380 (485)
Q Consensus 301 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 380 (485)
+.+.++++++.++.+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3467777777777777654 26677777777777766566666666777777777766655555566666777777777
Q ss_pred CcccccCCccccCCCCCCEEeCCCCccc
Q 038605 381 NRLRGSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 381 ~~l~~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
|+++...+..|..+++|++|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7666544455666666666666666665
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=9.3e-12 Score=104.15 Aligned_cols=104 Identities=24% Similarity=0.242 Sum_probs=69.0
Q ss_pred cEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 303 RILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 303 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
+.++++++.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776542 667777777777776656666666677777777776665544555666677777777776
Q ss_pred ccccCCccccCCCCCCEEeCCCCccc
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
+....+..|..+++|++|++++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66444444666666777777766665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=1e-13 Score=130.90 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=76.5
Q ss_pred CCCCeEeccCccCCCCCCccc----C-CCCCCCEEEccCCcCcccccccc-cCCCCCcEEeCCCCcCCCCC-----ccc-
Q 038605 252 QKLQYLGLEDNKLEGSIPDDI----C-RLDELYELELGGNKLSGSIPACF-GNLIALRILSLGSNELTSIP-----LTF- 319 (485)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~-----~~~- 319 (485)
+.|++|++++|.++......+ . ..++|+.|++++|.+.......+ ..+++|+.|++++|.+++.. ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456677777776654322222 2 22466677777666643322222 23445666666666665411 111
Q ss_pred cCCCCCcEEEccCCcCCCCCC----ccccCCCCCCeEEccCCcccccC----cccccCCCCCCEEECCCCcccccC----
Q 038605 320 WNLKDILQLNISSNYFTGPLP----LEIGNLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLRGSI---- 387 (485)
Q Consensus 320 ~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~~---- 387 (485)
...++|++|++++|.+++... ..+..+++|++|++++|.+.+.. ...+...++|++|++++|.+++..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234556666666665543211 12234555555555555554321 233444455555555555554321
Q ss_pred CccccCCCCCCEEeCCCCccccc
Q 038605 388 PDSFGDLISLKFLNLSNNNLFGA 410 (485)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~~~~~ 410 (485)
...+...++|++|+|++|.+.+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHH
Confidence 12223345555555555555433
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=1.6e-09 Score=103.07 Aligned_cols=146 Identities=10% Similarity=0.081 Sum_probs=82.0
Q ss_pred cccCCCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCCc-cccCCCCC
Q 038605 247 ALGKLQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIPL-TFWNLKDI 325 (485)
Q Consensus 247 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L 325 (485)
.+....+++.+.+..+ +.......+.++..|+.+.+..+ +.......|..+.+|+.+.+..+ +..++. .+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3444455555555443 22233345556666666666554 33344455666666666666433 333332 45566667
Q ss_pred cEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCC
Q 038605 326 LQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISL 397 (485)
Q Consensus 326 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L 397 (485)
+.+.+.++.+......+|..|.+|+.+.+..+ +......+|.+|++|+++.+..+ ++.....+|.+++.+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 77776666665555556667777777777543 33344456777777777777543 444455566665433
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1.1e-12 Score=123.91 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCCEEeccCccceecCCccccC-----CCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccchhh-----
Q 038605 52 QNLEELDLRQNKLVGIVPAAIFN-----VSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIPRFI----- 121 (485)
Q Consensus 52 ~~L~~L~L~~~~i~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----- 121 (485)
+.|+.|++++|.++......+.. .++|++|+|++|.+...........+++|++|++++|.+.+.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 44555555555554332222221 24555555555555433333332234455555555555543222222
Q ss_pred hcCCCCcEEEccCcccccc----cchhccCCCCCcEEEccCCccc
Q 038605 122 FNASKLSILELVGNSFSGF----IPNTFGNLRNLERLNLQDNYLT 162 (485)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~ 162 (485)
...++|++|++++|.++.. ++..+...++|++|++++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 1234555555555554432 2222344455555555555544
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=4.6e-11 Score=112.32 Aligned_cols=104 Identities=26% Similarity=0.228 Sum_probs=71.3
Q ss_pred EEEccCC-cCCCCCCccccCCCCCCeEEccC-CcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCC
Q 038605 327 QLNISSN-YFTGPLPLEIGNLKVLIGIDFSM-NNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSN 404 (485)
Q Consensus 327 ~L~l~~~-~l~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 404 (485)
.++++++ .+.. .+. +..+.+|++|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..+..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6663 444 66777777777775 777766666777777777777777777766666777777777777777
Q ss_pred CcccccCcccccCCCCCCceeCCCCcccc
Q 038605 405 NNLFGAIPASLEKLSYLEDLNLSFNKLEG 433 (485)
Q Consensus 405 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 433 (485)
|++....+..+..++ |++|++.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777754444444444 7777777777653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.20 E-value=4.6e-09 Score=99.87 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=105.0
Q ss_pred CCCCCeEeccCccCCCCCCcccCCCCCCCEEEccCCcCcccccccccCCCCCcEEeCCCCcCCCCC-ccccCCCCCcEEE
Q 038605 251 LQKLQYLGLEDNKLEGSIPDDICRLDELYELELGGNKLSGSIPACFGNLIALRILSLGSNELTSIP-LTFWNLKDILQLN 329 (485)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~ 329 (485)
...+..+.+..... ......+....+++.+.+..+ +.......+..+..|+.+.+..+ ++.+. ..+..+.+|+.+.
T Consensus 193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 33444444443221 133345566677787777654 33344556777888888888665 44443 3566677888888
Q ss_pred ccCCcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 038605 330 ISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSNNNLFG 409 (485)
Q Consensus 330 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~ 409 (485)
+..+ +......+|..|.+|+.+.+.++.+......+|.+|++|+.+.|..+ ++.....+|.++.+|+.+.+..+ +..
T Consensus 270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~ 346 (379)
T 4h09_A 270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL 346 (379)
T ss_dssp ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence 7654 44345556778888888888877776666677888888888888654 55455677888888888888654 443
Q ss_pred cCcccccCCC
Q 038605 410 AIPASLEKLS 419 (485)
Q Consensus 410 ~~~~~l~~l~ 419 (485)
....+|..+.
T Consensus 347 I~~~aF~~c~ 356 (379)
T 4h09_A 347 IESGAFEGSS 356 (379)
T ss_dssp ECTTTTTTSS
T ss_pred EchhHhhCCC
Confidence 4445565554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=1.1e-10 Score=109.85 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=56.1
Q ss_pred EeCCCC-cCCCCCccccCCCCCcEEEccC-CcCCCCCCccccCCCCCCeEEccCCcccccCcccccCCCCCCEEECCCCc
Q 038605 305 LSLGSN-ELTSIPLTFWNLKDILQLNISS-NYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIGGLKNLEYLFLGYNR 382 (485)
Q Consensus 305 L~l~~~-~l~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 382 (485)
++.+++ .++.+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|.+.+..+..|.++++|++|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 444554 5555555 55555555555554 55555444555555666666666666555555555556666666666666
Q ss_pred ccccCCccccCCCCCCEEeCCCCccc
Q 038605 383 LRGSIPDSFGDLISLKFLNLSNNNLF 408 (485)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~l~~~~~~ 408 (485)
+....+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 5533333344333 666666666554
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=2.7e-10 Score=106.53 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=44.0
Q ss_pred CCCCCeEEccCCcccccCcccc---cCCCCCCEEECCCCccccc----CCccccCCCCCCEEeCCCCcccccCcccccCC
Q 038605 346 LKVLIGIDFSMNNFSGVIPTEI---GGLKNLEYLFLGYNRLRGS----IPDSFGDLISLKFLNLSNNNLFGAIPASLEKL 418 (485)
Q Consensus 346 ~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l 418 (485)
+++|++|++.+|.+.+.....+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+.+.....+...
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4555666665555543221111 1356677777777766542 22233445677777777777665444444321
Q ss_pred CCCCceeCCCCc
Q 038605 419 SYLEDLNLSFNK 430 (485)
Q Consensus 419 ~~L~~L~l~~n~ 430 (485)
- ...+++++++
T Consensus 331 l-g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L-PMKIDVSDSQ 341 (362)
T ss_dssp C-CSEEECCSBC
T ss_pred c-CCEEEecCCc
Confidence 1 3446666655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=5e-10 Score=104.68 Aligned_cols=135 Identities=17% Similarity=0.183 Sum_probs=85.5
Q ss_pred ccCCCCCcEEeCCCCcCCCCCccccCCCCCcEEEccCCcCCCCCCcccc--CCCCCCeEEccC--Cccccc-----Cccc
Q 038605 296 FGNLIALRILSLGSNELTSIPLTFWNLKDILQLNISSNYFTGPLPLEIG--NLKVLIGIDFSM--NNFSGV-----IPTE 366 (485)
Q Consensus 296 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~--~~~~~~-----~~~~ 366 (485)
+..+|+|+.|.++++.-..++. + ..++|+.|++..+.+.......+. .+++|+.|+|+. +...+. +...
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 4556667777766653222332 2 256777777777766543333332 567777777743 111111 1112
Q ss_pred c--cCCCCCCEEECCCCcccccCCccc---cCCCCCCEEeCCCCccccc----CcccccCCCCCCceeCCCCccc
Q 038605 367 I--GGLKNLEYLFLGYNRLRGSIPDSF---GDLISLKFLNLSNNNLFGA----IPASLEKLSYLEDLNLSFNKLE 432 (485)
Q Consensus 367 ~--~~l~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 432 (485)
+ ..+++|+.|++++|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 357999999999998874332222 2578999999999998764 3444456799999999999876
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.54 E-value=1.8e-08 Score=84.87 Aligned_cols=117 Identities=17% Similarity=0.158 Sum_probs=54.1
Q ss_pred cccCCCCCcEEeCCCC-cCCC-----CCccccCCCCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCcccccCccccc
Q 038605 295 CFGNLIALRILSLGSN-ELTS-----IPLTFWNLKDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNNFSGVIPTEIG 368 (485)
Q Consensus 295 ~~~~~~~L~~L~l~~~-~l~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 368 (485)
.+...++|++|++++| .+.. +...+...++|++|++++|.+.+..... +...+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~--------------------l~~~L~ 90 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA--------------------LAEMLK 90 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH--------------------HHHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH--------------------HHHHHH
Confidence 3445566666666666 5544 2223344455555555555554321111 112233
Q ss_pred CCCCCCEEECCCCccccc----CCccccCCCCCCEEeC--CCCccccc----CcccccCCCCCCceeCCCCcc
Q 038605 369 GLKNLEYLFLGYNRLRGS----IPDSFGDLISLKFLNL--SNNNLFGA----IPASLEKLSYLEDLNLSFNKL 431 (485)
Q Consensus 369 ~l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~ 431 (485)
..++|++|++++|.+.+. +...+...++|++|++ ++|.+.+. +...+...++|++|++++|.+
T Consensus 91 ~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 91 VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 334455555555554431 2233344455555555 44555432 223333445555555555554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.49 E-value=1.9e-08 Score=82.38 Aligned_cols=84 Identities=12% Similarity=0.035 Sum_probs=47.1
Q ss_pred CCCcEEEccCCcCCCCCCccccCCCCCCeEEccCCc-ccccCcccccCC----CCCCEEECCCCc-ccccCCccccCCCC
Q 038605 323 KDILQLNISSNYFTGPLPLEIGNLKVLIGIDFSMNN-FSGVIPTEIGGL----KNLEYLFLGYNR-LRGSIPDSFGDLIS 396 (485)
Q Consensus 323 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-l~~~~~~~~~~~~~ 396 (485)
..|++|++++|.+++.....+..+++|++|+|++|. +++.....+..+ ++|++|++++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 456667776666665555555566666666666664 444433334432 356666666653 55444444555566
Q ss_pred CCEEeCCCCc
Q 038605 397 LKFLNLSNNN 406 (485)
Q Consensus 397 L~~L~l~~~~ 406 (485)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666653
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=6.8e-08 Score=81.35 Aligned_cols=16 Identities=6% Similarity=0.000 Sum_probs=7.2
Q ss_pred CCCCCCEEEccCCccc
Q 038605 74 NVSTLKLLQLQNNSLL 89 (485)
Q Consensus 74 ~l~~L~~L~L~~~~~~ 89 (485)
..++|++|+|++|.+.
T Consensus 63 ~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TCCSCCEEECTTSCCC
T ss_pred hCCCcCEEECcCCCCC
Confidence 3444444444444443
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1e-07 Score=78.11 Aligned_cols=85 Identities=8% Similarity=0.002 Sum_probs=46.2
Q ss_pred CCCCCEEeccCccceecCCccccCCCCCCEEEccCCc-cccccchhhhh---cCCCccEEEccCcc-cccccchhhhcCC
Q 038605 51 LQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNNS-LLGCLSSIADV---RLPNLEELSLWGNN-FNGTIPRFIFNAS 125 (485)
Q Consensus 51 l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~~-~~~~~~~~~~~---~l~~L~~L~l~~~~-~~~~~~~~l~~l~ 125 (485)
-..|+.|++++|.+++.....+.++++|++|+|++|. +++........ .+++|++|++++|. +++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3456666666666655544455566666666666664 44332222221 02356666666653 5544444455566
Q ss_pred CCcEEEccCc
Q 038605 126 KLSILELVGN 135 (485)
Q Consensus 126 ~L~~L~l~~~ 135 (485)
+|++|++++|
T Consensus 140 ~L~~L~L~~c 149 (176)
T 3e4g_A 140 NLKYLFLSDL 149 (176)
T ss_dssp TCCEEEEESC
T ss_pred CCCEEECCCC
Confidence 6666666665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.09 E-value=2e-06 Score=76.06 Aligned_cols=83 Identities=29% Similarity=0.280 Sum_probs=58.0
Q ss_pred CCCCCCCEEeccCccceec--CCccccCCCCCCEEEccCCccccccchhhhhcCCCccEEEccCcccccccc-------h
Q 038605 49 GNLQNLEELDLRQNKLVGI--VPAAIFNVSTLKLLQLQNNSLLGCLSSIADVRLPNLEELSLWGNNFNGTIP-------R 119 (485)
Q Consensus 49 ~~l~~L~~L~L~~~~i~~~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~ 119 (485)
.++++|+.|+|++|.+++. ++..+..+++|+.|+|++|.+.+.........+ +|++|++.+|++.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4578888888888888763 345566788888888888888764222222223 88888888888875443 3
Q ss_pred hhhcCCCCcEEEc
Q 038605 120 FIFNASKLSILEL 132 (485)
Q Consensus 120 ~l~~l~~L~~L~l 132 (485)
.+..+++|+.|+-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 4567888888864
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=5.4e-06 Score=73.28 Aligned_cols=108 Identities=27% Similarity=0.248 Sum_probs=74.0
Q ss_pred CCCCCCCCE--EeccCccce---ecCCccccCCCCCCEEEccCCccccccc-hhhhhcCCCccEEEccCcccccccchhh
Q 038605 48 IGNLQNLEE--LDLRQNKLV---GIVPAAIFNVSTLKLLQLQNNSLLGCLS-SIADVRLPNLEELSLWGNNFNGTIPRFI 121 (485)
Q Consensus 48 ~~~l~~L~~--L~L~~~~i~---~~~~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l 121 (485)
|...+.|+. ++++.|... ........++++|++|+|++|.+.+... ......+++|+.|++++|.+.+. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 444555665 666666432 1122223578999999999999986432 12223599999999999999754 234
Q ss_pred hcCC--CCcEEEccCcccccccc-------hhccCCCCCcEEEcc
Q 038605 122 FNAS--KLSILELVGNSFSGFIP-------NTFGNLRNLERLNLQ 157 (485)
Q Consensus 122 ~~l~--~L~~L~l~~~~~~~~~~-------~~~~~l~~L~~L~l~ 157 (485)
..+. +|++|++++|.+.+..+ ..+..+++|+.|+-.
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 4444 99999999999875433 346788999988743
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.79 E-value=1.8e-05 Score=61.87 Aligned_cols=58 Identities=17% Similarity=0.366 Sum_probs=33.6
Q ss_pred EEeCCCCccc-ccCcccccCCCCCCceeCCCCcccccCCCC--CCCCCCCcccccCCCCccCCC
Q 038605 399 FLNLSNNNLF-GAIPASLEKLSYLEDLNLSFNKLEGEIPRG--GSFGNFSAESFEGNELLCGSP 459 (485)
Q Consensus 399 ~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--~~~~~L~~l~l~~np~~c~~p 459 (485)
.++.+++.++ ..+|..+. ++|++|+|++|+++ .+|.. ..+++|+.|++.+|||.|+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeeccCc
Confidence 4444544443 13333221 34666666666665 33332 456677778888999999983
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.47 E-value=3.1e-05 Score=64.66 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=19.8
Q ss_pred cCCCCCcEEeCCCC-cCCC-----CCccccCCCCCcEEEccCCcCC
Q 038605 297 GNLIALRILSLGSN-ELTS-----IPLTFWNLKDILQLNISSNYFT 336 (485)
Q Consensus 297 ~~~~~L~~L~l~~~-~l~~-----~~~~~~~~~~L~~L~l~~~~l~ 336 (485)
..-+.|++|+++++ .+.+ +...+.....|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 33455666666553 4443 2233344455555555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=5.3e-05 Score=63.24 Aligned_cols=86 Identities=19% Similarity=0.064 Sum_probs=37.6
Q ss_pred CCCCCCeEEccCCcccccC----cccccCCCCCCEEECCCCccccc----CCccccCCCCCCEEeCCCC---cccc----
Q 038605 345 NLKVLIGIDFSMNNFSGVI----PTEIGGLKNLEYLFLGYNRLRGS----IPDSFGDLISLKFLNLSNN---NLFG---- 409 (485)
Q Consensus 345 ~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~---~~~~---- 409 (485)
.-..|++|+|++|.+.+.. ..++..-++|++|+|++|.|.+. +.+++..-.+|++|+|++| .+.+
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 3345555555555554321 12233344555555555555431 1223333444555555433 2221
Q ss_pred cCcccccCCCCCCceeCCCCc
Q 038605 410 AIPASLEKLSYLEDLNLSFNK 430 (485)
Q Consensus 410 ~~~~~l~~l~~L~~L~l~~n~ 430 (485)
.+.+.+..-++|++|+++.|.
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhCCCcCeEeccCCC
Confidence 122334444555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.00086 Score=52.15 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=29.7
Q ss_pred cccccccccc--CCChhccCCCCCcEEEccCCcccccCCcCCCCCCCCCEEeccCcc
Q 038605 9 SDNFLTFQLG--EIPREFGNLADLEQMSLWENNLRGEIPLEIGNLQNLEELDLRQNK 63 (485)
Q Consensus 9 ~~~~~~~~~~--~lp~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 63 (485)
.++|.++.++ ++|..+. ++|++|+|++|.|+...+..|..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4666666666 6665552 356666666666654444445555555555555553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.95 E-value=1.7 Score=31.38 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=31.3
Q ss_pred CcccccCCcCCCCCCCCCEEeccCccceecCCccccCCCCCCEEEccCC
Q 038605 38 NNLRGEIPLEIGNLQNLEELDLRQNKLVGIVPAAIFNVSTLKLLQLQNN 86 (485)
Q Consensus 38 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~~~~l~~l~~L~~L~L~~~ 86 (485)
..++.+-...|.++.+|+.+.|..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445455556777777777777664 55555667777777777777653
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.27 E-value=6.5 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.108 Sum_probs=17.0
Q ss_pred ccccCCCCCCEEECCCCcccccCCccccCCCCCCEEeCCC
Q 038605 365 TEIGGLKNLEYLFLGYNRLRGSIPDSFGDLISLKFLNLSN 404 (485)
Q Consensus 365 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 404 (485)
.+|.+|++|+.+.|..+ ++.....+|..|.+|+.+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444444444444432 2223334444444444444443
Done!