BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038606
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 111 YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE 170
+ +G++ +A+ + ++ D D V L +A+ K G VD+ EL+ER + N
Sbjct: 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER-SLADAPDNV 76
Query: 171 KTFCVLIHGFVKKSRVDKALQLFDKMTKS 199
K VL +V+ + D A+ L K+ ++
Sbjct: 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEA 105
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 111 YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE 170
+ +G++ +A+ + ++ D D V L +A+ K G VD+ EL+ER + N
Sbjct: 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER-SLADAPDNV 76
Query: 171 KTFCVLIHGFVKKSRVDKALQLFDKMTKS 199
K VL +V+ + D A+ L K+ ++
Sbjct: 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEA 105
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 111 YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE 170
+ +G++ +A+ + ++ D D V L +A+ K G VD+ EL+ER + N
Sbjct: 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER-SLADAPDNV 76
Query: 171 KTFCVLIHGFVKKSRVDKALQLFDKMTKS 199
K VL +V+ + D A+ L K+ ++
Sbjct: 77 KVATVLGLTYVQVQKYDLAVPLLIKVAEA 105
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 111 YCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE 170
+ +G++ +A+ + ++ D D V L +A+ K G VD+ EL+ER + N
Sbjct: 18 HAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLER-SIADAPDNI 76
Query: 171 KTFCVLIHGFVKKSRVDKALQLFDKMTKS 199
K VL +V+ + D A+ L K+ ++
Sbjct: 77 KVATVLGLTYVQVQKYDLAVPLLVKVAEA 105
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 480 VDLALELFRD-ICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVA-TY 537
+DLA++ +R I PD AY + + L + VAEAED +N + L P+ A +
Sbjct: 253 IDLAIDTYRRAIELQPHFPD--AYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSL 308
Query: 538 NLLINGWCKSGNIDQAMLCLSRMLEKESGSPD-VITYTTLIDGLCIAGRPDDAIMLWNE 595
N L N + GNI++A+ + LE P+ ++ L L G+ +A+M + E
Sbjct: 309 NNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 10 RIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSY 69
R+ P R + DVV S FM G S GL + D+ + G+C S
Sbjct: 284 RLLPERYPSADVV-SVSFMQLG-------MASSAGLFLKELCSNDEFLQGGIC-----SN 330
Query: 70 NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEI 127
CL + +SCS VE+R K L P L YC+ + + V NE+
Sbjct: 331 PCLFKGFQQSCSAGEVEVRPDGSASVNEDVRKNRLKP-LATYCSVNNPEISFKVTNEM 387
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 10 RIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSY 69
R+ P R + DVV S FM G S GL + D+ + G+C S
Sbjct: 284 RLLPERYPSADVV-SVSFMQLG-------MASSAGLFLKELCSNDEFLQGGIC-----SN 330
Query: 70 NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEI 127
CL + +SCS VE+R K L P L YC+ + + V NE+
Sbjct: 331 PCLFKGFQQSCSAGEVEVRPDGSASVNEDVRKNRLKP-LATYCSVNNPEISFKVTNEM 387
>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like
Protein From The Protozoan Parasite Plasmodium
Falciparum
Length = 108
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 552 QAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK 599
Q +C+ +++E + S T+ L+D C G DA+++ N E+K
Sbjct: 20 QGHMCIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDK 67
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 10 RIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSY 69
R+ P R + DVV S FM G S GL + D+ + G+C S
Sbjct: 284 RLLPERYPSADVV-SVSFMQLG-------MASSAGLFLKELCSNDEFLQGGIC-----SN 330
Query: 70 NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEI 127
CL + +SCS VE+R K L P L YC+ + + V NE+
Sbjct: 331 PCLFKGFQQSCSAGEVEVRPDGSASVNEDVRKNRLKP-LATYCSVHNPEISFKVTNEM 387
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 200 GFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLL 259
G+ S A Y++ + NK + L+ + + + D+EI+S L+ E E++ +
Sbjct: 115 GYISIAHHYNIEVPTF--NKTITSDLKHLYDKRTTFFGIDYEIVSNLLNVLPYE-EVSSI 171
Query: 260 VKEIW-------EDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVE- 311
+K ++ +D D+ T+L N+ + I + N ++ +A + + I ++ +
Sbjct: 172 IKPMYPIVDSFGKDYDLTIQTVLKNA-LTISIMNRNLKEAQYYINQFEHLKTIKNISING 230
Query: 312 --------MLMIFKGTVSPNTSSF---DIIINTLLKDGKLDLALSLFREMTQIGCMQ 357
+ I++ N S+ IIN GK D+ SL E+T+I +
Sbjct: 231 CYDLEINYLKQIYQFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKE 287
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 78/177 (44%), Gaps = 23/177 (12%)
Query: 200 GFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLL 259
G+ S A Y++ + NK + L+ + + + D+EI+S L+ E E++ +
Sbjct: 115 GYISIAHHYNIEVPTF--NKTITSDLKHLYDKRTTFFGIDYEIVSNLLNVLPYE-EVSSI 171
Query: 260 VKEIW-------EDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVE- 311
+K ++ +D D+ T+L N+ + I + N ++ +A + + I ++ +
Sbjct: 172 IKPMYPIVDSFGKDYDLTIQTVLKNA-LTISIMNRNLKEAQYYINQFEHLKTIKNISING 230
Query: 312 --------MLMIFKGTVSPNTSSF---DIIINTLLKDGKLDLALSLFREMTQIGCMQ 357
+ I++ N S+ IIN GK D+ SL E+T+I +
Sbjct: 231 YYDLEINYLKQIYQFLTDKNIDSYLNAVNIINIFKIIGKEDIHRSLVEELTKISAKE 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,147,082
Number of Sequences: 62578
Number of extensions: 722205
Number of successful extensions: 1962
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1948
Number of HSP's gapped (non-prelim): 19
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)