Query 038606
Match_columns 666
No_of_seqs 658 out of 3336
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 12:44:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.2E-74 4.9E-79 616.8 65.7 628 3-666 59-717 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.9E-74 1.1E-78 614.2 66.7 596 3-642 129-728 (857)
3 PLN03218 maturation of RBCL 1; 100.0 2.5E-66 5.5E-71 541.4 65.4 526 63-641 367-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 4.3E-66 9.3E-71 539.6 66.7 526 25-606 365-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.7E-59 3.6E-64 490.1 52.4 512 64-641 85-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.4E-59 9.5E-64 486.9 52.3 473 98-637 84-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-41 3.9E-46 375.0 77.4 624 7-666 273-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-40 2.4E-45 368.7 77.6 627 4-664 134-827 (899)
9 PRK11447 cellulose synthase su 100.0 2.9E-32 6.3E-37 299.2 71.9 629 2-665 35-736 (1157)
10 PRK11447 cellulose synthase su 100.0 1.4E-29 3E-34 278.2 68.6 615 30-665 28-696 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.8E-27 4E-32 248.6 67.8 624 4-664 53-735 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-26 4.3E-31 240.9 68.4 594 34-665 48-702 (987)
13 KOG2002 TPR-containing nuclear 100.0 2E-25 4.4E-30 217.4 55.9 557 46-663 146-739 (1018)
14 KOG2002 TPR-containing nuclear 100.0 6.9E-25 1.5E-29 213.7 52.6 570 5-635 140-746 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 4.8E-25 1E-29 203.9 36.8 445 33-542 51-498 (966)
16 KOG4626 O-linked N-acetylgluco 100.0 7E-24 1.5E-28 196.3 41.3 446 68-580 50-500 (966)
17 KOG2076 RNA polymerase III tra 99.9 4E-19 8.6E-24 172.9 57.6 638 4-665 148-891 (895)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-20 2.5E-25 195.2 49.6 234 326-564 333-572 (615)
19 PRK15174 Vi polysaccharide exp 99.9 2.6E-21 5.5E-26 198.9 42.1 368 30-456 42-418 (656)
20 TIGR00990 3a0801s09 mitochondr 99.9 5E-20 1.1E-24 190.6 50.8 258 336-599 306-571 (615)
21 PRK11788 tetratricopeptide rep 99.9 3.7E-22 8.1E-27 196.4 33.6 311 29-395 34-354 (389)
22 PRK15174 Vi polysaccharide exp 99.9 8.8E-21 1.9E-25 194.9 44.4 395 40-491 15-418 (656)
23 PRK10049 pgaA outer membrane p 99.9 1.4E-20 3.1E-25 197.8 45.4 164 27-195 12-175 (765)
24 PRK10049 pgaA outer membrane p 99.9 5.1E-20 1.1E-24 193.7 47.8 157 2-163 22-178 (765)
25 PRK14574 hmsH outer membrane p 99.9 5.5E-19 1.2E-23 181.6 52.8 461 26-528 30-513 (822)
26 KOG2076 RNA polymerase III tra 99.9 4.4E-18 9.4E-23 165.8 55.3 615 28-665 135-845 (895)
27 PRK11788 tetratricopeptide rep 99.9 6E-21 1.3E-25 187.9 35.6 307 108-465 42-354 (389)
28 KOG0495 HAT repeat protein [RN 99.9 1.1E-16 2.5E-21 149.9 61.0 601 11-665 267-876 (913)
29 KOG0495 HAT repeat protein [RN 99.9 1.3E-16 2.8E-21 149.6 56.7 524 45-646 361-891 (913)
30 PRK14574 hmsH outer membrane p 99.9 5.6E-18 1.2E-22 174.3 50.9 448 63-568 31-518 (822)
31 KOG1915 Cell cycle control pro 99.8 1.3E-14 2.8E-19 131.2 50.7 499 13-580 22-550 (677)
32 KOG2003 TPR repeat-containing 99.8 1.2E-16 2.6E-21 143.3 36.7 479 68-620 203-709 (840)
33 KOG2003 TPR repeat-containing 99.8 1E-15 2.2E-20 137.4 40.3 494 102-655 202-709 (840)
34 KOG1915 Cell cycle control pro 99.8 3.4E-14 7.4E-19 128.5 49.1 454 28-543 71-549 (677)
35 KOG4422 Uncharacterized conser 99.8 1.4E-13 3.1E-18 123.0 40.6 454 68-557 118-619 (625)
36 KOG4422 Uncharacterized conser 99.8 1.9E-13 4.1E-18 122.2 40.6 242 202-496 204-465 (625)
37 PRK10747 putative protoheme IX 99.8 9.9E-15 2.2E-19 141.6 35.1 285 43-387 97-389 (398)
38 KOG2047 mRNA splicing factor [ 99.7 1.4E-11 3.1E-16 116.2 53.1 565 29-620 101-709 (835)
39 TIGR00540 hemY_coli hemY prote 99.7 7.7E-15 1.7E-19 143.3 33.5 297 38-386 92-397 (409)
40 KOG1126 DNA-binding cell divis 99.7 1.3E-15 2.9E-20 144.1 24.5 286 45-389 334-621 (638)
41 KOG3785 Uncharacterized conser 99.7 5.8E-13 1.3E-17 116.2 38.6 452 77-609 33-498 (557)
42 KOG1155 Anaphase-promoting com 99.7 3.9E-13 8.4E-18 121.6 35.9 305 25-385 159-492 (559)
43 KOG1155 Anaphase-promoting com 99.7 2.4E-12 5.2E-17 116.6 40.3 389 33-457 81-494 (559)
44 PF13429 TPR_15: Tetratricopep 99.7 1.1E-16 2.5E-21 148.4 11.7 195 35-233 13-208 (280)
45 PF13429 TPR_15: Tetratricopep 99.7 9.6E-17 2.1E-21 149.0 10.6 260 1-301 14-276 (280)
46 KOG0547 Translocase of outer m 99.7 6E-13 1.3E-17 121.2 34.0 223 405-633 337-565 (606)
47 KOG1126 DNA-binding cell divis 99.7 1.6E-14 3.5E-19 136.9 24.8 285 81-424 334-621 (638)
48 KOG1173 Anaphase-promoting com 99.7 1.7E-12 3.6E-17 120.7 36.5 509 65-614 15-531 (611)
49 TIGR00540 hemY_coli hemY prote 99.7 3.4E-13 7.5E-18 131.8 34.2 290 335-632 95-397 (409)
50 KOG0547 Translocase of outer m 99.7 2.1E-12 4.5E-17 117.8 35.5 351 69-458 118-491 (606)
51 PRK10747 putative protoheme IX 99.7 4.8E-13 1E-17 130.0 34.1 291 113-457 96-389 (398)
52 KOG2047 mRNA splicing factor [ 99.7 9.9E-10 2.1E-14 104.1 52.9 588 27-663 24-717 (835)
53 KOG1156 N-terminal acetyltrans 99.7 1.6E-10 3.5E-15 109.6 47.8 150 43-196 20-169 (700)
54 COG2956 Predicted N-acetylgluc 99.7 9.9E-13 2.1E-17 113.4 29.9 301 30-387 36-346 (389)
55 KOG1156 N-terminal acetyltrans 99.6 3.3E-11 7.2E-16 114.1 41.3 457 75-561 16-509 (700)
56 COG3071 HemY Uncharacterized e 99.6 1.9E-12 4.1E-17 115.4 31.4 285 43-386 97-388 (400)
57 KOG1173 Anaphase-promoting com 99.6 1.7E-11 3.6E-16 114.3 37.4 478 13-563 34-518 (611)
58 KOG4318 Bicoid mRNA stability 99.6 6.5E-12 1.4E-16 122.9 36.0 513 88-664 12-589 (1088)
59 COG2956 Predicted N-acetylgluc 99.6 1.9E-12 4.1E-17 111.7 28.5 229 113-388 47-278 (389)
60 KOG4162 Predicted calmodulin-b 99.6 5.3E-10 1.2E-14 108.4 47.9 508 78-664 239-778 (799)
61 KOG3785 Uncharacterized conser 99.6 9E-11 2E-15 102.8 37.7 450 37-564 29-491 (557)
62 COG3071 HemY Uncharacterized e 99.6 1.4E-11 3E-16 110.0 32.8 293 286-633 97-389 (400)
63 PRK12370 invasion protein regu 99.6 4E-13 8.6E-18 136.5 26.6 203 27-233 253-469 (553)
64 PRK12370 invasion protein regu 99.6 6.1E-13 1.3E-17 135.2 26.5 218 9-233 275-501 (553)
65 KOG4318 Bicoid mRNA stability 99.6 5.5E-10 1.2E-14 109.8 44.4 229 17-255 12-286 (1088)
66 KOG2376 Signal recognition par 99.6 5.4E-10 1.2E-14 105.0 41.4 125 106-236 17-141 (652)
67 KOG4162 Predicted calmodulin-b 99.6 1.4E-09 3E-14 105.7 44.0 445 134-634 322-783 (799)
68 KOG1129 TPR repeat-containing 99.6 5E-13 1.1E-17 115.3 18.2 233 70-354 227-459 (478)
69 TIGR02521 type_IV_pilW type IV 99.5 1.9E-12 4.1E-17 118.1 23.2 200 29-233 30-231 (234)
70 KOG1127 TPR repeat-containing 99.5 1.4E-09 3E-14 108.3 41.7 385 11-419 474-909 (1238)
71 KOG1127 TPR repeat-containing 99.5 6.6E-10 1.4E-14 110.6 39.1 601 32-650 461-1119(1238)
72 PF12569 NARP1: NMDA receptor- 99.5 1.7E-09 3.8E-14 105.8 40.9 298 31-386 5-332 (517)
73 PF12569 NARP1: NMDA receptor- 99.5 1.3E-09 2.7E-14 106.8 39.7 308 68-422 6-333 (517)
74 KOG2376 Signal recognition par 99.5 7.7E-09 1.7E-13 97.4 42.3 467 32-560 14-517 (652)
75 KOG1129 TPR repeat-containing 99.5 2.4E-12 5.1E-17 111.2 17.6 225 3-233 231-457 (478)
76 COG3063 PilF Tfp pilus assembl 99.5 3E-11 6.6E-16 99.6 22.8 202 32-240 37-240 (250)
77 PRK11189 lipoprotein NlpI; Pro 99.5 3.7E-11 8E-16 111.5 25.2 221 6-235 37-266 (296)
78 TIGR02521 type_IV_pilW type IV 99.5 8.4E-12 1.8E-16 113.7 20.8 194 2-199 38-232 (234)
79 KOG3617 WD40 and TPR repeat-co 99.5 3.4E-09 7.3E-14 103.4 37.3 247 6-350 739-993 (1416)
80 KOG1174 Anaphase-promoting com 99.4 1E-08 2.2E-13 92.1 36.2 271 166-493 228-500 (564)
81 KOG1174 Anaphase-promoting com 99.4 5.9E-08 1.3E-12 87.4 40.8 266 274-564 233-501 (564)
82 KOG3616 Selective LIM binding 99.4 4.1E-08 9E-13 94.9 40.7 404 7-491 744-1182(1636)
83 PRK11189 lipoprotein NlpI; Pro 99.4 1.5E-10 3.3E-15 107.5 24.2 233 36-303 32-266 (296)
84 KOG0985 Vesicle coat protein c 99.4 7.5E-07 1.6E-11 89.5 51.0 30 358-387 983-1012(1666)
85 KOG4340 Uncharacterized conser 99.4 3E-09 6.5E-14 91.2 27.2 199 32-237 12-210 (459)
86 KOG0548 Molecular co-chaperone 99.3 1.5E-08 3.3E-13 94.6 32.1 221 328-565 228-457 (539)
87 KOG0548 Molecular co-chaperone 99.3 1.5E-08 3.2E-13 94.7 31.8 91 366-458 365-455 (539)
88 KOG4340 Uncharacterized conser 99.3 2.1E-09 4.6E-14 92.1 24.3 185 5-201 20-209 (459)
89 COG3063 PilF Tfp pilus assembl 99.3 5.7E-10 1.2E-14 92.2 20.1 198 5-208 45-243 (250)
90 cd05804 StaR_like StaR_like; a 99.3 7.7E-09 1.7E-13 100.6 31.9 311 29-352 5-335 (355)
91 KOG1840 Kinesin light chain [C 99.3 4.7E-10 1E-14 108.3 22.3 247 101-386 199-477 (508)
92 KOG1840 Kinesin light chain [C 99.3 4E-10 8.7E-15 108.7 21.6 246 66-351 199-477 (508)
93 KOG3616 Selective LIM binding 99.3 1.1E-07 2.5E-12 92.0 37.5 310 144-528 715-1024(1636)
94 KOG0985 Vesicle coat protein c 99.3 1.9E-06 4.1E-11 86.8 49.8 145 11-160 588-749 (1666)
95 KOG0624 dsRNA-activated protei 99.3 2.8E-08 6.2E-13 87.1 29.9 318 30-424 38-371 (504)
96 KOG3617 WD40 and TPR repeat-co 99.3 1.9E-06 4.2E-11 84.8 47.6 172 34-233 804-995 (1416)
97 cd05804 StaR_like StaR_like; a 99.3 4.8E-08 1E-12 95.0 33.7 311 63-422 3-335 (355)
98 KOG1125 TPR repeat-containing 99.2 1.7E-09 3.7E-14 101.7 19.9 227 35-301 290-526 (579)
99 KOG0624 dsRNA-activated protei 99.2 6.1E-08 1.3E-12 85.1 26.4 295 6-354 49-371 (504)
100 KOG1125 TPR repeat-containing 99.2 3.3E-09 7.2E-14 99.8 18.6 221 2-233 292-526 (579)
101 PF13041 PPR_2: PPR repeat fam 99.2 1.3E-10 2.8E-15 74.4 6.5 50 568-617 1-50 (50)
102 PRK10370 formate-dependent nit 99.1 4.3E-09 9.4E-14 90.5 17.0 120 43-165 52-174 (198)
103 PF13041 PPR_2: PPR repeat fam 99.1 2.2E-10 4.8E-15 73.3 6.5 49 497-545 1-49 (50)
104 TIGR03302 OM_YfiO outer membra 99.1 9.4E-09 2E-13 93.0 19.0 187 27-234 30-232 (235)
105 COG5010 TadD Flp pilus assembl 99.1 1.3E-08 2.8E-13 86.4 17.3 159 70-231 70-228 (257)
106 PF04733 Coatomer_E: Coatomer 99.1 7.7E-09 1.7E-13 94.3 17.1 251 367-634 9-265 (290)
107 KOG1914 mRNA cleavage and poly 99.1 1.3E-05 2.9E-10 75.4 41.0 177 410-588 347-528 (656)
108 PF04733 Coatomer_E: Coatomer 99.0 3.7E-08 8.1E-13 89.9 20.1 67 321-388 198-265 (290)
109 PRK15359 type III secretion sy 99.0 8.4E-09 1.8E-13 83.8 14.3 114 29-145 23-136 (144)
110 PLN02789 farnesyltranstransfer 99.0 2.2E-07 4.7E-12 86.1 25.2 212 34-251 41-266 (320)
111 PLN02789 farnesyltranstransfer 99.0 9.5E-08 2.1E-12 88.4 22.6 208 4-217 46-267 (320)
112 PRK04841 transcriptional regul 99.0 1.9E-06 4.2E-11 95.3 36.2 381 32-457 343-759 (903)
113 KOG2053 Mitochondrial inherita 99.0 4.6E-05 1E-09 76.5 44.7 223 8-235 22-256 (932)
114 KOG2053 Mitochondrial inherita 99.0 4.9E-05 1.1E-09 76.3 46.6 182 42-228 21-213 (932)
115 PRK15179 Vi polysaccharide bio 99.0 3.1E-08 6.8E-13 101.2 18.5 148 25-176 81-228 (694)
116 TIGR03302 OM_YfiO outer membra 99.0 7E-08 1.5E-12 87.3 19.0 183 63-265 30-228 (235)
117 PRK04841 transcriptional regul 99.0 6.6E-06 1.4E-10 91.1 38.0 334 332-665 382-756 (903)
118 COG5010 TadD Flp pilus assembl 98.9 1.5E-07 3.4E-12 80.0 18.1 186 5-197 44-229 (257)
119 KOG1914 mRNA cleavage and poly 98.9 5.1E-05 1.1E-09 71.7 43.0 186 445-633 309-500 (656)
120 PRK10370 formate-dependent nit 98.9 1.5E-07 3.3E-12 81.0 17.1 154 37-206 23-179 (198)
121 KOG3060 Uncharacterized conser 98.9 7.2E-07 1.6E-11 75.3 19.3 188 9-200 26-221 (289)
122 PRK14720 transcript cleavage f 98.9 7.5E-07 1.6E-11 92.0 23.6 241 26-335 27-268 (906)
123 PRK15179 Vi polysaccharide bio 98.8 3.7E-07 8E-12 93.5 20.4 146 63-211 83-228 (694)
124 PRK15359 type III secretion sy 98.8 1.5E-07 3.3E-12 76.5 14.3 110 50-165 13-122 (144)
125 KOG1070 rRNA processing protei 98.8 1.8E-06 3.9E-11 90.1 24.7 223 12-239 1442-1668(1710)
126 KOG1128 Uncharacterized conser 98.8 2.2E-06 4.8E-11 83.6 23.9 221 391-633 395-615 (777)
127 KOG1070 rRNA processing protei 98.8 5E-06 1.1E-10 87.0 26.4 227 392-625 1456-1691(1710)
128 TIGR02552 LcrH_SycD type III s 98.8 2.4E-07 5.1E-12 75.4 13.0 109 53-164 6-114 (135)
129 KOG3060 Uncharacterized conser 98.7 9E-07 1.9E-11 74.7 16.1 155 7-165 64-221 (289)
130 PRK14720 transcript cleavage f 98.7 6.2E-06 1.3E-10 85.5 25.6 150 63-233 28-177 (906)
131 COG4783 Putative Zn-dependent 98.7 1.1E-06 2.4E-11 81.7 18.1 201 10-234 252-454 (484)
132 TIGR02552 LcrH_SycD type III s 98.7 4.6E-07 1E-11 73.7 13.3 115 18-136 6-120 (135)
133 KOG1128 Uncharacterized conser 98.7 6.3E-06 1.4E-10 80.6 22.6 243 318-581 392-634 (777)
134 COG4783 Putative Zn-dependent 98.7 7.3E-06 1.6E-10 76.5 21.6 189 41-234 248-437 (484)
135 KOG3081 Vesicle coat complex C 98.6 2.8E-05 6E-10 66.6 21.5 258 357-634 8-271 (299)
136 KOG3081 Vesicle coat complex C 98.6 0.00011 2.4E-09 63.0 23.7 121 398-528 112-236 (299)
137 PF09976 TPR_21: Tetratricopep 98.6 2.6E-06 5.6E-11 69.8 13.7 126 32-161 14-144 (145)
138 TIGR02795 tol_pal_ybgF tol-pal 98.5 3.8E-06 8.2E-11 66.6 12.9 107 30-138 2-113 (119)
139 PF12854 PPR_1: PPR repeat 98.5 1.9E-07 4.1E-12 53.2 3.6 32 200-231 2-33 (34)
140 COG3898 Uncharacterized membra 98.4 0.0012 2.5E-08 60.2 28.5 296 33-388 85-392 (531)
141 COG4700 Uncharacterized protei 98.4 6.7E-05 1.5E-09 60.3 17.1 152 38-194 64-217 (251)
142 PF09976 TPR_21: Tetratricopep 98.4 1.3E-05 2.8E-10 65.6 13.8 117 113-231 23-144 (145)
143 PLN03088 SGT1, suppressor of 98.4 7.5E-06 1.6E-10 78.1 14.1 110 33-145 5-114 (356)
144 PRK15363 pathogenicity island 98.4 8.3E-06 1.8E-10 64.9 11.4 95 33-130 38-132 (157)
145 KOG0550 Molecular chaperone (D 98.4 0.00052 1.1E-08 62.9 23.7 292 35-388 54-350 (486)
146 PRK10866 outer membrane biogen 98.3 0.00015 3.3E-09 64.8 20.6 184 29-232 31-239 (243)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 7.9E-06 1.7E-10 77.3 12.6 127 32-164 171-297 (395)
148 PF12854 PPR_1: PPR repeat 98.3 9.8E-07 2.1E-11 50.3 4.1 32 600-631 2-33 (34)
149 PRK15363 pathogenicity island 98.3 8.2E-06 1.8E-10 64.9 10.6 98 66-164 35-132 (157)
150 cd00189 TPR Tetratricopeptide 98.3 7.9E-06 1.7E-10 62.0 10.4 97 32-131 2-98 (100)
151 COG4235 Cytochrome c biogenesi 98.3 3.5E-05 7.7E-10 68.0 14.5 101 63-164 153-256 (287)
152 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.2E-05 4.7E-10 74.4 14.1 130 65-199 168-297 (395)
153 KOG0553 TPR repeat-containing 98.3 1E-05 2.2E-10 70.7 10.6 132 73-207 88-223 (304)
154 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.7E-05 8E-10 60.9 12.4 99 67-165 3-106 (119)
155 PRK02603 photosystem I assembl 98.2 6.1E-05 1.3E-09 63.9 14.2 91 66-156 35-127 (172)
156 PF07079 DUF1347: Protein of u 98.2 0.0063 1.4E-07 56.9 39.6 137 38-180 14-177 (549)
157 cd00189 TPR Tetratricopeptide 98.2 2.3E-05 4.9E-10 59.3 10.2 95 69-164 3-97 (100)
158 PRK02603 photosystem I assembl 98.2 5.8E-05 1.3E-09 64.0 13.4 97 28-125 33-130 (172)
159 PF12895 Apc3: Anaphase-promot 98.2 2.9E-06 6.2E-11 61.8 4.5 82 43-126 2-83 (84)
160 KOG0553 TPR repeat-containing 98.1 3.2E-05 6.9E-10 67.7 10.8 129 110-241 90-222 (304)
161 PF12895 Apc3: Anaphase-promot 98.1 3.7E-06 8E-11 61.2 4.5 81 79-160 2-83 (84)
162 CHL00033 ycf3 photosystem I as 98.1 3.5E-05 7.6E-10 65.1 11.0 101 46-146 15-117 (168)
163 KOG2041 WD40 repeat protein [G 98.1 0.0085 1.9E-07 59.1 27.2 243 30-385 657-904 (1189)
164 COG4235 Cytochrome c biogenesi 98.1 0.00016 3.4E-09 64.0 14.2 118 13-134 140-260 (287)
165 PRK10153 DNA-binding transcrip 98.1 0.00019 4E-09 71.8 16.5 139 24-165 331-483 (517)
166 KOG0550 Molecular chaperone (D 98.1 0.002 4.2E-08 59.3 21.1 273 8-354 62-351 (486)
167 PLN03088 SGT1, suppressor of 98.1 7.2E-05 1.6E-09 71.5 13.0 93 72-165 8-100 (356)
168 COG4700 Uncharacterized protei 98.0 0.0023 5E-08 51.9 18.5 136 496-633 86-221 (251)
169 PF13414 TPR_11: TPR repeat; P 98.0 1.8E-05 3.8E-10 55.1 6.2 66 29-96 2-68 (69)
170 PF13432 TPR_16: Tetratricopep 98.0 2.4E-05 5.1E-10 53.6 6.6 59 36-96 3-61 (65)
171 PF13432 TPR_16: Tetratricopep 98.0 2.3E-05 5.1E-10 53.6 6.2 56 109-164 5-60 (65)
172 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.017 3.6E-07 54.1 35.3 131 499-634 397-531 (660)
173 PF13525 YfiO: Outer membrane 97.9 0.0017 3.7E-08 56.6 18.5 178 28-225 3-198 (203)
174 PRK10866 outer membrane biogen 97.9 0.0025 5.5E-08 57.1 19.4 70 65-135 31-103 (243)
175 PF12688 TPR_5: Tetratrico pep 97.9 0.00044 9.4E-09 53.3 12.5 98 31-128 2-102 (120)
176 PF05843 Suf: Suppressor of fo 97.9 0.00015 3.3E-09 66.7 12.0 129 68-198 3-135 (280)
177 PF07079 DUF1347: Protein of u 97.9 0.021 4.6E-07 53.6 39.7 139 4-147 15-179 (549)
178 CHL00033 ycf3 photosystem I as 97.9 0.00026 5.7E-09 59.8 12.5 111 14-125 18-137 (168)
179 PF14938 SNAP: Soluble NSF att 97.9 0.00057 1.2E-08 63.3 15.5 97 138-234 117-225 (282)
180 PF05843 Suf: Suppressor of fo 97.9 0.00021 4.6E-09 65.8 12.4 144 103-250 3-150 (280)
181 TIGR00756 PPR pentatricopeptid 97.9 2.6E-05 5.6E-10 45.4 4.2 33 572-604 2-34 (35)
182 KOG1130 Predicted G-alpha GTPa 97.9 0.00025 5.4E-09 64.8 12.0 276 36-352 23-343 (639)
183 TIGR00756 PPR pentatricopeptid 97.9 2.5E-05 5.5E-10 45.5 4.1 33 207-239 2-34 (35)
184 PF14559 TPR_19: Tetratricopep 97.9 3.5E-05 7.6E-10 53.4 5.3 52 42-95 3-54 (68)
185 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.8E-10 45.3 3.6 33 206-238 2-34 (34)
186 KOG2041 WD40 repeat protein [G 97.8 0.035 7.6E-07 55.0 26.5 178 27-231 689-878 (1189)
187 PF13812 PPR_3: Pentatricopept 97.8 3.1E-05 6.7E-10 44.6 4.1 32 572-603 3-34 (34)
188 PF13414 TPR_11: TPR repeat; P 97.8 5.4E-05 1.2E-09 52.6 6.1 64 66-130 3-67 (69)
189 PRK10803 tol-pal system protei 97.8 0.00038 8.2E-09 62.7 12.6 90 41-132 154-248 (263)
190 PF14559 TPR_19: Tetratricopep 97.8 6.8E-05 1.5E-09 52.0 5.9 52 113-164 3-54 (68)
191 COG3898 Uncharacterized membra 97.8 0.031 6.6E-07 51.4 27.5 285 8-353 97-392 (531)
192 PRK15331 chaperone protein Sic 97.8 0.00064 1.4E-08 54.6 11.4 92 35-129 42-133 (165)
193 PRK10153 DNA-binding transcrip 97.7 0.0019 4.2E-08 64.7 17.1 137 97-235 333-483 (517)
194 PRK11906 transcriptional regul 97.7 0.0045 9.7E-08 58.9 18.2 163 31-197 252-434 (458)
195 PF12688 TPR_5: Tetratrico pep 97.7 0.00052 1.1E-08 52.9 10.2 91 2-94 8-103 (120)
196 PF13525 YfiO: Outer membrane 97.7 0.0017 3.6E-08 56.7 14.6 170 2-189 12-197 (203)
197 PF14938 SNAP: Soluble NSF att 97.7 0.02 4.4E-07 53.1 22.2 112 438-565 103-227 (282)
198 PF10037 MRP-S27: Mitochondria 97.7 0.00095 2.1E-08 63.8 13.0 111 497-608 64-176 (429)
199 PF10037 MRP-S27: Mitochondria 97.6 0.00068 1.5E-08 64.8 11.9 122 321-442 63-186 (429)
200 KOG1258 mRNA processing protei 97.6 0.078 1.7E-06 52.1 34.8 132 101-233 45-179 (577)
201 PF13512 TPR_18: Tetratricopep 97.6 0.0018 4E-08 50.8 11.9 86 27-112 7-93 (142)
202 KOG1130 Predicted G-alpha GTPa 97.6 0.0014 3E-08 60.1 12.8 273 74-387 25-343 (639)
203 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.061 1.3E-06 50.5 37.4 134 429-565 397-533 (660)
204 COG4105 ComL DNA uptake lipopr 97.6 0.015 3.3E-07 50.6 18.3 185 29-233 33-232 (254)
205 PF08631 SPO22: Meiosis protei 97.6 0.057 1.2E-06 49.9 23.7 164 41-205 4-192 (278)
206 PF13371 TPR_9: Tetratricopept 97.6 0.00047 1E-08 48.5 7.6 56 38-95 3-58 (73)
207 PRK10803 tol-pal system protei 97.5 0.0015 3.3E-08 58.8 12.2 90 110-199 152-246 (263)
208 PRK15331 chaperone protein Sic 97.5 0.0026 5.7E-08 51.2 11.7 92 71-163 42-133 (165)
209 PF13371 TPR_9: Tetratricopept 97.5 0.00042 9.1E-09 48.8 6.6 62 74-136 3-64 (73)
210 KOG2796 Uncharacterized conser 97.5 0.0023 5E-08 55.0 11.4 163 36-209 155-323 (366)
211 PF01535 PPR: PPR repeat; Int 97.5 0.00017 3.7E-09 40.4 3.4 29 207-235 2-30 (31)
212 PF01535 PPR: PPR repeat; Int 97.4 0.00019 4E-09 40.2 3.2 28 572-599 2-29 (31)
213 COG4785 NlpI Lipoprotein NlpI, 97.4 0.015 3.3E-07 48.6 15.1 190 33-234 68-266 (297)
214 COG1729 Uncharacterized protei 97.4 0.0043 9.4E-08 54.4 12.6 100 34-135 145-249 (262)
215 PF13281 DUF4071: Domain of un 97.4 0.045 9.8E-07 51.5 19.9 107 25-131 136-256 (374)
216 PF08579 RPM2: Mitochondrial r 97.4 0.003 6.6E-08 46.7 9.6 72 474-545 35-115 (120)
217 COG3118 Thioredoxin domain-con 97.4 0.016 3.4E-07 51.5 15.7 150 32-184 136-286 (304)
218 PF08579 RPM2: Mitochondrial r 97.4 0.0039 8.5E-08 46.1 10.0 78 575-652 30-116 (120)
219 KOG2114 Vacuolar assembly/sort 97.3 0.18 4E-06 51.5 24.3 181 30-231 334-516 (933)
220 KOG0543 FKBP-type peptidyl-pro 97.3 0.0043 9.4E-08 57.4 11.4 141 35-198 213-354 (397)
221 PF04840 Vps16_C: Vps16, C-ter 97.2 0.18 4E-06 47.1 26.0 106 275-416 179-284 (319)
222 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0086 1.9E-07 57.0 13.0 66 28-95 73-141 (453)
223 PF13512 TPR_18: Tetratricopep 97.2 0.013 2.7E-07 46.2 11.8 82 65-146 9-93 (142)
224 PF06239 ECSIT: Evolutionarily 97.1 0.014 3.1E-07 49.3 12.4 87 463-549 46-153 (228)
225 KOG1538 Uncharacterized conser 97.1 0.061 1.3E-06 52.9 18.1 21 542-562 825-845 (1081)
226 PF06239 ECSIT: Evolutionarily 97.1 0.014 3.1E-07 49.3 12.2 38 220-257 118-155 (228)
227 PF13428 TPR_14: Tetratricopep 97.1 0.0016 3.6E-08 39.9 5.0 42 30-73 1-42 (44)
228 KOG2610 Uncharacterized conser 97.1 0.029 6.2E-07 50.4 14.0 153 76-230 113-272 (491)
229 COG0457 NrfG FOG: TPR repeat [ 97.0 0.25 5.5E-06 44.9 23.7 200 30-233 59-264 (291)
230 COG1729 Uncharacterized protei 97.0 0.0066 1.4E-07 53.3 9.8 94 5-98 151-247 (262)
231 PF13281 DUF4071: Domain of un 97.0 0.2 4.3E-06 47.4 19.8 164 469-635 146-335 (374)
232 COG3118 Thioredoxin domain-con 97.0 0.073 1.6E-06 47.4 15.9 125 108-234 141-265 (304)
233 PF03704 BTAD: Bacterial trans 97.0 0.038 8.2E-07 45.3 13.9 69 573-642 65-138 (146)
234 KOG0543 FKBP-type peptidyl-pro 96.9 0.014 3E-07 54.2 11.6 96 137-234 259-355 (397)
235 PF13424 TPR_12: Tetratricopep 96.9 0.0021 4.5E-08 45.9 5.3 65 30-94 5-74 (78)
236 KOG1585 Protein required for f 96.9 0.087 1.9E-06 45.2 15.1 194 29-227 30-249 (308)
237 KOG4555 TPR repeat-containing 96.9 0.023 5E-07 43.1 10.6 94 36-131 49-145 (175)
238 KOG1258 mRNA processing protei 96.9 0.5 1.1E-05 46.7 39.2 131 31-164 46-180 (577)
239 KOG2796 Uncharacterized conser 96.9 0.25 5.3E-06 43.1 23.3 140 466-609 179-323 (366)
240 COG4785 NlpI Lipoprotein NlpI, 96.9 0.064 1.4E-06 45.1 13.6 182 7-200 77-267 (297)
241 PF13428 TPR_14: Tetratricopep 96.8 0.0031 6.8E-08 38.6 4.5 40 103-142 3-42 (44)
242 PF03704 BTAD: Bacterial trans 96.8 0.0094 2E-07 49.0 8.7 55 36-92 68-122 (146)
243 PF08631 SPO22: Meiosis protei 96.8 0.46 9.9E-06 44.0 23.0 228 4-232 2-273 (278)
244 PRK11906 transcriptional regul 96.7 0.073 1.6E-06 51.0 14.8 147 10-160 273-432 (458)
245 KOG2280 Vacuolar assembly/sort 96.7 0.85 1.8E-05 46.3 31.5 106 537-662 687-792 (829)
246 PF04840 Vps16_C: Vps16, C-ter 96.7 0.55 1.2E-05 44.0 28.9 79 436-524 184-262 (319)
247 KOG1538 Uncharacterized conser 96.7 0.63 1.4E-05 46.3 20.8 101 323-458 746-846 (1081)
248 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.043 9.4E-07 52.4 13.0 67 63-130 72-141 (453)
249 KOG4555 TPR repeat-containing 96.7 0.051 1.1E-06 41.4 10.7 89 112-200 54-145 (175)
250 KOG1585 Protein required for f 96.6 0.35 7.5E-06 41.8 16.5 210 108-382 38-250 (308)
251 PF13424 TPR_12: Tetratricopep 96.6 0.0079 1.7E-07 42.8 6.2 60 606-665 6-71 (78)
252 KOG2610 Uncharacterized conser 96.5 0.31 6.8E-06 44.1 16.5 164 31-196 104-273 (491)
253 KOG1941 Acetylcholine receptor 96.2 0.12 2.6E-06 47.2 12.4 225 9-233 20-274 (518)
254 KOG2114 Vacuolar assembly/sort 96.2 1.8 3.9E-05 44.8 26.6 115 107-232 340-458 (933)
255 PF10345 Cohesin_load: Cohesin 96.2 2.1 4.5E-05 45.1 37.4 186 47-233 38-253 (608)
256 COG4649 Uncharacterized protei 96.2 0.32 6.9E-06 39.5 13.0 128 112-239 69-201 (221)
257 KOG1941 Acetylcholine receptor 96.1 0.098 2.1E-06 47.7 11.3 233 40-301 16-274 (518)
258 PF10300 DUF3808: Protein of u 96.1 0.29 6.3E-06 49.0 16.0 85 115-199 247-334 (468)
259 PF12921 ATP13: Mitochondrial 96.1 0.11 2.4E-06 40.6 10.2 96 499-615 2-98 (126)
260 PF12921 ATP13: Mitochondrial 96.0 0.15 3.3E-06 40.0 10.8 101 463-583 1-101 (126)
261 PF04053 Coatomer_WDAD: Coatom 96.0 0.16 3.5E-06 50.0 13.4 103 112-232 272-374 (443)
262 PF10300 DUF3808: Protein of u 96.0 0.72 1.6E-05 46.3 17.9 168 208-420 191-373 (468)
263 PF04184 ST7: ST7 protein; In 95.9 1.8 3.9E-05 42.1 19.0 149 70-233 172-323 (539)
264 PF04053 Coatomer_WDAD: Coatom 95.9 0.27 6E-06 48.4 14.3 155 181-419 272-427 (443)
265 PF13431 TPR_17: Tetratricopep 95.9 0.0093 2E-07 33.9 2.6 32 53-86 2-33 (34)
266 KOG2280 Vacuolar assembly/sort 95.8 2.6 5.7E-05 43.1 32.9 118 180-298 399-532 (829)
267 COG4649 Uncharacterized protei 95.8 0.43 9.3E-06 38.8 12.3 133 66-199 59-196 (221)
268 PF09205 DUF1955: Domain of un 95.8 0.64 1.4E-05 35.8 13.6 139 476-637 14-152 (161)
269 PF04184 ST7: ST7 protein; In 95.7 2.2 4.8E-05 41.5 20.5 59 503-561 263-322 (539)
270 PF13431 TPR_17: Tetratricopep 95.3 0.022 4.8E-07 32.3 2.8 32 124-155 2-33 (34)
271 COG0457 NrfG FOG: TPR repeat [ 95.3 2.1 4.6E-05 38.6 28.6 223 407-634 36-265 (291)
272 KOG4648 Uncharacterized conser 95.1 0.14 3.1E-06 46.3 8.4 57 36-94 103-159 (536)
273 COG4105 ComL DNA uptake lipopr 95.0 2.3 5E-05 37.6 21.5 19 544-562 177-195 (254)
274 PF08424 NRDE-2: NRDE-2, neces 95.0 0.99 2.1E-05 42.7 14.6 108 52-162 7-129 (321)
275 smart00299 CLH Clathrin heavy 94.9 1.7 3.6E-05 35.3 14.7 42 106-147 12-53 (140)
276 COG3629 DnrI DNA-binding trans 94.8 0.26 5.6E-06 44.5 9.3 60 33-94 156-215 (280)
277 PRK11619 lytic murein transgly 94.7 6.5 0.00014 41.3 38.0 391 68-501 101-513 (644)
278 KOG2062 26S proteasome regulat 94.7 5.8 0.00013 40.7 36.9 121 473-598 510-634 (929)
279 PF09613 HrpB1_HrpK: Bacterial 94.7 1.4 3.1E-05 35.8 12.3 53 112-164 21-73 (160)
280 KOG4234 TPR repeat-containing 94.6 0.44 9.6E-06 39.7 9.4 55 110-164 143-197 (271)
281 PF07719 TPR_2: Tetratricopept 94.5 0.075 1.6E-06 30.1 3.8 30 31-60 2-31 (34)
282 PF13170 DUF4003: Protein of u 94.5 3.5 7.7E-05 38.3 16.3 132 481-614 79-226 (297)
283 PF06552 TOM20_plant: Plant sp 94.4 0.55 1.2E-05 38.7 9.4 33 117-149 51-83 (186)
284 COG3629 DnrI DNA-binding trans 94.2 0.64 1.4E-05 42.0 10.4 78 535-614 154-236 (280)
285 KOG2396 HAT (Half-A-TPR) repea 94.2 6 0.00013 38.6 40.5 79 86-165 91-170 (568)
286 smart00299 CLH Clathrin heavy 94.0 2.7 5.9E-05 34.0 15.0 128 67-216 8-136 (140)
287 PF13176 TPR_7: Tetratricopept 93.9 0.12 2.7E-06 29.7 3.8 24 33-56 2-25 (36)
288 PF00515 TPR_1: Tetratricopept 93.8 0.1 2.2E-06 29.6 3.3 29 32-60 3-31 (34)
289 PRK15180 Vi polysaccharide bio 93.8 6.8 0.00015 37.9 24.1 116 13-132 307-422 (831)
290 KOG4234 TPR repeat-containing 93.8 0.76 1.6E-05 38.4 9.1 91 109-200 103-198 (271)
291 PF06552 TOM20_plant: Plant sp 93.6 0.95 2.1E-05 37.4 9.4 112 117-237 7-139 (186)
292 KOG4648 Uncharacterized conser 93.6 0.37 8E-06 43.8 7.7 91 73-164 104-194 (536)
293 COG2976 Uncharacterized protei 93.6 2.7 5.9E-05 35.3 12.0 92 107-200 95-189 (207)
294 KOG2062 26S proteasome regulat 93.5 11 0.00023 39.0 34.7 26 208-233 213-238 (929)
295 PF13176 TPR_7: Tetratricopept 93.4 0.17 3.7E-06 29.2 3.8 25 69-93 2-26 (36)
296 KOG1920 IkappaB kinase complex 93.4 14 0.00031 40.4 22.4 31 321-352 788-820 (1265)
297 PF10602 RPN7: 26S proteasome 93.4 1.1 2.5E-05 37.8 10.1 62 536-598 38-101 (177)
298 PF00515 TPR_1: Tetratricopept 93.2 0.23 5E-06 28.1 4.1 30 67-96 2-31 (34)
299 COG2909 MalT ATP-dependent tra 93.2 13 0.00029 39.3 26.8 226 439-664 425-683 (894)
300 PF13174 TPR_6: Tetratricopept 93.1 0.14 2.9E-06 28.7 3.0 29 32-60 2-30 (33)
301 KOG3941 Intermediate in Toll s 93.0 0.88 1.9E-05 40.3 8.9 34 516-549 140-173 (406)
302 PRK15180 Vi polysaccharide bio 93.0 9.2 0.0002 37.0 28.0 120 113-234 301-420 (831)
303 KOG3941 Intermediate in Toll s 92.8 1.1 2.5E-05 39.6 9.3 89 321-409 64-173 (406)
304 COG1747 Uncharacterized N-term 92.7 11 0.00024 37.0 22.0 181 26-215 62-249 (711)
305 PF07719 TPR_2: Tetratricopept 92.6 0.3 6.5E-06 27.5 4.1 28 68-95 3-30 (34)
306 PF07035 Mic1: Colon cancer-as 92.6 5.2 0.00011 33.1 15.1 47 191-241 15-61 (167)
307 PF04910 Tcf25: Transcriptiona 92.4 11 0.00024 36.3 17.7 141 24-164 34-222 (360)
308 PF09205 DUF1955: Domain of un 92.3 4.4 9.6E-05 31.5 15.0 20 283-302 12-31 (161)
309 KOG2396 HAT (Half-A-TPR) repea 92.2 13 0.00027 36.6 39.7 100 531-633 456-558 (568)
310 PRK11619 lytic murein transgly 92.0 19 0.0004 38.1 40.5 119 371-492 253-374 (644)
311 PF13170 DUF4003: Protein of u 91.9 11 0.00024 35.1 20.4 189 30-220 16-232 (297)
312 PF10602 RPN7: 26S proteasome 91.8 3.8 8.3E-05 34.7 11.3 62 172-233 38-101 (177)
313 KOG1920 IkappaB kinase complex 91.6 25 0.00053 38.8 26.2 123 107-233 683-820 (1265)
314 KOG1550 Extracellular protein 91.4 20 0.00043 37.2 28.2 177 46-236 228-428 (552)
315 PF10345 Cohesin_load: Cohesin 91.1 23 0.00049 37.4 37.1 161 63-233 27-207 (608)
316 PF00637 Clathrin: Region in C 91.0 0.02 4.3E-07 46.8 -3.1 45 78-122 19-63 (143)
317 KOG4507 Uncharacterized conser 90.9 1.6 3.4E-05 43.2 8.8 87 79-165 620-706 (886)
318 KOG1586 Protein required for f 90.8 10 0.00022 33.0 16.3 60 107-166 119-185 (288)
319 PHA02537 M terminase endonucle 90.8 8.8 0.00019 33.8 12.5 82 15-102 68-149 (230)
320 PF09613 HrpB1_HrpK: Bacterial 90.7 8.1 0.00018 31.6 13.2 54 283-353 20-73 (160)
321 PF02259 FAT: FAT domain; Int 90.6 17 0.00037 35.1 23.4 66 497-562 144-212 (352)
322 COG2976 Uncharacterized protei 90.4 10 0.00022 32.1 13.9 132 500-635 55-189 (207)
323 PF07721 TPR_4: Tetratricopept 90.3 0.39 8.5E-06 25.1 2.6 23 32-54 3-25 (26)
324 COG1747 Uncharacterized N-term 90.3 20 0.00043 35.3 24.4 181 426-615 63-249 (711)
325 KOG0545 Aryl-hydrocarbon recep 90.2 12 0.00025 32.9 12.3 98 68-165 180-294 (329)
326 cd00923 Cyt_c_Oxidase_Va Cytoc 90.0 2.6 5.6E-05 30.6 7.0 59 588-647 25-83 (103)
327 TIGR02561 HrpB1_HrpK type III 89.9 5.8 0.00012 31.8 9.6 12 149-160 58-69 (153)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 89.8 2.4 5.1E-05 30.8 6.7 61 83-143 24-84 (103)
329 TIGR02561 HrpB1_HrpK type III 89.7 9.3 0.0002 30.7 11.4 58 76-134 20-77 (153)
330 KOG4642 Chaperone-dependent E3 89.7 5.9 0.00013 34.5 10.2 118 38-159 18-141 (284)
331 KOG4507 Uncharacterized conser 89.5 1.9 4.1E-05 42.6 8.2 128 17-146 594-721 (886)
332 KOG0276 Vesicle coat complex C 89.5 5.9 0.00013 39.6 11.4 83 322-419 664-746 (794)
333 KOG1550 Extracellular protein 89.4 29 0.00064 36.0 27.6 180 186-424 228-427 (552)
334 PF05944 Phage_term_smal: Phag 89.2 6.4 0.00014 31.1 9.5 86 14-105 32-117 (132)
335 PF13374 TPR_10: Tetratricopep 89.1 0.67 1.4E-05 27.6 3.5 27 32-58 4-30 (42)
336 PF14561 TPR_20: Tetratricopep 89.1 5.7 0.00012 29.0 8.7 63 52-116 10-73 (90)
337 KOG2063 Vacuolar assembly/sort 88.9 38 0.00083 36.7 19.3 113 104-216 507-637 (877)
338 PF02284 COX5A: Cytochrome c o 88.8 6.6 0.00014 29.0 8.4 75 69-143 11-87 (108)
339 PF13181 TPR_8: Tetratricopept 88.6 0.75 1.6E-05 25.9 3.2 28 32-59 3-30 (34)
340 PF11207 DUF2989: Protein of u 88.6 6.6 0.00014 33.5 9.7 72 82-154 122-197 (203)
341 PF13174 TPR_6: Tetratricopept 88.5 0.75 1.6E-05 25.6 3.2 27 69-95 3-29 (33)
342 KOG4570 Uncharacterized conser 87.9 5.1 0.00011 36.4 9.1 104 316-423 56-164 (418)
343 COG0790 FOG: TPR repeat, SEL1 87.5 25 0.00054 32.9 19.6 191 40-244 51-276 (292)
344 PF02259 FAT: FAT domain; Int 87.4 29 0.00063 33.6 23.1 66 168-233 144-212 (352)
345 PF14561 TPR_20: Tetratricopep 87.4 5.9 0.00013 28.9 7.9 43 123-165 10-52 (90)
346 PF02284 COX5A: Cytochrome c o 87.1 3.2 7E-05 30.5 6.1 47 588-634 28-74 (108)
347 PF07721 TPR_4: Tetratricopept 87.0 1 2.2E-05 23.5 2.8 23 642-664 3-25 (26)
348 PF13181 TPR_8: Tetratricopept 86.9 1.6 3.5E-05 24.4 3.9 28 68-95 3-30 (34)
349 KOG0276 Vesicle coat complex C 86.8 8.5 0.00018 38.6 10.6 153 39-231 595-747 (794)
350 PRK09687 putative lyase; Provi 86.7 27 0.00058 32.4 28.7 137 498-651 141-278 (280)
351 PF13374 TPR_10: Tetratricopep 86.5 1.6 3.4E-05 26.0 4.0 27 68-94 4-30 (42)
352 KOG4642 Chaperone-dependent E3 86.1 15 0.00033 32.2 10.5 85 76-161 20-104 (284)
353 KOG4570 Uncharacterized conser 85.8 12 0.00026 34.2 10.2 101 531-633 61-163 (418)
354 TIGR03504 FimV_Cterm FimV C-te 85.4 1.6 3.5E-05 26.5 3.4 22 36-57 5-26 (44)
355 COG3947 Response regulator con 85.0 3.6 7.8E-05 36.9 6.6 60 69-129 282-341 (361)
356 PF07035 Mic1: Colon cancer-as 84.7 22 0.00047 29.6 15.4 50 345-398 15-64 (167)
357 KOG1464 COP9 signalosome, subu 84.5 29 0.00064 31.0 16.9 50 372-421 40-92 (440)
358 PF08424 NRDE-2: NRDE-2, neces 84.3 39 0.00084 32.2 16.9 123 153-303 49-184 (321)
359 smart00028 TPR Tetratricopepti 83.9 2 4.2E-05 23.2 3.4 27 32-58 3-29 (34)
360 PF11207 DUF2989: Protein of u 83.9 19 0.00041 30.9 10.1 77 582-660 119-198 (203)
361 KOG2422 Uncharacterized conser 83.7 53 0.0011 33.2 15.0 139 26-164 280-448 (665)
362 KOG3364 Membrane protein invol 83.1 17 0.00037 28.6 8.6 23 110-132 80-102 (149)
363 COG4976 Predicted methyltransf 82.7 2.8 6E-05 36.1 4.9 59 38-98 3-61 (287)
364 KOG0890 Protein kinase of the 82.6 1.3E+02 0.0027 36.7 38.2 153 35-194 1388-1542(2382)
365 KOG1308 Hsp70-interacting prot 82.2 2.8 6E-05 38.6 5.0 93 77-170 125-217 (377)
366 TIGR03504 FimV_Cterm FimV C-te 82.2 3.2 6.8E-05 25.2 3.7 23 211-233 5-27 (44)
367 KOG0376 Serine-threonine phosp 82.2 3.5 7.6E-05 40.0 5.9 55 109-163 46-100 (476)
368 PF00637 Clathrin: Region in C 82.0 0.83 1.8E-05 37.2 1.7 86 539-632 12-97 (143)
369 COG3947 Response regulator con 81.9 41 0.00088 30.7 16.3 59 573-632 282-340 (361)
370 KOG2066 Vacuolar assembly/sort 81.6 75 0.0016 33.5 26.9 25 208-232 395-419 (846)
371 COG4455 ImpE Protein of avirul 81.3 33 0.00072 29.7 10.5 59 35-95 6-64 (273)
372 KOG0376 Serine-threonine phosp 81.3 5.4 0.00012 38.7 6.8 103 33-138 7-109 (476)
373 PF14853 Fis1_TPR_C: Fis1 C-te 79.5 6.2 0.00013 25.2 4.6 28 33-60 4-31 (53)
374 KOG2471 TPR repeat-containing 78.6 73 0.0016 31.5 15.8 40 182-221 29-68 (696)
375 smart00028 TPR Tetratricopepti 78.5 3.9 8.4E-05 21.9 3.4 28 68-95 3-30 (34)
376 PF07163 Pex26: Pex26 protein; 78.0 28 0.0006 31.5 9.5 87 436-522 90-181 (309)
377 PF10579 Rapsyn_N: Rapsyn N-te 78.0 14 0.00031 25.8 6.2 57 35-92 12-69 (80)
378 KOG0545 Aryl-hydrocarbon recep 77.9 24 0.00052 31.1 8.9 65 31-97 231-295 (329)
379 PF10579 Rapsyn_N: Rapsyn N-te 77.9 7 0.00015 27.2 4.7 48 582-629 18-67 (80)
380 KOG1308 Hsp70-interacting prot 77.8 1.8 3.8E-05 39.8 2.4 97 112-209 125-221 (377)
381 PF04097 Nic96: Nup93/Nic96; 77.6 1E+02 0.0022 32.7 17.1 63 325-388 112-181 (613)
382 KOG0530 Protein farnesyltransf 77.5 54 0.0012 29.5 17.4 131 4-140 52-186 (318)
383 COG4455 ImpE Protein of avirul 77.4 45 0.00097 29.0 10.1 75 104-178 4-80 (273)
384 PRK10941 hypothetical protein; 77.2 24 0.00052 32.3 9.4 62 74-136 189-250 (269)
385 KOG2066 Vacuolar assembly/sort 77.0 1E+02 0.0023 32.5 27.3 104 107-217 362-467 (846)
386 PF09477 Type_III_YscG: Bacter 76.6 14 0.00031 27.5 6.2 80 44-131 20-99 (116)
387 COG0790 FOG: TPR repeat, SEL1 76.4 68 0.0015 30.0 22.1 151 78-236 53-222 (292)
388 KOG2471 TPR repeat-containing 76.2 24 0.00052 34.6 9.2 67 28-94 238-311 (696)
389 PF13929 mRNA_stabil: mRNA sta 75.3 67 0.0015 29.5 17.0 119 533-651 163-289 (292)
390 PF07575 Nucleopor_Nup85: Nup8 75.1 1.1E+02 0.0025 32.0 19.9 36 20-55 137-173 (566)
391 smart00386 HAT HAT (Half-A-TPR 73.0 10 0.00022 20.6 4.1 25 116-140 2-26 (33)
392 PF07163 Pex26: Pex26 protein; 73.0 46 0.00099 30.2 9.5 90 468-557 87-181 (309)
393 PF09797 NatB_MDM20: N-acetylt 72.7 21 0.00046 34.8 8.6 43 84-127 201-243 (365)
394 PF04190 DUF410: Protein of un 72.6 78 0.0017 29.0 13.5 26 99-124 88-113 (260)
395 KOG4077 Cytochrome c oxidase, 71.7 30 0.00065 26.8 7.0 46 589-634 68-113 (149)
396 PRK10941 hypothetical protein; 71.1 28 0.00061 31.9 8.3 74 105-178 185-259 (269)
397 PRK09687 putative lyase; Provi 70.6 91 0.002 28.9 29.5 137 463-616 141-278 (280)
398 PF09986 DUF2225: Uncharacteri 69.9 42 0.00091 29.5 8.9 93 543-635 86-195 (214)
399 PF14853 Fis1_TPR_C: Fis1 C-te 69.0 15 0.00033 23.5 4.4 23 111-133 11-33 (53)
400 PF00244 14-3-3: 14-3-3 protei 68.6 66 0.0014 28.9 10.0 58 1-58 7-65 (236)
401 PF14689 SPOB_a: Sensor_kinase 68.0 9 0.00019 25.5 3.4 46 586-633 6-51 (62)
402 COG5191 Uncharacterized conser 67.8 15 0.00033 33.5 5.7 80 63-143 104-184 (435)
403 COG4259 Uncharacterized protei 67.3 47 0.001 24.4 6.9 45 14-58 56-100 (121)
404 KOG0128 RNA-binding protein SA 66.9 1.9E+02 0.004 31.1 35.2 88 515-604 442-531 (881)
405 COG5159 RPN6 26S proteasome re 66.7 1E+02 0.0022 28.1 11.5 133 141-301 9-153 (421)
406 PF09477 Type_III_YscG: Bacter 66.6 53 0.0012 24.7 8.9 79 116-200 21-99 (116)
407 PRK12798 chemotaxis protein; R 66.0 1.4E+02 0.003 29.2 21.3 86 44-130 126-214 (421)
408 PF14689 SPOB_a: Sensor_kinase 65.9 19 0.00041 24.0 4.6 46 186-233 6-51 (62)
409 KOG1586 Protein required for f 65.9 96 0.0021 27.4 21.2 18 371-388 166-183 (288)
410 PF12862 Apc5: Anaphase-promot 65.9 43 0.00093 24.7 7.1 19 110-128 50-68 (94)
411 cd08819 CARD_MDA5_2 Caspase ac 65.5 42 0.00091 24.1 6.3 14 149-162 50-63 (88)
412 PF09797 NatB_MDM20: N-acetylt 63.8 1.5E+02 0.0033 28.9 15.3 57 151-208 199-255 (365)
413 PF04097 Nic96: Nup93/Nic96; 63.6 2.1E+02 0.0045 30.5 23.2 25 278-302 116-140 (613)
414 PF09986 DUF2225: Uncharacteri 63.6 71 0.0015 28.1 9.1 23 72-94 171-193 (214)
415 COG0735 Fur Fe2+/Zn2+ uptake r 63.2 54 0.0012 26.7 7.7 63 592-655 8-70 (145)
416 KOG0128 RNA-binding protein SA 62.6 2.2E+02 0.0049 30.6 37.5 133 100-234 112-260 (881)
417 KOG0530 Protein farnesyltransf 62.5 1.2E+02 0.0026 27.4 17.7 174 38-216 51-232 (318)
418 KOG1464 COP9 signalosome, subu 61.8 1.2E+02 0.0027 27.3 23.6 275 321-607 23-339 (440)
419 PF11846 DUF3366: Domain of un 60.8 40 0.00086 29.1 7.1 34 99-132 142-175 (193)
420 PF13929 mRNA_stabil: mRNA sta 60.7 1.4E+02 0.003 27.5 16.3 66 530-595 198-263 (292)
421 KOG0551 Hsp90 co-chaperone CNS 60.4 54 0.0012 30.6 7.7 94 68-161 83-179 (390)
422 KOG4077 Cytochrome c oxidase, 59.9 65 0.0014 25.1 6.8 49 517-565 67-115 (149)
423 KOG0991 Replication factor C, 59.7 1.3E+02 0.0027 26.7 13.2 105 509-617 169-284 (333)
424 COG5191 Uncharacterized conser 59.0 40 0.00086 31.0 6.6 80 97-177 103-183 (435)
425 KOG2908 26S proteasome regulat 56.0 1.8E+02 0.004 27.4 11.6 58 541-598 82-143 (380)
426 KOG3807 Predicted membrane pro 56.0 41 0.00088 31.1 6.3 59 71-129 280-339 (556)
427 TIGR02508 type_III_yscG type I 55.0 86 0.0019 23.3 8.1 14 182-195 51-64 (115)
428 PRK10564 maltose regulon perip 54.8 30 0.00064 31.8 5.3 42 203-244 254-296 (303)
429 cd00280 TRFH Telomeric Repeat 54.3 1.4E+02 0.0029 25.4 8.8 26 277-302 115-140 (200)
430 COG2909 MalT ATP-dependent tra 54.2 3.3E+02 0.0071 29.8 30.5 224 333-559 424-684 (894)
431 PF11846 DUF3366: Domain of un 53.6 67 0.0014 27.8 7.3 31 568-598 142-172 (193)
432 COG4976 Predicted methyltransf 52.7 29 0.00062 30.4 4.5 54 112-165 6-59 (287)
433 KOG0890 Protein kinase of the 52.6 5.5E+02 0.012 31.9 36.9 63 394-459 1670-1732(2382)
434 PF12862 Apc5: Anaphase-promot 52.2 93 0.002 22.9 7.6 18 544-561 51-68 (94)
435 PF10255 Paf67: RNA polymerase 52.0 1.7E+02 0.0036 28.8 10.1 152 7-162 3-191 (404)
436 PF09670 Cas_Cas02710: CRISPR- 52.0 1.9E+02 0.0041 28.4 10.8 59 35-95 136-198 (379)
437 PF11838 ERAP1_C: ERAP1-like C 50.9 2.3E+02 0.0049 27.0 11.8 84 45-131 145-231 (324)
438 KOG1839 Uncharacterized protei 50.8 1.8E+02 0.0039 33.1 11.1 142 21-163 921-1085(1236)
439 PF07575 Nucleopor_Nup85: Nup8 50.8 3.2E+02 0.007 28.7 17.7 26 135-161 149-174 (566)
440 cd08819 CARD_MDA5_2 Caspase ac 50.2 95 0.0021 22.4 6.4 38 113-154 48-85 (88)
441 KOG1839 Uncharacterized protei 49.8 1.1E+02 0.0023 34.7 9.2 116 14-130 957-1086(1236)
442 PF04910 Tcf25: Transcriptiona 49.6 2.6E+02 0.0056 27.2 16.2 29 498-526 39-67 (360)
443 KOG4521 Nuclear pore complex, 49.0 4.5E+02 0.0097 29.9 14.1 81 207-288 985-1069(1480)
444 PF09670 Cas_Cas02710: CRISPR- 48.9 2.4E+02 0.0051 27.7 10.9 56 472-528 139-198 (379)
445 PF05944 Phage_term_smal: Phag 48.5 1.4E+02 0.003 23.8 7.9 33 103-135 50-82 (132)
446 PF10255 Paf67: RNA polymerase 47.6 1.7E+02 0.0036 28.8 9.4 25 608-632 167-191 (404)
447 KOG4279 Serine/threonine prote 47.1 3.9E+02 0.0084 28.6 12.3 106 27-132 198-318 (1226)
448 KOG3807 Predicted membrane pro 46.9 2.5E+02 0.0054 26.3 13.2 17 511-527 287-303 (556)
449 KOG0292 Vesicle coat complex C 46.2 2.3E+02 0.005 30.8 10.4 185 3-237 601-785 (1202)
450 PF04190 DUF410: Protein of un 45.4 2.5E+02 0.0053 25.8 16.7 25 272-296 89-113 (260)
451 PF13762 MNE1: Mitochondrial s 44.7 1.7E+02 0.0037 23.8 10.1 82 537-618 42-128 (145)
452 PRK12323 DNA polymerase III su 44.6 3.7E+02 0.0079 28.7 11.6 54 3-58 170-231 (700)
453 KOG0686 COP9 signalosome, subu 44.5 3.1E+02 0.0068 26.8 14.9 61 326-387 152-215 (466)
454 PF13762 MNE1: Mitochondrial s 44.5 1.7E+02 0.0037 23.8 9.5 82 572-653 41-128 (145)
455 KOG4521 Nuclear pore complex, 44.3 5.3E+02 0.011 29.4 15.7 167 278-451 925-1124(1480)
456 KOG4279 Serine/threonine prote 44.2 4.3E+02 0.0093 28.3 14.2 181 450-635 184-396 (1226)
457 KOG0686 COP9 signalosome, subu 44.2 3.2E+02 0.0069 26.7 14.0 62 396-457 152-215 (466)
458 KOG3824 Huntingtin interacting 44.0 49 0.0011 30.3 4.8 54 112-165 127-180 (472)
459 KOG2034 Vacuolar sorting prote 43.5 4.8E+02 0.01 28.6 27.0 55 106-163 363-417 (911)
460 KOG2422 Uncharacterized conser 42.9 4E+02 0.0086 27.5 16.6 120 42-161 250-404 (665)
461 KOG0687 26S proteasome regulat 42.3 3E+02 0.0065 25.9 14.4 134 495-632 66-208 (393)
462 PF11817 Foie-gras_1: Foie gra 42.1 70 0.0015 29.0 5.9 64 32-95 180-247 (247)
463 PRK10564 maltose regulon perip 42.0 65 0.0014 29.8 5.4 43 321-363 253-296 (303)
464 COG4941 Predicted RNA polymera 41.3 3.2E+02 0.0069 25.9 11.7 33 8-41 209-241 (415)
465 PRK09462 fur ferric uptake reg 41.3 2E+02 0.0043 23.5 7.9 35 586-620 33-67 (148)
466 PRK12798 chemotaxis protein; R 40.9 3.7E+02 0.0079 26.5 22.6 195 441-639 124-329 (421)
467 PF11848 DUF3368: Domain of un 40.8 89 0.0019 19.4 5.2 29 583-611 15-43 (48)
468 PF08311 Mad3_BUB1_I: Mad3/BUB 40.7 1.8E+02 0.0039 22.9 9.6 87 39-127 35-125 (126)
469 PF03745 DUF309: Domain of unk 40.3 1.1E+02 0.0024 20.4 5.2 48 181-228 10-62 (62)
470 cd02680 MIT_calpain7_2 MIT: do 40.3 61 0.0013 22.7 3.9 17 78-94 18-34 (75)
471 COG0735 Fur Fe2+/Zn2+ uptake r 40.1 1.7E+02 0.0037 23.8 7.2 23 142-164 27-49 (145)
472 PF15297 CKAP2_C: Cytoskeleton 39.7 3E+02 0.0065 26.3 9.2 64 185-250 118-185 (353)
473 KOG3824 Huntingtin interacting 39.6 86 0.0019 28.9 5.7 60 77-137 127-186 (472)
474 PF14669 Asp_Glu_race_2: Putat 39.5 2.5E+02 0.0053 24.1 14.9 23 576-598 138-160 (233)
475 KOG3364 Membrane protein invol 38.8 2E+02 0.0044 23.0 10.3 69 497-565 30-102 (149)
476 PRK11639 zinc uptake transcrip 38.7 2.2E+02 0.0047 24.0 7.8 48 575-622 30-77 (169)
477 TIGR02508 type_III_yscG type I 38.5 1.7E+02 0.0036 21.9 8.6 53 331-389 46-98 (115)
478 PF11663 Toxin_YhaV: Toxin wit 38.1 46 0.001 26.3 3.3 31 582-614 107-137 (140)
479 KOG2659 LisH motif-containing 37.1 3E+02 0.0065 24.4 8.7 100 566-665 22-128 (228)
480 KOG0551 Hsp90 co-chaperone CNS 37.0 2.7E+02 0.0058 26.4 8.3 95 536-632 83-180 (390)
481 KOG2168 Cullins [Cell cycle co 37.0 5.9E+02 0.013 27.8 21.6 18 335-352 479-496 (835)
482 PF10475 DUF2450: Protein of u 35.8 2.8E+02 0.006 26.0 8.9 157 30-195 60-222 (291)
483 PF11663 Toxin_YhaV: Toxin wit 35.4 49 0.0011 26.2 3.1 22 79-100 108-129 (140)
484 PF13934 ELYS: Nuclear pore co 35.4 3.3E+02 0.0071 24.4 14.2 98 110-217 87-184 (226)
485 PF07720 TPR_3: Tetratricopept 35.1 92 0.002 17.9 3.7 17 36-52 7-23 (36)
486 smart00777 Mad3_BUB1_I Mad3/BU 35.1 2.3E+02 0.0049 22.4 9.0 43 622-664 80-123 (125)
487 KOG4567 GTPase-activating prot 34.3 3.1E+02 0.0067 25.6 8.2 44 519-562 263-306 (370)
488 COG5187 RPN7 26S proteasome re 34.0 3.8E+02 0.0083 24.7 11.8 95 534-632 115-219 (412)
489 PF13934 ELYS: Nuclear pore co 33.0 3.6E+02 0.0078 24.1 13.2 103 69-181 79-183 (226)
490 PF10366 Vps39_1: Vacuolar sor 32.3 2.3E+02 0.005 21.6 7.6 26 573-598 42-67 (108)
491 PRK13184 pknD serine/threonine 32.3 7.8E+02 0.017 27.8 27.2 333 275-633 477-868 (932)
492 PF09454 Vps23_core: Vps23 cor 31.8 1.1E+02 0.0023 20.7 3.9 46 101-146 8-53 (65)
493 PRK14956 DNA polymerase III su 31.2 5.9E+02 0.013 26.0 11.9 118 3-145 167-292 (484)
494 PF13838 Clathrin_H_link: Clat 31.2 1.7E+02 0.0037 19.9 5.3 43 29-73 5-47 (66)
495 COG2912 Uncharacterized conser 31.1 2.2E+02 0.0047 26.1 6.8 54 144-198 190-243 (269)
496 cd00280 TRFH Telomeric Repeat 30.9 3.4E+02 0.0074 23.2 11.6 21 143-163 119-139 (200)
497 smart00804 TAP_C C-terminal do 30.5 60 0.0013 21.7 2.5 31 37-67 31-62 (63)
498 PF01475 FUR: Ferric uptake re 30.1 55 0.0012 25.5 2.8 44 1-44 13-56 (120)
499 PF14929 TAF1_subA: TAF RNA Po 30.0 6.6E+02 0.014 26.2 14.9 14 118-131 361-374 (547)
500 cd07153 Fur_like Ferric uptake 28.8 1.7E+02 0.0036 22.5 5.3 47 576-622 6-52 (116)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-74 Score=616.76 Aligned_cols=628 Identities=19% Similarity=0.221 Sum_probs=406.2
Q ss_pred hhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCC--------------------
Q 038606 3 SILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLC-------------------- 62 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------- 62 (666)
+.+.+.|++++|..+++++...|.+++..+|..+++.+...+..+.|.+++..+.+.+..
T Consensus 59 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~ 138 (857)
T PLN03077 59 RALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV 138 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChH
Confidence 456677777777777777777666666666655555555555555555555544444320
Q ss_pred ----------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 63 ----------VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 63 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
+||..+|+.++.+|.+.|++++|..+|++|...|+.||..+|+.++.++...+++..+.+++..+.+.+.
T Consensus 139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 2444455555555555555555555555555555555555555555555555555555555555544443
Q ss_pred -CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 038606 133 -VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVI 211 (666)
Q Consensus 133 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (666)
.+..+++.++.+|.+.|++++|.++|++|.. +|..+|+.++.+|.+.|++++|+++|++|.+.|+.||..+|+.+
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 2344555666666666666666666666543 35555666666666666666666666666666666666666666
Q ss_pred HHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHH
Q 038606 212 IGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQ 291 (666)
Q Consensus 212 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (666)
+.+|.+.|+.+.|.+++..|.+.|+.||..+++.++..|++.|+.+.+.+.+.... .++..+|+.++.+|.+.|++++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~ 372 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDK 372 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHH
Confidence 66666666666666666666666666666666666666666666654444444332 2344556666666666666666
Q ss_pred HHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 038606 292 AYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCN 371 (666)
Q Consensus 292 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 371 (666)
|.++|+.|...+ +.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+.+|++
T Consensus 373 A~~lf~~M~~~g----------------~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 373 ALETYALMEQDN----------------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHHhC----------------CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 666666665544 3566666666666666666666666666666666666666666666666666
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 038606 372 SNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRF 451 (666)
Q Consensus 372 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 451 (666)
.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|..+|++|.. +..|+..++..++.+|++.|..+.+.++
T Consensus 437 ~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 437 CKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred cCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 6666666666666543 3555666666666666666666666666654 3566666666666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC
Q 038606 452 LTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLI 531 (666)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 531 (666)
+..+.+.|+.++..+++.++.+|.+.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 666666666666666667777777777777777777665 467777888888888888888888888888877888
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 038606 532 PSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMAL 611 (666)
Q Consensus 532 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 611 (666)
||..||+.++.+|.+.|++++|.++|+.|.+..+..|+..+|+.++++|++.|++++|.+++++|. ++||..+|++|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 888888888888888888888888888887555557787888888888888888888888877773 57788888888
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHhhC
Q 038606 612 ITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEVLKEM 666 (666)
Q Consensus 612 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 666 (666)
+.+|..+|+.+.+....+++.+.. |.+...|..+.+.|...|+|++|.++.+.|
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 888877777777777777777653 445677777778888888888888887765
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-74 Score=614.16 Aligned_cols=596 Identities=17% Similarity=0.233 Sum_probs=561.0
Q ss_pred hhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCCh
Q 038606 3 SILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSV 82 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (666)
+.+.+.|+...|.++++++.. ++..+|+.++.+|.+.|++++|.++|++|...+. .||..||+.++.++...+++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~-~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV-RPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHhCCccch
Confidence 456788999999999988864 5788999999999999999999999999998875 89999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 83 DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 83 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
..+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|+++... +..+|+.++.+|.+.|++++|.++|++|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~---d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC---CcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764 66789999999999999999999999999
Q ss_pred hCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHH
Q 038606 163 DCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEI 242 (666)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 242 (666)
+.|+.||..+|+.++.++.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s 356 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVS 356 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996 478999
Q ss_pred HHHHHHhhhccCcHHHHHHHHHh--hCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCC
Q 038606 243 LSKLITSCSDEGELTLLVKEIWE--DRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTV 320 (666)
Q Consensus 243 ~~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (666)
|+.++.+|.+.|+.+++++.+.. ..+..|+..+++.++.++.+.|+++.|.++++.+.+.+ +
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g----------------~ 420 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG----------------L 420 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC----------------C
Confidence 99999999999999977666554 35677889999999999999999999999999999887 4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 038606 321 SPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSM 400 (666)
Q Consensus 321 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 400 (666)
.++..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|+.++|.++|++|.. ++.||..+|+.+
T Consensus 421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 89999999999999999999999999999975 7889999999999999999999999999986 589999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCCh
Q 038606 401 FRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRV 480 (666)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 480 (666)
+.+|++.|+++.+.+++..+.+.|..++..+++.++..|++.|+.++|..+|+.+ .+|..+|+.++.+|++.|+.
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~ 570 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKG 570 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 57999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 038606 481 DLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMI-TKGLIPSVATYNLLINGWCKSGNIDQAMLCLSR 559 (666)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (666)
++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|+.++.+|++.|++++|.+++++
T Consensus 571 ~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 571 SMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 679999999999999999999999999999999
Q ss_pred HHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 038606 560 MLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAP-NRITFMALITGLCKCDRPRAALVHFRMMKEKGMKP 638 (666)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 638 (666)
|. ..||..+|++|+.+|...|+.+.+....+++.+. .| +...|..+...|...|++++|.++.+.|.+.|+++
T Consensus 651 m~----~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l--~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 651 MP----ITPDPAVWGALLNACRIHRHVELGELAAQHIFEL--DPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred CC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 83 3799999999999999999999999999998875 44 56677778899999999999999999999999998
Q ss_pred CHHH
Q 038606 639 DMFV 642 (666)
Q Consensus 639 ~~~~ 642 (666)
++..
T Consensus 725 ~~g~ 728 (857)
T PLN03077 725 DPGC 728 (857)
T ss_pred CCCc
Confidence 8643
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-66 Score=541.37 Aligned_cols=526 Identities=15% Similarity=0.271 Sum_probs=427.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGW-GYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSIL 141 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 141 (666)
.++...|..+...+++.|++++|.++|+.|.+.|+ .++..++..++..|.+.|..++|..+|+.+.. .+..+|+.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~L 443 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNML 443 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHH
Confidence 46777888888888888888888888888888775 35666677778888888888888888887765 367788888
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCCh
Q 038606 142 LVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQL 221 (666)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 221 (666)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 222 EMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
++|.++|++|.+.|+.||. .+|+.++.+|++.|++++|.++|+.|..
T Consensus 524 eeAl~lf~~M~~~Gv~PD~---------------------------------vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDR---------------------------------VVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCH---------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888887 5666677777777888888888888865
Q ss_pred CCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038606 302 GEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYEL 381 (666)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 381 (666)
.+ .++.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.|++++|.++
T Consensus 571 ~~--------------~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 571 ET--------------HPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred hc--------------CCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 21 1147788888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038606 382 LREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFL 461 (666)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 461 (666)
|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~ 716 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR 716 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038606 462 PDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLI 541 (666)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (666)
||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..+|+.++
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLI 796 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred HHHHc----c-------------------CChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 542 NGWCK----S-------------------GNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 542 ~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
..|.+ + +..++|..+|++|.+.+. .||..+|+.++.++...+....+..+++.|..
T Consensus 797 glc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi-~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 797 GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT-LPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 65431 1 123568888888887776 78888888888777777777888888887777
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 038606 599 KGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMF 641 (666)
Q Consensus 599 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 641 (666)
.+..|+..+|+.+|.++.+. .++|..++++|.+.|+.|+..
T Consensus 876 ~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 876 SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77777888888888877322 357888888888888887753
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.3e-66 Score=539.63 Aligned_cols=526 Identities=20% Similarity=0.305 Sum_probs=484.5
Q ss_pred hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH
Q 038606 25 RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL 104 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 104 (666)
+.+.+...|..+...+.+.|++++|+++|+.|.+.+..+++..++..++..|.+.|.+++|..+|+.|.. ||..+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 3444567788888999999999999999999999987678888899999999999999999999999964 899999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCC-CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGW-VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (666)
+.++.+|++.|+++.|.++|+.+.+.+. .+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999886 467899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHhhhccCcHHHHHH
Q 038606 184 SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG--SGITPDFEILSKLITSCSDEGELTLLVK 261 (666)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 261 (666)
|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~--------------------- 579 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH--------------------- 579 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH---------------------
Confidence 99999999999999999999999999999999999999999999999986 6788998
Q ss_pred HHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChH
Q 038606 262 EIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLD 341 (666)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 341 (666)
.+|+.++.+|++.|++++|.++|+.|.+.+ ++|+..+|+.++.+|++.|+++
T Consensus 580 ------------vTynaLI~ay~k~G~ldeA~elf~~M~e~g----------------i~p~~~tynsLI~ay~k~G~~d 631 (1060)
T PLN03218 580 ------------ITVGALMKACANAGQVDRAKEVYQMIHEYN----------------IKGTPEVYTIAVNSCSQKGDWD 631 (1060)
T ss_pred ------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----------------CCCChHHHHHHHHHHHhcCCHH
Confidence 667777888889999999999999999877 4899999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038606 342 LALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMR 421 (666)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (666)
+|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 632 eAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHH
Q 038606 422 VQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVA 501 (666)
Q Consensus 422 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (666)
..+..|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|+++.|.+++.+|.+.|+.||..+
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 038606 502 YNIIISGLCK----A-------------------QRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLS 558 (666)
Q Consensus 502 ~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (666)
|+.++..|.+ . +..++|..+|++|.+.|+.||..+|+.++.++.+.+....+..+++
T Consensus 792 ynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 792 CRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 9999866432 1 2246799999999999999999999999988888899999999998
Q ss_pred HHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 038606 559 RMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRI 606 (666)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 606 (666)
.+...+. .|+..+|+++++++.+. .++|..++++|.+.|+.|+..
T Consensus 872 ~m~~~~~-~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 872 NLGISAD-SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhccCCC-CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8866554 78999999999998432 468999999999999999865
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-59 Score=490.06 Aligned_cols=512 Identities=16% Similarity=0.230 Sum_probs=440.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCchHHHHH
Q 038606 64 PNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG-WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW-VDEHVFSIL 141 (666)
Q Consensus 64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 141 (666)
++..+|+.++..+.+.|++++|.++|+.|...+ ..||..+|+.++.++.+.++++.|.+++..+.+.+. .+..+++.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 455677777777777777777777777776653 456777777777777777777777777777776654 355677777
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCCh
Q 038606 142 LVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQL 221 (666)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 221 (666)
+.+|.+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++...|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 7777777777778888877754 578899999999999999999999999999988899999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 222 EMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
+.+.+++..+.+.|+.||. .+++.++.+|.+.|++++|.++|+.|.
T Consensus 241 ~~~~~l~~~~~~~g~~~d~---------------------------------~~~n~Li~~y~k~g~~~~A~~vf~~m~- 286 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDT---------------------------------FVSCALIDMYSKCGDIEDARCVFDGMP- 286 (697)
T ss_pred HHHHHHHHHHHHhCCCccc---------------------------------eeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 9999999999998888887 778888888999999999999998885
Q ss_pred CCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038606 302 GEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYEL 381 (666)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 381 (666)
++|..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 287 -------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 287 -------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred -------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038606 382 LREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFL 461 (666)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 461 (666)
+..|.+.|+.||..+++.++.+|++.|++++|.++|++|. .++..+|+.++.+|++.|+.++|.++|++|.+.|+.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999986 468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038606 462 PDIVCYSAAIGGLIDIKRVDLALELFRDICA-HGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLL 540 (666)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 540 (666)
||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+++
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~L 500 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAAL 500 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 9999999999999999999999999999985 689999999999999999999999999998876 578999999999
Q ss_pred HHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHH---HHHH
Q 038606 541 INGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNR-ITFMALI---TGLC 616 (666)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~---~~~~ 616 (666)
+.+|...|+++.|..+++++.+..+ .+..+|..|+++|++.|++++|.++++.|.+.|+...+ .+|..+. ..+.
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p--~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGP--EKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCC--CCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEc
Confidence 9999999999999999999987655 45678999999999999999999999999999876432 2221110 0000
Q ss_pred ----cc----CChhHHHHHHHHHHHcCCCCCHH
Q 038606 617 ----KC----DRPRAALVHFRMMKEKGMKPDMF 641 (666)
Q Consensus 617 ----~~----g~~~~A~~~~~~~~~~~~~~~~~ 641 (666)
.+ .-++...++..+|.+.|..|+..
T Consensus 579 ~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 579 SGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 01 11345566777888889888743
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.4e-59 Score=486.89 Aligned_cols=473 Identities=20% Similarity=0.253 Sum_probs=443.8
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHH
Q 038606 98 GYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW--VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCV 175 (666)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 175 (666)
..+..+|+.++..|.+.|++++|.++|+.+...++ .+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34667899999999999999999999999987653 4678999999999999999999999999999999999999999
Q ss_pred HHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCc
Q 038606 176 LIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGE 255 (666)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 255 (666)
++.+|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~--------------- 224 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP--------------- 224 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh---------------
Confidence 9999999999999999999998 589999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 038606 256 LTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLL 335 (666)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 335 (666)
.++..++.++...|..+.+.+++..+.+.+ +.+|..+++.++.+|+
T Consensus 225 ------------------~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g----------------~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 225 ------------------RTFVVMLRASAGLGSARAGQQLHCCVLKTG----------------VVGDTFVSCALIDMYS 270 (697)
T ss_pred ------------------hhHHHHHHHHhcCCcHHHHHHHHHHHHHhC----------------CCccceeHHHHHHHHH
Confidence 555566666777788888999998888776 4899999999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038606 336 KDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALN 415 (666)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 415 (666)
+.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+
T Consensus 271 k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 271 KCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 99999999999999974 79999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 038606 416 LVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGC 495 (666)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 495 (666)
++..+.+.|.+++..+++.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~ 422 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999864 6899999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHH
Q 038606 496 CPDVVAYNIIISGLCKAQRVAEAEDLFNEMIT-KGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYT 574 (666)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 574 (666)
.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. ..|+..+|+
T Consensus 423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~p~~~~~~ 498 (697)
T PLN03081 423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP----FKPTVNMWA 498 (697)
T ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----CCCCHHHHH
Confidence 99999999999999999999999999999986 5999999999999999999999999999998763 369999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 038606 575 TLIDGLCIAGRPDDAIMLWNEMEEKGCAP-NRITFMALITGLCKCDRPRAALVHFRMMKEKGMK 637 (666)
Q Consensus 575 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 637 (666)
+|+.+|...|+++.|..+++++.+. .| +..+|..++..|.+.|++++|.++++.|.+.|++
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999999999999999999999764 45 4779999999999999999999999999999875
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-41 Score=375.02 Aligned_cols=624 Identities=13% Similarity=0.072 Sum_probs=460.3
Q ss_pred HhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038606 7 RARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVE 86 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (666)
+.|+++.|...++.+....+. ....+..++.++...|++++|...|+.+.+.. |.+...+..++..+.+.|++++|.
T Consensus 273 ~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~ 349 (899)
T TIGR02917 273 QKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAI 349 (899)
T ss_pred HhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 344445555555444443321 23334444555555556666666665555554 444555555666666666666666
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 038606 87 MRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI 166 (666)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (666)
..++++.+.++. +...+..+...+.+.|++++|.+.|+++...+|.+...+..++..+...|++++|.+.++++.+.++
T Consensus 350 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 428 (899)
T TIGR02917 350 ATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428 (899)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC
Confidence 666666554332 4555556666666666666666666666666665556666666666666666666666666665542
Q ss_pred CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 038606 167 RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKL 246 (666)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (666)
. .......++..+.+.|++++|.++++.+.... +++..+|..++..+...|++++|.+.|+++.+.. ..+...+..+
T Consensus 429 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 505 (899)
T TIGR02917 429 E-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANL 505 (899)
T ss_pred c-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHH
Confidence 2 23344445556666777777777777666543 4556667777777777777777777777776643 2234455556
Q ss_pred HHhhhccCcHHHHHHHHHhhCCCC-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHH
Q 038606 247 ITSCSDEGELTLLVKEIWEDRDVN-TMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTS 325 (666)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (666)
...+...|+.+.+...+....... .+...+..+...+.+.|+.++|..+++++.... +.+..
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~ 568 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-----------------PQEIE 568 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------ccchh
Confidence 666666777765555544433222 234566667777777777777777777776655 66777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038606 326 SFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLC 405 (666)
Q Consensus 326 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (666)
.+..++..+...|++++|..+++.+.+.. +.+...|..+...+...|++++|...|+.+.+.. +.+...+..+..++.
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA 646 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 78888899999999999999999988754 5678888999999999999999999999988764 446777888888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 038606 406 RRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALE 485 (666)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 485 (666)
..|++++|..+++++.... +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+
T Consensus 647 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988764 5567788888899999999999999999998875 4567778888889999999999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC
Q 038606 486 LFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
.|+.+...+ |+..++..++..+.+.|++++|...++++.+.. +.+...+..+...|...|++++|..+|+++.+..+
T Consensus 725 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 725 AYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 999998864 445677788889999999999999999998863 44677888899999999999999999999998876
Q ss_pred CCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 038606 566 GSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVA 645 (666)
Q Consensus 566 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 645 (666)
.+...++.+...+...|+ .+|+..++++.+.. +.++.++..+...+...|++++|..+++++.+.+ +.+..++..
T Consensus 802 --~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~ 876 (899)
T TIGR02917 802 --DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYH 876 (899)
T ss_pred --CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHH
Confidence 677889999999999999 88999999998852 4457778888999999999999999999999876 568999999
Q ss_pred HHHHHHhcCChhhHHHHHhhC
Q 038606 646 LISAFLSELNPPLAFEVLKEM 666 (666)
Q Consensus 646 l~~~~~~~g~~~~A~~~~~~m 666 (666)
++.++.+.|++++|.+++++|
T Consensus 877 l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 877 LALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999886
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-40 Score=368.73 Aligned_cols=627 Identities=12% Similarity=0.058 Sum_probs=299.8
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
++.+.|+++.|+..++.+.... |.++..+..++..+...|++++|.++++++.+.+ |++...+..++..+...|+++
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~ 210 (899)
T TIGR02917 134 AYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIE 210 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHH
Confidence 3444555666666665555433 2344555555555555666666666665555544 445555555555555555666
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
+|...|+++.+.++. +..++..++..+...|++++|...++.+.+..|.++..+...+..+...|++++|...|+++.+
T Consensus 211 ~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 289 (899)
T TIGR02917 211 LALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289 (899)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 665555555554332 4444445555555555555555555555544444444433334444444444444444444443
Q ss_pred CCC---------------------------------CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 038606 164 CNI---------------------------------RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDV 210 (666)
Q Consensus 164 ~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (666)
.++ +.+...+..+...+.+.|++++|...++.+.+.. +.+...+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 368 (899)
T TIGR02917 290 SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSL 368 (899)
T ss_pred hCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 321 1223333344444445555555555555544433 334444555
Q ss_pred HHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCC-ccchHHHHHHHHHhcCCH
Q 038606 211 IIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNT-MTLLCNSIMRILVSNGSI 289 (666)
Q Consensus 211 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 289 (666)
+...+.+.|++++|.++|+++.+... .+...+..+...+...|+.+.+...+.......+ .......++..+.+.|++
T Consensus 369 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 447 (899)
T TIGR02917 369 LGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQF 447 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCH
Confidence 55555555555555555555544321 1223333333344444444433333322221111 112222333334444444
Q ss_pred HHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038606 290 DQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGL 369 (666)
Q Consensus 290 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 369 (666)
++|.++++.+.... +++...+..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 448 ~~A~~~~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 509 (899)
T TIGR02917 448 DKALAAAKKLEKKQ-----------------PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID 509 (899)
T ss_pred HHHHHHHHHHHHhC-----------------CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Confidence 44444444443332 3444455555555555555555555555554433 23334444444455
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------------------
Q 038606 370 CNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQG------------------------- 424 (666)
Q Consensus 370 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------- 424 (666)
...|++++|.+.++++.+.+ +.+..++..+...+.+.|+.++|...++++...+
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 55555555555555554432 2234444444444444444444444444444332
Q ss_pred --------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 038606 425 --------HEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCC 496 (666)
Q Consensus 425 --------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 496 (666)
.+.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...|+++.+.. +
T Consensus 589 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 12333444444444455555555555555444432 2233344444444444555555555555544432 3
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHH
Q 038606 497 PDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTL 576 (666)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 576 (666)
.+..++..++..+...|++++|..+++.+.+.+ +++...+..+...+...|++++|.+.|+++....+ +..++..+
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l 742 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP---SSQNAIKL 742 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CchHHHHH
Confidence 334444444555555555555555555554442 22344444455555555555555555555554432 22344445
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038606 577 IDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNP 656 (666)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 656 (666)
+.++...|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+.. ++++.++..++..+...|+
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~- 819 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD- 819 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-
Confidence 555555555555555555555432 3345555555555555555555555555555543 4445555555555555555
Q ss_pred hhHHHHHh
Q 038606 657 PLAFEVLK 664 (666)
Q Consensus 657 ~~A~~~~~ 664 (666)
++|..+++
T Consensus 820 ~~A~~~~~ 827 (899)
T TIGR02917 820 PRALEYAE 827 (899)
T ss_pred HHHHHHHH
Confidence 55555554
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.9e-32 Score=299.23 Aligned_cols=629 Identities=14% Similarity=0.035 Sum_probs=464.9
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhH------------
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSY------------ 69 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------ 69 (666)
+++-.+.++.+.|++.++.+.... |.+++++..+++.+...|+.++|.+.++++.+.. |.+...+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCc
Confidence 567788899999999999999865 4489999999999999999999999999999987 5555443
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 70 ----NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL-LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 70 ----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
..++..+...|++++|.+.|+++.+.+++ +......+ .......|++++|++.++++....|.++.++..++..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~l 190 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALL 190 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33455788999999999999999986544 32211112 2222345999999999999999999999999999999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcc-------------------hhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccH
Q 038606 145 FSKWGEVDKACELIERMDDCNIRLN-------------------EKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDA 205 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 205 (666)
+...|+.++|++.++++........ ...+...+..+-.....+.|...++........|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999999876421100 001111122222222344455555544332212222
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccc---hH------
Q 038606 206 AMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTL---LC------ 276 (666)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------ 276 (666)
. .......+...|++++|...|++..+... .+..++..+...+.+.|+.+.+...+.+.....++.. .|
T Consensus 271 ~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 R-ARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 1 12335556677888888888877776421 2556666777777777777766665554443322211 11
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038606 277 ------NSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREM 350 (666)
Q Consensus 277 ------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 350 (666)
......+.+.|++++|...|+++.... |.+...+..+...+...|++++|++.|+++
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----------------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-----------------NTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 233556788999999999999999886 677888888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 351 TQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFK--------PTHFTLNSMFRCLCRRQDVVGALNLVRKMRV 422 (666)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (666)
.+.. +.+...+..+...+. .++.++|..+++.+...... .....+..+...+...|++++|+..++++.+
T Consensus 412 L~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 412 LRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9875 455667777777764 46789999888765432100 0122345567788899999999999999998
Q ss_pred cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHH--
Q 038606 423 QGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVV-- 500 (666)
Q Consensus 423 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 500 (666)
.. +.+...+..+...|.+.|++++|...++++.+.. +.++..+..+...+...+++++|...++.+......++..
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l 567 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQEL 567 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHH
Confidence 75 4466677888999999999999999999998763 2345555555556678899999999998765432222221
Q ss_pred -------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhH
Q 038606 501 -------AYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITY 573 (666)
Q Consensus 501 -------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 573 (666)
.+......+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+..| .+...+
T Consensus 568 ~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P--~~~~a~ 640 (1157)
T PRK11447 568 AQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP--GNADAR 640 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH
Confidence 123456678889999999999872 244666778889999999999999999999999876 567788
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--CC---CHHHHHHHHH
Q 038606 574 TTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGM--KP---DMFVFVALIS 648 (666)
Q Consensus 574 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~ 648 (666)
..++.++...|++++|++.++.+.+.. +.+...+..+..++...|++++|.++++++....- +| +...+..++.
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence 899999999999999999999988742 33466677788889999999999999999987431 22 2356777899
Q ss_pred HHHhcCChhhHHHHHhh
Q 038606 649 AFLSELNPPLAFEVLKE 665 (666)
Q Consensus 649 ~~~~~g~~~~A~~~~~~ 665 (666)
.+...|++++|...+++
T Consensus 720 ~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 720 FEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999999875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.4e-29 Score=278.16 Aligned_cols=615 Identities=12% Similarity=0.035 Sum_probs=452.3
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH-----
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL----- 104 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----- 104 (666)
...+...++.....++.+.|.+.++++.... |.|+.++..++..+.+.|+.++|.+.++++.+..+. +....
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~ 104 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 3347778899999999999999999999988 788999999999999999999999999999997654 33322
Q ss_pred -----------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchH-HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhh
Q 038606 105 -----------TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHV-FSILLVAFSKWGEVDKACELIERMDDCNIRLNEKT 172 (666)
Q Consensus 105 -----------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (666)
..+...+...|++++|++.|+++.+.+|.+... ...+.......|+.++|++.|+++.+.. +.+...
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHH
Confidence 334456888999999999999999987766432 2222233345699999999999999986 346777
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc--HHH-----------------HHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 173 FCVLIHGFVKKSRVDKALQLFDKMTKSGFASD--AAM-----------------YDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~-----------------~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
+..+...+...|++++|+..++++.+...... ... +...+..+-.....+.|...+.++..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88899999999999999999999876421000 111 11112222222234455566655544
Q ss_pred CCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHH
Q 038606 234 SGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNT-MTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEM 312 (666)
Q Consensus 234 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 312 (666)
....|+... ...-..+...|+.+.+...+.......| +..++..+..++.+.|++++|+..|++..+..+...... .
T Consensus 264 ~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~-~ 341 (1157)
T PRK11447 264 QLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD-K 341 (1157)
T ss_pred hccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh-H
Confidence 333344322 1223456678888877777766555444 567888999999999999999999999988653210000 0
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 038606 313 LMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKP 392 (666)
Q Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 392 (666)
+...- ..............+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.
T Consensus 342 ~~~ll--~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~ 417 (1157)
T PRK11447 342 WESLL--KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PG 417 (1157)
T ss_pred HHHHH--HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 00000 00000011223556789999999999999999876 4567788889999999999999999999998863 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 038606 393 THFTLNSMFRCLCRRQDVVGALNLVRKMRVQGH--------EPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDI 464 (666)
Q Consensus 393 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 464 (666)
+...+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|+..+++..+.. +-+.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 5666777777664 4678999988876543210 0112234556778889999999999999999874 3356
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH---------
Q 038606 465 VCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVA--------- 535 (666)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--------- 535 (666)
..+..+...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+......++..
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 777888899999999999999999998753 4455555555566778899999999998865432222211
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038606 536 TYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGL 615 (666)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 615 (666)
.+..+...+...|+.++|..+++. .+ .+...+..+...+...|++++|++.|+++.+.. +.+...+..++..+
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~----~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~ 647 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQ----QP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVD 647 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh----CC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 223456778899999999999872 23 455667889999999999999999999999863 44688899999999
Q ss_pred HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHhh
Q 038606 616 CKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 616 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (666)
...|++++|++.++.+.+.. +.+...+..++.++...|++++|.+++++
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999988653 44577888899999999999999999876
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=1.8e-27 Score=248.57 Aligned_cols=624 Identities=12% Similarity=0.005 Sum_probs=421.7
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
.+...|++++|+..++.++...+. ++.++..+++.|...|++++|+..++++.+.+ |.|...+..+. .+ ++++
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La-~i---~~~~ 125 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLA-AI---PVEV 125 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHH-Hh---ccCh
Confidence 444558999999999999886655 58899999999999999999999999999886 44444444442 22 8899
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCC-Cch-HHHHHHHHHHhcCChhh
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQV--------YCNSGQFDKALSVFNEIIDHGWV-DEH-VFSILLVAFSKWGEVDK 153 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~ 153 (666)
+|..+|+++.+..+. +..++..+... |.+.++..++ ++ .....+. ++. ....+..+|.+.|++++
T Consensus 126 kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~A---L~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 126 KSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQ---LN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred hHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHH---HH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 999999999988665 56666655555 6555444444 44 2222222 233 44555889999999999
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHhhhc-cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 154 ACELIERMDDCNIRLNEKTFCVLIHGFVK-KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 154 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
|++++.++.+.++ .+......+..+|.. .++ +.+..++... ++.|...+..++..|.+.|+.++|.++++++.
T Consensus 201 Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~ 274 (987)
T PRK09782 201 ADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENK 274 (987)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 9999999998863 355556667777777 366 7777775532 24678888899999999999999999999987
Q ss_pred hCCCC-CCHHHHHHHHHhhhccCcHH--HHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----
Q 038606 233 GSGIT-PDFEILSKLITSCSDEGELT--LLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPI---- 305 (666)
Q Consensus 233 ~~~~~-~~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---- 305 (666)
..... |+..++.-.+.-+....... .....+.. .....+..++..+.+.+.++.+.++.. .....+.
T Consensus 275 ~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r 348 (987)
T PRK09782 275 PLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD-----NRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANEMLEER 348 (987)
T ss_pred ccccCCCccHHHHHHHHhccCchhhhccchhhhhHH-----HHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcchHHHHH
Confidence 64333 66655555554444331111 00000000 001122233455555555554444421 1100000
Q ss_pred ---------CchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC
Q 038606 306 ---------ADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQI-G-CMQNVFLYNNLIDGLCNSNR 374 (666)
Q Consensus 306 ---------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~ 374 (666)
.......+...-...+.+......+.....+.|+.++|..+|+..... + ...+.....-++..|.+.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 000000000011112556667777777788899999999999988762 1 12344455567777777655
Q ss_pred ---hhHHHHH-------------------------HHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038606 375 ---LEESYEL-------------------------LREMEESGFKP--THFTLNSMFRCLCRRQDVVGALNLVRKMRVQG 424 (666)
Q Consensus 375 ---~~~a~~~-------------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 424 (666)
..++..+ +..+... .++ +...+..+..++.. ++.++|...+.+.....
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 3333222 1111111 133 56677777777766 78888998887777653
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHH
Q 038606 425 HEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNI 504 (666)
Q Consensus 425 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 504 (666)
|+......+...+...|++++|...++++... +|+...+..+...+.+.|+++.|...+++..+.. +++...+..
T Consensus 507 --Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~ 581 (987)
T PRK09782 507 --PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWW 581 (987)
T ss_pred --CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHH
Confidence 44333334455556889999999999987665 4455556666777888999999999999888764 333334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcC
Q 038606 505 IISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAG 584 (666)
Q Consensus 505 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 584 (666)
+.....+.|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++.....| .+...++.+..++...|
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P--d~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP--NNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCC
Confidence 444455669999999999999875 46777888888899999999999999999998876 55667888888899999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHh
Q 038606 585 RPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEVLK 664 (666)
Q Consensus 585 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (666)
++++|+..+++..+.. +-+...+..+..++...|++++|+..+++..+.. +-+..+....++...+..+++.|.+-++
T Consensus 658 ~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 658 DIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999988852 3457788889999999999999999999998664 4445777788888888888888877654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2e-26 Score=240.87 Aligned_cols=594 Identities=14% Similarity=0.006 Sum_probs=418.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 038606 34 GFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN 113 (666)
Q Consensus 34 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (666)
...+..+...|++++|...|+.+++.+ |.+..++..++..|...|++++|+..+++..+.++. |...+..+..
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~---- 120 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLAA---- 120 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHH----
Confidence 344555556699999999999999998 788999999999999999999999999999997653 5554444422
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHHHHH--------HHhcCChhhHHHHHHHHhhCCCCcchhhHHHH-HHhhhccC
Q 038606 114 SGQFDKALSVFNEIIDHGWVDEHVFSILLVA--------FSKWGEVDKACELIERMDDCNIRLNEKTFCVL-IHGFVKKS 184 (666)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~ 184 (666)
.+++.+|..+++++....|.++.++..++.. |.+. ++|.+.++ .....+.|+..+.... ...|.+.|
T Consensus 121 i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~ 196 (987)
T PRK09782 121 IPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLK 196 (987)
T ss_pred hccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHh
Confidence 2999999999999999999999998888887 6666 45555554 3333233345544444 88999999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHH
Q 038606 185 RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCK-NKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEI 263 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 263 (666)
++++|++.+.++.+.+ +.+......+..+|.. .++ +.+..+++. .+..+......+...+...|+.+.+...+
T Consensus 197 dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L 270 (987)
T PRK09782 197 QWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYL 270 (987)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999987 5566667778888887 467 888888653 23468888889999999999999888777
Q ss_pred HhhCCCCC---ccchHHHHHHHHHhcCCHH-HHH----------------HHHHHHHhCCCCCchhHHHHHhhcCCCCCC
Q 038606 264 WEDRDVNT---MTLLCNSIMRILVSNGSID-QAY----------------NLLQAMIKGEPIADVGVEMLMIFKGTVSPN 323 (666)
Q Consensus 264 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~-~A~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (666)
.+.....+ ....|.-. +.+.+... .|. +..+...+.+... ....+.. ..|.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~ 341 (987)
T PRK09782 271 IENKPLFTTDAQEKSWLYL---LSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYD-----AAQKLLA-TLPA 341 (987)
T ss_pred HhCcccccCCCccHHHHHH---HHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHH-----HHHHHhc-CCCc
Confidence 77654432 22333322 23322221 000 1111111111000 0001111 2222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHH
Q 038606 324 TSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEES--GFKPTHFTLNSMF 401 (666)
Q Consensus 324 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 401 (666)
......-.......+...++...+..+.+.. +.+......+.....+.|+.++|.++|+..... +-.++......++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 2222111112223356666666666666543 345666666666678899999999999998662 1123344455677
Q ss_pred HHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--chhhHHHHHHHHHhcCCHHHHHHHH
Q 038606 402 RCLCRRQD---VVGALNL----------------------VRKMRVQ-GH-EP--WVKHNTLLIKELCKHGKAMEAFRFL 452 (666)
Q Consensus 402 ~~~~~~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 452 (666)
..|.+.+. ...+..+ +...... +. ++ +...+..+..++.. ++..+|+..+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 77777655 2233222 1111111 11 33 56677777777776 7888999988
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 038606 453 TDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIP 532 (666)
Q Consensus 453 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 532 (666)
.+.... .|+......+...+...|++++|...|+++... +|+...+..+...+.+.|++++|...+++..+.. ++
T Consensus 500 ~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 888776 466544444455556899999999999998664 4444556667788889999999999999999864 22
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038606 533 SVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALI 612 (666)
Q Consensus 533 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 612 (666)
....+..+.......|++++|...+++..+..| +...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P---~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG 650 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIAP---SANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALG 650 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 333444444455567999999999999998854 57789999999999999999999999999863 44577888888
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHhh
Q 038606 613 TGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 613 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (666)
.++...|++++|+..+++..+.. |.++..+..++.++...|++++|...+++
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999864 66789999999999999999999998875
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-25 Score=217.40 Aligned_cols=557 Identities=14% Similarity=0.079 Sum_probs=373.7
Q ss_pred hHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 038606 46 VEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFN 125 (666)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 125 (666)
++.|...|..+++.+ |+|...+..-+......|+|..|..+|..++..++..-+.....+..++.+.|+.+.|+..|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 588899999988887 678777776777777888999999999998776555444445566677888899999999999
Q ss_pred HHHHcCCCCchHHHHHHHHHHhcC---ChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCC
Q 038606 126 EIIDHGWVDEHVFSILLVAFSKWG---EVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFA 202 (666)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 202 (666)
.+.+.+|.+..++..|...-.... .+..+..++...-..+ +-++.+.+.|...|.-.|+++.+..+...+......
T Consensus 224 ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 999888866666666655444443 4666777777776665 347788888888888889999999888887764311
Q ss_pred --ccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHH
Q 038606 203 --SDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIM 280 (666)
Q Consensus 203 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (666)
.-...|-.+.++|-..|++++|...|-+..+. .|+.++ ..+..++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~-------------------------------l~~~Glg 349 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFV-------------------------------LPLVGLG 349 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcc-------------------------------ccccchh
Confidence 12345777888888999999999998887764 343311 4455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCC
Q 038606 281 RILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDG----KLDLALSLFREMTQIGCM 356 (666)
Q Consensus 281 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~ 356 (666)
..++..|+++.+...|+.+.... |.+..+...+...|...+ ..+.|..++.+..+.. +
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~-----------------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~ 411 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQL-----------------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-P 411 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhC-----------------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-c
Confidence 77888888888888888887765 666667777777776664 4566666666666544 4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCch
Q 038606 357 QNVFLYNNLIDGLCNSNRLEESYELLREM----EESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQ---GHEPWV 429 (666)
Q Consensus 357 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~ 429 (666)
.|...|-.+...+.....+.. +..|..+ ...+-++.....|.+...+...|+++.|...|...... ...++.
T Consensus 412 ~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 412 VDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred ccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence 566677666666655444333 5555443 23344466677777777777888888888877776654 112222
Q ss_pred ------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHH
Q 038606 430 ------KHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVC-YSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAY 502 (666)
Q Consensus 430 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 502 (666)
.+-..+...+...++.+.|.+.|..+.+. .|+-.. |-.++......+...+|...+......+ ..++..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ar 567 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNAR 567 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHH
Confidence 12333555566667777777888777776 344332 2222222223466677777777766542 4455566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc------------cCChhHHHHHHHHHHhcCCCCCC
Q 038606 503 NIIISGLCKAQRVAEAEDLFNEMITK-GLIPSVATYNLLINGWCK------------SGNIDQAMLCLSRMLEKESGSPD 569 (666)
Q Consensus 503 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~ 569 (666)
+.+...+.+...+..|..-|+...+. ...+|..+..+|.+.|.. .+..++|+++|.++++.+| .+
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp--kN 645 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP--KN 645 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc--ch
Confidence 66666666666676676655555443 122566666666665532 2345667777777776665 56
Q ss_pred HHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 038606 570 VITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGM-KPDMFVFVALIS 648 (666)
Q Consensus 570 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~ 648 (666)
...-|.+.-+++..|++.+|..+|.+.++.. .....+|..+..+|...|+|..|++.|+...+.-. ..+..+...|++
T Consensus 646 ~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 646 MYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 6666677777777777777777777777753 23456677777777777777777777777665322 335677777777
Q ss_pred HHHhcCChhhHHHHH
Q 038606 649 AFLSELNPPLAFEVL 663 (666)
Q Consensus 649 ~~~~~g~~~~A~~~~ 663 (666)
++.+.|.+.+|.+.+
T Consensus 725 a~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHhhhHHHHHHHH
Confidence 777777777777654
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.9e-25 Score=213.71 Aligned_cols=570 Identities=12% Similarity=0.030 Sum_probs=407.3
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCChhhHHHHHHHHHhcCChh
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGL-CVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
+...-+++.|...+.-+++.+++ +.-.+.--++.....|+|-.|+.+|..++...+ .+|+ ....++.++++.|+.+
T Consensus 140 ~~~~~~~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~ 216 (1018)
T KOG2002|consen 140 LEGDKSMDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSE 216 (1018)
T ss_pred hcCCccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchh
Confidence 33334478899999999997755 333333345566677999999999999887763 1333 3445677889999999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHH
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYC---NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIER 160 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (666)
.|...|.++++.++. +..++..|...-. ....+..+...+..+...++.+|.+.+.|...+.-.|+++.+..+...
T Consensus 217 ~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 217 KALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred hHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999997663 5555544443322 235678899999999999999999999999999999999999999999
Q ss_pred HhhCCCC--cchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCC
Q 038606 161 MDDCNIR--LNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITP 238 (666)
Q Consensus 161 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 238 (666)
+...... .-...|-.+...|-..|++++|..+|....+.....-+..+.-+++.|.+.|+++.+...|+.+.+. .|
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p 373 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LP 373 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Cc
Confidence 8875321 1233477788999999999999999999887641111445567899999999999999999999885 45
Q ss_pred CHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCchhHHHHH
Q 038606 239 DFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNG----SIDQAYNLLQAMIKGEPIADVGVEMLM 314 (666)
Q Consensus 239 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~ 314 (666)
+.. .+...+...|...+ ..+.|..++.......
T Consensus 374 ~~~--------------------------------etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~----------- 410 (1018)
T KOG2002|consen 374 NNY--------------------------------ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT----------- 410 (1018)
T ss_pred chH--------------------------------HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-----------
Confidence 542 22223333333332 4566777777766654
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 038606 315 IFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREM----TQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEES-- 388 (666)
Q Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 388 (666)
+.|...|..+...+....-+.. +..|..+ ...+.++.+...|.+...+...|++++|...|......
T Consensus 411 ------~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~ 483 (1018)
T KOG2002|consen 411 ------PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLL 483 (1018)
T ss_pred ------cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhh
Confidence 6677777777777665544433 5555543 33444577778888888888888888888888877554
Q ss_pred -CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038606 389 -GFKPTH------FTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFL 461 (666)
Q Consensus 389 -~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 461 (666)
...++. .+-..+.+..-..++.+.|.+.|..+.... |.-+..|..++-.....+...+|...+......+ .
T Consensus 484 ~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 484 EVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred hhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 112222 233345566666778888888888887753 4445555555544445577788888888887764 4
Q ss_pred CChhhHHHHHHHHHccCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHc------------cCCHHHHHHHHHHHHHC
Q 038606 462 PDIVCYSAAIGGLIDIKRVDLALELFRDICAHG-CCPDVVAYNIIISGLCK------------AQRVAEAEDLFNEMITK 528 (666)
Q Consensus 462 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~ 528 (666)
.++..++.+...+.+..++..|.+-|..+.+.- ..+|+.+.-.|.+.|.+ .+..++|+++|.+.++.
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~ 641 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN 641 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc
Confidence 466667777778888888888888776665431 23566666666665543 24567788888888876
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHH
Q 038606 529 GLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK-GCAPNRIT 607 (666)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 607 (666)
. +-+...-+.+.-+++..|++.+|..+|.++.+... ....+|.++.++|...|++..|+++|+...+. .-..+..+
T Consensus 642 d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 642 D-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred C-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 3 33666777777888888999999999998887654 34457888889999999999999999886654 33446778
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038606 608 FMALITGLCKCDRPRAALVHFRMMKEKG 635 (666)
Q Consensus 608 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 635 (666)
...|.+++.+.|.+.+|.+.+...+...
T Consensus 719 l~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8888899999999999988888887653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=4.8e-25 Score=203.91 Aligned_cols=445 Identities=14% Similarity=0.081 Sum_probs=337.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
...++.-..+.|++++|++.-..+-.++ |.+......+...+.+..+.+.....-....+..++ -..+|..+...+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHH
Confidence 4556777778888888888888777776 455566666666777777777777766666665544 5677888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhh-HHHHHHhhhccCCHHHHHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKT-FCVLIHGFVKKSRVDKALQ 191 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~ 191 (666)
..|+++.|+.+++.+.+..|...++|..++.++...|+.+.|.+.|.+.++.+ |+... .+.+...+...|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888888888888888888888888888888888888888864 33333 3334445556788888888
Q ss_pred HHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCC
Q 038606 192 LFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNT 271 (666)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 271 (666)
.+.+..+.. +-=...|+.|...+-.+|+...|++-|++..+. +|+.
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f------------------------------- 251 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNF------------------------------- 251 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcc-------------------------------
Confidence 888877663 223457888888888888888888888888873 4553
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038606 272 MTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMT 351 (666)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 351 (666)
..+|..+...|...+.+++|...|.+..... |.....+..+...|-.+|.++.|+..+++..
T Consensus 252 -~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-----------------pn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 252 -LDAYINLGNVYKEARIFDRAVSCYLRALNLR-----------------PNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred -hHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-----------------CcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 2567778888888888888888888887765 6667777788888888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhh
Q 038606 352 QIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKH 431 (666)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 431 (666)
+.. |.-+..|+.|..++-..|+..+|.+.|.+..... +-...+.+.+...+...|.++.|..+|....+.. +.-...
T Consensus 314 ~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa 390 (966)
T KOG4626|consen 314 ELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAA 390 (966)
T ss_pred hcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhh
Confidence 765 3446788888888888888888888888887763 3345677888888888888888888888887653 334556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Q 038606 432 NTLLIKELCKHGKAMEAFRFLTDMVQEGFLPD-IVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLC 510 (666)
Q Consensus 432 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 510 (666)
++.+...|-+.|+.++|+..|++.++- .|+ ...++.+...|-..|+++.|.+.+.+.+..+ +.-....+.+.+.|-
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYK 467 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhh
Confidence 778888888888888888888888875 454 4567778888888888888888888887753 223456777888888
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 038606 511 KAQRVAEAEDLFNEMITKGLIPSV-ATYNLLIN 542 (666)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~ 542 (666)
..|+..+|+.-++...+. +||. ..+..++.
T Consensus 468 DsGni~~AI~sY~~aLkl--kPDfpdA~cNllh 498 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKL--KPDFPDAYCNLLH 498 (966)
T ss_pred ccCCcHHHHHHHHHHHcc--CCCCchhhhHHHH
Confidence 888888888888888874 4553 23433433
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=7e-24 Score=196.28 Aligned_cols=446 Identities=16% Similarity=0.121 Sum_probs=367.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
....|..-..+.|++++|++....+-..++. +......+...+.+..+++....--....+..+.-.++|..++..+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 3566777888999999999998888766544 445555566778888888888777777778888888899999999999
Q ss_pred cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHH-HHHHHHHhhhccCChhHHHH
Q 038606 148 WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAA-MYDVIIGGLCKNKQLEMALQ 226 (666)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~ 226 (666)
.|++++|+.+++.+++..+ .....|..+..++...|+.+.|...|.+....+ |+.. ..+.+...+...|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999999853 367789999999999999999999999988764 5544 33445666667899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038606 227 LYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIA 306 (666)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 306 (666)
.|.+..+. .|.. ..+|..+.-.+...|++..|++.|++..+.+
T Consensus 206 cYlkAi~~--qp~f--------------------------------AiawsnLg~~f~~~Gei~~aiq~y~eAvkld--- 248 (966)
T KOG4626|consen 206 CYLKAIET--QPCF--------------------------------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--- 248 (966)
T ss_pred HHHHHHhh--CCce--------------------------------eeeehhcchHHhhcchHHHHHHHHHHhhcCC---
Confidence 99988874 4433 2789999999999999999999999999877
Q ss_pred chhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 307 DVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREME 386 (666)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 386 (666)
|.-..+|..|...|...+.++.|...+.+..... +.....+..+...|..+|..+-|++.|++..
T Consensus 249 --------------P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 249 --------------PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred --------------CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 6667789999999999999999999999988765 4556778888888999999999999999998
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-h
Q 038606 387 ESGFKP-THFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPD-I 464 (666)
Q Consensus 387 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 464 (666)
+. .| -...|+.+..++...|+..+|.+.+.+.+... +.-....+.+...+...|..++|..+|....+- .|. .
T Consensus 314 ~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~a 388 (966)
T KOG4626|consen 314 EL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFA 388 (966)
T ss_pred hc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--Chhhh
Confidence 86 44 45789999999999999999999999998775 455677888999999999999999999998876 333 4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 038606 465 VCYSAAIGGLIDIKRVDLALELFRDICAHGCCPD-VVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPS-VATYNLLIN 542 (666)
Q Consensus 465 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 542 (666)
...+.+...|-+.|++++|+..|++.... .|+ ...|+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|..
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLas 464 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLAS 464 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHH
Confidence 56788889999999999999999998874 454 457888888999999999999999999875 454 347788888
Q ss_pred HHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 038606 543 GWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGL 580 (666)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (666)
.|...|+..+|+.-+++.++..|..|| .+..++.+.
T Consensus 465 i~kDsGni~~AI~sY~~aLklkPDfpd--A~cNllh~l 500 (966)
T KOG4626|consen 465 IYKDSGNIPEAIQSYRTALKLKPDFPD--AYCNLLHCL 500 (966)
T ss_pred HhhccCCcHHHHHHHHHHHccCCCCch--hhhHHHHHH
Confidence 999999999999999999988764555 455555544
No 17
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.93 E-value=4e-19 Score=172.87 Aligned_cols=638 Identities=12% Similarity=0.083 Sum_probs=432.2
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
++-..|+.++|+.++.+++++. |..+..|..|+.+|.++|+.+++...+-.+--.. |.|..-|..+.....+.|+++
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHH
Confidence 3444599999999999999954 5689999999999999999999999988777666 788899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc-h----HHHHHHHHHHhcCChhhHHHHH
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDE-H----VFSILLVAFSKWGEVDKACELI 158 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~----~~~~l~~~~~~~g~~~~A~~~~ 158 (666)
.|+-.|.++++.+++ +-...-.-+..|-+.|+...|.+.|.++....|... . .-..++..+...++.+.|.+.+
T Consensus 225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998765 555555567788899999999999999999876222 1 1233466777888889999999
Q ss_pred HHHhhCC-CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCC---------------------------CCccHHHHHH
Q 038606 159 ERMDDCN-IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSG---------------------------FASDAAMYDV 210 (666)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------------~~~~~~~~~~ 210 (666)
+.....+ -..+...++.++..|.+...++.|......+.... ..++...+ -
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 8887732 13455678889999999999999998877766521 12222221 1
Q ss_pred HHHhhhccCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCC--ccchHHHHHHHHHhc
Q 038606 211 IIGGLCKNKQLEMALQLYSEMKGSG--ITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNT--MTLLCNSIMRILVSN 286 (666)
Q Consensus 211 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 286 (666)
+.-++......+....+..-..... +.-+...+..+..++...|....++..+......++ ...+|..+.++|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2233344444455555555555554 344667899999999999999988887766654443 356999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------cCCCCC
Q 038606 287 GSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ--------IGCMQN 358 (666)
Q Consensus 287 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~ 358 (666)
|..+.|.+.|+.++... |.+...-..|...+.+.|+.++|.+.++.+.. .+..|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-----------------p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e 525 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-----------------PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPE 525 (895)
T ss_pred hhHHHHHHHHHHHHhcC-----------------CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHH
Confidence 99999999999999887 77888888999999999999999999998542 234455
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHH
Q 038606 359 VFLYNNLIDGLCNSNRLEESYELLREMEESG-----FKP-----------------THFTLNSMFRCLCRRQDVVGALNL 416 (666)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~ 416 (666)
..........+.+.|+.++-..+-..|.... +-| .......+..+-.+.++.....+.
T Consensus 526 ~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 605 (895)
T KOG2076|consen 526 RRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKA 605 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhc
Confidence 5555666777888898887666665554321 111 111122222333333332222111
Q ss_pred HHHH------HHcCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChh----hHHHHHHHHHccCChHHH
Q 038606 417 VRKM------RVQGH--EPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGF-LPDIV----CYSAAIGGLIDIKRVDLA 483 (666)
Q Consensus 417 ~~~~------~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~a 483 (666)
...- ...+. ..+-..+..++..+++.+.+++|..+...+..... ..+.. .-...+.+....+++..|
T Consensus 606 l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a 685 (895)
T KOG2076|consen 606 LSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDA 685 (895)
T ss_pred ccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 1110 11111 11223455677788999999999999988877532 11222 224455667788999999
Q ss_pred HHHHHHHHhc-CC---CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 038606 484 LELFRDICAH-GC---CPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSR 559 (666)
Q Consensus 484 ~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (666)
.+.++.+... +. +--...|+..++...+.++-.--...+.........-+.............++.+..|+..+-+
T Consensus 686 ~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 686 FSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMR 765 (895)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHH
Confidence 9999998764 11 1223455655555555554433344444433321111122222223345567889999999988
Q ss_pred HHhcCCCCCCHHhHHHHHHHHHHc-------C---ChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCChhHHHHHH
Q 038606 560 MLEKESGSPDVITYTTLIDGLCIA-------G---RPDDAIMLWNEMEEKGC-APNRITFMALITGLCKCDRPRAALVHF 628 (666)
Q Consensus 560 ~~~~~~~~~~~~~~~~l~~~~~~~-------g---~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~ 628 (666)
+....|..|-... ++..++.+. . ..-.++.++++..+... .....++-.+.++|-..|-..-|..+|
T Consensus 766 a~~~~pd~Pl~nl--~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YY 843 (895)
T KOG2076|consen 766 AFRQNPDSPLINL--CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYY 843 (895)
T ss_pred HHHhCCCCcHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 8887653343322 222222211 1 13345566666555321 124677788999999999999999999
Q ss_pred HHHHHcC-----------CCCCHHHHHHHHHHHHhcCChhhHHHHHhh
Q 038606 629 RMMKEKG-----------MKPDMFVFVALISAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 629 ~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (666)
++..+.. .......-..+.-.|..+|+...|..++++
T Consensus 844 ekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 844 EKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999542 111245556677789999999999998864
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.2e-20 Score=195.20 Aligned_cols=234 Identities=12% Similarity=-0.002 Sum_probs=113.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038606 326 SFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLC 405 (666)
Q Consensus 326 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (666)
.+..+...+...|++++|+..|++..... +.....|..+...+...|++++|...|+++.+.+ +.+..++..+...+.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444444444444444444444432 1223344444444444455555555554444432 223444444444444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHH
Q 038606 406 RRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALE 485 (666)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 485 (666)
..|++++|...|++..... +.+...+..+...+.+.|++++|+..++...+.. +.+...++.+...+...|++++|+.
T Consensus 411 ~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHH
Confidence 5555555555555544432 2233334444445555555555555555554432 2234445555555555555555555
Q ss_pred HHHHHHhcCCCccH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 038606 486 LFRDICAHGCCPDV------VAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSR 559 (666)
Q Consensus 486 ~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 559 (666)
.|++........+. ..++.....+...|++++|..++++..... +.+...+..+..++...|++++|...|++
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 55555443211000 011112222333567777777777766542 12333566667777777777777777777
Q ss_pred HHhcC
Q 038606 560 MLEKE 564 (666)
Q Consensus 560 ~~~~~ 564 (666)
..+..
T Consensus 568 A~~l~ 572 (615)
T TIGR00990 568 AAELA 572 (615)
T ss_pred HHHHh
Confidence 66553
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=2.6e-21 Score=198.85 Aligned_cols=368 Identities=10% Similarity=0.023 Sum_probs=231.7
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ 109 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 109 (666)
...+..++..+.+.|++++|+.+++.++... |.+...+..++.++...|++++|...|+++.+..+. +...+..+..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~ 118 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVAS 118 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 3345556677777777777777777777776 556667777777777777777777777777776544 5666777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
.+...|++++|+..++++....|.++.++..++.++...|++++|...++.+....+. +...+..+ ..+...|++++|
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence 7777777777777777777777777777777777777777777777777777665432 22233222 235667777777
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCC
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDV 269 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 269 (666)
...++.+.+....++...+..++..+...|++++|...++++.+.. |+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~----------------------------- 245 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDG----------------------------- 245 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC-----------------------------
Confidence 7777777665322334444455566777777777777777777643 332
Q ss_pred CCccchHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 038606 270 NTMTLLCNSIMRILVSNGSIDQ----AYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALS 345 (666)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 345 (666)
...+..+...+...|++++ |...|++..... |.+...+..+...+...|++++|..
T Consensus 246 ---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-----------------P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 246 ---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-----------------SDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred ---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 1344556666666666664 666676666654 5556666666777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038606 346 LFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTH-FTLNSMFRCLCRRQDVVGALNLVRKMRVQG 424 (666)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 424 (666)
.++++.... +.+...+..+..++.+.|++++|...|+.+... .|+. ..+..+..++...|+.++|...|+++.+..
T Consensus 306 ~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 306 LLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777666654 344555566666666777777777777666654 2333 223334555666777777777777666553
Q ss_pred CCCchhhH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 038606 425 HEPWVKHN----TLLIKELCKHGKAMEAFRFLTDMV 456 (666)
Q Consensus 425 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 456 (666)
.......| ..+-.++...+...+......++.
T Consensus 383 P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 383 ASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred hhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 22222222 233333444444444434444443
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=5e-20 Score=190.57 Aligned_cols=258 Identities=14% Similarity=-0.023 Sum_probs=195.3
Q ss_pred hcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038606 336 KDGKLDLALSLFREMTQIG--CMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGA 413 (666)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 413 (666)
..+++++|.+.|+.....+ .+.....+..+...+...|++++|+..+++..+.. +.+...|..+...+...|++++|
T Consensus 306 ~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 306 ADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3467888888888888754 23345677888888889999999999999998763 33466788888889999999999
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhc
Q 038606 414 LNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAH 493 (666)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 493 (666)
...|+++.+.. +.+...+..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++....
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999988764 4566778888888888999999999999988874 334566777778888889999999998888775
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHccCChhHHHHHHHHHHhcCCCC
Q 038606 494 GCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVA------TYNLLINGWCKSGNIDQAMLCLSRMLEKESGS 567 (666)
Q Consensus 494 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 567 (666)
.+.+...++.+...+...|++++|+..|++........+.. .++.....+...|++++|.+++++.....+
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-- 539 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-- 539 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC--
Confidence 35567788888888888889999998888887753211111 111222233446888888888888877654
Q ss_pred CCHHhHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038606 568 PDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK 599 (666)
Q Consensus 568 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (666)
.+...+..+..++...|++++|++.|++..+.
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456778888888888888888888888764
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.7e-22 Score=196.44 Aligned_cols=311 Identities=16% Similarity=0.132 Sum_probs=224.3
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cccHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD---KYTLT 105 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~ 105 (666)
........+..+...|++++|...|.++.+.+ |.+..++..++..+...|++++|...++.+.+.+..++ ...+.
T Consensus 34 ~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 111 (389)
T PRK11788 34 RLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQ 111 (389)
T ss_pred hccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 44445555667788899999999999999887 67778899999999999999999999999887532211 24567
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcch----hhHHHHHHhhh
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE----KTFCVLIHGFV 181 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 181 (666)
.++..|.+.|++++|..+|+++.+..+.+..++..++.++...|++++|.+.++.+.+.+..+.. ..+..+...+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 77888888899999999999988877777778888888888899999999988888876533221 23445666777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHH
Q 038606 182 KKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVK 261 (666)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 261 (666)
+.|++++|...|+++.+.. +.+...+..++..+.+.|++++|.++|+++...+ |+..
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~-------------------- 248 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PEYL-------------------- 248 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hhhH--------------------
Confidence 8888888888888887654 4456677777788888888888888888887642 2210
Q ss_pred HHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChH
Q 038606 262 EIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLD 341 (666)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 341 (666)
...+..++.+|...|++++|.+.++++.... |+...+..++..+.+.|+++
T Consensus 249 -----------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~------------------p~~~~~~~la~~~~~~g~~~ 299 (389)
T PRK11788 249 -----------SEVLPKLMECYQALGDEAEGLEFLRRALEEY------------------PGADLLLALAQLLEEQEGPE 299 (389)
T ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------CCchHHHHHHHHHHHhCCHH
Confidence 0334556667777777777777777776643 34444566777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHH
Q 038606 342 LALSLFREMTQIGCMQNVFLYNNLIDGLCN---SNRLEESYELLREMEESGFKPTHF 395 (666)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 395 (666)
+|..+++++.+.. |+...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 300 ~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 300 AAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777766653 666666666665553 446777777777776655555443
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=8.8e-21 Score=194.90 Aligned_cols=395 Identities=14% Similarity=0.041 Sum_probs=258.4
Q ss_pred HhccCChHHHHHHHHHHHHcCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh
Q 038606 40 LGSVGLVEEANMLFDQVKREGLC-VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFD 118 (666)
Q Consensus 40 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (666)
+.++.+|+.-.-+|.+..+.... ..+..-...++..+.+.|++++|..+++..+...+. +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 45667777777777666554210 123344555667777788888888888887776555 4455555666666778888
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHh
Q 038606 119 KALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTK 198 (666)
Q Consensus 119 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (666)
+|++.|+++...+|.++.++..++..+...|++++|...++++.... +.+...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 88888888888877777777777888888888888888888877764 33556677777777788888888887777665
Q ss_pred CCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHH
Q 038606 199 SGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNS 278 (666)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (666)
.. +.+...+..+ ..+...|++++|...++.+......++. .....
T Consensus 173 ~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~---------------------------------~~~~~ 217 (656)
T PRK15174 173 EV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQ---------------------------------ESAGL 217 (656)
T ss_pred hC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcch---------------------------------hHHHH
Confidence 53 2333333333 3366778888888888777664322222 22233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHcC
Q 038606 279 IMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDL----ALSLFREMTQIG 354 (666)
Q Consensus 279 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~ 354 (666)
+...+...|++++|...++++.... +.+...+..+...+...|++++ |...|+++.+..
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~-----------------p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARG-----------------LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-----------------CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 4456667788888888888877765 5667777777778888887775 677777777654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHH
Q 038606 355 CMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTL 434 (666)
Q Consensus 355 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 434 (666)
|.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++...+ +.+...+..
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~ 357 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRY 357 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHH
Confidence 4456677777777888888888888888777653 3345566667777778888888888887777653 222233334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHccCChHHHHHHHHHHH
Q 038606 435 LIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCY----SAAIGGLIDIKRVDLALELFRDIC 491 (666)
Q Consensus 435 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~ 491 (666)
+..++...|+.++|...|+++.+....-....| ..+-.++...+..++......++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 456677778888888888877665322122222 233333444455544434444443
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=1.4e-20 Score=197.85 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=73.7
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP 106 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 106 (666)
+.++....-.++.....|+.++|+++|.++.... +.+...+..++.++...|++++|...|+++++..+. ++..+..
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~ 88 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRG 88 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 3444444444444444444444444444444322 233334444444444444444444444444443222 3333444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCH
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRV 186 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 186 (666)
++.++...|++++|+..++++.+..|.++. +..++.++...|+.++|+..++++.+..+. +...+..+..++...+..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 444444444445554444444444444444 444444444444444454444444444321 233333334444444444
Q ss_pred HHHHHHHHH
Q 038606 187 DKALQLFDK 195 (666)
Q Consensus 187 ~~A~~~~~~ 195 (666)
+.|++.++.
T Consensus 167 e~Al~~l~~ 175 (765)
T PRK10049 167 APALGAIDD 175 (765)
T ss_pred HHHHHHHHh
Confidence 444444443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=5.1e-20 Score=193.70 Aligned_cols=157 Identities=11% Similarity=0.027 Sum_probs=122.9
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
..|++..|+.++|+.+|+.... ..+.+..++..++.++.+.|++++|..+|+++++.. |.+...+..++.++...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 3677888888888888877765 234456668888888888888888888888888776 6677777788888888888
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERM 161 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (666)
+++|...++++++..+. +.. +..+..++...|++++|+..++++.+..|.++.++..++.++...|..++|++.++++
T Consensus 99 ~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 99 YDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 88888888888876444 555 7777778888888888888888888888888777777788888888888888877766
Q ss_pred hh
Q 038606 162 DD 163 (666)
Q Consensus 162 ~~ 163 (666)
..
T Consensus 177 ~~ 178 (765)
T PRK10049 177 NL 178 (765)
T ss_pred CC
Confidence 64
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=5.5e-19 Score=181.60 Aligned_cols=461 Identities=12% Similarity=0.042 Sum_probs=303.8
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
.|..+.+...-+....++|+++.|+..|+++++.+ |.+......++..+...|+.++|+..+++..... +.......
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 44467777778888899999999999999999987 4443333388899999999999999999998311 11233333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
.+...|...|++++|+++|+++.+.+|.++.++..++..+...++.++|++.++++.... |+...+..++..+...++
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~ 184 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcch
Confidence 446688888999999999999999999999999999999999999999999999999874 444455445445545667
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHh
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWE 265 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 265 (666)
..+|++.++++.+.. |.+...+..+..++.+.|-...|.++..+-... +.+.. .... +.+.+...+..
T Consensus 185 ~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~-----~~~l-----~~~~~a~~vr~ 252 (822)
T PRK14574 185 NYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEH-----YRQL-----ERDAAAEQVRM 252 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHH-----HHHH-----HHHHHHHHHhh
Confidence 767999999999886 567888888899999999999998777653321 11111 1100 00001111100
Q ss_pred hCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHH----HHHHHHHHHHhcCChH
Q 038606 266 DRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTS----SFDIIINTLLKDGKLD 341 (666)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~ 341 (666)
......+.. .+.--.+.|+.-++.+...-+ ..|+... +..-.+.++...|+..
T Consensus 253 a~~~~~~~~---------~r~~~~d~ala~~~~l~~~~~--------------~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 253 AVLPTRSET---------ERFDIADKALADYQNLLTRWG--------------KDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred cccccccch---------hhHHHHHHHHHHHHHHHhhcc--------------CCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 000000000 000123455555555554221 0122222 2234566788899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038606 342 LALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESG-----FKPTHFTLNSMFRCLCRRQDVVGALNL 416 (666)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (666)
++++.|+.+...+.+....+-..+.++|...+++++|+.+|+.+.... .+++......|..++...+++++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999988866666678889999999999999999999986642 122344457788999999999999999
Q ss_pred HHHHHHcCC-----------CCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHH
Q 038606 417 VRKMRVQGH-----------EPW---VKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDL 482 (666)
Q Consensus 417 ~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 482 (666)
++.+..... .|+ ......++..+...|+..+|.+.++.+.... +-|......+...+...|.+..
T Consensus 390 l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 390 AVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 999987421 011 1122334444555566666666666655543 3355555555555555666666
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 038606 483 ALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITK 528 (666)
Q Consensus 483 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 528 (666)
|.+.++..... -+.+..+....+.++...+++.+|..+.+.+.+.
T Consensus 469 A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 469 AEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 66666544443 2333444445555555556666665555555553
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=4.4e-18 Score=165.76 Aligned_cols=615 Identities=14% Similarity=0.082 Sum_probs=410.7
Q ss_pred CCcchHH--HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 28 MSPGALG--FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 28 ~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
+++++-. ..+..+...|++++|.+++.++++++ |.+..+|..|+..|-..|+.+++...+-.+--.++. |...|.
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~ 211 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWK 211 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHH
Confidence 3444433 34566677799999999999999998 789999999999999999999999988777666555 778999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHH----HHHHhhh
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFC----VLIHGFV 181 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~ 181 (666)
.+.....+.|++.+|.-.|.++++..|.+-....--...|-+.|+...|.+.|.++....++.|..-+. .+++.+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887777778889999999999999999999986533332222 3456677
Q ss_pred ccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHH-----------------
Q 038606 182 KKSRVDKALQLFDKMTKS-GFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEIL----------------- 243 (666)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------- 243 (666)
..++-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+|..-+
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~ 371 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG 371 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence 788889999999987762 11345556888899999999999999998888763333332222
Q ss_pred -----------HHHHHhhhccCcHHHHHHHHHhhCC--CCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhH
Q 038606 244 -----------SKLITSCSDEGELTLLVKEIWEDRD--VNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGV 310 (666)
Q Consensus 244 -----------~~ll~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 310 (666)
..+--...+.+.....+........ +......+..+..++...|++.+|+++|..+.....
T Consensus 372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~------ 445 (895)
T KOG2076|consen 372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG------ 445 (895)
T ss_pred CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc------
Confidence 1111112222333333333333322 344556788888999999999999999999887652
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh---
Q 038606 311 EMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEE--- 387 (666)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 387 (666)
-.+...|..+.++|...|..+.|.+.|+.++... |.+...-..|...+.+.|+.++|.+.+..+..
T Consensus 446 ----------~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 446 ----------YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred ----------ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 3456688899999999999999999999998765 44555666777888899999999999988542
Q ss_pred -----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------------CCCchhhHHHHHHHHH
Q 038606 388 -----SGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQG----------------------HEPWVKHNTLLIKELC 440 (666)
Q Consensus 388 -----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~ 440 (666)
.+..|+..........+...|+.++-+.+...|.... .+........++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 2234444455555666778888777655555443311 0111112222333333
Q ss_pred hcCCHHHHHHH------HHHHHHcCCCCCh--hhHHHHHHHHHccCChHHHHHHHHHHHhcCC-CccHH----HHHHHHH
Q 038606 441 KHGKAMEAFRF------LTDMVQEGFLPDI--VCYSAAIGGLIDIKRVDLALELFRDICAHGC-CPDVV----AYNIIIS 507 (666)
Q Consensus 441 ~~~~~~~a~~~------~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~ 507 (666)
+.++....... +......++..+. ..+..++.++.+.+.+++|+.+...+..... ..+.. .-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 33332211111 1111112222221 2345667788899999999999888775421 11221 2244556
Q ss_pred HHHccCCHHHHHHHHHHHHHC-CC--CC-CHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHc
Q 038606 508 GLCKAQRVAEAEDLFNEMITK-GL--IP-SVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIA 583 (666)
Q Consensus 508 ~~~~~~~~~~a~~~~~~~~~~-~~--~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (666)
+....+++..|...++.|... ++ .| -...|+...+...+.++-.--...+..+....+ .-+..............
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~-~~~~~l~~i~gh~~~~~ 753 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNK-DDTPPLALIYGHNLFVN 753 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cCCcceeeeechhHhhc
Confidence 677889999999999998875 11 12 123455455555555554444444444444433 11222333334445667
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH----------ccCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Q 038606 584 GRPDDAIMLWNEMEEKGCAPN-RITFMALITGLC----------KCDRPRAALVHFRMMKEKGMK-PDMFVFVALISAFL 651 (666)
Q Consensus 584 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 651 (666)
+.+.-|+..+-+.... .|+ +.+-..+..++. ++-..-+++.++.+..+.... ....+++.++++|-
T Consensus 754 ~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh 831 (895)
T KOG2076|consen 754 ASFKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYH 831 (895)
T ss_pred cchHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 8899999988887764 355 333223333332 122244667777777664322 24689999999999
Q ss_pred hcCChhhHHHHHhh
Q 038606 652 SELNPPLAFEVLKE 665 (666)
Q Consensus 652 ~~g~~~~A~~~~~~ 665 (666)
..|-..-|..++++
T Consensus 832 ~~gl~~LA~~YYek 845 (895)
T KOG2076|consen 832 QIGLVHLAVSYYEK 845 (895)
T ss_pred HcccHHHHHHHHHH
Confidence 99999999999876
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=6e-21 Score=187.91 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=199.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcc---hhhHHHHHHhhhccC
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLN---EKTFCVLIHGFVKKS 184 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 184 (666)
...+...|++++|...|+++.+.+|.+..++..++..+...|++++|..+++.+......++ ...+..+...|.+.|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33445667777777777777777666666677777777777777777777777766422111 234666777777788
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHH
Q 038606 185 RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIW 264 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 264 (666)
++++|+.+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------- 179 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--------------------- 179 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---------------------
Confidence 8888888888877653 456667777788888888888888888887765432221000
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038606 265 EDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLAL 344 (666)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 344 (666)
...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|++++|.
T Consensus 180 --------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----------------p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 180 --------AHFYCELAQQALARGDLDAARALLKKALAAD-----------------PQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred --------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-----------------cCCHHHHHHHHHHHHHCCCHHHHH
Confidence 0223445566677777777777777776654 445556666777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038606 345 SLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQG 424 (666)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 424 (666)
+.++++...+......+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+.
T Consensus 235 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 235 EALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 77777776542222345666777777777777777777777665 355555566667777777777777777766654
Q ss_pred CCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChh
Q 038606 425 HEPWVKHNTLLIKELCK---HGKAMEAFRFLTDMVQEGFLPDIV 465 (666)
Q Consensus 425 ~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 465 (666)
.|+...+..++..+.. .|+.++++.+++++.+.++.|++.
T Consensus 312 -~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 312 -HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3555555555554443 346666777777766655555544
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=1.1e-16 Score=149.95 Aligned_cols=601 Identities=12% Similarity=0.053 Sum_probs=425.4
Q ss_pred hchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038606 11 IAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLK 90 (666)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 90 (666)
...|+.+++.+... .|..|..+-.-++.=-..|++..|..+...-.+.- |.+...|.--+ +....+.|..+..
T Consensus 267 ikKaR~llKSvret-nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c--prSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 267 IKKARLLLKSVRET-NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC--PRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHhc-CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC--CchHHHHHHHH----hcCChHHHHHHHH
Confidence 34455555555442 23355555555555555566666665555555543 44444544333 3334444555555
Q ss_pred HHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcch
Q 038606 91 EMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE 170 (666)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 170 (666)
..++..+. ++..|..... -..+...=.+++.+.++.-|.+...| .+....-+.+.|.-++.++.+. ++.+.
T Consensus 340 ~Avr~~P~-Sv~lW~kA~d---LE~~~~~K~RVlRKALe~iP~sv~LW----KaAVelE~~~darilL~rAvec-cp~s~ 410 (913)
T KOG0495|consen 340 NAVRFLPT-SVRLWLKAAD---LESDTKNKKRVLRKALEHIPRSVRLW----KAAVELEEPEDARILLERAVEC-CPQSM 410 (913)
T ss_pred HHHHhCCC-ChhhhhhHHh---hhhHHHHHHHHHHHHHHhCCchHHHH----HHHHhccChHHHHHHHHHHHHh-ccchH
Confidence 55543221 2223322221 12333344556666666655544433 3344455666688888888775 23233
Q ss_pred hhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHH----HhCCCCCCHHHHHHH
Q 038606 171 KTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEM----KGSGITPDFEILSKL 246 (666)
Q Consensus 171 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l 246 (666)
..| -+|.+..-++.|.++++...+. ++.+..+|-+-...--.+|+.+....++.+- ...|+..+...+..=
T Consensus 411 dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~e 485 (913)
T KOG0495|consen 411 DLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKE 485 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHH
Confidence 333 3455667788999999988765 4778888877777777788888888887654 456777777777766
Q ss_pred HHhhhccCcHHHHHHHH----HhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCC
Q 038606 247 ITSCSDEGELTLLVKEI----WEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSP 322 (666)
Q Consensus 247 l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (666)
...|-..|..-....-+ -.....+....+|..-...+.+.+.++-|..+|...++.. +.
T Consensus 486 Ae~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-----------------p~ 548 (913)
T KOG0495|consen 486 AEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-----------------PC 548 (913)
T ss_pred HHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-----------------cc
Confidence 66777666655222211 1222334455788888899999999999999999988875 67
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038606 323 NTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFR 402 (666)
Q Consensus 323 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 402 (666)
+...|......--..|..+....+|+++...- +.....|-.....+...|+...|..++....+.+ +.+...|...+.
T Consensus 549 k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavK 626 (913)
T KOG0495|consen 549 KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVK 626 (913)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 77788888877778899999999999988754 5566677777777888899999999999988774 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHccCChH
Q 038606 403 CLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPD-IVCYSAAIGGLIDIKRVD 481 (666)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 481 (666)
.-.....++.|..+|.+.... .++...|..-+....-.++.++|++++++.++. -|+ ...|-.+...+-+.++.+
T Consensus 627 le~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 889999999999999988764 577778877777777889999999999998887 344 456667777888889999
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038606 482 LALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRML 561 (666)
Q Consensus 482 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (666)
.|...|..-.+. .|..+..|..+...-.+.|.+-.|..++++..-.+. -+...|...|.+-.+.|+.+.|..+..+++
T Consensus 703 ~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 703 MAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988877665 455667788887777888899999999999988753 367789999999999999999999999999
Q ss_pred hcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 038606 562 EKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMF 641 (666)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 641 (666)
+..+ .+...|..-|....+.++-..+...+++. .-|++....+...+....+++.|.++|.+..+.+ +-...
T Consensus 781 Qecp--~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD 852 (913)
T KOG0495|consen 781 QECP--SSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGD 852 (913)
T ss_pred HhCC--ccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Cccch
Confidence 8876 55567777777777777766655555544 4477788888888888899999999999999764 44468
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhh
Q 038606 642 VFVALISAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~~ 665 (666)
+|..+...+...|.-++-.+++++
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 888888888999987777776653
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=1.3e-16 Score=149.65 Aligned_cols=524 Identities=11% Similarity=0.009 Sum_probs=386.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 038606 45 LVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVF 124 (666)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 124 (666)
+...=.+++..++++- |.+...|...+ ...+.+.|+.++.++.+.= +.+.. |..+|.+..-|+.|..++
T Consensus 361 ~~~~K~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvL 429 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHH
Confidence 4444455666666654 44444444333 3445566777777777642 21222 333455666777777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHh----hCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCC
Q 038606 125 NEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMD----DCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSG 200 (666)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (666)
+++.+.-|.++.+|..-...--.+|+.+....+..+.+ ..|+..+...|..=...+-+.|..-.+..+...+...|
T Consensus 430 NkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigig 509 (913)
T KOG0495|consen 430 NKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIG 509 (913)
T ss_pred HHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhc
Confidence 77777777777777777777777777777777765543 34556666666666666767777777777777766655
Q ss_pred CCcc--HHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHH
Q 038606 201 FASD--AAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNS 278 (666)
Q Consensus 201 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (666)
+... ..+|..-.+.|.+.+.++-|..+|...++. .|.. ...|..
T Consensus 510 vEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k--------------------------------~slWlr 555 (913)
T KOG0495|consen 510 VEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCK--------------------------------KSLWLR 555 (913)
T ss_pred cccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccch--------------------------------hHHHHH
Confidence 4322 346777777777777777777777777652 3322 366777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038606 279 IMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQN 358 (666)
Q Consensus 279 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (666)
....--..|..+.-..++++..... |.....|.+....+-..|++..|..++..+.+.. +.+
T Consensus 556 a~~~ek~hgt~Esl~Allqkav~~~-----------------pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 556 AAMFEKSHGTRESLEALLQKAVEQC-----------------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-----------------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 7777777888999999999988875 6677778888888888999999999999998876 457
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 038606 359 VFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKE 438 (666)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 438 (666)
...|-..+..-..+.++++|..+|.+.... .|+..+|.--+..---.++.++|.+++++.++. ++.-...|..+.+.
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 788888888888999999999999988775 678888877777777788999999999888875 35566778888889
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHH
Q 038606 439 LCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEA 518 (666)
Q Consensus 439 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 518 (666)
+.+.++.+.|...|..-.+. ++..+..|..+...--+.|.+-.|..++++..-.+ |.+...|...+..-.+.|..+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHH
Confidence 99999999998888876665 34445566666676677889999999999988765 66888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 519 EDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
..+..+.++. ++.+...|..-|....+.++-..+...+++. .-|++....+...+.....+++|.+.|.+...
T Consensus 773 ~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 773 ELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998886 4556667877777777777765555555544 24666777888888899999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHH
Q 038606 599 KGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDM-FVFVAL 646 (666)
Q Consensus 599 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l 646 (666)
.+ +.+..+|..+...+.++|.-++-.+++.+.... .|.. ..|..+
T Consensus 846 ~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 846 KD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred cC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 64 445788888888889999988888998888754 4543 444443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=5.6e-18 Score=174.26 Aligned_cols=448 Identities=13% Similarity=0.030 Sum_probs=296.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|..+.+...-+-...+.|+++.|+..|+++++.++...+.++ .++..+...|+.++|+..+++.....+.+......++
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 445556666677788999999999999999987654222333 7888888999999999999999944444444555557
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChh
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLE 222 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 222 (666)
..+...|++++|+++|+++.+.++. +...+..++..+...++.++|++.++++.+. .|+...+..++..+...++..
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 7999999999999999999998744 5677778888899999999999999999877 466666655555555567777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038606 223 MALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKG 302 (666)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 302 (666)
+|++.++++.+.. |+.. ..+..+...+.+.|-...|.++.+.-...
T Consensus 187 ~AL~~~ekll~~~--P~n~--------------------------------e~~~~~~~~l~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 187 DALQASSEAVRLA--PTSE--------------------------------EVLKNHLEILQRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHHHHHHHHhC--CCCH--------------------------------HHHHHHHHHHHHcCCcHHHHHHHHhCccc
Confidence 7999999999863 5421 33344445555555555555554432211
Q ss_pred CCCCchhHHHHHhhcCCCCCCHHH------HHHHHHHH-----HhcC---ChHHHHHHHHHHHHcC--CCCCHHHH----
Q 038606 303 EPIADVGVEMLMIFKGTVSPNTSS------FDIIINTL-----LKDG---KLDLALSLFREMTQIG--CMQNVFLY---- 362 (666)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~-----~~~g---~~~~a~~~~~~~~~~~--~~~~~~~~---- 362 (666)
. .+.... ....++.- .... -.+.|+.-++.+...- .|+....|
T Consensus 233 f-----------------~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~ 295 (822)
T PRK14574 233 V-----------------SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR 295 (822)
T ss_pred c-----------------CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH
Confidence 1 000000 00000000 0011 2344555556555421 12221222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCchhhHHHHHH
Q 038606 363 NNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGH-----EPWVKHNTLLIK 437 (666)
Q Consensus 363 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~ 437 (666)
.-.+-++...|++.++++.|+.|...+.+....+-..+..+|...+.+++|..+++.+..... +++......|..
T Consensus 296 ~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 296 IDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 234556778899999999999998887665566778889999999999999999998876531 223333467788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-----------CCCh---hhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHH
Q 038606 438 ELCKHGKAMEAFRFLTDMVQEGF-----------LPDI---VCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYN 503 (666)
Q Consensus 438 ~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 503 (666)
++...+++++|..+++.+.+... .|++ .....++..+...|++.+|++.++.+... -|-|.....
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~ 454 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRI 454 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHH
Confidence 88889999999999998887421 1111 12233455566667777777777777655 255666666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCC
Q 038606 504 IIISGLCKAQRVAEAEDLFNEMITKGLIP-SVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSP 568 (666)
Q Consensus 504 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (666)
.+.+.+...|.+.+|+..++..... .| +..+....+.++...|++++|..+.+.+.+..|..+
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 6777777777777777777555543 33 344555566666666777777777777666655333
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.3e-14 Score=131.18 Aligned_cols=499 Identities=9% Similarity=0.018 Sum_probs=360.1
Q ss_pred hHHHHHHHHhhhh----cCCCcchH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038606 13 PLRVLAQDVVKSR----CFMSPGAL-GFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEM 87 (666)
Q Consensus 13 ~~~~~~~~~~~~~----~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 87 (666)
.|++++.++...+ +||...+- ..=++-|.... .+-|+.-++.+ .-+...|..-++--..++++..|+.
T Consensus 22 tAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~Rk-----RkefEd~irrn--R~~~~~WikYaqwEesq~e~~RARS 94 (677)
T KOG1915|consen 22 TAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRK-----RKEFEDQIRRN--RLNMQVWIKYAQWEESQKEIQRARS 94 (677)
T ss_pred cHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4677777776654 22222221 12223333222 34566666655 4677788888888888999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 038606 88 RLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIR 167 (666)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (666)
+|++++..+.. +...|...+.+-.++.....|..+++.+...-|.-...|...+..--..|++..|.++|++-.+. .
T Consensus 95 v~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~ 171 (677)
T KOG1915|consen 95 VFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--E 171 (677)
T ss_pred HHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--C
Confidence 99999987654 78889999999999999999999999999987766678888888888999999999999999986 7
Q ss_pred cchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038606 168 LNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLI 247 (666)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 247 (666)
|+...|++.+..-.+.+..+.|..++++..-. +|++.+|--.+..=-+.|+...+..+|+.+... -.|.....
T Consensus 172 P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e--- 244 (677)
T KOG1915|consen 172 PDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAE--- 244 (677)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHH---
Confidence 89999999999999999999999999998765 799999999888888999999999999998763 11211111
Q ss_pred HhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCC--HH
Q 038606 248 TSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPN--TS 325 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 325 (666)
..+.+....-..+..++.|.-+|+-.++.- |.+ ..
T Consensus 245 --------------------------~lfvaFA~fEe~qkE~ERar~iykyAld~~-----------------pk~raee 281 (677)
T KOG1915|consen 245 --------------------------ILFVAFAEFEERQKEYERARFIYKYALDHI-----------------PKGRAEE 281 (677)
T ss_pred --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------CcccHHH
Confidence 334444455556778888888898888764 333 44
Q ss_pred HHHHHHHHHHhcCChHHHHHH--------HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--
Q 038606 326 SFDIIINTLLKDGKLDLALSL--------FREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHF-- 395 (666)
Q Consensus 326 ~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 395 (666)
.|..+...--+-|+.....+. ++...+.+ +-|-.+|-..++.-...|+.+...++|++.... ++|-..
T Consensus 282 L~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr 359 (677)
T KOG1915|consen 282 LYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKR 359 (677)
T ss_pred HHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHH
Confidence 555555555556665544433 33444444 567788888888888889999999999998865 455321
Q ss_pred HHHHHHH--------HHHhcCCHHHHHHHHHHHHHcCCCCchhhHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038606 396 TLNSMFR--------CLCRRQDVVGALNLVRKMRVQGHEPWVKHNT----LLIKELCKHGKAMEAFRFLTDMVQEGFLPD 463 (666)
Q Consensus 396 ~~~~l~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 463 (666)
.|...+. .-....|.+.+.++++..++. +|....++. .......++.+...|.+++-..... .|.
T Consensus 360 ~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK 436 (677)
T KOG1915|consen 360 YWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCc
Confidence 2222221 123467888888888888773 344444443 3344455677888888888877654 678
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHH
Q 038606 464 IVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGL-IPSVATYNLLIN 542 (666)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~ 542 (666)
..++...|..-.+.++++.+..+|+..+..+ |.+..+|......-...|+.+.|..+|+-.+.... ......|.+.|+
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYId 515 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYID 515 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhh
Confidence 8888888888888888999999988888874 56777888877777778888888888888877521 112234555566
Q ss_pred HHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHH
Q 038606 543 GWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGL 580 (666)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (666)
.-...|.++.|..+++++++... ....|..+...-
T Consensus 516 FEi~~~E~ekaR~LYerlL~rt~---h~kvWisFA~fe 550 (677)
T KOG1915|consen 516 FEIEEGEFEKARALYERLLDRTQ---HVKVWISFAKFE 550 (677)
T ss_pred hhhhcchHHHHHHHHHHHHHhcc---cchHHHhHHHHh
Confidence 66678888888888888887743 444666655443
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.2e-16 Score=143.35 Aligned_cols=479 Identities=12% Similarity=0.044 Sum_probs=255.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH-HHHHHHHhcCChhHHHHHHHHHHHcCCC-C----chHHHHH
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT-PLLQVYCNSGQFDKALSVFNEIIDHGWV-D----EHVFSIL 141 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~~l 141 (666)
....|.+.|..+..+.+|...|+.+++...-|+...+. .+...+++..++.+|++.|.-++..-|. + ..+.+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 45556677778888889999999888877666665443 4557788888899999988877766542 2 2244555
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHH------------HHH
Q 038606 142 LVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAA------------MYD 209 (666)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~ 209 (666)
+..+.+.|+++.|+..|+...+. .|+..+-..|+-.+.--|+-++..+.|.+|...-..+|.. ..+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 66778888888888888888776 4565554445555556788888888888876532222222 111
Q ss_pred HHH-----HhhhccCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHH
Q 038606 210 VII-----GGLCKNKQ--LEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRI 282 (666)
Q Consensus 210 ~l~-----~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (666)
.-+ .-.-+.++ .+++.-.--++..--+.|+...
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~---------------------------------------- 400 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA---------------------------------------- 400 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc----------------------------------------
Confidence 111 11111110 0111111111111111111100
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038606 283 LVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLY 362 (666)
Q Consensus 283 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (666)
-.+-.++.++.-... +.-...-..-...+.+.|+++.|.++++-..+..-..-...-
T Consensus 401 -----g~dwcle~lk~s~~~------------------~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa 457 (840)
T KOG2003|consen 401 -----GCDWCLESLKASQHA------------------ELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAA 457 (840)
T ss_pred -----ccHHHHHHHHHhhhh------------------hhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHh
Confidence 001111111111000 000000001122345566666666666555443221112222
Q ss_pred HHHHHHHH-h-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 038606 363 NNLIDGLC-N-SNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELC 440 (666)
Q Consensus 363 ~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 440 (666)
+.|...+. + -.++..|.++-+...... +-+......-.......|+++.|.+.+++.+..+..-. .....+.-.+.
T Consensus 458 ~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e 535 (840)
T KOG2003|consen 458 NNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAE 535 (840)
T ss_pred hhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHH
Confidence 22222221 1 223455555544444332 22333333333333445666666666666654431111 11112223445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHH
Q 038606 441 KHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAED 520 (666)
Q Consensus 441 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 520 (666)
..|+.++|+..|-++... +..+...+..+...|-...+...|++++.+.... ++.|+...+.+...|-+.|+-..|.+
T Consensus 536 ~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhh
Confidence 566666666666554432 1235555666666666677777777777666554 56667777777777777777777766
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHH-HHcCChhHHHHHHHHHHHc
Q 038606 521 LFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGL-CIAGRPDDAIMLWNEMEEK 599 (666)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~ 599 (666)
.+-+--+- ++.+..+...|...|....-+++++.+|++..-. .|+..-|..++..| .+.|++++|.++++...+.
T Consensus 614 ~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 614 CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 65444333 4445666666666666666677777777765433 56777777666544 3457777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHccCC
Q 038606 600 GCAPNRITFMALITGLCKCDR 620 (666)
Q Consensus 600 ~~~p~~~~~~~l~~~~~~~g~ 620 (666)
++.|..++..|++.+...|.
T Consensus 690 -fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 -FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred -CccchHHHHHHHHHhccccc
Confidence 56667777777776665553
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=1e-15 Score=137.44 Aligned_cols=494 Identities=14% Similarity=0.066 Sum_probs=322.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-Cch-HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchh----hHHH
Q 038606 102 YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV-DEH-VFSILLVAFSKWGEVDKACELIERMDDCNIRLNEK----TFCV 175 (666)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ 175 (666)
.++..|.+-|..+..+.+|+..|+-+.+.... +.. .-..++..+.+..++.+|++.++..+..-+..+.. ..+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34445666777778889999999988776542 222 23456778899999999999999888763333333 3444
Q ss_pred HHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCc
Q 038606 176 LIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGE 255 (666)
Q Consensus 176 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 255 (666)
+...+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|...-..||..-| .+.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~-- 350 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKE-- 350 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCC--
Confidence 445688999999999999998877 577776666666777789999999999999876545554111 100
Q ss_pred HHHHHHHHHhhCCCCCccchHHHHH-----HHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHH
Q 038606 256 LTLLVKEIWEDRDVNTMTLLCNSIM-----RILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDII 330 (666)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (666)
...|+....+..+ +-.-+.. -..|.+.+-...+.- ..-+.|+...
T Consensus 351 ------------~ddp~~~ll~eai~nd~lk~~ek~~-ka~aek~i~ta~kii-------------apvi~~~fa~---- 400 (840)
T KOG2003|consen 351 ------------KDDPDDNLLNEAIKNDHLKNMEKEN-KADAEKAIITAAKII-------------APVIAPDFAA---- 400 (840)
T ss_pred ------------cCCcchHHHHHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHh-------------ccccccchhc----
Confidence 1111112222111 1111111 111111111111100 0001222111
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH-hcC
Q 038606 331 INTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRC-LC-RRQ 408 (666)
Q Consensus 331 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~-~~~ 408 (666)
+ .+-+++.++.-.-..+..+.. ..-...+.++|+++.|.++++-+.+..-..-...-+.+... |. .-.
T Consensus 401 --g------~dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk 470 (840)
T KOG2003|consen 401 --G------CDWCLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGK 470 (840)
T ss_pred --c------cHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhccc
Confidence 0 011111111110000000100 01123477899999999999988765433222223333222 22 244
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHH
Q 038606 409 DVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFR 488 (666)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 488 (666)
++..|.++-+.....+ ..+......-......+|++++|...|++.+..+.......|+ +.-.+-..|++++|++.|-
T Consensus 471 ~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 471 DFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFL 548 (840)
T ss_pred chhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHH
Confidence 7788888777766443 2233333333344456799999999999998764222222232 3334567899999999998
Q ss_pred HHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCC
Q 038606 489 DICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSP 568 (666)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 568 (666)
.+... +..+..+...+.+.|....+...|++++.+.... ++.|+.++.-|...|-+.|+-..|.+++-.-.+-.| .
T Consensus 549 klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp--~ 624 (840)
T KOG2003|consen 549 KLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP--C 624 (840)
T ss_pred HHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC--c
Confidence 87664 3457778888899999999999999999988775 566788999999999999999999998876665555 5
Q ss_pred CHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038606 569 DVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLC-KCDRPRAALVHFRMMKEKGMKPDMFVFVALI 647 (666)
Q Consensus 569 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 647 (666)
+..+...|..-|....-+++|+.+|++..- +.|+..-|..++..|. +.|++..|+.+|+...++ +|.|..++..|+
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 667777788888899999999999999865 6899999998886655 789999999999998765 688999999999
Q ss_pred HHHHhcCC
Q 038606 648 SAFLSELN 655 (666)
Q Consensus 648 ~~~~~~g~ 655 (666)
+.+...|-
T Consensus 702 ri~~dlgl 709 (840)
T KOG2003|consen 702 RIAGDLGL 709 (840)
T ss_pred HHhccccc
Confidence 99887774
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.4e-14 Score=128.54 Aligned_cols=454 Identities=11% Similarity=0.037 Sum_probs=343.2
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
.....+-..++-=..++++..|..+|++++..+ ..+...|..-+.+-.++..+..|+.++++++..=|.. ...|...
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHH
Confidence 344556667777778899999999999999987 5789999999999999999999999999998864443 3456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
+.+--..|+...|.++|++-.+..| +..+|.+.+..-.+...++.|..++++.+-. .|++.+|...+..-.++|+..
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 6666778999999999999998876 6789999999999999999999999999875 689999999999889999999
Q ss_pred HHHHHHHHHHhC-CC-CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHh
Q 038606 188 KALQLFDKMTKS-GF-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWE 265 (666)
Q Consensus 188 ~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 265 (666)
.|..+|+...+. |- ..+...+.+....=.++..++.|..+|+-.+..- |...+
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~--pk~ra----------------------- 279 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI--PKGRA----------------------- 279 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcccH-----------------------
Confidence 999999998764 10 1123345555555556788899999998887752 32211
Q ss_pred hCCCCCccchHHHHHHHHHhcCCHHHHHHH--------HHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhc
Q 038606 266 DRDVNTMTLLCNSIMRILVSNGSIDQAYNL--------LQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKD 337 (666)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 337 (666)
...+......--+.|+.....+. |+.+...+ |-|-.+|-..++.-...
T Consensus 280 -------eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-----------------p~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 280 -------EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-----------------PYNYDSWFDYLRLEESV 335 (677)
T ss_pred -------HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-----------------CCCchHHHHHHHHHHhc
Confidence 01222222222233443333322 34555555 77888999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH----H
Q 038606 338 GKLDLALSLFREMTQIGCMQNV--FLYNNLI--------DGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFR----C 403 (666)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~ 403 (666)
|+.+...++|+++...- ||-. ..|.-.| -.-....+.+.+.++|+..++. +|....|+.-+-- .
T Consensus 336 g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHH
Confidence 99999999999998754 4421 1222222 1123478899999999999885 5556666654433 3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 038606 404 LCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLA 483 (666)
Q Consensus 404 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 483 (666)
-.++.++..|.+++...+ |.-|...++...|..-.+.++++....++++.+.-+ +-+-.++......-...|+.+.|
T Consensus 414 eIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHH
Confidence 457889999999998876 457888899999999999999999999999999875 34667777777777789999999
Q ss_pred HHHHHHHHhcC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038606 484 LELFRDICAHG-CCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLING 543 (666)
Q Consensus 484 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 543 (666)
..+|+-.+... .......|.+.|..-...|.++.|..+++++++. .+...+|.++...
T Consensus 491 RaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 491 RAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHH
Confidence 99999988653 2233557778888888899999999999999986 3344466666543
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.4e-13 Score=122.97 Aligned_cols=454 Identities=15% Similarity=0.149 Sum_probs=287.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH--hcCChhHH-HHH--------------------H
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC--NSGQFDKA-LSV--------------------F 124 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A-~~~--------------------~ 124 (666)
+=+.|+.. ..+|.+..+.-+|+.|...|.+.++.+...|...-+ .+.+.--| .+. -
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 34444443 456778888888888888777766666555543322 11111100 001 1
Q ss_pred HHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc
Q 038606 125 NEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASD 204 (666)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 204 (666)
+-+.+.-|..+.++..++.+.++.-..+.|.+++++......+.+..+||.+|.+-.-. .-.+++.+|....+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCc
Confidence 11222334467789999999999999999999999998888889999999999764432 22788999999889999
Q ss_pred HHHHHHHHHhhhccCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHH----HHHHHHh---hCC----C
Q 038606 205 AAMYDVIIGGLCKNKQLEM----ALQLYSEMKGSGITPDFEILSKLITSCSDEGELTL----LVKEIWE---DRD----V 269 (666)
Q Consensus 205 ~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----~~~~~~~---~~~----~ 269 (666)
..|+|.++++..+.|+++. |.+++.+|++.|+.|...+|.-++..+.+.++..+ .+.++.. +.. .
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998875 56788999999999999999999999999888752 2222211 111 2
Q ss_pred CCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCC---HHHHHHHHHHHHhcCChHHHHHH
Q 038606 270 NTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPN---TSSFDIIINTLLKDGKLDLALSL 346 (666)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 346 (666)
..+...+...+..+.+..+.+-|.++..-+.....-. -++|+ ..-|..+....++....+.-..+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~------------~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK------------FIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh------------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344556677788889999999998877665443111 01332 23456677788888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 038606 347 FREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHE 426 (666)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 426 (666)
|+.+.-.-.-|+..+...++++....+.++-.-+++..+...|-..+......++..+++.. ..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~h 484 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LH 484 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CC
Confidence 99998877778888888999999999999999999999887764333333333333333222 11
Q ss_pred Cchh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcC-C---CccH
Q 038606 427 PWVK---HNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHG-C---CPDV 499 (666)
Q Consensus 427 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~---~~~~ 499 (666)
|... -+.....-+. ..-.+.....-.++.+. ..+....+.++..+.+.|..++|.+++.-+.+.+ - .|..
T Consensus 485 p~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~l 561 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLL 561 (625)
T ss_pred CCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcch
Confidence 2111 1111111000 00011111122233333 3344555666666777788888887777764322 1 2233
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 038606 500 VAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCL 557 (666)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (666)
....-+++.-.+......|...++-+...+.+.-...-+.+...|.-+..-.+++.-|
T Consensus 562 nAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 562 NAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 3333455555666777777777777766543322223344444444433333444333
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=1.9e-13 Score=122.23 Aligned_cols=242 Identities=19% Similarity=0.292 Sum_probs=183.3
Q ss_pred CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHH
Q 038606 202 ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMR 281 (666)
Q Consensus 202 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 281 (666)
|.+..+|..||.++++--..+.|.++|++......+.+..+++.++.+.+
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S------------------------------ 253 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS------------------------------ 253 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH------------------------------
Confidence 55678899999999999999999999999888767778877776665432
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHHcCCCC
Q 038606 282 ILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLA----LSLFREMTQIGCMQ 357 (666)
Q Consensus 282 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~ 357 (666)
+....++...|.... +.||..++|+++.+..+.|+++.| .+++.+|++.|+.|
T Consensus 254 -------~~~~K~Lv~EMisqk----------------m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 254 -------YSVGKKLVAEMISQK----------------MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP 310 (625)
T ss_pred -------hhccHHHHHHHHHhh----------------cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc
Confidence 122256666666654 489999999999999999988764 56788899999999
Q ss_pred CHHHHHHHHHHHHhcCChhH-HHHHHHHHHhC----C---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----
Q 038606 358 NVFLYNNLIDGLCNSNRLEE-SYELLREMEES----G---FKP-THFTLNSMFRCLCRRQDVVGALNLVRKMRVQG---- 424 (666)
Q Consensus 358 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 424 (666)
...+|..+|..+.+.++..+ +..++.++... . +.| |...|...+..|.+..|.+.|.++..-+....
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 99999999999888877644 44455554322 1 222 45567788888889999999988877665431
Q ss_pred CCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCC
Q 038606 425 HEPW---VKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCC 496 (666)
Q Consensus 425 ~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 496 (666)
++++ ..-|..+....++....+.....|+.|.-.-+-|+..+...++.+....+.++-.-+++..+...|..
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 1222 22355667777888888999999999988777788888888888888888888888888888776533
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=9.9e-15 Score=141.61 Aligned_cols=285 Identities=12% Similarity=0.100 Sum_probs=202.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCL-LEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKAL 121 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 121 (666)
.|+++.|.+......+.. +++..+..+ ..+..+.|+++.|..+|.++.+..+.+...........+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 689999998888776643 334444444 4555889999999999999987533322222223366778889999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcch-------hhHHHHHHhhhccCCHHHHHHHHH
Q 038606 122 SVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE-------KTFCVLIHGFVKKSRVDKALQLFD 194 (666)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 194 (666)
..++++.+.+|.++.+...+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999988999999999999999999999999999887543222 122333333334445566666666
Q ss_pred HHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccc
Q 038606 195 KMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTL 274 (666)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (666)
.+.+.- +.++.....+...+...|+.++|..++++..+. .|+..
T Consensus 254 ~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--------------------------------- 297 (398)
T PRK10747 254 NQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--------------------------------- 297 (398)
T ss_pred hCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH---------------------------------
Confidence 654432 456777788888888888888888888888774 33331
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038606 275 LCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG 354 (666)
Q Consensus 275 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 354 (666)
..++......++.+++++..+...+.. |.|...+..+...+.+.+++++|.+.|+...+..
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~~-----------------P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQH-----------------GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhhC-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 112233345577888888888887766 6666777777888888888888888888877754
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 355 CMQNVFLYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 355 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
|+...+..+...+.+.|+.++|.+++++-..
T Consensus 359 --P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 --PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777777777888888888888887776643
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.75 E-value=1.4e-11 Score=116.24 Aligned_cols=565 Identities=11% Similarity=0.074 Sum_probs=254.9
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
-|.++...+..+.++|+...-+..|++++..-++......|...+...-..|-++-+..+|++.++. ++..-...+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyi 176 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYI 176 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHH
Confidence 4556666667777777777777777777766533344556777777777777777777777777764 233355566
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC-------CCCchHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCcchhhHHHHHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHG-------WVDEHVFSILLVAFSKWGE---VDKACELIERMDDCNIRLNEKTFCVLIH 178 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 178 (666)
..+.+.+++++|.+.+..+...+ +.+...|..+-....+.-+ --....++..+..+-..-=...|.+|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 66677777777777777665432 2334455555554444432 2223334444443311111245677777
Q ss_pred hhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHhhhccCcHH
Q 038606 179 GFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITP-DFEILSKLITSCSDEGELT 257 (666)
Q Consensus 179 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~ 257 (666)
-|.+.|.+++|..+|++.... ..++.-|..+..+|+......-+..+ +...+.+..+ +...+..-+..+...-+..
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 777777777777777776543 23444455555555432211111100 0000011111 1111111111100000000
Q ss_pred -HHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHh
Q 038606 258 -LLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLK 336 (666)
Q Consensus 258 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 336 (666)
.......- .....+...|.. +.-+..|+..+-...|....+.-.+.. .+-.-...|..+...|-.
T Consensus 334 ~~~lNsVlL-RQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~k-----------a~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 334 PLLLNSVLL-RQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKK-----------AVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred chHHHHHHH-hcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCccc-----------CCCChhhHHHHHHHHHHh
Confidence 00000000 000111112222 222334556666666666554431100 001122346677777778
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----------------CHHH
Q 038606 337 DGKLDLALSLFREMTQIGCMQN---VFLYNNLIDGLCNSNRLEESYELLREMEESGFKP-----------------THFT 396 (666)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~ 396 (666)
.|+++.|..+|++..+...+.- ..+|..-..+-.+..+++.|+++++......-.| +...
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki 479 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI 479 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence 8888888888887776543222 2334444444445666777777776654321110 0112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 038606 397 LNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDI-VCYSAAIGGLI 475 (666)
Q Consensus 397 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 475 (666)
|...+..--..|-++....+++++++..+. ++.........+..+.-++++.++|++-...=..|+. ..|+..+.-+.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi 558 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI 558 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence 222233333344555555555555544322 1111112222233334445555555443332112222 23333333332
Q ss_pred c---cCChHHHHHHHHHHHhcCCCccHHHHHHHH--HHHHccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccC
Q 038606 476 D---IKRVDLALELFRDICAHGCCPDVVAYNIII--SGLCKAQRVAEAEDLFNEMITKGLIPSV--ATYNLLINGWCKSG 548 (666)
Q Consensus 476 ~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g 548 (666)
+ ...++.|..+|++..+ |.+|...-+-.++ ..-.+.|....|..++++.... +++.. ..|+..|.--...-
T Consensus 559 ~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~y 636 (835)
T KOG2047|consen 559 KRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIY 636 (835)
T ss_pred HHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHh
Confidence 2 2345555555555555 3333322111111 1111234455555555554432 22221 23444433222222
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHh---HHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCC
Q 038606 549 NIDQAMLCLSRMLEKESGSPDVIT---YTTLIDGLCIAGRPDDAIMLWNEMEEK-GCAPNRITFMALITGLCKCDR 620 (666)
Q Consensus 549 ~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~ 620 (666)
-+.....+|+++++.- |+... .......-.+.|..+.|..++.-..+. ..+.+...|.+.=..=.++|+
T Consensus 637 Gv~~TR~iYekaIe~L---p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 637 GVPRTREIYEKAIESL---PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred CCcccHHHHHHHHHhC---ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 3334455555555542 22221 122233334455555555555554442 112234444444444445555
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=7.7e-15 Score=143.33 Aligned_cols=297 Identities=10% Similarity=0.050 Sum_probs=202.5
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQF 117 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (666)
......|+++.|.+.+....+.. |.+...+...+.++.+.|+++.|.++++++.+..+.+...........+...|++
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 34455789999999998888765 3334455566788888999999999999987754332223444457778889999
Q ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHH-HHHH---hhhccCCHHHHHHHH
Q 038606 118 DKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFC-VLIH---GFVKKSRVDKALQLF 193 (666)
Q Consensus 118 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~A~~~~ 193 (666)
+.|.+.++.+.+..|.++.++..++.++...|++++|.+.+..+.+.++. +...+. .-.. .....+..+++.+.+
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999999989999999999999999999999999999887643 222221 1111 112233333334455
Q ss_pred HHHHhCCC---CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCC
Q 038606 194 DKMTKSGF---ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVN 270 (666)
Q Consensus 194 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 270 (666)
..+.+... +.+...+..++..+...|+.++|.+++++..+.. ||....
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~--------------------------- 299 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAI--------------------------- 299 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccc---------------------------
Confidence 55544321 1377788888888999999999999999888753 443100
Q ss_pred CccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHH
Q 038606 271 TMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNT--SSFDIIINTLLKDGKLDLALSLFR 348 (666)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~ 348 (666)
.............++.+.+.+.++...+.. |.|. ....++...+.+.|++++|.+.|+
T Consensus 300 ---~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-----------------p~~~~~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 300 ---SLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-----------------DDKPKCCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred ---hhHHHHHhhhcCCCChHHHHHHHHHHHHhC-----------------CCChhHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000111112233456677777777777665 4455 566677788888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 349 EMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREME 386 (666)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 386 (666)
........|+...+..+...+.+.|+.++|.+++++..
T Consensus 360 ~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 360 NVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54433345777777778888888888888888887653
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=1.3e-15 Score=144.06 Aligned_cols=286 Identities=15% Similarity=0.058 Sum_probs=194.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHHHH
Q 038606 45 LVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG--YDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
+..+|..+|+.+.... +...-....++.+|...+++++|.++|+.+.+..+- .+..+|.+.+- +..+--+---
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW---HLq~~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW---HLQDEVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH---HHHhhHHHHH
Confidence 4567788887755443 344455566777788888888888888877665322 13445554432 1122222222
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCC
Q 038606 123 VFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFA 202 (666)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 202 (666)
+-+.+.+.++..|.+|.+++.+|.-+++.+.|++.|+++++.+ +....+|+.+.+-+....++|.|...|...+... +
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence 3345566677778888888888888888888888888888765 2256777777777777888888888888777433 3
Q ss_pred ccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHH
Q 038606 203 SDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRI 282 (666)
Q Consensus 203 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (666)
.+-..|..+...|.++++++.|+--|+++.+. .|... .....++..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~ns--------------------------------vi~~~~g~~ 532 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNS--------------------------------VILCHIGRI 532 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcC--Cccch--------------------------------hHHhhhhHH
Confidence 33445555677788888888888888887763 34331 344556667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038606 283 LVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLY 362 (666)
Q Consensus 283 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (666)
+.+.|+.++|++++++....+ +.|+..-...+..+...++.++|+..++++++.- +.+...|
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld-----------------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~ 594 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLD-----------------PKNPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVF 594 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcC-----------------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHH
Confidence 777788888888888887776 6677776677777777888888888888887754 4556667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038606 363 NNLIDGLCNSNRLEESYELLREMEESG 389 (666)
Q Consensus 363 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 389 (666)
..+...|.+.|+.+.|+..|.-+.+..
T Consensus 595 ~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 595 ALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 777788888888888888887776653
No 41
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.8e-13 Score=116.16 Aligned_cols=452 Identities=13% Similarity=0.084 Sum_probs=239.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHH
Q 038606 77 CKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACE 156 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (666)
....++..|+.+++--...+-+-...+-.-+..++.+.|++++|..+++.+...+..+...+..++.++.-.|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34445555555554443322221112222334455555666666666665555444444555555555555566666655
Q ss_pred HHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCC
Q 038606 157 LIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGI 236 (666)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 236 (666)
+-.+..+ ++-....+.+...+.|+-++-..+.+.+... ...-.+|.....-.-.+.+|.++|.+....+
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn- 181 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN- 181 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 5444433 2222333344444555555555554444421 1222233333333345666666666666531
Q ss_pred CCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhh
Q 038606 237 TPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIF 316 (666)
Q Consensus 237 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 316 (666)
|+... .-..+.-+|.+..-++-+.++++-..+..
T Consensus 182 -~ey~a--------------------------------lNVy~ALCyyKlDYydvsqevl~vYL~q~------------- 215 (557)
T KOG3785|consen 182 -PEYIA--------------------------------LNVYMALCYYKLDYYDVSQEVLKVYLRQF------------- 215 (557)
T ss_pred -hhhhh--------------------------------hHHHHHHHHHhcchhhhHHHHHHHHHHhC-------------
Confidence 22211 11122334555555666666666555543
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCC
Q 038606 317 KGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCN-----SNRLEESYELLREMEESGFK 391 (666)
Q Consensus 317 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~ 391 (666)
+.++.+.|.......+.=+-..|.+-.+.+...+-.. |. .+.-.++ -.+-+.|++++-.+.+. .
T Consensus 216 ----pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--I 284 (557)
T KOG3785|consen 216 ----PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--I 284 (557)
T ss_pred ----CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--C
Confidence 4445555544444433333333444444444322111 11 1111222 23446777777766654 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCh
Q 038606 392 PTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHG-------KAMEAFRFLTDMVQEGFLPDI 464 (666)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~ 464 (666)
|. .-..++--|.+.++..+|..+.+++. |.++.-|-.-.......| ...-|.+.|+-.-+++...|.
T Consensus 285 PE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDT 358 (557)
T KOG3785|consen 285 PE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDT 358 (557)
T ss_pred hH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccc
Confidence 32 22345555778888888887776653 222222222112222222 244455666655555544443
Q ss_pred h-hHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 038606 465 V-CYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYN-LLIN 542 (666)
Q Consensus 465 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~ 542 (666)
. .-..+..++.-..++++++..+..+...-...|...+| +..+++..|.+.+|+++|-.+....++ +..+|. .+.+
T Consensus 359 IpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LAr 436 (557)
T KOG3785|consen 359 IPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLAR 436 (557)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHH
Confidence 2 33455566666778888888888887764444555554 667888889999999999887655444 445554 4567
Q ss_pred HHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038606 543 GWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFM 609 (666)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 609 (666)
+|.++++++.|++++-++... .........+..-|.+.+.+--|.+.|+.+... .|++..|.
T Consensus 437 Cyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 437 CYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 889999999988887554321 112233445566788888888888888888764 56766663
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.9e-13 Score=121.62 Aligned_cols=305 Identities=14% Similarity=0.084 Sum_probs=142.0
Q ss_pred hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHH-----------------------------
Q 038606 25 RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEA----------------------------- 75 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~----------------------------- 75 (666)
++..++-.+...+..+.+.|....|+..|....... |-+=.+|..|...
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 344455556677788888999999999998887654 3344444444332
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHH
Q 038606 76 LCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKAC 155 (666)
Q Consensus 76 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (666)
+-...+.+++..-++.....|++.+...-+....+.-.+.++++|+.+|+++.+.+|..-+-......++.-..+-.+.-
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 22223344444444444444444333333333333444455555555555555554422211111111111111101100
Q ss_pred HHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 156 ELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
-+-......+ +..+.|...+.+-|+-.++.++|...|++..+.+ |.....|+.+.+-|....+...|.+.|+.+++.
T Consensus 317 ~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi- 393 (559)
T KOG1155|consen 317 YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI- 393 (559)
T ss_pred HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-
Confidence 1111111111 1123334444444444555555555555555444 333444555555555555555555555555442
Q ss_pred CCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHh
Q 038606 236 ITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMI 315 (666)
Q Consensus 236 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 315 (666)
.|.. -.+|..+.++|.-.+.+.-|+-.|++.....
T Consensus 394 -~p~D--------------------------------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k------------ 428 (559)
T KOG1155|consen 394 -NPRD--------------------------------YRAWYGLGQAYEIMKMHFYALYYFQKALELK------------ 428 (559)
T ss_pred -Cchh--------------------------------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC------------
Confidence 2211 1445555555555555555555555554443
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 316 FKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREM 385 (666)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 385 (666)
|.|...|.+|..+|.+.++.++|+..|......| ..+...+..|...|-+.++.++|...|.+-
T Consensus 429 -----PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 429 -----PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred -----CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455555555555555555555555555554443 223344445555555555555555544443
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.4e-12 Score=116.58 Aligned_cols=389 Identities=13% Similarity=0.126 Sum_probs=246.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHH---------------HhcCChhHHHHHHHH----H-
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEAL---------------CKSCSVDLVEMRLKE----M- 92 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---------------~~~g~~~~A~~~~~~----~- 92 (666)
...+++.|.....++.|.-.++..... .+ .|..+..-+ ...+.+..-...|.. +
T Consensus 81 ~y~laks~fd~kEf~Raa~fL~~~~s~----k~--~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~~le 154 (559)
T KOG1155|consen 81 IYLLAKSYFDCKEFERAAFFLQNCKSK----KS--AFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNKPLE 154 (559)
T ss_pred hhhhHhhhhhhHHHHHHHHHHHhcchH----HH--HHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhhHHH
Confidence 456888899888888888877766531 11 111111111 111222222222211 1
Q ss_pred -HhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchh
Q 038606 93 -QDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEK 171 (666)
Q Consensus 93 -~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (666)
...+...|+..+...+..+.+.|....|+..|-.....-|..=.+|..|..... + ++......... +.+..
T Consensus 155 ~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~----~e~~~~l~~~l-~~~~h 226 (559)
T KOG1155|consen 155 SKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---D----IEILSILVVGL-PSDMH 226 (559)
T ss_pred HHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---h----HHHHHHHHhcC-cccch
Confidence 112333455555555666677788888888888887775544334444433322 2 22222222211 11111
Q ss_pred --hHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 038606 172 --TFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT--PDFEILSKLI 247 (666)
Q Consensus 172 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll 247 (666)
.---+..++....+.+++.+-.+.....|++.+...-+....+.....+++.|+.+|+++.+.+.- -|..+|+.++
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L 306 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH
Confidence 111234566667788999999999998887777766666677777889999999999999987421 2666777666
Q ss_pred HhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHH
Q 038606 248 TSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSF 327 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (666)
-.-.......-............| .++..+.+-|.-.++.++|...|++.++.+ |....+|
T Consensus 307 Yv~~~~skLs~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-----------------p~~~~aW 367 (559)
T KOG1155|consen 307 YVKNDKSKLSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLN-----------------PKYLSAW 367 (559)
T ss_pred HHHhhhHHHHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcC-----------------cchhHHH
Confidence 554444444433333333333333 556666777777778888888888887776 6666777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 038606 328 DIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRR 407 (666)
Q Consensus 328 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (666)
+.+..-|....+...|.+.++.+.+.+ |.|-..|..|.++|.-.+.+.-|+-.|++..+.. |-|...|..+..+|.+.
T Consensus 368 TLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl 445 (559)
T KOG1155|consen 368 TLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKL 445 (559)
T ss_pred HHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHh
Confidence 777777888888888888888777765 5677777778888887777777887887777652 44677777778888777
Q ss_pred CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 408 QDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQ 457 (666)
Q Consensus 408 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 457 (666)
++.++|++.|......+ ..+...+..+...|.+.++..+|...|++-.+
T Consensus 446 ~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 446 NRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 88888888777777665 23445666777777777777777777666554
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.1e-16 Score=148.44 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=41.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNS 114 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (666)
.+++.+.+.|++++|++++.........+.+..-|..++......|+++.|...|+++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455555555555555555433222100233344444444555555555555555555554333 33444444444 355
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcchhhHHHHHHhhhccCCHHHHHHHH
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN-IRLNEKTFCVLIHGFVKKSRVDKALQLF 193 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 193 (666)
+++++|.++++...+.. .++..+..++..+...|+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555443332 233444444555555555555555555544321 1234444445555555555555555555
Q ss_pred HHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 194 DKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
++..+.. |.|......++..+...|+.+++.++++...+
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 5555443 23344455555555555555555555544443
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=9.6e-17 Score=148.96 Aligned_cols=260 Identities=16% Similarity=0.169 Sum_probs=112.5
Q ss_pred ChhhhhHhhhhchHHHHHHHHhhhh-cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhc
Q 038606 1 MASILSRARRIAPLRVLAQDVVKSR-CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKS 79 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (666)
+|+++.+.|+++.|.+++....... ++.++..+..++......++++.|...|+++...+ +.++..+..++.. ...
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-ccc
Confidence 4788899999999999996655545 56678888889999999999999999999999887 4567778888887 799
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCchHHHHHHHHHHhcCChhhHHHH
Q 038606 80 CSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHG--WVDEHVFSILLVAFSKWGEVDKACEL 157 (666)
Q Consensus 80 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (666)
+++++|.+++++..+.. +++..+..++..+...++++++.++++.+.... +.++..|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999887653 466677888889999999999999999987654 35677889999999999999999999
Q ss_pred HHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC
Q 038606 158 IERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT 237 (666)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (666)
++++++..+ .|......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+. .
T Consensus 169 ~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~ 244 (280)
T PF13429_consen 169 YRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--N 244 (280)
T ss_dssp HHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--S
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--c
Confidence 999999853 367788899999999999999999998887754 556677889999999999999999999999874 3
Q ss_pred CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 238 PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 238 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
|+. ......+..++...|+.++|.++.+++..
T Consensus 245 p~d--------------------------------~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDD--------------------------------PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT---------------------------------HHHHHHHHHHHT-----------------
T ss_pred ccc--------------------------------ccccccccccccccccccccccccccccc
Confidence 432 15566778889999999999999887654
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=6e-13 Score=121.21 Aligned_cols=223 Identities=13% Similarity=0.078 Sum_probs=131.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHH
Q 038606 405 CRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLAL 484 (666)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 484 (666)
.-.|+.-.|..-|+..+..... ....|-.+...|...++..+....|.+....+ +.++.+|..-...+.-.++++.|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3456666666666666665422 22225555566666667777777777666654 335556666666666666777777
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcC
Q 038606 485 ELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKE 564 (666)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (666)
.=|++..... +.++..|-.+..+..+.++++++...|++..+. ++-.+..|+....++..+++++.|.+.|+..++..
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 7777666642 334555555555556666777777777777665 44455666666677777777777777777766654
Q ss_pred CC------CCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 565 SG------SPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 565 ~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
+. .+.+...-.++..-. .+++..|..++.+..+.+ +-....+..|...-...|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 41 111111112222112 266667777777776642 22355666666666677777777777776553
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=1.6e-14 Score=136.87 Aligned_cols=285 Identities=14% Similarity=0.108 Sum_probs=175.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC---CchHHHHHHHHHHhcCChhhHHHH
Q 038606 81 SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV---DEHVFSILLVAFSKWGEVDKACEL 157 (666)
Q Consensus 81 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~ 157 (666)
+..+|...|.+.... +.....+...+..+|+..+++++|.++|+.+.+..|. +-++|...+-.+-+ .-+---+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 345677777764443 2223455566667777777777777777777766652 23344443332222 1111112
Q ss_pred HHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC
Q 038606 158 IERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT 237 (666)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (666)
-+.+.+.+ +..+.+|.++.+.|.-+++.+.|++.|++....+ +....+|+.+..-+.....+|.|...|+..+.. .
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 22233332 3355677777777777777777777777766553 335666666666667777777777777766542 2
Q ss_pred CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhc
Q 038606 238 PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFK 317 (666)
Q Consensus 238 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (666)
|.. ..+|..++-.|.+.++++.|+-.|++....+
T Consensus 486 ~rh--------------------------------YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-------------- 519 (638)
T KOG1126|consen 486 PRH--------------------------------YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-------------- 519 (638)
T ss_pred chh--------------------------------hHHHHhhhhheeccchhhHHHHHHHhhhcCC--------------
Confidence 322 1566677777777777777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 038606 318 GTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTL 397 (666)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 397 (666)
|.+......+...+.+.|+.++|+++++++.... +.|+..-...+..+...+++++|+..++++++. ++-+..++
T Consensus 520 ---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~ 594 (638)
T KOG1126|consen 520 ---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVF 594 (638)
T ss_pred ---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHH
Confidence 5666666677777777777777777777776655 344444444555666677777777777777665 23344566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038606 398 NSMFRCLCRRQDVVGALNLVRKMRVQG 424 (666)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 424 (666)
..+...|.+.|+.+.|+.-|..+.+.+
T Consensus 595 ~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 595 ALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 666777777777777777776666554
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.7e-12 Score=120.73 Aligned_cols=509 Identities=12% Similarity=0.016 Sum_probs=313.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+..-+..+.+-+..+.++..|.-+.+++...+ .|+....-+++++.-.|+++.|..+...-. ....+..+....+.+
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~-le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYK-LEKRDIACRYLAAKC 91 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhh-hhhhhHHHHHHHHHH
Confidence 45667777777778888888888888887655 344444557788888888888888776542 222355666777778
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHH
Q 038606 145 FSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMA 224 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 224 (666)
+.+..++++|..++...... .++..+-.-=. ...-..+.+.+ ... +......+-.-...|....++++|
T Consensus 92 l~~lk~~~~al~vl~~~~~~---~~~f~yy~~~~--~~~l~~n~~~~----~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVE---TNPFSYYEKDA--ANTLELNSAGE----DLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHhcccchh---hcchhhcchhh--hceeccCcccc----ccc--ccchhceeeeeeehhhhhccHHHH
Confidence 88888888888887744111 11111100000 00000111110 000 011111222223445556667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHH-HHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHH-HHHHHHhC
Q 038606 225 LQLYSEMKGSGITPDFEILSKLITSCSDEGELT-LLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYN-LLQAMIKG 302 (666)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~ 302 (666)
...|.+....++.- ...+..++....-..+-+ ..++ ..+.. ...+...+-++ +|+.....
T Consensus 161 r~~Y~~Al~~D~~c-~Ea~~~lvs~~mlt~~Ee~~ll~----~l~~a-------------~~~~ed~e~l~~lyel~~~k 222 (611)
T KOG1173|consen 161 RDKYKEALLADAKC-FEAFEKLVSAHMLTAQEEFELLE----SLDLA-------------MLTKEDVERLEILYELKLCK 222 (611)
T ss_pred HHHHHHHHhcchhh-HHHHHHHHHHHhcchhHHHHHHh----cccHH-------------hhhhhHHHHHHHHHHhhhhh
Confidence 77777766533221 111222222111100000 0000 00000 00011111111 11100000
Q ss_pred CCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 038606 303 EPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELL 382 (666)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 382 (666)
..........--..-.+...+.........-+-..+++.+..++++.+.+.. |+....+..-|.++...|+..+-..+-
T Consensus 223 ~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~ls 301 (611)
T KOG1173|consen 223 NRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLS 301 (611)
T ss_pred hccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHH
Confidence 0000000000000000124455566666777888899999999999988765 566667777777888889888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 038606 383 REMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLP 462 (666)
Q Consensus 383 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 462 (666)
.++.+. .|..+.+|-++.--|...|+.++|.+.|.+....+ +.-...|-.+...+.-.+..+.|+..+..+.+.= +.
T Consensus 302 h~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G 378 (611)
T KOG1173|consen 302 HKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PG 378 (611)
T ss_pred HHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cC
Confidence 888876 35577889888888888899999999999887664 4455678888899999999999999888877651 11
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC----CHHH
Q 038606 463 DIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITK--GLIP----SVAT 536 (666)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~ 536 (666)
...-+--+.--|.+.+..+.|.+.|.+.... .|.|+...+-+.-.....+.+.+|..+|+..... .+.+ -..+
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 2222333445677889999999999998876 4667888888877777788999999999887732 0111 2335
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038606 537 YNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITG 614 (666)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 614 (666)
++.|..+|.+.+.+++|+..+++.+...+ .+..++.++.-.|...|+++.|++.|.+... +.|+..+-..++..
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~--k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSP--KDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL 531 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCC--CchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence 77788899999999999999999988876 6777888888889999999999999999876 57776555555543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.68 E-value=3.4e-13 Score=131.79 Aligned_cols=290 Identities=11% Similarity=0.020 Sum_probs=155.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHH
Q 038606 335 LKDGKLDLALSLFREMTQIGCMQN-VFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTH--FTLNSMFRCLCRRQDVV 411 (666)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 411 (666)
...|+++.|.+.+.+..+.. |+ ...+-....+....|+++.|.+.+.+..+. .|+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 45677777777776665543 33 223333445566667777777777776554 2333 22333456666677777
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHH---HccCChHHHHHHH
Q 038606 412 GALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYS-AAIGGL---IDIKRVDLALELF 487 (666)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~ 487 (666)
.|...++.+.+.. |.+......+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777766654 444555666666677777777777777777666532 222221 111111 2222223333444
Q ss_pred HHHHhcCCC---ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCChhHHHHHHHHHH
Q 038606 488 RDICAHGCC---PDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVAT---YNLLINGWCKSGNIDQAMLCLSRML 561 (666)
Q Consensus 488 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (666)
..+...... .++..+..+...+...|+.++|.+++++..+.. |+... .....-.....++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 444443211 255556666666666666666666666666642 22221 0111111223355566666666666
Q ss_pred hcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038606 562 EKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMK 632 (666)
Q Consensus 562 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 632 (666)
+..|..|+.....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55443332244455666666666666666666643332235566556666666666666666666666543
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.1e-12 Score=117.75 Aligned_cols=351 Identities=11% Similarity=0.050 Sum_probs=177.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 69 YNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD-KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
+...++-+.++|.+++|+++|..+++. .|+ +.-|.....+|...|+|++.++--.+.++.+|....++.....++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Confidence 455677788999999999999999986 445 77788888899999999999999999999988777888888899999
Q ss_pred cCChhhHHHHHHHHhhC-CCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHh-CC--CCccHHHHHHHHHhhhc------
Q 038606 148 WGEVDKACELIERMDDC-NIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTK-SG--FASDAAMYDVIIGGLCK------ 217 (666)
Q Consensus 148 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~------ 217 (666)
.|++.+|..=..-..-. ++. |. ....++.-..+ ..|....+.-.+ .+ +-|+.....+....+..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~-s~~~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~ 269 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NA-SIEPMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF 269 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cc-hhHHHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc
Confidence 99998886533222111 111 11 11111111111 112222222222 11 12333322222222210
Q ss_pred ---cCChh----HHHHHHHHHHhCCCCCC-----HHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHh
Q 038606 218 ---NKQLE----MALQLYSEMKGSGITPD-----FEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVS 285 (666)
Q Consensus 218 ---~g~~~----~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (666)
...-+ ++.+.+..-...|.... ..+.......+... .+.-.+.+ ..++......+.-
T Consensus 270 ~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~--~d~~le~~---------A~al~~~gtF~fL 338 (606)
T KOG0547|consen 270 DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNE--IDAELEYM---------AEALLLRGTFHFL 338 (606)
T ss_pred cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccc--cchhHHHH---------HHHHHHhhhhhhh
Confidence 00011 11111111111010000 00000000000000 00000000 0112222233444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038606 286 NGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNL 365 (666)
Q Consensus 286 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 365 (666)
.|+.-.|.+-|+..+... +.+...|-.+...|....+.++-...|....+.+ +.++.+|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~-----------------~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHR 400 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLD-----------------PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHR 400 (606)
T ss_pred cCCchhhhhhHHHHHhcC-----------------cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhH
Confidence 566666666666666554 3333335555556666666666666666666555 3445555555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 038606 366 IDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKA 445 (666)
Q Consensus 366 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (666)
..++.-.+++++|..-|++..... +-+...|-.+.-+..+.+.++++...|++.... +|..+..|+.....+...+++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH
Confidence 555555566666666666665542 223344444444445555666666666655544 344555555555555555555
Q ss_pred HHHHHHHHHHHHc
Q 038606 446 MEAFRFLTDMVQE 458 (666)
Q Consensus 446 ~~a~~~~~~~~~~ 458 (666)
+.|.+.|+.....
T Consensus 479 d~A~k~YD~ai~L 491 (606)
T KOG0547|consen 479 DKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHhh
Confidence 5555555555443
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=4.8e-13 Score=129.96 Aligned_cols=291 Identities=13% Similarity=0.080 Sum_probs=188.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHH-HHHHHhcCChhhHHHHHHHHhhCCCCcchhhH--HHHHHhhhccCCHHHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSIL-LVAFSKWGEVDKACELIERMDDCNIRLNEKTF--CVLIHGFVKKSRVDKA 189 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A 189 (666)
..|++++|.+.+....+... .+..+..+ ..+..+.|+++.|.+.+.++.+.. |+.... ......+...|+++.|
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence 36889988888877666533 23333333 445588899999999999988763 343322 2336677889999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCC
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDV 269 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 269 (666)
...++++.+.. |.+...+..+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~--------------------- 229 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ--------------------- 229 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH---------------------
Confidence 99999988876 667778888889999999999999999999887654322 1111000
Q ss_pred CCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038606 270 NTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFRE 349 (666)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 349 (666)
..+..++.......+.+...++++.+.+.. +.+......+...+...|+.++|...+++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-----------------~~~~~~~~~~A~~l~~~g~~~~A~~~L~~ 288 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKT-----------------RHQVALQVAMAEHLIECDDHDTAQQIILD 288 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-----------------hCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 112222222223334444455555443332 55666777777777777888887777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch
Q 038606 350 MTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWV 429 (666)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 429 (666)
..+. +++.... ++.+....++.+++++..+...+.. +-|...+..+.+.+.+.+++++|.+.|+.+.+. .|+.
T Consensus 289 ~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~ 361 (398)
T PRK10747 289 GLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDA 361 (398)
T ss_pred HHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence 7663 3454322 2223334577777777777776652 335555667777777777777777777777764 4566
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 430 KHNTLLIKELCKHGKAMEAFRFLTDMVQ 457 (666)
Q Consensus 430 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 457 (666)
..+..+...+.+.|+.++|..++++...
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666677777777777777777766543
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=9.9e-10 Score=104.13 Aligned_cols=588 Identities=13% Similarity=0.086 Sum_probs=300.2
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHH---HhcC-----ChhHHHHHHHHHHhcCCC
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEAL---CKSC-----SVDLVEMRLKEMQDYGWG 98 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g-----~~~~A~~~~~~~~~~~~~ 98 (666)
|.|...+...+..... .-.++-.-+|++++..- |.+...|..-+..- .+.. .++.....|++.+..=.
T Consensus 24 p~svk~W~RYIe~k~~-sp~k~~~~lYERal~~l--p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mH- 99 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAG-SPDKQRNLLYERALKEL--PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMH- 99 (835)
T ss_pred chhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh-
Confidence 4566666667666554 34466677888888876 67777777766432 2221 23444444554443211
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHH
Q 038606 99 YDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWV--DEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVL 176 (666)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 176 (666)
.-+.+|...++...++|+....+..|+.++..-|. ...+|...+......|-.+-+..++++.++.. +..-+-.
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHH
Confidence 25667888888999999999999999999887663 45689999999999999999999999998863 3346677
Q ss_pred HHhhhccCCHHHHHHHHHHHHhCC------CCccHHHHHHHHHhhhccCC---hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038606 177 IHGFVKKSRVDKALQLFDKMTKSG------FASDAAMYDVIIGGLCKNKQ---LEMALQLYSEMKGSGITPDFEILSKLI 247 (666)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~ll 247 (666)
+..+.+.+++++|.+.+..+.... .+.+...|..+-....++-+ --...++++.+... -+|..
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~------ 247 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQL------ 247 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHH------
Confidence 788889999999999998876421 12333344443333332221 11222233333221 12220
Q ss_pred HhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchh-----------------
Q 038606 248 TSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEP-IADVG----------------- 309 (666)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----------------- 309 (666)
...|.+|.+-|++.|.+++|.++|+.....-. ..+.+
T Consensus 248 -------------------------g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~ 302 (835)
T KOG2047|consen 248 -------------------------GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAK 302 (835)
T ss_pred -------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHH
Confidence 15677777777777777777777766554321 00000
Q ss_pred ----------------HHHHH-hhc---------------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038606 310 ----------------VEMLM-IFK---------------GTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQ 357 (666)
Q Consensus 310 ----------------~~~~~-~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 357 (666)
.+..+ .+. ..-+.++..|..-+ -+..|+..+-...+.++.+.- .|
T Consensus 303 me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~v-dP 379 (835)
T KOG2047|consen 303 MELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTV-DP 379 (835)
T ss_pred HhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHcc-Cc
Confidence 00000 000 00011111111111 111233444444444443321 11
Q ss_pred ------CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 038606 358 ------NVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPT---HFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEP- 427 (666)
Q Consensus 358 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~- 427 (666)
-...|..+...|...|+.+.|..+|++..+-..+-- ..+|......=.+..+++.|.+++++.......+
T Consensus 380 ~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~ 459 (835)
T KOG2047|consen 380 KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE 459 (835)
T ss_pred ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh
Confidence 112344455555555555555555555544322111 1233333333344445555555555444321111
Q ss_pred ----------------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 038606 428 ----------------WVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDIC 491 (666)
Q Consensus 428 ----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 491 (666)
+...|...+......|-++....+|+.+....+. ++...-.....+-...-++++.++|++-+
T Consensus 460 ~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 460 LEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred hhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence 0112333333334444555555555555544322 22222222222233444555555555544
Q ss_pred hcCCCccH-HHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccCChhHHHHHHHHHHhcCC
Q 038606 492 AHGCCPDV-VAYNIIISGLCK---AQRVAEAEDLFNEMITKGLIPSVATYNLLI--NGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 492 ~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
..-..|++ ..|+..+.-+.+ ....+.|..+|++.++ |.+|...-+..|+ ..--+.|-...|+.+++++...-.
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 43223332 234443333222 2345666666666666 4444433222222 222234666666666666554422
Q ss_pred CCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHccCChhHHHHHHHHHHHcCCCC--CH
Q 038606 566 GSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMAL---ITGLCKCDRPRAALVHFRMMKEKGMKP--DM 640 (666)
Q Consensus 566 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 640 (666)
...-...||..|.--...=-......+|+++++. -|+...-... ...=.+.|..+.|..+|.-..+.- +| +.
T Consensus 618 ~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~-dPr~~~ 694 (835)
T KOG2047|consen 618 EAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQIC-DPRVTT 694 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC-CCcCCh
Confidence 1111234555554433333344556666666663 3444333222 233346677778877777665532 33 45
Q ss_pred HHHHHHHHHHHhcCChhhHHHHH
Q 038606 641 FVFVALISAFLSELNPPLAFEVL 663 (666)
Q Consensus 641 ~~~~~l~~~~~~~g~~~~A~~~~ 663 (666)
..|...=..-.+.|+-+.-.+++
T Consensus 695 ~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 695 EFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Confidence 66777777777777755544443
No 53
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.66 E-value=1.6e-10 Score=109.64 Aligned_cols=150 Identities=7% Similarity=-0.025 Sum_probs=74.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
.+.+...+++.+.+++.. |...++....+-.+...|+-++|.......++.++. +.+.|..+.-.+....++++|++
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 455555666666555533 444455555455555555555665555555554443 45555555555555555566666
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHH
Q 038606 123 VFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKM 196 (666)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (666)
.|..+...++.|..++.-+...-++.|+++.....-.+..+.. +.....|..++.++.-.|++..|..+++..
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555555555555555555555555544444444443331 112233333333333344444444444433
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=9.9e-13 Score=113.43 Aligned_cols=301 Identities=17% Similarity=0.164 Sum_probs=205.1
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---cccHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD---KYTLTP 106 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 106 (666)
+..|..-+..+.. ...++|.++|-.+.+.+ |.+.++..+|++.+-+.|..+.|+.+.+.+.+..--+. ......
T Consensus 36 sr~Yv~GlNfLLs-~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 36 SRDYVKGLNFLLS-NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred cHHHHhHHHHHhh-cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445555555553 56688888888888876 67777888888888888999999988888877511111 123445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchh----hHHHHHHhhhc
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEK----TFCVLIHGFVK 182 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 182 (666)
|.+-|...|-++.|..+|..+.+.+..-+.+.-.++..|....++++|++.-+++.+.+..+... .|.-+...+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 66778888888888888888887666667788888888888888888888888887765443322 24445555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHH
Q 038606 183 KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKE 262 (666)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 262 (666)
..+.+.|..++.+..+.+ +..+..--.+...+...|+++.|.+.++.+.+.+ |+. .
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn--~~y--l------------------- 248 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQN--PEY--L------------------- 248 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhC--hHH--H-------------------
Confidence 778888888888887765 4444455556677788888888888888887753 322 1
Q ss_pred HHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHH
Q 038606 263 IWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDL 342 (666)
Q Consensus 263 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 342 (666)
..+...+..+|.+.|+.++....+.++.+. .+....-..+........-.+.
T Consensus 249 ----------~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~------------------~~g~~~~l~l~~lie~~~G~~~ 300 (389)
T COG2956 249 ----------SEVLEMLYECYAQLGKPAEGLNFLRRAMET------------------NTGADAELMLADLIELQEGIDA 300 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHc------------------cCCccHHHHHHHHHHHhhChHH
Confidence 144566677788888888888888877765 3444455555555555555666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHh
Q 038606 343 ALSLFREMTQIGCMQNVFLYNNLIDGLCNS---NRLEESYELLREMEE 387 (666)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 387 (666)
|...+.+-... .|+...+..++...... |...+.+..++.|..
T Consensus 301 Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 301 AQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 66666555444 37877777777765543 334555555555543
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.64 E-value=3.3e-11 Score=114.14 Aligned_cols=457 Identities=12% Similarity=0.084 Sum_probs=284.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhH
Q 038606 75 ALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKA 154 (666)
Q Consensus 75 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (666)
-+...+++....+..+.+++..++ ...++...+-.+...|+-++|........+.++.+..+|..++..+....++++|
T Consensus 16 k~yE~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 16 KCYETKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 344778888888888888885433 4555555555556678888998888888888887888899998888888999999
Q ss_pred HHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 155 CELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
++.|..+...+ +.|...+.-+.-.-++.++++.....-..+.+.. +.....|...+.++.-.|++..|..++++..+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999988876 4466677666655667788888877777776653 445567888888888889999999988888775
Q ss_pred C-CCCCHHHHHHHHH------hhhccCcHHHHHHHHHhhCCCCCccch-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038606 235 G-ITPDFEILSKLIT------SCSDEGELTLLVKEIWEDRDVNTMTLL-CNSIMRILVSNGSIDQAYNLLQAMIKGEPIA 306 (666)
Q Consensus 235 ~-~~~~~~~~~~ll~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 306 (666)
. ..|+...+..... .....|..+.+.+.+........+... -..-...+.+.+++++|..++..+....
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--- 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--- 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC---
Confidence 4 2455544443332 233445555555555444333222222 2333456777888888888888888764
Q ss_pred chhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHH
Q 038606 307 DVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLAL-SLFREMTQIGCMQNVFLYNNL-IDGLCNSNRLEESYELLRE 384 (666)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 384 (666)
|.+..-|..+..++.+-.+..++. .+|....+.- |....-..+ +.......-.+....++..
T Consensus 250 --------------Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 250 --------------PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred --------------chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHH
Confidence 444444445555554333333333 5555544321 111110000 1111111123344456666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCchhhH--HHHHHHHHhcCCHHHH
Q 038606 385 MEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRV----QG----------HEPWVKHN--TLLIKELCKHGKAMEA 448 (666)
Q Consensus 385 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~a 448 (666)
+.+.|+++-- ..+...|-.....+-..++.-.+.. .+ -+|....| ..++..+-..|+++.|
T Consensus 314 ~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 314 LLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred HhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 6777765432 2222222221111111111111111 10 13444433 4466778889999999
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038606 449 FRFLTDMVQEGFLPDI-VCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMIT 527 (666)
Q Consensus 449 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 527 (666)
..+++..... .|+. ..|..-...+...|+++.|...+++..+.+ .+|...-.--..-..+..+.++|..+...+.+
T Consensus 391 ~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 391 LEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTR 467 (700)
T ss_pred HHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence 9999998887 5553 344455577888999999999999988764 55666555666777788999999999999988
Q ss_pred CCCCCCHHH--------HHHH--HHHHHccCChhHHHHHHHHHH
Q 038606 528 KGLIPSVAT--------YNLL--INGWCKSGNIDQAMLCLSRML 561 (666)
Q Consensus 528 ~~~~p~~~~--------~~~l--~~~~~~~g~~~~a~~~~~~~~ 561 (666)
.|. +... |-.+ ..+|.+.|++..|++-|..+.
T Consensus 468 ~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 468 EGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred ccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 764 2211 2111 356778888888777665553
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=1.9e-12 Score=115.43 Aligned_cols=285 Identities=12% Similarity=0.105 Sum_probs=188.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
.|+|..|+++..+..+.+ +...-.|..-+.+.-+.|+.+.+-.++.++-+....++.....+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 588888888888877776 344556666677788888888888888888775334444555566677778888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcch-------hhHHHHHHhhhccCCHHHHHHHHHH
Q 038606 123 VFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE-------KTFCVLIHGFVKKSRVDKALQLFDK 195 (666)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (666)
-.+++...+|.++.+......+|.+.|++.....++..+.+.+.-.++ .+++.+++-....+..+.-...++.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 888888888888888888888888888888888888888887654333 3445555544444444444445555
Q ss_pred HHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccch
Q 038606 196 MTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLL 275 (666)
Q Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (666)
....- ..++..-.+++.-+.+.|+.++|.++.++..+++.+|...+
T Consensus 255 ~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~--------------------------------- 300 (400)
T COG3071 255 QPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR--------------------------------- 300 (400)
T ss_pred ccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---------------------------------
Confidence 44321 34555666677777788888888888887777665554211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038606 276 CNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGC 355 (666)
Q Consensus 276 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 355 (666)
.-...+.++...-++..+...+.. +.++..+.++...|.+.+.+.+|...|+...+.+
T Consensus 301 ----~~~~l~~~d~~~l~k~~e~~l~~h-----------------~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~- 358 (400)
T COG3071 301 ----LIPRLRPGDPEPLIKAAEKWLKQH-----------------PEDPLLLSTLGRLALKNKLWGKASEALEAALKLR- 358 (400)
T ss_pred ----HHhhcCCCCchHHHHHHHHHHHhC-----------------CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-
Confidence 111233444444444454444443 4444556666666666666666666666555543
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 356 MQNVFLYNNLIDGLCNSNRLEESYELLREME 386 (666)
Q Consensus 356 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 386 (666)
|+..+|+.+.+++.+.|+..+|.+..++..
T Consensus 359 -~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 359 -PSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred -CChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 666666666666666666666666665554
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.7e-11 Score=114.28 Aligned_cols=478 Identities=11% Similarity=0.019 Sum_probs=220.5
Q ss_pred hHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 13 PLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 92 (666)
.|.-+.+.|...+ .+|.-..++++++.-.|.++.|..+...-.-. ..+.......+.++.+..+++.|..++...
T Consensus 34 ~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~~ 108 (611)
T KOG1173|consen 34 TALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAKCLVKLKEWDQALLVLGRG 108 (611)
T ss_pred HHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333334444433 67888889999999999999998888776443 357777888888888999999988888733
Q ss_pred HhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhh
Q 038606 93 QDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKT 172 (666)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (666)
.. ..++..+..-= + ...-..+.+.+....- .....+..-+..|....+.++|...|.++...++. ....
T Consensus 109 ~~---~~~~f~yy~~~-~-~~~l~~n~~~~~~~~~-----~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea 177 (611)
T KOG1173|consen 109 HV---ETNPFSYYEKD-A-ANTLELNSAGEDLMIN-----LESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEA 177 (611)
T ss_pred ch---hhcchhhcchh-h-hceeccCccccccccc-----chhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHH
Confidence 11 11111110000 0 0000000110000000 11223334444555555666666666665544221 1112
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhC-CCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Q 038606 173 FCVLIHGFVKKSRVDKALQLFDKMTKS-GFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCS 251 (666)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 251 (666)
+..++....-. ..+-..+|+.+.-. ....++.....+.....-...-+.....-++-.-.+..-+.
T Consensus 178 ~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~----------- 244 (611)
T KOG1173|consen 178 FEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL----------- 244 (611)
T ss_pred HHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH-----------
Confidence 22222221110 01111111110000 00111111111111110000000000000001111112222
Q ss_pred ccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHH
Q 038606 252 DEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIII 331 (666)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 331 (666)
.....-..-+...+++.+..++.+.+.+.. |++...+..-|
T Consensus 245 ----------------------dll~~~ad~~y~~c~f~~c~kit~~lle~d-----------------pfh~~~~~~~i 285 (611)
T KOG1173|consen 245 ----------------------DLLAEKADRLYYGCRFKECLKITEELLEKD-----------------PFHLPCLPLHI 285 (611)
T ss_pred ----------------------HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-----------------CCCcchHHHHH
Confidence 122223333444555555555555555544 44444444445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038606 332 NTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVV 411 (666)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 411 (666)
.++...|+..+-..+=.++.+.- |..+.+|-++.--|...|+..+|.+.|.+....+ +.=...|.....+|.-.+..+
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHH
Confidence 55555555555544444554433 3444555555555555555555555555554332 112234555555555555555
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 038606 412 GALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDIC 491 (666)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 491 (666)
+|...+..+-+.- +.....+-.+..-|.+.++...|.+.|.+..... +.|+...+.+.-.....+.+.+|..+|+...
T Consensus 364 QAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 364 QAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 5555555444321 1122222333444555555555665555555442 3345555555555555556666666655544
Q ss_pred hc----C--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhc
Q 038606 492 AH----G--CCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEK 563 (666)
Q Consensus 492 ~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 563 (666)
.. + ..--..+++.+..+|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.+-.
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 11 0 00122345555666666666666666666666542 235556666666666666666666666666554
No 58
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=6.5e-12 Score=122.90 Aligned_cols=513 Identities=14% Similarity=0.097 Sum_probs=259.1
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 038606 88 RLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHG-WVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI 166 (666)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (666)
.+..+...|+.|+.++|.+++.-|+..|+.+.|- +|..|...+ |+....++.+.......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4445555667777777777777777777777776 666665443 355566777777767766666664
Q ss_pred CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh-CCCCCCHHHHHH
Q 038606 167 RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG-SGITPDFEILSK 245 (666)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~ 245 (666)
.|...+|..|..+|...|++.. .+..++ ....+...+...|.......++..+.- .+.-||...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 3556677777777777776654 222222 011122222333333333333322211 112233211
Q ss_pred HHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCH
Q 038606 246 LITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILV-SNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNT 324 (666)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (666)
++......|-++..+..+...+....+..... .++-.. .+..+++-....+.... .+++
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~v-fLrqnv~~ntpvekLl~~cksl~e-------------------~~~s 204 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV-FLRQNVVDNTPVEKLLNMCKSLVE-------------------APTS 204 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHH-HHHHhccCCchHHHHHHHHHHhhc-------------------CCCh
Confidence 11111122222222222222221111110000 111111 12222333333333322 4889
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038606 325 SSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCL 404 (666)
Q Consensus 325 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (666)
.++..++......|+.+.|..++.+|++.|.+.+.+.|..|+-+ .++...+..+++-|...|+.|+..|+...+..+
T Consensus 205 ~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 205 ETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 99999999999999999999999999999999999888877754 778888889999999999999999998877777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC-----C-----HHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038606 405 CRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHG-----K-----AMEAFRFLTDMVQEGFLPDIVCYSAAIGGL 474 (666)
Q Consensus 405 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 474 (666)
...|....+. .+.+.+. .++.-...-.-.| . ..-....+.+..-.|+.....+|......
T Consensus 282 l~N~~t~~~~--------e~sq~~h-g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l- 351 (1088)
T KOG4318|consen 282 LSNGQTKYGE--------EGSQLAH-GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL- 351 (1088)
T ss_pred hcchhhhhcc--------cccchhh-hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-
Confidence 7644422111 1111111 1111111111112 0 11111111221112222222223222221
Q ss_pred HccCChHHHHHHHHHHHhc--CC-CccHHHHHHHHHHHHcc----------------------CCHHHHHHHHHHHHHC-
Q 038606 475 IDIKRVDLALELFRDICAH--GC-CPDVVAYNIIISGLCKA----------------------QRVAEAEDLFNEMITK- 528 (666)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~- 528 (666)
...|.-+...++-..+..- .. ..++..|..++.-|.+. .+..+..+........
T Consensus 352 ~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns 431 (1088)
T KOG4318|consen 352 RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNS 431 (1088)
T ss_pred HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcch
Confidence 1234444444444333211 00 11222232222222221 1122222222211110
Q ss_pred ---------------CCCC----C---HHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCCh
Q 038606 529 ---------------GLIP----S---VATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRP 586 (666)
Q Consensus 529 ---------------~~~p----~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 586 (666)
-..| . ...-+.++..++..-+..+++..-++.... . -...|..|++-+......
T Consensus 432 ~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-l---f~g~ya~Li~l~~~hdkl 507 (1088)
T KOG4318|consen 432 FLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-L---FAGLYALLIKLMDLHDKL 507 (1088)
T ss_pred HHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hhhHHHHHhhhHHHHHHH
Confidence 0000 0 001233444455544555555444433222 1 125677888888888888
Q ss_pred hHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCChhhHHHH
Q 038606 587 DDAIMLWNEMEEK--GCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGM-KPD-MFVFVALISAFLSELNPPLAFEV 662 (666)
Q Consensus 587 ~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~ 662 (666)
+.|..+..+.... .+..+..-+..+.+.+.+.+....+.++++++.+.-. .|. ..+...+.+.....|+.+.-.+.
T Consensus 508 e~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl 587 (1088)
T KOG4318|consen 508 EYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKL 587 (1088)
T ss_pred HHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHH
Confidence 8888888877542 1233555667778888888888888888888876321 222 56666777777777777766655
Q ss_pred Hh
Q 038606 663 LK 664 (666)
Q Consensus 663 ~~ 664 (666)
.+
T Consensus 588 ~d 589 (1088)
T KOG4318|consen 588 AD 589 (1088)
T ss_pred HH
Confidence 43
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.9e-12 Score=111.69 Aligned_cols=229 Identities=15% Similarity=0.184 Sum_probs=148.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcc--hhhHHHHHHhhhccCCHHHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN-IRLN--EKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A 189 (666)
-+++.++|+.+|-++.+.++...++..++++.|.+.|.++.|+++.+.+.++. .+.+ ......|..-|...|-++.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 34667777777777777666666666777777777777777777777766541 1000 11233455556777777788
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCC
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDV 269 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 269 (666)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-++...-.
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 87777777643 233445666777777777777777777777765443332110
Q ss_pred CCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 038606 270 NTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFRE 349 (666)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 349 (666)
...|..+...+....+.+.|..++++..+.+ +..+.+-..+.+.....|+++.|.+.++.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-----------------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~ 239 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQAD-----------------KKCVRASIILGRVELAKGDYQKAVEALER 239 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-----------------ccceehhhhhhHHHHhccchHHHHHHHHH
Confidence 0334555555666667777777777777665 55555556666777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038606 350 MTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEES 388 (666)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 388 (666)
+.+.+..--+.+...|..+|.+.|+.++....+..+.+.
T Consensus 240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 777653334555666777777777777777777777665
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.62 E-value=5.3e-10 Score=108.42 Aligned_cols=508 Identities=11% Similarity=0.024 Sum_probs=268.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcccHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhH
Q 038606 78 KSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQ---VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKA 154 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (666)
+.++.+.+..-+......+...++.++-.+-. .|...++.+++ .+...+.. .++-..+.+++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e--------------s~i~Re~~~d~ 303 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE--------------SLIPRENIEDA 303 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh--------------hccccccHHHH
Confidence 45566677777777776666555555444332 22233444444 22222222 22223333333
Q ss_pred HHH----HHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHH
Q 038606 155 CEL----IERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSE 230 (666)
Q Consensus 155 ~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 230 (666)
... +.++....+..+...|..+.-++...|+++.+-+.|++..... -.....|..+...|...|.-..|..++++
T Consensus 304 ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 304 ILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 222 2333333345677888888888889999999999999987543 34456788888889999999999999988
Q ss_pred HHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCchh
Q 038606 231 MKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRIL-VSNGSIDQAYNLLQAMIKGEPIADVG 309 (666)
Q Consensus 231 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~ 309 (666)
-......|+.. ..+....+.| -+.+..++++++..++......
T Consensus 383 ~~~~~~~ps~~--------------------------------s~~Lmasklc~e~l~~~eegldYA~kai~~~~~---- 426 (799)
T KOG4162|consen 383 SLKKSEQPSDI--------------------------------SVLLMASKLCIERLKLVEEGLDYAQKAISLLGG---- 426 (799)
T ss_pred hcccccCCCcc--------------------------------hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh----
Confidence 76654334431 1122222222 2346667777777666652100
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 038606 310 VEMLMIFKGTVSPNTSSFDIIINTLLKD-----------GKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEES 378 (666)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 378 (666)
..+ .-....+..+.-+|... ....++++.+++..+.+ +.|+.+...+.--|+..++.+.|
T Consensus 427 ------~~~--~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sA 497 (799)
T KOG4162|consen 427 ------QRS--HLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSA 497 (799)
T ss_pred ------hhh--hhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHH
Confidence 000 22233344444444322 12345677788877765 23333333344457778889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038606 379 YELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQE 458 (666)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 458 (666)
.+..++..+.+-..+...|..+.-.+...+++..|+.+.+.....- +.+......-+..-...++.++++.....++.-
T Consensus 498 l~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 498 LDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 9999998887556678888888888888999999999888776531 111111111122223355666665555544321
Q ss_pred CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC--C-
Q 038606 459 GFLPDIVCYSAAIGGLIDIKRVDLALELFRDICA--HGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIP--S- 533 (666)
Q Consensus 459 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~- 533 (666)
- -+...+. ..++-....+....+.- ......+.++..+..-.. .+...+-.-.. +......| +
T Consensus 577 w--e~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~-Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 577 W--EAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK-LPSSTVLPGPDS 644 (799)
T ss_pred H--HhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-cCcccccCCCCc
Confidence 0 0000000 00000011111111100 000111112222211111 00000000000 11111111 1
Q ss_pred -----HHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHH
Q 038606 534 -----VATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAP-NRIT 607 (666)
Q Consensus 534 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 607 (666)
...|......+.+.++.++|...+.+.....+ .....|......+...|.+.+|.+.|...... .| ++.+
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~--l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s 720 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP--LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPS 720 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcch--hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHH
Confidence 11233444556666667777666666655544 34445555555666666777777777666653 33 3555
Q ss_pred HHHHHHHHHccCChhHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHh
Q 038606 608 FMALITGLCKCDRPRAALV--HFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEVLK 664 (666)
Q Consensus 608 ~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (666)
..++..++.+.|+..-|.. ++..+.+.+ +-++..|..++..+.+.|+.++|.+-|.
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 6666666667676666655 666666655 5566777777777777777777666553
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=9e-11 Score=102.76 Aligned_cols=450 Identities=11% Similarity=0.034 Sum_probs=237.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 038606 37 IRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQ 116 (666)
Q Consensus 37 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (666)
+.-+..+.|+..|+.+++-....+. .....+-.+++.++...|++++|...|..+.+.. .++...+..+.-.++-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 4555667899999999988775542 2333566678888999999999999999888753 4567777777777778899
Q ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHH
Q 038606 117 FDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKM 196 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 196 (666)
+.+|..+-.+..+ +|-....+....-+.|+-++-....+.+.+. ..--.+|.......-.+.+|++++.++
T Consensus 107 Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999877655433 4445555666667777777666655555432 122334555544556688999999998
Q ss_pred HhCCCCccHHHHHH-HHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccch
Q 038606 197 TKSGFASDAAMYDV-IIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLL 275 (666)
Q Consensus 197 ~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (666)
...+ |+....|. +.-+|.+..-++-+.+++.-..+. .||...-. =+.+|.
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~-NLkacn------------------------ 228 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAK-NLKACN------------------------ 228 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHH-HHHHHH------------------------
Confidence 8663 55444444 455677888888888888877764 35542211 111221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHH
Q 038606 276 CNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLK-----DGKLDLALSLFREM 350 (666)
Q Consensus 276 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~ 350 (666)
..+.-.-..|.+-.+.+.+.. ..+- ..+.-+++ -.+-+.|++++-.+
T Consensus 229 -------~fRl~ngr~ae~E~k~ladN~-----------------~~~~----~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 229 -------LFRLINGRTAEDEKKELADNI-----------------DQEY----PFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred -------HhhhhccchhHHHHHHHHhcc-----------------cccc----hhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 111111112222222222211 0000 00111111 12233444444433
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCC
Q 038606 351 TQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLC-----RRQDVVGALNLVRKMRVQGH 425 (666)
Q Consensus 351 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~ 425 (666)
.+. .|. .--.|+-.|.++++..+|..+.+++.-. .|-......+..+.. ......-|.+.|+..-.++.
T Consensus 281 ~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 281 MKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESAL 354 (557)
T ss_pred Hhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 331 111 1122333445555555555555444311 222222222211111 11123344444444433332
Q ss_pred CCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHH
Q 038606 426 EPWV-KHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNI 504 (666)
Q Consensus 426 ~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 504 (666)
.-+. .--..+...+.-..++++++..+..+...- ..|....-.+..+++..|.+.+|+++|-.+....++.+..-...
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~ 433 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSM 433 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHH
Confidence 2211 112233334444455666666666655542 22222223455666667777777777766654433333333345
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChhHHHHHHHHHHhcC
Q 038606 505 IISGLCKAQRVAEAEDLFNEMITKGLIPSVATYN-LLINGWCKSGNIDQAMLCLSRMLEKE 564 (666)
Q Consensus 505 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (666)
+..+|.+.+.++-|..++-++. .+.+..+.. .+.+.|.+++.+--|-+.|+.+...+
T Consensus 434 LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 434 LARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 5566677777776665544432 222333333 33455667777776777777665553
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.61 E-value=1.4e-11 Score=110.04 Aligned_cols=293 Identities=13% Similarity=0.082 Sum_probs=176.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038606 286 NGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNL 365 (666)
Q Consensus 286 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 365 (666)
.|++..|+++..+..+.+ +.....|..-+.+..+.|+.+.+-.++.++.+..-.++....-..
T Consensus 97 eG~~~qAEkl~~rnae~~-----------------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltr 159 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-----------------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTR 159 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-----------------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 577777777777766655 455556666667777777777777777777765323455555556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 038606 366 IDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKA 445 (666)
Q Consensus 366 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (666)
.......|+++.|..-..++.+.+ +-++.......++|.+.|++.....++..+.+.+.-.+...-..
T Consensus 160 arlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------- 227 (400)
T COG3071 160 ARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------- 227 (400)
T ss_pred HHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH-----------
Confidence 666677777777777777776654 44566677777777777777777777777776654333221100
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038606 446 MEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEM 525 (666)
Q Consensus 446 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 525 (666)
...++..++.-....+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++.++.
T Consensus 228 -----------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 228 -----------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred -----------------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1123333444333333444434444444332 2334445555666666667777777776666
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 038606 526 ITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNR 605 (666)
Q Consensus 526 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 605 (666)
.+++..|+.. . .-.+.+-++...-++..++-.+..+..| ..+.+|...|.+.+.|.+|.+.|+...+ ..|+.
T Consensus 290 Lk~~~D~~L~---~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~ 361 (400)
T COG3071 290 LKRQWDPRLC---R-LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSA 361 (400)
T ss_pred HHhccChhHH---H-HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCCh
Confidence 6665554411 1 1234455666666666666665555333 4566666777777777777777776555 35666
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 606 ITFMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 606 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
.+|+.+..++.+.|+..+|.+..++...
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777766666554
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=4e-13 Score=136.51 Aligned_cols=203 Identities=11% Similarity=0.033 Sum_probs=127.6
Q ss_pred CCCcchHHHHHHHHhc-----cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh---------cCChhHHHHHHHHH
Q 038606 27 FMSPGALGFLIRCLGS-----VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK---------SCSVDLVEMRLKEM 92 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 92 (666)
+.+++.|...+++... .+++++|..+|+++++.+ |.+...|..++.++.. .+++++|...++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3445555444444211 234567777888777776 5566666666655442 23366777777777
Q ss_pred HhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhh
Q 038606 93 QDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKT 172 (666)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (666)
++.++. +...+..+..++...|++++|...|+++.+.+|.++.++..++.++...|++++|...++++.+.++. +...
T Consensus 331 l~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 331 TELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred HhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 776554 56666666667777777777777777777777777777777777777777777777777777776533 2222
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 173 FCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
+..++..+...|++++|+..++++.+...+.+...+..+..++...|++++|.+.++++..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 2333334445677777777777766543222344456666666677777777777766544
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=6.1e-13 Score=135.19 Aligned_cols=218 Identities=14% Similarity=0.019 Sum_probs=177.4
Q ss_pred hhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhc
Q 038606 9 RRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGS---------VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKS 79 (666)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (666)
+.+.+|+..+++.+...+. ++..+..++.++.. .+++++|...++++++.+ |.+..++..++.++...
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHc
Confidence 4567899999998886543 56777777776552 345899999999999988 78899999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 038606 80 CSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIE 159 (666)
Q Consensus 80 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (666)
|++++|...|+++++.++. +...+..+..++...|++++|+..++++...+|.++..+..++..+...|++++|...++
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999999998755 677888889999999999999999999999999877766666666777899999999999
Q ss_pred HHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 160 RMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...| ++|...++.+.+
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99876433345557777888889999999999999987652 334455666677777777 488887877765
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.59 E-value=5.5e-10 Score=109.79 Aligned_cols=229 Identities=17% Similarity=0.207 Sum_probs=141.7
Q ss_pred HHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCC-----------------------CCCChhhHHHHH
Q 038606 17 LAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGL-----------------------CVPNNYSYNCLL 73 (666)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------------------~~~~~~~~~~l~ 73 (666)
++-.....|..|+..+|..++.-|+..|+.+.|- +|.-|.-.+. -.|.+.+|..|.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 4555566677788888999999999999999888 6665544332 124445666666
Q ss_pred HHHHhcCChhH---HHHHHHHHHh----cCCCCCcccH---------------HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038606 74 EALCKSCSVDL---VEMRLKEMQD----YGWGYDKYTL---------------TPLLQVYCNSGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 74 ~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~~~~~~A~~~~~~~~~~~ 131 (666)
.+|...||... .++-++.... .|+. ....+ ...+......|-++.+++++..++...
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 66666666443 2221111111 1111 00000 011111222333444444433333222
Q ss_pred CCCchHHHHHHHHHH-hcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHH
Q 038606 132 WVDEHVFSILLVAFS-KWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDV 210 (666)
Q Consensus 132 ~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 210 (666)
...+... .++-.. ....+++-..+.....+ .+++.++..+++.-...|+.+.|..++..|.+.|++.+...|-.
T Consensus 170 ~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 170 WNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred ccchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 2222211 111111 11223333333333332 47899999999999999999999999999999999999887777
Q ss_pred HHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCc
Q 038606 211 IIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGE 255 (666)
Q Consensus 211 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 255 (666)
|+-+ .++...+..+++-|.+.|+.|+..|+...+-.+..+|.
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7766 78888899999999999999999999998888887665
No 66
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=5.4e-10 Score=104.99 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=80.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
+=++.+.+.|++++|.+...+++...|.+++++..-+.+.++.+++++|..+.+.-.... ..+...|.. +-++.+.+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~fEK-AYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFFEK-AYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhHHH-HHHHHHccc
Confidence 334556677888888888888888877777778777888888888888875444332110 011111121 122347788
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCC
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGI 236 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 236 (666)
.++|+..++... +.|..+...-.+.+.+.|++++|..+|+.+.+++.
T Consensus 95 ~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 95 LDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 888888877333 33444666667777888888888888888876543
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=1.4e-09 Score=105.69 Aligned_cols=445 Identities=14% Similarity=0.034 Sum_probs=266.3
Q ss_pred CchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCc-cHHHHHHHH
Q 038606 134 DEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFAS-DAAMYDVII 212 (666)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~ 212 (666)
++.+|..+.-+....|+++.+.+.|++....-+ .....|..+...|...|.-..|+.+++........| |...+-...
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 566777777788888888888888888776432 245567777777777888888888887765443223 333333333
Q ss_pred Hhhh-ccCChhHHHHHHHHHHhCC--CC--CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcC
Q 038606 213 GGLC-KNKQLEMALQLYSEMKGSG--IT--PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNG 287 (666)
Q Consensus 213 ~~~~-~~g~~~~a~~~~~~~~~~~--~~--~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 287 (666)
..|. +.+..++++.+-.++.... .. .....+..+--+|+..-... ..+ -.+..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a----------------~~~------seR~~ 458 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQA----------------NLK------SERDA 458 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcC----------------CCh------HHHHH
Confidence 3333 4566666666666655421 10 01111111111111000000 000 00112
Q ss_pred CHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038606 288 SIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLID 367 (666)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 367 (666)
...++++.+++..+.+ +.|......+.--|+..++++.|.+..++..+.+-..+...|..|.-
T Consensus 459 ~h~kslqale~av~~d-----------------~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLAL 521 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFD-----------------PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLAL 521 (799)
T ss_pred HHHHHHHHHHHHHhcC-----------------CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3456777888887766 55666666666678888999999999999988866788889998888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCchhhHHHHHHHHHhcCCHH
Q 038606 368 GLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQG-HEPWVKHNTLLIKELCKHGKAM 446 (666)
Q Consensus 368 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 446 (666)
.+...+++.+|+.+.+..... .+.|......-+..-..-++.++++..+..+...= ..+. ..+.++-.
T Consensus 522 vlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g 590 (799)
T KOG4162|consen 522 VLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEG 590 (799)
T ss_pred HHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------Hhhhhhhh
Confidence 888999999999999877654 12222222223333344677777777666655320 0000 00011111
Q ss_pred HHHHHHHHHHHc--CCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCcc------HHHHHHHHHHHHccCCHHHH
Q 038606 447 EAFRFLTDMVQE--GFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPD------VVAYNIIISGLCKAQRVAEA 518 (666)
Q Consensus 447 ~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a 518 (666)
...+....+.-. ...-.+.++..+..-....+....-...+...... ..|+ ...|......+.+.+..++|
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a 669 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEA 669 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHH
Confidence 111111111100 00111222222222111111000000001110000 1122 22455566777888888899
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHH--HHHHH
Q 038606 519 EDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIM--LWNEM 596 (666)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~ 596 (666)
...+.+.... .+.....|......+...|...+|.+.|......+| .++.+..++..++...|+..-|.. ++..+
T Consensus 670 ~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP--~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 670 RSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP--DHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred HHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 8888887765 334566777777788889999999999999988876 566788899999999999888888 99999
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038606 597 EEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEK 634 (666)
Q Consensus 597 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 634 (666)
.+.+ +.+...|..+...+.+.|+.++|.+.|....+.
T Consensus 747 lr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 747 LRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 9875 557999999999999999999999999998764
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=5e-13 Score=115.26 Aligned_cols=233 Identities=13% Similarity=0.115 Sum_probs=201.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC
Q 038606 70 NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG 149 (666)
Q Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (666)
..++.+|.+.|.+.+|.+.++..++. .|-+.++..|.++|.+..++..|+.+|.+..+.-|.+......+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34788999999999999999999885 4567788888999999999999999999999998888888888999999999
Q ss_pred ChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHH
Q 038606 150 EVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYS 229 (666)
Q Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 229 (666)
+.++|.++++...+.. +.++.....+...|.-.++++-|+.++.++...|+ .+...|+.+.-+|.-.+++|-++..|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999998875 44667777777788889999999999999999884 678889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 038606 230 EMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVG 309 (666)
Q Consensus 230 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 309 (666)
+.......|+.. ..+|..+.......|++.-|.+.|+-.+..+
T Consensus 383 RAlstat~~~~a-------------------------------aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d------ 425 (478)
T KOG1129|consen 383 RALSTATQPGQA-------------------------------ADVWYNLGFVAVTIGDFNLAKRCFRLALTSD------ 425 (478)
T ss_pred HHHhhccCcchh-------------------------------hhhhhccceeEEeccchHHHHHHHHHHhccC------
Confidence 988765555542 1678888888888999999999999988877
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038606 310 VEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG 354 (666)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 354 (666)
+.+..+++.+.-.-.+.|+++.|..++.......
T Consensus 426 -----------~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 426 -----------AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred -----------cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 7788899999999999999999999998887654
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.55 E-value=1.9e-12 Score=118.06 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=172.1
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
.+..+..++..+...|++++|.+.|+++.+.. |.+...+..++..+...|++++|.+.+++..+.++. +...+..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 46678889999999999999999999999876 677889999999999999999999999999987654 667788888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcC--CCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHG--WVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRV 186 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 186 (666)
..+...|++++|.+.++++.... +.....+..++.++...|++++|.+.+++.....+ .+...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCH
Confidence 99999999999999999998753 23455778888999999999999999999998753 3566788888999999999
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 187 DKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
++|...+++..+.. +.+...+..++..+...|+.++|..+.+.+..
T Consensus 186 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999988763 55677777888888899999999999888765
No 70
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.53 E-value=1.4e-09 Score=108.32 Aligned_cols=385 Identities=10% Similarity=-0.049 Sum_probs=236.0
Q ss_pred hchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 038606 11 IAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLK 90 (666)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 90 (666)
.+.+...+-+..+-.+. =..+|..|...|..-.+...|.+.|+.+-+.+ +.+..++......|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44455555444443322 35678999999999899999999999999988 7889999999999999999999999865
Q ss_pred HHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcc
Q 038606 91 EMQDYGWG-YDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLN 169 (666)
Q Consensus 91 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (666)
..-+..+. .-..-|....-.|...++..+|+..|+.....+|.|...|..++.+|.+.|.+..|.++|.++...++. +
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s 629 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-S 629 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-h
Confidence 55443221 122334446667888999999999999999999999999999999999999999999999999886422 2
Q ss_pred hhhHHHHHHhhhccCCHHHHHHHHHHHHhC------CCCccHHHHHHHHHhhhccCChhHHHHHHHHH-------HhCC-
Q 038606 170 EKTFCVLIHGFVKKSRVDKALQLFDKMTKS------GFASDAAMYDVIIGGLCKNKQLEMALQLYSEM-------KGSG- 235 (666)
Q Consensus 170 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~- 235 (666)
...--......+..|.+.+|+..+..+... +...-..++-.+...+...|-..+|...++.- ....
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 222112223345789999999888876542 11111223333333333333333333333222 1111
Q ss_pred -------------------CCCC---HHHHHHHHHhhhccCcH---H---HHHHHHHhhCCCCCccchHHHHHHHHHh--
Q 038606 236 -------------------ITPD---FEILSKLITSCSDEGEL---T---LLVKEIWEDRDVNTMTLLCNSIMRILVS-- 285 (666)
Q Consensus 236 -------------------~~~~---~~~~~~ll~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 285 (666)
+.|+ ......+..-.-..+.. + -..+........-.....|..++.-|.+
T Consensus 710 ~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f 789 (1238)
T KOG1127|consen 710 QSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYF 789 (1238)
T ss_pred hhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHH
Confidence 1122 11111111101111111 1 0111111111222224556666655443
Q ss_pred --c---C-CHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038606 286 --N---G-SIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNV 359 (666)
Q Consensus 286 --~---~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 359 (666)
. + +...|+..++...+.. ..+...|+.|.-. ...|++.-|...|-+-.... +...
T Consensus 790 ~~l~et~~~~~~Ai~c~KkaV~L~-----------------ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 790 LLLGETMKDACTAIRCCKKAVSLC-----------------ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHh-----------------hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccch
Confidence 1 2 2346778888777665 5566666666555 55567777777666555443 4556
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038606 360 FLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRK 419 (666)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 419 (666)
.+|..+.-.+.+..+++-|...|...+... +.|...|..........|+.-+...+|..
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 677777777777788888888887776653 33555565555555556666666666654
No 71
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.52 E-value=6.6e-10 Score=110.59 Aligned_cols=601 Identities=10% Similarity=-0.017 Sum_probs=355.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.+.+.+-.+.+. +...|...|-+.++.+ +.-...|..|+..|....+...|.+.|.++-+.+.. +...+..+...|
T Consensus 461 ~~~w~a~~~~rK-~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adty 536 (1238)
T KOG1127|consen 461 SEFWVALGCMRK-NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTY 536 (1238)
T ss_pred HHHHHHHHHhhh-hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHh
Confidence 345556666653 4889999999999887 456779999999999988999999999999987665 788889999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC--chHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVD--EHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
+...+++.|..+.-...+..+.. ...|...+-.|.+.++..+|+.-|+...+.++ .|...|..+..+|...|++..|
T Consensus 537 ae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 537 AEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred hccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehH
Confidence 99999999999855554444422 23455567789999999999999999999874 4888999999999999999999
Q ss_pred HHHHHHHHhCCCCccH-HHHHHHHHhhhccCChhHHHHHHHHHHhC------CCCCCHHHHHHHHHhhhccCcHH-----
Q 038606 190 LQLFDKMTKSGFASDA-AMYDVIIGGLCKNKQLEMALQLYSEMKGS------GITPDFEILSKLITSCSDEGELT----- 257 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~----- 257 (666)
.++|.+..... |+. ..---....-+..|++.+|+..+...... +...-..++......+...|=..
T Consensus 616 lKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~ 693 (1238)
T KOG1127|consen 616 LKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDF 693 (1238)
T ss_pred HHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 99999988663 332 22122233445688999998888776531 22222333333333332222111
Q ss_pred --HHHHHHHhh--CCCCCccchHHHHHHHH---HhcCCHHHH----HHHH-HHHHhCCCCCchhHHHHHh----hcCCCC
Q 038606 258 --LLVKEIWED--RDVNTMTLLCNSIMRIL---VSNGSIDQA----YNLL-QAMIKGEPIADVGVEMLMI----FKGTVS 321 (666)
Q Consensus 258 --~~~~~~~~~--~~~~~~~~~~~~l~~~~---~~~~~~~~A----~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~ 321 (666)
+.++.+.-. .....+...|-.+..++ +... ++.. ..++ .++...+..+......+.. ......
T Consensus 694 ~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~ 772 (1238)
T KOG1127|consen 694 FEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLA 772 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHh
Confidence 111110000 00011112222222111 1111 0000 0001 1111111111111000000 000112
Q ss_pred CCHHHHHHHHHHHHh----c----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 038606 322 PNTSSFDIIINTLLK----D----GKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPT 393 (666)
Q Consensus 322 ~~~~~~~~l~~~~~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 393 (666)
.+..+|..++..|.+ . .+...|...+.+..+.. ..+..+|+.|.-. ...|++.-+..-|-+-.... +..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 224445555444433 1 22346778888776654 3566677766544 56678888877776665542 456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH--HH--cCCCCChhhHHH
Q 038606 394 HFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDM--VQ--EGFLPDIVCYSA 469 (666)
Q Consensus 394 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~~~~~~~~~ 469 (666)
..+|..+.-.+....+++.|...|....... |.+...|..........|+.-+...+|..- .. .|-.++..-+..
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 7788888888999999999999999988765 556666666666667778888888877762 22 222344444444
Q ss_pred HHHHHHccCChHHHHHHHHHHHh---------cCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 038606 470 AIGGLIDIKRVDLALELFRDICA---------HGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITK-GLIPSVATYNL 539 (666)
Q Consensus 470 l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ 539 (666)
........|+.+.-+...+.+.. .+.+.+...|........+.+.+.+|.....+...- ..+.+...|+.
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44445566666555444433321 134667778888887777888888877776665431 01223444442
Q ss_pred ----HHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCC-HHHHHHHHH
Q 038606 540 ----LINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK-GCAPN-RITFMALIT 613 (666)
Q Consensus 540 ----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~ 613 (666)
+.+.+...|.++.|...+...... .+...-..-+.. .-.++++++.+.|+++..- +-..+ .+....++.
T Consensus 1009 ak~~~gRL~lslgefe~A~~a~~~~~~e----vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~ 1083 (1238)
T KOG1127|consen 1009 AKPDAGRLELSLGEFESAKKASWKEWME----VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAV 1083 (1238)
T ss_pred hhhhhhhhhhhhcchhhHhhhhcccchh----HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHH
Confidence 233455566676655544332211 111111111111 2347888888888887752 11112 233444555
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038606 614 GLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAF 650 (666)
Q Consensus 614 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 650 (666)
+....+..+.|...+-+..... +|+..+...+.-.+
T Consensus 1084 ~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ 1119 (1238)
T KOG1127|consen 1084 CMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVY 1119 (1238)
T ss_pred HHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHH
Confidence 5556777778887777776654 56665555554444
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=1.7e-09 Score=105.84 Aligned_cols=298 Identities=14% Similarity=0.062 Sum_probs=166.3
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV 110 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (666)
+.+......+...|++++|++.++.....- ..........+..+.+.|+.++|..+|..+++.++. |..-+..+..+
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~ 81 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHH
Confidence 445556677778888888888887766543 334455666677888888888888888888887654 55555555555
Q ss_pred HHhc-----CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC-hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 111 YCNS-----GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGE-VDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 111 ~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
..-. .+.+.-.++|+++....|..... ..+...+..-.. -..+..++..+..+|++ .+|+.+-..|....
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~-~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAP-RRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPE 157 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccch-hHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChh
Confidence 4222 24566677777776665432221 111111111111 23445555666666654 35555555555444
Q ss_pred CHHHHHHHHHHHHhC--------------CCCccHH--HHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038606 185 RVDKALQLFDKMTKS--------------GFASDAA--MYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLIT 248 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~--------------~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 248 (666)
..+-..+++...... .-+|+.. ++..+.+.|-..|++++|++++++.... .|+.
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~-------- 227 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL-------- 227 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc--------
Confidence 444444444443321 0123332 3344556666677777777777766664 3442
Q ss_pred hhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHH
Q 038606 249 SCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFD 328 (666)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (666)
...+..-.+++-..|++.+|.+.++.....+ ..|-..-+
T Consensus 228 ------------------------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-----------------~~DRyiNs 266 (517)
T PF12569_consen 228 ------------------------VELYMTKARILKHAGDLKEAAEAMDEARELD-----------------LADRYINS 266 (517)
T ss_pred ------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-----------------hhhHHHHH
Confidence 1344445556666666666666666666655 44555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 329 IIINTLLKDGKLDLALSLFREMTQIGCMQNVFL--------YNNLIDGLCNSNRLEESYELLREME 386 (666)
Q Consensus 329 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~ 386 (666)
..+..+.+.|++++|.+++....+.+..|.... ......+|.+.|++..|++.|..+.
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 556666666666666666666655442221111 1223455566666666665554443
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=1.3e-09 Score=106.81 Aligned_cols=308 Identities=13% Similarity=0.097 Sum_probs=209.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
...-....+...|++++|.+.++.-... +.......-.....+.+.|++++|..+|..+++.+|.+...|..+..+..-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 3334456678899999999999886554 332344555667888999999999999999999999887777777777633
Q ss_pred c-----CChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCH-HHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCCh
Q 038606 148 W-----GEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRV-DKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQL 221 (666)
Q Consensus 148 ~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 221 (666)
. .+.+...++++++.... |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 3 25677788888887764 3333333332223332233 34555666777777654 455555556555555
Q ss_pred hHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCcc--chHHHHHHHHHhcCCHHHHHHH
Q 038606 222 EMALQLYSEMKGS----GITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMT--LLCNSIMRILVSNGSIDQAYNL 295 (666)
Q Consensus 222 ~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~ 295 (666)
+-..+++...... +..+.. + ......|.. .++..+...|...|++++|+++
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~--------------~---------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~ 216 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNG--------------D---------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY 216 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCc--------------c---------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5555555555432 111100 0 000111222 3446667888899999999999
Q ss_pred HHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 038606 296 LQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRL 375 (666)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 375 (666)
++..+... |..+..|..-.+.+-+.|++.+|.+.++.....+ ..|...=+.....+.+.|+.
T Consensus 217 Id~aI~ht-----------------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 217 IDKAIEHT-----------------PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHhcC-----------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCH
Confidence 99999876 6678888889999999999999999999998876 35666666677778899999
Q ss_pred hHHHHHHHHHHhCCCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 376 EESYELLREMEESGFKPTHF--------TLNSMFRCLCRRQDVVGALNLVRKMRV 422 (666)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (666)
++|.+++....+.+..|... .......+|.+.|++..|++.|..+.+
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999887766433221 124456788888999888888777654
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=7.7e-09 Score=97.43 Aligned_cols=467 Identities=13% Similarity=0.080 Sum_probs=260.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.+..=+..+.++|++++|.+.-.+++... |.+..++..=+-++.+.+.|++|.++.+.-... ..+..-+..=.-+.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 34445566777899999999999999887 667778888888899999999998554443221 11111111222334
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcch-hhHHHHHHhhhccCCHHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE-KTFCVLIHGFVKKSRVDKAL 190 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~ 190 (666)
.+.+..++|+..++ ..++.+..+...-+..+.+.|++++|..+|+.+.+.+.+... ..-..++.+- -.-.+.
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~ 162 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ 162 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH
Confidence 47899999999888 233345667788888999999999999999999887543211 1111111111 001111
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHhhhccCcHHHHHHHHHhh
Q 038606 191 QLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT----PDFEILSKLITSCSDEGELTLLVKEIWED 266 (666)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 266 (666)
+.+...... ..+-..+....-.++..|++.+|+++++...+.+.+ -|. + -+....++
T Consensus 163 -~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~-------------~-eEeie~el--- 223 (652)
T KOG2376|consen 163 -LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDT-------------N-EEEIEEEL--- 223 (652)
T ss_pred -HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhccccc-------------c-hhhHHHHH---
Confidence 233332211 112223333455677899999999999988432110 010 0 00000000
Q ss_pred CCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHH----HHHHHHHHhcCChH-
Q 038606 267 RDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSF----DIIINTLLKDGKLD- 341 (666)
Q Consensus 267 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~- 341 (666)
......+..++-..|+..+|..+|..+++..+ +|.... |.++..-....-++
T Consensus 224 ------~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-----------------~D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 224 ------NPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-----------------ADEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred ------HHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-----------------CCchHHHHHhcchhhhccccccCch
Confidence 13345566778889999999999999998873 333222 22222111111111
Q ss_pred HHHHHHHHHHHcCC----------CCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hhc-C
Q 038606 342 LALSLFREMTQIGC----------MQNVFLYN-NLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCL-CRR-Q 408 (666)
Q Consensus 342 ~a~~~~~~~~~~~~----------~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~ 408 (666)
.++..++....... .......| .++..| .+..+.+.++...+... .|.. .+..++..+ ... .
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~ 355 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREK 355 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHH
Confidence 11112211111000 01111112 222222 23333444433333221 2333 333333333 222 2
Q ss_pred CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCChhhHHHHHHHHHccCCh
Q 038606 409 DVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLT--------DMVQEGFLPDIVCYSAAIGGLIDIKRV 480 (666)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 480 (666)
.+..+..++...-+........+....+......|+++.|.+++. .+.+.+ -.+.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCC
Confidence 466677777766655433334556666777888899999998888 444443 3344556667777777777
Q ss_pred HHHHHHHHHHHhc--CCCccHH----HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 038606 481 DLALELFRDICAH--GCCPDVV----AYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAM 554 (666)
Q Consensus 481 ~~a~~~~~~~~~~--~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 554 (666)
+.|..++.+.... ...+... ++.-+...-.+.|+.++|...++++.+. .++|..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 7777777765532 0011112 2333334445668888888888888875 356777888888887764 566776
Q ss_pred HHHHHH
Q 038606 555 LCLSRM 560 (666)
Q Consensus 555 ~~~~~~ 560 (666)
.+-+.+
T Consensus 512 ~l~k~L 517 (652)
T KOG2376|consen 512 SLSKKL 517 (652)
T ss_pred HHhhcC
Confidence 665554
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=2.4e-12 Score=111.17 Aligned_cols=225 Identities=11% Similarity=-0.027 Sum_probs=122.9
Q ss_pred hhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCCh
Q 038606 3 SILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSV 82 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (666)
+-+.|.|-..+|+..++..+.+. +-+++|..+.++|.+-..++.|+.+|.+.++.. |.++.......+.+-..++.
T Consensus 231 kCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHhH
Confidence 34455555555665555555544 235555556666666666666666665555543 44444444455555555666
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 83 DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 83 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
++|.++|+...+..+. +......+...|.-.++++-|...|.++++-|..++..|..++.++.-.++++-++..|+++.
T Consensus 307 ~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 6666666665554332 444444455555555666666666666666555555666666655555566666655555555
Q ss_pred hCCCCc--chhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 163 DCNIRL--NEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 163 ~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
..--.| -..+|..+.......|++..|.+.|.-....+ +.....++.|.-.-.+.|+.+.|..++.....
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 432212 22344455555555566666666665555443 33444555555555556666666666655544
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.49 E-value=3e-11 Score=99.57 Aligned_cols=202 Identities=13% Similarity=0.046 Sum_probs=178.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
+...++-.|..+|++..|.+-++.+++++ |.+..+|..+...|-+.|+.+.|.+.|++++...+. +..++|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 45678899999999999999999999998 778889999999999999999999999999998766 888999999999
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHG--WVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
+.+|.+++|...|+++.... +..+.+|.-++.+..+.|+.+.|...|++.++.++. ...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 99999999999999998764 246678999999999999999999999999998643 556677888889999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF 240 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 240 (666)
.-.++.....+ .++..+.-..|..-.+.|+.+.+.++=..+.+. .|..
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s 240 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYS 240 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCc
Confidence 99999999887 488888888899999999999888877777663 3544
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=3.7e-11 Score=111.53 Aligned_cols=221 Identities=11% Similarity=-0.001 Sum_probs=164.9
Q ss_pred hHhhhhchHHHHHHHHhhhh---cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCCh
Q 038606 6 SRARRIAPLRVLAQDVVKSR---CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSV 82 (666)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (666)
...++.+.++.-+.+++... ++..+..|..++..|...|++++|...|+++++.+ |.+...|+.++..+...|++
T Consensus 37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCH
Confidence 33456666777777777532 22234558899999999999999999999999987 77889999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 83 DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 83 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
++|...|+++++.++. +..++..+..++...|++++|.+.|++..+.+|.++.. ..........++.++|.+.|++..
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHH
Confidence 9999999999997655 66788888889999999999999999999998877632 222234456788999999997766
Q ss_pred hCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC---CC---CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 163 DCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS---GF---ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
... .++...+ .+... ..|+...+ +.++.+.+. .+ +.....|..+...+.+.|++++|...|++..+.+
T Consensus 193 ~~~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EKL-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hhC-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 442 2232222 23332 34555443 344444321 10 1234578999999999999999999999999854
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=8.4e-12 Score=113.75 Aligned_cols=194 Identities=13% Similarity=0.025 Sum_probs=167.9
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
+..+...|+.++|+..+++++... |.+...+..++..+...|++++|.+.|+++.+.. |.+...+..++..+...|+
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccc
Confidence 567778899999999999988754 5577888999999999999999999999999987 6778889999999999999
Q ss_pred hhHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHH
Q 038606 82 VDLVEMRLKEMQDYGWG-YDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIER 160 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (666)
+++|...|+++.+.... .....+..+...+...|++++|...++++....|.++..+..++..+...|++++|.+.+++
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999875322 23456777888899999999999999999999888888999999999999999999999999
Q ss_pred HhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC
Q 038606 161 MDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS 199 (666)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (666)
..+.. +.+...+..+...+...|+.++|..+.+.+...
T Consensus 195 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 98873 445666777788888999999999998887653
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=3.4e-09 Score=103.37 Aligned_cols=247 Identities=13% Similarity=0.117 Sum_probs=145.1
Q ss_pred hHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHc--------CCCCCChhhHHHHHHHHH
Q 038606 6 SRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKRE--------GLCVPNNYSYNCLLEALC 77 (666)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~ 77 (666)
...|+++.|-.-++-|. |..++..+++.+.+..+.+-|.-.+-.|... ..-.|+ ++=........
T Consensus 739 vtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 34466666655554443 4568888888888888888777665433211 100111 22233344456
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHH
Q 038606 78 KSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACEL 157 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (666)
..|..++|..+|++..+. -.+-..|-..|.+++|.++-+.--..+ -..+|...+.-+...++.+.|+++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHH
Confidence 778888888888888763 233455667788888887765422222 234677777777788888888888
Q ss_pred HHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC
Q 038606 158 IERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT 237 (666)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (666)
|++.-.. --.++ .++. .++.....+.+++ .|...|.-..+.+-..|+.+.|+.+|...+.
T Consensus 881 yEK~~~h----afev~-rmL~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 881 YEKAGVH----AFEVF-RMLK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHhcCCh----HHHHH-HHHH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 8775432 11111 1221 1222333333332 3445666666666778888888888877643
Q ss_pred CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhc
Q 038606 238 PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFK 317 (666)
Q Consensus 238 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (666)
|..+++..+-.|+.++|-++-++
T Consensus 941 --------------------------------------~fs~VrI~C~qGk~~kAa~iA~e------------------- 963 (1416)
T KOG3617|consen 941 --------------------------------------YFSMVRIKCIQGKTDKAARIAEE------------------- 963 (1416)
T ss_pred --------------------------------------hhhheeeEeeccCchHHHHHHHh-------------------
Confidence 44455555556666666655544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038606 318 GTVSPNTSSFDIIINTLLKDGKLDLALSLFREM 350 (666)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 350 (666)
..|..+...+.+.|-..|++.+|...|.+.
T Consensus 964 ---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 964 ---SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ---cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445555555666666666666666666554
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1e-08 Score=92.14 Aligned_cols=271 Identities=14% Similarity=0.088 Sum_probs=179.8
Q ss_pred CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 038606 166 IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSK 245 (666)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 245 (666)
++.|+.....+...+...|+.++|+..|+...-.+ +-+..........+.+.|+++....+...+....- -..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta----- 300 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTA----- 300 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cch-----
Confidence 35567777788888888888888888888777543 22222223333445567777777776666654210 000
Q ss_pred HHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHH
Q 038606 246 LITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTS 325 (666)
Q Consensus 246 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (666)
.-|..-+......+++..|+.+-++.++.+ +.+..
T Consensus 301 ----------------------------~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-----------------~r~~~ 335 (564)
T KOG1174|consen 301 ----------------------------SHWFVHAQLLYDEKKFERALNFVEKCIDSE-----------------PRNHE 335 (564)
T ss_pred ----------------------------hhhhhhhhhhhhhhhHHHHHHHHHHHhccC-----------------cccch
Confidence 233444455566778888888888888776 66777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHH
Q 038606 326 SFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMF-RCL 404 (666)
Q Consensus 326 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~ 404 (666)
.+-.-...+...|+.++|.-.|+...... |-+..+|..|++.|...|++.+|.-.-+...+. ++-+..++..+. ..+
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 77777788888899999998898887654 457788999999999999998888766665443 233555555442 222
Q ss_pred -HhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHH
Q 038606 405 -CRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLA 483 (666)
Q Consensus 405 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 483 (666)
.....-++|.+++++.+... |.-......+...+...|...+++.+++..+.. .||....+.+.+.+...+.+++|
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred ccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHH
Confidence 22334466777777666543 334445556666677777777777777777765 56777777777777777777777
Q ss_pred HHHHHHHHhc
Q 038606 484 LELFRDICAH 493 (666)
Q Consensus 484 ~~~~~~~~~~ 493 (666)
++.|......
T Consensus 491 m~~y~~ALr~ 500 (564)
T KOG1174|consen 491 MEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHhc
Confidence 7777776664
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=5.9e-08 Score=87.43 Aligned_cols=266 Identities=15% Similarity=0.066 Sum_probs=133.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038606 274 LLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQI 353 (666)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 353 (666)
.....+.+++...|+.++|+..|++..-.+ +-+........-.+.+.|+.++...+...+...
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-----------------py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCAN-----------------PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCC-----------------hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 445556666667777777777777666544 333334444444555666666666666665543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHH
Q 038606 354 GCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNT 433 (666)
Q Consensus 354 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (666)
. .-....|-.-+......++++.|+.+-++..+.+ +.+...+-.-...+...+..++|.-.|+...... |.+...|.
T Consensus 296 ~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~ 372 (564)
T KOG1174|consen 296 V-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYR 372 (564)
T ss_pred h-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHH
Confidence 2 1122223222333344556666666666665542 2233334333445556666666666666655442 34555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-HHHH-ccCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHH
Q 038606 434 LLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAI-GGLI-DIKRVDLALELFRDICAHGCCPD-VVAYNIIISGLC 510 (666)
Q Consensus 434 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 510 (666)
.++.+|...|...+|.-.-+...+. ++.+..+.+.+. ..+. ...--++|.++++..... .|+ ....+.+...|.
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHH
Confidence 6666666666666665555444432 122333333321 1111 112224455555544443 222 223344444555
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcC
Q 038606 511 KAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKE 564 (666)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 564 (666)
..|..++++.++++.... .||....+.|.+.+...+.+.+|++.|......+
T Consensus 450 ~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 555555555555555542 3455555555555555555555555555555443
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.40 E-value=4.1e-08 Score=94.88 Aligned_cols=404 Identities=13% Similarity=0.107 Sum_probs=198.8
Q ss_pred HhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038606 7 RARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVE 86 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (666)
++..|..|+.+++-+.++. .....|..++..|...|+++.|.++|-..- .+.-.+.+|.++|.++.|.
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHH
Confidence 4566777777776665544 234456667777777777777777775433 2334566677777777777
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 038606 87 MRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI 166 (666)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (666)
++-++.. |++.....|.+-..-.-..|++.+|.++|-.+-. -...+..|-+.|..+..+++.++-....
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~--------p~~aiqmydk~~~~ddmirlv~k~h~d~- 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--------PDKAIQMYDKHGLDDDMIRLVEKHHGDH- 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC--------chHHHHHHHhhCcchHHHHHHHHhChhh-
Confidence 7665553 2333334444444445556666666665522211 1233455666666666666555443221
Q ss_pred CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 038606 167 RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKL 246 (666)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (666)
-..|...+..-|-..|++..|..-|-+... |..-+..|...+-+++|.++-+. .|- .+..- .+
T Consensus 881 --l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg-~n~~k--~v 943 (1636)
T KOG3616|consen 881 --LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGG-ANAEK--HV 943 (1636)
T ss_pred --hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---ccc-ccHHH--HH
Confidence 223445555566666777777665554331 44445555555555555443321 111 11111 11
Q ss_pred HHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHH
Q 038606 247 ITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSS 326 (666)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (666)
+-.+.++---+.+++.+.+. -....-+..-+.++.++-|.++-+-..+.. .+. .
T Consensus 944 ~flwaksiggdaavkllnk~-------gll~~~id~a~d~~afd~afdlari~~k~k-----------------~~~--v 997 (1636)
T KOG3616|consen 944 AFLWAKSIGGDAAVKLLNKH-------GLLEAAIDFAADNCAFDFAFDLARIAAKDK-----------------MGE--V 997 (1636)
T ss_pred HHHHHHhhCcHHHHHHHHhh-------hhHHHHhhhhhcccchhhHHHHHHHhhhcc-----------------Ccc--c
Confidence 11111111111111111111 122333444556666777766666555432 222 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-------------------HHHHHHHhcCChhHHHHHHHHHHh
Q 038606 327 FDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYN-------------------NLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 327 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------------~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
...+...+-..|++++|-+-+-+..+.+ .-..+|. ..+.++.+.++|..|.++-+.-..
T Consensus 998 hlk~a~~ledegk~edaskhyveaikln--tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~ 1075 (1636)
T KOG3616|consen 998 HLKLAMFLEDEGKFEDASKHYVEAIKLN--TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCE 1075 (1636)
T ss_pred hhHHhhhhhhccchhhhhHhhHHHhhcc--cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhCh
Confidence 2334455667788888877777666543 1111121 112234444444444444332111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-----------
Q 038606 388 SGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMV----------- 456 (666)
Q Consensus 388 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------- 456 (666)
. .-..++..-.+.....|++..|..++-+.. .|+. .++.|...+.+.+|+++.+...
T Consensus 1076 ~---~l~dv~tgqar~aiee~d~~kae~fllran----kp~i-----~l~yf~e~~lw~dalri~kdylp~q~a~iqeey 1143 (1636)
T KOG3616|consen 1076 D---LLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPDI-----ALNYFIEAELWPDALRIAKDYLPHQAAAIQEEY 1143 (1636)
T ss_pred h---hhHHHHhhhhhccccccchhhhhhheeecC----CCch-----HHHHHHHhccChHHHHHHHhhChhHHHHHHHHH
Confidence 0 011234444455555666666665554332 3332 3344455556666655544321
Q ss_pred -----HcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHH
Q 038606 457 -----QEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDIC 491 (666)
Q Consensus 457 -----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 491 (666)
+.| .-....+..-..-+-+.|++.+|...+-++-
T Consensus 1144 ek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~lkin 1182 (1636)
T KOG3616|consen 1144 EKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALLKIN 1182 (1636)
T ss_pred HHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHhhhc
Confidence 222 1233444455556667788888877776653
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.5e-10 Score=107.47 Aligned_cols=233 Identities=11% Similarity=-0.024 Sum_probs=170.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVP--NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN 113 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (666)
+.......+..+.++..+.+++......| ....|..++..+...|++++|...|+++++.++. ++..++.+...+..
T Consensus 32 ~~~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~ 110 (296)
T PRK11189 32 LAVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQ 110 (296)
T ss_pred cccccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 44455556778899999999986542112 2457888999999999999999999999998665 78899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHH
Q 038606 114 SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLF 193 (666)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 193 (666)
.|++++|.+.|+++.+.+|.+..++..++.++...|++++|.+.|++..+.++ +..........+...+++++|...|
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998753 2222222222344578899999999
Q ss_pred HHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCcc
Q 038606 194 DKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMT 273 (666)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (666)
++..... +++...+ .......|+...+ +.++.+.+. +..+...- ....
T Consensus 189 ~~~~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~-~~~~~~l~--------------------------~~~~ 236 (296)
T PRK11189 189 KQRYEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAG-ATDNTELA--------------------------ERLC 236 (296)
T ss_pred HHHHhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhc-CCCcHHHH--------------------------HHHH
Confidence 7765432 2332222 2223345666554 355555432 11111000 0012
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 274 LLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
..|..+...+.+.|++++|...|++.....
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 578889999999999999999999999876
No 84
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=7.5e-07 Score=89.54 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 358 NVFLYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 358 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
|+...+..+.++...+-+.+-.++++++.-
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL 1012 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVL 1012 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 444455556677777777777777777753
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=3e-09 Score=91.17 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=138.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
-+...+..+.+..++++|++++..-.+.. |.+......|+.+|....++..|...|+++-...++....-+ --.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl-Y~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL-YQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH-HHHHHH
Confidence 35556666677788899999988888876 567888888888888999999999999888765433221111 123445
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQ 191 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 191 (666)
.+.+.+..|+.+...+.........+...-.......+++..+..+.++....+ +..+.+...-...+.|+++.|++
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 577888888888877766422222233333345566788888888888877543 44455555555668899999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC
Q 038606 192 LFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT 237 (666)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (666)
-|+...+.+--.....|+.-+ ++.+.|+++.|++...++.++|++
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 999888754344455676544 455778999999999999888765
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.5e-08 Score=94.61 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-------H
Q 038606 328 DIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNS-------M 400 (666)
Q Consensus 328 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l 400 (666)
..+.+...+..+++.|++-+....... .+..-++....+|...|.+.+....-....+.|.. ...-++. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 345556666666777777766666654 44445555666666666666655555554444311 1112222 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHccCC
Q 038606 401 FRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDI-VCYSAAIGGLIDIKR 479 (666)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 479 (666)
..+|.+.++++.++..|.+.......|+. ..+....+++........-.+ |.. .-...-...+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 33555566777777777776544323221 122233333433333333222 221 111222455667788
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChhHHHHHHH
Q 038606 480 VDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPS-VATYNLLINGWCKSGNIDQAMLCLS 558 (666)
Q Consensus 480 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 558 (666)
+..|+..|.+++... |.|...|..-..+|.+.|.+..|+.=.+..++. .|+ ...|..-..++....++++|.+.|.
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877764 667777777777888888888887777777765 333 3344444555555667888888888
Q ss_pred HHHhcCC
Q 038606 559 RMLEKES 565 (666)
Q Consensus 559 ~~~~~~~ 565 (666)
+..+.++
T Consensus 451 eale~dp 457 (539)
T KOG0548|consen 451 EALELDP 457 (539)
T ss_pred HHHhcCc
Confidence 7777643
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.5e-08 Score=94.71 Aligned_cols=91 Identities=10% Similarity=-0.003 Sum_probs=49.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCH
Q 038606 366 IDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKA 445 (666)
Q Consensus 366 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 445 (666)
...+.+.|++..|...|.++++.. +-|...|....-+|.+.|.+..|+.-.+..++.+ ++....|..-..++....++
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666654 4455566666666666666666666655555542 33333333333344444455
Q ss_pred HHHHHHHHHHHHc
Q 038606 446 MEAFRFLTDMVQE 458 (666)
Q Consensus 446 ~~a~~~~~~~~~~ 458 (666)
++|...|.+..+.
T Consensus 443 dkAleay~eale~ 455 (539)
T KOG0548|consen 443 DKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555444
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=2.1e-09 Score=92.07 Aligned_cols=185 Identities=15% Similarity=0.117 Sum_probs=142.6
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhH-HHHHHHHHhcCChh
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSY-NCLLEALCKSCSVD 83 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 83 (666)
|.+..+...++++++.-.... |.+...+..++-+|....++..|...|+++.... |...-| .--.+++.+.+.+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHHHHHhcccH
Confidence 367888999999987766543 4478889999999999999999999999999865 444333 33577889999999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHH----HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHH
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLL----QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIE 159 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (666)
.|..+...+.+. ....+..+ ......+++..+..+.++....+ +..+..-.+....+.|+++.|.+-|+
T Consensus 96 DALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en--~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 96 DALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN--EADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC--ccchhccchheeeccccHHHHHHHHH
Confidence 999999988653 11222211 22236789999999998887543 55566777778889999999999999
Q ss_pred HHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCC
Q 038606 160 RMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGF 201 (666)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 201 (666)
...+.+.-.....|+..+..| +.|+++.|++...++.++|+
T Consensus 169 aAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 999876444566777666544 78999999999999988774
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=5.7e-10 Score=92.20 Aligned_cols=198 Identities=13% Similarity=0.005 Sum_probs=171.8
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhH
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDL 84 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (666)
+...|+...|..-++.++.+.+. +..++..++..|.+.|..+.|.+.|++++... |.+..+.+..+..+|..|.+++
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChHH
Confidence 45678999999999999997644 88889999999999999999999999999988 7889999999999999999999
Q ss_pred HHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 85 VEMRLKEMQDYGW-GYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 85 A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
|...|+++..... .....++..++-+..+.|+++.|.+.|++.+..+|..+.....+.....+.|++..|...++....
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 9999999988632 224567888888888999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHH
Q 038606 164 CNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMY 208 (666)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 208 (666)
.+. ++....-..|..-...|+.+.+-++=..+... -|...-|
T Consensus 202 ~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 202 RGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred ccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence 875 67777777788888899998888876666654 3444433
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.32 E-value=7.7e-09 Score=100.55 Aligned_cols=311 Identities=13% Similarity=-0.024 Sum_probs=169.9
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChh---hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNY---SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
.+..+..++..+...|+.+.+.+.+....+.. +++.. ........+...|++++|.+.++++.+..+. +...+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~ 81 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQAL--AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALK 81 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHH
Confidence 45556667777777777777777777766554 22322 2223344566777888888888887776443 333333
Q ss_pred HHHHHHH----hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhh
Q 038606 106 PLLQVYC----NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFV 181 (666)
Q Consensus 106 ~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (666)
. ...+. ..+....+.+.++......+........++..+...|++++|.+.+++..+.. +.+...+..+..++.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 1 11222 23444444444444222333333444556667777888888888888887765 334556677777777
Q ss_pred ccCCHHHHHHHHHHHHhCCC-CccH--HHHHHHHHhhhccCChhHHHHHHHHHHhCCC-CCCHHHH-H--HHHHhhhccC
Q 038606 182 KKSRVDKALQLFDKMTKSGF-ASDA--AMYDVIIGGLCKNKQLEMALQLYSEMKGSGI-TPDFEIL-S--KLITSCSDEG 254 (666)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~ll~~~~~~~ 254 (666)
..|++++|...+++...... .++. ..|..+...+...|++++|..+|++...... .+..... . .++..+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 78888888888877765431 1222 2345667777788888888888877754322 1111111 1 2222222222
Q ss_pred cHH--HH----HHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHH
Q 038606 255 ELT--LL----VKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFD 328 (666)
Q Consensus 255 ~~~--~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (666)
... .. ..........+...........++...|+.+.|..+++.+........ . .+..........
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~-~-------~~~~~~~~~~~~ 311 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSAD-D-------NKQPARDVGLPL 311 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccC-c-------hhhhHHhhhHHH
Confidence 111 11 111111111111222333567778889999999999998876431100 0 000011122222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 038606 329 IIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 329 ~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
...-.+...|+.+.|.+.+.....
T Consensus 312 l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 312 AEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333445577888888887777654
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=4.7e-10 Score=108.27 Aligned_cols=247 Identities=17% Similarity=0.161 Sum_probs=173.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHc--------CCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC-----C--
Q 038606 101 KYTLTPLLQVYCNSGQFDKALSVFNEIIDH--------GWVDEHVFSILLVAFSKWGEVDKACELIERMDDC-----N-- 165 (666)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-- 165 (666)
..+...+...|...|+++.|..+++...+. .+.-......++..|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345566889999999999999999988765 2222234566888999999999999999998753 1
Q ss_pred CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC------CCCccHH-HHHHHHHhhhccCChhHHHHHHHHHHhC---C
Q 038606 166 IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS------GFASDAA-MYDVIIGGLCKNKQLEMALQLYSEMKGS---G 235 (666)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 235 (666)
-+.-..+++.|...|.+.|++++|...+++..+. ..+|++. .++.++..+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 1112345777888899999999999888876541 1133433 3566777888899999999999876652 1
Q ss_pred CCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHh
Q 038606 236 ITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMI 315 (666)
Q Consensus 236 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 315 (666)
+.++... ....+..+...|...|++++|.++++++......
T Consensus 359 ~g~~~~~-----------------------------~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~---------- 399 (508)
T KOG1840|consen 359 PGEDNVN-----------------------------LAKIYANLAELYLKMGKYKEAEELYKKAIQILRE---------- 399 (508)
T ss_pred ccccchH-----------------------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh----------
Confidence 1122111 1256788999999999999999999988753211
Q ss_pred hcCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 316 FKGT-VSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ----IG--CMQNVFLYNNLIDGLCNSNRLEESYELLREME 386 (666)
Q Consensus 316 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 386 (666)
..+. ..-....++.+...|.+.+....|.++|.+... .| .+....+|..|...|...|+++.|.++.+.+.
T Consensus 400 ~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 400 LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0111 122345677888888888888888888876533 22 12234567778888888888888887776664
No 92
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=4e-10 Score=108.70 Aligned_cols=246 Identities=17% Similarity=0.117 Sum_probs=147.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDY-----GW-GYDKY-TLTPLLQVYCNSGQFDKALSVFNEIIDH-----GWV 133 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~ 133 (666)
..+...+...|...|++++|..+++..++. |. -|... ..+.+...|...+++.+|+.+|+++.+. |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555666666666666666666666553 10 11222 2223555666667777777777766542 333
Q ss_pred Cc---hHHHHHHHHHHhcCChhhHHHHHHHHhhC-----C-CCcch-hhHHHHHHhhhccCCHHHHHHHHHHHHhC---C
Q 038606 134 DE---HVFSILLVAFSKWGEVDKACELIERMDDC-----N-IRLNE-KTFCVLIHGFVKKSRVDKALQLFDKMTKS---G 200 (666)
Q Consensus 134 ~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 200 (666)
++ .++..|..+|.+.|++++|..+++++.+. + ..+.+ ..++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 33 24555666677777777776666665431 1 11222 22445556667777788777777765431 1
Q ss_pred CC----ccHHHHHHHHHhhhccCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCc
Q 038606 201 FA----SDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS----GITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTM 272 (666)
Q Consensus 201 ~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (666)
+. .-..+++.|...|...|++++|.++|+++... +-..+..+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~------------------------------ 408 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV------------------------------ 408 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh------------------------------
Confidence 11 12457788888888888888888888877642 12112211
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038606 273 TLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMT 351 (666)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 351 (666)
....+.+...|.+.+.+.+|.++|....... ..+...-+....+|..|...|...|+++.|.++.+.+.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~----------~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIM----------KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHH----------HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1445667777777777777777776654311 11122224556678899999999999999999888775
No 93
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.31 E-value=1.1e-07 Score=91.96 Aligned_cols=310 Identities=16% Similarity=0.126 Sum_probs=178.4
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhH
Q 038606 144 AFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEM 223 (666)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 223 (666)
.+...|+++.|+..|-+... ....+.+.....++.+|+.+++.+.... .-...|..+...|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 44445556665555543322 2234555667788899999999887653 334457778888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038606 224 ALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGE 303 (666)
Q Consensus 224 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 303 (666)
|.++|.+.-. +...+..|.+.|.+.++++...+..+++.....|..-..-+-+.|.+.+|.++|-.+.
T Consensus 784 ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 784 AEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 9999866421 2344666777777777777666666666655666665666667777777777765443
Q ss_pred CCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 038606 304 PIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLR 383 (666)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 383 (666)
.|+. .|..|-+.|..++.+++.++-.. ..-..|...+..-+...|+...|...|-
T Consensus 852 -----------------~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 852 -----------------EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred -----------------CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 3332 35566677777766666554321 1112334445556666777777776664
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038606 384 EMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPD 463 (666)
Q Consensus 384 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 463 (666)
+..+ |......|..++-|+.|.++-+. .| ....-..++-.+.+.--.+.|.+++.+.-
T Consensus 907 ea~d---------~kaavnmyk~s~lw~dayriakt---eg---g~n~~k~v~flwaksiggdaavkllnk~g------- 964 (1636)
T KOG3616|consen 907 EAGD---------FKAAVNMYKASELWEDAYRIAKT---EG---GANAEKHVAFLWAKSIGGDAAVKLLNKHG------- 964 (1636)
T ss_pred hhhh---------HHHHHHHhhhhhhHHHHHHHHhc---cc---cccHHHHHHHHHHHhhCcHHHHHHHHhhh-------
Confidence 4332 34455566666666666554432 11 11111222233333333444555544321
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 038606 464 IVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITK 528 (666)
Q Consensus 464 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 528 (666)
....-++..+..+.++-|.++-+-..+.. .|.+.. .+...+...|++++|.+.+-+.++.
T Consensus 965 --ll~~~id~a~d~~afd~afdlari~~k~k-~~~vhl--k~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 965 --LLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVHL--KLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred --hHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccchh--HHhhhhhhccchhhhhHhhHHHhhc
Confidence 11223344456677777777666555442 233222 2333456678888888877777664
No 94
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.9e-06 Score=86.83 Aligned_cols=145 Identities=13% Similarity=0.066 Sum_probs=83.7
Q ss_pred hchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHH-----HHHHHHhcCChhHH
Q 038606 11 IAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNC-----LLEALCKSCSVDLV 85 (666)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A 85 (666)
.-++.++.+.++.++...+-+ ...+++.+.++|-+..|++.|..+.... ....... .+..|.-.-.++.+
T Consensus 588 L~~aPqVADAILgN~mFtHyD-ra~IAqLCEKAGL~qraLehytDl~DIK----R~vVhth~L~pEwLv~yFg~lsve~s 662 (1666)
T KOG0985|consen 588 LVHAPQVADAILGNDMFTHYD-RAEIAQLCEKAGLLQRALEHYTDLYDIK----RVVVHTHLLNPEWLVNYFGSLSVEDS 662 (1666)
T ss_pred hccchHHHHHHHhcccccccc-HHHHHHHHHhcchHHHHHHhcccHHHHH----HHHHHhccCCHHHHHHHHHhcCHHHH
Confidence 344555666666665553333 6778888888888888887776654321 0111111 12234444567777
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC------------CCCchHHHHHHHHHHhcCChhh
Q 038606 86 EMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHG------------WVDEHVFSILLVAFSKWGEVDK 153 (666)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~g~~~~ 153 (666)
.+.++.|+..++.-|..+...+..-|...=..+.-+++|+...+-. ..||++....+.+.++.|++.+
T Consensus 663 ~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikE 742 (1666)
T KOG0985|consen 663 LECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKE 742 (1666)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHH
Confidence 7777777776666555555555555554444555555555544321 1466677777777777777777
Q ss_pred HHHHHHH
Q 038606 154 ACELIER 160 (666)
Q Consensus 154 A~~~~~~ 160 (666)
.+++.++
T Consensus 743 vERicre 749 (1666)
T KOG0985|consen 743 VERICRE 749 (1666)
T ss_pred HHHHHhc
Confidence 6666543
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.30 E-value=2.8e-08 Score=87.11 Aligned_cols=318 Identities=9% Similarity=0.026 Sum_probs=197.0
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH-HHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL-TPLL 108 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~ 108 (666)
..-...+.+.+..+|.+.+|+..|..+.+.+ |.+-.++..-...|...|....|..=+.++++. .||.... ..-.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3445678899999999999999999999887 677778889999999999999999999999885 4553321 2234
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDK 188 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 188 (666)
..+.++|.+++|..=|+.+++.+|.+... .+|..-+..+.+ .......+..+...|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~--------------~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ 173 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLV--------------LEAQSKLALIQE------HWVLVQQLKSASGSGDCQN 173 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchh--------------HHHHHHHHhHHH------HHHHHHHHHHHhcCCchhh
Confidence 56778999999999999999988743221 111111111111 1112222333445677777
Q ss_pred HHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCC
Q 038606 189 ALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRD 268 (666)
Q Consensus 189 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 268 (666)
|+++...+++.. +-|+..|..-..+|...|++..|+.=++...+.... +.
T Consensus 174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nT---------------------------- 223 (504)
T KOG0624|consen 174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NT---------------------------- 223 (504)
T ss_pred HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-ch----------------------------
Confidence 777777777654 455666666677777777777776666555443211 11
Q ss_pred CCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHH------------HHHHHHh
Q 038606 269 VNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDI------------IINTLLK 336 (666)
Q Consensus 269 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~ 336 (666)
..+..+-..+...|+.+.++...+..++.+ |....+|.. -+.....
T Consensus 224 -----e~~ykis~L~Y~vgd~~~sL~~iRECLKld-----------------pdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 224 -----EGHYKISQLLYTVGDAENSLKEIRECLKLD-----------------PDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred -----HHHHHHHHHHHhhhhHHHHHHHHHHHHccC-----------------cchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555555555555555443 111111110 0122345
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038606 337 DGKLDLALSLFREMTQIGCMQNV---FLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGA 413 (666)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 413 (666)
.+++.++++..+...+....... ..+..+..++...+++.+|++...+.++.. +.|..++.--..+|.-..+++.|
T Consensus 282 ~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHH
Confidence 56677777777766665422112 223345556666777888888777777652 33466777777777777778888
Q ss_pred HHHHHHHHHcC
Q 038606 414 LNLVRKMRVQG 424 (666)
Q Consensus 414 ~~~~~~~~~~~ 424 (666)
+.-|+...+.+
T Consensus 361 I~dye~A~e~n 371 (504)
T KOG0624|consen 361 IHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhcC
Confidence 88777777653
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.9e-06 Score=84.83 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=125.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 038606 34 GFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN 113 (666)
Q Consensus 34 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (666)
...+......|..++|+.+|.+..+.+ .|=..|-..|.+++|.++.+.-.+.. =..+|.....-+..
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEA 870 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHh
Confidence 345555566788888888888887654 23345667788888888776554322 22345555555556
Q ss_pred cCChhHHHHHHHHHH----------HcCC----------CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhH
Q 038606 114 SGQFDKALSVFNEII----------DHGW----------VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTF 173 (666)
Q Consensus 114 ~~~~~~A~~~~~~~~----------~~~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (666)
.++.+.|++.|++.- ..+| .++..|.+.+..+-..|+++.|+.+|..+.+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 677777777776432 2222 3667788888888899999999999988765 4
Q ss_pred HHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 174 CVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
-++++..+-+|+.++|-++-++ ..|......+.+.|-..|++.+|...|.+...
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 5678888889999999888776 45667777889999999999999999988753
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.26 E-value=4.8e-08 Score=95.03 Aligned_cols=311 Identities=10% Similarity=-0.014 Sum_probs=193.2
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG-YDK-YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSI 140 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 140 (666)
|.....|..+...+...|+.+.+...+.+..+.... .+. .........+...|++++|.+.++++....|.+..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 455678888888898999999988888887765432 121 122222345567899999999999999998887766653
Q ss_pred HHHHHHh----cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhh
Q 038606 141 LLVAFSK----WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLC 216 (666)
Q Consensus 141 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (666)
...+.. .|....+.+.+...... .+........+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 333333 45555555555542222 12233444556667889999999999999999876 566778889999999
Q ss_pred ccCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHH
Q 038606 217 KNKQLEMALQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNL 295 (666)
Q Consensus 217 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 295 (666)
..|++++|..++++....... |+.. ...+..+...+...|++++|..+
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~-------------------------------~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLR-------------------------------GHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchh-------------------------------HHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998764321 1210 02355677889999999999999
Q ss_pred HHHHHhCCCCCchhHHHHHhhcCCCCCCHHHH-H--HHHHHHHhcCChHHHHHH--H-HHHHHcCC-CCCHHHHHHHHHH
Q 038606 296 LQAMIKGEPIADVGVEMLMIFKGTVSPNTSSF-D--IIINTLLKDGKLDLALSL--F-REMTQIGC-MQNVFLYNNLIDG 368 (666)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~ 368 (666)
+++.....+. .+..... + .++..+...|....+..+ + ........ ............+
T Consensus 209 ~~~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 209 YDTHIAPSAE---------------SDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHhccccC---------------CChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 9998644310 1111111 1 233444445544433333 2 22111100 1111222245566
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 369 LCNSNRLEESYELLREMEESGFKP--------THFTLNSMFRCLCRRQDVVGALNLVRKMRV 422 (666)
Q Consensus 369 ~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 422 (666)
+...|+.+.|..+++.+......+ .........-++...|+++.|.+.+.....
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677888888888888876532110 011112222334566777777777666554
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.7e-09 Score=101.70 Aligned_cols=227 Identities=14% Similarity=0.122 Sum_probs=183.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNS 114 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (666)
.-+.-+.++|+..+|.-+|+.+.+.+ |.+.++|..|+.....+++-..|+..+++.++.++. |..++..|...|...
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhh
Confidence 45566788899999999999999998 789999999999999999999999999999998766 778888898999999
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHH---------HHHHhcCChhhHHHHHHHHhhCC-CCcchhhHHHHHHhhhccC
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILL---------VAFSKWGEVDKACELIERMDDCN-IRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 184 (666)
|.-..|...+++-+...|.. .+.... .............++|-++.... ..+|+.+...|.-.|--.|
T Consensus 367 g~q~~Al~~L~~Wi~~~p~y--~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 367 GLQNQALKMLDKWIRNKPKY--VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhHHHHHHHHHHHHHhCccc--hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999999877655321 111000 11122223444556665555443 3378888888988899999
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHH
Q 038606 185 RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIW 264 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 264 (666)
++++|.+.|+..+... |.|...||-|...++...+.++|+..|.+.++ +.|..
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y------------------------ 497 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY------------------------ 497 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe------------------------
Confidence 9999999999998876 67888999999999999999999999999998 57775
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 265 EDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
..+...|.-.|+..|.+++|...|-..+.
T Consensus 498 --------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 498 --------VRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred --------eeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 36778888899999999999999876654
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=6.1e-08 Score=85.07 Aligned_cols=295 Identities=10% Similarity=0.018 Sum_probs=198.6
Q ss_pred hHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHHHhcCChhH
Q 038606 6 SRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN-YSYNCLLEALCKSCSVDL 84 (666)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 84 (666)
...|++..|..-+...+. +.|.+--++...+..|..-|+-..|+.=+.++++.. ||- .+...-+..+.++|.++.
T Consensus 49 la~~Q~sDALt~yHaAve-~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVE-GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHhhhHHHHHHHHHHHHc-CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchhhhhcccHHH
Confidence 344677777777766665 545566667788899999999999999999999875 564 456667888999999999
Q ss_pred HHHHHHHHHhcCCCCCc--ccH------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC
Q 038606 85 VEMRLKEMQDYGWGYDK--YTL------------TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGE 150 (666)
Q Consensus 85 A~~~~~~~~~~~~~~~~--~~~------------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (666)
|..=|+.+++.++..+. ..+ ...+..+...|+...|++....+++..|.+...+..-..+|...|+
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 99999999987653211 111 1123344567899999999999999998888889999999999999
Q ss_pred hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHH----H---------HHhhhc
Q 038606 151 VDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDV----I---------IGGLCK 217 (666)
Q Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l---------~~~~~~ 217 (666)
+..|+.-+..+.+.. ..++.++-.+-..+...|+.+.++....+.++.+ ||-..+-. + +.....
T Consensus 205 ~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie 281 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIE 281 (504)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888777664 3456666667777888999999999999888763 55442211 1 011122
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHH
Q 038606 218 NKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQ 297 (666)
Q Consensus 218 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 297 (666)
.++|.++++..+...+.. |.. .......+..+..++...+.+.+|++...
T Consensus 282 ~~~~t~cle~ge~vlk~e--p~~----------------------------~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 282 EKHWTECLEAGEKVLKNE--PEE----------------------------TMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred hhhHHHHHHHHHHHHhcC--Ccc----------------------------cceeeeeeheeeecccccCCHHHHHHHHH
Confidence 233333333333333221 110 00011233444555666677777777777
Q ss_pred HHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038606 298 AMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG 354 (666)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 354 (666)
+++... +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 332 evL~~d-----------------~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 332 EVLDID-----------------PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhcC-----------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 766654 4556666666667766667777777777666644
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=3.3e-09 Score=99.76 Aligned_cols=221 Identities=13% Similarity=0.017 Sum_probs=187.0
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (666)
++.|.+.|.+.+|.-+++..++..+. ..+++..|......+++-..|+..+.++++.+ |.|..+...|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhh
Confidence 35678889999999999999996644 88999999999999999999999999999998 7899999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHH-----------HHHHhcCChhHHHHHHHHHHHcCC--CCchHHHHHHHHHHhc
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLL-----------QVYCNSGQFDKALSVFNEIIDHGW--VDEHVFSILLVAFSKW 148 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 148 (666)
-..|.+.++..++..++ +..+. ..+.....+....++|-++....+ .|+++...|+..|.-.
T Consensus 369 q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999886543 11111 112233345677778888777766 7999999999999999
Q ss_pred CChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc-HHHHHHHHHhhhccCChhHHHHH
Q 038606 149 GEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASD-AAMYDVIIGGLCKNKQLEMALQL 227 (666)
Q Consensus 149 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 227 (666)
|++++|+..|+.++... +.|...||.|...++...+.++|+..|.+.++. .|. +..+..|.-.|...|.+++|...
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999986 458889999999999999999999999999987 454 45666778889999999999998
Q ss_pred HHHHHh
Q 038606 228 YSEMKG 233 (666)
Q Consensus 228 ~~~~~~ 233 (666)
|-+++.
T Consensus 521 lL~AL~ 526 (579)
T KOG1125|consen 521 LLEALS 526 (579)
T ss_pred HHHHHH
Confidence 877664
No 101
>PF13041 PPR_2: PPR repeat family
Probab=99.15 E-value=1.3e-10 Score=74.40 Aligned_cols=50 Identities=50% Similarity=0.982 Sum_probs=37.9
Q ss_pred CCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038606 568 PDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCK 617 (666)
Q Consensus 568 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 617 (666)
||..+||+++.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777653
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.13 E-value=4.3e-09 Score=90.51 Aligned_cols=120 Identities=14% Similarity=0.081 Sum_probs=78.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCC--hhH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV-YCNSGQ--FDK 119 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~ 119 (666)
.++.+++...+++.++.+ |.|...|..++..|...|++++|...|+++.+.++. +...+..+..+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHH
Confidence 455666666666666666 566666777777777777777777777777665544 55556665554 345555 366
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 120 ALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 120 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
|.++++++.+.+|.++.++..++..+.+.|++++|+..++++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7777777777666666666666666666777777777776666654
No 103
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=2.2e-10 Score=73.35 Aligned_cols=49 Identities=57% Similarity=1.003 Sum_probs=33.4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038606 497 PDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWC 545 (666)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 545 (666)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666664
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.11 E-value=9.4e-09 Score=93.01 Aligned_cols=187 Identities=11% Similarity=-0.065 Sum_probs=137.2
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN---YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKY- 102 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 102 (666)
+.+++.+..++..+.+.|++++|...|+++.... |.+. .++..++.++.+.|++++|...|+++++..+. ++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCch
Confidence 4467778889999999999999999999998876 3333 47788899999999999999999999987554 332
Q ss_pred --cHHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhh
Q 038606 103 --TLTPLLQVYCNS--------GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKT 172 (666)
Q Consensus 103 --~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 172 (666)
++..+..++.+. |++++|.+.|+.+....|.+...+..+.......+. . ...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~----------~--------~~~ 168 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR----------L--------AGK 168 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH----------H--------HHH
Confidence 455555666554 788999999999998887765554333322111000 0 011
Q ss_pred HHHHHHhhhccCCHHHHHHHHHHHHhCC--CCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 173 FCVLIHGFVKKSRVDKALQLFDKMTKSG--FASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 173 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
...+...+.+.|++++|...++...+.. .+.....+..++.++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1245567888999999999999988753 1223567888999999999999999998888764
No 105
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.09 E-value=1.3e-08 Score=86.41 Aligned_cols=159 Identities=16% Similarity=0.050 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC
Q 038606 70 NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG 149 (666)
Q Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (666)
..+...+...|+-+....+........+ .|......++...++.|++..|+..|.++....|.|...|+.++.+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4555555555555555555555433222 244444455555556666666666666666666556666666666666666
Q ss_pred ChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHH
Q 038606 150 EVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYS 229 (666)
Q Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 229 (666)
+++.|..-|.+..+..+ .+....+.+.-.+.-.|+++.|+.++......+ +.|...-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666666555432 234444555555555566666666666555443 2344555555555555666666665554
Q ss_pred HH
Q 038606 230 EM 231 (666)
Q Consensus 230 ~~ 231 (666)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.08 E-value=7.7e-09 Score=94.33 Aligned_cols=251 Identities=15% Similarity=0.096 Sum_probs=165.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHH
Q 038606 367 DGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAM 446 (666)
Q Consensus 367 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 446 (666)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++.... +|.......+...+...++.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556899999887666 332221123345567788999999877544 3333333 556666655555554445555
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038606 447 EAFRFLTDMVQEGFLP-DIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEM 525 (666)
Q Consensus 447 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 525 (666)
.++.-+++.......+ +..........+...|+++.|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555554443222 2333333345566789999999887643 35667777888999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 038606 526 ITKGLIPSVATYNLLINGWCK----SGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGC 601 (666)
Q Consensus 526 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 601 (666)
.+. ..| .+...+..++.. ..++.+|..+|+++.+..+ +++.+.+.+..++...|++++|.+++++..+.+
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~--~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG--STPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 874 333 444445554432 3369999999999987755 788889999999999999999999999987753
Q ss_pred CCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHHc
Q 038606 602 APNRITFMALITGLCKCDRP-RAALVHFRMMKEK 634 (666)
Q Consensus 602 ~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 634 (666)
+-++.++..++.+....|+. +.+.+.+.++...
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34677888888888888887 6677888888765
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.08 E-value=1.3e-05 Score=75.43 Aligned_cols=177 Identities=9% Similarity=-0.006 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHccCChHHHHHHHH
Q 038606 410 VVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLP-DIVCYSAAIGGLIDIKRVDLALELFR 488 (666)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 488 (666)
.+....+++++.......-..+|..+++...+..-...|..+|.++.+.+..+ ++...++++..++ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45556666666655444444566677777777777888888888888877666 5666777777655 478888888888
Q ss_pred HHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHhcCC-
Q 038606 489 DICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPS--VATYNLLINGWCKSGNIDQAMLCLSRMLEKES- 565 (666)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 565 (666)
.-.+. ...++.--...++.+...++-..+..+|++....++.|+ ..+|..++.--..-|++..+.++-++.....+
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76654 344555556677777788888889999999888866655 35888888888888898888888877766544
Q ss_pred -CCCCHHhHHHHHHHHHHcCChhH
Q 038606 566 -GSPDVITYTTLIDGLCIAGRPDD 588 (666)
Q Consensus 566 -~~~~~~~~~~l~~~~~~~g~~~~ 588 (666)
..+....-..+++-|.-.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 22222233345555555555433
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.05 E-value=3.7e-08 Score=89.92 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhC
Q 038606 321 SPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRL-EESYELLREMEES 388 (666)
Q Consensus 321 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 388 (666)
++++...+.+..+....|++++|.+++.+....+ +.++.+...++.+....|+. +.+.+.+.++...
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 4555556666666666666666666666655443 33445555555555555555 4455555555543
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.04 E-value=8.4e-09 Score=83.84 Aligned_cols=114 Identities=11% Similarity=-0.145 Sum_probs=87.5
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
+|..+..++..+...|++++|...|+.++..+ |.+..+|..++.++.+.|++++|...|+++.+.++. ++..+..+.
T Consensus 23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg 99 (144)
T PRK15359 23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTG 99 (144)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHH
Confidence 34446667778888888888888888888776 677788888888888888888888888888877654 777777788
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAF 145 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (666)
.++...|++++|+..|+.+....|.++..+.....+.
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 8888888888888888888888777776665554443
No 110
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=2.2e-07 Score=86.08 Aligned_cols=212 Identities=11% Similarity=0.017 Sum_probs=161.5
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 34 GFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC-SVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 34 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
..+-..+...++.++|+.+++++++.+ |.+..+|.....++...| +++++...++++.+.+++ +..+|+....++.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 455666777889999999999999987 677788988888888888 689999999999998766 6667776655555
Q ss_pred hcCCh--hHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc---CC--
Q 038606 113 NSGQF--DKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK---SR-- 185 (666)
Q Consensus 113 ~~~~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-- 185 (666)
+.|.. ++++..++++.+.++.+..+|....-++...|+++++++.++++++.++. |..+|+....++.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 66653 67899999999999999999999999999999999999999999998754 667777666555443 22
Q ss_pred --HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhcc----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Q 038606 186 --VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKN----KQLEMALQLYSEMKGSGITPDFEILSKLITSCS 251 (666)
Q Consensus 186 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 251 (666)
.+++++...++.... |.|...|+.+...+... +...+|...+.+....+ ..+...+..++..|+
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 246777776777665 66778888887777663 34466877777766532 234555555555554
No 111
>PLN02789 farnesyltranstransferase
Probab=99.04 E-value=9.5e-08 Score=88.42 Aligned_cols=208 Identities=12% Similarity=0.069 Sum_probs=166.4
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCCh
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVG-LVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSV 82 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (666)
++...++.++|..+...++.-. |-+..+++....++...| ++++++..++.+.+.+ |.+..+|+-...++.+.|..
T Consensus 46 ~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHcCch
Confidence 5666778889999998888744 336677777788888888 6899999999999988 78888998887777777764
Q ss_pred --hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc---CCh----hh
Q 038606 83 --DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW---GEV----DK 153 (666)
Q Consensus 83 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 153 (666)
+++...++++++.++. |..+|+...-++...|+++++++.++++++.++.+..+|+....++.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 6789999999998766 8889998888888899999999999999999999999999888777665 333 46
Q ss_pred HHHHHHHHhhCCCCcchhhHHHHHHhhhcc----CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc
Q 038606 154 ACELIERMDDCNIRLNEKTFCVLIHGFVKK----SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCK 217 (666)
Q Consensus 154 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (666)
+.++..+++..+ +-|...|+.+..++... ++..+|.+.+.+....+ +.+......|+..|..
T Consensus 202 el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 777777888776 34778888888777663 34567888888877654 5567778888888875
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.02 E-value=1.9e-06 Score=95.26 Aligned_cols=381 Identities=11% Similarity=-0.032 Sum_probs=206.8
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.+...+..+...|++.+|...+..+.... .-..............|+++.+..+++.+.......++.........+
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~~---~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~ 419 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDAQ---LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLA 419 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCHH---HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHH
Confidence 34455666677777777666444332110 001112223344556778887777776653221122333334444555
Q ss_pred HhcCChhHHHHHHHHHHHcCCC-----C----chHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcch----hhHHHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWV-----D----EHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNE----KTFCVLIH 178 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~ 178 (666)
...|++++|...+..+...-.. + ......+...+...|++++|...+++........+. ...+.+..
T Consensus 420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 6778899988888876543111 1 112233445667788999999988887763211121 23344555
Q ss_pred hhhccCCHHHHHHHHHHHHhC----CC-CccHHHHHHHHHhhhccCChhHHHHHHHHHHhC----CCCCCHHHHHHHHHh
Q 038606 179 GFVKKSRVDKALQLFDKMTKS----GF-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS----GITPDFEILSKLITS 249 (666)
Q Consensus 179 ~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~~ 249 (666)
.+...|++++|...+++.... +. ......+..+...+...|+++.|...+++.... +. ++..
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~-------- 570 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-EQLP-------- 570 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-cccc--------
Confidence 667789999998888876642 10 111234455667778889999999888877642 10 0000
Q ss_pred hhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHH
Q 038606 250 CSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDI 329 (666)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (666)
.....+..+...+...|++++|...++......... ........+..
T Consensus 571 ---------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~------------~~~~~~~~~~~ 617 (903)
T PRK04841 571 ---------------------MHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY------------QPQQQLQCLAM 617 (903)
T ss_pred ---------------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc------------CchHHHHHHHH
Confidence 000223345566777899999999988776532100 00112334555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH
Q 038606 330 IINTLLKDGKLDLALSLFREMTQIGCMQ-NVFLY-----NNLIDGLCNSNRLEESYELLREMEESGFKPTH---FTLNSM 400 (666)
Q Consensus 330 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 400 (666)
+...+...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+............ ..+..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 6677888899999988888775431111 11111 11123344577888888777665432111111 112345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 401 FRCLCRRQDVVGALNLVRKMRVQ----GHEP-WVKHNTLLIKELCKHGKAMEAFRFLTDMVQ 457 (666)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 457 (666)
..++...|++++|...++++... +... ...+...+..++...|+.++|...+.+..+
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666677777777776665542 1111 112233333444455555555555555444
No 113
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.01 E-value=4.6e-05 Score=76.52 Aligned_cols=223 Identities=10% Similarity=0.020 Sum_probs=154.0
Q ss_pred hhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038606 8 ARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEM 87 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 87 (666)
.+++..|..-+..+++.. |.++.+...-+-.+.+.|+.++|..+++...... +.|..|...+-.+|...|..++|..
T Consensus 22 ~~qfkkal~~~~kllkk~-Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH-PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 367778888887777744 3355555555566778999999999998888766 4678899999999999999999999
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc-CC---------hhhHHHH
Q 038606 88 RLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW-GE---------VDKACEL 157 (666)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A~~~ 157 (666)
+|++..... |+......+..+|.+.+++.+-.++-=++.+.-|.++..+-.+++.+... .. ..-|.+.
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999998864 45667777888888888886655554445455555555444444433322 11 2345666
Q ss_pred HHHHhhCC-CCcchhhHHHHHHhhhccCCHHHHHHHHHH-HHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 158 IERMDDCN-IRLNEKTFCVLIHGFVKKSRVDKALQLFDK-MTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 158 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
++.+.+.+ .--+..-...-...+...|++++|++++.. ..+.-.+.+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 77776654 222233333344556678999999999953 3333323444455566777888899999999998888876
No 114
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.00 E-value=4.9e-05 Score=76.32 Aligned_cols=182 Identities=14% Similarity=0.079 Sum_probs=114.3
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 038606 42 SVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKAL 121 (666)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 121 (666)
..+++..|+....++++.. |....+...=+-.+.+.|..++|..+++.....+.. |..++..+-.+|...|++++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4578889999999999876 333333332334567899999999888877665444 7788888889999999999999
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC----------CHHHHHH
Q 038606 122 SVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS----------RVDKALQ 191 (666)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~A~~ 191 (666)
.+|+++....|. ......+..+|.+.+++.+-.+.--++-+. .+-+...+=+++..+...- -..-|.+
T Consensus 98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999999998876 667777788888888776655444444432 2223444333444332211 1234555
Q ss_pred HHHHHHhCCCCc-cHHHHHHHHHhhhccCChhHHHHHH
Q 038606 192 LFDKMTKSGFAS-DAAMYDVIIGGLCKNKQLEMALQLY 228 (666)
Q Consensus 192 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 228 (666)
.++.+.+.+-+- +..-.......+...|++++|.+++
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 666665543111 1111111223334566677777776
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.98 E-value=3.1e-08 Score=101.17 Aligned_cols=148 Identities=9% Similarity=0.047 Sum_probs=113.5
Q ss_pred hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH
Q 038606 25 RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL 104 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 104 (666)
..+..++.+..|++...+.|++++|..+++.+++.. |-+...+..++..+.+.+++++|...++++++.++. +....
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~ 157 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREI 157 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHH
Confidence 344467888888888888888888888888888876 566777888888888888888888888888877655 66677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHH
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVL 176 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 176 (666)
..+..++.+.|++++|..+|+++...+|.++.++..++.++-..|+.++|...|++..+.. .+....|+.+
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 7777778888888888888888888777777888888888888888888888888887653 3334444433
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.97 E-value=7e-08 Score=87.32 Aligned_cols=183 Identities=10% Similarity=-0.037 Sum_probs=132.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch---
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK---YTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEH--- 136 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 136 (666)
+.....+..++..+...|++++|...|+++.+..+. ++ .++..+..++...|++++|+..++++.+..|.++.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456778899999999999999999999999887543 22 46677888999999999999999999998886665
Q ss_pred HHHHHHHHHHhc--------CChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHH
Q 038606 137 VFSILLVAFSKW--------GEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMY 208 (666)
Q Consensus 137 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 208 (666)
++..++.++... |+.++|.+.|+++....+. +...+..+..... .. .... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHH
Confidence 566677777665 7889999999999876432 2222222221100 00 0000 112
Q ss_pred HHHHHhhhccCChhHHHHHHHHHHhCCC-CC-CHHHHHHHHHhhhccCcHHHHHHHHHh
Q 038606 209 DVIIGGLCKNKQLEMALQLYSEMKGSGI-TP-DFEILSKLITSCSDEGELTLLVKEIWE 265 (666)
Q Consensus 209 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~ 265 (666)
..+...+.+.|++++|...+++...... .| ....+..+..++...|+.+.+...+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2566778999999999999999987532 12 356788888999999999877665443
No 117
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=6.6e-06 Score=91.10 Aligned_cols=334 Identities=15% Similarity=0.040 Sum_probs=183.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC------CCCH--HHHHHHHHH
Q 038606 332 NTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGF------KPTH--FTLNSMFRC 403 (666)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~--~~~~~l~~~ 403 (666)
......|+++.+..++..+.......++.........+...|+++++...+......-- .+.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777666665542211112222223334445567788888887776643210 0111 112223344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHH
Q 038606 404 LCRRQDVVGALNLVRKMRVQGHEPWV----KHNTLLIKELCKHGKAMEAFRFLTDMVQEGF---LP--DIVCYSAAIGGL 474 (666)
Q Consensus 404 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 474 (666)
+...|+++.|...++.........+. .....+...+...|++++|...+++...... .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 56778888888888877653111111 2234455566678888888888777654311 11 112344455666
Q ss_pred HccCChHHHHHHHHHHHhc----CCC--c-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHH
Q 038606 475 IDIKRVDLALELFRDICAH----GCC--P-DVVAYNIIISGLCKAQRVAEAEDLFNEMITK--GLIP--SVATYNLLING 543 (666)
Q Consensus 475 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p--~~~~~~~l~~~ 543 (666)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 7788888888877765531 211 1 1223344455566678888888887776543 1111 12234445556
Q ss_pred HHccCChhHHHHHHHHHHhcCCCCCCHHhH-----HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 038606 544 WCKSGNIDQAMLCLSRMLEKESGSPDVITY-----TTLIDGLCIAGRPDDAIMLWNEMEEKGCAPN---RITFMALITGL 615 (666)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~ 615 (666)
+...|++++|...+...............+ ...+..+...|+.+.|.+.+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 777888888888887775432101111111 1112334456778888777766543211111 11134555667
Q ss_pred HccCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhhHHHHHhh
Q 038606 616 CKCDRPRAALVHFRMMKEK----GMKPD-MFVFVALISAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 616 ~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (666)
...|++++|...++++... |...+ ..++..++.++.+.|+.++|...+.+
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7788888888888877652 32222 35666777788888888888777653
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.5e-07 Score=80.04 Aligned_cols=186 Identities=10% Similarity=-0.000 Sum_probs=152.0
Q ss_pred hhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhH
Q 038606 5 LSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDL 84 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (666)
+.+.+.-..+..+.+...+. |-++++ ..+.+.+...|+-+............. +.+.......+....+.|++..
T Consensus 44 ~~~~q~~~a~~al~~~~~~~--p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~ 118 (257)
T COG5010 44 LAMRQTQGAAAALGAAVLRN--PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGE 118 (257)
T ss_pred HHHHhhhHHHHHHHHHHhcC--cchHHH-HHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHH
Confidence 33434444444445554443 234556 788899999999999998888877665 5677777779999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 85 VEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 85 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
|...+.++....++ |...|+.+.-+|.+.|+++.|..-|.+..+..+.++.+.+-++..+.-.|+.+.|..++......
T Consensus 119 A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 119 AVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHHhccCCC-ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999999987544 88999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCcchhhHHHHHHhhhccCCHHHHHHHHHHHH
Q 038606 165 NIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMT 197 (666)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 197 (666)
. .-|..+-..+.......|++++|..+-..-.
T Consensus 198 ~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 198 P-AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred C-CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 4 3366777778888889999999999887655
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.93 E-value=5.1e-05 Score=71.68 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc---CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 038606 445 AMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDI---KRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDL 521 (666)
Q Consensus 445 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 521 (666)
.+++..+++.....-..-+..+|..+...--.. .+.+.....++++...-...-..+|..+++.--+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 345555565554432222333333333221111 23566666777666532222344677777777788888899999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 038606 522 FNEMITKGLIP-SVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKG 600 (666)
Q Consensus 522 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 600 (666)
|.++.+.+..+ +..+..+++.-|+ .++..-|.++|+--+.+.+ .++..-...++.+...++-..+..+|++....+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999887666 5667777776554 5788889999988877765 333444567777788888899999999988876
Q ss_pred CCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 601 CAPN--RITFMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 601 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
++|+ ..+|..++.-=..-|+.+.++++-+++..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6665 57888888877788999988888777664
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=1.5e-07 Score=81.04 Aligned_cols=154 Identities=9% Similarity=0.114 Sum_probs=96.5
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 038606 37 IRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQ 116 (666)
Q Consensus 37 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (666)
+-.|...|++.......+.... +.. .+...++.+++...+++.++.++. |...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~~---------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PLH---------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----ccc---------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCC
Confidence 3556677777665444322221 111 111255566666777777666554 66677777777777777
Q ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHH-HhcCC--hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHH
Q 038606 117 FDKALSVFNEIIDHGWVDEHVFSILLVAF-SKWGE--VDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLF 193 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 193 (666)
+++|...|+++....|.++.++..++.++ ...|+ .++|.+++++..+.++ .+..++..+...+.+.|++++|+..|
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777777777777777777653 55555 4777777777777653 25566666666677777777777777
Q ss_pred HHHHhCCCCccHH
Q 038606 194 DKMTKSGFASDAA 206 (666)
Q Consensus 194 ~~~~~~~~~~~~~ 206 (666)
+++.+.. +|+..
T Consensus 168 ~~aL~l~-~~~~~ 179 (198)
T PRK10370 168 QKVLDLN-SPRVN 179 (198)
T ss_pred HHHHhhC-CCCcc
Confidence 7776654 34433
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=7.2e-07 Score=75.28 Aligned_cols=188 Identities=13% Similarity=0.066 Sum_probs=127.0
Q ss_pred hhhchHHHHHHHHhhhhcC--CCcch---HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChh
Q 038606 9 RRIAPLRVLAQDVVKSRCF--MSPGA---LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVD 83 (666)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (666)
.+.+++.+++.+++..... .-++. |..++-+....|+.+.|...++++.... |.+...-..-+-.+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 3556666777666655322 22333 3445566666778888888888877765 445444444444456677888
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
+|.++|+.+++.++. |..++..=+.+....|+.-+|++.+....+.-+.|..+|..+...|...|++++|.=.+++++-
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 888888888877644 6666666565666677777888888888777777888888888888888888888888888776
Q ss_pred CCCCcchhhHHHHHHhhhccC---CHHHHHHHHHHHHhCC
Q 038606 164 CNIRLNEKTFCVLIHGFVKKS---RVDKALQLFDKMTKSG 200 (666)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~ 200 (666)
.. |.++..+..+.+.+.-.| +.+.|.+.|++..+.+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 64 346666666666554444 4567777777777654
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.86 E-value=7.5e-07 Score=92.00 Aligned_cols=241 Identities=14% Similarity=0.147 Sum_probs=165.1
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
.|....++..|+..+...+++++|.++.+..++.. |.....|..++-.+.+.++.+.+..+ .
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~-------------- 88 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N-------------- 88 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h--------------
Confidence 44457778889999999999999999999888876 55666777777788888886555544 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCC
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSR 185 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 185 (666)
++.......++.....+...+.. .+.+..++..++.+|.+.|+.++|..+++++++.+ +-|..+.|.+...|... +
T Consensus 89 -~l~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 89 -LIDSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 33333334444333333333333 33455678888888888888888888888888887 44778888888888877 8
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHhhhccCcHHHHHHHHH
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF-EILSKLITSCSDEGELTLLVKEIW 264 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~ 264 (666)
+++|++++.+.... +...+++..+.+++.++.... |+. ..+..+++. +.
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~k-------------i~ 214 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERK-------------VL 214 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHH-------------HH
Confidence 88888888876643 555667888888888887753 322 122222221 12
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 038606 265 EDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLL 335 (666)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 335 (666)
...+.......+..+...|-...+++++..+++.+++.. +.|..+..-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-----------------~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-----------------NKNNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-----------------CcchhhHHHHHHHHH
Confidence 222222223556667778888999999999999999987 667777777777665
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.84 E-value=3.7e-07 Score=93.48 Aligned_cols=146 Identities=8% Similarity=-0.001 Sum_probs=105.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
+.+...+..|+.+..+.|.+++|..+++.+.+..+. +......+...+.+.+++++|+..++++....|.+......++
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 456777777777778888888888888888776444 5556666777777778888888888888888777777777888
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHH
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVI 211 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 211 (666)
.++.+.|++++|..+|+++...+ +.+..++..+...+.+.|+.++|...|++..+.. .+....|+.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 88888888888888888877643 3346677777777777788888888888776543 2344444443
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=1.5e-07 Score=76.53 Aligned_cols=110 Identities=9% Similarity=-0.036 Sum_probs=87.0
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038606 50 NMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIID 129 (666)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 129 (666)
..+|+++++.+ |+. +..++..+...|++++|...|+.++..++. +...+..+..++...|++++|+..|+++..
T Consensus 13 ~~~~~~al~~~---p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVD---PET--VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcC---HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45777777654 332 556777888888888888888888877554 777788888888888888888888888888
Q ss_pred cCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 130 HGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 130 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
.+|.++..+..++.++...|+.++|+..|+..+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888888888888888888887764
No 125
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.83 E-value=1.8e-06 Score=90.06 Aligned_cols=223 Identities=11% Similarity=0.045 Sum_probs=178.5
Q ss_pred chHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHH
Q 038606 12 APLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMR 88 (666)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 88 (666)
..++++...++ +.|.|.-.|-..+......++.++|++++++++..=.+... .-.|..+++....-|.-+...++
T Consensus 1442 esaeDferlvr--ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1442 ESAEDFERLVR--SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred cCHHHHHHHHh--cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 34555444443 44567778888999999999999999999999875311111 23688888888888888999999
Q ss_pred HHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 038606 89 LKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL 168 (666)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (666)
|+++.+. -..-.++..|...|.+.+.+++|.++++.|.+.-.....+|...+..+.++.+-+.|..++.++++.-++-
T Consensus 1520 FeRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1520 FERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence 9999874 21335678899999999999999999999988755677899999999999999999999999998863321
Q ss_pred -chhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCC
Q 038606 169 -NEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPD 239 (666)
Q Consensus 169 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 239 (666)
........+..-.+.|+.++++.+|+...... |.-...|+..+..-.+.|+.+.++.+|+++...++.|-
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 22334445556668999999999999988764 45677899999999999999999999999999887764
No 126
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=2.2e-06 Score=83.57 Aligned_cols=221 Identities=13% Similarity=0.032 Sum_probs=177.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 038606 391 KPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAA 470 (666)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 470 (666)
+|--..-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..+. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333444566778888999999999998865 3566788999999999999999888885 7899999999
Q ss_pred HHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 038606 471 IGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNI 550 (666)
Q Consensus 471 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (666)
.+......-++.|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88888888888998888765432 11112222334789999999999887752 23566888888888899999
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 038606 551 DQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRM 630 (666)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 630 (666)
..|.+.|.......| -+...||++..+|.+.|+..+|...+++..+.+ .-+...|...+....+.|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL~P--d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEP--DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhcCC--CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 999999999988765 566789999999999999999999999999876 55677888888888899999999999999
Q ss_pred HHH
Q 038606 631 MKE 633 (666)
Q Consensus 631 ~~~ 633 (666)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 876
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=5e-06 Score=86.95 Aligned_cols=227 Identities=10% Similarity=0.028 Sum_probs=148.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 038606 392 PTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQ-GHE---PWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCY 467 (666)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 467 (666)
-+...|-..+......++.+.|.++.++++.. ++. --...|.++++.....|.-+...++|+++.+. ......|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 34456667777777777777777777776643 111 11234555666656666667777777777765 2234556
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 038606 468 SAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPS---VATYNLLINGW 544 (666)
Q Consensus 468 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~ 544 (666)
..|...|.+.+++++|.++++.|.+. +......|...+..+.+..+-++|..++.+.++. -|. .....-.+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 67777777888888888888887765 3356667777778887877778888888877765 232 22333444555
Q ss_pred HccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChh
Q 038606 545 CKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPN--RITFMALITGLCKCDRPR 622 (666)
Q Consensus 545 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 622 (666)
.+.|+.+.+..+|+......|. ....|+..++.-.++|+.+.+..+|++....++.|. -..|..++.-=-..|+-.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 6778888888888888777663 334677888888888888888888888887776664 233444444333445544
Q ss_pred HHH
Q 038606 623 AAL 625 (666)
Q Consensus 623 ~A~ 625 (666)
.+.
T Consensus 1689 ~vE 1691 (1710)
T KOG1070|consen 1689 NVE 1691 (1710)
T ss_pred hHH
Confidence 433
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.75 E-value=2.4e-07 Score=75.43 Aligned_cols=109 Identities=9% Similarity=-0.005 Sum_probs=55.0
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 53 FDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
|+++++.+ |.+......++..+...|++++|...|+.+...++. +...+..+...+...|++++|...++++...+|
T Consensus 6 ~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 6 LKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444433 333444444555555555555555555555444322 444444555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 133 VDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.++..+..++.++...|++++|.+.|+...+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555544
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=9e-07 Score=74.71 Aligned_cols=155 Identities=17% Similarity=0.093 Sum_probs=136.9
Q ss_pred HhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038606 7 RARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVE 86 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (666)
-+++..-|..+++++.++- |.|+.+-..-+-.+-..|++++|.++|+.+++.+ |.|..++..-+.+....|.--+|+
T Consensus 64 d~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aI 140 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAI 140 (289)
T ss_pred HhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHH
Confidence 3577778888888888876 7799999888888999999999999999999998 788888888888888899988999
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC---ChhhHHHHHHHHhh
Q 038606 87 MRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG---EVDKACELIERMDD 163 (666)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 163 (666)
+.+...++. +..|...|.-+...|...|++++|.-.++++.-.+|.++-.+..++..+.-.| +++-|.++|.+.++
T Consensus 141 k~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 141 KELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999998886 66699999999999999999999999999999999999998888888777666 57778899999998
Q ss_pred CC
Q 038606 164 CN 165 (666)
Q Consensus 164 ~~ 165 (666)
..
T Consensus 220 l~ 221 (289)
T KOG3060|consen 220 LN 221 (289)
T ss_pred hC
Confidence 74
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.75 E-value=6.2e-06 Score=85.47 Aligned_cols=150 Identities=10% Similarity=0.035 Sum_probs=98.3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
|.+...+..|+..+...+++++|.++.+...+..+. ....|..++..+.+.+++..+..+ . ++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~--------------~l 90 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--N--------------LI 90 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--h--------------hh
Confidence 556677777888887888888888888877765433 334444444466666665555444 2 22
Q ss_pred HHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChh
Q 038606 143 VAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLE 222 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 222 (666)
.......++....-+...+.+. .-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.|.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2223333343333333344442 2344567778888888888888888888888877 67788888888888888 888
Q ss_pred HHHHHHHHHHh
Q 038606 223 MALQLYSEMKG 233 (666)
Q Consensus 223 ~a~~~~~~~~~ 233 (666)
+|.+++.+...
T Consensus 167 KA~~m~~KAV~ 177 (906)
T PRK14720 167 KAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHH
Confidence 88888877765
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.74 E-value=1.1e-06 Score=81.71 Aligned_cols=201 Identities=15% Similarity=0.042 Sum_probs=134.8
Q ss_pred hhchHHHHHHHHhhhhcCCCcchH--HHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038606 10 RIAPLRVLAQDVVKSRCFMSPGAL--GFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEM 87 (666)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 87 (666)
|...++...+.........+++.. ...++.......-..+..++....+ +.-...+......+...|++++|++
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK----RGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC----ccchHHHHHHHHHHHHhcccchHHH
Confidence 344444444444444333344443 3344444443333344444443333 2345566677777778888888888
Q ss_pred HHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 038606 88 RLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIR 167 (666)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (666)
.++.+++.-+ .|+..+......+...|+..+|.+.++++....|..+..+..++.++.+.|++.+|+.++......+ +
T Consensus 328 ~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p 405 (484)
T COG4783 328 LLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-P 405 (484)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-C
Confidence 8888877643 3666666777888888888888888888888888777788888888888888888888888887765 4
Q ss_pred cchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 168 LNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
.|+..|..|..+|...|+..+|.....+ .|...|+++.|...+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 5778888888888888877776654443 334467777777777766654
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=4.6e-07 Score=73.71 Aligned_cols=115 Identities=13% Similarity=-0.030 Sum_probs=98.5
Q ss_pred HHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038606 18 AQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGW 97 (666)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 97 (666)
+++++...+. +......++..+...|++++|.+.|+.+...+ |.+...+..++.++.+.|++++|...+++..+.++
T Consensus 6 ~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 6 LKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4455554333 56778889999999999999999999999877 67889999999999999999999999999988764
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038606 98 GYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEH 136 (666)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 136 (666)
. +...+..+...|...|++++|...|+.+.+.+|.+..
T Consensus 83 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 D-DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 6777888889999999999999999999998876544
No 133
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=6.3e-06 Score=80.55 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=189.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 038606 318 GTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTL 397 (666)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 397 (666)
..++|-...-..+...+...|-...|..+|+++.. |...+.+|...|+..+|..+..+..+. +|++..|
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~ly 460 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLY 460 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhH
Confidence 34566666777888999999999999999988654 667888899999999999999888874 7899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc
Q 038606 398 NSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDI 477 (666)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 477 (666)
..+........-++.|.++.+..-.. +-..+.....+.+++.++.+.++.-.+.+ +....+|-....+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHH
Confidence 88888877777788888888765432 12222233345789999999999888775 45677888888888899
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 038606 478 KRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCL 557 (666)
Q Consensus 478 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 557 (666)
++++.|.+.|...... -|.+...||.+-.+|.+.++..+|...+.+..+.+ .-+..+|...+-...+-|.+++|.+.+
T Consensus 533 ek~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999998875 35677899999999999999999999999999876 335567767777778999999999999
Q ss_pred HHHHhcCCCCCCHHhHHHHHHHHH
Q 038606 558 SRMLEKESGSPDVITYTTLIDGLC 581 (666)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~ 581 (666)
.++........|......++....
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHHHH
Confidence 998765433334444444444433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=7.3e-06 Score=76.49 Aligned_cols=189 Identities=11% Similarity=0.035 Sum_probs=135.6
Q ss_pred hccCChHHHHHHHHHHHHcCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhH
Q 038606 41 GSVGLVEEANMLFDQVKREGL-CVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDK 119 (666)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (666)
.-..+..++...-+++...+. ..|+...+...+........-..+..++-+..+ .. -...+......+...|++++
T Consensus 248 lp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~-~~aa~YG~A~~~~~~~~~d~ 324 (484)
T COG4783 248 LPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK--RG-GLAAQYGRALQTYLAGQYDE 324 (484)
T ss_pred CchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC--cc-chHHHHHHHHHHHHhcccch
Confidence 334455666666666554431 134445555555544444433334344333333 11 22334444445567899999
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC
Q 038606 120 ALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS 199 (666)
Q Consensus 120 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (666)
|+..+..+....|.|+..+......+.+.|+.++|.+.++++....+. .......+..+|.+.|++.+|+.+++.....
T Consensus 325 A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 325 ALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 999999999999989898999999999999999999999999987432 3666777888999999999999999998876
Q ss_pred CCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 200 GFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
. +.|+..|..|.++|...|+..++.....+....
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 5 778889999999999999999999888887664
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.8e-05 Score=66.56 Aligned_cols=258 Identities=17% Similarity=0.101 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 038606 357 QNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLI 436 (666)
Q Consensus 357 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 436 (666)
|+...|+ ++-+.-.|++..++..-...... +-+...-..+.++|...|.+..... .+.... .+.......+.
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a 79 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLA 79 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHH
Confidence 4344444 34455578888877766555433 2345555567788888887654332 222211 33333334344
Q ss_pred HHHHhcCCHHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCH
Q 038606 437 KELCKHGKAMEAF-RFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRV 515 (666)
Q Consensus 437 ~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (666)
.....-++.+..+ ++.+.+.......+......-...|...+++++|++...... ..+....+ ...+.+..+.
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~ 153 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRF 153 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHH
Confidence 4444444444433 444455444333343444455567889999999999887632 12233333 3445677889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHH
Q 038606 516 AEAEDLFNEMITKGLIPSVATYNLLINGWCK----SGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIM 591 (666)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 591 (666)
+-|.+.+++|.+- .+..|.+.|..+|.+ .+.+.+|.-+|+++.++.+ |+..+.+....++...|++++|..
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~--~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTP--PTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccC--CChHHHccHHHHHHHhcCHHHHHH
Confidence 9999999999874 366788888887764 3468899999999988776 888899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChhH-HHHHHHHHHHc
Q 038606 592 LWNEMEEKGCAPNRITFMALITGLCKCDRPRA-ALVHFRMMKEK 634 (666)
Q Consensus 592 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 634 (666)
++++..... ..++.++..++.+-...|...+ ..+.+.++...
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999998864 4467888777766666676644 45666666644
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00011 Score=62.97 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHc-
Q 038606 398 NSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLID- 476 (666)
Q Consensus 398 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 476 (666)
..-...|+..+++++|.+...... +......-...+.+..+.+.|.+.+++|.+- .+..+.+.+..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL 182 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence 333445555666666655554411 1222222233344445555555555555543 133444444444332
Q ss_pred ---cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 038606 477 ---IKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITK 528 (666)
Q Consensus 477 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 528 (666)
.+++..|.-+|+++.+. .+|++.+.+....++...|++++|..+++.....
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 23344555555555442 2444445555544555555555555555555444
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.56 E-value=2.6e-06 Score=69.82 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=80.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--cccHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD--KYTLTP 106 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ 106 (666)
.|..++..+. .+++..+...++.+...+ |.+ ..+...+...+...|++++|...|+.+....+.++ ......
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 3444444443 677777777777777765 334 23444566777777888888888888777653322 224445
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHH
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERM 161 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (666)
+...+...|++++|+..++.+.. .+..+..+...+.++.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66677777788877777766332 2234556666777777777777777777654
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=3.8e-06 Score=66.61 Aligned_cols=107 Identities=12% Similarity=-0.097 Sum_probs=76.7
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcccH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY--DKYTL 104 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 104 (666)
++++..++..+.+.|++++|.+.|..+.+.. |.+ ...+..++.++.+.|+++.|...|+.+....+.. ...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 3566777788888888888888888887765 222 3466777888888888888888888887754332 23456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHH
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVF 138 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 138 (666)
..+..++.+.|++++|...++++....|.++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 6677777788888888888888887776554433
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=1.9e-07 Score=53.24 Aligned_cols=32 Identities=34% Similarity=0.780 Sum_probs=22.5
Q ss_pred CCCccHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 200 GFASDAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 200 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55677777777777777777777777777666
No 140
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.45 E-value=0.0012 Score=60.19 Aligned_cols=296 Identities=16% Similarity=0.042 Sum_probs=157.7
Q ss_pred HHHHHHHHhc--cCChHHHHHHHHHHHHcCCCCCChhhHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHH
Q 038606 33 LGFLIRCLGS--VGLVEEANMLFDQVKREGLCVPNNYSYNCLLE--ALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLL 108 (666)
Q Consensus 33 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 108 (666)
|..|-+.+.. .|+-..|.++-.+..+.- ..|.+....++. +-.-.|+++.|++-|+.|.+. ++.-..-+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHH
Confidence 4444444433 467777777766655332 345555444543 344667888888888888752 111111122233
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcchhhH--HHHHHhh---hc
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN-IRLNEKTF--CVLIHGF---VK 182 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~ 182 (666)
-...+.|..+.|++.-+.....-|.-++++...+...+..|+++.|+++++.-.... +.++..-- ..|+.+- .-
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 233356777888877777777777777777777888888888888888776655432 12222211 1122111 11
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHH-HHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHH
Q 038606 183 KSRVDKALQLFDKMTKSGFASDAA-MYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVK 261 (666)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 261 (666)
..+...|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+....|+.
T Consensus 242 dadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--------------------- 298 (531)
T COG3898 242 DADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--------------------- 298 (531)
T ss_pred cCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH---------------------
Confidence 22445555554444443 34433 2223355667777777777777777766555543
Q ss_pred HHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChH
Q 038606 262 EIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLD 341 (666)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 341 (666)
...|.....-+.+++-+++..+... .-+.+..+...+..+....|++.
T Consensus 299 ------------------a~lY~~ar~gdta~dRlkRa~~L~s--------------lk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 299 ------------------ALLYVRARSGDTALDRLKRAKKLES--------------LKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred ------------------HHHHHHhcCCCcHHHHHHHHHHHHh--------------cCccchHHHHHHHHHHHhccchH
Confidence 1122222222223333333222110 01445555566666666667776
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhC
Q 038606 342 LALSLFREMTQIGCMQNVFLYNNLIDGLCN-SNRLEESYELLREMEES 388 (666)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 388 (666)
.|..--+..... .|....|-.|.+.-.. .|+-.++...+.+..+.
T Consensus 347 ~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 347 AARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 666655555443 2555555555554433 36666666666666554
No 141
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.40 E-value=6.7e-05 Score=60.33 Aligned_cols=152 Identities=12% Similarity=-0.012 Sum_probs=109.0
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCCh
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQF 117 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (666)
.+..+.=|++...+-...-.+. .|+......|..++.+.|++.+|...|++...--+..|+..+..+.++....+++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 64 MALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH
Confidence 3334444444444444333333 4777888888999999999999999999988765666788888888888888999
Q ss_pred hHHHHHHHHHHHcCC--CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHH
Q 038606 118 DKALSVFNEIIDHGW--VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFD 194 (666)
Q Consensus 118 ~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 194 (666)
..|...++++.+.+| ..++....+.+.+...|.+.+|+..|+.....- |+...-......+.++|+.++|..-+.
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 999999998887766 456677778888888888888888888888764 344333334445667776666554333
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=1.3e-05 Score=65.64 Aligned_cols=117 Identities=15% Similarity=0.066 Sum_probs=66.9
Q ss_pred hcCChhHHHHHHHHHHHcCCCCc---hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcc--hhhHHHHHHhhhccCCHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDE---HVFSILLVAFSKWGEVDKACELIERMDDCNIRLN--EKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 187 (666)
..++...+...++.+.+..+..+ .+...++..+...|++++|...|+.+......++ ......+..++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 35666666666666666655442 2334455566666666666666666666542221 123334556666677777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
+|+..++..... ......+......|.+.|++++|...|+..
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777776554332 233344555666677777777777766653
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.38 E-value=7.5e-06 Score=78.13 Aligned_cols=110 Identities=9% Similarity=-0.141 Sum_probs=93.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
+...+..+...|++++|+.+|+++++.+ |.+...|..++.+|.+.|++++|...++++++.++. +...+..+..+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHH
Confidence 3445677888899999999999999987 678889999999999999999999999999987654 6778888889999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAF 145 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (666)
..|++++|+..|+++...+|.++.....+..+.
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999888877766665543
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.36 E-value=8.3e-06 Score=64.85 Aligned_cols=95 Identities=11% Similarity=-0.085 Sum_probs=55.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
+..++-.+...|++++|.++|+.+...+ |.+..-|..|+-++-..|++++|+..|..+...++. |+..+..+..++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3445555555666666666666666655 455556666666666666666666666666555543 5555555556666
Q ss_pred hcCChhHHHHHHHHHHHc
Q 038606 113 NSGQFDKALSVFNEIIDH 130 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~ 130 (666)
..|+.+.|++.|+.++..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666655543
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00052 Score=62.91 Aligned_cols=292 Identities=12% Similarity=-0.014 Sum_probs=184.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNS 114 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (666)
.....+.++.+|.+|+..+..+++.. |.+...|..-+..+..-|++++|.--.+..++.... .+.......+++...
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 34556677778888888888888876 566777777788888888888888777777665433 334555556666666
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcchhhHHHH-HHhhhccCCHHHHHHH
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI-RLNEKTFCVL-IHGFVKKSRVDKALQL 192 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~A~~~ 192 (666)
++..+|.+.++. . .++ ....|+..++....... +|.-.++..+ ...+.-.|++++|...
T Consensus 131 ~~~i~A~~~~~~---~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 131 SDLIEAEEKLKS---K-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHHhhh---h-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 666666666551 1 011 12223333333333322 1222333333 2345678888888888
Q ss_pred HHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCc
Q 038606 193 FDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTM 272 (666)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (666)
--.+++.. ..+......-..++.-.++.+.+..-|++.+.. .|+.......-..+-.
T Consensus 192 a~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~-------------------- 248 (486)
T KOG0550|consen 192 AIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKK-------------------- 248 (486)
T ss_pred HHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHH--------------------
Confidence 77777653 233333333334445678888999999888874 4554332221111100
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 273 TLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
-..+..-.+-..+.|.+..|.+.|...+..+|. ++.++...|.....+..+.|+..+|+.--+...+
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~-------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPS-------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc-------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 023334445577899999999999999887743 3467777888888888999999999988888877
Q ss_pred cCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 038606 353 IGCMQNVFL---YNNLIDGLCNSNRLEESYELLREMEES 388 (666)
Q Consensus 353 ~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 388 (666)
. |... +..-..++...++|++|.+-|+...+.
T Consensus 316 i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 316 I----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred c----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3332 222334556678889999888887665
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.35 E-value=0.00015 Score=64.78 Aligned_cols=184 Identities=10% Similarity=0.030 Sum_probs=107.7
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYS---YNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
++..+...+..+...|++++|.+.|+.+.... |.+..+ ...++.++.+.+++++|...|++.++..|.....-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 45556667777777788888888888887766 333333 2556677788888888888888887775553333333
Q ss_pred HHHHHHHh--c---------------CC---hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 106 PLLQVYCN--S---------------GQ---FDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 106 ~l~~~~~~--~---------------~~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
..+.+.+. . .+ ..+|...|+.+.+.-|.++. ..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~y--------------a~~A~~rl~~l~~~- 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQY--------------TTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChh--------------HHHHHHHHHHHHHH-
Confidence 33332221 1 11 23455666666666553322 22222222222111
Q ss_pred CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC--CCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 166 IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS--GFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
.-... ..+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|..+...+.
T Consensus 174 --la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00011 13556677888888888888888764 222334456677888888888888888776654
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=7.9e-06 Score=77.33 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=109.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.-..+++.+...++++.|..+|+++.+.+ |+ ....+++.+...++-.+|.+++.+.++..+. +...+..-...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33457888888999999999999999865 33 5556888888889999999999999986544 677777777888
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.+.++++.|+++.+++....|.+-.+|..|+.+|...|+++.|+..++.+.-.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999999999999988899999999999999999999999887643
No 148
>PF12854 PPR_1: PPR repeat
Probab=98.33 E-value=9.8e-07 Score=50.29 Aligned_cols=32 Identities=41% Similarity=0.803 Sum_probs=17.0
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 038606 600 GCAPNRITFMALITGLCKCDRPRAALVHFRMM 631 (666)
Q Consensus 600 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 631 (666)
|+.||..+|+.+|.+|++.|++++|.+++++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555443
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=8.2e-06 Score=64.88 Aligned_cols=98 Identities=6% Similarity=-0.111 Sum_probs=67.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAF 145 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (666)
......+...+...|++++|..+|+.+...++. +..-|..|..++-..|++++|+..|..+...+|.++..+..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344555666666777777777777777665544 5566666777777777777777777777777777777777777777
Q ss_pred HhcCChhhHHHHHHHHhhC
Q 038606 146 SKWGEVDKACELIERMDDC 164 (666)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~ 164 (666)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777766654
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.31 E-value=7.9e-06 Score=61.95 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=62.6
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
++..++..+...|++++|...|+.+.+.. |.+...+..++.++...|++++|.+.|+...+..+. +..++..+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHH
Confidence 35556666777777777777777776655 445566666677777777777777777776665433 344555666666
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 038606 112 CNSGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~ 131 (666)
...|+++.|...+..+....
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 79 YKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHhHHHHHHHHHHHHccC
Confidence 66667777766666655543
No 151
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.5e-05 Score=67.96 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=51.1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---CChhHHHHHHHHHHHcCCCCchHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNS---GQFDKALSVFNEIIDHGWVDEHVFS 139 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~ 139 (666)
|.|.+.|..|+..|...|+++.|...|.+..+..++ ++..+..+..++..+ ....++..+|+++...++.+..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 445555555555555555555555555555554322 444444444433322 1223555555555555555555555
Q ss_pred HHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 140 ILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.++..+...|++.+|...++.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555555555555555555555554
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=2.2e-05 Score=74.42 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=112.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
+......|+..+...++++.|.++|+++.+.. +.....+++.+...++-.+|++++.+.....|.+...+...+..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44556667788888999999999999998864 33455678888888999999999999999998888888888999
Q ss_pred HHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC
Q 038606 145 FSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS 199 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (666)
+.+.++++.|.++.+++.... +.+..+|..|..+|.+.|+++.|+-.++.++-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999974 345669999999999999999999999988754
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=1e-05 Score=70.72 Aligned_cols=132 Identities=13% Similarity=0.094 Sum_probs=99.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChh
Q 038606 73 LEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVD 152 (666)
Q Consensus 73 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (666)
++-+.+.++|++|+..|.++++..+. |++.|..-..+|.+.|.++.|++-.+..+..+|....+|..|+.+|...|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 44577889999999999999987655 78888888889999999999999999999988877888999999999999999
Q ss_pred hHHHHHHHHhhCCCCcchhhHHHHHHhh-hccCCHH---HHHHHHHHHHhCCCCccHHH
Q 038606 153 KACELIERMDDCNIRLNEKTFCVLIHGF-VKKSRVD---KALQLFDKMTKSGFASDAAM 207 (666)
Q Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~A~~~~~~~~~~~~~~~~~~ 207 (666)
+|++.|.+.++.+ |+-.+|-.=+... .+.++.. .+...++-....|..||...
T Consensus 167 ~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s 223 (304)
T KOG0553|consen 167 EAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS 223 (304)
T ss_pred HHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh
Confidence 9999999988864 4555555444432 2333333 55556666555665466553
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=3.7e-05 Score=60.86 Aligned_cols=99 Identities=11% Similarity=0.029 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---chHHHHH
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY--DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD---EHVFSIL 141 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l 141 (666)
.++..++..+.+.|++++|.+.|+.+.+..+.. ....+..+..++.+.|+++.|...|+.+....|.+ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 356667777777788888888887777654321 12345556777777777777888777777665543 4556667
Q ss_pred HHHHHhcCChhhHHHHHHHHhhCC
Q 038606 142 LVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
+.++.+.|+.++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 777777777777777777777664
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.20 E-value=6.1e-05 Score=63.90 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD--KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
...+..++..+...|++++|...|+++++.++.+. ...+..+...+.+.|++++|+..++++.+..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34456666666666777777777766665433221 2455566666666777777777777766666666666666666
Q ss_pred HHHhcCChhhHHH
Q 038606 144 AFSKWGEVDKACE 156 (666)
Q Consensus 144 ~~~~~g~~~~A~~ 156 (666)
++...|+...+..
T Consensus 115 ~~~~~g~~~~a~~ 127 (172)
T PRK02603 115 IYHKRGEKAEEAG 127 (172)
T ss_pred HHHHcCChHhHhh
Confidence 6666666544443
No 156
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.17 E-value=0.0063 Score=56.90 Aligned_cols=137 Identities=17% Similarity=0.224 Sum_probs=68.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhH------HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH-
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSY------NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV- 110 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 110 (666)
-.+.+++++.+|.++|.++.+.. ..++..+ ..++++|. ..+.+..........+..+ ...|..+..+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~---~s~~l~LF~~L 87 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFG---KSAYLPLFKAL 87 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcC---CchHHHHHHHH
Confidence 34566778888888888877664 2232222 23444544 3344444444444444321 2223333322
Q ss_pred -HHhcCChhHHHHHHHHHHHc--CCC----Cch--------H-HHHHHHHHHhcCChhhHHHHHHHHhhCCCC----cch
Q 038606 111 -YCNSGQFDKALSVFNEIIDH--GWV----DEH--------V-FSILLVAFSKWGEVDKACELIERMDDCNIR----LNE 170 (666)
Q Consensus 111 -~~~~~~~~~A~~~~~~~~~~--~~~----~~~--------~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~ 170 (666)
+-+.+++.+|.+.+..-.++ +.. +.. . -+..+..+...|.+.++..+++++...-.+ -+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 23667777777777655443 111 110 0 123344556666666666666665543222 455
Q ss_pred hhHHHHHHhh
Q 038606 171 KTFCVLIHGF 180 (666)
Q Consensus 171 ~~~~~l~~~~ 180 (666)
.+|+.++-.+
T Consensus 168 d~yd~~vlml 177 (549)
T PF07079_consen 168 DMYDRAVLML 177 (549)
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=2.3e-05 Score=59.34 Aligned_cols=95 Identities=16% Similarity=0.154 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc
Q 038606 69 YNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW 148 (666)
Q Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (666)
+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.|+......+.++.++..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 455666666677777777777776665332 3345555666666667777777777766666665555666666666666
Q ss_pred CChhhHHHHHHHHhhC
Q 038606 149 GEVDKACELIERMDDC 164 (666)
Q Consensus 149 g~~~~A~~~~~~~~~~ 164 (666)
|++++|...+....+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 6666666666665543
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=5.8e-05 Score=64.02 Aligned_cols=97 Identities=8% Similarity=-0.074 Sum_probs=76.0
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN-NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP 106 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 106 (666)
.....+..++..+...|++++|...|+++++....+++ ...+..++.++.+.|++++|...++++.+..+. +...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHH
Confidence 34556788999999999999999999999976521222 468899999999999999999999999987544 5666777
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 038606 107 LLQVYCNSGQFDKALSVFN 125 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~ 125 (666)
+..++...|+...+..-++
T Consensus 112 lg~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHHcCChHhHhhCHH
Confidence 7888888777555444333
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.15 E-value=2.9e-06 Score=61.78 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=41.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 038606 43 VGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 43 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
+|+++.|+.+|+++.+.....++...+..++.+|.+.|++++|..++++ .+.++. +......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4566666666666666541001334444456666666666666666655 222221 22333344555666666666666
Q ss_pred HHHH
Q 038606 123 VFNE 126 (666)
Q Consensus 123 ~~~~ 126 (666)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=3.2e-05 Score=67.71 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=100.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
-+.+.++|.+|+..|.+++...|.++..|.--..+|.+.|.++.|++-.+..+..+. .-..+|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHH
Confidence 346789999999999999999999999999999999999999999999999998763 3677899999999999999999
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhh-hccCChh---HHHHHHHHHHhCCCCCCHH
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGL-CKNKQLE---MALQLYSEMKGSGITPDFE 241 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~---~a~~~~~~~~~~~~~~~~~ 241 (666)
++.|++.++. .|+-.+|..=+... -+.+... .+...++-....|..|+..
T Consensus 169 ~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999887 46666665444433 2333333 3444455444555546543
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.12 E-value=3.7e-06 Score=61.19 Aligned_cols=81 Identities=14% Similarity=0.233 Sum_probs=42.3
Q ss_pred cCChhHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHH
Q 038606 79 SCSVDLVEMRLKEMQDYGWG-YDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACEL 157 (666)
Q Consensus 79 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (666)
+|+++.|..+|+++.+..+. ++...+..+..+|.+.|++++|..++++ .+.++.+......++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45566666666666555432 1333444455666666666666666655 333333334444455566666666666666
Q ss_pred HHH
Q 038606 158 IER 160 (666)
Q Consensus 158 ~~~ 160 (666)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=3.5e-05 Score=65.14 Aligned_cols=101 Identities=9% Similarity=0.005 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCChhHHHHH
Q 038606 46 VEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY--DKYTLTPLLQVYCNSGQFDKALSV 123 (666)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~ 123 (666)
+..+...+..+.+..........|..++..+...|++++|...|++++...+.+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444455555543332111223455666666667777777777777776543222 123566666667777777777777
Q ss_pred HHHHHHcCCCCchHHHHHHHHHH
Q 038606 124 FNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
++++....+.....+..++.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 77776666555555555555555
No 163
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.09 E-value=0.0085 Score=59.06 Aligned_cols=243 Identities=16% Similarity=0.130 Sum_probs=126.9
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHH--HHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQ--VKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
..+...+++.+....+.-++..+=+. ..+. .|.+..|..+.......-.++.|+..|-+.-.- +.......|
T Consensus 657 ~~ii~~~ikslrD~~~Lve~vgledA~qfiEd---nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl 730 (1189)
T KOG2041|consen 657 TCIIEVMIKSLRDVMNLVEAVGLEDAIQFIED---NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRL 730 (1189)
T ss_pred ceEEEEEehhhhhHHHHHHHhchHHHHHHHhc---CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHh
Confidence 33445556665554444444443322 2333 478888888887776666666666655444221 111111111
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
- .+.+.. ..-+....-.|.+++|++++-++.+++. .+..+.+.|++-
T Consensus 731 ~-----------------~i~s~~-------~q~aei~~~~g~feeaek~yld~drrDL---------Aielr~klgDwf 777 (1189)
T KOG2041|consen 731 R-----------------TIHSKE-------QQRAEISAFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWF 777 (1189)
T ss_pred h-----------------hhhhHH-------HHhHhHhhhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHH
Confidence 1 111100 0011122334777888888777766532 355566777777
Q ss_pred HHHHHHHHHHhCCCCcc---HHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHH
Q 038606 188 KALQLFDKMTKSGFASD---AAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIW 264 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 264 (666)
+..+++..--.. ..| ...|+.+...++....+++|.+.|..-..
T Consensus 778 rV~qL~r~g~~d--~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------------------------------- 824 (1189)
T KOG2041|consen 778 RVYQLIRNGGSD--DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------------------------------- 824 (1189)
T ss_pred HHHHHHHccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------------
Confidence 666665542211 111 23577777777777777777777755421
Q ss_pred hhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 038606 265 EDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLAL 344 (666)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 344 (666)
....+.++.....+++-..+.+.+ |.+....-.+..++...|.-++|.
T Consensus 825 -----------~e~~~ecly~le~f~~LE~la~~L---------------------pe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 825 -----------TENQIECLYRLELFGELEVLARTL---------------------PEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred -----------hHhHHHHHHHHHhhhhHHHHHHhc---------------------CcccchHHHHHHHHHhhchHHHHH
Confidence 112233344444444433333332 445555666777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 345 SLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREM 385 (666)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 385 (666)
+.|-+... |. ..++.|...++|.+|.++-+..
T Consensus 873 ~a~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 873 EAYLRRSL----PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHhccC----cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 76644321 21 2345566777777777766554
No 164
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00016 Score=64.02 Aligned_cols=118 Identities=15% Similarity=0.093 Sum_probs=98.9
Q ss_pred hHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC---ChhHHHHHH
Q 038606 13 PLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC---SVDLVEMRL 89 (666)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~ 89 (666)
..+.-++.-+. ..|.+.+-+-.|++.|..+|++..|...|..+.+.. ++|+..+..+..++..+. +-.++..+|
T Consensus 140 ~l~a~Le~~L~-~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 140 ALIARLETHLQ-QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHH-hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 33334444444 456689999999999999999999999999999998 789999999998876554 356899999
Q ss_pred HHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038606 90 KEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD 134 (666)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 134 (666)
+++++.++. |..+...|...++..|++.+|...|+.+.+..|.+
T Consensus 217 ~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 217 RQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999998766 78888888899999999999999999999987744
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.06 E-value=0.00019 Score=71.75 Aligned_cols=139 Identities=14% Similarity=0.056 Sum_probs=80.8
Q ss_pred hhcCCCcchHHHHHHHHhc--cC---ChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCC--------hhHHHHHHH
Q 038606 24 SRCFMSPGALGFLIRCLGS--VG---LVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCS--------VDLVEMRLK 90 (666)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~ 90 (666)
...+.++++|...+++... .+ +.+.|..+|+++++.+ |.+...|..+..++..... ...+....+
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 4566677888776666443 22 2668888888888887 5666677766555533211 222333333
Q ss_pred HHHhcC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 91 EMQDYG-WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 91 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
+..... .+.++..+..+.......|++++|...++++...++ +...|..++.++...|+.++|.+.++++...+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332221 122334455454444455666666666666666665 34566666666666666666666666666654
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.002 Score=59.32 Aligned_cols=273 Identities=14% Similarity=0.003 Sum_probs=158.6
Q ss_pred hhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 038606 8 ARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEM 87 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 87 (666)
..+...+...+...++-.+. +...|...+..+..-|++++|..-.++..+.. +...-.+....+++...++..+|..
T Consensus 62 ~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k--d~~~k~~~r~~~c~~a~~~~i~A~~ 138 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK--DGFSKGQLREGQCHLALSDLIEAEE 138 (486)
T ss_pred HhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC--CCccccccchhhhhhhhHHHHHHHH
Confidence 34555666666666664443 57778889999999999999999888887765 3444566666777777777666665
Q ss_pred HHHHHH------------hc---CCC-CCcccHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC
Q 038606 88 RLKEMQ------------DY---GWG-YDKYTLTPL-LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGE 150 (666)
Q Consensus 88 ~~~~~~------------~~---~~~-~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (666)
.++.-. .. ... |.-..+..+ ..++...|++++|...--.+++.++.+..+...-..++.-.++
T Consensus 139 ~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 139 KLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDN 218 (486)
T ss_pred HhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccc
Confidence 554211 10 000 111122211 2344455777777777666666666666666666666666677
Q ss_pred hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHH
Q 038606 151 VDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSE 230 (666)
Q Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 230 (666)
.+.|...|++.+..+ |+...-.. .-.-.+.++.+.+. ..-..+.|++..|.+.|.+
T Consensus 219 ~~ka~~hf~qal~ld--pdh~~sk~----------~~~~~k~le~~k~~------------gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 219 ADKAINHFQQALRLD--PDHQKSKS----------ASMMPKKLEVKKER------------GNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred hHHHHHHHhhhhccC--hhhhhHHh----------HhhhHHHHHHHHhh------------hhhHhhccchhHHHHHHHH
Confidence 777777777776653 22211111 11111112222221 2334567888888888877
Q ss_pred HHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhH
Q 038606 231 MKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGV 310 (666)
Q Consensus 231 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 310 (666)
.+.. .|+.. .+....|.....+..+.|+..+|+.--+.....+
T Consensus 275 al~i--dP~n~----------------------------~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD------- 317 (486)
T KOG0550|consen 275 ALNI--DPSNK----------------------------KTNAKLYGNRALVNIRLGRLREAISDCNEALKID------- 317 (486)
T ss_pred hhcC--Ccccc----------------------------chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-------
Confidence 7653 34421 1112445555566677777777777777666543
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038606 311 EMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG 354 (666)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 354 (666)
+.-...+..-..++...++++.|.+-++...+..
T Consensus 318 ----------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 318 ----------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2333344445556666677777777777766543
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=7.2e-05 Score=71.51 Aligned_cols=93 Identities=14% Similarity=-0.002 Sum_probs=68.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCCh
Q 038606 72 LLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEV 151 (666)
Q Consensus 72 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (666)
.+..+...|++++|...|+++++.++. +...+..+..+|.+.|++++|+..+++++..+|.++.+|..++.++...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 355566777777777777777776554 5666777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHhhCC
Q 038606 152 DKACELIERMDDCN 165 (666)
Q Consensus 152 ~~A~~~~~~~~~~~ 165 (666)
++|...|+++++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777654
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.03 E-value=0.0023 Score=51.86 Aligned_cols=136 Identities=15% Similarity=0.089 Sum_probs=96.1
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHH
Q 038606 496 CPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTT 575 (666)
Q Consensus 496 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 575 (666)
.|++..-..+..+....|+..+|...|++...--+..|......+.++....+++..|...++++.+.++..-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45666666677778888888888888888776545557777778888888888888888888888776553333445556
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 576 LIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
+.+.+...|.+.+|...|+...+. -|++..-......+.+.|+.+++..-+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 777888888888888888888774 55655555555566677777766655544443
No 169
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.02 E-value=1.8e-05 Score=55.10 Aligned_cols=66 Identities=18% Similarity=0.002 Sum_probs=50.5
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhcC
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC-SVDLVEMRLKEMQDYG 96 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 96 (666)
++.+|..++..+...|++++|+..|.++++.+ |.+...|..++.++.+.| ++++|.+.+++.++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34567777888888888888888888888776 567778888888888887 6888888888777643
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=2.4e-05 Score=53.62 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG 96 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 96 (666)
++..+...|++++|...|+++++.. |.+...+..++.++...|++++|..+|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5666777777777777777777776 5667777777777777777777777777777654
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.99 E-value=2.3e-05 Score=53.64 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=29.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
..+.+.|++++|+..|+++.+..|.++.++..++.++...|++++|...|+++++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555443
No 172
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.96 E-value=0.017 Score=54.06 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhH-HHH
Q 038606 499 VVAYNIIISGLCKAQRVAEAEDLFNEMITKG-LIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITY-TTL 576 (666)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l 576 (666)
..+|...++...+..-.+.|..+|-++.+.| +.++..++++++..++ .|+...|..+|+--....+ |...| +..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~---d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFP---DSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCC---CchHHHHHH
Confidence 3456666666667777788888888888777 4566777777776554 5777788888877666643 33333 445
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038606 577 IDGLCIAGRPDDAIMLWNEMEEKGCAPN--RITFMALITGLCKCDRPRAALVHFRMMKEK 634 (666)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 634 (666)
+..+...++-+.|..+|+..++. +..+ ..+|..+|.--..-|+...+..+=+++.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 55666777778888888865543 2223 556777777666778887777777777654
No 173
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.94 E-value=0.0017 Score=56.64 Aligned_cols=178 Identities=17% Similarity=0.056 Sum_probs=102.9
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVP-NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP 106 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 106 (666)
.+++.+...+..+...|++.+|.+.|+.+....+..| -..+...++.++.+.|+++.|...+++.++..|......+..
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 3566777888888899999999999999998762111 234677788889999999999999999888755533222222
Q ss_pred --HHHHHHh-----------cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhH
Q 038606 107 --LLQVYCN-----------SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTF 173 (666)
Q Consensus 107 --l~~~~~~-----------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 173 (666)
++.++.. .+...+|...|+.+.+.-|.++. ..+|...+..+... .-.. -
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y--------------~~~A~~~l~~l~~~---la~~-e 144 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY--------------AEEAKKRLAELRNR---LAEH-E 144 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT--------------HHHHHHHHHHHHHH---HHHH-H
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH--------------HHHHHHHHHHHHHH---HHHH-H
Confidence 2222111 12234666666666666554332 23333333333221 0011 1
Q ss_pred HHHHHhhhccCCHHHHHHHHHHHHhCCCCccH----HHHHHHHHhhhccCChhHHH
Q 038606 174 CVLIHGFVKKSRVDKALQLFDKMTKSGFASDA----AMYDVIIGGLCKNKQLEMAL 225 (666)
Q Consensus 174 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~ 225 (666)
-.+...|.+.|.+..|..-++.+.+. -|+. .....++.+|.+.|..+.+.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 12556778888888888888888775 2332 34566777777777776443
No 174
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.92 E-value=0.0025 Score=57.05 Aligned_cols=70 Identities=9% Similarity=0.005 Sum_probs=38.6
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccH---HHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTL---TPLLQVYCNSGQFDKALSVFNEIIDHGWVDE 135 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 135 (666)
+...+...+..+...|++++|.+.|+++....+.. +... ..++.++.+.+++++|+..+++..+..|.++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 34444455555566666666666666666654332 2221 3344555666666666666666666655443
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.92 E-value=0.00044 Score=53.32 Aligned_cols=98 Identities=22% Similarity=0.073 Sum_probs=48.8
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcccHHHH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN-NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY--DKYTLTPL 107 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 107 (666)
.+...++.++...|+.++|..+|++.+..++..++ ...+..+...+...|++++|..++++.....+.+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 34455566666666666666666666665431111 2345555556666666666666666665542220 11111122
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 038606 108 LQVYCNSGQFDKALSVFNEII 128 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~ 128 (666)
..++...|+.++|++.+-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 233444555655555554433
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.92 E-value=0.00015 Score=66.71 Aligned_cols=129 Identities=10% Similarity=0.065 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN-SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
+|..+++..-+.+..+.|+.+|.++.+.+. .+..+|......-.+ .++.+.|..+|+...+.-+.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 344445555555555555555555543211 122333333333222 334444555555555544444444554455555
Q ss_pred hcCChhhHHHHHHHHhhCCCCcch---hhHHHHHHhhhccCCHHHHHHHHHHHHh
Q 038606 147 KWGEVDKACELIERMDDCNIRLNE---KTFCVLIHGFVKKSRVDKALQLFDKMTK 198 (666)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (666)
..|+.+.|..+|++.+.. +..+. ..|...+..-.+.|+++.+.++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555443 11111 2344444444444444444444444443
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.91 E-value=0.021 Score=53.57 Aligned_cols=139 Identities=12% Similarity=0.164 Sum_probs=93.2
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcC----CCcchH-HHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHH--HH
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCF----MSPGAL-GFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLE--AL 76 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~--~~ 76 (666)
+|.++++..+++.++..+.+..-. .+.+++ +.++.+|.. .+.+..........+.. | ...|..+.. ..
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF---G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc---C-CchHHHHHHHHHH
Confidence 678899999999999888886422 123443 467788875 56666666666666654 3 334445444 35
Q ss_pred HhcCChhHHHHHHHHHHhc--CCCC------------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCchH
Q 038606 77 CKSCSVDLVEMRLKEMQDY--GWGY------------DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW-----VDEHV 137 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ 137 (666)
.+.|.+.+|.+.+...... +..+ |...-+..+..+...|++.+++.+++++...-. .+...
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 6889999999999888765 2221 111112345667789999999999998876422 36677
Q ss_pred HHHHHHHHHh
Q 038606 138 FSILLVAFSK 147 (666)
Q Consensus 138 ~~~l~~~~~~ 147 (666)
|+.++..+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8876666654
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.90 E-value=0.00026 Score=59.81 Aligned_cols=111 Identities=9% Similarity=-0.120 Sum_probs=78.9
Q ss_pred HHHHHHHHh-hhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 038606 14 LRVLAQDVV-KSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVP-NNYSYNCLLEALCKSCSVDLVEMRLKE 91 (666)
Q Consensus 14 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 91 (666)
+...+..+. ..+.......+..++..+...|++++|...|+.++.....++ ...++..++.++...|++++|...+++
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 334445553 333333466678899999999999999999999987652122 235899999999999999999999999
Q ss_pred HHhcCCCCCcccHHHHHHHHH-------hcCChhHHHHHHH
Q 038606 92 MQDYGWGYDKYTLTPLLQVYC-------NSGQFDKALSVFN 125 (666)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~A~~~~~ 125 (666)
+.+..+. ....+..+...+. ..|+++.|...++
T Consensus 98 Al~~~~~-~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 98 ALERNPF-LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhCcC-cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9986443 4455666666666 5566654444433
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.89 E-value=0.00057 Score=63.31 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=53.6
Q ss_pred HHHHHHHHHhc-CChhhHHHHHHHHhhC----CC-CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCC-----CccHH
Q 038606 138 FSILLVAFSKW-GEVDKACELIERMDDC----NI-RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGF-----ASDAA 206 (666)
Q Consensus 138 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~ 206 (666)
+..++..|... |++++|.+.|+++.+. +- ..-..++..+...+.+.|++++|.++|+++..... ..++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34445556666 7777777777776542 10 11123445566677777888888888877765321 11222
Q ss_pred -HHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 207 -MYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 207 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
.|...+-++...||...|...+++....
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2233344555677777777777777653
No 180
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.89 E-value=0.00021 Score=65.75 Aligned_cols=144 Identities=13% Similarity=0.134 Sum_probs=79.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh-cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhh
Q 038606 103 TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK-WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFV 181 (666)
Q Consensus 103 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (666)
+|..+++...+.+..+.|+.+|+++.+.......+|...+..-.. .++.+.|..+|+...+. ++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 455566666666666666666666665544455555555555333 34445566666666654 3445555666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccH---HHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 038606 182 KKSRVDKALQLFDKMTKSGFASDA---AMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSC 250 (666)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 250 (666)
+.|+.+.|+.+|++.... ++++. ..|...+..=.+.|+.+.+..+.+++.+. .|+...+..+...|
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 666666666666666654 12222 35666666666666666666666666552 33334444444444
No 181
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.88 E-value=2.6e-05 Score=45.38 Aligned_cols=33 Identities=58% Similarity=1.025 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 038606 572 TYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPN 604 (666)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 604 (666)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455666666666666666666666666555554
No 182
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.87 E-value=0.00025 Score=64.75 Aligned_cols=276 Identities=13% Similarity=0.028 Sum_probs=161.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHHH--Hhc--CCC-CCcccHHH
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNN----YSYNCLLEALCKSCSVDLVEMRLKEM--QDY--GWG-YDKYTLTP 106 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~--~~~-~~~~~~~~ 106 (666)
=..-+++.|+......+|+.+++.+ ..|. .+|..|+++|.-.+++++|.++...= +.+ |-. ....+-..
T Consensus 23 EGERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 23 EGERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 3456788999999999999999987 4454 45777889999999999999875322 111 111 12333344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH----cC--CCCchHHHHHHHHHHhcCC--------------------hhhHHHHHHH
Q 038606 107 LLQVYCNSGQFDKALSVFNEIID----HG--WVDEHVFSILLVAFSKWGE--------------------VDKACELIER 160 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 160 (666)
|...+--.|.+++|+-...+-+. .+ .....++.-++..|-..|+ ++.|.+.|.+
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~e 180 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYME 180 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHH
Confidence 55566666888888765443322 22 1234567777777776653 2333344433
Q ss_pred Hhh----CC-CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHh----CCC-CccHHHHHHHHHhhhccCChhHHHHHHHH
Q 038606 161 MDD----CN-IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTK----SGF-ASDAAMYDVIIGGLCKNKQLEMALQLYSE 230 (666)
Q Consensus 161 ~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 230 (666)
-++ .+ -......|..|.+.|.-.|+++.|+...+.-.+ .|- ......+..+..+++-.|+++.|.+.|+.
T Consensus 181 NL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 181 NLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred HHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 221 11 001223455666667777888888877664322 221 11234677788888888888888888876
Q ss_pred HHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhH
Q 038606 231 MKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGV 310 (666)
Q Consensus 231 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 310 (666)
.....++....+.. ...+.++.+.|.-..++++|+.++.+-+....
T Consensus 261 tl~LAielg~r~vE----------------------------AQscYSLgNtytll~e~~kAI~Yh~rHLaIAq------ 306 (639)
T KOG1130|consen 261 TLNLAIELGNRTVE----------------------------AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ------ 306 (639)
T ss_pred HHHHHHHhcchhHH----------------------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 54322111111110 14566677777777788888887765432110
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 311 EMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
.-....-...++-++..++...|.-++|+...+.-++
T Consensus 307 -----eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 307 -----ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred -----HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0000123445566667777777777777666655443
No 183
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.5e-05 Score=45.45 Aligned_cols=33 Identities=48% Similarity=0.909 Sum_probs=25.6
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHHHhCCCCCC
Q 038606 207 MYDVIIGGLCKNKQLEMALQLYSEMKGSGITPD 239 (666)
Q Consensus 207 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 239 (666)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777778888888888888888777777776
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=3.5e-05 Score=53.40 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=25.6
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 42 SVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
+.|++++|.++|+++...+ |.+...+..++.+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555444 344445555555555555555555555555443
No 185
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.85 E-value=2.2e-05 Score=45.28 Aligned_cols=33 Identities=33% Similarity=0.625 Sum_probs=24.0
Q ss_pred HHHHHHHHhhhccCChhHHHHHHHHHHhCCCCC
Q 038606 206 AMYDVIIGGLCKNKQLEMALQLYSEMKGSGITP 238 (666)
Q Consensus 206 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 238 (666)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.035 Score=55.02 Aligned_cols=178 Identities=11% Similarity=0.015 Sum_probs=115.1
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHH----------HHHHhcCChhHHHHHHHHHHhcC
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLL----------EALCKSCSVDLVEMRLKEMQDYG 96 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~ 96 (666)
.|-|..+..++......-.++-|...|-+...-. -...-..|. ..-.--|+|++|.++|-.+.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~----Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA----GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc----chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh
Confidence 4578889999988888888899999887765432 221111111 22233488999999998886643
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHH
Q 038606 97 WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW--VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFC 174 (666)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 174 (666)
..+..+.+.|+|-...++++.--.... .-..+|..++..+.....+++|.+++..-... .
T Consensus 765 ---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e 826 (1189)
T KOG2041|consen 765 ---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------E 826 (1189)
T ss_pred ---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------H
Confidence 235666778888777666543111110 12357888888888888888888888765432 2
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 175 VLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 175 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
..+..+.+..++++-+.+...+. .|....-.+..++...|.-++|.+.|-+.
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 34555666666666555554443 44455667778888888888887776443
No 187
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.84 E-value=3.1e-05 Score=44.65 Aligned_cols=32 Identities=44% Similarity=0.812 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 038606 572 TYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAP 603 (666)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 603 (666)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.84 E-value=5.4e-05 Score=52.61 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHHc
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSG-QFDKALSVFNEIIDH 130 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~ 130 (666)
+.+|..++..+...|++++|+..|+++++.++. ++..+..+..++...| ++++|++.++++.+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 334444445555555555555555555444332 3444444444444444 345555554444443
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00038 Score=62.68 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=40.7
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCcccHHHHHHHHHhcC
Q 038606 41 GSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG--YDKYTLTPLLQVYCNSG 115 (666)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 115 (666)
.+.|++++|...|+.+++.. |.+ +.++..++.+|...|++++|...|+.+++..+. ..+..+..++..+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 33455555555555555544 222 134445555555555555555555555443221 11222333334444445
Q ss_pred ChhHHHHHHHHHHHcCC
Q 038606 116 QFDKALSVFNEIIDHGW 132 (666)
Q Consensus 116 ~~~~A~~~~~~~~~~~~ 132 (666)
++++|...|+.+.+..|
T Consensus 232 ~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 232 DTAKAKAVYQQVIKKYP 248 (263)
T ss_pred CHHHHHHHHHHHHHHCc
Confidence 55555555555544443
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.80 E-value=6.8e-05 Score=51.96 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=32.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
+.|++++|++.|+++....|.++.++..++.++.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666666666666666666655
No 191
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.78 E-value=0.031 Score=51.42 Aligned_cols=285 Identities=12% Similarity=0.086 Sum_probs=175.1
Q ss_pred hhhhchHHHHHHHHhhh-hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038606 8 ARRIAPLRVLAQDVVKS-RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVE 86 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (666)
+|.-..++.+-++.-+. +..--|-+...=+++-.-.|++++|.+-|+.|.... ....--...|.-..-+.|..+.|+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHH
Confidence 44455555555443321 111112223334466677899999999999999631 011112233333345789999999
Q ss_pred HHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchH----HHHHHHHH---HhcCChhhHHHHHH
Q 038606 87 MRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHV----FSILLVAF---SKWGEVDKACELIE 159 (666)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~l~~~~---~~~g~~~~A~~~~~ 159 (666)
.+.+..-+.-+. -...+...+...+..|+++.|+++.+.-.......... -..|+.+- .-.-+...|...-.
T Consensus 175 ~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999876544 56778888999999999999999999876654432221 12222211 12235666666666
Q ss_pred HHhhCCCCcchhh-HHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh-CCCC
Q 038606 160 RMDDCNIRLNEKT-FCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG-SGIT 237 (666)
Q Consensus 160 ~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~ 237 (666)
+..+. .|+..- -......+.+.|+..++-.+++.+-+...+|+ ++... .+.+.|+ .++.-+++..+ ...+
T Consensus 254 ~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk 325 (531)
T COG3898 254 EANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLK 325 (531)
T ss_pred HHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcC
Confidence 66654 333322 22334678899999999999999998854444 43322 2334554 44444444433 1234
Q ss_pred CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhc
Q 038606 238 PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFK 317 (666)
Q Consensus 238 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (666)
|+.. .....+...-...|++..|..--+.....
T Consensus 326 ~nna--------------------------------es~~~va~aAlda~e~~~ARa~Aeaa~r~--------------- 358 (531)
T COG3898 326 PNNA--------------------------------ESSLAVAEAALDAGEFSAARAKAEAAARE--------------- 358 (531)
T ss_pred ccch--------------------------------HHHHHHHHHHHhccchHHHHHHHHHHhhh---------------
Confidence 5431 33344455666778888777777666654
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHc
Q 038606 318 GTVSPNTSSFDIIINTLLK-DGKLDLALSLFREMTQI 353 (666)
Q Consensus 318 ~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 353 (666)
.|....|..|...-.- .|+-.++..++.+..+.
T Consensus 359 ---~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 ---APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ---CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5777777777766554 49999999999888774
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.00064 Score=54.59 Aligned_cols=92 Identities=12% Similarity=-0.143 Sum_probs=54.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNS 114 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (666)
..+--+..+|++++|..+|.-+...+ +-|..-|..|+.++-..+++++|...|..+...+.. |+....-...+|...
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l 118 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHh
Confidence 34444555666666666666666555 455555666666666666666666666665554432 444444555666666
Q ss_pred CChhHHHHHHHHHHH
Q 038606 115 GQFDKALSVFNEIID 129 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~ 129 (666)
|+.+.|+..|+.+..
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 666666666666555
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.0019 Score=64.66 Aligned_cols=137 Identities=14% Similarity=0.033 Sum_probs=100.1
Q ss_pred CCCCcccHHHHHHHHHh--c---CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC--------ChhhHHHHHHHHhh
Q 038606 97 WGYDKYTLTPLLQVYCN--S---GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG--------EVDKACELIERMDD 163 (666)
Q Consensus 97 ~~~~~~~~~~l~~~~~~--~---~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~ 163 (666)
.+.+...|...+++... . ++...|+.+|+++.+.+|....++..+..++.... +...+.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44566777777766433 2 33779999999999999888877777666554332 23344444555444
Q ss_pred CC-CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 164 CN-IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 164 ~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
.. .+.+...|..+...+...|++++|...+++....+ |+...|..+...+...|+.++|.+.|++....+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 21 23455677777666777899999999999999885 678899999999999999999999999998754
No 194
>PRK11906 transcriptional regulator; Provisional
Probab=97.72 E-value=0.0045 Score=58.86 Aligned_cols=163 Identities=13% Similarity=0.049 Sum_probs=114.3
Q ss_pred chH--HHHHHHHhc--cC---ChHHHHHHHHHHH---HcCCCCCChhhHHHHHHHHHhc---------CChhHHHHHHHH
Q 038606 31 GAL--GFLIRCLGS--VG---LVEEANMLFDQVK---REGLCVPNNYSYNCLLEALCKS---------CSVDLVEMRLKE 91 (666)
Q Consensus 31 ~~~--~~l~~~~~~--~~---~~~~A~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~ 91 (666)
+.| ..++++... .+ ..+.|+.+|.++. +.+ |.....|..+..++... .+..+|....++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld--p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ--TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC--cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 666 555554444 22 3568888999998 544 44466776666554422 245577888888
Q ss_pred HHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchh
Q 038606 92 MQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEK 171 (666)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 171 (666)
+++.+.. |+.....+..+....++++.|..+|+++...+|....+|...+....-.|+.++|.+.+++..+.++..-..
T Consensus 330 Aveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 330 VSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 8888765 888888888877888889999999999999998888889888888889999999999999988775332222
Q ss_pred hHHHH-HHhhhccCCHHHHHHHHHHHH
Q 038606 172 TFCVL-IHGFVKKSRVDKALQLFDKMT 197 (666)
Q Consensus 172 ~~~~l-~~~~~~~~~~~~A~~~~~~~~ 197 (666)
....+ +..|+ ...+++|.+++-+-.
T Consensus 409 ~~~~~~~~~~~-~~~~~~~~~~~~~~~ 434 (458)
T PRK11906 409 VVIKECVDMYV-PNPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHHHc-CCchhhhHHHHhhcc
Confidence 22222 23444 455777777766543
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.72 E-value=0.00052 Score=52.91 Aligned_cols=91 Identities=20% Similarity=-0.011 Sum_probs=75.0
Q ss_pred hhhhhHhhhhchHHHHHHHHhhhhcCCC--cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---ChhhHHHHHHHH
Q 038606 2 ASILSRARRIAPLRVLAQDVVKSRCFMS--PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVP---NNYSYNCLLEAL 76 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~~~ 76 (666)
|+.+...|+.++|+.++++.+..|.... ...+..++..+...|++++|..+|++..... |. +......+.-++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 5667788999999999999999875443 5567789999999999999999999999875 33 444555566678
Q ss_pred HhcCChhHHHHHHHHHHh
Q 038606 77 CKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~ 94 (666)
...|+.++|..++-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 899999999999988765
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.71 E-value=0.0017 Score=56.72 Aligned_cols=170 Identities=15% Similarity=0.049 Sum_probs=95.7
Q ss_pred hhhhhHhhhhchHHHHHHHHhhh--hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHHh
Q 038606 2 ASILSRARRIAPLRVLAQDVVKS--RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN-NYSYNCLLEALCK 78 (666)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 78 (666)
|..+...|++.+|+..++.+.+. +++..+.+...++.++.+.|+++.|...|++.++..+-.|. ..++..++.++..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 34456789999999999999987 44556778899999999999999999999999988721122 1244444444332
Q ss_pred c-----------CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 79 S-----------CSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 79 ~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
. +...+|...|+.+++.-| .+.-..+|...+..+... -...-..++..|.+
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~yP---------------~S~y~~~A~~~l~~l~~~---la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKRYP---------------NSEYAEEAKKRLAELRNR---LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH-T---------------TSTTHHHHHHHHHHHHHH---HHHHHHHHHHHHHC
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHHCc---------------CchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 2 123456666666665432 222333333333332221 01112345556666
Q ss_pred cCChhhHHHHHHHHhhCCCCc--chhhHHHHHHhhhccCCHHHH
Q 038606 148 WGEVDKACELIERMDDCNIRL--NEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A 189 (666)
.|.+..|..-++.+++.-+.. .......++.+|.+.|..+.|
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 666666666666666542111 112334455566666665533
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.69 E-value=0.02 Score=53.09 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=58.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHcc-CChHHHHHHHHHHHhc----CCCc--cHHHHHHHHHHHH
Q 038606 438 ELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDI-KRVDLALELFRDICAH----GCCP--DVVAYNIIISGLC 510 (666)
Q Consensus 438 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~ 510 (666)
.|...|++..|-..+..+ ...|... |+++.|++.|++..+. + .+ -..++..+...+.
T Consensus 103 ~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 455556655554444443 2334455 6777777777665431 1 11 1234455666777
Q ss_pred ccCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHccCChhHHHHHHHHHHhcCC
Q 038606 511 KAQRVAEAEDLFNEMITKGLI-----PSVA-TYNLLINGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 511 ~~~~~~~a~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
+.|++++|.++|+++...... .+.. .+...+-++...||+-.|.+.+++.....+
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 778888888888877664221 1111 122233355566777777777777765543
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.66 E-value=0.00095 Score=63.84 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=48.6
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHH
Q 038606 497 PDVVAYNIIISGLCKAQRVAEAEDLFNEMITK--GLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYT 574 (666)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 574 (666)
.+......+++.+....+.+++..++.++... ....-..|..++++.|...|..++++.+++.=...|. -||..+++
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~D~~s~n 142 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FPDNFSFN 142 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CCChhhHH
Confidence 34444444444444444444455554444443 1111122333444444444444444444444333333 44444455
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 038606 575 TLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITF 608 (666)
Q Consensus 575 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 608 (666)
.|++.+.+.|++..|.++...|...+...++.++
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~ 176 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQ 176 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHH
Confidence 5555544555554444444444433333333333
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00068 Score=64.81 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 038606 321 SPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG--CMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLN 398 (666)
Q Consensus 321 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (666)
+.+......++..+....+++.+..++.+..... ...-+.+..++++.|...|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 6677778888888888888999999998887652 22223455689999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 038606 399 SMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKH 442 (666)
Q Consensus 399 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 442 (666)
.++..+.+.|++..|.++...|...+...+..++..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988877666666666655555554
No 200
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.63 E-value=0.078 Score=52.06 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=69.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhh
Q 038606 101 KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGF 180 (666)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 180 (666)
...|+.++.---...+.+.+..++..++..-|.--..|...+..-.+.|..+.+.++|++.+.. ++.....|...+..+
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3344444433333334455555566666555544445555555556666666666666666643 344444555444433
Q ss_pred h-ccCCHHHHHHHHHHHHhC-CC-CccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 181 V-KKSRVDKALQLFDKMTKS-GF-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 181 ~-~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
. ..|+.+...+.|++..+. |. -.....|...|..-..++++.....+|++.++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 345566666666665542 11 11233455555555556666666666666665
No 201
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.63 E-value=0.0018 Score=50.80 Aligned_cols=86 Identities=12% Similarity=-0.115 Sum_probs=63.4
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVP-NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
..++..+..-+....+.|++++|.+.|+.+....++.+ ...+...++-+|.+.|++++|...+++.++.+|.....-|.
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 45677777788888888999999999988888763222 23467778888888899999998888888887765555555
Q ss_pred HHHHHHH
Q 038606 106 PLLQVYC 112 (666)
Q Consensus 106 ~l~~~~~ 112 (666)
..+.++.
T Consensus 87 ~Y~~gL~ 93 (142)
T PF13512_consen 87 YYMRGLS 93 (142)
T ss_pred HHHHHHH
Confidence 5555544
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.62 E-value=0.0014 Score=60.13 Aligned_cols=273 Identities=13% Similarity=0.063 Sum_probs=160.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHH--HHc--C--CCCchHHHHHHH
Q 038606 74 EALCKSCSVDLVEMRLKEMQDYGWGYDKY----TLTPLLQVYCNSGQFDKALSVFNEI--IDH--G--WVDEHVFSILLV 143 (666)
Q Consensus 74 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~--~~~--~--~~~~~~~~~l~~ 143 (666)
.-+++.|+.......|+.+++.|.+ |.. +|..|..+|...++|++|.+....= ..+ + .-...+..-++.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478999999999999999998765 543 4555677888889999999875421 111 1 112223445566
Q ss_pred HHHhcCChhhHHHHHHHHh----hCCC-CcchhhHHHHHHhhhccCC--------------------HHHHHHHHHHHHh
Q 038606 144 AFSKWGEVDKACELIERMD----DCNI-RLNEKTFCVLIHGFVKKSR--------------------VDKALQLFDKMTK 198 (666)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~ 198 (666)
.+--.|.+++|.-...+-+ +.|- ......+..+..+|...|+ ++.|.++|..-.+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6666777888765543322 2210 1122344445566654442 3344555543221
Q ss_pred ----CCC-CccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCc
Q 038606 199 ----SGF-ASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT-PDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTM 272 (666)
Q Consensus 199 ----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (666)
.|- -.--..|..|...|.-.|+++.|+...+.=+....+ -|. ...
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr-----------------------------Aae 234 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR-----------------------------AAE 234 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-----------------------------HHH
Confidence 110 001124556666666677888877765543321000 011 001
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038606 273 TLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 273 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 352 (666)
-.++..+.++++-.|+++.|.+.|+...... +.-+.-.....+..++...|.-..++++|+..+.+-+.
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LA-----------ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLa 303 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLA-----------IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLA 303 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHH-----------HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1456778888888999999999987654311 00011133455666778888888888888888765432
Q ss_pred c-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 353 I-----GCMQNVFLYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 353 ~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
. ........+.+|..++...|..++|+.+.+.-++
T Consensus 304 IAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 304 IAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 1224556777888888888888888877665543
No 203
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.62 E-value=0.061 Score=50.53 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=94.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHH
Q 038606 429 VKHNTLLIKELCKHGKAMEAFRFLTDMVQEG-FLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIIS 507 (666)
Q Consensus 429 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 507 (666)
..+|...+....+..-.+.|..+|-++.+.+ +.+++..+++++..++ .|+...|..+|+.-... ++.+..--+..+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3445556666667777888888888888887 5567777888877655 57888888888876654 2334444455666
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHhcCC
Q 038606 508 GLCKAQRVAEAEDLFNEMITKGLIPS--VATYNLLINGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 508 ~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
.+...++-..|..+|+..+.+ +..+ ...|..++.--..-|++..+..+=+.+.+..|
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 677788888888888866554 2223 45788888877788888888877777776644
No 204
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.61 E-value=0.015 Score=50.57 Aligned_cols=185 Identities=12% Similarity=0.023 Sum_probs=99.1
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVP-NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
+++.+..-+....+.|++++|.+.|+.+..+.++.| ...+...++-++.+.++++.|+...++..+..+.....-|...
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 455566666666778899999999988887763222 2345666677888888999998888888887665444444444
Q ss_pred HHHHHh-------cCChh---HHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhH-HHH
Q 038606 108 LQVYCN-------SGQFD---KALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTF-CVL 176 (666)
Q Consensus 108 ~~~~~~-------~~~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 176 (666)
+.++.. ..+.. .|..-|+.++..-|.+..+-. |......+... ..-+ ..+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d--------------A~~~i~~~~d~-----LA~~Em~I 173 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD--------------AKARIVKLNDA-----LAGHEMAI 173 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh--------------HHHHHHHHHHH-----HHHHHHHH
Confidence 444432 12333 444444555555553322111 11111110000 0000 123
Q ss_pred HHhhhccCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 177 IHGFVKKSRVDKALQLFDKMTKSGFASD---AAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 177 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
.+.|.+.|.+..|..-++.|.+.- +.+ ...+-.+..+|...|-.++|...-.-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENY-PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445566666666666666665541 111 22334445556666666665555444443
No 205
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.61 E-value=0.057 Score=49.91 Aligned_cols=164 Identities=18% Similarity=0.135 Sum_probs=100.9
Q ss_pred hccCChHHHHHHHHHHHHcC-CCCCCh-----hhHHHHHHHHHhcC-ChhHHHHHHHHHHhc----C----CCCCc----
Q 038606 41 GSVGLVEEANMLFDQVKREG-LCVPNN-----YSYNCLLEALCKSC-SVDLVEMRLKEMQDY----G----WGYDK---- 101 (666)
Q Consensus 41 ~~~~~~~~A~~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~---- 101 (666)
.++|+.+.|..++.++.... ...|+. ..+...+......+ +++.|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45677888888887776543 212332 22344455555666 888887777776543 1 11222
Q ss_pred -ccHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHH
Q 038606 102 -YTLTPLLQVYCNSGQF---DKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLI 177 (666)
Q Consensus 102 -~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 177 (666)
.++..++.+|...+.. ++|..+++.+.+..+..+..+..-+.++.+.++.+.+.+.+.+|+..- ......+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 3455667777777655 466667777777777777888788888888999999999999998762 22334455444
Q ss_pred Hhhh--ccCCHHHHHHHHHHHHhCCCCccH
Q 038606 178 HGFV--KKSRVDKALQLFDKMTKSGFASDA 205 (666)
Q Consensus 178 ~~~~--~~~~~~~A~~~~~~~~~~~~~~~~ 205 (666)
+.+- .......|...++.+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4431 223345666666665544334443
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.57 E-value=0.00047 Score=48.50 Aligned_cols=56 Identities=9% Similarity=-0.072 Sum_probs=29.2
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
..|.+++++++|.+.++.++..+ |.+...|...+.++.+.|++++|...|+++++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34455555555555555555544 444455555555555555555555555555544
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.54 E-value=0.0015 Score=58.85 Aligned_cols=90 Identities=12% Similarity=0.049 Sum_probs=52.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCC---chHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--cchhhHHHHHHhhhccC
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVD---EHVFSILLVAFSKWGEVDKACELIERMDDCNIR--LNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 184 (666)
.+.+.|++++|+..|+.+.+..|.+ +.++.+++.+|...|++++|...|+.+....+. .....+..+...+...|
T Consensus 152 l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 152 LVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3344566666666666666665544 346666666666666666666666666654211 11223333444555666
Q ss_pred CHHHHHHHHHHHHhC
Q 038606 185 RVDKALQLFDKMTKS 199 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~ 199 (666)
+.++|...|+.+.+.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666666654
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.52 E-value=0.0026 Score=51.17 Aligned_cols=92 Identities=14% Similarity=0.007 Sum_probs=55.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCC
Q 038606 71 CLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGE 150 (666)
Q Consensus 71 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (666)
..+--+...|++++|..+|.-+.-.++. +..-+..|..++-..+++++|+..|......++.||......+.++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3344445666666666666666555443 455555666666666666666666666655555566666666666666666
Q ss_pred hhhHHHHHHHHhh
Q 038606 151 VDKACELIERMDD 163 (666)
Q Consensus 151 ~~~A~~~~~~~~~ 163 (666)
.+.|...|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666655
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.50 E-value=0.00042 Score=48.75 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=39.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038606 74 EALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEH 136 (666)
Q Consensus 74 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 136 (666)
+.|.+.+++++|.+++++++..++. ++..+.....++.+.|++++|.+.|+.+.+.+|.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4556666666666666666666444 5556666666666666666666666666666654444
No 210
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0023 Score=54.99 Aligned_cols=163 Identities=12% Similarity=0.038 Sum_probs=112.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSG 115 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (666)
.++....+.-.+.-.++|+.-.. ...+.+++.+.-.|.+.-....+.++.+.+++-++.....+++.-.+.|
T Consensus 155 ii~~~e~~~~~ESsv~lW~KRl~--------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G 226 (366)
T KOG2796|consen 155 ILANLEQGLAEESSIRLWRKRLG--------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG 226 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHH--------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc
Confidence 34444444445677777776553 3667788888888888888889988888877778888888888888889
Q ss_pred ChhHHHHHHHHHHHcC-CCCc-----hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 116 QFDKALSVFNEIIDHG-WVDE-----HVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 116 ~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
+.+.|...|+.+.+.. ..+. .+.......+.-.+++..|...+.+++..+.. +...-|.-.-+..-.|+...|
T Consensus 227 D~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 227 DIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred cHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHH
Confidence 9999988888775432 1222 23334444666777888888888888877533 444444333334456888899
Q ss_pred HHHHHHHHhCCCCccHHHHH
Q 038606 190 LQLFDKMTKSGFASDAAMYD 209 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~ 209 (666)
++..+.+... .|...+-+
T Consensus 306 iK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 306 LKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHhcc--CCccchhh
Confidence 9999988876 34444433
No 211
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.00017 Score=40.36 Aligned_cols=29 Identities=41% Similarity=0.823 Sum_probs=18.9
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHHHhCC
Q 038606 207 MYDVIIGGLCKNKQLEMALQLYSEMKGSG 235 (666)
Q Consensus 207 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 235 (666)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666554
No 212
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00019 Score=40.22 Aligned_cols=28 Identities=39% Similarity=0.847 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 038606 572 TYTTLIDGLCIAGRPDDAIMLWNEMEEK 599 (666)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 599 (666)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444445555444444443
No 213
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.42 E-value=0.015 Score=48.61 Aligned_cols=190 Identities=14% Similarity=0.067 Sum_probs=127.4
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
+......|-..|-+.-|+-=|.+.+... |.-+.+|+-|+--+...|+++.|.+.|+...+.++..+-...|.-+..|
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y- 144 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY- 144 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-
Confidence 3445567777888888888888888876 5667888888888999999999999999999987775555555555444
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHH-HHHHHhhCCCCcchhhHHHHH-HhhhccCCHHHHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACE-LIERMDDCNIRLNEKTFCVLI-HGFVKKSRVDKAL 190 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~ 190 (666)
-.|++.-|.+-|.+.-+.+|.||.--.++- .--..-+..+|.. +.++.... +..-|...+ ..|. |+. ...
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY-l~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL--gki-S~e 216 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLY-LNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL--GKI-SEE 216 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHH-HHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH--hhc-cHH
Confidence 579999999999999998887775322222 1223345566654 44555443 333333322 3332 222 122
Q ss_pred HHHHHHHhCCCCc-------cHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 191 QLFDKMTKSGFAS-------DAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 191 ~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
.+++++.... .. =..+|--+..-+...|+.++|..+|+-....
T Consensus 217 ~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 217 TLMERLKADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3344443321 11 1346778888999999999999999988764
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.40 E-value=0.0043 Score=54.44 Aligned_cols=100 Identities=15% Similarity=-0.010 Sum_probs=61.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcccHHHHH
Q 038606 34 GFLIRCLGSVGLVEEANMLFDQVKREGLCVPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY--DKYTLTPLL 108 (666)
Q Consensus 34 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 108 (666)
...+-.+.+.|++..|...|...++.+ |.+ ..++.+|++++...|++++|...|..+.+..+.. -+..+..|.
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 334444445566777777777777665 222 2356677777777777777777777776653331 234455556
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDE 135 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~ 135 (666)
......|+.++|...|+++.+.-|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 666666777777777777776665443
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.39 E-value=0.045 Score=51.50 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=72.6
Q ss_pred hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CCChhhHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCC
Q 038606 25 RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLC--VPNNYSYNCLLEALCK---SCSVDLVEMRLKEMQDYGWGY 99 (666)
Q Consensus 25 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 99 (666)
..-.++++...++-+|....+|+.-.++.+.+.....+ +.........+-++-+ .|+.++|..++..++.....+
T Consensus 136 ~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~ 215 (374)
T PF13281_consen 136 PELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP 215 (374)
T ss_pred HhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC
Confidence 33568888888888899999999999999988875211 1233333444555666 888899999988866666667
Q ss_pred CcccHHHHHHHHHh---------cCChhHHHHHHHHHHHcC
Q 038606 100 DKYTLTPLLQVYCN---------SGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 100 ~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~ 131 (666)
++.++..+++.|-. ...+++|+..|.+.-..+
T Consensus 216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 88888877776642 123556666666655544
No 216
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.003 Score=46.66 Aligned_cols=72 Identities=17% Similarity=0.436 Sum_probs=41.3
Q ss_pred HHccCChHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038606 474 LIDIKRVDLALELFRDICAHGC-CPDVVAYNIIISGLCKAQ--------RVAEAEDLFNEMITKGLIPSVATYNLLINGW 544 (666)
Q Consensus 474 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 544 (666)
+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. +.-+.+.+++.|+..+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3344555555666666665555 556666666555544432 2334556666666666666666666666554
Q ss_pred H
Q 038606 545 C 545 (666)
Q Consensus 545 ~ 545 (666)
.
T Consensus 115 l 115 (120)
T PF08579_consen 115 L 115 (120)
T ss_pred H
Confidence 3
No 217
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.016 Score=51.46 Aligned_cols=150 Identities=13% Similarity=-0.023 Sum_probs=93.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVY 111 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (666)
.-..-+......|++.+|..+|..+.... +.+......++.+|...|+++.|..++..+..............-+..+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 33445566777888888888888888877 6677788888888888888888888888876543222222222223333
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcchhhHHHHHHhhhccC
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI-RLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 184 (666)
.+.....+...+ ++-...+|.|...-..+...+...|+.+.|.+.+-.+++++. .-|...-..++..+.-.|
T Consensus 214 ~qaa~~~~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333333332 223344566777777888888888888888877766665432 123344445555544444
No 218
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.37 E-value=0.0039 Score=46.09 Aligned_cols=78 Identities=12% Similarity=0.215 Sum_probs=59.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------ChhHHHHHHHHHHHcCCCCCHHHHHH
Q 038606 575 TLIDGLCIAGRPDDAIMLWNEMEEKGC-APNRITFMALITGLCKCD--------RPRAALVHFRMMKEKGMKPDMFVFVA 645 (666)
Q Consensus 575 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~ 645 (666)
..|.-+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. +.-+.+.+|+.|...+++|+..+|..
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 345555666888888888888888888 788888888887766432 34467788888888888899999988
Q ss_pred HHHHHHh
Q 038606 646 LISAFLS 652 (666)
Q Consensus 646 l~~~~~~ 652 (666)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887764
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.18 Score=51.51 Aligned_cols=181 Identities=16% Similarity=0.128 Sum_probs=117.6
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPN--NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
+.....-+..+.+..-++-|..+-..-.- +++ ......-+.-+.+.|++++|...|-+.+.. .+| ..+
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 34455667777777778888776554321 111 123444455667889999999999888653 222 345
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
+.-|.......+-...++.+.+.+..+.+.-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 6666666777777778888888888888888889999999999988877776665 2211 112344556666667777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
+|.-+-.+... .......++. ..|++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 77666555442 2333333333 357888888887665
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0043 Score=57.39 Aligned_cols=141 Identities=13% Similarity=0.035 Sum_probs=81.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNS 114 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (666)
.-...|++.|++..|...|+.+...-. +. +.-+.++..... .+ -...++.+..++.+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~---~~-----------~~~~~ee~~~~~-~~-------k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLE---YR-----------RSFDEEEQKKAE-AL-------KLACHLNLAACYLKL 270 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhh---cc-----------ccCCHHHHHHHH-HH-------HHHHhhHHHHHHHhh
Confidence 345789999999999999999775421 00 000111111111 11 112344555666677
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCH-HHHHHHH
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRV-DKALQLF 193 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~ 193 (666)
+++.+|++..++++..++.+.-+...-+.++...|+++.|+..|+++.+..+ .|..+-+.++..-.+.... +...++|
T Consensus 271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P-~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP-SNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777766667777777777777777777777777776542 2344444444443333333 3335666
Q ss_pred HHHHh
Q 038606 194 DKMTK 198 (666)
Q Consensus 194 ~~~~~ 198 (666)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66654
No 221
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.18 Score=47.12 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038606 275 LCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG 354 (666)
Q Consensus 275 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 354 (666)
+.+..+.-+...|+...|.++-+... .|+...|...+.+++..++|++-..+-..
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------------------v~dkrfw~lki~aLa~~~~w~eL~~fa~s----- 233 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK--------------------VPDKRFWWLKIKALAENKDWDELEKFAKS----- 233 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC--------------------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----
Confidence 34444555555566655555555443 45566666666666666666655443221
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038606 355 CMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNL 416 (666)
Q Consensus 355 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 416 (666)
..++.-|..++.+|.+.|+..+|..+...+ + +..-+..|.+.|++.+|.+.
T Consensus 234 -kKsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 234 -KKSPIGYEPFVEACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred -CCCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 123344555566666666666666555441 1 12334455556666555444
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.19 E-value=0.0086 Score=56.95 Aligned_cols=66 Identities=14% Similarity=-0.078 Sum_probs=52.7
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCCh---hhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNN---YSYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
.++..++.++.+|...|++++|+..|+++++.+ |.+. .+|+.++.+|...|++++|...++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677888888888888888888888888876 3444 34888888888888888888888888874
No 223
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.19 E-value=0.013 Score=46.23 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=61.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchH-HHHH
Q 038606 65 NNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY--DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHV-FSIL 141 (666)
Q Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~l 141 (666)
+...+..-+....+.|++++|.+.|+.+..+-+.. ...+...++.+|.+.+++++|+..+++.++.+|.++.+ |...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 44566677778889999999999999998874331 33456678889999999999999999999998876643 3333
Q ss_pred HHHHH
Q 038606 142 LVAFS 146 (666)
Q Consensus 142 ~~~~~ 146 (666)
..++.
T Consensus 89 ~~gL~ 93 (142)
T PF13512_consen 89 MRGLS 93 (142)
T ss_pred HHHHH
Confidence 44333
No 224
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.014 Score=49.28 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=57.3
Q ss_pred ChhhHHHHHHHHHc-----cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHcc----------------CCHHHHHHH
Q 038606 463 DIVCYSAAIGGLID-----IKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKA----------------QRVAEAEDL 521 (666)
Q Consensus 463 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 521 (666)
+..+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++.+-+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44555555555542 355566666666666666667777777776665431 234567888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038606 522 FNEMITKGLIPSVATYNLLINGWCKSGN 549 (666)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (666)
+++|...|+-||..++..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888766553
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.13 E-value=0.061 Score=52.90 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=13.4
Q ss_pred HHHHccCChhHHHHHHHHHHh
Q 038606 542 NGWCKSGNIDQAMLCLSRMLE 562 (666)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~ 562 (666)
.+|.+.|+-.+|..+++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 355566667777777766643
No 226
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.13 E-value=0.014 Score=49.27 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHH
Q 038606 220 QLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELT 257 (666)
Q Consensus 220 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 257 (666)
+-+-|++++++|...|+.||..|+..++..+++.+..-
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 34668889999999999999988888888888776655
No 227
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.08 E-value=0.0016 Score=39.89 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=31.8
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLL 73 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 73 (666)
|.++..+++.|...|++++|.++|+++++.. |.|...+..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHhh
Confidence 4567778888888888888888888888876 66677766654
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.029 Score=50.41 Aligned_cols=153 Identities=14% Similarity=0.033 Sum_probs=81.3
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCC---chHHHHHHHHHHhcCCh
Q 038606 76 LCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH-GWVD---EHVFSILLVAFSKWGEV 151 (666)
Q Consensus 76 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~ 151 (666)
....|+.-+|-..++++++.- +.|-..+.-.=.+++..|+...-...++++... ++.- ..+...+.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 445566666666666666543 235555555555666666666666666666544 2211 11222333345566666
Q ss_pred hhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc---HHHHHHHHHhhhccCChhHHHHHH
Q 038606 152 DKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASD---AAMYDVIIGGLCKNKQLEMALQLY 228 (666)
Q Consensus 152 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~ 228 (666)
++|++.-++..+.+ +.|.....++.+.+-..|++.++.+...+-...--..+ ...|=...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 66666666666655 34555666666666666666666665554322110011 112223344455556677777776
Q ss_pred HH
Q 038606 229 SE 230 (666)
Q Consensus 229 ~~ 230 (666)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.02 E-value=0.25 Score=44.89 Aligned_cols=200 Identities=17% Similarity=0.093 Sum_probs=101.1
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHH--cCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKR--EGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
...+......+...+++..+...+..... .. +.....+......+...+++..+...+.........+ .......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELL--PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhc--cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHH
Confidence 34455566666666666666666666554 22 3444555555666666666666666666665543322 1112222
Q ss_pred HH-HHHhcCChhHHHHHHHHHHHcCC---CCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc
Q 038606 108 LQ-VYCNSGQFDKALSVFNEIIDHGW---VDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 108 ~~-~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (666)
.. .+...|+++.|...+++.....+ .....+......+...++.+.+...+..............+..+...+...
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 22 45566666666666666544332 112223333333455566666666666665543111234455555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 184 SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 184 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
++++.|...+....... +.....+..+...+...+..+.+...+.+...
T Consensus 216 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56666666666655442 11122333333333344455666655555554
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.0066 Score=53.32 Aligned_cols=94 Identities=19% Similarity=0.099 Sum_probs=80.3
Q ss_pred hhHhhhhchHHHHHHHHhhh--hcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCC-CCChhhHHHHHHHHHhcCC
Q 038606 5 LSRARRIAPLRVLAQDVVKS--RCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLC-VPNNYSYNCLLEALCKSCS 81 (666)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 81 (666)
+-..|+...|++.|+.-++. +++.++.++.||..++..+|++++|...|..+.+..+- |.-+.++..|+.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34567899999999888886 45667999999999999999999999999999987632 3345789999999999999
Q ss_pred hhHHHHHHHHHHhcCCC
Q 038606 82 VDLVEMRLKEMQDYGWG 98 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~ 98 (666)
.++|...|+++.+.-|.
T Consensus 231 ~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 231 TDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 99999999999997544
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.00 E-value=0.2 Score=47.36 Aligned_cols=164 Identities=15% Similarity=0.089 Sum_probs=79.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038606 469 AAIGGLIDIKRVDLALELFRDICAHG---CCPDVVAYNIIISGLCK---AQRVAEAEDLFNEMITKGLIPSVATYNLLIN 542 (666)
Q Consensus 469 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 542 (666)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|+.++..+....-.++..++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34444555555555555555554431 11111111222333344 5666666666666444434445555555554
Q ss_pred HHHc---------cCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCC-hh---HHHHHH----HHHHHcCC---C
Q 038606 543 GWCK---------SGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGR-PD---DAIMLW----NEMEEKGC---A 602 (666)
Q Consensus 543 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~----~~~~~~~~---~ 602 (666)
.|.. ....++|...|.+..+.. |+..+--+++..+...|. ++ +..++- ..+.+.|. .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 112666777777766553 333322222222223332 11 112222 11112222 2
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038606 603 PNRITFMALITGLCKCDRPRAALVHFRMMKEKG 635 (666)
Q Consensus 603 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 635 (666)
.+-..+.+++.++.-.|++++|.+.+++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 345555677788888888888888888888653
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.073 Score=47.43 Aligned_cols=125 Identities=10% Similarity=0.076 Sum_probs=89.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
.......|++.+|...|+.+....+.+..+...++.+|...|+.+.|..++..+....-.........-+..+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34456789999999999999998888888889999999999999999999988876532222222223344454555555
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
+...+-.+.-.. +.|...-..+...+...|+.+.|.+.+-.+.++
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555554443 447777777888888999999999887777664
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.98 E-value=0.038 Score=45.35 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=34.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH-----cCCCCCHHH
Q 038606 573 YTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKE-----KGMKPDMFV 642 (666)
Q Consensus 573 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 642 (666)
...++..+...|++++|.++++++.... +-+...|..++.+|...|+..+|.++|+++.+ .|+.|++.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344555555566666666666665542 33455556666666666666666666655432 355565544
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.014 Score=54.24 Aligned_cols=96 Identities=20% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhh
Q 038606 137 VFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLC 216 (666)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (666)
++.-++.++.+.+.+..|++..++.+..+ ++|+...-.-..++...|+++.|+..|+++.+.. |.|-.+-+.++..--
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 56778889999999999999999999987 5688888888899999999999999999999875 445555555555554
Q ss_pred ccCCh-hHHHHHHHHHHhC
Q 038606 217 KNKQL-EMALQLYSEMKGS 234 (666)
Q Consensus 217 ~~g~~-~~a~~~~~~~~~~ 234 (666)
+...+ ++..++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 44444 4557888888763
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.94 E-value=0.0021 Score=45.87 Aligned_cols=65 Identities=17% Similarity=0.118 Sum_probs=48.1
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCC-CC---CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGL-CV---PN-NYSYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
..+|+.++.+|...|++++|+..|+++++... .+ |. ..++..++.++...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678899999999999999999988875410 11 12 34677788888888888888888888765
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.087 Score=45.25 Aligned_cols=194 Identities=9% Similarity=0.041 Sum_probs=92.8
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChh------hHHHHHHHHHhcCChhHHHHHHHHHHh----cCCC
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNY------SYNCLLEALCKSCSVDLVEMRLKEMQD----YGWG 98 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 98 (666)
-.+.|..-+.+|...+++++|...+..+.+-. ..|.. +|...+-..-....+.++..+|+++.. .| .
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~y--EnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-s 106 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGY--ENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-S 106 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-C
Confidence 45678889999999999999999998888554 22222 222333333444456666666665533 22 1
Q ss_pred CCcccH--HHHHHHHHhcCChhHHHHHHHHHHHc---CCCC---chHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----
Q 038606 99 YDKYTL--TPLLQVYCNSGQFDKALSVFNEIIDH---GWVD---EHVFSILLVAFSKWGEVDKACELIERMDDCN----- 165 (666)
Q Consensus 99 ~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 165 (666)
|++-.. -.... ...+.+++.|+++|.+.... +..+ ...+....+.+.+...+.+|-..+.+-....
T Consensus 107 pdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 107 PDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred cchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 222111 11111 12445566666666554332 1111 1223344445555555555544443322110
Q ss_pred CCcchhhHHHHHHhhhccCCHHHHHHHHHHHHh---CCCCccHHHHHHHHHhhhccCChhHHHHH
Q 038606 166 IRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTK---SGFASDAAMYDVIIGGLCKNKQLEMALQL 227 (666)
Q Consensus 166 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 227 (666)
....-..+...+-.+.-.+++..|.+.+..--. ..-+.|..+...|+.+| ..|+.+++..+
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 000112233333444445566666666655222 22233445555555555 34555544443
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.93 E-value=0.023 Score=43.15 Aligned_cols=94 Identities=18% Similarity=0.087 Sum_probs=48.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc---cHHHHHHHHH
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKY---TLTPLLQVYC 112 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~ 112 (666)
-+.++...|+.+.|++.|.+.+..- |.+..+|+.-.+++.-+|+.++|.+-+++.++...+.... .+..-...|.
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~--P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLA--PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhc--ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3445556666666666666666554 5556666666666666666666666666665542211111 1111223344
Q ss_pred hcCChhHHHHHHHHHHHcC
Q 038606 113 NSGQFDKALSVFNEIIDHG 131 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~ 131 (666)
..|+-+.|+.-|+.....|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 4455555555555444443
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.92 E-value=0.5 Score=46.73 Aligned_cols=131 Identities=10% Similarity=0.013 Sum_probs=89.8
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQV 110 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (666)
+.+..++.--....+.+.+...++.++... |--..-|......-.+.|..+.+.++|++.+.. ++.....|......
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAF 122 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 334445544444555577777888888665 333345666777778888899999999988874 55566677766654
Q ss_pred HH-hcCChhHHHHHHHHHHHcC---CCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 111 YC-NSGQFDKALSVFNEIIDHG---WVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 111 ~~-~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
+. ..|+.+.....|+.+...- ......|...+..-..++++....++++++++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 3477778888888776642 234456777777777788888888888888874
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.25 Score=43.11 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=102.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH-----HH
Q 038606 466 CYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYN-----LL 540 (666)
Q Consensus 466 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-----~l 540 (666)
..+.++.++...|.+.-....+.+.++...+.++.....+++.-.+.|+.+.|...|++..+..-+.+..+.+ ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4566777777888999999999999887767788888889999999999999999999877653333333333 33
Q ss_pred HHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 038606 541 INGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFM 609 (666)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 609 (666)
...|.-++++.+|...+.++...++ .++...|.-.-+..-.|+..+|++.++.|.+. .|.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 3455667789999999988888766 45555555444555568999999999999885 34443333
No 240
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.86 E-value=0.064 Score=45.07 Aligned_cols=182 Identities=18% Similarity=0.095 Sum_probs=118.5
Q ss_pred HhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038606 7 RARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVE 86 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (666)
..|-|.-|+-=+.+.+.-. |--|++++.+.-.+...|+++.|.+.|+...+.+ |....+...-+-++.-.|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhH
Confidence 4455666666665555544 3368999999999999999999999999999988 666777766666777889999999
Q ss_pred HHHHHHHhcCCCCCcc--cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH-hcCChhhHHHHHHHHhh
Q 038606 87 MRLKEMQDYGWGYDKY--TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS-KWGEVDKACELIERMDD 163 (666)
Q Consensus 87 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 163 (666)
+-+.+.-+.++. |+. .|.-+. -+.-++.+|..-+.+-.... +..-|.+.+..+. ..=..+ .+++++..
T Consensus 154 ~d~~~fYQ~D~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yLgkiS~e---~l~~~~~a 224 (297)
T COG4785 154 DDLLAFYQDDPN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYLGKISEE---TLMERLKA 224 (297)
T ss_pred HHHHHHHhcCCC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHHhhccHH---HHHHHHHh
Confidence 988888776544 332 222222 23457777777655443332 4444554444332 221222 22333332
Q ss_pred CCC------CcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCC
Q 038606 164 CNI------RLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSG 200 (666)
Q Consensus 164 ~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 200 (666)
..- ..=+.||--+...+...|+.++|..+|.-....+
T Consensus 225 ~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 225 DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 110 0113456677888889999999999999887543
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.79 E-value=0.0031 Score=38.63 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=23.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHH
Q 038606 103 TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILL 142 (666)
Q Consensus 103 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 142 (666)
++..+..+|...|++++|+++|+++.+..|.++.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3455556666666666666666666666666655555443
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.78 E-value=0.0094 Score=48.96 Aligned_cols=55 Identities=20% Similarity=0.113 Sum_probs=32.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 92 (666)
++..+...|++++|..+...++..+ |-+...|..++.+|...|+...|...|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4445555666666666666666665 455666666666666666666666666555
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.76 E-value=0.46 Score=43.98 Aligned_cols=228 Identities=12% Similarity=0.047 Sum_probs=137.6
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcCCCcchH-------HHHHHHHhccC-ChHHHHHHHHHHHHc----C---CCCCCh--
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCFMSPGAL-------GFLIRCLGSVG-LVEEANMLFDQVKRE----G---LCVPNN-- 66 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~-~~~~A~~~~~~~~~~----~---~~~~~~-- 66 (666)
+..+.|+.+.|+.++..+...-...+|+.. ...+....+.+ +++.|..+++++.+. . ...|+.
T Consensus 2 ~A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 2 LAWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred cchhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 346789999999999888886644555544 34555566677 999999998887655 1 112232
Q ss_pred ---hhHHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHH
Q 038606 67 ---YSYNCLLEALCKSCSVD---LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSI 140 (666)
Q Consensus 67 ---~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 140 (666)
.++..++.+|...+.++ +|..+.+.+.... +..+.++..-+.++.+.++.+.+.+++.++...-......+..
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~ 160 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHH
Confidence 34666778888888765 4555666665443 3245556566777777899999999999998875434455555
Q ss_pred HHHHHHh--cCChhhHHHHHHHHhhCCCCcchh-hHH-HHHH-hhh--ccC------CHHHHHHHHHHHHh-CCCCccHH
Q 038606 141 LLVAFSK--WGEVDKACELIERMDDCNIRLNEK-TFC-VLIH-GFV--KKS------RVDKALQLFDKMTK-SGFASDAA 206 (666)
Q Consensus 141 l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~-~~~-~l~~-~~~--~~~------~~~~A~~~~~~~~~-~~~~~~~~ 206 (666)
.+..+.. ......|...+..++...+.+... ... .++. .+. ..+ ..+...++++.+.+ .+.+.+..
T Consensus 161 ~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 161 ILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 5554422 233456777777766554444442 111 1111 111 111 14455555654333 22233333
Q ss_pred HHHHH-------HHhhhccCChhHHHHHHHHHH
Q 038606 207 MYDVI-------IGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 207 ~~~~l-------~~~~~~~g~~~~a~~~~~~~~ 232 (666)
+-..+ +..+.+.++++.|.++|+-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 32222 344567899999999998654
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=96.72 E-value=0.073 Score=51.02 Aligned_cols=147 Identities=9% Similarity=-0.026 Sum_probs=105.8
Q ss_pred hhchHHHHHHHHhhh--hcCCCcchHHHHHHHHhcc---------CChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHh
Q 038606 10 RIAPLRVLAQDVVKS--RCFMSPGALGFLIRCLGSV---------GLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCK 78 (666)
Q Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (666)
....|..++.+.++. ..|.....|..++-++... ....+|.++-+.+.+.+ +.|+.+...++.+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 345677777777732 2333466677666665543 34568888999999998 7899999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch--HHHHHHHHHHhcCChhhHHH
Q 038606 79 SCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEH--VFSILLVAFSKWGEVDKACE 156 (666)
Q Consensus 79 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~ 156 (666)
.|+++.|..+|+++...++. ...+|.......+-.|+.++|.+.+++..+.+|.... ..-..+..|+.. ..+.|+.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred hcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 99999999999999997654 5566666666677889999999999999999875432 222233345444 4666666
Q ss_pred HHHH
Q 038606 157 LIER 160 (666)
Q Consensus 157 ~~~~ 160 (666)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6543
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.85 Score=46.35 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=64.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038606 537 YNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLC 616 (666)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 616 (666)
.+--+.-+..-|+..+|.++-.+.. -||...|..-+.+++..+++++-+++-+..+ ++.-|.-...+|.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 3334445556677777766655543 4677777777777777777766555544443 2444555667777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 038606 617 KCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELNPPLAFEV 662 (666)
Q Consensus 617 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 662 (666)
+.|+.++|.+++-+.. |.+ ....+|.+.|++.+|.+.
T Consensus 756 ~~~n~~EA~KYiprv~--~l~-------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVG--GLQ-------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccC--ChH-------HHHHHHHHhccHHHHHHH
Confidence 7777777777766543 111 455666677777666543
No 246
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.69 E-value=0.55 Score=44.00 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=35.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCH
Q 038606 436 IKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRV 515 (666)
Q Consensus 436 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 515 (666)
+.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++... ..++..|..++.+|.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333344444444444433321 24444555555555555555544433211 11234455555555555555
Q ss_pred HHHHHHHHH
Q 038606 516 AEAEDLFNE 524 (666)
Q Consensus 516 ~~a~~~~~~ 524 (666)
.+|..+..+
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555555444
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.69 E-value=0.63 Score=46.28 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038606 323 NTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFR 402 (666)
Q Consensus 323 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 402 (666)
+..+...+...+.+...+..|-++|..+-.. ..++......++|.+|..+-+...+. .||. |....+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHH
Confidence 3444555555555666677777777766431 23555667777788877777665543 3332 223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038606 403 CLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQE 458 (666)
Q Consensus 403 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 458 (666)
-++...++++|.+ +|.+.|+..+|.++++++...
T Consensus 813 wLAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 813 WLAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HhhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhhh
Confidence 3333333433332 344556666666666666543
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.68 E-value=0.043 Score=52.40 Aligned_cols=67 Identities=9% Similarity=-0.083 Sum_probs=50.4
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK---YTLTPLLQVYCNSGQFDKALSVFNEIIDH 130 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 130 (666)
|.+...++.++.+|.+.|++++|...|++.++.++. +. .+|..+..+|.+.|++++|++.++++...
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677888888888888888888888888876544 22 34777778888888888888888887775
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.67 E-value=0.051 Score=41.37 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=40.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhh---HHHHHHhhhccCCHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKT---FCVLIHGFVKKSRVDK 188 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 188 (666)
...|+++.|++.|.+.+..-|..+.+|+.-..++.-.|+.++|.+-+++.++..-...... |..-...|-..|+.+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 3445555555555555555444555555555555555555555555555444321111111 1122223444455555
Q ss_pred HHHHHHHHHhCC
Q 038606 189 ALQLFDKMTKSG 200 (666)
Q Consensus 189 A~~~~~~~~~~~ 200 (666)
|..=|+..-+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 555555444433
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.35 Score=41.78 Aligned_cols=210 Identities=17% Similarity=0.121 Sum_probs=102.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHH
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVD 187 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 187 (666)
..+|...+++++|...+.++.+..-.+...|. -. ..++.|..+.+++... +--+..++.....|..+|.++
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcc
Confidence 34566667777777766666543222221111 11 2234455555555443 112334555566677777777
Q ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhC
Q 038606 188 KALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDR 267 (666)
Q Consensus 188 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 267 (666)
.|-..+++.-+. ..+-+++.|+++|++....- ..+..+- .++
T Consensus 109 tAAmaleKAak~----------------lenv~Pd~AlqlYqralavv-e~~dr~~--------------ma~------- 150 (308)
T KOG1585|consen 109 TAAMALEKAAKA----------------LENVKPDDALQLYQRALAVV-EEDDRDQ--------------MAF------- 150 (308)
T ss_pred hHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHH-hccchHH--------------HHH-------
Confidence 777666664431 12345556666665554310 1111000 000
Q ss_pred CCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 038606 268 DVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLF 347 (666)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 347 (666)
..+....+.+++...+++|-..+.+-.... ..-...+.--..+...|-.+....++..|...+
T Consensus 151 ------el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~-----------~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 151 ------ELYGKCSRVLVRLEKFTEAATAFLKEGVAA-----------DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred ------HHHHHhhhHhhhhHHhhHHHHHHHHhhhHH-----------HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 223334455555566666555554322100 000001222234555666677777888888888
Q ss_pred HHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 038606 348 REMTQIG---CMQNVFLYNNLIDGLCNSNRLEESYELL 382 (666)
Q Consensus 348 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 382 (666)
+..-+.+ -+.+..+...|+.+| ..|+.+++..++
T Consensus 214 r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 214 RDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred cchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 7744332 234556666677665 345666555444
No 251
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.0079 Score=42.84 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCChhhHHHHHhh
Q 038606 606 ITFMALITGLCKCDRPRAALVHFRMMKEK--GMK---PD-MFVFVALISAFLSELNPPLAFEVLKE 665 (666)
Q Consensus 606 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 665 (666)
.+++.+...|...|++++|+..+++..+. .+. |+ ..++..++.+|...|++++|.+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556666666666666666666665542 111 11 45666677777777777777766653
No 252
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.31 Score=44.13 Aligned_cols=164 Identities=11% Similarity=0.031 Sum_probs=114.7
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCcccHH--HH
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY-GWGYDKYTLT--PL 107 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--~l 107 (666)
+-...-+..+.-+|+..+|...|+++++.. |.|.-++...=.++..+|+.+.-...++++... +......+|. .+
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence 444445556667888899999999999877 778888888888899999999888888888754 2221112222 22
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc---chhhHHHHHHhhhccC
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRL---NEKTFCVLIHGFVKKS 184 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 184 (666)
.-.+..+|-+++|.+.-++..+.++.|..+-.++...+...|+..++.+...+-...--.. -...|=...-.+...+
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a 261 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA 261 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc
Confidence 3344577999999999999999888888888888888888999999888766554321000 0111222333456678
Q ss_pred CHHHHHHHHHHH
Q 038606 185 RVDKALQLFDKM 196 (666)
Q Consensus 185 ~~~~A~~~~~~~ 196 (666)
.++.|+++|++-
T Consensus 262 eye~aleIyD~e 273 (491)
T KOG2610|consen 262 EYEKALEIYDRE 273 (491)
T ss_pred chhHHHHHHHHH
Confidence 899999999863
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.25 E-value=0.12 Score=47.22 Aligned_cols=225 Identities=15% Similarity=0.061 Sum_probs=140.1
Q ss_pred hhhchHHHHHHHHhhhhcC-C-CcchHHHHHHHHhccCChHHHHHHHHHHH----HcCCCCCChhhHHHHHHHHHhcCCh
Q 038606 9 RRIAPLRVLAQDVVKSRCF-M-SPGALGFLIRCLGSVGLVEEANMLFDQVK----REGLCVPNNYSYNCLLEALCKSCSV 82 (666)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (666)
..-..+++.|...+.+-.. . .-.+|..+..+....|.+++++..--... +.....---++|..+.+++-+..++
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f 99 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEF 99 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666555554211 1 23456778888888999888876543222 2110001234677777777777777
Q ss_pred hHHHHHHHHHHhcC-CCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CC----chHHHHHHHHHHhcCChh
Q 038606 83 DLVEMRLKEMQDYG-WGY---DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW--VD----EHVFSILLVAFSKWGEVD 152 (666)
Q Consensus 83 ~~A~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~ 152 (666)
.+++.+-..-.... ..+ .......+..++...+.++++++-|+.+.+... .| -.++..+...+.+..+++
T Consensus 100 ~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~ 179 (518)
T KOG1941|consen 100 HKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYE 179 (518)
T ss_pred hhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhh
Confidence 77777766555431 111 123445567788888899999999998865322 22 357889999999999999
Q ss_pred hHHHHHHHHhhC--CCCc-ch-hhH-----HHHHHhhhccCCHHHHHHHHHHHHhCCC-CccHH----HHHHHHHhhhcc
Q 038606 153 KACELIERMDDC--NIRL-NE-KTF-----CVLIHGFVKKSRVDKALQLFDKMTKSGF-ASDAA----MYDVIIGGLCKN 218 (666)
Q Consensus 153 ~A~~~~~~~~~~--~~~~-~~-~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~ 218 (666)
+|.-+..++.+. ++.. |. ..| ..+.-++-..|.+..|.+..++..+..+ ..|.. ....+...|...
T Consensus 180 Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~ 259 (518)
T KOG1941|consen 180 KALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSR 259 (518)
T ss_pred HHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhc
Confidence 998777666542 1111 11 112 2344456678888888888887654211 22333 345677888889
Q ss_pred CChhHHHHHHHHHHh
Q 038606 219 KQLEMALQLYSEMKG 233 (666)
Q Consensus 219 g~~~~a~~~~~~~~~ 233 (666)
|+.|.|+.-|+....
T Consensus 260 gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 260 GDLERAFRRYEQAMG 274 (518)
T ss_pred ccHhHHHHHHHHHHH
Confidence 999998888877653
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=1.8 Score=44.83 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=62.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCch----HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWVDEH----VFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVK 182 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 182 (666)
-+....+...++-|+.+-+. .+ .++. +....+..+.+.|++++|...|-+.+.. +.| ..++.-|..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~---~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS---QH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh---cC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34445555666666554332 11 1222 2334444556667777777666555543 122 223444555
Q ss_pred cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 183 KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 183 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
..+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.++..+..+...
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5555666666666666663 444455566777777777766666555544
No 255
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.20 E-value=2.1 Score=45.05 Aligned_cols=186 Identities=12% Similarity=0.101 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcCCCCCCh--hhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCcc-----cHHHHHHHHHhcCChh
Q 038606 47 EEANMLFDQVKREGLCVPNN--YSYNCLLEALC-KSCSVDLVEMRLKEMQDYGWGYDKY-----TLTPLLQVYCNSGQFD 118 (666)
Q Consensus 47 ~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 118 (666)
..|++.++.+.+...++|.. .++..++..+. ...+++.|+..+++.....-.++-. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45778888888654334443 35667788776 7889999999999886643332211 2234567777777666
Q ss_pred HHHHHHHHHHHcCC---CCch--HHHHH-HHHHHhcCChhhHHHHHHHHhhCC---CCcchhhHHHHHHhh--hccCCHH
Q 038606 119 KALSVFNEIIDHGW---VDEH--VFSIL-LVAFSKWGEVDKACELIERMDDCN---IRLNEKTFCVLIHGF--VKKSRVD 187 (666)
Q Consensus 119 ~A~~~~~~~~~~~~---~~~~--~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~ 187 (666)
|...+++..+.-. .... .+..+ +..+...++...|.+.++.+.... ..+...++..++.+. .+.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 9998888765422 1222 22222 223333489999999998876542 234444444454443 3566677
Q ss_pred HHHHHHHHHHhCC---------CCccHHHHHHHHHhh--hccCChhHHHHHHHHHHh
Q 038606 188 KALQLFDKMTKSG---------FASDAAMYDVIIGGL--CKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 188 ~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 233 (666)
++.+.++.+.... ..|-..+|..+++.+ ...|++..+.+.++++..
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7877777763311 134556677666554 467887788887777654
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.32 Score=39.49 Aligned_cols=128 Identities=10% Similarity=0.105 Sum_probs=79.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCc--hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchh-hHH--HHHHhhhccCCH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDE--HVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEK-TFC--VLIHGFVKKSRV 186 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~~~~ 186 (666)
.+.+..++|+..|..+.+.+.-.- -+...........|+...|+..|+++-.....|... -.. .-.-.+..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 456777777777777777654322 233444556677777888888887776543333222 111 112234577788
Q ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCC
Q 038606 187 DKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPD 239 (666)
Q Consensus 187 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 239 (666)
+....-.+.+...+.+--...-..|.-+..+.|++.+|.++|..+......|.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 87777777766555344444555666677788888888888888876544454
No 257
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.14 E-value=0.098 Score=47.74 Aligned_cols=233 Identities=15% Similarity=0.050 Sum_probs=143.7
Q ss_pred HhccCChHHHHHHHHHHHHcCCC-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC--CC---CCcccHHHHHHHHHh
Q 038606 40 LGSVGLVEEANMLFDQVKREGLC-VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG--WG---YDKYTLTPLLQVYCN 113 (666)
Q Consensus 40 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~ 113 (666)
+....+.++|+..|.+.++.-.. ...-.++-.+..+..+.|.++++...--...+.- .+ .--..+..+.+.+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999888765310 0112345556778888888888766543222210 11 112344555566666
Q ss_pred cCChhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHhcCChhhHHHHHHHHhhCC-----CCcchhhHHHHHHhhhcc
Q 038606 114 SGQFDKALSVFNEIIDHGWV-----DEHVFSILLVAFSKWGEVDKACELIERMDDCN-----IRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 183 (666)
..++.+++.+-..-...... .......+..++...+.++++++.|+.+...- ......++..|-..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66777777765554433221 22456678888999999999999999987531 122345677888889999
Q ss_pred CCHHHHHHHHHHHHh----CCCCccHHHH-----HHHHHhhhccCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHhhhcc
Q 038606 184 SRVDKALQLFDKMTK----SGFASDAAMY-----DVIIGGLCKNKQLEMALQLYSEMKGSGIT-PDFEILSKLITSCSDE 253 (666)
Q Consensus 184 ~~~~~A~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~ 253 (666)
.++++|.-+..+..+ .++..-..-| ..|..++...|....|.+.-++..+..+. -|..++.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a--------- 246 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA--------- 246 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH---------
Confidence 999998876665443 2222212223 23455677788888888888776553221 2322222
Q ss_pred CcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038606 254 GELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIK 301 (666)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 301 (666)
.....+.+.|-..|+.+.|..-|++...
T Consensus 247 --------------------rc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 247 --------------------RCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred --------------------HHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 3445667788888888888887776553
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.10 E-value=0.29 Score=48.99 Aligned_cols=85 Identities=14% Similarity=0.112 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC---CCcchhhHHHHHHhhhccCCHHHHHH
Q 038606 115 GQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN---IRLNEKTFCVLIHGFVKKSRVDKALQ 191 (666)
Q Consensus 115 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~ 191 (666)
.+.+.|.++++.+....|...--...-++.+...|++++|++.|++..... .+.....+--+.-.+.-.+++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344556666666666555433334444555566666666666666544311 01111222223333445566666666
Q ss_pred HHHHHHhC
Q 038606 192 LFDKMTKS 199 (666)
Q Consensus 192 ~~~~~~~~ 199 (666)
.|..+.+.
T Consensus 327 ~f~~L~~~ 334 (468)
T PF10300_consen 327 YFLRLLKE 334 (468)
T ss_pred HHHHHHhc
Confidence 66666654
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.06 E-value=0.11 Score=40.63 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHH
Q 038606 499 VVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLID 578 (666)
Q Consensus 499 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (666)
..++..++.++++.|+.+....+++..-. +.++... ..+. .....+..|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 34556666666666666666666654431 2211100 0000 2233344577777777777
Q ss_pred HHHHcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 038606 579 GLCIAGRPDDAIMLWNEMEE-KGCAPNRITFMALITGL 615 (666)
Q Consensus 579 ~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 615 (666)
+|+..|++..|.++.+...+ .+++.+...|..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777777777655 45566677777766433
No 260
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.04 E-value=0.15 Score=39.95 Aligned_cols=101 Identities=12% Similarity=0.025 Sum_probs=74.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038606 463 DIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLIN 542 (666)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 542 (666)
|..++..++.++++.|+.+....+++..-.. ..+... ..+. --......|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567889999999999999999998776533 222110 0011 1122356789999999999
Q ss_pred HHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHc
Q 038606 543 GWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIA 583 (666)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (666)
+|+..|++..|+++++...+..+...+...|..|+.-....
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998888777778888888755443
No 261
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.03 E-value=0.16 Score=49.96 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=53.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQ 191 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 191 (666)
.-.|+++.+.+..+.-.-....++.-...++..+.+.|..+.|+++...-. .-.+...+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHH
Confidence 345666665555431110111234446666666777777777766542221 12333456677777766
Q ss_pred HHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHH
Q 038606 192 LFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
+.+. .++...|..|.....++|+++-|.+.|.+..
T Consensus 340 ~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 340 IAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 5544 2355677777777777777777777776653
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.96 E-value=0.72 Score=46.27 Aligned_cols=168 Identities=16% Similarity=0.060 Sum_probs=90.8
Q ss_pred HHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHH---
Q 038606 208 YDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILV--- 284 (666)
Q Consensus 208 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 284 (666)
+..++...+-.||.+.+++++.+..+.+---.+..-..+ ..|...+..++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~L---------------------------L~y~~~~~~~~~~~ 243 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVL---------------------------LWYHLVVPSFLGID 243 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHH---------------------------HHHHHHHHHHcCCc
Confidence 445566667788888888888876653211111111111 12222332222
Q ss_pred -hcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CCCHH
Q 038606 285 -SNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG--C-MQNVF 360 (666)
Q Consensus 285 -~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~ 360 (666)
.....+.|.++++.+.... |.+..-.-.-.+.+...|+++.|++.|+...... . .....
T Consensus 244 ~~~~~~~~a~~lL~~~~~~y-----------------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 244 GEDVPLEEAEELLEEMLKRY-----------------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred ccCCCHHHHHHHHHHHHHhC-----------------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 2456777888888887764 3333333444567777888888888888654311 0 11122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH-------HHHHHHHHHH
Q 038606 361 LYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRC-LCRRQDV-------VGALNLVRKM 420 (666)
Q Consensus 361 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~ 420 (666)
.+--+.-.+.-.++|++|.+.|..+.+.+ ..+..+|..+..+ +...++. ++|.++|.++
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 33344555666777777777777777653 3344444433332 2334444 4444444443
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.92 E-value=1.8 Score=42.11 Aligned_cols=149 Identities=11% Similarity=0.049 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHH--Hh
Q 038606 70 NCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAF--SK 147 (666)
Q Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~ 147 (666)
..++....+..+.+.-.+...++++.++. ....|..| +--......+|.++|++..+.+... +.... ..
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pd-CAdAYILL--AEEeA~Ti~Eae~l~rqAvkAgE~~------lg~s~~~~~ 242 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPD-CADAYILL--AEEEASTIVEAEELLRQAVKAGEAS------LGKSQFLQH 242 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhh-hhHHHhhc--ccccccCHHHHHHHHHHHHHHHHHh------hchhhhhhc
Confidence 34566667777888877888888775322 22333222 2223456788888888877653210 00000 01
Q ss_pred cCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCC-ccHHHHHHHHHhhhccCChhHHHH
Q 038606 148 WGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFA-SDAAMYDVIIGGLCKNKQLEMALQ 226 (666)
Q Consensus 148 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~ 226 (666)
.|. ..+....++..+-..+-..+...+-+.|+.++|.+.+.++.+.... ........|+.++...+.+.++..
T Consensus 243 ~g~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGH------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccc------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 111 1111222222222333344666666788888888888888764311 234466678888888888888888
Q ss_pred HHHHHHh
Q 038606 227 LYSEMKG 233 (666)
Q Consensus 227 ~~~~~~~ 233 (666)
++.+-..
T Consensus 317 lL~kYdD 323 (539)
T PF04184_consen 317 LLAKYDD 323 (539)
T ss_pred HHHHhcc
Confidence 8887654
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.88 E-value=0.27 Score=48.35 Aligned_cols=155 Identities=17% Similarity=0.251 Sum_probs=87.5
Q ss_pred hccCCHHHHHHHHHH-HHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHH
Q 038606 181 VKKSRVDKALQLFDK-MTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLL 259 (666)
Q Consensus 181 ~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 259 (666)
.-.++++++.++.+. -.-..+| ....+.++..+-+.|..+.|+++-.+-..
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------------------- 323 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------------------- 323 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------------------------
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH--------------------------
Confidence 346677776666541 1111111 33456667777777777777765433211
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCC
Q 038606 260 VKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGK 339 (666)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 339 (666)
-.....+.|+++.|.++.+. .++...|..|.......|+
T Consensus 324 -------------------rFeLAl~lg~L~~A~~~a~~----------------------~~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 324 -------------------RFELALQLGNLDIALEIAKE----------------------LDDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp -------------------HHHHHHHCT-HHHHHHHCCC----------------------CSTHHHHHHHHHHHHHTTB
T ss_pred -------------------HhHHHHhcCCHHHHHHHHHh----------------------cCcHHHHHHHHHHHHHcCC
Confidence 23345567777777766543 4566678888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038606 340 LDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRK 419 (666)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 419 (666)
++-|++.|.+... |..|+-.|...|+.+...++.+.....| -++..+.++.-.|+.++..+++.+
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888777654 4556666777777777777766666554 145555556666777776666544
No 265
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.87 E-value=0.0093 Score=33.88 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=23.8
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038606 53 FDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVE 86 (666)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (666)
|+++++.+ |.|..+|+.++..|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666 677778888888888888877775
No 266
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=2.6 Score=43.09 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=71.0
Q ss_pred hhccCCHHHHHHHHHHHH--------hCCCCccHHHHHH-----HHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 038606 180 FVKKSRVDKALQLFDKMT--------KSGFASDAAMYDV-----IIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKL 246 (666)
Q Consensus 180 ~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (666)
+.+..++++-..+...+. ..|++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence 344555665555544432 3466666665554 4566667788888888877765422222 5667777
Q ss_pred HHhhhccCcHH--HHHHHHHhhCCC-CCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 038606 247 ITSCSDEGELT--LLVKEIWEDRDV-NTMTLLCNSIMRILVSNGSIDQAYNLLQA 298 (666)
Q Consensus 247 l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 298 (666)
...+.+..+.. .+++.+.+..+. -.....+..+.+.-...|+++-|..+++.
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 66666553322 444444444333 23346677778878888988888888765
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.43 Score=38.76 Aligned_cols=133 Identities=14% Similarity=0.131 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch----HHHH
Q 038606 66 NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKY-TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEH----VFSI 140 (666)
Q Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~ 140 (666)
...|..-++ +.+.+..++|...|..+.+.|...=+. ..........+.|+...|...|+++-...+.+.. +...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334433333 345666788888888887776552222 1222334456678888888888887765543221 1222
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhC
Q 038606 141 LLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKS 199 (666)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 199 (666)
-...+...|.+++.....+-+...+-+-....-..|.-+-.+.|++..|...|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 33356677888888777777766544444455566666667888888888888887764
No 268
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.79 E-value=0.64 Score=35.85 Aligned_cols=139 Identities=18% Similarity=0.241 Sum_probs=79.8
Q ss_pred ccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHH
Q 038606 476 DIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAML 555 (666)
Q Consensus 476 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 555 (666)
-.|.+++..++..+.... .+..-+|.++--....-+-+-..++++.+-+ ..|. ..+|+......
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 357777777777777664 2455556555444443333333333333322 1222 23455555555
Q ss_pred HHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038606 556 CLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKG 635 (666)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 635 (666)
.+-.+ ..+.......+......|+-+.-.++++.+... -.+++..+..+..+|.+.|+..++-+++.++-+.|
T Consensus 78 C~~~~------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKR------NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHT------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 54433 133445556677788888888888888888753 36788888899999999999999999999999888
Q ss_pred CC
Q 038606 636 MK 637 (666)
Q Consensus 636 ~~ 637 (666)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 53
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.72 E-value=2.2 Score=41.52 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=34.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038606 503 NIIISGLCKAQRVAEAEDLFNEMITKGLIP-SVATYNLLINGWCKSGNIDQAMLCLSRML 561 (666)
Q Consensus 503 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (666)
..+..++-+.|+.++|.+.+.++.+..... ...+...|+.++...+.+.++..++.+..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344455556666777777776666542111 22345556666666666766666666653
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.31 E-value=0.022 Score=32.34 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=21.9
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHhcCChhhHH
Q 038606 124 FNEIIDHGWVDEHVFSILLVAFSKWGEVDKAC 155 (666)
Q Consensus 124 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (666)
|+++++.+|.++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666777777777777777777777664
No 271
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.30 E-value=2.1 Score=38.58 Aligned_cols=223 Identities=18% Similarity=0.089 Sum_probs=141.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHccCChHHHH
Q 038606 407 RQDVVGALNLVRKMRVQGHEP-WVKHNTLLIKELCKHGKAMEAFRFLTDMVQE-GFLPDIVCYSAAIGGLIDIKRVDLAL 484 (666)
Q Consensus 407 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 484 (666)
.+....+...+.......... ...........+...+....+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355556666666655543221 2455666677777888888888877777652 22344555666666777777888888
Q ss_pred HHHHHHHhcCCCccHHHHHHHHH-HHHccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038606 485 ELFRDICAHGCCPDVVAYNIIIS-GLCKAQRVAEAEDLFNEMITKGL--IPSVATYNLLINGWCKSGNIDQAMLCLSRML 561 (666)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 561 (666)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877643222 122222223 57778888888888888755311 0123334444444667778888888888887
Q ss_pred hcCCCCC-CHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038606 562 EKESGSP-DVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPN-RITFMALITGLCKCDRPRAALVHFRMMKEK 634 (666)
Q Consensus 562 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 634 (666)
...+ . ....+..+...+...++++.|...+...... .|+ ...+..+...+...+.++++...+.+..+.
T Consensus 195 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNP--DDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhCc--ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7654 2 3556777777777888888888888888764 333 444445555555666788888888877754
No 272
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.08 E-value=0.14 Score=46.25 Aligned_cols=57 Identities=16% Similarity=-0.153 Sum_probs=30.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 36 LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
-..-|+++|++++|+.+|......+ |-|+.++..-..+|.+...|..|..-.+.++.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555555555555555555544 33555555555555555555555554444443
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.05 E-value=2.3 Score=37.59 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=7.4
Q ss_pred HHccCChhHHHHHHHHHHh
Q 038606 544 WCKSGNIDQAMLCLSRMLE 562 (666)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~~ 562 (666)
|.+.|.+-.|..-++.+.+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhcChHHHHHHHHHHHh
Confidence 3333333333333333333
No 274
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.04 E-value=0.99 Score=42.75 Aligned_cols=108 Identities=11% Similarity=-0.057 Sum_probs=73.8
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHhcCC------------hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhH
Q 038606 52 LFDQVKREGLCVPNNYSYNCLLEALCKSCS------------VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDK 119 (666)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (666)
-|++.++.+ |.|..+|..++...-..-. .+.-..+|+++++.++ .+...+..++..+.+..+.++
T Consensus 7 el~~~v~~~--P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~ 83 (321)
T PF08424_consen 7 ELNRRVREN--PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEK 83 (321)
T ss_pred HHHHHHHhC--cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHH
Confidence 345555555 6788888888865433321 4556777888888755 366777778888888888888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHh---cCChhhHHHHHHHHh
Q 038606 120 ALSVFNEIIDHGWVDEHVFSILLVAFSK---WGEVDKACELIERMD 162 (666)
Q Consensus 120 A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 162 (666)
..+.++++...+|.+...|...+..... .-.+.....+|.+.+
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888888888887777777777765444 234555555555544
No 275
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.91 E-value=1.7 Score=35.26 Aligned_cols=42 Identities=5% Similarity=0.211 Sum_probs=20.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
.++..+...+.+......++.+...++.++...+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 444444444555555555555554444444444445554443
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.79 E-value=0.26 Score=44.46 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=31.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
+..++..+...|+++.+...++++.+.+ |-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3344555555555555555555555554 44555555555555555555555555555433
No 277
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.75 E-value=6.5 Score=41.32 Aligned_cols=391 Identities=9% Similarity=-0.039 Sum_probs=186.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK 147 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (666)
.....+..+.+.+++......+.. ++.+.........+....|+.++|......+-..+...+..+..+...+.+
T Consensus 101 Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~ 175 (644)
T PRK11619 101 LQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQ 175 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHH
Confidence 333344455566666665552211 233555556667777788888878777777766666667778888877776
Q ss_pred cCChhhH--HHHHHHHhhCCCCcchhhHHHHHHhhhc------------cCCHHHHHHHHHHHHhCCCCccHHHHHHHHH
Q 038606 148 WGEVDKA--CELIERMDDCNIRLNEKTFCVLIHGFVK------------KSRVDKALQLFDKMTKSGFASDAAMYDVIIG 213 (666)
Q Consensus 148 ~g~~~~A--~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 213 (666)
.|..... .+-++.+...+ +...-..++..+.. ..+...+...+.. ++++...-..++.
T Consensus 176 ~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~ 247 (644)
T PRK11619 176 SGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAV 247 (644)
T ss_pred cCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHH
Confidence 6654432 22222233322 22222222222110 0111111111111 1222211111111
Q ss_pred hh--hccCChhHHHHHHHHHHhC-CCCCCHH--HHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCC
Q 038606 214 GL--CKNKQLEMALQLYSEMKGS-GITPDFE--ILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGS 288 (666)
Q Consensus 214 ~~--~~~g~~~~a~~~~~~~~~~-~~~~~~~--~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (666)
++ ....+.+.|..++...... ++.++.. +...+.......+....+............+.....--++.-...++
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~d 327 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGD 327 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccC
Confidence 11 2345668888888877443 2322221 11122111112210122222222222222334445555666668889
Q ss_pred HHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038606 289 IDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDG 368 (666)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 368 (666)
++.+...+..|.... .....-..=+.+++...|+.++|...|+.+.. .. +|..++..
T Consensus 328 w~~~~~~i~~L~~~~-----------------~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa 384 (644)
T PRK11619 328 RRGLNTWLARLPMEA-----------------KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA 384 (644)
T ss_pred HHHHHHHHHhcCHhh-----------------ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH
Confidence 988888888875543 33344445567777778999999999999743 12 23322221
Q ss_pred HHhcCChhHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 038606 369 LCNSNRLEES-YELLREMEESGFKPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAME 447 (666)
Q Consensus 369 ~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (666)
.+.|..-.. ...... ....+..+ ....-+..+...|....|...+..+... .+......+.......|..+.
T Consensus 385 -~~Lg~~~~~~~~~~~~-~~~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ 457 (644)
T PRK11619 385 -QRLGEEYPLKIDKAPK-PDSALTQG--PEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDL 457 (644)
T ss_pred -HHcCCCCCCCCCCCCc-hhhhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHH
Confidence 112221000 000000 00000001 1123345566778888888888777764 233444555555666777777
Q ss_pred HHHHHHHHHHcCCC--CChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHH
Q 038606 448 AFRFLTDMVQEGFL--PDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVA 501 (666)
Q Consensus 448 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 501 (666)
++.........+.. --+..|...+..+.+...++.++-.--.-.+.++.|+..+
T Consensus 458 ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 458 SVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 66655433221000 0112355666666665566665533333335556666543
No 278
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=5.8 Score=40.69 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=76.3
Q ss_pred HHHccCChHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 038606 473 GLIDIKRVDLALELFRDICAHGCCPDV--VAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNI 550 (666)
Q Consensus 473 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 550 (666)
++..-|+-++|..+.+++.... .|-. .-.-++..+|+..|+-....+++.-.... ...|..-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3445577778888888887642 2211 11234456788888877777777665554 344555555555566677888
Q ss_pred hHHHHHHHHHHhcCCCCCCHHhHHH--HHHHHHHcCChhHHHHHHHHHHH
Q 038606 551 DQAMLCLSRMLEKESGSPDVITYTT--LIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 551 ~~a~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
+....+.+-+.+... |.+..-.+ |.-+|+-.| ..+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses~N--~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYN--PHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcC--hhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 888888887776654 55543333 344444444 4788999998876
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.67 E-value=1.4 Score=35.75 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=35.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
.+.++.+.+..++..+.-..|..+..-..-+..+...|++.+|.++|+.+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 45567777777777766666666655555566666777777777777776654
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.63 E-value=0.44 Score=39.73 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
++.+.+.++.|+.-..+.+..+|....+....+.+|.+...+++|++-|.++.+.
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3444444555554444444444444444444444444444555555555555444
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.54 E-value=0.075 Score=30.10 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=17.9
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREG 60 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 60 (666)
.++..++.++...|++++|++.|+++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 345556666666666666666666666554
No 282
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.53 E-value=3.5 Score=38.25 Aligned_cols=132 Identities=13% Similarity=0.170 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHc--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCC--
Q 038606 481 DLALELFRDICAHGCCPDVVAYNIIISGLCK--A----QRVAEAEDLFNEMITKGL---IPSVATYNLLINGWCKSGN-- 549 (666)
Q Consensus 481 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~-- 549 (666)
+....+++.+.+.|+..+..+|-+....... . .....+..+++.|.+... .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777777666655543322222 1 234557777888877632 2334445444432 2222
Q ss_pred --hhHHHHHHHHHHhcCCCCCCH-HhHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038606 550 --IDQAMLCLSRMLEKESGSPDV-ITYTTLIDGLCIAGR--PDDAIMLWNEMEEKGCAPNRITFMALITG 614 (666)
Q Consensus 550 --~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 614 (666)
.+.++.+|+.+...+..+-+. .....++..+..... ..++.++++.+.+.|+++....|..+.-.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 345666666666644423333 222222222221111 34667777777777777776666555433
No 283
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.38 E-value=0.55 Score=38.72 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC
Q 038606 117 FDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG 149 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (666)
+++|+.-|++++..+|....++..++.++...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 345666666667777766667777777666544
No 284
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.20 E-value=0.64 Score=42.01 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCCHHHHH
Q 038606 535 ATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEE-----KGCAPNRITFM 609 (666)
Q Consensus 535 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 609 (666)
.++..++..+...|+++.+.+.++++....+ -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3556677777788888888888888887776 6777788888888888888888888887765 57777777766
Q ss_pred HHHHH
Q 038606 610 ALITG 614 (666)
Q Consensus 610 ~l~~~ 614 (666)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
No 285
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.19 E-value=6 Score=38.61 Aligned_cols=79 Identities=8% Similarity=0.017 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc-CChhhHHHHHHHHhhC
Q 038606 86 EMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW-GEVDKACELIERMDDC 164 (666)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 164 (666)
..+|+.+..+ +..|...|...+..+.+.+.+.+...+|.++...+|.+++.|..-+.-...- .+++.|..+|.+.++.
T Consensus 91 v~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 91 VFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 3444444443 2336666666666655556666666777777766666666665555433333 3366666666666665
Q ss_pred C
Q 038606 165 N 165 (666)
Q Consensus 165 ~ 165 (666)
+
T Consensus 170 n 170 (568)
T KOG2396|consen 170 N 170 (568)
T ss_pred C
Confidence 4
No 286
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.01 E-value=2.7 Score=34.00 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
.....++..+...+.+.....+++.+...+. .++...+.++..|++.+ ..+..+.++. .. +.......+..+.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~---~~yd~~~~~~~c~ 80 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KS---NHYDIEKVGKLCE 80 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--cc---ccCCHHHHHHHHH
Confidence 3455678888888899999999999988764 57778899999998653 3444444442 11 2233455677777
Q ss_pred hcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc-CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhh
Q 038606 147 KWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK-SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLC 216 (666)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (666)
+.+-++++.-++.++... ...+..+... ++++.|.+++.+ ..+...|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~---------~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF---------KDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCH---------HHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 777777777777666431 2223333333 677777777665 235556666666554
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.91 E-value=0.12 Score=29.75 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=13.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQV 56 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~ 56 (666)
|..+++.|.+.|++++|.++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555666666666666666553
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.83 E-value=0.1 Score=29.61 Aligned_cols=29 Identities=21% Similarity=0.022 Sum_probs=16.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREG 60 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 60 (666)
+|..++.++...|++++|+..|+++++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 45555666666666666666666665544
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.80 E-value=6.8 Score=37.88 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=83.5
Q ss_pred hHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 13 PLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 92 (666)
.|-+-...+++.. |..|.......+.....|+++.+......+...- .....+...+++...+.|++++|....+-|
T Consensus 307 aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~--~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~ 383 (831)
T PRK15180 307 AASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII--GTTDSTLRCRLRSLHGLARWREALSTAEMM 383 (831)
T ss_pred HHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh--cCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 3444444444433 3477777888888889999999999887766543 345667888899999999999999999999
Q ss_pred HhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 93 QDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
+...++ ++.+........-..|-++++...++++...++
T Consensus 384 l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 384 LSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 888777 444433333233455778899999998877655
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.76 E-value=0.76 Score=38.42 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=68.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDE-----HVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (666)
.-++++|++++|..-|..++..-|..+ ..|.--+.++.+.+.++.|+.-..+.++.++ ........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 445688888888888888877655322 2355556688899999999999999998863 2344444556688888
Q ss_pred CCHHHHHHHHHHHHhCC
Q 038606 184 SRVDKALQLFDKMTKSG 200 (666)
Q Consensus 184 ~~~~~A~~~~~~~~~~~ 200 (666)
..+++|++=|..+.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 99999999999998764
No 291
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.62 E-value=0.95 Score=37.39 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcC----------ChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC--
Q 038606 117 FDKALSVFNEIIDHGWVDEHVFSILLVAFSKWG----------EVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS-- 184 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 184 (666)
++.|.+.++.....+|.|.+.++.-+.++.... .+++|+.-|++++..++. ...++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhh
Confidence 455666666666666766665554444433332 244555556666665432 3345555555554433
Q ss_pred ---------CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC
Q 038606 185 ---------RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT 237 (666)
Q Consensus 185 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (666)
.+++|.+.|++.... .|+...|+.-+... .+|-++..++.+.+..
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred cCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 255666666666655 68888888777665 3577788888776543
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.58 E-value=0.37 Score=43.77 Aligned_cols=91 Identities=11% Similarity=-0.099 Sum_probs=62.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChh
Q 038606 73 LEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVD 152 (666)
Q Consensus 73 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (666)
++.|.++|.|++|++.|.+.....+ .|++++..-..+|.+...+..|..-.+.+...+.....+|...+.+-...|+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4567777888888888877766532 277777777777777777777777666666654444445666666666667777
Q ss_pred hHHHHHHHHhhC
Q 038606 153 KACELIERMDDC 164 (666)
Q Consensus 153 ~A~~~~~~~~~~ 164 (666)
+|.+-++..++.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 777777776665
No 293
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.55 E-value=2.7 Score=35.27 Aligned_cols=92 Identities=12% Similarity=0.056 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC---CchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWV---DEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (666)
+...+...|++++|...++........ .+-+-..+.+.....|.+++|...++.....+. .......-.+++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 345666778888888777776654321 112334566677777888888887777766532 222333445667777
Q ss_pred CCHHHHHHHHHHHHhCC
Q 038606 184 SRVDKALQLFDKMTKSG 200 (666)
Q Consensus 184 ~~~~~A~~~~~~~~~~~ 200 (666)
|+-++|+.-|+...+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888777654
No 294
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=11 Score=38.96 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=22.2
Q ss_pred HHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 208 YDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 208 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
|..+.++|.-..+.+.+.++++++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 55678888889999999999999887
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.44 E-value=0.17 Score=29.15 Aligned_cols=25 Identities=8% Similarity=-0.092 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 69 YNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
|..|+..|.+.|++++|.++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666643
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.40 E-value=14 Score=40.39 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 038606 321 SPNTSSFDIIINTLLKDG--KLDLALSLFREMTQ 352 (666)
Q Consensus 321 ~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 352 (666)
.|+ .....++..|.+.+ .++.++....+...
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 444 44445667777776 56666666666553
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.39 E-value=1.1 Score=37.82 Aligned_cols=62 Identities=19% Similarity=0.263 Sum_probs=39.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 536 TYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPD--VITYTTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
.+..+...|.+.|+.++|.+.|.++.+... .+. ...+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 556666777777777777777777665543 222 23455666666677777777777666654
No 298
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.18 E-value=0.23 Score=28.08 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038606 67 YSYNCLLEALCKSCSVDLVEMRLKEMQDYG 96 (666)
Q Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 96 (666)
.+|..++.++...|++++|...|+++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356667777777777777777777776643
No 299
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.15 E-value=13 Score=39.28 Aligned_cols=226 Identities=13% Similarity=-0.002 Sum_probs=116.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHH-HHHHccCChHHHHHHHHHHHhc----CCCccHHHHHHHH
Q 038606 439 LCKHGKAMEAFRFLTDMVQEGFLPDIV-------CYSAAI-GGLIDIKRVDLALELFRDICAH----GCCPDVVAYNIII 506 (666)
Q Consensus 439 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 506 (666)
.....++.+|..++.++...-..|+.. .++.+- ......|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888888877776542222221 222222 2233568888888888776643 1233455666677
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHHHH---HHH--HHHHHccCC--hhHHHHHHHHHHhcCCC-----CCCHHhHH
Q 038606 507 SGLCKAQRVAEAEDLFNEMITKGLIPSVATY---NLL--INGWCKSGN--IDQAMLCLSRMLEKESG-----SPDVITYT 574 (666)
Q Consensus 507 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l--~~~~~~~g~--~~~a~~~~~~~~~~~~~-----~~~~~~~~ 574 (666)
.+..-.|++++|..+..+..+..-..+...+ ..+ ...+..+|. ..+.+..|......... .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 7777789999988887776654222233322 222 223455663 33344444443332110 12223344
Q ss_pred HHHHHHHHc-CChhHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHccCChhHHHHHHHHHHHcCCC----CCHHHHHHHH
Q 038606 575 TLIDGLCIA-GRPDDAIMLWNEMEEKGCAPNRITF--MALITGLCKCDRPRAALVHFRMMKEKGMK----PDMFVFVALI 647 (666)
Q Consensus 575 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~ 647 (666)
.+..++.+. +...++..-+.-.......|-.... ..++......|++++|...+.++...... ++..+....+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 445555442 2222222223322222212222222 25667777889999999888888763222 2333333333
Q ss_pred HHH--HhcCChhhHHHHHh
Q 038606 648 SAF--LSELNPPLAFEVLK 664 (666)
Q Consensus 648 ~~~--~~~g~~~~A~~~~~ 664 (666)
... ...|+.+.|.....
T Consensus 665 ~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 665 KLILWLAQGDKELAAEWLL 683 (894)
T ss_pred hHHHhcccCCHHHHHHHHH
Confidence 322 36677777766543
No 300
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.11 E-value=0.14 Score=28.72 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=20.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREG 60 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 60 (666)
++..++.++.+.|++++|.+.|+++++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 45566777777777777777777777665
No 301
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.03 E-value=0.88 Score=40.31 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038606 516 AEAEDLFNEMITKGLIPSVATYNLLINGWCKSGN 549 (666)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 549 (666)
+-++.++++|...|+.||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3467777777777777777777777777766554
No 302
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.01 E-value=9.2 Score=37.04 Aligned_cols=120 Identities=15% Similarity=0.165 Sum_probs=78.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQL 192 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 192 (666)
..|+.-.|-+-+..++...+.+|.............|+++.+.+.+...... +.....+...++....+.|+++.|...
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4577776766666666666677776666677777788888887777665543 233556667777777778888888887
Q ss_pred HHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhC
Q 038606 193 FDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
-+-|....+ .|......-....-..|-++++...++++...
T Consensus 380 a~~~l~~ei-e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNEI-EDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhcccc-CChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 777776543 23333333333334456677777777777654
No 303
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.83 E-value=1.1 Score=39.63 Aligned_cols=89 Identities=15% Similarity=0.256 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------ChhHHH
Q 038606 321 SPNTSSFDIIINTLLK-----DGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSN----------------RLEESY 379 (666)
Q Consensus 321 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 379 (666)
..|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+.. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 4566677776666653 3567777778888999999999999999987765422 234566
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038606 380 ELLREMEESGFKPTHFTLNSMFRCLCRRQD 409 (666)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 409 (666)
+++++|...|+.||..+-..++.++.+.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 777777777777777777777777766654
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.68 E-value=11 Score=37.02 Aligned_cols=181 Identities=13% Similarity=0.120 Sum_probs=123.6
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHH
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLT 105 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 105 (666)
-+++..-+..++..+..+.++.-...+..++++.+ .+-..|..++++|..+ ..+.-..+++++.+..+. |.+.-.
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~R 136 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGR 136 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHH
Confidence 34456667778888888889999999999999876 5888899999999988 557788889988887655 555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC---Cc---hHHHHHHHHHHhcCChhhHHHHHHHHhhC-CCCcchhhHHHHHH
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWV---DE---HVFSILLVAFSKWGEVDKACELIERMDDC-NIRLNEKTFCVLIH 178 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 178 (666)
.|+..|-+ ++...+...|.++..+-.. +. .+|..+...- -.+.+.-.++..++... |...-...+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 66666644 8888888888887654221 11 2333333321 23455555555555443 22334455556667
Q ss_pred hhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh
Q 038606 179 GFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGL 215 (666)
Q Consensus 179 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (666)
-|....++++|++++..+.+.. ..|...-..++..+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 7888889999999999888765 45555555555544
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.62 E-value=0.3 Score=27.51 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
.|..++.++...|++++|++.|+++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666654
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.59 E-value=5.2 Score=33.12 Aligned_cols=47 Identities=17% Similarity=0.334 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHH
Q 038606 191 QLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFE 241 (666)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 241 (666)
+++..+.+.+++|+...|..++..+.+.|++....+ +...++-+|..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk 61 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSK 61 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcH
Confidence 334445556667777777777777777776544333 33334444443
No 307
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.35 E-value=11 Score=36.33 Aligned_cols=141 Identities=11% Similarity=0.027 Sum_probs=93.4
Q ss_pred hhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcC------CC------------------CCChhhHHH---HHHHH
Q 038606 24 SRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREG------LC------------------VPNNYSYNC---LLEAL 76 (666)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~------------------~~~~~~~~~---l~~~~ 76 (666)
+..|.-.+++..+...+..+|+.+.|.++.++++=.. .| +.|..-|.. .+..+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 3566778888999999999999999999888774210 01 113333333 35677
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHHHcCC-----CCchHHHHHHHHHHhcCC
Q 038606 77 CKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC-NSGQFDKALSVFNEIIDHGW-----VDEHVFSILLVAFSKWGE 150 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~ 150 (666)
.+.|-+..|.++.+-+...++..|+......|..|+ +.++++--+++.+....... .-|....+.+.++...++
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~ 193 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK 193 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence 888899999999998888877767777666776654 66788878887777554211 122333344444444555
Q ss_pred h---------------hhHHHHHHHHhhC
Q 038606 151 V---------------DKACELIERMDDC 164 (666)
Q Consensus 151 ~---------------~~A~~~~~~~~~~ 164 (666)
. +.|.+.+.++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~ 222 (360)
T PF04910_consen 194 EESSQSSAQSGRSENSESADEALQKAILR 222 (360)
T ss_pred ccccccccccccccchhHHHHHHHHHHHH
Confidence 4 6777777776654
No 308
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.26 E-value=4.4 Score=31.52 Aligned_cols=20 Identities=10% Similarity=0.423 Sum_probs=14.9
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 038606 283 LVSNGSIDQAYNLLQAMIKG 302 (666)
Q Consensus 283 ~~~~~~~~~A~~~~~~~~~~ 302 (666)
+.-.|..++..++.......
T Consensus 12 ~ildG~V~qGveii~k~v~S 31 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS 31 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHcCc
Confidence 45678889999999888763
No 309
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.20 E-value=13 Score=36.58 Aligned_cols=100 Identities=9% Similarity=0.014 Sum_probs=69.9
Q ss_pred CCCHHHH-HHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHH--cCChhHHHHHHHHHHHcCCCCCHHH
Q 038606 531 IPSVATY-NLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCI--AGRPDDAIMLWNEMEEKGCAPNRIT 607 (666)
Q Consensus 531 ~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~ 607 (666)
.|+..++ +.++.-+...|-..+|...+..+....| |+...|..++..-.. .-+..-+..+++.|... +-.++..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp--~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPP--FSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHH
Confidence 3454443 4566777788888889999988877765 777777777765322 23367778888887763 2257777
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 608 FMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 608 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
|...+..-...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77776666678888888888877765
No 310
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.96 E-value=19 Score=38.05 Aligned_cols=119 Identities=8% Similarity=-0.017 Sum_probs=71.2
Q ss_pred hcCChhHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHH
Q 038606 371 NSNRLEESYELLREMEESG-FKPTH--FTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAME 447 (666)
Q Consensus 371 ~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 447 (666)
...+.+.|...+..+.... ..+.. .+...+.......+..+++...+....... .+.......+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3456688999998874442 22221 223334333333332556666666544332 234444445556668889988
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHh
Q 038606 448 AFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICA 492 (666)
Q Consensus 448 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 492 (666)
+...+..|.... .-...-.--+..++...|+.++|...|+.+..
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888875542 22334444566676778999999999998743
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.86 E-value=11 Score=35.14 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=103.2
Q ss_pred cchHHHHHHHHhccCChHHHHHH---HHHHHHc-CCC-CCChhhHHHHHHHHHhcCC-----hhHHHHHHHHHHhcCCCC
Q 038606 30 PGALGFLIRCLGSVGLVEEANML---FDQVKRE-GLC-VPNNYSYNCLLEALCKSCS-----VDLVEMRLKEMQDYGWGY 99 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~---~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~ 99 (666)
..+....+..|.-.++.-.+.++ -+.+.+. +.+ +-.......++..+.-.++ ++....+++.+.+.|+..
T Consensus 16 ~~i~~~~A~~~~~~~~~~d~~~~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~ 95 (297)
T PF13170_consen 16 DRINMFIALMYTVNNKEFDAERFKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKR 95 (297)
T ss_pred cchHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCc
Confidence 33556666667666654333322 2223332 111 1122222333334444444 445677888999999987
Q ss_pred CcccHHHHHHHHHh--cC----ChhHHHHHHHHHHHcCCC--Cc--hHHHHHHHHHHhcCC----hhhHHHHHHHHhhCC
Q 038606 100 DKYTLTPLLQVYCN--SG----QFDKALSVFNEIIDHGWV--DE--HVFSILLVAFSKWGE----VDKACELIERMDDCN 165 (666)
Q Consensus 100 ~~~~~~~l~~~~~~--~~----~~~~A~~~~~~~~~~~~~--~~--~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~ 165 (666)
+..++.+....... .. ....|..+|+.|.+.+|. .+ ..+..++.. ...+ .+.++.+|+.+.+.|
T Consensus 96 ~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~ 173 (297)
T PF13170_consen 96 SEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAG 173 (297)
T ss_pred cChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhC
Confidence 77666654333322 22 346889999999998873 22 223333222 3333 356677788887766
Q ss_pred CCcchh--hHHHHHHhhhccCC--HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCC
Q 038606 166 IRLNEK--TFCVLIHGFVKKSR--VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQ 220 (666)
Q Consensus 166 ~~~~~~--~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 220 (666)
+..+.. ....++.......+ ..++.++++.+.+.+++.....|..++-...-.+.
T Consensus 174 f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~ 232 (297)
T PF13170_consen 174 FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDP 232 (297)
T ss_pred CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCc
Confidence 654332 23333333222222 45788889999999888877777665544433333
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.84 E-value=3.8 Score=34.66 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=42.5
Q ss_pred hHHHHHHhhhccCCHHHHHHHHHHHHhCCCCcc--HHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 172 TFCVLIHGFVKKSRVDKALQLFDKMTKSGFASD--AAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 172 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
.+..+...|.+.|+.++|++.|.++.+....+. ...+-.+|......|++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777777888888888877776543332 33456667777777888877777777655
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.63 E-value=25 Score=38.77 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=57.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHH-HcCC---CCchHHHHHHHHHHhc-CChhhHHHHHHHHhhCCCCcchhhHHH----HH
Q 038606 107 LLQVYCNSGQFDKALSVFNEII-DHGW---VDEHVFSILLVAFSKW-GEVDKACELIERMDDCNIRLNEKTFCV----LI 177 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~-~~~~---~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~ 177 (666)
-+.-+...+++.+|.++..+-. ..++ .++..+..-+.++.+. ++.+--...+..+...++ +...|.. -.
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDv--tk~~y~~~~~s~k 760 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDV--TKTMYSSTSGSGK 760 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchh--hhhhccccccccc
Confidence 3444556666666655544322 1111 1344444444444443 444444444444443322 1111111 11
Q ss_pred HhhhccC----CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccC--ChhHHHHHHHHHHh
Q 038606 178 HGFVKKS----RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNK--QLEMALQLYSEMKG 233 (666)
Q Consensus 178 ~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 233 (666)
..|.... ..+...+......... .|+ .-...++.+|.+.+ ..+.+++...+...
T Consensus 761 ~~~~~r~~~d~kv~~vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 761 QVYMSRDPYDNKVNSVCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred eeEEeccchhhHHHHHHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 1222222 2333333344333333 455 44556788888877 67777777777664
No 314
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.38 E-value=20 Score=37.23 Aligned_cols=177 Identities=16% Similarity=0.140 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHHcCCCCCChhhHHHHHHHHH-----hcCChhHHHHHHHHHHh-------cCCCCCcccHHHHHHHHHh
Q 038606 46 VEEANMLFDQVKREGLCVPNNYSYNCLLEALC-----KSCSVDLVEMRLKEMQD-------YGWGYDKYTLTPLLQVYCN 113 (666)
Q Consensus 46 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 113 (666)
...|.++|+.+.+.+ +......++.+|. ...|.+.|..+|+.+.+ .+ .+.....+..+|.+
T Consensus 228 ~~~a~~~~~~~a~~g----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHhhc----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 467888998888865 5555555554443 45689999999998877 44 44466677777776
Q ss_pred cC-----ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhc---CChhhHHHHHHHHhhCCCCcchhhHHHHHHhhh----
Q 038606 114 SG-----QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKW---GEVDKACELIERMDDCNIRLNEKTFCVLIHGFV---- 181 (666)
Q Consensus 114 ~~-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 181 (666)
.. +...|..++.+....+. +.....++.++..- .+...|.++|..+...|.. ..+-.+...|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG 375 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence 43 66779999988888874 44444444444433 3678899999988887732 22222222221
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCC
Q 038606 182 KKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGI 236 (666)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 236 (666)
-..+.+.|..++.+.-+.| .|-...-...+..+.. +.++.+...+..+.+.|.
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2347788888888888776 3332222223334444 777777777777766543
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.12 E-value=23 Score=37.45 Aligned_cols=161 Identities=11% Similarity=0.047 Sum_probs=93.6
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCC--CcccHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCc---
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQD-YGWGY--DKYTLTPLLQVYC-NSGQFDKALSVFNEIIDHGWVDE--- 135 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~--- 135 (666)
+.....|..|+. .|.+.++.+.+ ..++| +..+...++..+. ...+++.|+..+++.......+.
T Consensus 27 ~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 345567777774 45566777763 33333 2345556666666 67899999999998754432111
Q ss_pred ---hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC----cchhhHHHH-HHhhhccCCHHHHHHHHHHHHhCC---CCcc
Q 038606 136 ---HVFSILLVAFSKWGEVDKACELIERMDDCNIR----LNEKTFCVL-IHGFVKKSRVDKALQLFDKMTKSG---FASD 204 (666)
Q Consensus 136 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 204 (666)
.+...++..+.+.+... |...+++.++.--. +-...+.-+ +..+...+++..|.+.++.+.... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 12345566777776666 88888887653211 112222222 222333479999999998876531 2344
Q ss_pred HHHHHHHHHhhh--ccCChhHHHHHHHHHHh
Q 038606 205 AAMYDVIIGGLC--KNKQLEMALQLYSEMKG 233 (666)
Q Consensus 205 ~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 233 (666)
...+..++.+.. +.+..+++.+.++++..
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 444444444433 45666777777776643
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.99 E-value=0.02 Score=46.81 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=16.8
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 038606 78 KSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALS 122 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 122 (666)
+.+.+.....+++.+...+...+....+.++..|++.++.++..+
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~ 63 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE 63 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH
Confidence 333444444444444433322233334444444444433333333
No 317
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=90.92 E-value=1.6 Score=43.15 Aligned_cols=87 Identities=11% Similarity=0.020 Sum_probs=45.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHH
Q 038606 79 SCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELI 158 (666)
Q Consensus 79 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (666)
.|+.-.|.+.+..+....+.-..+....|.+...+.|-...|-.++.+.+......|-.+..++.++....++++|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 45555555555555443333333344444555555555555555555555544444445555555555555555555555
Q ss_pred HHHhhCC
Q 038606 159 ERMDDCN 165 (666)
Q Consensus 159 ~~~~~~~ 165 (666)
.++.+..
T Consensus 700 ~~a~~~~ 706 (886)
T KOG4507|consen 700 RQALKLT 706 (886)
T ss_pred HHHHhcC
Confidence 5555543
No 318
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.84 E-value=10 Score=33.01 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHHcCC---CC---chHHHHHHHHHHhcCChhhHHHHHHHHhhCCC
Q 038606 107 LLQVYCNS-GQFDKALSVFNEIIDHGW---VD---EHVFSILLVAFSKWGEVDKACELIERMDDCNI 166 (666)
Q Consensus 107 l~~~~~~~-~~~~~A~~~~~~~~~~~~---~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 166 (666)
+...|-.. .++++|+..|++...--. .+ ..++.-+.......+++.+|+++|+++.....
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444333 455566666655543211 11 12334444455556667777777766655443
No 319
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.75 E-value=8.8 Score=33.78 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=53.7
Q ss_pred HHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 15 RVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
..-.+.++..|...-.+++..++.-+...|+++.|+++.+-+++++...|+.+.. .+...+ .++..++.....+
T Consensus 68 ~p~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R-~~~t~v-----aeev~~~A~~~~~ 141 (230)
T PHA02537 68 LPWVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRR-TLANFV-----AEEVANAALKAAS 141 (230)
T ss_pred HHHHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccC-CchHHH-----HHHHHHHHHHHHH
Confidence 3344666666776777888889999999999999999999999998644443221 222222 2555555566666
Q ss_pred cCCCCCcc
Q 038606 95 YGWGYDKY 102 (666)
Q Consensus 95 ~~~~~~~~ 102 (666)
.|.+.++.
T Consensus 142 ag~~~e~~ 149 (230)
T PHA02537 142 AGESVEPY 149 (230)
T ss_pred cCCCCChH
Confidence 65544443
No 320
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.74 E-value=8.1 Score=31.60 Aligned_cols=54 Identities=24% Similarity=0.099 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038606 283 LVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQI 353 (666)
Q Consensus 283 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 353 (666)
-.+.++.+++..++..+.-.. |.....-..-...+...|++.+|..+|+.+...
T Consensus 20 al~~~~~~D~e~lL~ALrvLR-----------------P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLR-----------------PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhC-----------------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344556666666666655442 222222222234455666666666666666543
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.58 E-value=17 Score=35.14 Aligned_cols=66 Identities=12% Similarity=0.015 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHh
Q 038606 497 PDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIP---SVATYNLLINGWCKSGNIDQAMLCLSRMLE 562 (666)
Q Consensus 497 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (666)
....++..++..+-+.|+++.|...+..+...+... .+.....-+......|+..+|...++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777788888888888888888877643211 233444445666677888888888888776
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.41 E-value=10 Score=32.12 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHhcCC-CCCCHHhHHHH
Q 038606 500 VAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYN--LLINGWCKSGNIDQAMLCLSRMLEKES-GSPDVITYTTL 576 (666)
Q Consensus 500 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l 576 (666)
..|..++.... .+.+ +.....+++..........++. .+...+...|++++|...++....... .......-..|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 34444444432 3333 5555666666542121222222 335567888999999999987765421 00111122345
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 038606 577 IDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKG 635 (666)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 635 (666)
.+.....|.+++|+.+++.....++ .......-.+.+...|+.++|+.-|++..+.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5667788999999999888776432 23334455678888999999999999988764
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.27 E-value=0.39 Score=25.12 Aligned_cols=23 Identities=35% Similarity=0.226 Sum_probs=13.7
Q ss_pred hHHHHHHHHhccCChHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFD 54 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~ 54 (666)
....++..+...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555666666666666666554
No 324
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.25 E-value=20 Score=35.35 Aligned_cols=181 Identities=12% Similarity=0.078 Sum_probs=113.9
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHH
Q 038606 426 EPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNII 505 (666)
Q Consensus 426 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 505 (666)
+.+......++..+..+.++.-...+..+|+..| -+...+..++.+|... ..+.-..+|+++.+..+ .|++.-..+
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4556666777777888878888888888888764 4667777888888777 66777788887777642 344444555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHH
Q 038606 506 ISGLCKAQRVAEAEDLFNEMITKGLIPS------VATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDG 579 (666)
Q Consensus 506 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 579 (666)
...|.+ ++.+.+..+|.++... +.|. ...|.-+... -..+.+....+..++.+..+...-...+.-+-.-
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 555544 7778888888887765 2221 1133333321 1345666677777766655533444455555566
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038606 580 LCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGL 615 (666)
Q Consensus 580 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 615 (666)
|....++.+|++++.-+.+.. .-|...-..++..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 215 YSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred hccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 777777888888887777653 23444444455433
No 325
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.15 E-value=12 Score=32.92 Aligned_cols=98 Identities=11% Similarity=-0.037 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCC-----------cccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDY------GWGYD-----------KYTLTPLLQVYCNSGQFDKALSVFNEIIDH 130 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 130 (666)
+...-++-+.+.|++.+|..-|..++-. .-+|. ...+...-+++...|++-++++.-..++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3334444556666666666665554321 01111 122333445666778999999999999999
Q ss_pred CCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 131 GWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 131 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
.+.+..+|..-+.+.+..-+..+|.+=|...++.+
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 88888888888888888888999998888888864
No 326
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.02 E-value=2.6 Score=30.60 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038606 588 DAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALI 647 (666)
Q Consensus 588 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 647 (666)
++.+-++.+....+.|++.+..+.+++|.+.+++..|+++++..+.+- ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555566666667777777777777777777777777777666431 22334454444
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.91 E-value=5.8 Score=31.81 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=4.3
Q ss_pred CChhhHHHHHHH
Q 038606 149 GEVDKACELIER 160 (666)
Q Consensus 149 g~~~~A~~~~~~ 160 (666)
|++.+|.++|+.
T Consensus 58 g~w~eA~rvlr~ 69 (153)
T TIGR02561 58 GNYDEAARILRE 69 (153)
T ss_pred CCHHHHHHHHHh
Confidence 333333333333
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.79 E-value=2.4 Score=30.78 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 83 DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 83 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
=++++.++.+...+.-|++.+..+.++++.+.+++.-|+++|+.+..+-..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 3667777777777777888888888888888888888888888877443223334554443
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.71 E-value=9.3 Score=30.69 Aligned_cols=58 Identities=12% Similarity=0.004 Sum_probs=30.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 038606 76 LCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVD 134 (666)
Q Consensus 76 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 134 (666)
-...++.+++..++..+.-..|. ....-..-...+...|++++|..+|+.+.+..+..
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~ 77 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAP 77 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc
Confidence 34466666666666666554333 22222222334455666666666666666655433
No 330
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=5.9 Score=34.54 Aligned_cols=118 Identities=14% Similarity=-0.059 Sum_probs=77.9
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCC
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD-KYTLTPLLQVYCNSGQ 116 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 116 (666)
+.|....++..|...|.+++..+ |..+.-|..-+-++.+..+++.+..--.+.++.. || ......+..+......
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~n--P~~~~Y~tnralchlk~~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICIN--PTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcC--CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhhcc
Confidence 45667778889999888888876 3344566677888888889998888888888753 33 3345556677778888
Q ss_pred hhHHHHHHHHHHHcC---CC--CchHHHHHHHHHHhcCChhhHHHHHH
Q 038606 117 FDKALSVFNEIIDHG---WV--DEHVFSILLVAFSKWGEVDKACELIE 159 (666)
Q Consensus 117 ~~~A~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (666)
+++|+.++.+..+.. +. -...+..|..+--..-...+..++.+
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 899988888774432 21 22345555554444444444444333
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.53 E-value=1.9 Score=42.63 Aligned_cols=128 Identities=11% Similarity=-0.087 Sum_probs=97.8
Q ss_pred HHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 038606 17 LAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYG 96 (666)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 96 (666)
.++.++++...+.=-+++.-.-.....|+...|...+..+.-..+ .........|.+...+.|....|-.++.+.+...
T Consensus 594 ~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p-~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~ 672 (886)
T KOG4507|consen 594 FLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAP-LQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN 672 (886)
T ss_pred HHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccCh-hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 345556655444444445555555667999999999988886552 2233467778888999999999999999998876
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 97 WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
. ..+.++..+.++|....+.++|++.|+++.+..+.++.+-+.+....+
T Consensus 673 ~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 673 S-SEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred c-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 3 377788889999999999999999999999999988888777776555
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.47 E-value=5.9 Score=39.58 Aligned_cols=83 Identities=20% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 038606 322 PNTSSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLNSMF 401 (666)
Q Consensus 322 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 401 (666)
.+..-|..|..+....|++..|.+.|..... |..|+-.+...|+.+....+-....+.| . .|..+
T Consensus 664 ~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~-----~N~AF 728 (794)
T KOG0276|consen 664 NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K-----NNLAF 728 (794)
T ss_pred cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c-----cchHH
Confidence 3455566777777777777777777766544 3345555555666554444444444443 1 12333
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 038606 402 RCLCRRQDVVGALNLVRK 419 (666)
Q Consensus 402 ~~~~~~~~~~~a~~~~~~ 419 (666)
.+|...|+++++.+++..
T Consensus 729 ~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHcCCHHHHHHHHHh
Confidence 445556676666665543
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.38 E-value=29 Score=36.02 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHH--HHHh-hhccCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHhhhccCc
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDV--IIGG-LCKNKQLEMALQLYSEMKG-------SGITPDFEILSKLITSCSDEGE 255 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~~~ 255 (666)
...|.++++...+.|. ........ ...+ +....+.+.|..+|+.+.+ .|.
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~------------------- 287 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL------------------- 287 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC-------------------
Confidence 5678888888887652 22222211 2223 4567789999999998876 221
Q ss_pred HHHHHHHHHhhCCCCCccchHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHHHH
Q 038606 256 LTLLVKEIWEDRDVNTMTLLCNSIMRILVSNG-----SIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFDII 330 (666)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (666)
......+..+|.+.. +...|..++......+ .|+.......
T Consensus 288 -----------------~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-----------------~~~a~~~lg~ 333 (552)
T KOG1550|consen 288 -----------------PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-----------------NPDAQYLLGV 333 (552)
T ss_pred -----------------CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-----------------CchHHHHHHH
Confidence 134455666666643 6777999999888876 5555554444
Q ss_pred HHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 038606 331 INTLLK-DGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLC----NSNRLEESYELLREMEESGFKPTHFTLNSMFRCLC 405 (666)
Q Consensus 331 ~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 405 (666)
+..... ..+...|.++|....+.|. ...+-.+..+|. ...+.+.|..++++..+.| .|........+..+.
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYG 409 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHc
Confidence 433333 3567899999999988772 222222332222 2346788889999888887 333333333344444
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 038606 406 RRQDVVGALNLVRKMRVQG 424 (666)
Q Consensus 406 ~~~~~~~a~~~~~~~~~~~ 424 (666)
. +.++.+.-.+..+.+.+
T Consensus 410 ~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 410 V-GRYDTALALYLYLAELG 427 (552)
T ss_pred c-ccccHHHHHHHHHHHhh
Confidence 4 66666666666665554
No 334
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=89.17 E-value=6.4 Score=31.06 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=54.6
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 038606 14 LRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQ 93 (666)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 93 (666)
-..-.+.++..|.....+++..++.-+...|+++.|+.+.+-+++++...|+.+ ..-..... .++..+...+..
T Consensus 32 Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~~f--~R~~~t~v----aeev~~~a~~~~ 105 (132)
T PF05944_consen 32 YLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPDRF--KRTLPTFV----AEEVADWALRAA 105 (132)
T ss_pred HHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccccc--cCcchHHH----HHHHHHHHHHHH
Confidence 334456777777777788999999999999999999999999999986444432 22111111 244444444555
Q ss_pred hcCCCCCcccHH
Q 038606 94 DYGWGYDKYTLT 105 (666)
Q Consensus 94 ~~~~~~~~~~~~ 105 (666)
+.|.+.++..+.
T Consensus 106 ~~g~~~~~~~l~ 117 (132)
T PF05944_consen 106 KAGQSFEPYFLS 117 (132)
T ss_pred HcCCCCChHHHH
Confidence 555554544433
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.14 E-value=0.67 Score=27.64 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=15.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKR 58 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 58 (666)
+++.++..|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455566666666666666666665553
No 336
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.09 E-value=5.7 Score=28.98 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=34.4
Q ss_pred HHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCC
Q 038606 52 LFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGY-DKYTLTPLLQVYCNSGQ 116 (666)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 116 (666)
.++..++.+ |.|......+...+...|++++|.+.+-.+++.+... +...-..++..+...|.
T Consensus 10 al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 10 ALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344444444 5566677777777777777777777777776654443 33344445555544444
No 337
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.87 E-value=38 Score=36.68 Aligned_cols=113 Identities=13% Similarity=0.230 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCchHHHHHHHHHHhcCCh--hhHHHHHHHHhhCCCCcchhhHHH--
Q 038606 104 LTPLLQVYCNSGQFDKALSVFNEIIDHG----WVDEHVFSILLVAFSKWGEV--DKACELIERMDDCNIRLNEKTFCV-- 175 (666)
Q Consensus 104 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~-- 175 (666)
|..|+..|...|+.++|++++.+..+.. ......+..++..+.+.+.. +-..++-+.....++......+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6778888888888888888888877643 11122333344444444433 444444444443322111111111
Q ss_pred ----------HHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhh
Q 038606 176 ----------LIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLC 216 (666)
Q Consensus 176 ----------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (666)
.+-.|.+....+-+..+++.+....-.++....+.++..|+
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 12234456666777777777766544455555566666554
No 338
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.76 E-value=6.6 Score=28.97 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcCChh--HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHH
Q 038606 69 YNCLLEALCKSCSVD--LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLV 143 (666)
Q Consensus 69 ~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 143 (666)
+..--..+....+.+ +.++.++.+...+.-|++.+..+.++++.+.+++.-|+++|+.+...-......|..++.
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 333334444444333 667777777777777888888888888888888888888888887654333335555554
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.58 E-value=0.75 Score=25.86 Aligned_cols=28 Identities=25% Similarity=0.127 Sum_probs=16.9
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHc
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKRE 59 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 59 (666)
+|..++..|...|++++|.+.|+++.+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555666666666666666666666554
No 340
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.56 E-value=6.6 Score=33.48 Aligned_cols=72 Identities=10% Similarity=0.074 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCchHHHHHHHHHHhcCChhhH
Q 038606 82 VDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHG----WVDEHVFSILLVAFSKWGEVDKA 154 (666)
Q Consensus 82 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A 154 (666)
-+.|...|-++...+.--++.....|...| ...+.++++.++-++++.. ..++..+.+|+..+.+.|+++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 356666666665544333445555555544 3567777777777666532 24667777777777777777766
No 341
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.51 E-value=0.75 Score=25.55 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 69 YNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
+..++.++.+.|++++|...|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555555556666666666655554
No 342
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.92 E-value=5.1 Score=36.42 Aligned_cols=104 Identities=13% Similarity=0.235 Sum_probs=76.3
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 038606 316 FKGTVSPNTSSFDIIINTLLKDGKLDLALSLFREMTQIG---CMQ--NVFLYNNLIDGLCNSNRLEESYELLREMEESGF 390 (666)
Q Consensus 316 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 390 (666)
|.++.+.+..+...++.......+++++...+-++.... ..+ ..++|..+ + -.-++++++.++..=.+-|+
T Consensus 56 F~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGi 131 (418)
T KOG4570|consen 56 FERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGI 131 (418)
T ss_pred hhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhcc
Confidence 344446677777777777777888999998888776431 112 22333322 2 23467788888888888999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038606 391 KPTHFTLNSMFRCLCRRQDVVGALNLVRKMRVQ 423 (666)
Q Consensus 391 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 423 (666)
-||.++++.++..+.+.+++..|..+.-.+...
T Consensus 132 F~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 132 FPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999999999888777654
No 343
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.48 E-value=25 Score=32.92 Aligned_cols=191 Identities=17% Similarity=0.093 Sum_probs=113.8
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh--
Q 038606 40 LGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKS----CSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN-- 113 (666)
Q Consensus 40 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 113 (666)
....+++..|...+......+ +......++..|... .+..+|.++|...-+.|. +.....+...|..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~ 123 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELG----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGR 123 (292)
T ss_pred ccccccHHHHHHHHHHhhhcC----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCC
Confidence 345567777777777777643 235555555555533 356678888887766543 3334445555554
Q ss_pred --cCChhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHhcC-------ChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc-
Q 038606 114 --SGQFDKALSVFNEIIDHGWVDE-HVFSILLVAFSKWG-------EVDKACELIERMDDCNIRLNEKTFCVLIHGFVK- 182 (666)
Q Consensus 114 --~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 182 (666)
..+..+|...|+++...+..+. .+...+...|..-. +...|...+.++...+ +......+...|..
T Consensus 124 gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G 200 (292)
T COG0790 124 GVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKG 200 (292)
T ss_pred CcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcC
Confidence 3377888888888877764332 22444444444421 2346888888887765 33344444444422
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccC---------------ChhHHHHHHHHHHhCCCCCCHHHHH
Q 038606 183 ---KSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNK---------------QLEMALQLYSEMKGSGITPDFEILS 244 (666)
Q Consensus 183 ---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (666)
..++++|...|...-+.|. ......+. .+...| +...|...+......+.........
T Consensus 201 ~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 201 LGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3478888888888887763 22222222 333333 7778888888888877666555555
No 344
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.42 E-value=29 Score=33.58 Aligned_cols=66 Identities=15% Similarity=0.044 Sum_probs=47.7
Q ss_pred cchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCc---cHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 168 LNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFAS---DAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 168 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
....++..++..+.+.|.++.|...+..+...+... ++.....-+......|+..+|...+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667788888888999999999888887643111 333444456677778888899988888776
No 345
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.36 E-value=5.9 Score=28.90 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=27.8
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 123 VFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
-+++....+|.|..+...+...+...|++++|++.+-.+++.+
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3455555666677777777777777777777777777776654
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=87.13 E-value=3.2 Score=30.46 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038606 588 DAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEK 634 (666)
Q Consensus 588 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 634 (666)
+..+-++.+....+.|++.+..+.+++|.+.+++..|+++++..+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555666677777777777777777777777777776653
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.03 E-value=1 Score=23.55 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHh
Q 038606 642 VFVALISAFLSELNPPLAFEVLK 664 (666)
Q Consensus 642 ~~~~l~~~~~~~g~~~~A~~~~~ 664 (666)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666777777777776665
No 348
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.85 E-value=1.6 Score=24.41 Aligned_cols=28 Identities=7% Similarity=-0.025 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
+|..++..|...|++++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566666777777777777777776654
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.75 E-value=8.5 Score=38.56 Aligned_cols=153 Identities=16% Similarity=0.045 Sum_probs=82.9
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChh
Q 038606 39 CLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFD 118 (666)
Q Consensus 39 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (666)
.+.-.|+++.|-..+-.+.+ ...+.++..+-++|..++|.++- +|+.-.. ....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~k--------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~rF---elal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPK--------EIRTKVAHFLESQGMKEQALELS---------TDPDQRF---ELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCch--------hhhhhHHhHhhhccchHhhhhcC---------CChhhhh---hhhhhcCcHH
Confidence 33445666666654433332 23344555566666655554432 2222221 1223567777
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHh
Q 038606 119 KALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTK 198 (666)
Q Consensus 119 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (666)
.|.++..+. .++.-|..|+.+....|++..|.+.|.+.... ..|+-.+...|+-+....+-....+
T Consensus 655 iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 655 IAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred HHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHh
Confidence 776654332 13445777777777777777777777666542 3455556666666655555555555
Q ss_pred CCCCccHHHHHHHHHhhhccCChhHHHHHHHHH
Q 038606 199 SGFASDAAMYDVIIGGLCKNKQLEMALQLYSEM 231 (666)
Q Consensus 199 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 231 (666)
.| ..+. -.-+|...|+++++.+++.+-
T Consensus 721 ~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 721 QG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 54 2222 223455567777777766554
No 350
>PRK09687 putative lyase; Provisional
Probab=86.66 E-value=27 Score=32.39 Aligned_cols=137 Identities=12% Similarity=0.046 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHhcCCCCCCHHhHHHH
Q 038606 498 DVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSG-NIDQAMLCLSRMLEKESGSPDVITYTTL 576 (666)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 576 (666)
+..+-...+.++++.++ +++...+-.+.+. ++..+-...+.++...+ +...+...+..+... ++...-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHH
Confidence 44455555666666665 4555666666553 34445455555555442 234556666555532 444555556
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038606 577 IDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFL 651 (666)
Q Consensus 577 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 651 (666)
+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+++|.
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666666 44555555554432 2 233566677777774 677777777754 456666666665553
No 351
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.51 E-value=1.6 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=16.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
+++.++..|...|++++|..+++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 556666666666666666666666654
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=15 Score=32.16 Aligned_cols=85 Identities=7% Similarity=-0.178 Sum_probs=46.7
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHH
Q 038606 76 LCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKAC 155 (666)
Q Consensus 76 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (666)
|.....++.|...|.+.+..++. .+.-|+.-+..+.+..+++.+..=-...++..+...-....++........++.|+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 44445566666666666654332 22334444555556666666655555555554444444555555666666666666
Q ss_pred HHHHHH
Q 038606 156 ELIERM 161 (666)
Q Consensus 156 ~~~~~~ 161 (666)
..+.+.
T Consensus 99 ~~Lqra 104 (284)
T KOG4642|consen 99 KVLQRA 104 (284)
T ss_pred HHHHHH
Confidence 666555
No 353
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.77 E-value=12 Score=34.19 Aligned_cols=101 Identities=20% Similarity=0.131 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC--CCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 038606 531 IPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKES--GSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITF 608 (666)
Q Consensus 531 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 608 (666)
..+..+...++..-....+++.++..+-++..... ..|+.. -.+.++.+.+ -++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchhccccchhhH
Confidence 33444444444444445556666666655543211 011111 1122222222 2455666666666667777777777
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHH
Q 038606 609 MALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 609 ~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
+.+++.+.+.+++.+|..+...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 7777777777777777766666554
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.43 E-value=1.6 Score=26.48 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=9.6
Q ss_pred HHHHHhccCChHHHHHHHHHHH
Q 038606 36 LIRCLGSVGLVEEANMLFDQVK 57 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~~~~~~ 57 (666)
++++|...|+.+.|+++++.++
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444444444444444444444
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.04 E-value=3.6 Score=36.93 Aligned_cols=60 Identities=7% Similarity=-0.023 Sum_probs=42.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038606 69 YNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIID 129 (666)
Q Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 129 (666)
+......|..+|.+.+|.++.++.+..++ .+...+..+++.+...|+--.|.+-++++..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34455677788888888888888877643 3667777788888888887777777666544
No 356
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.75 E-value=22 Score=29.62 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 038606 345 SLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHFTLN 398 (666)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 398 (666)
+.++.+.+.+++++...+..++..+.+.|++.... .+...++-+|.....
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA 64 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLA 64 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHH
Confidence 34455556667777777777777777777654433 333444455554443
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.52 E-value=29 Score=30.96 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=28.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038606 372 SNRLEESYELLREMEESGFKPT---HFTLNSMFRCLCRRQDVVGALNLVRKMR 421 (666)
Q Consensus 372 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 421 (666)
...+++|+.-|++..+..-... -..+..++....+.+++++....+.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3456777777777665421111 2234455666666666666666666554
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.28 E-value=39 Score=32.17 Aligned_cols=123 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred hHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc---cCChhHHHHHHH
Q 038606 153 KACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCK---NKQLEMALQLYS 229 (666)
Q Consensus 153 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~ 229 (666)
.-+.+++++++.++ .+...+..++..+.+..+.+...+.++.+.... +.+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 33455555555532 344455555555555566666666666666543 3345555555544332 223445555554
Q ss_pred HHHhC------CC----CCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 038606 230 EMKGS------GI----TPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGSIDQAYNLLQAM 299 (666)
Q Consensus 230 ~~~~~------~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 299 (666)
+.... +. .+-..+...+ ..++..+.....+.|..+.|..+++.+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~--------------------------l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFM--------------------------LYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHH--------------------------HHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 44321 00 0000011111 134555666778899999999999999
Q ss_pred HhCC
Q 038606 300 IKGE 303 (666)
Q Consensus 300 ~~~~ 303 (666)
.+-+
T Consensus 181 lE~n 184 (321)
T PF08424_consen 181 LEFN 184 (321)
T ss_pred HHHH
Confidence 8765
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.92 E-value=2 Score=23.18 Aligned_cols=27 Identities=22% Similarity=0.126 Sum_probs=14.5
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHH
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKR 58 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 58 (666)
.+..++.++...|+++.|...|...++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344455555555555555555555544
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.86 E-value=19 Score=30.85 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=48.7
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhh
Q 038606 582 IAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEK---GMKPDMFVFVALISAFLSELNPPL 658 (666)
Q Consensus 582 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 658 (666)
+.|+ +.|.+.|-.+...+.-.++.....+..-| ...+.++++.++.+..+. +-.+|+..+..|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3344 56677776666655444555554444444 356777777777777652 225567788888888888887777
Q ss_pred HH
Q 038606 659 AF 660 (666)
Q Consensus 659 A~ 660 (666)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 63
No 361
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.67 E-value=53 Score=33.21 Aligned_cols=139 Identities=14% Similarity=0.072 Sum_probs=89.8
Q ss_pred cCCCcchHHHHHHHHhccCChHHHHHHHHHHH-------HcC------------CCCCChhhHHHH---HHHHHhcCChh
Q 038606 26 CFMSPGALGFLIRCLGSVGLVEEANMLFDQVK-------REG------------LCVPNNYSYNCL---LEALCKSCSVD 83 (666)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~------------~~~~~~~~~~~l---~~~~~~~g~~~ 83 (666)
.|.-.+.+..++.++..+|+.+-|..+.++.+ ... ..+.|..-|..+ ++.+.+.|.+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 45556677888899999999988888766554 110 012233333332 45677889999
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHH-hcCChhHHHHHHHHHHHcCC---CCchHHH-HHHHHHHhcCC---hhhHH
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYC-NSGQFDKALSVFNEIIDHGW---VDEHVFS-ILLVAFSKWGE---VDKAC 155 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~---~~~~~~~-~l~~~~~~~g~---~~~A~ 155 (666)
.|.++.+-+...++.-|+.....+|..|+ +..+|+--+++++.....+. .+...|. +++..|.+... .+.|.
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~ 439 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSAL 439 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHH
Confidence 99999999988877667777777776665 56788888888887755432 2333443 34444444443 45666
Q ss_pred HHHHHHhhC
Q 038606 156 ELIERMDDC 164 (666)
Q Consensus 156 ~~~~~~~~~ 164 (666)
..+.++...
T Consensus 440 ~~l~qAl~~ 448 (665)
T KOG2422|consen 440 NALLQALKH 448 (665)
T ss_pred HHHHHHHHh
Confidence 666666654
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.07 E-value=17 Score=28.64 Aligned_cols=23 Identities=9% Similarity=0.145 Sum_probs=11.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCC
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
++.+.++|+.++++.+.+.+..|
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCC
Confidence 33444555555555554444443
No 363
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.71 E-value=2.8 Score=36.15 Aligned_cols=59 Identities=19% Similarity=0.068 Sum_probs=51.7
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWG 98 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 98 (666)
....+.++.+.|.+++.++++.. |.....|..+....-++|+++.|.+.|++.++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~la--p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA--PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC--chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 45677899999999999999876 677889999999999999999999999999987655
No 364
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.55 E-value=1.3e+02 Score=36.74 Aligned_cols=153 Identities=13% Similarity=0.011 Sum_probs=103.4
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHH-HHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLE-ALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN 113 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (666)
.++++-.+.+.|.+|...|++-........-.+.+..++. .|...++++...-+...-.. ++.. ..-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHHh
Confidence 5777888899999999999984211100112234444444 89999999998888775211 2222 233444567
Q ss_pred cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHH-HHhhhccCCHHHHHHH
Q 038606 114 SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVL-IHGFVKKSRVDKALQL 192 (666)
Q Consensus 114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~ 192 (666)
.|++..|...|+.+.+.+|.....+..++......|.+...+-..+-..... .+....++.+ +.+-.+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8999999999999999998878888888888888888888887666665442 3334444433 3444677777777766
Q ss_pred HH
Q 038606 193 FD 194 (666)
Q Consensus 193 ~~ 194 (666)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 65
No 365
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.22 E-value=2.8 Score=38.62 Aligned_cols=93 Identities=8% Similarity=-0.084 Sum_probs=58.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHH
Q 038606 77 CKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACE 156 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (666)
...|.++.|++.|...++.+++ ....+..-.+++.+.+.+..|++=++.....++....-|-.-..+....|++++|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 3556677777777777665433 444455555666666777777777776666665555556666666666677777777
Q ss_pred HHHHHhhCCCCcch
Q 038606 157 LIERMDDCNIRLNE 170 (666)
Q Consensus 157 ~~~~~~~~~~~~~~ 170 (666)
.|....+.++.+..
T Consensus 204 dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 204 DLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHhccccHHH
Confidence 77777776654433
No 366
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.19 E-value=3.2 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=11.9
Q ss_pred HHHhhhccCChhHHHHHHHHHHh
Q 038606 211 IIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 211 l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
+..+|...|+.+.|..+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 367
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.17 E-value=3.5 Score=39.96 Aligned_cols=55 Identities=18% Similarity=0.053 Sum_probs=23.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 109 QVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 109 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
.++.+.+++..|+.=+.++++.+|.....|..-+.++.+.+.+.+|...|+....
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 3344444444444444444444433333333333344444444444444444443
No 368
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.00 E-value=0.83 Score=37.20 Aligned_cols=86 Identities=7% Similarity=0.030 Sum_probs=56.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038606 539 LLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKC 618 (666)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 618 (666)
.++..+.+.+.+.....+++.+...+. ..+....+.++..|++.++.++..++++.... .-...++..|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENK-ENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTST-C-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccc-ccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhc
Confidence 345666677778888888888876554 45566777888888888777777777762211 2223566777777
Q ss_pred CChhHHHHHHHHHH
Q 038606 619 DRPRAALVHFRMMK 632 (666)
Q Consensus 619 g~~~~A~~~~~~~~ 632 (666)
|.+++|.-++.++-
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 88888877777653
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.91 E-value=41 Score=30.67 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 038606 573 YTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMK 632 (666)
Q Consensus 573 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 632 (666)
++.....|..+|.+.+|.++.++....+ +.+...+..++..+...|+--.+.+.|+++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444555666666666666666666542 3355555566666666666555655555553
No 370
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.59 E-value=75 Score=33.52 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=11.8
Q ss_pred HHHHHHhhhccCChhHHHHHHHHHH
Q 038606 208 YDVIIGGLCKNKQLEMALQLYSEMK 232 (666)
Q Consensus 208 ~~~l~~~~~~~g~~~~a~~~~~~~~ 232 (666)
+..+|..+...|++++|-...-.|.
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3444444444555555544444443
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.28 E-value=33 Score=29.73 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=40.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
.-+..+.+.++..+|+...++-.+.. |.+......+.+.++-.|++++|...++-+-+.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l 64 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL 64 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhc
Confidence 34455566667777777777766665 566666777777777777777777777666554
No 372
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=81.27 E-value=5.4 Score=38.73 Aligned_cols=103 Identities=12% Similarity=-0.108 Sum_probs=76.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYC 112 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (666)
+-.-+......++++.|..+|.++++.+ |.....|..-..++.+.+++..|..=+.++++..+. -...|..-..++.
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVM 83 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHH
Confidence 3344566778889999999999999987 445556666668999999999999999999887643 2333333445556
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVF 138 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~ 138 (666)
..+.+.+|...|+......|.++.+.
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHH
Confidence 66788888888888888877665543
No 373
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.52 E-value=6.2 Score=25.19 Aligned_cols=28 Identities=21% Similarity=0.106 Sum_probs=20.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcC
Q 038606 33 LGFLIRCLGSVGLVEEANMLFDQVKREG 60 (666)
Q Consensus 33 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 60 (666)
+..++.++.+.|+++.|++..+.+++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4567777788888888888888888776
No 374
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.57 E-value=73 Score=31.54 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=25.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCCh
Q 038606 182 KKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQL 221 (666)
Q Consensus 182 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 221 (666)
..+.++...+.+..+...|.......++.-+..|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 4566777777777777666555555566666666666654
No 375
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.55 E-value=3.9 Score=21.88 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=17.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
+|..++..+...|+++.|...|++.++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4555666666667777777766666553
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.04 E-value=28 Score=31.49 Aligned_cols=87 Identities=14% Similarity=0.059 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHc----
Q 038606 436 IKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCK---- 511 (666)
Q Consensus 436 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 511 (666)
|++++..+++.+++...-+..+.--+..+.+...-|-.|.+.+++..+.++-.......-.-+...|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666677777777666555554322334455555566677788888777777776654222233346666655544
Q ss_pred -cCCHHHHHHHH
Q 038606 512 -AQRVAEAEDLF 522 (666)
Q Consensus 512 -~~~~~~a~~~~ 522 (666)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 58888887776
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.03 E-value=14 Score=25.81 Aligned_cols=57 Identities=5% Similarity=-0.134 Sum_probs=37.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNN-YSYNCLLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 92 (666)
..++.| .+...++|+..|..+++....+|+. .+...++++|...|++.++.++.-.-
T Consensus 12 ~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q 69 (80)
T PF10579_consen 12 KGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ 69 (80)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345545 6677888888888888775322222 24455667888888888877765433
No 378
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.93 E-value=24 Score=31.10 Aligned_cols=65 Identities=14% Similarity=-0.018 Sum_probs=53.3
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 038606 31 GALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGW 97 (666)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 97 (666)
..|.+..+++...|++-++++.-..++... |.|..+|..-+.+.+..=+..+|..=|..+++.++
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 345677888888889989988888888887 67888888888888888888888888888887643
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.91 E-value=7 Score=27.25 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=25.7
Q ss_pred HcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCChhHHHHHHH
Q 038606 582 IAGRPDDAIMLWNEMEEKGCAPN--RITFMALITGLCKCDRPRAALVHFR 629 (666)
Q Consensus 582 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 629 (666)
...+.++|+..|+...+.-..|. ..++..++.+++.-|++.+++.+.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655322211 2344555566666666666665543
No 380
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.85 E-value=1.8 Score=39.81 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=75.1
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHH
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQ 191 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 191 (666)
...|.++.|++.|...+..+|.....+..-.+++.+.++...|++=+....+.+.. ...-|-.--.+..-.|++++|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 36789999999999999998888888889999999999999999999999887532 22223222233345799999999
Q ss_pred HHHHHHhCCCCccHHHHH
Q 038606 192 LFDKMTKSGFASDAAMYD 209 (666)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~ 209 (666)
.|....+.+..+....|.
T Consensus 204 dl~~a~kld~dE~~~a~l 221 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATL 221 (377)
T ss_pred HHHHHHhccccHHHHHHH
Confidence 999999887666555443
No 381
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.62 E-value=1e+02 Score=32.68 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHhC
Q 038606 325 SSFDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNR-------LEESYELLREMEES 388 (666)
Q Consensus 325 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 388 (666)
...=.+|-.+.++|++++|.++....... .......+...+..|....+ -++...-|++..+.
T Consensus 112 ~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 112 DPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 33445677888999999999988554433 23445566777777766432 23455555555544
No 382
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.49 E-value=54 Score=29.46 Aligned_cols=131 Identities=10% Similarity=0.053 Sum_probs=62.1
Q ss_pred hhhHhhhhchHHHHHHHHhhhhcCCCcchHHH---HHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcC
Q 038606 4 ILSRARRIAPLRVLAQDVVKSRCFMSPGALGF---LIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSC 80 (666)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (666)
|+.+.++.+.|.++-++.+...+. +-.++.. +++.+. .+..+=++.++++.+.+ |.|-..|.---...-..|
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~--~dL~~El~~l~eI~e~n--pKNYQvWHHRr~ive~l~ 126 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLM--SDLNKELEYLDEIIEDN--PKNYQVWHHRRVIVELLG 126 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHhc
Confidence 455556666666666555553211 2222222 222222 24555566666666655 556555544333333344
Q ss_pred Chh-HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHH
Q 038606 81 SVD-LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSI 140 (666)
Q Consensus 81 ~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 140 (666)
++. .=.+..+.|+..+-+ +-.+|.----++..-+.++.-+..-.++++.+..+..+|+.
T Consensus 127 d~s~rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 127 DPSFRELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred CcccchHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence 444 444555555553222 33444333223333345666666666666655555555544
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.40 E-value=45 Score=29.00 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC--CcchhhHHHHHH
Q 038606 104 LTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI--RLNEKTFCVLIH 178 (666)
Q Consensus 104 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 178 (666)
....++.+.+.+++++|+...++-.+..|.+......+...++-.|++++|...++..-.... .+....|..++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 334455666777788888877777777777777777777888888888888777766655422 223344544443
No 384
>PRK10941 hypothetical protein; Provisional
Probab=77.20 E-value=24 Score=32.31 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=31.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCch
Q 038606 74 EALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEH 136 (666)
Q Consensus 74 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 136 (666)
.+|.+.++++.|....+.++...+. ++.-+.--.-.|.+.|.+..|..=++...+.-|.++.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 3455555555555555555554333 3333444444455555555555555555555444443
No 385
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.03 E-value=1e+02 Score=32.54 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=61.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCC--CchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccC
Q 038606 107 LLQVYCNSGQFDKALSVFNEIIDHGWV--DEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKS 184 (666)
Q Consensus 107 l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 184 (666)
-+.++.+.+.+++|...-+.....-+. ...++..++..+...|++++|-...-.|... +...|..-+..+...+
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD 437 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence 356667778888888776654443321 2345667777777888888888877777754 4555665565565555
Q ss_pred CHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhc
Q 038606 185 RVDKALQLFDKMTKSGFASDAAMYDVIIGGLCK 217 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (666)
+...... -++......+...|..++..+..
T Consensus 438 ~l~~Ia~---~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAP---YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence 5443322 22222112345567666666654
No 386
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=76.65 E-value=14 Score=27.53 Aligned_cols=80 Identities=19% Similarity=0.065 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 038606 44 GLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSV 123 (666)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 123 (666)
...++|..+.+.+...+ .-...+-...+..+...|+|++| +..-. ....||...|.+|-. .+.|-..++...
T Consensus 20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~-~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA---LLLPQ-CHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH---HHHHT-TS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH---HHhcc-cCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 45677777777777654 11222333344556777777777 22222 234456666655543 366777777777
Q ss_pred HHHHHHcC
Q 038606 124 FNEIIDHG 131 (666)
Q Consensus 124 ~~~~~~~~ 131 (666)
+.++...+
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 76665544
No 387
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.36 E-value=68 Score=30.02 Aligned_cols=151 Identities=17% Similarity=0.106 Sum_probs=76.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHh----cC
Q 038606 78 KSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCN----SGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSK----WG 149 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 149 (666)
..+++..+...+......+ +......+...|.. ..+..+|.++|......+ .+.....++..|.. ..
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g--~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG--LAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc--cHHHHHhHHHHHhcCCCccc
Confidence 4455666666666665422 22333334444432 234666777777555554 44445555555544 33
Q ss_pred ChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc-------CCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhh----cc
Q 038606 150 EVDKACELIERMDDCNIRLNEKTFCVLIHGFVKK-------SRVDKALQLFDKMTKSGFASDAAMYDVIIGGLC----KN 218 (666)
Q Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 218 (666)
+..+|...|+++.+.|..+...+...+...|... -+...|...+.+.-..+ +......+...|. -.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 6677777777777765332212233333333222 12336777777766654 2333333333332 23
Q ss_pred CChhHHHHHHHHHHhCCC
Q 038606 219 KQLEMALQLYSEMKGSGI 236 (666)
Q Consensus 219 g~~~~a~~~~~~~~~~~~ 236 (666)
.+.++|..+|....+.|.
T Consensus 205 ~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 466777777777766654
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.17 E-value=24 Score=34.62 Aligned_cols=67 Identities=13% Similarity=-0.143 Sum_probs=36.6
Q ss_pred CCcchHHHHHHHHhccCChHHHHHHHHHHHHcC--CC--CCC---hhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 28 MSPGALGFLIRCLGSVGLVEEANMLFDQVKREG--LC--VPN---NYSYNCLLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
.|+..+..-.+.+...|++..|.+++...--.. .+ .|. --.|+.|+..+.+.|.+..+..+|.++++
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALR 311 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHH
Confidence 355555556666666677777777665533221 00 111 11245566666666666666666666654
No 389
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.33 E-value=67 Score=29.48 Aligned_cols=119 Identities=8% Similarity=0.057 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHc-cC-ChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHH
Q 038606 533 SVATYNLLINGWCK-SG-NIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEK-GCAPNRITFM 609 (666)
Q Consensus 533 ~~~~~~~l~~~~~~-~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~ 609 (666)
|..+...+++.... .+ ....-.++.+-+....+..++..+...++..++..+++.+-.++|+..... +...|...|.
T Consensus 163 d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~ 242 (292)
T PF13929_consen 163 DEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWA 242 (292)
T ss_pred ChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHH
Confidence 44455555554433 11 223333344444433333566667777777777788888877777776654 4455677777
Q ss_pred HHHHHHHccCChhHHHHHHHH-----HHHcCCCCCHHHHHHHHHHHH
Q 038606 610 ALITGLCKCDRPRAALVHFRM-----MKEKGMKPDMFVFVALISAFL 651 (666)
Q Consensus 610 ~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 651 (666)
.+|......|+..-..++... +.+.+++.+...-..+-+.+.
T Consensus 243 ~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 243 EFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 777777777777666665554 233455555555555544443
No 390
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=75.06 E-value=1.1e+02 Score=31.99 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=19.9
Q ss_pred HHhhhhcCCCc-chHHHHHHHHhccCChHHHHHHHHH
Q 038606 20 DVVKSRCFMSP-GALGFLIRCLGSVGLVEEANMLFDQ 55 (666)
Q Consensus 20 ~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 55 (666)
+++....|... ..|-..+..+.-+|.++.|.+++..
T Consensus 137 ~vl~~~~p~~~~p~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 137 EVLSSEPPYEHDPDFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp TSCSS-HSCSGSHHHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred HHhccCCCCccchhHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34443444443 4555566777777888888777743
No 391
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=72.98 E-value=10 Score=20.62 Aligned_cols=25 Identities=4% Similarity=0.145 Sum_probs=11.1
Q ss_pred ChhHHHHHHHHHHHcCCCCchHHHH
Q 038606 116 QFDKALSVFNEIIDHGWVDEHVFSI 140 (666)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~ 140 (666)
+++.|..+|+++....|.++..|..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~ 26 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLK 26 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHH
Confidence 3444444454444444444444433
No 392
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=72.96 E-value=46 Score=30.21 Aligned_cols=90 Identities=13% Similarity=0.059 Sum_probs=60.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---
Q 038606 468 SAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGW--- 544 (666)
Q Consensus 468 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--- 544 (666)
..-|.+++..+++.+++...-+..+..-+..+......|-.|.+.+.+..+.++-....+.--.-+...|..++..|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34578889999999988776655443222233445555667889999999999888887752222333466655544
Q ss_pred --HccCChhHHHHHH
Q 038606 545 --CKSGNIDQAMLCL 557 (666)
Q Consensus 545 --~~~g~~~~a~~~~ 557 (666)
.-.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 5579999999887
No 393
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=72.68 E-value=21 Score=34.76 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 84 LVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEI 127 (666)
Q Consensus 84 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 127 (666)
+|.-+++......+. |...-..+++.|...|-...|.+.|..+
T Consensus 201 ~Ai~lLE~~l~~s~~-n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 201 QAIALLEHALKKSPH-NYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 344444544444322 4444444555555555555555555544
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.63 E-value=78 Score=28.99 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=17.8
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHH
Q 038606 99 YDKYTLTPLLQVYCNSGQFDKALSVF 124 (666)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 124 (666)
.++.....+...|.+.|++.+|+..|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 36677777788888888888877665
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.69 E-value=30 Score=26.82 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 038606 589 AIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEK 634 (666)
Q Consensus 589 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 634 (666)
..+-++.+...++.|++......+++|.+-+++..|+.+++-+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555555667777777777777777777777777777776653
No 396
>PRK10941 hypothetical protein; Provisional
Probab=71.13 E-value=28 Score=31.88 Aligned_cols=74 Identities=11% Similarity=-0.007 Sum_probs=59.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcchhhHHHHHH
Q 038606 105 TPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNI-RLNEKTFCVLIH 178 (666)
Q Consensus 105 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~ 178 (666)
+.+-.+|.+.++++.|+.+.+.+....|.++.-+.-.+..|.+.|.+..|..=++..++.-+ .|+.......+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 44667888999999999999999999999999899899999999999999999999877643 233333333333
No 397
>PRK09687 putative lyase; Provisional
Probab=70.56 E-value=91 Score=28.94 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=66.1
Q ss_pred ChhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHccC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038606 463 DIVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVVAYNIIISGLCKAQ-RVAEAEDLFNEMITKGLIPSVATYNLLI 541 (666)
Q Consensus 463 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 541 (666)
+..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.++++.+ ..+.+...+..+... ++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44444444555555554 3344444444432 23333344444444432 133455555555532 3555555556
Q ss_pred HHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038606 542 NGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLC 616 (666)
Q Consensus 542 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 616 (666)
.++.+.|+. .+...+-...+. ++ .....+.+....|.. +|...+..+.+. .||..+-...+.+|.
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666653 344444444433 12 123455566666664 566666666653 345555555555543
No 398
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.92 E-value=42 Score=29.53 Aligned_cols=93 Identities=13% Similarity=0.034 Sum_probs=54.2
Q ss_pred HHHccCChhHHHHHHHHHHhcC---CCCCCH--HhHHHHHHHHHHcCChh-------HHHHHHHHHHHcCCCC----CHH
Q 038606 543 GWCKSGNIDQAMLCLSRMLEKE---SGSPDV--ITYTTLIDGLCIAGRPD-------DAIMLWNEMEEKGCAP----NRI 606 (666)
Q Consensus 543 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~p----~~~ 606 (666)
-+.....+++|.+.+.-+.-.. ..++.. ..+..+.+.|-..|+.+ .|.+.|.+..+..-.| +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 4555667888888887664321 112332 23445566676667633 4555555555432221 222
Q ss_pred HH-HHHHHHHHccCChhHHHHHHHHHHHcC
Q 038606 607 TF-MALITGLCKCDRPRAALVHFRMMKEKG 635 (666)
Q Consensus 607 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 635 (666)
+. -.+.....+.|++++|.++|.++...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 33 334456668899999999999988665
No 399
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=69.00 E-value=15 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=9.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCC
Q 038606 111 YCNSGQFDKALSVFNEIIDHGWV 133 (666)
Q Consensus 111 ~~~~~~~~~A~~~~~~~~~~~~~ 133 (666)
+.+.|++++|.+..+.+++..|.
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHHhhhHHHHHHHHHHHHhhCCC
Confidence 33444444444444444444443
No 400
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.61 E-value=66 Score=28.90 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=35.9
Q ss_pred ChhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhcc-CChHHHHHHHHHHHH
Q 038606 1 MASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSV-GLVEEANMLFDQVKR 58 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 58 (666)
||+|...++|++++......+...++.+|.+-.+.+..+|-.. |....+.+.+..+.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 4677777777777777777777777777777777777666432 444555555554443
No 401
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.00 E-value=9 Score=25.51 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 038606 586 PDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKE 633 (666)
Q Consensus 586 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 633 (666)
.+...++++.++.. +-|..-...+|.++...|++++|.++++.+.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555655542 23445555677888888888888888887764
No 402
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=67.77 E-value=15 Score=33.48 Aligned_cols=80 Identities=4% Similarity=-0.125 Sum_probs=50.0
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHH
Q 038606 63 VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTP-LLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSIL 141 (666)
Q Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 141 (666)
+.|+..|...+.--.+.|.+.+.-.+|.++.+.+|. |...|.. --.-|.-.++++.++.+|...+.-++.+|..|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 556666666666666667777777777777766443 5555533 12234456777777777777777777667666544
Q ss_pred HH
Q 038606 142 LV 143 (666)
Q Consensus 142 ~~ 143 (666)
..
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 403
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.33 E-value=47 Score=24.45 Aligned_cols=45 Identities=20% Similarity=0.156 Sum_probs=23.8
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 038606 14 LRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKR 58 (666)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 58 (666)
.+.-++.+...+.+..|.....+.-.|.+.|+.+.|.+-|+.=..
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa 100 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA 100 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh
Confidence 333444444545555555555555555555665655555554443
No 404
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=66.91 E-value=1.9e+02 Score=31.10 Aligned_cols=88 Identities=13% Similarity=0.035 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCChhHHHHHHHHHHhcCCCCCCHH-hHHHHHHHHHHcCChhHHHHH
Q 038606 515 VAEAEDLFNEMITKGLIPSVATYNLLINGW-CKSGNIDQAMLCLSRMLEKESGSPDVI-TYTTLIDGLCIAGRPDDAIML 592 (666)
Q Consensus 515 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 592 (666)
+..|...|.........+...+.......+ .-+++++.++.+|+.+...+. -+.. .|...++.-...|+...+..+
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~--~~iag~Wle~~~lE~~~g~~~~~R~~ 519 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG--GSIAGKWLEAINLEREYGDGPSARKV 519 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc--chHHHHHHHHHhHHHHhCCchhHHHH
Confidence 344555555444332222222333333332 345778888888888876654 3333 555555555666888888887
Q ss_pred HHHHHHcCCCCC
Q 038606 593 WNEMEEKGCAPN 604 (666)
Q Consensus 593 ~~~~~~~~~~p~ 604 (666)
++.....-..|+
T Consensus 520 ~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 520 LRKAYSQVVDPE 531 (881)
T ss_pred HHHHHhcCcCch
Confidence 777765544443
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.73 E-value=1e+02 Score=28.08 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHH-------HHHHhhhccCCHHHHHHHHHH----HHhCCCCccHHHHH
Q 038606 141 LLVAFSKWGEVDKACELIERMDDCNIRLNEKTFC-------VLIHGFVKKSRVDKALQLFDK----MTKSGFASDAAMYD 209 (666)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~~~~ 209 (666)
+++-..+.+++++|+..+.++...|+..+..+.+ .+...|...|+...-.+.... |....-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHhhhccCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHHHHhcCC
Q 038606 210 VIIGGLCKNKQ-LEMALQLYSEMKGSGITPDFEILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRILVSNGS 288 (666)
Q Consensus 210 ~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (666)
+++..+-...+ ++....+.....+.........+.. ..-..++..+.+.|.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~----------------------------~Le~Kli~l~y~~~~ 140 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRL----------------------------ELECKLIYLLYKTGK 140 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHhccc
Q ss_pred HHHHHHHHHHHHh
Q 038606 289 IDQAYNLLQAMIK 301 (666)
Q Consensus 289 ~~~A~~~~~~~~~ 301 (666)
+.+|+.+...+..
T Consensus 141 YsdalalIn~ll~ 153 (421)
T COG5159 141 YSDALALINPLLH 153 (421)
T ss_pred HHHHHHHHHHHHH
No 406
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=66.59 E-value=53 Score=24.72 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHH
Q 038606 116 QFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDK 195 (666)
Q Consensus 116 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 195 (666)
..++|..+.+.+...+.....+-...+..+...|+|++| +..-... ..||...|-+|.. .+.|-.+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 345555555555444332222333333444555555555 1111111 2344444444332 244555555555555
Q ss_pred HHhCC
Q 038606 196 MTKSG 200 (666)
Q Consensus 196 ~~~~~ 200 (666)
+...|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 44433
No 407
>PRK12798 chemotaxis protein; Reviewed
Probab=65.95 E-value=1.4e+02 Score=29.23 Aligned_cols=86 Identities=19% Similarity=0.119 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCChhhHHHHHHHH-HhcCChhHHHHHHHHHHhcCCC--CCcccHHHHHHHHHhcCChhHH
Q 038606 44 GLVEEANMLFDQVKREGLCVPNNYSYNCLLEAL-CKSCSVDLVEMRLKEMQDYGWG--YDKYTLTPLLQVYCNSGQFDKA 120 (666)
Q Consensus 44 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A 120 (666)
|+-++|.+.+..+..... |+....+..|+.+. ....+...|.+.|+.+.=.-|. ...-.+..-+-...+.|+.+++
T Consensus 126 Gr~~~a~~~La~i~~~~l-~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 126 GRGREARKLLAGVAPEYL-PAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred CCHHHHHHHhhcCChhhc-CchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 555555555555554443 44445555555443 2333555555555555332111 0111122222333455555555
Q ss_pred HHHHHHHHHc
Q 038606 121 LSVFNEIIDH 130 (666)
Q Consensus 121 ~~~~~~~~~~ 130 (666)
..+-.+...+
T Consensus 205 ~~la~~Y~rR 214 (421)
T PRK12798 205 EALARNYLRR 214 (421)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.93 E-value=19 Score=23.97 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHh
Q 038606 186 VDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKG 233 (666)
Q Consensus 186 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 233 (666)
++...++++.+... .-|..---.+|.++...|++++|.++++++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444432 23333344456666677777777766666654
No 409
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.93 E-value=96 Score=27.44 Aligned_cols=18 Identities=6% Similarity=0.272 Sum_probs=9.6
Q ss_pred hcCChhHHHHHHHHHHhC
Q 038606 371 NSNRLEESYELLREMEES 388 (666)
Q Consensus 371 ~~~~~~~a~~~~~~~~~~ 388 (666)
..+++.+|+++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555556665555444
No 410
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.87 E-value=43 Score=24.66 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=9.2
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 038606 110 VYCNSGQFDKALSVFNEII 128 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~ 128 (666)
.....|++++|.+.++++.
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3344455555555555444
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=65.49 E-value=42 Score=24.13 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=5.8
Q ss_pred CChhhHHHHHHHHh
Q 038606 149 GEVDKACELIERMD 162 (666)
Q Consensus 149 g~~~~A~~~~~~~~ 162 (666)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 412
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=63.75 E-value=1.5e+02 Score=28.92 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHH
Q 038606 151 VDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMY 208 (666)
Q Consensus 151 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 208 (666)
+-+|.-+++...... +.|...--.++..|...|-.+.|.+.|..+.-+.+.-|...|
T Consensus 199 l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h 255 (365)
T PF09797_consen 199 LLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGH 255 (365)
T ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHH
Confidence 445555566665554 234444555666666677777777777665544444444433
No 413
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=63.61 E-value=2.1e+02 Score=30.46 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 038606 278 SIMRILVSNGSIDQAYNLLQAMIKG 302 (666)
Q Consensus 278 ~l~~~~~~~~~~~~A~~~~~~~~~~ 302 (666)
.++--+.++|++++|.++.......
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~ 140 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ 140 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh
Confidence 4566788999999999999554443
No 414
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.59 E-value=71 Score=28.14 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=10.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 038606 72 LLEALCKSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 72 l~~~~~~~g~~~~A~~~~~~~~~ 94 (666)
++....+.|++++|..+|.++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHc
Confidence 33344444444444444444444
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.23 E-value=54 Score=26.67 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=38.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038606 592 LWNEMEEKGCAPNRITFMALITGLCKCDRPRAALVHFRMMKEKGMKPDMFVFVALISAFLSELN 655 (666)
Q Consensus 592 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 655 (666)
+.+.+.+.|+++++.= ..++..+...++.-.|.++++.+.+.+.+.+..|.+..++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3445555666655433 24555566666667777777777776545556666666666666663
No 416
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=62.65 E-value=2.2e+02 Score=30.55 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=78.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH---HHhcCChhhHHHHHHHHhhCCCCcchhhHHHH
Q 038606 100 DKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA---FSKWGEVDKACELIERMDDCNIRLNEKTFCVL 176 (666)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 176 (666)
+...+..|+..+.+.|++++....-.++...-|.++..|...+.. ....++...+..+|++.......+ ..|.-.
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v--~iw~e~ 189 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSV--PIWEEV 189 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccc--hHHHHH
Confidence 445566777888888988888888888888888888887655552 233477888888888887654333 333333
Q ss_pred HHh-------hhccCCHHHHHHHHHHHHhC-CCCc--cHHHHHHHH---HhhhccCChhHHHHHHHHHHhC
Q 038606 177 IHG-------FVKKSRVDKALQLFDKMTKS-GFAS--DAAMYDVII---GGLCKNKQLEMALQLYSEMKGS 234 (666)
Q Consensus 177 ~~~-------~~~~~~~~~A~~~~~~~~~~-~~~~--~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~ 234 (666)
+.. +.+.++++..+.+|++.++. |... ....|.... ..|..+-..+....++..-+..
T Consensus 190 ~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 190 VNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 322 23346677778888876642 2111 122233222 2333333345555666555544
No 417
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.55 E-value=1.2e+02 Score=27.41 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=108.8
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCC
Q 038606 38 RCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKS-CSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQ 116 (666)
Q Consensus 38 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (666)
..+++..+-+.|+++-+.++..+ |.+-..|.---..+-.. .+..+=.+++.++.+.+++ |-.+|.--=......|+
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lN--pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLN--PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGD 127 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhC--cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcC
Confidence 34556667789999999988877 56666555443333322 2466777888888887665 66666543333344567
Q ss_pred hh-HHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhc-cCCHH-----HH
Q 038606 117 FD-KALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVK-KSRVD-----KA 189 (666)
Q Consensus 117 ~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-----~A 189 (666)
+. .-++..+.+...+..+-.+|..---++...+.++.-+.+..++++.++. |..+||.-.-.... .|-.+ .-
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~E 206 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERE 206 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHH
Confidence 66 6677778888877667778877777777788899999999999888754 45566643322222 12111 11
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhh
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGLC 216 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (666)
+.+...+.. .+|.+...|+-|...+.
T Consensus 207 l~yt~~~I~-~vP~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 207 LNYTKDKIL-LVPNNESAWNYLKGLLE 232 (318)
T ss_pred HHHHHHHHH-hCCCCccHHHHHHHHHH
Confidence 222222222 23667777887765554
No 418
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.83 E-value=1.2e+02 Score=27.29 Aligned_cols=275 Identities=16% Similarity=0.186 Sum_probs=157.3
Q ss_pred CCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHhC---CC--C
Q 038606 321 SPNTSSFDIIINT-LLKDGKLDLALSLFREMTQIGCMQNVFL---YNNLIDGLCNSNRLEESYELLREMEES---GF--K 391 (666)
Q Consensus 321 ~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~ 391 (666)
.||+..-+..-.. -.+...+++|+.-|.+..+........- ...++....+.+++++..+.|.++..- .+ .
T Consensus 23 EpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN 102 (440)
T KOG1464|consen 23 EPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN 102 (440)
T ss_pred CCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 5665554433222 1244578899999999887653333333 345678888999999999988887532 11 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----C-
Q 038606 392 PTHFTLNSMFRCLCRRQDVVGALNLVRKMRV-----QGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEGF----L- 461 (666)
Q Consensus 392 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~- 461 (666)
-+..+.++++..-..+.+.+.....++.-+. .+-..+-.+-..+...|...+++....++++++..+-. .
T Consensus 103 ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 103 YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCch
Confidence 2455677777766666666655555543222 12234445556778888888888888888888765411 1
Q ss_pred ------CChhhHHHHHHHHHccCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHH-----HccCCHHHHHH-HHHHHHH-
Q 038606 462 ------PDIVCYSAAIGGLIDIKRVDLALELFRDICAH-GCCPDVVAYNIIISGL-----CKAQRVAEAED-LFNEMIT- 527 (666)
Q Consensus 462 ------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~-----~~~~~~~~a~~-~~~~~~~- 527 (666)
.-...|..-+..|...++-.....+|++.... ..-|.+.... .+.-| .+.|++++|.. +|+.+..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 11245666677777777777777788776532 1234444443 33333 45678887754 3443332
Q ss_pred --CCCCCCHHH---HHHHHHHHHccCC--hhHHHHHHHHHHhcCC--CCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 528 --KGLIPSVAT---YNLLINGWCKSGN--IDQAMLCLSRMLEKES--GSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 528 --~~~~p~~~~---~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
.|- |...+ |..+.+.+.+.|- ++. .+..| ..|.....+.++.+|-. ++..+-.+++..-.+
T Consensus 262 DEsGs-pRRttCLKYLVLANMLmkS~iNPFDs--------QEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 262 DESGS-PRRTTCLKYLVLANMLMKSGINPFDS--------QEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS 331 (440)
T ss_pred cccCC-cchhHHHHHHHHHHHHHHcCCCCCcc--------cccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc
Confidence 342 33222 4445555555541 111 01111 23566677788888754 455555555554433
Q ss_pred cCCCCCHHH
Q 038606 599 KGCAPNRIT 607 (666)
Q Consensus 599 ~~~~p~~~~ 607 (666)
. +-.|+.+
T Consensus 332 ~-IM~DpFI 339 (440)
T KOG1464|consen 332 N-IMDDPFI 339 (440)
T ss_pred c-ccccHHH
Confidence 2 3334433
No 419
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.82 E-value=40 Score=29.15 Aligned_cols=34 Identities=9% Similarity=-0.149 Sum_probs=19.2
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038606 99 YDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
|++.++..++.++...|+.++|.++..++...-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555555555555556666666665555555543
No 420
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.69 E-value=1.4e+02 Score=27.54 Aligned_cols=66 Identities=6% Similarity=0.052 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHHHHH
Q 038606 530 LIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIMLWNE 595 (666)
Q Consensus 530 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 595 (666)
-.++..+...++..++..+++.+-.++++..........|...|..+++.....|+..-..++..+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 455666777777777788888887777777665522256677788888887788876655555544
No 421
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.41 E-value=54 Score=30.59 Aligned_cols=94 Identities=10% Similarity=-0.054 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHH
Q 038606 68 SYNCLLEALCKSCSVDLVEMRLKEMQDYGWG---YDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVA 144 (666)
Q Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 144 (666)
.|.-=++-|.+..+|..|...|.+-++.... .+.+.|+.-..+-...|++..|+.=...+....|.+.-++..-+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444455555566666666666555543221 2223333333333344555555555555555555444444444444
Q ss_pred HHhcCChhhHHHHHHHH
Q 038606 145 FSKWGEVDKACELIERM 161 (666)
Q Consensus 145 ~~~~g~~~~A~~~~~~~ 161 (666)
+.....+..|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 55444444444444443
No 422
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.90 E-value=65 Score=25.11 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC
Q 038606 517 EAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 517 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
+..+-++.+..-.+.|++.+...-+.++-+-+|+..|..+|+-+..+.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 3444555555556667777777777777777777777777777665544
No 423
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=59.69 E-value=1.3e+02 Score=26.73 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC-----------CCCCHHhHHHHH
Q 038606 509 LCKAQRVAEAEDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKES-----------GSPDVITYTTLI 577 (666)
Q Consensus 509 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~~~~~l~ 577 (666)
|.+..+.+--.++.+-....+++-+...+.+++ +...||..+|+..++.-....+ ..|++.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444433344444444444554444454443 4467788887777766543221 157777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038606 578 DGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCK 617 (666)
Q Consensus 578 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 617 (666)
..|. .+++++|.+++.++-+.|+.|.. ..+.+.+++-.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~ 284 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVVKN 284 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHh
Confidence 7665 46899999999999999988754 33455665543
No 424
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.97 E-value=40 Score=31.00 Aligned_cols=80 Identities=5% Similarity=0.058 Sum_probs=64.3
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHH-HHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHH
Q 038606 97 WGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSI-LLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCV 175 (666)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 175 (666)
...|+..|...+....+.|.+.+...+|.+..+.+|.+.+.|.. -..-+...++++.+..+|...++.+. .++..|..
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~-~~p~iw~e 181 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS-RSPRIWIE 181 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC-CCchHHHH
Confidence 34488888888877778899999999999999999999888865 44567788999999999999998763 35566654
Q ss_pred HH
Q 038606 176 LI 177 (666)
Q Consensus 176 l~ 177 (666)
..
T Consensus 182 yf 183 (435)
T COG5191 182 YF 183 (435)
T ss_pred HH
Confidence 44
No 425
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.96 E-value=1.8e+02 Score=27.41 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHccCChhHHHHHHHHHHhcCC--CCCCHHhH--HHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 541 INGWCKSGNIDQAMLCLSRMLEKES--GSPDVITY--TTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 541 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
+...-+.++.++|+++++++.+.-. ..|+...| ..+.+++...|+..++.+.+.+..+
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344455567777777776654321 13444443 2344555566777777777666655
No 426
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=55.95 E-value=41 Score=31.13 Aligned_cols=59 Identities=10% Similarity=-0.047 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038606 71 CLLEALCKSCSVDLVEMRLKEMQDYGWGYD-KYTLTPLLQVYCNSGQFDKALSVFNEIID 129 (666)
Q Consensus 71 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 129 (666)
.|.-+..+.|+..+|.+.++.+.+.-+-.. -.+.-.++.++....-+.....++-+.-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344445566777777777766655311100 11233455666555555555555554443
No 427
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.99 E-value=86 Score=23.34 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=6.0
Q ss_pred ccCCHHHHHHHHHH
Q 038606 182 KKSRVDKALQLFDK 195 (666)
Q Consensus 182 ~~~~~~~A~~~~~~ 195 (666)
..|++++|..+.+.
T Consensus 51 NrG~Yq~Al~l~~~ 64 (115)
T TIGR02508 51 NRGDYQSALQLGNK 64 (115)
T ss_pred ccchHHHHHHhcCC
Confidence 34444444444433
No 428
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=54.79 E-value=30 Score=31.83 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=32.3
Q ss_pred ccHH-HHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHH
Q 038606 203 SDAA-MYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILS 244 (666)
Q Consensus 203 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (666)
||.. .|+..|....+.||.++|++++++.++.|+.--..+|.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4444 46688889999999999999999999988765554443
No 429
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.34 E-value=1.4e+02 Score=25.41 Aligned_cols=26 Identities=15% Similarity=0.381 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038606 277 NSIMRILVSNGSIDQAYNLLQAMIKG 302 (666)
Q Consensus 277 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 302 (666)
...+-.|.+.|.+++|.+++++....
T Consensus 115 ~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 115 EQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 34566799999999999999999873
No 430
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.17 E-value=3.3e+02 Score=29.76 Aligned_cols=224 Identities=16% Similarity=0.093 Sum_probs=120.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHH
Q 038606 333 TLLKDGKLDLALSLFREMTQIGCMQNV-------FLYNNLID-GLCNSNRLEESYELLREMEES----GFKPTHFTLNSM 400 (666)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 400 (666)
......++++|..++.++...-..|+. ..|+.|-. .....|++++|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445678899999998887654322221 12333322 234578899999888777554 122344556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHH---H--HHHHHhcCCH--HHHHHHHHHHHHcCC--CC----ChhhH
Q 038606 401 FRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTL---L--IKELCKHGKA--MEAFRFLTDMVQEGF--LP----DIVCY 467 (666)
Q Consensus 401 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~--~~a~~~~~~~~~~~~--~~----~~~~~ 467 (666)
..+..-.|++++|..+..+..+.....+...+.. + ...+...|+. .+....+........ .| -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7788889999999998887765432233333222 2 1234556632 222333333222100 11 12333
Q ss_pred HHHHHHHHccCChHHHHHHHHH----HHhcCCCccHHH--HHHHHHHHHccCCHHHHHHHHHHHHHCCCCC----CHHHH
Q 038606 468 SAAIGGLIDIKRVDLALELFRD----ICAHGCCPDVVA--YNIIISGLCKAQRVAEAEDLFNEMITKGLIP----SVATY 537 (666)
Q Consensus 468 ~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~ 537 (666)
..++.++.+ ++.+..-... .......|-... +..++......|+.++|...+.++......+ +...-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 3333322222 222211222222 2367778888999999999999887753332 22222
Q ss_pred HHHHH--HHHccCChhHHHHHHHH
Q 038606 538 NLLIN--GWCKSGNIDQAMLCLSR 559 (666)
Q Consensus 538 ~~l~~--~~~~~g~~~~a~~~~~~ 559 (666)
...+. .....|+..++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 33467888887777665
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.58 E-value=67 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=16.6
Q ss_pred CCHHhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 568 PDVITYTTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 568 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
|++..+..++.++...|+.++|.+..+++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555555555544
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.68 E-value=29 Score=30.35 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=30.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
.+.++.+.|.+++.++...-|.+...|..+.....+.|+++.|.+.+++..+.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 344555556666666555555555555555555555566666666665555543
No 433
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.65 E-value=5.5e+02 Score=31.94 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038606 394 HFTLNSMFRCLCRRQDVVGALNLVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQEG 459 (666)
Q Consensus 394 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 459 (666)
..+|....+.....|.++.|....-...+.+ -+..+-..+....+.|+...|+.+++...+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 3467777777777888888877776666554 33445556677778888888888888877553
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=52.21 E-value=93 Score=22.88 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=8.3
Q ss_pred HHccCChhHHHHHHHHHH
Q 038606 544 WCKSGNIDQAMLCLSRML 561 (666)
Q Consensus 544 ~~~~g~~~~a~~~~~~~~ 561 (666)
....|++++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334444444444444443
No 435
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.04 E-value=1.7e+02 Score=28.82 Aligned_cols=152 Identities=20% Similarity=0.166 Sum_probs=75.9
Q ss_pred HhhhhchHHHHHHHHhhhhcCCC---cchHHH-HH-------------HHHhccCChHHHHHHHHHHHHcCCCCCChhhH
Q 038606 7 RARRIAPLRVLAQDVVKSRCFMS---PGALGF-LI-------------RCLGSVGLVEEANMLFDQVKREGLCVPNNYSY 69 (666)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-l~-------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 69 (666)
|.++|+.=..++.-+++...|.+ |..+.+ ++ +.-..... ++-.+.+ .+.+...-+...-
T Consensus 3 R~~Sw~nYc~LF~~iL~s~~p~~l~LPn~WlwDiiDEFvYQfqsfc~yr~~~~~~~-~~e~~~l---~~~~~~~W~~~~V 78 (404)
T PF10255_consen 3 RFESWDNYCELFNYILNSDGPVNLELPNQWLWDIIDEFVYQFQSFCQYRSKLKKKT-EEEIQLL---KENNPDVWNVYSV 78 (404)
T ss_pred hHHHHHHHHHHHHHHhCCCCCcccCCCcHHHHHHHHHHHHHhhhHHHHhhhccCCC-HHHHHHH---HhhccCcccHHHH
Confidence 56778888888888887654332 222211 11 11111122 2222222 2221112344455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh-----cCCCCC-------cccHHHHHHHHHhcCChhHHHHHHHHHHHcC------
Q 038606 70 NCLLEALCKSCSVDLVEMRLKEMQD-----YGWGYD-------KYTLTPLLQVYCNSGQFDKALSVFNEIIDHG------ 131 (666)
Q Consensus 70 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 131 (666)
...+.++....++.+-.+..+.... .+.... -.+...|++..+-.||+..|+++++.+.-..
T Consensus 79 LnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~ 158 (404)
T PF10255_consen 79 LNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTK 158 (404)
T ss_pred HHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhcc
Confidence 5556666666666665555544211 111111 1223345666667788888888777653211
Q ss_pred --CCCchHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 132 --WVDEHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 132 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
+....++..++-+|.-.+++.+|.+.|..++
T Consensus 159 V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 159 VPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred CcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123445566666666666767766666654
No 436
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.99 E-value=1.9e+02 Score=28.38 Aligned_cols=59 Identities=14% Similarity=-0.004 Sum_probs=40.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCChh--hHHHHHHHHH--hcCChhHHHHHHHHHHhc
Q 038606 35 FLIRCLGSVGLVEEANMLFDQVKREGLCVPNNY--SYNCLLEALC--KSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 35 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 95 (666)
..++.+.+.+++..|.++|+.+.+. . +++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~r-l-~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRR-L-PGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh-C-CchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3566777888999999999888876 2 44443 4455555553 455777888888887664
No 437
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.87 E-value=2.3e+02 Score=26.98 Aligned_cols=84 Identities=11% Similarity=-0.025 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHcCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 038606 45 LVEEANMLFDQVKREGLC---VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKAL 121 (666)
Q Consensus 45 ~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 121 (666)
=.+.|.+.|......+.. +.++.....+.....+.|+.+.-..+++..... ++......++.+.+-..+.+...
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHH
Confidence 345566666665553211 113333444444555555544444444433321 23444455555555556666666
Q ss_pred HHHHHHHHcC
Q 038606 122 SVFNEIIDHG 131 (666)
Q Consensus 122 ~~~~~~~~~~ 131 (666)
++++.+...+
T Consensus 222 ~~l~~~l~~~ 231 (324)
T PF11838_consen 222 RLLDLLLSND 231 (324)
T ss_dssp HHHHHHHCTS
T ss_pred HHHHHHcCCc
Confidence 6666666543
No 438
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.82 E-value=1.8e+02 Score=33.07 Aligned_cols=142 Identities=15% Similarity=-0.033 Sum_probs=80.7
Q ss_pred HhhhhcCCCcchH--HHHHHHHhccCChHHHHH------HHHHHHHcCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 038606 21 VVKSRCFMSPGAL--GFLIRCLGSVGLVEEANM------LFDQVKREGLCVPNNYSYNCLLEALCKSCSVDLVEMRLKEM 92 (666)
Q Consensus 21 ~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 92 (666)
+++++.|.+.+.. ..-.+.....|.+.+|.+ ++...-..-. |+...-|..+...+.+.|+.++|..+-.+.
T Consensus 921 ~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h-~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka 999 (1236)
T KOG1839|consen 921 VIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLH-PEVASKYRSLAKLSNRLGDNQEAIAQQRKA 999 (1236)
T ss_pred ccccCCCccchhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcc-hhHHHHHHHHHHHHhhhcchHHHHHhcccc
Confidence 3444555443333 344455666677777776 6664333221 566677888888888999998888876544
Q ss_pred H-------hcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC---CCchHHHHHHHHHHhcCChhhHHHH
Q 038606 93 Q-------DYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH-----GW---VDEHVFSILLVAFSKWGEVDKACEL 157 (666)
Q Consensus 93 ~-------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~---~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (666)
. ..+.+.+...+..+......+++...|...+...... ++ ....++..+...+...++++.|.++
T Consensus 1000 ~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1000 CIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred eeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 2 2222223344555555555666777777776665542 22 1122233344444455667777777
Q ss_pred HHHHhh
Q 038606 158 IERMDD 163 (666)
Q Consensus 158 ~~~~~~ 163 (666)
++.+..
T Consensus 1080 le~A~a 1085 (1236)
T KOG1839|consen 1080 LESALA 1085 (1236)
T ss_pred HHHHHH
Confidence 766654
No 439
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=50.78 E-value=3.2e+02 Score=28.72 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHhcCChhhHHHHHHHH
Q 038606 135 EHVFSILLVAFSKWGEVDKACELIERM 161 (666)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (666)
+.-|. .+..+.-.|.++.|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 44454 566666677777777777443
No 440
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.19 E-value=95 Score=22.43 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=21.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhH
Q 038606 113 NSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKA 154 (666)
Q Consensus 113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (666)
..|+.+.|.+++..+. ++ +..|...+.++...|.-.-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg---~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK---EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC---CcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 43 33455555555555544333
No 441
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.82 E-value=1.1e+02 Score=34.74 Aligned_cols=116 Identities=12% Similarity=-0.009 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHH-------HcCCCCCChhhHHHHHHHHHhcCChhHHH
Q 038606 14 LRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVK-------REGLCVPNNYSYNCLLEALCKSCSVDLVE 86 (666)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (666)
+..++..+...--|....-|..+++.+.+.|+.++|...-..+. ..+. +.+...|..+.......++...|.
T Consensus 957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds-~~t~~~y~nlal~~f~~~~~~~al 1035 (1236)
T KOG1839|consen 957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS-PNTKLAYGNLALYEFAVKNLSGAL 1035 (1236)
T ss_pred hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC-HHHHHHhhHHHHHHHhccCccchh
Confidence 33377777776666678888999999999999999998665433 2231 344556777777777888888888
Q ss_pred HHHHHHHhc-----CC--CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038606 87 MRLKEMQDY-----GW--GYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDH 130 (666)
Q Consensus 87 ~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 130 (666)
..+.++... |. ++...+.+.+-..+...++++.|++..+.+.+.
T Consensus 1036 ~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1036 KSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred hhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 888777553 22 223334444444455558999999999888763
No 442
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=49.57 E-value=2.6e+02 Score=27.24 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 038606 498 DVVAYNIIISGLCKAQRVAEAEDLFNEMI 526 (666)
Q Consensus 498 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 526 (666)
.+.++..+...+.+.|+.+.|.+++++.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555566666666666666555543
No 443
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.96 E-value=4.5e+02 Score=29.86 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=38.9
Q ss_pred HHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHhhhccCcHHHHHHHHHhhCCCCCccchHHHHHHH
Q 038606 207 MYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDF----EILSKLITSCSDEGELTLLVKEIWEDRDVNTMTLLCNSIMRI 282 (666)
Q Consensus 207 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (666)
.|...++.+-+.+-.|.+.++-..+.+. +.++. -+.+.+++-....|.+.++...+...++.+........++-.
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3556666677777777777776666553 22221 123333333444444444444444444333333334444444
Q ss_pred HHhcCC
Q 038606 283 LVSNGS 288 (666)
Q Consensus 283 ~~~~~~ 288 (666)
+.++|.
T Consensus 1064 Lfecg~ 1069 (1480)
T KOG4521|consen 1064 LFECGE 1069 (1480)
T ss_pred HHhccc
Confidence 444443
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=48.95 E-value=2.4e+02 Score=27.75 Aligned_cols=56 Identities=11% Similarity=0.129 Sum_probs=36.1
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCCccHH--HHHHHHHHHH--ccCCHHHHHHHHHHHHHC
Q 038606 472 GGLIDIKRVDLALELFRDICAHGCCPDVV--AYNIIISGLC--KAQRVAEAEDLFNEMITK 528 (666)
Q Consensus 472 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 528 (666)
..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888776 555444 3344444443 356677888888877654
No 445
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=48.46 E-value=1.4e+02 Score=23.82 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 038606 103 TLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDE 135 (666)
Q Consensus 103 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 135 (666)
++..++-.....|+++.|+.+.+-++.++..-|
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P 82 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMP 82 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCCCcc
Confidence 444555566677777777777777777765443
No 446
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=47.64 E-value=1.7e+02 Score=28.83 Aligned_cols=25 Identities=12% Similarity=0.047 Sum_probs=12.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHH
Q 038606 608 FMALITGLCKCDRPRAALVHFRMMK 632 (666)
Q Consensus 608 ~~~l~~~~~~~g~~~~A~~~~~~~~ 632 (666)
+-.+.-+|.-.+++.+|++.|....
T Consensus 167 ~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 167 YYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 447
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=47.11 E-value=3.9e+02 Score=28.56 Aligned_cols=106 Identities=10% Similarity=0.074 Sum_probs=63.0
Q ss_pred CCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCC-----CCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 038606 27 FMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGL-----CVPNN-YSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYD 100 (666)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 100 (666)
.+++++...++-.|....+|+...++-+.+..... -.++. +.|...++---+-|+-++|....-.+++..-+.-
T Consensus 198 VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 198 VLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred ccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 34677777888888888888888888888776420 00111 2233333333456777778877777766533323
Q ss_pred cccHHHHHHH---------HHhcCChhHHHHHHHHHHHcCC
Q 038606 101 KYTLTPLLQV---------YCNSGQFDKALSVFNEIIDHGW 132 (666)
Q Consensus 101 ~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~~~~ 132 (666)
+..+....+. |...+..+.|.++|+++.+..|
T Consensus 278 pDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP 318 (1226)
T KOG4279|consen 278 PDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEP 318 (1226)
T ss_pred CceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCc
Confidence 3333222222 2234567778888888777665
No 448
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.90 E-value=2.5e+02 Score=26.32 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=8.6
Q ss_pred ccCCHHHHHHHHHHHHH
Q 038606 511 KAQRVAEAEDLFNEMIT 527 (666)
Q Consensus 511 ~~~~~~~a~~~~~~~~~ 527 (666)
+.|+..+|.+.++++.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 34555555555555444
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.23 E-value=2.3e+02 Score=30.76 Aligned_cols=185 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHHHHHhcCCh
Q 038606 3 SILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLEALCKSCSV 82 (666)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (666)
.+..-.++.+++.++.+...--| ..++..+.+.|-.+-|+.+-+.=...... +...|+.
T Consensus 601 KlALi~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~L-------------aLe~gnl 659 (1202)
T KOG0292|consen 601 KLALLNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFEL-------------ALECGNL 659 (1202)
T ss_pred HHHHHhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchheee-------------ehhcCCH
Q ss_pred hHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHh
Q 038606 83 DLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMD 162 (666)
Q Consensus 83 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (666)
+.|.+...++ .+..+|..|+.....+|+.+-|...|++... |..+.-.|.-.|+.++-.++-..+.
T Consensus 660 e~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 660 EVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHHHHH
Q ss_pred hCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhhhccCChhHHHHHHHHHHhCCCC
Q 038606 163 DCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGLCKNKQLEMALQLYSEMKGSGIT 237 (666)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 237 (666)
.+ +..+-.-....| .|+.++-.++++..- ..+..-..... .|.-+.|.++.++....+..
T Consensus 726 ~r----~D~~~~~qnalY--l~dv~ervkIl~n~g----~~~laylta~~-----~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 726 IR----NDATGQFQNALY--LGDVKERVKILENGG----QLPLAYLTAAA-----HGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred hh----hhhHHHHHHHHH--hccHHHHHHHHHhcC----cccHHHHHHhh-----cCcHHHHHHHHHhhccccCC
No 450
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.40 E-value=2.5e+02 Score=25.81 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHH
Q 038606 272 MTLLCNSIMRILVSNGSIDQAYNLL 296 (666)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~A~~~~ 296 (666)
++..+..+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3456666667777777777666555
No 451
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.71 E-value=1.7e+02 Score=23.78 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=44.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHhcCC----CCCCHHhHHHHHHHHHHcCC-hhHHHHHHHHHHHcCCCCCHHHHHHH
Q 038606 537 YNLLINGWCKSGNIDQAMLCLSRMLEKES----GSPDVITYTTLIDGLCIAGR-PDDAIMLWNEMEEKGCAPNRITFMAL 611 (666)
Q Consensus 537 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l 611 (666)
.+.++.-....+++.-...+++.+....+ ...+..+|.+++.+...... .--+..+|+-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444455544444444422111 02334456666666644444 33456667777766677777777777
Q ss_pred HHHHHcc
Q 038606 612 ITGLCKC 618 (666)
Q Consensus 612 ~~~~~~~ 618 (666)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7777654
No 452
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.64 E-value=3.7e+02 Score=28.70 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=27.5
Q ss_pred hhhhHhhhhc-------hHHHHHHHHh-hhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHH
Q 038606 3 SILSRARRIA-------PLRVLAQDVV-KSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKR 58 (666)
Q Consensus 3 ~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 58 (666)
+|+||+.++. +..+.+..+. +.+...+.+.+..+++. ..|+...|+.+++++..
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~--A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA--AQGSMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Confidence 5666766653 2222222222 23445555555444332 45777777777766543
No 453
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.54 E-value=3.1e+02 Score=26.76 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 038606 326 SFDIIINTLLKDGKLDLALSLFREMTQIGCMQ---NVFLYNNLIDGLCNSNRLEESYELLREMEE 387 (666)
Q Consensus 326 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 387 (666)
.+.-+...|..+|+++.|++.|.++...- .. ....|-.+|..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYC-Ts~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYC-TSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhh-cchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45556666777777777777776644321 11 222333444444555666666665555544
No 454
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.47 E-value=1.7e+02 Score=23.76 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHcC---C--CCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCHHHHHH
Q 038606 572 TYTTLIDGLCIAGRPDDAIMLWNEMEEKG---C--APNRITFMALITGLCKCDR-PRAALVHFRMMKEKGMKPDMFVFVA 645 (666)
Q Consensus 572 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ 645 (666)
..++++.-....+++...+.+++.+.-.. + ..+..+|..++.+.....- --.+..++.-+.+.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 35667766677788888888887774310 0 2356678899988876655 4457778888888888999999999
Q ss_pred HHHHHHhc
Q 038606 646 LISAFLSE 653 (666)
Q Consensus 646 l~~~~~~~ 653 (666)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99988775
No 455
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.35 E-value=5.3e+02 Score=29.36 Aligned_cols=167 Identities=11% Similarity=0.065 Sum_probs=97.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhh---------cCCCCC--C--HHHHHHHHHHHHhcCChHHHH
Q 038606 278 SIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIF---------KGTVSP--N--TSSFDIIINTLLKDGKLDLAL 344 (666)
Q Consensus 278 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~--~~~~~~l~~~~~~~g~~~~a~ 344 (666)
.+..+|...|...+|++.|.+......... .+.....+ ++..+. . ..-|..+++.+-+.+-.+.+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vc 1003 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVC 1003 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHH
Confidence 344457889999999999998876543222 22222221 222222 2 234677888888999999988
Q ss_pred HHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHH-----
Q 038606 345 SLFREMTQIGC---MQNVFLYNNLIDGLCNSNRLEESYELLREMEESGFKPTHF----TLNSMFRCLCRRQDVVG----- 412 (666)
Q Consensus 345 ~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~----- 412 (666)
++-..+.+.-. +.-..+++.+.+.....|.+.+|...+-. .||.. ....++..++.+|.++.
T Consensus 1004 QlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfecg~l~~L~~fp 1077 (1480)
T KOG4521|consen 1004 QLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFECGELEALATFP 1077 (1480)
T ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhccchHHHhhCC
Confidence 88777665421 11234566677777777877777655433 34443 45566666677776543
Q ss_pred -------HHH-HHHHHHHcCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 038606 413 -------ALN-LVRKMRVQGHEPWVKHNTLLIKELCKHGKAMEAFRF 451 (666)
Q Consensus 413 -------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 451 (666)
... +++.............|..+...+...+++.+|-.+
T Consensus 1078 figl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1078 FIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred ccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 333 333333333233444566666666777888776544
No 456
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.22 E-value=4.3e+02 Score=28.26 Aligned_cols=181 Identities=15% Similarity=0.179 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCC---hhhHHHHHHHHHccCChHHHHHHHHHHHhcCCCccHH----------HHHHHHHHHHccCCHH
Q 038606 450 RFLTDMVQEGFLPD---IVCYSAAIGGLIDIKRVDLALELFRDICAHGCCPDVV----------AYNIIISGLCKAQRVA 516 (666)
Q Consensus 450 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~~ 516 (666)
..+.+|.+.--.|+ ..+...++-.|....+++..+++.+.+.+. ||.. .|...++---+-|+-+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHH
Confidence 34445544322232 344555566666666777777777666553 2211 1222223233456667
Q ss_pred HHHHHHHHHHHC--CCCCCHHHH-----HHH--HHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChh
Q 038606 517 EAEDLFNEMITK--GLIPSVATY-----NLL--INGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPD 587 (666)
Q Consensus 517 ~a~~~~~~~~~~--~~~p~~~~~-----~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 587 (666)
+|+.+.-.+.+. .+.||.... .-+ -..|...+..+.|.++|++..+..|..-+-..+..|+.+-. ..++
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG--~~Fe 338 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAG--EHFE 338 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhh--hhcc
Confidence 777666666554 233443321 111 11233445567778888877766432222223333333322 1233
Q ss_pred HHHHHHHH------HH-HcCCCCCHHHH---HHHHHHHHccCChhHHHHHHHHHHHcC
Q 038606 588 DAIMLWNE------ME-EKGCAPNRITF---MALITGLCKCDRPRAALVHFRMMKEKG 635 (666)
Q Consensus 588 ~A~~~~~~------~~-~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~ 635 (666)
...++-.- +. ++|.-.+...| ...+.+-.-++++.+|++..+.|.+.+
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccC
Confidence 33222211 11 11211111111 122333345678888888888887654
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.17 E-value=3.2e+02 Score=26.73 Aligned_cols=62 Identities=11% Similarity=0.015 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038606 396 TLNSMFRCLCRRQDVVGALNLVRKMRVQGH--EPWVKHNTLLIKELCKHGKAMEAFRFLTDMVQ 457 (666)
Q Consensus 396 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 457 (666)
.+.-+...|..+|+++.|.+.|.+...--. .-.+..+..++..-.-.|+|........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455666677777777777777776543211 11223334444444445556555555555544
No 458
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=44.05 E-value=49 Score=30.34 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=46.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 038606 112 CNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCN 165 (666)
Q Consensus 112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (666)
.+.|+.++|..+|+.+....|.++.+...++......+++-+|-++|-+++..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 367899999999999999999999998888888888888888988888887654
No 459
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.50 E-value=4.8e+02 Score=28.58 Aligned_cols=55 Identities=24% Similarity=0.203 Sum_probs=35.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 038606 106 PLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 106 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (666)
.+-..|...|+|++|.+.-..-+.. -..++..-+..+.+.+++..|.+++.++.+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~---le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDA---LETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 3556677788888887764332110 112445555677788888888888888743
No 460
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.93 E-value=4e+02 Score=27.50 Aligned_cols=120 Identities=11% Similarity=-0.055 Sum_probs=68.8
Q ss_pred ccCChHHHHHHHHHHHHcCC----------CCCChhhHHHHHHHHHhcCChhHHHHHHHHH-------HhcCCCCC----
Q 038606 42 SVGLVEEANMLFDQVKREGL----------CVPNNYSYNCLLEALCKSCSVDLVEMRLKEM-------QDYGWGYD---- 100 (666)
Q Consensus 42 ~~~~~~~A~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~---- 100 (666)
....|++|.+.|.-+..... .|-...+...+..++..+|+.+.|..+.++. ..-.+.|.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 34567889998888776642 0122334555566788889887776665554 32222211
Q ss_pred ---------cccHH---HHHHHHHhcCChhHHHHHHHHHHHcCCC-CchHHHHHHHHHH-hcCChhhHHHHHHHH
Q 038606 101 ---------KYTLT---PLLQVYCNSGQFDKALSVFNEIIDHGWV-DEHVFSILLVAFS-KWGEVDKACELIERM 161 (666)
Q Consensus 101 ---------~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 161 (666)
..-|. ..|+-+.+.|-+.-|.++.+-+.+.+|. ||.....++..|+ +..+++-.+++++..
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 11111 1234445567777777777777777665 6666666555443 445566666666555
No 461
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=42.27 E-value=3e+02 Score=25.94 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=65.0
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC---CCCCH
Q 038606 495 CCPDVVAYNIIISGLCKAQRVAEAEDLFNEMITK-GLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLEKES---GSPDV 570 (666)
Q Consensus 495 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ 570 (666)
+..|...++.|..+ +....++-.+..++..+. |-.--...+.....-|++-||-+.|.+.+.+..++.. .+.|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34455555554432 223334444444444443 2111223455556677888888888877776654421 14444
Q ss_pred HhHHH-HHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHH
Q 038606 571 ITYTT-LIDGLCIAGRPDDAIMLWNEMEEKGCAPNR----ITFMALITGLCKCDRPRAALVHFRMMK 632 (666)
Q Consensus 571 ~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 632 (666)
..+.. +.-.|....-..+-++..+.+.+.|-..+. .+|..+- |....++.+|-.+|-...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 33322 122233333344555555556666654432 2232221 334566777777766654
No 462
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.14 E-value=70 Score=29.01 Aligned_cols=64 Identities=13% Similarity=-0.116 Sum_probs=0.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHcCC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 038606 32 ALGFLIRCLGSVGLVEEANMLFDQVKREGL----CVPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDY 95 (666)
Q Consensus 32 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 95 (666)
+-..+++.|...|++++|.++|+.+..... ......+...+..++.+.|+.+....+.-++..+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls~ 247 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLSR 247 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
No 463
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.01 E-value=65 Score=29.76 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=31.4
Q ss_pred CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038606 321 SPNTSS-FDIIINTLLKDGKLDLALSLFREMTQIGCMQNVFLYN 363 (666)
Q Consensus 321 ~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (666)
.++..+ |+..|....+.||+++|+.++++..+.|+..-..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 345544 5578888888899999999998888888655444443
No 464
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=41.32 E-value=3.2e+02 Score=25.93 Aligned_cols=33 Identities=24% Similarity=0.101 Sum_probs=14.9
Q ss_pred hhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHh
Q 038606 8 ARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLG 41 (666)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 41 (666)
.+-.++++.+-.-+..- .|.-|++...++-.+.
T Consensus 209 a~Lc~EairLgRll~~L-~p~EPE~~GL~ALmll 241 (415)
T COG4941 209 ADLCDEAIRLGRLLARL-LPGEPEALGLLALMLL 241 (415)
T ss_pred chHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHH
Confidence 34444555444333332 2335666655444433
No 465
>PRK09462 fur ferric uptake regulator; Provisional
Probab=41.32 E-value=2e+02 Score=23.52 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 038606 586 PDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDR 620 (666)
Q Consensus 586 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 620 (666)
.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44455555555444433344443333444444443
No 466
>PRK12798 chemotaxis protein; Reviewed
Probab=40.91 E-value=3.7e+02 Score=26.52 Aligned_cols=195 Identities=14% Similarity=0.118 Sum_probs=105.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HccCChHHHHHHHHHHHhcCCCccHH----HHHHHHHHHHccCCH
Q 038606 441 KHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIGGL-IDIKRVDLALELFRDICAHGCCPDVV----AYNIIISGLCKAQRV 515 (666)
Q Consensus 441 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~ 515 (666)
-.|+..++.+.+..+.....++....+-.|+.+- ....++..|+.+|+...-. .|... ....-+....+.|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 3678888888888777666566666666666543 3456788888888876543 33322 233334455677888
Q ss_pred HHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCCHHhHHHHHHHHHHcCChhHHHHH
Q 038606 516 AEAEDLFNEMITKGLIPSVA---TYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPDVITYTTLIDGLCIAGRPDDAIML 592 (666)
Q Consensus 516 ~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 592 (666)
+++..+-.+...+ +..+++ .+..+..++.+.++-..-.. +..+...-...--...|..+.+.-...|+.+.|.-.
T Consensus 202 ~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 7766665555554 222222 23334445555543322222 333333221022234677777777777888877777
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCC
Q 038606 593 WNEMEEKGCAPNR-ITFMALITG--LCKCDRPRAALVHFRMMKEKGMKPD 639 (666)
Q Consensus 593 ~~~~~~~~~~p~~-~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~ 639 (666)
-++.....-..+. ..-..+-.+ -.-..+++++.+.+..+-...+.+.
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 7776653211111 111111111 1234567777777777766555543
No 467
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.82 E-value=89 Score=19.43 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=13.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 038606 583 AGRPDDAIMLWNEMEEKGCAPNRITFMAL 611 (666)
Q Consensus 583 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 611 (666)
.|-..++...+++|.+.|+..++..+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444444444444444444444333
No 468
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.71 E-value=1.8e+02 Score=22.94 Aligned_cols=87 Identities=15% Similarity=0.032 Sum_probs=50.4
Q ss_pred HHhccCChHHHHHHHHHHHHcCCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhc
Q 038606 39 CLGSVGLVEEANMLFDQVKREGLC---VPNNYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDK-YTLTPLLQVYCNS 114 (666)
Q Consensus 39 ~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 114 (666)
.+-..+.-..-..+++++...... -.|..-|..+=-.|++ ..+.+.++|..|...++.... .-|......+...
T Consensus 35 ~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~ 112 (126)
T PF08311_consen 35 NYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKR 112 (126)
T ss_dssp HCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHT
T ss_pred HCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHc
Confidence 333344445555555555544310 0122223333223333 334899999999988877544 4556667778888
Q ss_pred CChhHHHHHHHHH
Q 038606 115 GQFDKALSVFNEI 127 (666)
Q Consensus 115 ~~~~~A~~~~~~~ 127 (666)
|++.+|.++|...
T Consensus 113 ~~~~~A~~I~~~G 125 (126)
T PF08311_consen 113 GNFKKADEIYQLG 125 (126)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 469
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=40.35 E-value=1.1e+02 Score=20.39 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=28.0
Q ss_pred hccCCHHHHHHHHHHHHhCCCCccHHHHHHHHHhh-----hccCChhHHHHHH
Q 038606 181 VKKSRVDKALQLFDKMTKSGFASDAAMYDVIIGGL-----CKNKQLEMALQLY 228 (666)
Q Consensus 181 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~a~~~~ 228 (666)
...|++=+|-++++.+-.....+....+..+|+.. .+.|+...|..++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 35777778888888776433234455565555543 3567777666553
No 470
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.27 E-value=61 Score=22.65 Aligned_cols=17 Identities=6% Similarity=-0.044 Sum_probs=10.0
Q ss_pred hcCChhHHHHHHHHHHh
Q 038606 78 KSCSVDLVEMRLKEMQD 94 (666)
Q Consensus 78 ~~g~~~~A~~~~~~~~~ 94 (666)
..|++++|..+|...++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 45566666666655544
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.13 E-value=1.7e+02 Score=23.81 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=8.9
Q ss_pred HHHHHhcCChhhHHHHHHHHhhC
Q 038606 142 LVAFSKWGEVDKACELIERMDDC 164 (666)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~ 164 (666)
+..+...++.-.|.++++.+.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~ 49 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREE 49 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 33333333334444444444433
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.66 E-value=3e+02 Score=26.29 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhCCCCccH----HHHHHHHHhhhccCChhHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Q 038606 185 RVDKALQLFDKMTKSGFASDA----AMYDVIIGGLCKNKQLEMALQLYSEMKGSGITPDFEILSKLITSC 250 (666)
Q Consensus 185 ~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 250 (666)
-.++++.+++.+.+. -|++ ..|-+++......|.++.++.+|+++...|..|-...-..++...
T Consensus 118 p~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 118 PKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred CHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 345777788877765 4554 468888999999999999999999999999998776555555443
No 473
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=39.63 E-value=86 Score=28.86 Aligned_cols=60 Identities=7% Similarity=-0.065 Sum_probs=40.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchH
Q 038606 77 CKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHV 137 (666)
Q Consensus 77 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 137 (666)
.+.|+.++|..+|+.+....+. ++.++..+....-..++.-+|-++|-+++..+|.+..+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 4667777777777777776544 56666666666666677777777777777766655444
No 474
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.47 E-value=2.5e+02 Score=24.13 Aligned_cols=23 Identities=9% Similarity=0.037 Sum_probs=12.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 038606 576 LIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
++..|-+..++.+..++++.|.+
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666554
No 475
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.78 E-value=2e+02 Score=22.99 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHhcCC
Q 038606 497 PDVVAYNIIISGLCKAQ---RVAEAEDLFNEMITKGLIP-SVATYNLLINGWCKSGNIDQAMLCLSRMLEKES 565 (666)
Q Consensus 497 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 565 (666)
++..+--.+..++.+.. +..+.+.+++++.+...+. .......|.-++.+.+++++++++.+.+.+..+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 34444444555555544 3455667777776522111 122333445567777777777777777776643
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.74 E-value=2.2e+02 Score=24.01 Aligned_cols=48 Identities=10% Similarity=-0.024 Sum_probs=25.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChh
Q 038606 575 TLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPR 622 (666)
Q Consensus 575 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 622 (666)
.++..+...++.-.|.++++.+.+.+..++..|...-+..+...|-..
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344444444555566666666666555555555555555555555443
No 477
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=38.48 E-value=1.7e+02 Score=21.93 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 038606 331 INTLLKDGKLDLALSLFREMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEESG 389 (666)
Q Consensus 331 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 389 (666)
+..+...|++++|..+.+... .||...|-+|. -.+.|..+++..-+..|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 445667788888877766652 47777776554 235566666666666666655
No 478
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.06 E-value=46 Score=26.29 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=20.1
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038606 582 IAGRPDDAIMLWNEMEEKGCAPNRITFMALITG 614 (666)
Q Consensus 582 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 614 (666)
..|.-.+|-.+|++|.+.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34666777777888877776666 34555543
No 479
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.15 E-value=3e+02 Score=24.42 Aligned_cols=100 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred CCCCHHhHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHHHH--HHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH
Q 038606 566 GSPDVITYTTLIDGLCIAGRPDDAIMLWNEMEEKGC-APNRITF--MALITGLCKCDRPRAALVHFRMMKEKGMKPDMFV 642 (666)
Q Consensus 566 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 642 (666)
..+...-+|.|+--|.-...+.+|.+.|..-..-.. ..+..++ ..-|......|+.++|++....+.-.-+.-|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Q ss_pred HHHHHHHHH----hcCChhhHHHHHhh
Q 038606 643 FVALISAFL----SELNPPLAFEVLKE 665 (666)
Q Consensus 643 ~~~l~~~~~----~~g~~~~A~~~~~~ 665 (666)
+..+..--. +.|+.++|+++.+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
No 480
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.97 E-value=2.7e+02 Score=26.40 Aligned_cols=95 Identities=17% Similarity=0.132 Sum_probs=60.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHhcCCCCCC--HHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 038606 536 TYNLLINGWCKSGNIDQAMLCLSRMLEKESGSPD--VITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPN-RITFMALI 612 (666)
Q Consensus 536 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 612 (666)
.|.-=.+-|.+..++..|...|.+-+......|| .+.|++-..+-...|++..|+.=....+.. .|+ ...|-.=.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhhhh
Confidence 4444556677777788888888777665443443 345666666666677777777777666653 443 33343334
Q ss_pred HHHHccCChhHHHHHHHHHH
Q 038606 613 TGLCKCDRPRAALVHFRMMK 632 (666)
Q Consensus 613 ~~~~~~g~~~~A~~~~~~~~ 632 (666)
.++....++++|..+.+...
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 55566677777777777654
No 481
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=36.96 E-value=5.9e+02 Score=27.80 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=9.9
Q ss_pred HhcCChHHHHHHHHHHHH
Q 038606 335 LKDGKLDLALSLFREMTQ 352 (666)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~ 352 (666)
.-+|.++.|+..+.....
T Consensus 479 lLsgqfe~AI~fL~~~~~ 496 (835)
T KOG2168|consen 479 LLSGQFERAIEFLHREEP 496 (835)
T ss_pred HHHHhHHHHHHHHHhhcC
Confidence 334566666666655543
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.83 E-value=2.8e+02 Score=26.04 Aligned_cols=157 Identities=11% Similarity=0.080 Sum_probs=79.9
Q ss_pred cchHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCcccHHHH
Q 038606 30 PGALGFLIRCLGSVGLVEEANMLFDQVKREGL-CVPN-NYSYNCLLEALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPL 107 (666)
Q Consensus 30 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 107 (666)
...+..+.....-..+...|........+.=. ...+ ..+-..++..+.+.++.....+.++.+.. .......
T Consensus 60 ~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~ 133 (291)
T PF10475_consen 60 DSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSR 133 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 33444444444444455555544433332200 0011 12244456666777777777777666643 2223445
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC--CCCchHHHHHHHHHHhc-CCh-hhHHHHHHHHhhCCCCcchhhHHHHHHhhhcc
Q 038606 108 LQVYCNSGQFDKALSVFNEIIDHG--WVDEHVFSILLVAFSKW-GEV-DKACELIERMDDCNIRLNEKTFCVLIHGFVKK 183 (666)
Q Consensus 108 ~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 183 (666)
++.+...|+|..|++++.+..+.- ...-.+...+..-+... ... +.....|..+.. ..|+..|..+..+|.-.
T Consensus 134 l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lL 210 (291)
T PF10475_consen 134 LQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLL 210 (291)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHH
Confidence 666678899999999988765531 11111122221111100 000 011122233322 46888999999999999
Q ss_pred CCHHHHHHHHHH
Q 038606 184 SRVDKALQLFDK 195 (666)
Q Consensus 184 ~~~~~A~~~~~~ 195 (666)
|+...+.+-+..
T Consensus 211 gk~~~~~dkl~~ 222 (291)
T PF10475_consen 211 GKTQSAMDKLQM 222 (291)
T ss_pred hhhHHHHHHHHH
Confidence 987776654444
No 483
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.42 E-value=49 Score=26.15 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=10.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCC
Q 038606 79 SCSVDLVEMRLKEMQDYGWGYD 100 (666)
Q Consensus 79 ~g~~~~A~~~~~~~~~~~~~~~ 100 (666)
.|.-..|..+|++|++.|.+||
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc
Confidence 3444445555555555544443
No 484
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.40 E-value=3.3e+02 Score=24.35 Aligned_cols=98 Identities=10% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHH
Q 038606 110 VYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKA 189 (666)
Q Consensus 110 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 189 (666)
++...+++++|.+.+... ...++-...++.++...|+...|..++....... .+......++.. ..++.+.+|
T Consensus 87 W~LD~~~~~~A~~~L~~p----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 87 WLLDHGDFEEALELLSHP----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HHhChHhHHHHHHHhCCC----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHH
Confidence 344567777777776221 1223334567777777788888888777654321 122222333333 556777777
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHhhhc
Q 038606 190 LQLFDKMTKSGFASDAAMYDVIIGGLCK 217 (666)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (666)
..+-....+. .....+..++..+..
T Consensus 160 f~~~R~~~~~---~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 160 FSFQRSYPDE---LRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHhCchh---hhHHHHHHHHHHHHH
Confidence 7766654431 113355555555553
No 485
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=35.11 E-value=92 Score=17.93 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=8.5
Q ss_pred HHHHHhccCChHHHHHH
Q 038606 36 LIRCLGSVGLVEEANML 52 (666)
Q Consensus 36 l~~~~~~~~~~~~A~~~ 52 (666)
++-.+...|++++|+++
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 34444555555555555
No 486
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=35.08 E-value=2.3e+02 Score=22.41 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHh
Q 038606 622 RAALVHFRMMKEKGMKPD-MFVFVALISAFLSELNPPLAFEVLK 664 (666)
Q Consensus 622 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 664 (666)
++..++|..|...+|-.. +..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345667777777665544 4556666677777788888877775
No 487
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=34.35 E-value=3.1e+02 Score=25.64 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHh
Q 038606 519 EDLFNEMITKGLIPSVATYNLLINGWCKSGNIDQAMLCLSRMLE 562 (666)
Q Consensus 519 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 562 (666)
.++++.+.+.++.|....+..+.-.+.+.=.+...+.+|+.+..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35566666666666666666555555555566666666666653
No 488
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.01 E-value=3.8e+02 Score=24.75 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHHhcCC---CCCCHHhHHHHHH---HHHHcCChhHHHHHHHHHHHcCCCCCH--
Q 038606 534 VATYNLLINGWCKSGNIDQAMLCLSRMLEKES---GSPDVITYTTLID---GLCIAGRPDDAIMLWNEMEEKGCAPNR-- 605 (666)
Q Consensus 534 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~p~~-- 605 (666)
...+..+..-|++-++.+.+.++..+..+... .+.|+ +.+.++ .|....-.++.++..+.+.+.|-..+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv--~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV--FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh--HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 44566666777777777777776666554321 12332 222222 233333345666666667766644332
Q ss_pred --HHHHHHHHHHHccCChhHHHHHHHHHH
Q 038606 606 --ITFMALITGLCKCDRPRAALVHFRMMK 632 (666)
Q Consensus 606 --~~~~~l~~~~~~~g~~~~A~~~~~~~~ 632 (666)
.+|..+ -+....++.+|-.++....
T Consensus 193 RyK~Y~Gi--~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 193 RYKVYKGI--FKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred hHHHHHHH--HHHHHHhhHHHHHHHHHHh
Confidence 222211 1233455666666665554
No 489
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.96 E-value=3.6e+02 Score=24.10 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=61.5
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 69 YNCLLEAL--CKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 69 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
+...++++ ...+++++|...+-. +...+.-...++.++...|+...|..++...... ..++.....+... .
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~-----ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~-l~s~~~~~~~~~~-L 151 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH-----PSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP-LSSPEALTLYFVA-L 151 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC-----CCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC-CCCHHHHHHHHHH-H
Confidence 44455554 455677777777622 2222233446888888899999999988764322 2344444444444 6
Q ss_pred hcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhh
Q 038606 147 KWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFV 181 (666)
Q Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 181 (666)
.+|.+.+|...-+...+.. ....+..++..+.
T Consensus 152 a~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 7788888888776665521 2345555555544
No 490
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.30 E-value=2.3e+02 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHH
Q 038606 573 YTTLIDGLCIAGRPDDAIMLWNEMEE 598 (666)
Q Consensus 573 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 598 (666)
|..|+..|...|..++|+++|.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777777665
No 491
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.26 E-value=7.8e+02 Score=27.81 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=159.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhhcCCCCCCHHHHH---HHHHHHHhcCC---hHHHHHHHH
Q 038606 275 LCNSIMRILVSNGSIDQAYNLLQAMIKGEPIADVGVEMLMIFKGTVSPNTSSFD---IIINTLLKDGK---LDLALSLFR 348 (666)
Q Consensus 275 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~---~~~a~~~~~ 348 (666)
.+..+-+++...+.++.|+..|+++...-+....+. ...+. +++.-....|+ +++|+.-|+
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (932)
T PRK13184 477 SCLAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY-------------EAQFRLGITLLEKASEQGDPRDFTQALSEFS 543 (932)
T ss_pred ecccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch-------------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHH
Confidence 344555788888999999999999988763222111 11122 22333333344 677777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHH------HH--------------HHHHHHHH--
Q 038606 349 EMTQIGCMQNVFLYNNLIDGLCNSNRLEESYELLREMEES-GFKPTHF------TL--------------NSMFRCLC-- 405 (666)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~------~~--------------~~l~~~~~-- 405 (666)
.+... +.-+--|-.-.-+|-+.|++++-.+.+.-..++ ...|-.. +| .-++-+..
T Consensus 544 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (932)
T PRK13184 544 YLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIA 621 (932)
T ss_pred HhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 77543 223333433344577888888777766665544 1122111 11 11111110
Q ss_pred -hcCCHHHHHHHHHHHHHcC-------CCCchhh-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038606 406 -RRQDVVGALNLVRKMRVQG-------HEPWVKH-----NTLLIKELCKHGKAMEAFRFLTDMVQEGFLPDIVCYSAAIG 472 (666)
Q Consensus 406 -~~~~~~~a~~~~~~~~~~~-------~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 472 (666)
..-....-.++|+.+...- ..+.+.. +..++. | -.|..---..+++.+... ++..+...+..
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 696 (932)
T PRK13184 622 PEKISSREEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLS-F-WSGFTPFLPELFQRAWDL---RDYRALADIFY 696 (932)
T ss_pred cccccchHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHH-H-HhcCchhhHHHHHHHhhc---ccHHHHHHHHH
Confidence 0111122233444333221 0111111 111111 1 123333444555555543 34455555555
Q ss_pred HHHccCChHHHHHHHHHHHhc----CCCccH--------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHH--HHH
Q 038606 473 GLIDIKRVDLALELFRDICAH----GCCPDV--------VAYNIIISGLCKAQRVAEAEDLFNEMITKGLIPSVA--TYN 538 (666)
Q Consensus 473 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~ 538 (666)
+.+..|.++-+.+....+... ..+.+. ..|-.-+.+......++++.+.+... +|... .+.
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 771 (932)
T PRK13184 697 VACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFD 771 (932)
T ss_pred HHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHH
Confidence 667788888777766655431 111111 11233344455555566665533332 33333 223
Q ss_pred HHHHHHHccCChhHHHHHHHHHHhcCCCCCC-HHhHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Q 038606 539 LLINGWCKSGNIDQAMLCLSRMLEKESGSPD-VITYTTLIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLC- 616 (666)
Q Consensus 539 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~- 616 (666)
.++.-..-.++.+.-..+.+.+......... .......+.+|.-..++++|-++++.....-.. +..+...++.+|.
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 850 (932)
T PRK13184 772 LFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLL-DEYSEAFVLYGCYL 850 (932)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhc-cccchHHHHHHHHH
Confidence 3333333344555444444444333220111 123345677888888999999998765442122 2222223333332
Q ss_pred -ccCChhHHHHHHHHHHH
Q 038606 617 -KCDRPRAALVHFRMMKE 633 (666)
Q Consensus 617 -~~g~~~~A~~~~~~~~~ 633 (666)
-.++-+.|...|...++
T Consensus 851 ~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 851 ALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HhcCchhHHHHHHhhccc
Confidence 45666777777776663
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.77 E-value=1.1e+02 Score=20.73 Aligned_cols=46 Identities=9% Similarity=0.202 Sum_probs=21.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 038606 101 KYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAFS 146 (666)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (666)
....+.++..+++..-.+.++..+++....+..+.+.|..-.+.++
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLA 53 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3344444444444445555555555555554444444444444333
No 493
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.22 E-value=5.9e+02 Score=26.02 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred hhhhHhhhh--------chHHHHHHHHhhhhcCCCcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHHH
Q 038606 3 SILSRARRI--------APLRVLAQDVVKSRCFMSPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLLE 74 (666)
Q Consensus 3 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 74 (666)
+|++|+..+ +-...+-.-+...|...+++++..+++... |+...|+.+++++.... ...-++..+..
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~--Gd~RdAL~lLeq~i~~~---~~~it~~~V~~ 241 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD--GSVRDMLSFMEQAIVFT---DSKLTGVKIRK 241 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--ChHHHHHHHHHHHHHhC---CCCcCHHHHHH
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 038606 75 ALCKSCSVDLVEMRLKEMQDYGWGYDKYTLTPLLQVYCNSGQFDKALSVFNEIIDHGWVDEHVFSILLVAF 145 (666)
Q Consensus 75 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (666)
.+ |.. +...+..++......+....|+.+++++...|.........++..+
T Consensus 242 ~l-------------------g~~-~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~ 292 (484)
T PRK14956 242 MI-------------------GYH-GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFT 292 (484)
T ss_pred Hh-------------------CCC-CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
No 494
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=31.16 E-value=1.7e+02 Score=19.86 Aligned_cols=43 Identities=19% Similarity=-0.004 Sum_probs=22.4
Q ss_pred CcchHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCChhhHHHHH
Q 038606 29 SPGALGFLIRCLGSVGLVEEANMLFDQVKREGLCVPNNYSYNCLL 73 (666)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 73 (666)
..+.|..-...+..+|++++|.++-....+-- -.+..|...+-
T Consensus 5 ad~l~~~~F~~l~~~g~y~eAA~~AA~sP~gi--LRt~~Ti~rFk 47 (66)
T PF13838_consen 5 ADDLYVQQFNELFSQGQYEEAAKVAANSPRGI--LRTPETINRFK 47 (66)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHSGGGT--T-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhCccch--hcCHHHHHHHH
Confidence 44455556666677777777776665554432 23444444433
No 495
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=2.2e+02 Score=26.09 Aligned_cols=54 Identities=15% Similarity=-0.005 Sum_probs=29.1
Q ss_pred HHHhcCChhhHHHHHHHHhhCCCCcchhhHHHHHHhhhccCCHHHHHHHHHHHHh
Q 038606 144 AFSKWGEVDKACELIERMDDCNIRLNEKTFCVLIHGFVKKSRVDKALQLFDKMTK 198 (666)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 198 (666)
.+.+.++++.|....++....+ +.|+..+.--..+|.+.|...-|++-++...+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 5555566666666666665553 22443444444455566666666655555433
No 496
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.92 E-value=3.4e+02 Score=23.19 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=11.8
Q ss_pred HHHHhcCChhhHHHHHHHHhh
Q 038606 143 VAFSKWGEVDKACELIERMDD 163 (666)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~ 163 (666)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 355555555555555555554
No 497
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.47 E-value=60 Score=21.74 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=22.3
Q ss_pred HHHHhcc-CChHHHHHHHHHHHHcCCCCCChh
Q 038606 37 IRCLGSV-GLVEEANMLFDQVKREGLCVPNNY 67 (666)
Q Consensus 37 ~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~ 67 (666)
-+++..+ =|++.|...|..+...+.+||+.+
T Consensus 31 ~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 31 QMCLEDNNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3444444 388999999999998776676654
No 498
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.12 E-value=55 Score=25.49 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred ChhhhhHhhhhchHHHHHHHHhhhhcCCCcchHHHHHHHHhccC
Q 038606 1 MASILSRARRIAPLRVLAQDVVKSRCFMSPGALGFLIRCLGSVG 44 (666)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 44 (666)
+..++...+.+-.|.++++.+...++..|..+...-+..+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
No 499
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=29.95 E-value=6.6e+02 Score=26.20 Aligned_cols=14 Identities=7% Similarity=0.150 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHcC
Q 038606 118 DKALSVFNEIIDHG 131 (666)
Q Consensus 118 ~~A~~~~~~~~~~~ 131 (666)
..-...|+.+.+.+
T Consensus 361 ~~l~~~~e~~~~~~ 374 (547)
T PF14929_consen 361 SVLSSCLEDCLKKD 374 (547)
T ss_pred HHHHHHHHHHhcCC
Confidence 33344444444443
No 500
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.79 E-value=1.7e+02 Score=22.53 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=28.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChh
Q 038606 576 LIDGLCIAGRPDDAIMLWNEMEEKGCAPNRITFMALITGLCKCDRPR 622 (666)
Q Consensus 576 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 622 (666)
++......+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44445555556667777777776665556666555666666666544
Done!